HHSEARCH alignment of GI: 254780348 and SCOP domain: d2g84a1

Alignment

Probab=99.93  E-value=2.6e-26  Score=194.82  Aligned_cols=132  Identities=24%  Similarity=0.397  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCEEEEEEECCC--CCCC--HHHHHHHHHHCCH----------HC
Q ss_conf             789999999999998708821888964799986--998999984388--7698--4899999973001----------06
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY--GGCP--HAEVQALEEAGEE----------AR   68 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~--~g~ii~~g~~~~--~G~~--HAE~~al~~~~~~----------~~   68 (364)
                      ..++.+|++||++|+++.  ..-+.+||||||+  +|+||++|+...  .+.|  |||++||++|..+          ..
T Consensus        24 ~~~e~~M~~ai~lAr~a~--~~g~~P~GaviV~~~~g~Iia~g~N~~~~~~dpt~HAEi~AI~~A~~~~~~~~l~~~~l~  101 (189)
T d2g84a1          24 AAPEARMGYVLELVRANI--AADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLP  101 (189)
T ss_dssp             CSHHHHHHHHHHHHHHHH--HTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSC
T ss_pred             CCHHHHHHHHHHHHHHHH--HCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             885999999999999998--769998899999789998999870876768998634999999999998630111221236


Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--------CCCCCCCCCCCEEE-ECCCCHHHHHHH
Q ss_conf             988999057321157521055565301343246630101211012--------43311001898896-222101232001
Q gi|254780348|r   69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG--------RGLQWLSQKGIIVD-RMMESEGKIFLH  139 (364)
Q Consensus        69 ~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~g--------kGi~~L~~~GI~V~-~~~~~~~~~ln~  139 (364)
                      ++|||||||||      |.|+.+|+++||+|||||+.||+....|        .....+.+++|+|. +++++||.+|++
T Consensus       102 ~~tlY~TlEPC------~MC~~Ai~~a~I~rVvyga~~~d~~~~g~~~~~~~~~~~~~~~~~~ieV~~gvl~dE~~~Llk  175 (189)
T d2g84a1         102 ACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLR  175 (189)
T ss_dssp             CEEEEEEECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHH
T ss_pred             CCEEEECCCCC------HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
T ss_conf             85788205777------178778888517989998618985446765430067776788759998987876999999999


Q ss_pred             HHHHH
Q ss_conf             22220
Q gi|254780348|r  140 AYLTR  144 (364)
Q Consensus       140 ~f~~~  144 (364)
                      .|+-.
T Consensus       176 ~f~~~  180 (189)
T d2g84a1         176 EYNAC  180 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99980

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]