HHSEARCH alignment of GI: 254780348 and SCOP domain: d2hxva1

Alignment
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=4.2e-45  Score=321.74  Aligned_cols=194  Identities=30%  Similarity=0.394  Sum_probs=164.0

Q ss_pred             CHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             22011010278772021136532222101356667642014403663122013454235443444434421576446689
Q gi|254780348|r  150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK  229 (364)
Q Consensus       150 P~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~  229 (364)
                      |||++|+|+|+|||||..+|+++|||++ +|.++|+||+++||||||++|++.|||+||+|.+  ..++|.|||+|++++
T Consensus         1 P~V~lk~A~SlDG~ia~~~g~~~wit~~-~~~~~h~lRa~~DaIlvG~~Tv~~D~p~L~~R~~--~~~~P~rvVld~~~~   77 (198)
T d2hxva1           1 PFVALKYASTLDGKIADHRGDSKWITDK-LRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCRLK--EGRNPVRVILDRKGV   77 (198)
T ss_dssp             CEEEEEEEEETTSEEECTTSCCTTSCST-THHHHHHHHHHSSEEEEEHHHHHHHCCCCCCCST--TSCCCEEEEECTTCT
T ss_pred             CEEEEEEEECCCCCEECCCCCCCCCCCH-HHHHHHHHHHHCCHHHHCCCCCCCCCCEEEECCC--CCCCCEEEEECCCCC
T ss_conf             9799999996988967899987768848-9999999997355123234633012532543146--887643698666777


Q ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf             98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r  230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD  309 (364)
Q Consensus       230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD  309 (364)
                      ++.++..+.... .++++++++...........      .....+++++|+.|+++|+++||||||++|+++||++  +|
T Consensus        78 l~~~~~~~~~~~-~~~ii~~~~~~~~~~~~~~~------~~~~~~l~~il~~L~~~gi~~ilvEGG~~l~~sfl~~--~D  148 (198)
T d2hxva1          78 LSGKVFRVFEEN-ARVIVFTESEEAEYPPHVEK------ALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDH--AD  148 (198)
T ss_dssp             TTTCCCGGGSSS-SCEEEEESCSSCCCCTTSEE------EECCCCHHHHHHHHHHTTCCEEEECCCHHHHHHHGGG--CS
T ss_pred             CCHHHHHHCCCC-CCEEEEECCCCCCCCHHHCC------CCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH--CC
T ss_conf             987787641589-72899964632112012101------3345899999999987799789873389999999974--85


Q ss_pred             EEEEEEECEEECCCCCCCCC---CCCCCCCCCEEEEEEEECCCEEEEEEE
Q ss_conf             99999607432688752333---454544464054468867936999950
Q gi|254780348|r  310 SIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYIG  356 (364)
Q Consensus       310 El~ifiaP~ilG~~g~~s~~---~~~~~~~~~~l~~~~~ig~Dv~~~y~~  356 (364)
                      |+++|+||+++|+ |.+.+.   .......+|++++++.+|+|++++|++
T Consensus       149 e~~~~iaP~ilG~-g~~~~~~~~~~~~~~~~l~l~~~~~~g~di~l~~rp  197 (198)
T d2hxva1         149 VVFGFYSTKIFGK-GLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP  197 (198)
T ss_dssp             EEEEEEESCCCSS-SEETTTTCCCCTTSCCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCHHHCC-CCCCCCCCHHHHHHCCCCEEEEEEEECCEEEEEEEE
T ss_conf             9999985332068-841125521102325376787789989989999997


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Dihydrofolate reductase-like
superfamily: Dihydrofolate reductase-like
family: RibD C-terminal domain-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]