BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
(364 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040025|gb|ACT56821.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter asiaticus str. psy62]
Length = 364
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL
Sbjct: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS
Sbjct: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK
Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA
Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH
Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC
Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
Query: 361 LQEL 364
LQEL
Sbjct: 361 LQEL 364
>gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431]
Length = 367
Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 179/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I+ G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
V + + ++ + + DL L+ L + + S+ VE
Sbjct: 241 VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli HS]
gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS]
Length = 367
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. MG1655]
gi|89107284|ref|AP_001064.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. W3110]
gi|170080000|ref|YP_001729320.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. DH10B]
gi|238899702|ref|YP_002925498.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli BW2952]
gi|256023969|ref|ZP_05437834.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia sp. 4_1_40B]
gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
gi|140252|sp|P25539|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12]
gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli]
gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. MG1655]
gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli]
gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K12 substr. W3110]
gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. DH10B]
gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli BW2952]
gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1]
gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407]
gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
/ 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli DH1]
gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520]
gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482]
gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
Length = 367
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 178/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
V + + ++ + + DL L+ L + + S+ VE
Sbjct: 241 VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli ATCC 8739]
gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli B str. REL606]
gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739]
gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli BL21(DE3)]
gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli B str. REL606]
gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli BL21(DE3)]
gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489]
gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007]
Length = 367
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 178/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
V + + ++ + + DL L+ L + + S+ VE
Sbjct: 241 VHRIVQQPGETWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SE11]
gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli IAI1]
gi|260853634|ref|YP_003227525.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O26:H11 str. 11368]
gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O111:H- str. 11128]
gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11]
gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli IAI1]
gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O26:H11 str. 11368]
gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O111:H- str. 11128]
gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1]
gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14]
gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli 1357]
gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120]
gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3]
gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
Length = 367
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042]
Length = 367
Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli IAI39]
gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli IAI39]
Length = 367
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
DD + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
Length = 367
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 176/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509]
Length = 367
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TV+ADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli E24377A]
gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A]
Length = 367
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 172/366 (46%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---------- 234
RAQS AIL TVLADDP LT R + L E + + + + +
Sbjct: 182 RQRAQSYAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVLP 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli EC4100B]
Length = 367
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVILMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli W]
gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11]
gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167]
Length = 367
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 172/366 (46%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---------- 234
RAQS AIL TVLADDP LT R + L E + + + + +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVLP 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 55989]
gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli 55989]
Length = 367
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 177/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TVLADDP LT R P+RI++D ++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli WV_060327]
Length = 367
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
DD + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella boydii CDC 3083-94]
gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94]
Length = 367
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella sonnei Ss046]
gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Shigella sonnei Ss046]
Length = 367
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82]
Length = 367
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR+QS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 GHRIVQQPGETWFARTQEDSREWPETERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O127:H6 str. E2348/69]
gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O127:H6 str. E2348/69]
gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
Length = 367
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 179/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ DD + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella boydii ATCC 9905]
Length = 367
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR+QS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 GHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74]
Length = 367
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 121/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR+QS AIL TVLADDP L R + L E + + + + + I + P
Sbjct: 182 RLRSQSHAILTSSATVLADDPALIVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 GHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D M S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863]
gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TV+ADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDNQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADVPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3]
gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GAT YVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 179/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1]
Length = 367
Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D M S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88]
Length = 367
Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UTI89]
gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli APEC O1]
gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli S88]
gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
sp. 3_2_53FAA]
gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli UTI89]
gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC
O1]
gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli S88]
gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
sp. 3_2_53FAA]
gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034]
gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3]
gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252]
gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263]
Length = 367
Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 180/367 (49%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
Length = 367
Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 177/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TVLADDP LT R P+RI++D ++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
Length = 367
Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 179/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D M S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G I LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
Length = 367
Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli CFT073]
gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli ED1a]
gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 83972]
gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073]
gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli ED1a]
gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82]
gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 83972]
gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15]
gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O83:H1 str. NRG 857C]
gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1]
gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2]
gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1]
gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli AA86]
gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
Length = 367
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 179/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
Length = 367
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 179/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ ++D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTHEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
16795]
gi|164603692|gb|EDQ97157.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM
16795]
Length = 370
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 117/365 (32%), Positives = 181/365 (49%), Gaps = 12/365 (3%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M S D +M AL ++ +G + NP V C+IVKDG VIG G G PHAEV
Sbjct: 1 MKFDSRYQEDNYYMKKALELAKLGIGAVNPNPLVGCIIVKDGKVIGEGYHMKFGEPHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A+ A E+ GAT YVTLEPCSH+G++PPCA ++ ++RVV+C +DP+ V+G G++
Sbjct: 61 NAINSAKEDIEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIK 120
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITG 176
L GI V + E + L+ ++ + + K A+S D I S I+
Sbjct: 121 KLQNAGIEVTTGILEEEGLKLNEVFFHYIKNNKPLVISKTAISMDGKIATKHMESQWISN 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+ H R + AI+VGI TVL D+P LT R+ + +P+RI++D + K+ ++S +
Sbjct: 181 ESCREMTHEYRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIRIVIDTNLKIPMNSNL 240
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVE 293
+ +I ND + L K I + L ++ G + S+LVE
Sbjct: 241 VNDNKSKTIIFTCNNDLKKINLLKEKDVDVHICPKKEEGVDLNFVIEKLGELKIDSVLVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
GGA + S + LVD + ++ + +IG PS + +EK S
Sbjct: 301 GGATLNDSLFRNNLVDKVKIFMAPKIIGGKDAPSFVSGCGIEKLSEATKLEIKNTTMIDS 360
Query: 349 DVCLE 353
D+ +E
Sbjct: 361 DILIE 365
>gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella dysenteriae Sd197]
gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae
Sd197]
gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
Length = 367
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 176/367 (47%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R H P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+D + + + DL L+ L + + S+ VE
Sbjct: 242 --HHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|256020381|ref|ZP_05434246.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella sp. D9]
gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shigella sp. D9]
gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shigella sp. D9]
Length = 367
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UMN026]
gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412]
gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302]
gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli UMN026]
gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412]
gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302]
gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
Length = 367
Score = 251 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 180/367 (49%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G I LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
Length = 367
Score = 251 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 175/367 (47%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+D + + + DL L+ L + + S+ VE
Sbjct: 242 --HHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 EDL933]
gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. Sakai]
gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4113]
gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4401]
gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4501]
gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4486]
gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4196]
gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4076]
gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC869]
gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC508]
gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. EC4024]
gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4206]
gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4045]
gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4042]
gi|209395713|ref|YP_002269058.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4115]
gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
TW14588]
gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. TW14359]
gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. FRIK2000]
gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. FRIK966]
gi|291281320|ref|YP_003498138.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
biosynthesis protein RibD [Escherichia coli O55:H7 str.
CB9615]
gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli O157:H7 str.
EDL933]
gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli O157:H7 str.
Sakai]
gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4196]
gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4113]
gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4076]
gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4401]
gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4486]
gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4501]
gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC869]
gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC508]
gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4206]
gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4045]
gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4042]
gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4115]
gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
TW14588]
gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. TW14359]
gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
biosynthesis protein RibD [Escherichia coli O55:H7 str.
CB9615]
gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. EC1212]
gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. G5101]
gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. 493-89]
gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. H 2687]
gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
1044]
gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. 1125]
Length = 367
Score = 251 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 175/367 (47%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+D + + + DL L+ L + + S+ VE
Sbjct: 242 --HHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Moorella thermoacetica ATCC 39073]
gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella
thermoacetica ATCC 39073]
Length = 376
Score = 251 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 142/376 (37%), Positives = 200/376 (53%), Gaps = 15/376 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ DA FM+ AL +R +G TS NP+V +IV+DG V+G G G PHAE+ AL
Sbjct: 1 MQPQDAIFMARALELARQGLGRTSPNPTVGAVIVRDGQVVGEGYHQKAGTPHAEIHALRA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+ARGAT YVTLEPC HYGR+PPC + II GI+RVV + DP+ RV+G G + LSQ
Sbjct: 61 AGEKARGATLYVTLEPCCHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + E + A++ R +TLK+A++ D I + ITG ++
Sbjct: 121 GIEVETGLLADEARRLNEAFIKYITTGRPWVTLKMALTLDGKIATRTGAARWITGPAARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ H LR DAILVGIGTVLADDPELT RL + +R+ILD H +L L ++++
Sbjct: 181 RAHELRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAIRVILDSHLRLPLSARVVNLQS 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
AP ++VT P A + LL L R VTS+LVEGGA
Sbjct: 241 EAPTLVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAWQPLLAELARRQVTSILVEGGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
V + + + +VD ++ + + + G P+P+ + + + G D+
Sbjct: 301 EVNATALAAGIVDKVVAFIAPKIFGGREAPAPVGGLGVADPATAWKLEKLAVERCGEDIM 360
Query: 352 LE-Y---IGKNLCLQE 363
L Y G+ CL
Sbjct: 361 LSGYLLKRGEEPCLPG 376
>gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
Length = 367
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LLRAQS AIL TVLADDP LT R P+RI++D ++ +
Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ +D + + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +G
Sbjct: 360 VCLHLVG 366
>gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 2a str. 301]
gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 2a str. 2457T]
gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
str. 301]
gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
str. 2457T]
gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella
flexneri 2002017]
gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str.
2457T]
gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71]
gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671]
gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71]
gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218]
gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304]
Length = 367
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 173/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia fergusonii ATCC 35469]
gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia fergusonii ATCC 35469]
Length = 367
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 176/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ +F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
Length = 367
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 121/366 (33%), Positives = 173/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++ LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella boydii Sb227]
gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Shigella boydii Sb227]
gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella flexneri CDC 796-83]
gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74]
Length = 367
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ E
Sbjct: 241 EHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWGEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia fergusonii ECD227]
Length = 367
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 176/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ +F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SMS-3-5]
gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5]
gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
Length = 367
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG +G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
DD + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O103:H2 str. 12009]
gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O103:H2 str. 12009]
gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010]
Length = 367
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQV-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272]
gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227]
Length = 367
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 121/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + ++ + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGESWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Pantoea vagans C9-1]
gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Pantoea vagans C9-1]
Length = 366
Score = 249 bits (634), Expect = 6e-64, Method: Composition-based stats.
Identities = 128/368 (34%), Positives = 179/368 (48%), Gaps = 18/368 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D R+M+ AL +R T NP+V C+IV+DG V+G G G PHAEV AL AGE
Sbjct: 1 MDERYMARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGID 120
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R I LK+ S D MA S IT ++ V
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R + Q P+R+I+D +++
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQ 240
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
++I ++ D L A + + DL ++ +L R + S+ VE
Sbjct: 241 HRLISQPGE--TWLMRHQPDQQLWPADVTQIAVPLREQQLDLVAMMMLLGQRQINSVWVE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G G L + F G D
Sbjct: 299 AGATLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLSQLADAPAFRFSDVRQVGDD 358
Query: 350 VCLEYIGK 357
+ L +
Sbjct: 359 LRLTLTPQ 366
>gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253]
Length = 367
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 176/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ +F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella dysenteriae CDC 74-1112]
Length = 367
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+D + + + DL L+ L + + S+ V+
Sbjct: 241 EHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVDA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIHHVGPDV 360
Query: 351 CLEYIG 356
CL +G
Sbjct: 361 CLHLVG 366
>gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355]
Length = 367
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 127/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + + P+R+I+D +++ D
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+I L ++ + D + + DL L+ +L R + S+ VE
Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
GA +A + I + LVD +I+Y + ++G + L + F G DV
Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDIRQVGDDV 360
Query: 351 CLEYIGK 357
L +
Sbjct: 361 RLTLTPQ 367
>gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mahella australiensis 50-1 BON]
gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mahella australiensis 50-1 BON]
Length = 363
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 131/361 (36%), Positives = 189/361 (52%), Gaps = 9/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
FM AL +R G T+ NP V +IVK G +IG G G PHAE+ AL EAGE
Sbjct: 2 QHEIFMQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARG+T YVTLEPCSH+GR+PPCA +++ G++ VV+ ++DP+ RV+GRG+ L Q GI
Sbjct: 62 GARGSTVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIK 121
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +ME E + ++ + K A++ D I A S IT +S+ VH
Sbjct: 122 VITGIMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R + A+L GIGTVLADDP LT R + E P+RII D K LDS ++
Sbjct: 182 WWRYRVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAP 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL---VGRGVTSLLVEGGAAVAH 300
++ + + DP F+ K ++I D +D L+ ++ R + S+L+EGG +A
Sbjct: 242 TIMATSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRELHKREIDSVLIEGGPTLAA 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
S I LVD +++ + +IG G+ + + V F DV +E
Sbjct: 302 SAIEEGLVDKAMVFIAPKLIGGKGLSALSGNGIARMADAWQLSGVSVKRFEDDVLIEGYL 361
Query: 357 K 357
K
Sbjct: 362 K 362
>gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
Length = 367
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 174/364 (47%), Gaps = 16/364 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A
Sbjct: 4 EYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKA 63
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 128 RMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ L+ R +I LK+ S D MA S IT ++ V L
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-- 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTPEH 242
Query: 245 --------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+D + + + DL L+ L + + S+ VE G
Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGP 302
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
+A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 303 TLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCL 362
Query: 353 EYIG 356
+G
Sbjct: 363 HLVG 366
>gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103]
gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103]
Length = 367
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 127/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + + P+R+I+D +++ D
Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+I L ++ + D + + DL L+ +L R + S+ VE
Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
GA +A + I + LVD +I+Y + ++G + L + F G DV
Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDLRQVGDDV 360
Query: 351 CLEYIGK 357
L +
Sbjct: 361 RLTLTPQ 367
>gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 403
Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats.
Identities = 118/367 (32%), Positives = 178/367 (48%), Gaps = 14/367 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D ++M+ A+ + G TS NP V C+IVK+G +I G G HAE A+
Sbjct: 37 MHMT--DVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAI 94
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E+ GATAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L
Sbjct: 95 LNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLR 154
Query: 121 QKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + KR ++ LK ++ D I S ITG +
Sbjct: 155 AAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAA 214
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V R + AI+VG+ TVLADDP L R+ P+RI+ D + LDS++++T
Sbjct: 215 RANVQKSRHEYSAIMVGVETVLADDPMLNSRMEN--AKQPVRIVCDSQLRTPLDSQLVQT 272
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
A II T N+D + + I+ RD + LL L G+ SLL+EGG
Sbjct: 273 ARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGG 332
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350
+ + S + LV+ + Y + +IG +P+ + + G D+
Sbjct: 333 SQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDI 392
Query: 351 CLEYIGK 357
L+Y
Sbjct: 393 LLDYEVD 399
>gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
30_2]
gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
30_2]
Length = 367
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 176/365 (48%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M SE + +L R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP+LT R + L E + + + + + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWSELGESTQA-SYPQEELRQPIRIVLDSQNQVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
IV DDP + + DL L+ L + + S+ VE
Sbjct: 241 AHRIVQQPGETWIVRTEDDPRSWPETVRSLKVPEHNGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ +F G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
Query: 351 CLEYI 355
CL
Sbjct: 361 CLHLT 365
>gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
2876]
gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM
2876]
Length = 360
Score = 246 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 123/360 (34%), Positives = 177/360 (49%), Gaps = 12/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G TS NP V +IVKDG +IG G A G HAE A++ +
Sbjct: 3 DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKDGRIIGEGYHAIYGDLHAERNAIKNLTVD 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPC HYG+ PPC + I+ GI +VV+ DP+ VSGRG +L GI V
Sbjct: 63 AKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIEV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
E + EK ++ +K A+S D I S +T S+N+V
Sbjct: 123 IEDFMREECDELNPIFFHYITEKTPYVVMKYAMSMDGKIATRTGSSRYVTNEFSRNEVQK 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R + I+ GIGTVLADDP L R+ G SP+RII D ++ L+S+I +TA
Sbjct: 183 MRHKYRGIMAGIGTVLADDPMLNTRIEG--LRSPVRIICDSELRIPLNSRICQTAGEYET 240
Query: 246 IIVTENDDPVLALA----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
II N A +L +L+ +L + S+L+EGG + S
Sbjct: 241 IIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMYVLHDMKIDSILLEGGGTLNES 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ + LV+ I ++ + VIG SP+E + F + + F D+ LEY
Sbjct: 301 MLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDAVVFKLINVEKFDDDILLEYRR 360
>gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
27755]
gi|166029624|gb|EDR48381.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC
27755]
Length = 377
Score = 246 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 119/381 (31%), Positives = 186/381 (48%), Gaps = 21/381 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D +M A+ ++ G T+ NP V +IVKDG +IG G A G HAE A+
Sbjct: 1 MYVTDQD--YMKRAIELAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHARCGELHAERNAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E A GAT YVTLEPC HYG++PPC + I+E I++VV+ DP+ +V+G+G + L
Sbjct: 59 ASLTESAEGATLYVTLEPCCHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILR 118
Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ +V+ M + + K ++ +K A++ D I S IT +
Sbjct: 119 DAGVAVVEDFMRDKCDELNPIFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITQEAA 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V +R + I+VGIGTVLADDP L R+ G SP+RII D ++ LDS+I+K+
Sbjct: 179 RREVQYMRHRYMGIMVGIGTVLADDPMLNVRVEG--LKSPVRIICDSKLRIPLDSQIVKS 236
Query: 240 ALLAPVIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
A I+ E +L + +LK L+ L + S+L+E
Sbjct: 237 AREYRTIVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKHLMEYLGKENIDSILLE 296
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGS 348
GG + S + + +V + + + + G G +P++ +E G
Sbjct: 297 GGGTLNDSALRAGVVQEVQAFIAPKIFGGAGSRTPVDGIGIELPSQAAVLKFKDICQIGE 356
Query: 349 DVCLE---YIG--KNLCLQEL 364
D+ + + LCLQEL
Sbjct: 357 DLKITCQVLRKEQEELCLQEL 377
>gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola sp. JR]
gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
Length = 385
Score = 246 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 146/366 (39%), Positives = 202/366 (55%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D ++M AL + G TS NP V +IVKDG VIG+G G PHAEV AL E
Sbjct: 1 MIKTDVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALRE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE +RGAT YVTLEPCSHYGR+PPC++ +I G+ RVVV ++DP+ VSG+G+Q + +
Sbjct: 61 AGELSRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ ME E + ++ +R + +K A++ D I A S ITG ++
Sbjct: 121 GIQVEVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VHL R+ DAILVGIGTVL D+P LTCRL Q +P+RIILD +L +D ++KT
Sbjct: 181 LVHLWRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIE 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
APVI+V+ P A +K DL LL L R +TSL VEGGA
Sbjct: 241 QAPVIVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351
V SF+ +RL D + + + ++G P P+ + ++ N + G D+
Sbjct: 301 TVNASFLKNRLADKTVWFVAPKIVGGPQAPGPVGDMGIQFMDECLNIKNMSVQDIGPDLL 360
Query: 352 LEYIGK 357
+
Sbjct: 361 ITGYPD 366
>gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
29220]
gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
29220]
Length = 367
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 176/365 (48%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M SE + +L R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP+LT R L E + + + + + + P
Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWPELGESTQA-SYPQENLRQPIRIVLDSHNQVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
IV DD + + DL L+ L + + S+ VE
Sbjct: 241 EHRIVQQPGETWIVRTQDDTRHWPESVRSIKVPEHNGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ +F G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
Query: 351 CLEYI 355
CL I
Sbjct: 361 CLHLI 365
>gi|307137057|ref|ZP_07496413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli H736]
Length = 361
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 123/361 (34%), Positives = 176/361 (48%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
S AIL TVLADDP LT R + L E + + + + + I + PV +
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTPVHRIV 239
Query: 250 ENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ ++ + + DL L+ L + + S+ VE G +A
Sbjct: 240 QQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD +I+Y + ++G LE+ F + G DVCL +
Sbjct: 300 GALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLV 359
Query: 356 G 356
G
Sbjct: 360 G 360
>gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli OP50]
Length = 361
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 123/361 (34%), Positives = 176/361 (48%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V LLRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
S AIL TVLADDP LT R + L E + + + + + I + PV +
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTPVHRIV 239
Query: 250 ENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ ++ + + DL L+ L + + S+ VE G +A
Sbjct: 240 QQPGETWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEAGPTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD +I+Y + ++G LE+ F + G DVCL +
Sbjct: 300 GALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHLV 359
Query: 356 G 356
G
Sbjct: 360 G 360
>gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium wasabiae WPP163]
gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae
WPP163]
Length = 369
Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 125/372 (33%), Positives = 179/372 (48%), Gaps = 19/372 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MP---QDAFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L
Sbjct: 58 RMAGERARGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQ 117
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q GI V + ++ R ++ LK+A S D MA S IT +
Sbjct: 118 QSGITVSHGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V RA+S AIL TVLADDP LT R L R + + + +
Sbjct: 178 RQDVQRFRAESAAILSSSATVLADDPSLTVRWLELDADVQKR-YSEADLRQPVRVIVDSQ 236
Query: 240 ALLAP----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ P + D ++ + + DL L+ +L R + S
Sbjct: 237 QRVTPQHRVVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINS 296
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
+ VE GA++A + +N+ +VD +I+Y + ++GE L++ F V
Sbjct: 297 VWVEAGASLAGALLNAGVVDELIVYLAPKLLGENARALCLLPGLDQLSQAPEFDIVEVRQ 356
Query: 346 FGSDVCLEYIGK 357
G D+ L K
Sbjct: 357 IGPDLRLRLKPK 368
>gi|315122228|ref|YP_004062717.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495630|gb|ADR52229.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 367
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 268/363 (73%), Positives = 313/363 (86%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +SS D RFMS ALRFS W GLT TNPSVACLIVKDGI++GRGVTAYGG PHAE QAL
Sbjct: 1 MSLSSLDERFMSVALRFSCWGTGLTGTNPSVACLIVKDGIIVGRGVTAYGGRPHAETQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EEAGE ARGATAYVTLEPCSHYG++PPCA+FI+E GI RVVVCV DPDVRVSGRGLQWLS
Sbjct: 61 EEAGERARGATAYVTLEPCSHYGQAPPCAKFIVEAGISRVVVCVIDPDVRVSGRGLQWLS 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
QKGI+VD+++E EG+ L AYLTRQV+ RSH+ LK+A+SQDNMIG+ GCG+V ITG IS+
Sbjct: 121 QKGIVVDKVLEREGERVLGAYLTRQVKNRSHVILKLALSQDNMIGIVGCGNVSITGLISR 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
QVHLLRAQSDAILVGIGTV++D+PELTCRL+GL++ SP+RIILDPH K+SL S+I++TA
Sbjct: 181 KQVHLLRAQSDAILVGIGTVISDNPELTCRLDGLKDRSPIRIILDPHLKISLSSRIMQTA 240
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
LAPVIIVTE +D LAL+ +KKN++I++C+CRDLKKLL IL RG+TSLLVEGGA VA
Sbjct: 241 SLAPVIIVTEKNDCNLALSIKKKNVDIVHCNCRDLKKLLAILADRGITSLLVEGGARVAR 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
SF+ S VDSIILY+SQ +IG GI SPLEE ++E NFMCVRRD FGSDVC EY+ KN C
Sbjct: 301 SFMMSGFVDSIILYKSQKIIGTSGIASPLEEEFIENNFMCVRRDGFGSDVCFEYVRKNFC 360
Query: 361 LQE 363
LQE
Sbjct: 361 LQE 363
>gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
kristensenii ATCC 33638]
gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
kristensenii ATCC 33638]
Length = 369
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 121/366 (33%), Positives = 173/366 (47%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RAQS AIL TVLADDP LT R L + R + + + + P
Sbjct: 184 FRAQSSAILSTSATVLADDPSLTVRWQELDADTQARYP-QDTLRQPVRVIVDSHNRVTPE 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGG 295
V + D P + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQDGPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A + + + +VD +ILY + ++G + L F+ G D+
Sbjct: 303 PQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTSLSDAPEFVFSDVRQLGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 378
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 176/368 (47%), Gaps = 16/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG
Sbjct: 11 PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ++ R ++ LK+A S D MA S IT ++ V
Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
RA+S AIL TVLADDP LT R + L R + + + + +
Sbjct: 191 QRFRAESAAILSTSATVLADDPSLTVRWSELGADVQKR-YSESDLRQPVRVVVDSQQRVT 249
Query: 244 P----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
P + D ++ + + DL L+ +L R + S+ VE
Sbjct: 250 PQHRIVNQPGETWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVE 309
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA++A + +N+ +VD +I+Y + ++GE L++ F G D
Sbjct: 310 AGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQIGPD 369
Query: 350 VCLEYIGK 357
+ L K
Sbjct: 370 LRLRLKPK 377
>gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli 1180]
Length = 361
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 172/361 (47%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----- 244
S AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTPEHRIV 239
Query: 245 -----VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+D + + + DL L+ L + + S+ VE G +A
Sbjct: 240 QQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD +I+Y + ++G LE+ F + G DVCL +
Sbjct: 300 GALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLV 359
Query: 356 G 356
G
Sbjct: 360 G 360
>gi|323705867|ref|ZP_08117439.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323534863|gb|EGB24642.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 360
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 187/361 (51%), Gaps = 12/361 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
++M AL+ ++ VG T+ NP V +I+KDG +IG G Y G PHAE+ AL+ A E+
Sbjct: 2 EKYMKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPC H+G++PPC +I+ GI+ V + ++DP+ V+GRG++ L + G+ V
Sbjct: 62 NGATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVY 121
Query: 128 RMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + L+ + + + ++ LK A++ D I S IT S+ VH +
Sbjct: 122 TGLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKV 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R AI+VGI TV+ D+P LT RL G + P+R+I+D H ++ LD+ +I +I
Sbjct: 182 RGSVMAIMVGINTVIKDNPHLTVRLQGYKN--PLRVIVDSHGRIPLDANVIIDKSAKTLI 239
Query: 247 IVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
T+ A + + L KL+ L RG+ S+L+EGG + +S
Sbjct: 240 ATTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
+ +VD ++ Y + +IG +P+E + + F D+ +E K
Sbjct: 300 LKEGIVDKVMFYIAPKIIGGSNSLTPVEGDGIALIKDAIMIEKIDIKKFDDDILIEGYIK 359
Query: 358 N 358
Sbjct: 360 K 360
>gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
20544]
gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM
20544]
Length = 363
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 10/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G TS NP V +IV+ G ++ G G PHAE+ AL AGE
Sbjct: 2 QDEEFMREALELARNAEGRTSPNPMVGAVIVQGGRIVAAGWHRKAGTPHAEIHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYGR+ PCA+ ++E GI+R V+ + DP+ V+GRG++ L G+
Sbjct: 62 LAKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGVE 121
Query: 126 -VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V ++E E + +L EK + LK A++ D I S IT S+ +VH
Sbjct: 122 TVCGVLEEEARRLNEVFLKWVPEKIPFVALKTAMTLDGKIATRTGESQWITNETSRRRVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R + D I VGIGTVL DDP LT RL +P+RII+D + L +K++
Sbjct: 182 EYRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVRIIVDSQARTPLTAKVVCDGQAKT 241
Query: 245 VIIVTENDDPVLALAFR---KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
++ VTE A + + DL+ L+ +L R + S+ VEGG V S
Sbjct: 242 IVAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRALMQMLGQREICSVFVEGGGRVNFS 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YI 355
+ + LVD + + + +IG +P+E ++ + D+ L Y
Sbjct: 302 LLRAGLVDKVYAFIAPKLIGGSEALTPVEGEGFAALKDCVELSGIQVEEMAGDILLTAYT 361
Query: 356 G 356
Sbjct: 362 R 362
>gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
QYMF]
gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens
QYMF]
Length = 366
Score = 244 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 193/364 (53%), Gaps = 12/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ ++ G T+ NP V +IVK+ VIG G Y G PHAEV A A E
Sbjct: 1 MHNQYMRKAIELAKKGTGHTNPNPLVGAVIVKNNKVIGEGYHHYYGGPHAEVDAFNNATE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +GAT YVTLEPCSHYG++PPCA+ I+E GI +VV+ + DP+ V+G G+ L + GI
Sbjct: 61 DVKGATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ESE K ++ + LK A++ D I A S IT S+ VH
Sbjct: 121 VISEVLESEAKNLNEIFVKYITTEMPFCILKTAMTLDGKIATATGDSKWITNEESRQYVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R Q +I+VGIGTVL DDP+LT RL+ + P+R+I+D K L +++++ +
Sbjct: 181 EIRHQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVDTEAKTPLWAQVLQLSSKVR 240
Query: 245 VII-----VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
II N L + I + + DLK L+ L +G+ S+L+EGGA +
Sbjct: 241 TIIATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQQLGAKGIDSVLIEGGATLN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE- 353
S + +VD ++ + + ++G +P+ + ++ FG D+ +E
Sbjct: 301 DSALQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDAIQLTDIQVRKFGQDIMIEG 360
Query: 354 YIGK 357
Y+GK
Sbjct: 361 YLGK 364
>gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G]
gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68]
Length = 361
Score = 244 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 172/361 (47%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----- 244
S AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTPEHRIV 239
Query: 245 -----VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+D + + + DL L+ L + + S+ VE G +A
Sbjct: 240 QQPGETWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD +I+Y + ++G LE+ F + G DVCL +
Sbjct: 300 GALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLV 359
Query: 356 G 356
G
Sbjct: 360 G 360
>gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium atrosepticum SCRI1043]
gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum
SCRI1043]
Length = 369
Score = 244 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 119/373 (31%), Positives = 176/373 (47%), Gaps = 21/373 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MP---QDELYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L
Sbjct: 58 RMAGERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQ 117
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q GI V + ++ R ++ LK+A S D MA S IT +
Sbjct: 118 QAGITVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177
Query: 180 KNQVHLLRAQSDAILVGIGT-----------VLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ V RA+S AIL T D ++ + P+R+I+D
Sbjct: 178 RQDVQRFRAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQ 237
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+++ +II + D + + + DL L+ +L R +
Sbjct: 238 RVTPQHRIISQPGE--TWLARVQADEQAWPQNVEHLMLPQHNGGVDLVALMMVLGRRQIN 295
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRD 344
S+ VE GA++A + +N+ +VD +I+Y + ++GE L + F V
Sbjct: 296 SVWVEAGASLAGALLNACVVDELIVYLAPKLLGENARSLCLLPGLTQLSQAPEFDIVEVR 355
Query: 345 YFGSDVCLEYIGK 357
G D+ L K
Sbjct: 356 QVGPDLRLRLKPK 368
>gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
Length = 370
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 122/372 (32%), Positives = 182/372 (48%), Gaps = 17/372 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V S D +M+ AL +R + TS NP+V C+IV+DG V+G G G PHAEV AL
Sbjct: 1 MSVLS-DEFYMARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG++A+GAT YVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L
Sbjct: 60 RMAGDKAQGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLH 119
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q GI V + ++ ++ R ++ LK+ S D MA S IT +
Sbjct: 120 QAGIEVCHGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V RA+S AIL TVLADDP L R L RI + + +
Sbjct: 180 RQDVQRFRARSSAILSSSATVLADDPSLAVRWQELDA-DTQRIYPQESLRQPVRIIVDSQ 238
Query: 240 ALLAP----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + P + D + + ++ +Y + DL L+ +L R + S
Sbjct: 239 SRVTPEHRLVSQPGSTWLARPQRDGLAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQINS 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345
+ VE G +A + + + +VD +I+Y + ++G+ P S +E F+
Sbjct: 299 VWVEAGPRLAGALLQANVVDELIVYIAPRLLGDAARPLCVLSGVETLSQTPEFLIADVCQ 358
Query: 346 FGSDVCLEYIGK 357
G DV L +
Sbjct: 359 VGPDVRLTLKPR 370
>gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 378
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 176/368 (47%), Gaps = 16/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG
Sbjct: 11 PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ++ R ++ LK+A S D MA S IT ++ V
Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
RA+S AIL TVLADDP LT R + L R + + + + +
Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADIQKR-YSEADLRQPVRVIVDSQQRVT 249
Query: 244 P----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
P + D ++ + + DL L+ +L R + S+ VE
Sbjct: 250 PQHRIVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVE 309
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA++A + +N+ +VD +I+Y + ++GE L++ F G D
Sbjct: 310 AGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQVGPD 369
Query: 350 VCLEYIGK 357
+ L K
Sbjct: 370 LRLRLKPK 377
>gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 369
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 182/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
RAQS AIL TVLADDP LT R P+RII+D H +++
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+I P + D ++ + + + DL L+ L R + S+ VE
Sbjct: 244 KVI--QQDGPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G A + + + +VD +ILY + ++G + L + F+ G D+
Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 378
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 179/369 (48%), Gaps = 18/369 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG
Sbjct: 11 PQDELYMARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMAG 70
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V ++ R ++ LK+A S D MA S IT ++ V
Sbjct: 131 AVSHGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSL 232
RA+S AIL TVLADDP LT R + P+R+I+D +++
Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTP 250
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I+ + D ++ + DL L+ +L R + S+ V
Sbjct: 251 QHRIVSQPGE--TWLARVQADEQAWPQGVEQVTLPQHNGGVDLVALMMVLGRRQINSVWV 308
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
E GA++A + +N+ +VD +I+Y + ++GE L++ F G
Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIAEVRQIGP 368
Query: 349 DVCLEYIGK 357
D+ L K
Sbjct: 369 DLRLRLKPK 377
>gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
Length = 371
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 129/370 (34%), Positives = 189/370 (51%), Gaps = 17/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M+ A +R TS NP+V C+IV+DG V+G G G PHAEV AL
Sbjct: 1 MLEQDRIYMARAFELARKGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ
Sbjct: 61 AGDKARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R +I LK+A S D + S IT ++
Sbjct: 121 GIETSSNILLEQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARK 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
V +LRAQ+ AIL TV+ADDP LT R Q P+RI+LD H K+
Sbjct: 181 DVQVLRAQASAILSTSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKV 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + ++ + A +I T D+ V ++ + + DL L+ L R + S+
Sbjct: 241 TPEHQVTQLAGECWLIRPTP-DNEVTWQGQVEQVPILADENGIDLVILMMQLAKRNINSI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE G +A S + LVD +I+Y + ++G+ L+ NF +
Sbjct: 300 WVEAGPTLAGSLLKLGLVDELIVYIAPKLLGDTARGLVNFPALKSLSDAPNFEFTDVEKV 359
Query: 347 GSDVCLEYIG 356
G+D+ +
Sbjct: 360 GNDLRVRLRP 369
>gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Anabaena variabilis ATCC 29413]
gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Anabaena variabilis ATCC 29413]
Length = 396
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 185/362 (51%), Gaps = 8/362 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A
Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G++ L G
Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAG 154
Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V +E L+ ++ K+ LK A++ D I S +T ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRILHKKPLGILKYAMTLDGKIATVSGHSAWVTNPSARGE 214
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA DA++VG TV D+P LT G H+P+R+++ L +D+ + +TA
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEG--VHNPLRVVMSRQLDLPVDAHLWETAEA 272
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+++ +P ++K + I+ + +++ L RG S+L E G +A S
Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYDRGFCSVLWECGGTLAASA 332
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I V I+ + + +IG P+P+ + + VR GSD +E
Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392
Query: 358 NL 359
+L
Sbjct: 393 SL 394
>gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
DSM 574]
gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans
DSM 574]
Length = 375
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 183/362 (50%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D FM AL +R G TS NP V ++VKDG V+G+G A G HAEV AL +AG
Sbjct: 2 DQDKHFMQMALELARKARGRTSPNPMVGAVVVKDGQVVGQGWHAKAGTAHAEVVALADAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ARGAT YVTLEPC H+GR+ PC + +++ G++RVV + DP+ V+G+GL L G+
Sbjct: 62 EQARGATVYVTLEPCCHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAGV 121
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + ++ R + LK A S D I A S ITG ++ +
Sbjct: 122 EVQVGVLESEARQLNEIFIKYITTGRPFVVLKAATSLDGKIATATGESKWITGAAARTEG 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR DAILVG+ T+LADDP LT RL + P+R+++D + ++++ A
Sbjct: 182 HRLRDIYDAILVGVNTILADDPALTTRLPEGRGKDPIRVVVDSTARTPTSARVLIQQSAA 241
Query: 244 PVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
II T P A + DL KL+ +L R +TS+L+EGG +
Sbjct: 242 HTIIATTEAAPAERRASLMAAGAEVLVVPGQGPRVDLVKLMELLGQRQITSVLIEGGGKI 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
S + + +VD + + + +IG P P+ + V G D+ +
Sbjct: 302 NGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGAGIMSLNDATKLYNVSLQRVGEDILIT 361
Query: 354 YI 355
Sbjct: 362 GY 363
>gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP]
gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP]
Length = 368
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 181/362 (50%), Gaps = 14/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M+ A+ + G T+ NP V C+IVK+ +I G G HAE A+
Sbjct: 1 MTDVD--YMARAIALAEQARGWTNPNPLVGCVIVKNDQIIAEGYHQKVGEWHAERNAILN 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ GATAYVTLEPC H+GR+PPC +IE GI +V V DP+ V+G+G++ L
Sbjct: 59 CQQDLTGATAYVTLEPCCHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAA 118
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V E L+ ++ ++ LK A++ D I A S I+G +++
Sbjct: 119 GIEVITDFMREACDQLNPIFFHYMQTTSPYVLLKYAMTADGKIATATGESKWISGELARQ 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V + R Q AI+VG+GTVLAD+P L R+ P+R++ D H + L ++++TA
Sbjct: 179 NVQITRHQYSAIMVGVGTVLADNPMLNSRMPN--AKQPIRVVCDSHLRTPLACQLVQTAR 236
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAA 297
P II T + D + + II C + + LL L + S+L+EGG+
Sbjct: 237 QYPTIIATASTDSTKIAQLKAFGVQIIQCKVANKQVDLVDLLAKLGAMQIDSVLLEGGST 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ S + + +V+ I Y + ++G SP+ + N Y G D+ L
Sbjct: 297 LNFSALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLAEAVNLTLKSTQYIGDDILL 356
Query: 353 EY 354
+Y
Sbjct: 357 DY 358
>gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 536]
gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli NC101]
gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536]
gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli NC101]
gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972]
Length = 361
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 123/362 (33%), Positives = 177/362 (48%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+D + + + DL L+ L + + S+ VE G +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358
Query: 355 IG 356
+G
Sbjct: 359 VG 360
>gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UM146]
Length = 361
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 124/362 (34%), Positives = 178/362 (49%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+D + + + DL L+ L + + S+ VE G +
Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358
Query: 355 IG 356
+G
Sbjct: 359 VG 360
>gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
gi|225202294|gb|EEG84648.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
Length = 384
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 114/363 (31%), Positives = 173/363 (47%), Gaps = 16/363 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ + TS NP+V C+IVK+G ++G G + G PHAEV AL+ AG+
Sbjct: 16 HDEHYMRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMAGD 75
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI
Sbjct: 76 KAKGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGID 135
Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + L+ +++ +I LK+ S D +A S IT S+ V
Sbjct: 136 VSHGILMQEAEKLNVGFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQ 195
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQ+ AIL TVLAD+P + R P+RI+ D +++ +
Sbjct: 196 NFRAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTEN 255
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
KI + + DL L+ L R + ++ VE
Sbjct: 256 HKITQIEGECWLARTKLQPSDWQGNVSEILLPTNGKNSGVDLVLLMMQLGKRNINTVWVE 315
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349
GA A + + + LVD +I+Y + ++G+ SPL F GSD
Sbjct: 316 SGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSLQQIGSD 375
Query: 350 VCL 352
+ +
Sbjct: 376 IRV 378
>gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Citrobacter koseri ATCC BAA-895]
gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895]
Length = 367
Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats.
Identities = 126/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AG+
Sbjct: 2 LDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M SE + +L R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI+LD +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ DD + + + DL L+ +L + + S+ VE
Sbjct: 242 HRIVQQPGD--TWFARTQDDSRIWPETVRSLRVPEHNGHLDLVVLMMLLGKQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + +VD +I+Y + ++G LE+ +F + G D
Sbjct: 300 AGPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLSEAPHFKFNEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL I
Sbjct: 360 VCLHLIP 366
>gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
BKT015925]
gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum
BKT015925]
Length = 372
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 14/372 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D R+M A+ S+ +G T NP V +IVKD +IG G Y G HAE+ AL+ E
Sbjct: 1 MDLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDNKIIGEGYHQYFGENHAEINALKNVKE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GAT YVTLEPCSHYG++PPCA I++ GI++V++ + DP+ V+GRG++ L GI
Sbjct: 61 DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + E E K ++ K LK A++ D I S I+ IS+ VH
Sbjct: 121 VIQGVLEEEIKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEISRQYVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R + I+VGIGT+L D+P LT RLN + RII+D ++ ++SK++ A
Sbjct: 181 EIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRIIIDSKGRIPVESKVLNLESEAN 240
Query: 245 VIIVT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
IIVT V+ + I + D DLK L+ L R + S+L+EGGA +
Sbjct: 241 TIIVTTELASREKIEVIRSKGAEVIITPLCDDRVDLKYLMRELGERNIDSVLLEGGAELN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
+S +N +VD +I + S +IG +P+ N ++ F D+ +E
Sbjct: 301 YSALNEGIVDKVISFISPKIIGGKEAKTPVGGVGKSAISECVNLENIKVSQFEEDIVIEG 360
Query: 354 YIG--KNLCLQE 363
YI K LC QE
Sbjct: 361 YIKGEKKLCSQE 372
>gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 369
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RAQS AIL TVLADDP LT R L + + + + + + P
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQA-LYPQDALRQPVRIIVDSHNRVTPQ 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGG 295
V + D P + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQDGPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A + + + +VD +ILY + ++G + L + F+ G D+
Sbjct: 303 PQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTQLSDAPEFVFSEVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLQPK 368
>gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 369
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RAQS AIL TVLADDP LT R L + + + + + + P
Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQA-LYPQDALRQPVRIIVDSHNRVTPQ 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGG 295
V + D P + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQDGPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A + + + +VD +ILY + ++G + L + F+ G D+
Sbjct: 303 PQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLQPK 368
>gi|302390233|ref|YP_003826054.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermosediminibacter oceani DSM 16646]
gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermosediminibacter oceani DSM 16646]
Length = 373
Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 135/373 (36%), Positives = 204/373 (54%), Gaps = 15/373 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D FM AL ++ G TS NP V ++VKDG ++G G G PHAEV+AL +A
Sbjct: 2 ERDVFFMRRALDLAKKGRGTTSPNPMVGAVVVKDGEIVGEGYHRKAGEPHAEVEALAQAA 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGA YV LEPC HYGR+PPCA II G++RVV + DP+ V+G+G++ L + GI
Sbjct: 62 ERARGAELYVNLEPCCHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E L+ + + + + KIA S D I MA S ITG ++ +
Sbjct: 122 EVVVGVLEEEAKKLNEVFIKYIITGKPFVVAKIAQSFDGKIAMASGESRWITGEPARVKA 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR+ DAI+VG+GTV+ADDP LTCRL ++ +P+RI++D ++ D+++++
Sbjct: 182 HELRSWYDAIMVGVGTVMADDPLLTCRLPEKRK-NPVRIVVDSGARMPPDARMLRCEGGR 240
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK----LLTILVGRGVTSLLVEGGAAVA 299
++ TE D A +++ + +I + + L+ IL G G+TS+LVEGG+ +
Sbjct: 241 VILATTERADSERVSALKERGVEVIKVPPAEGRVDLSRLMEILGGMGITSVLVEGGSTLT 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S I LVD ++++ + +VIG GI S ++ F D G D+ LE
Sbjct: 301 SSLIKGNLVDKLLVFVAPVVIGGEGIDSVGKLHVDRLSQAPRFKFHSIDAIGGDLLLEAY 360
Query: 356 G-----KNLCLQE 363
++ CL
Sbjct: 361 PDLKREEDSCLPG 373
>gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. LSU-61]
Length = 361
Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 122/362 (33%), Positives = 173/362 (47%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPE--HHI 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+D + + + DL L+ L + + S+ VE G +
Sbjct: 239 VQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358
Query: 355 IG 356
+G
Sbjct: 359 VG 360
>gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120]
Length = 396
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 121/362 (33%), Positives = 185/362 (51%), Gaps = 8/362 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A
Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G+ L G
Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAG 154
Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V +E L+ ++ R V K+ LK A++ D I S +T ++ +
Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRIVHKKPLGILKYAMTLDGKIATTSGHSAWVTNPSARGE 214
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA DA++VG TV D+P LT G H+P+R+++ L LD+ + +T
Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEG--VHNPLRVVMSRQMDLPLDAHLWETVEA 272
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+++ +P ++K + I+ + +++ L RG S+L E G +A S
Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYDRGFCSVLWECGGTLAASA 332
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I V I+ + + +IG P+P+ + + VR GSD +E
Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392
Query: 358 NL 359
+L
Sbjct: 393 SL 394
>gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
frederiksenii ATCC 33641]
gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
frederiksenii ATCC 33641]
Length = 369
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 171/366 (46%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----------K 235
RA+S AIL TVLADDP LT R L + R + +
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQELDTETQARYP-QDTLRQPTRIILDSHNRVTPE 242
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D A ++ + + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQEGTCWLARVEADEQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + +VD +ILY + ++G + L F G D+
Sbjct: 303 PQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFEFSDVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 29 QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 88
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q GI
Sbjct: 89 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 148
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D A S IT ++ V
Sbjct: 149 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 208
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 209 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 267
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
V + + ++ + + DL L L + + S+ VE
Sbjct: 268 VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEA 327
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 328 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 387
Query: 351 CLEYIG 356
CL +G
Sbjct: 388 CLHLVG 393
>gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 174/366 (47%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 7 QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q GI
Sbjct: 67 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 126
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R +I LK+ S D A S IT ++ V
Sbjct: 127 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 187 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 245
Query: 245 VIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEG 294
V + + ++ + + DL L L + + S+ VE
Sbjct: 246 VHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ F + G DV
Sbjct: 306 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 365
Query: 351 CLEYIG 356
CL +G
Sbjct: 366 CLHLVG 371
>gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
Length = 367
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP+LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ +D + + + DL LL +L + + SL VE
Sbjct: 242 HRIVSQPGE--TWFARTKEDDRVWPESVRTIQVPEHNGHLDLVLLLMLLGKQQINSLWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + +VD +I+Y + ++G LE+ F Y G D
Sbjct: 300 AGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPGLEKLADAPQFQFKEIRYTGPD 359
Query: 350 VCLEYIG 356
VCL I
Sbjct: 360 VCLHLIP 366
>gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 5 str. 8401]
gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella
flexneri 5 str. 8401]
gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70]
gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6]
Length = 361
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 171/361 (47%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D MA S IT ++ V RAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----- 244
S AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPVRIVIDSQNRVTPEHRIV 239
Query: 245 -----VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+D + + + DL L+ L + + S+ VE G +A
Sbjct: 240 QQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + LVD +I+Y + ++G LE+ F + G DVCL +
Sbjct: 300 GVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHLV 359
Query: 356 G 356
G
Sbjct: 360 G 360
>gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
Length = 368
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 172/367 (46%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 2 QDEVYMARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ ++D + DL L+ L R + S+ VE
Sbjct: 242 HRIVHQPGE--TWFARTDEDSRQWPDGVSTLNIPAHNGQLDLVLLMMQLGRRQINSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + +VD +I+Y + ++G LE+ F G D
Sbjct: 300 AGPRLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPQFRFNEIRQVGPD 359
Query: 350 VCLEYIG 356
+CL
Sbjct: 360 LCLHLTP 366
>gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae NTUH-K2044]
gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 367
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 176/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+R+++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + D + + + DL L+ +L + + S+ VE
Sbjct: 242 HRIV--QQAGETLFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LEE +F G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. USDA 5905]
Length = 361
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 121/362 (33%), Positives = 172/362 (47%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+ S D M S IT ++ V LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ +
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPE--HHI 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+D + + + DL L+ L + + S+ VE G +
Sbjct: 239 VQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358
Query: 355 IG 356
+G
Sbjct: 359 VG 360
>gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
bercovieri ATCC 43970]
gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
bercovieri ATCC 43970]
Length = 369
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+S AIL TVLADDP LT R + L + + + + P
Sbjct: 184 FRAESAAILSTSATVLADDPSLTVRWDELDS-ETQGWYPQARLRQPIRIILDSHNRVTPH 242
Query: 246 IIVTENDDPVL----------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
V + D P A ++ + + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQDGPCWLARVEADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + +VD +ILY + ++G + L F+ G D+
Sbjct: 303 PQLAGALLQAGVVDELILYIAPKLLGSDARGLCELTGLTSLSQAPEFVFSDVRPVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|284051945|ref|ZP_06382155.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca]
gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis
NIES-39]
Length = 387
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 116/369 (31%), Positives = 184/369 (49%), Gaps = 8/369 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL
Sbjct: 8 SVSEFDRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQKIIGEGYHPGPGQPHAEIFALR 67
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L +
Sbjct: 68 SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCE 127
Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E + L+ ++ R + K++ K A++ D I S +TG I++
Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGIFKYAMTLDGKIATDIGDSAWVTGAIAR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH LR DA++VG TV D+P L +G E +P+R+++ L +++ T+
Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHL--TTHGQGEPNPLRVVMSRSLDLPSSARLWDTS 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
A ++ P RK+ + ++ K+++ R S+L E G +A
Sbjct: 246 EAATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYERQFLSVLWECGGRLAS 305
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
I V I+ + + +IG PSP+ + V GSD +E
Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTQALSLEGVSLRAIGSDYLIEGY 365
Query: 356 GKNLCLQEL 364
N + L
Sbjct: 366 LSNGRSRTL 374
>gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis IP 31758]
gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
IP 31758]
Length = 369
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
RA+S AIL TVLADDP LT R P++IILD H +++
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTP-- 241
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ P + + D ++ + Y + DL L+ L R + S+ VE
Sbjct: 242 RHKVIQQDGPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +ILY + ++G + L F G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 367
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 176/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+R+++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + D + + + DL L+ +L + + S+ VE
Sbjct: 242 HRIV--QQAGETLFARLRADARQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LEE +F G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Dickeya dadantii 3937]
gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Dickeya dadantii 3937]
Length = 370
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 120/367 (32%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R TS NP+V C+IV+D ++G G G PHAEV AL AG++
Sbjct: 6 DEFYMARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMAGDK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEV 125
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + +L R ++ LK+ S D MA S IT S+ V
Sbjct: 126 RHSVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
RAQS AIL TVLADDP LT R P+R+I+D +++
Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQH 245
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I + D ++ ++ DL L+ L R + ++ VE
Sbjct: 246 RLISQPGQ--TWLARSRQDGQPWPDGVEQLDMPLHGGGIDLVALMMTLGKRQINTVWVEA 303
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +I+Y + ++G+ P LE+ F G D+
Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARPLCVLPGLEQLSQAPAFAMTDVCQVGPDL 363
Query: 351 CLEYIGK 357
L +
Sbjct: 364 RLTLKPQ 370
>gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis KIM 10]
gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis biovar Microtus str. 91001]
gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis IP 32953]
gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Antiqua]
gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Nepal516]
gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Pestoides F]
gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CA88-4125]
gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Angola]
gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1]
gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis YPIII]
gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis PB1/+]
gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CO92]
gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Pestoides A]
gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. India
195]
gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Nepal516]
gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
gi|294504911|ref|YP_003568973.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis Z176003]
gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis KIM
10]
gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis biovar Microtus str. 91001]
gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Yersinia pseudotuberculosis IP
32953]
gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Yersinia pestis Nepal516]
gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis Antiqua]
gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis CO92]
gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis Pestoides F]
gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CA88-4125]
gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola]
gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
YPIII]
gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
PB1/+]
gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Nepal516]
gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. India
195]
gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Pestoides A]
gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis D106004]
gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis D182038]
gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis Z176003]
Length = 369
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
RA+S AIL TVLADDP LT R P++IILD H +++
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTP-- 241
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ P + + D ++ + Y + DL L+ L R + S+ VE
Sbjct: 242 RHKVIQQDGPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +ILY + ++G + L F G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
Length = 367
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 176/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+R+++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + D + + + DL L+ +L + + S+ VE
Sbjct: 242 HRIV--QQAGETLFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LEE +F G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELNQAPHFKFNEIRQVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
Length = 370
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 4 DELYMARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMAGKR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ +L R ++ LK+ S D MA S IT ++ V
Sbjct: 124 RHGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----------K 235
LRA+S AIL TVLADDP LT R + L R + + L +
Sbjct: 184 LRAESAAILSTSATVLADDPSLTVRWDELDA-ETQRSYPRENLRQPLRIILDGHNRVTPQ 242
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D L ++ + DL ++ L R V S+ VE G
Sbjct: 243 HKLIQQPGTTWLARLQPDQGLWPQNVEQLQFPAHGGGIDLVVMMMQLAKRQVNSIWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
A ++ + + + LVD +ILY + ++G+ G LE+ F+ G D+
Sbjct: 303 ARLSGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEQLIDAPEFVFSEVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKAK 368
>gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20]
gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
gi|1172932|sp|P44326|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd
KW20]
gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
Length = 372
Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 189/372 (50%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II+ LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEQIIFPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA ++ S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLSGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4]
gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Geobacter uraniireducens Rf4]
Length = 368
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 188/369 (50%), Gaps = 11/369 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ F + M A+ ++ +G T+ NP+V C+IVKDG V+G G G PHAEV AL +
Sbjct: 1 MEHFHEKMMKRAIVLAKRGIGRTAPNPTVGCVIVKDGAVVGEGWHKKAGTPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGA YVTLEPC+H+G++PPCA +I + RV + + DP+ RV G G+ L
Sbjct: 61 AGEMARGADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E + ++ + LK A++ D AG S IT S+
Sbjct: 121 GIEVVVSVLEDNCRSLNEPFIKHMTTGLPFVILKSAMTLDGKTATAGKDSKWITSDKSRQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+ DAI+VG+GTV+ADDP LT R+ P+R+I+D ++ L S+++
Sbjct: 181 YVHKLRAKLDAIMVGVGTVMADDPLLTSRIPA--GRDPLRVIVDSTLRIPLSSQVLHVDS 238
Query: 242 LAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A +I T +DD A DL L L G GV SLL+EGG A
Sbjct: 239 PAKTVIATISDDEAQAARITASGADVLRCRQKNGRVDLHDLFVKLGGLGVQSLLLEGGGA 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+A + L+D + + + ++G G+ +E + GSD+ ++
Sbjct: 299 LAGEALRCGLIDKCMFFYAPKLVGGEGLGPFSGKGVELMADAITLKNISITKIGSDILVQ 358
Query: 354 YIGKNLCLQ 362
+N CLQ
Sbjct: 359 GYPENACLQ 367
>gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 367
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 127/364 (34%), Positives = 182/364 (50%), Gaps = 13/364 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D RFM AL + G TS NP V ++VKDG ++G G G PHAE+ AL
Sbjct: 1 MT-NNDDQRFMQRALELAARARGRTSPNPLVGAVLVKDGQILGEGYHQRAGTPHAEINAL 59
Query: 61 EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG E A+GA+ YV LEPCSHYGR+ PCA ++E G+ VV+ DP+ +VSGRG+Q L
Sbjct: 60 NTAGRERAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQIL 119
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI + +E + + R ++LK+A++ D I + S ITG
Sbjct: 120 QEAGIKTRVGVLTAEARELNEFFFKYIQGGRPFVSLKVAMTLDGKIASSNGDSRWITGTA 179
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH LR D I+VGIGTVL DDP L RL + P+RII+D + LDS I +
Sbjct: 180 SREYVHQLRNIYDGIMVGIGTVLKDDPRLNTRLELEGKRDPVRIIIDGRLDMPLDSNIAR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVE 293
T ++ T + ++ I + +L IL + SLL+E
Sbjct: 240 TGHEQRTLVFTAENADQEKANSLRECGLEIIKLGGNPDRLNIEEALDILGKMEIMSLLLE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGS 348
GGA + I +LVD + + + +IG PSPL + V +F
Sbjct: 300 GGAEINSYMIEKQLVDKLYWFIAPKIIGGRSSPSPLGGEGIKIMNQAIKLKSVTTRHFDD 359
Query: 349 DVCL 352
D+ +
Sbjct: 360 DILI 363
>gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
Length = 366
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 125/368 (33%), Positives = 176/368 (47%), Gaps = 18/368 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL +R T NP+V C+IV+DG V G G G PHAEV AL AGE
Sbjct: 1 MDELYMARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIA 120
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R I LK+ S D MA S IT ++ V
Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R + Q P+R+I+D +++
Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQ 240
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
++I ++ D A + + DL ++ +L + + S+ VE
Sbjct: 241 HRLISQPGE--TWLMRHQPDQQHWPAEVTQIAVPLREQQLDLVAMMMLLGQKQINSVWVE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA++A + + + LVD +I+Y + ++G G L F G D
Sbjct: 299 AGASLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLRSLADAPAFRFSDVRQVGDD 358
Query: 350 VCLEYIGK 357
+ L +
Sbjct: 359 LRLTLTPQ 366
>gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
gi|188019376|gb|EDU57416.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
Length = 371
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 121/370 (32%), Positives = 176/370 (47%), Gaps = 17/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M+ AL ++ TS NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MIEQDRIYMARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A+GATAYVTLEPCSH+GR+PPCA+ +I G+RRVV + DP+ +V+GRGL LSQ
Sbjct: 61 AGEKAKGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R ++ LK+A S D + S IT ++
Sbjct: 121 GIETASGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD-------- 233
V +LRAQ+ AIL TVLAD+P LT R N L + + +
Sbjct: 181 DVQVLRAQASAILSTSSTVLADNPSLTVRWNELPA-EIHAVYPQSTLRQPIRIVLDNHNR 239
Query: 234 --SKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
++ T L +V +P ++ + DL L+ L R V S+
Sbjct: 240 VTAEYKVTQLAGECWLVRSQPEPDAVWQGQVEQLAIPSDDNGIDLVILMMQLAKRNVNSI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE G +A S + LVD +I+Y + ++G+ L + F
Sbjct: 300 WVEAGPILAGSLLKLGLVDELIVYIAPKLLGDTARGLVNIPALAHLSDAQKFEFTDVQKV 359
Query: 347 GSDVCLEYIG 356
G D+ +
Sbjct: 360 GDDLRVRLRP 369
>gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
Length = 370
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 120/367 (32%), Positives = 180/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++
Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + +L R ++ LK+ S D MA S IT S+ V
Sbjct: 126 QHGVLMDQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
RAQS AIL TVLADDP LT R P+R+I+D +++
Sbjct: 186 FRAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQH 245
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+++ + + D ++ ++ DL L+ L R + ++ VE
Sbjct: 246 RLVSQPGQ--TWLARASQDAQSWPDGVEQLTMPLHGGGIDLVALMMTLGKRQINTVWVEA 303
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA +A + + + +VD +I+Y + ++G+ LE+ F G DV
Sbjct: 304 GAHLAGALLQAGVVDELIVYLAPTLLGDAARSLCVLPGLEQLSQAPMFEMTDVRQIGPDV 363
Query: 351 CLEYIGK 357
L +
Sbjct: 364 RLTLKPR 370
>gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter sp. 638]
gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp.
638]
Length = 367
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 180/366 (49%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG+++G G G PHAEV AL AGE
Sbjct: 2 QDEIYMARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC + +I+ G+ RVV + DP+ +V+GRGL L Q+GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M ++ + +L R +I LK+ S D MA S +T S+ V
Sbjct: 122 VSHGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP +T R + L + + + + + L I + P
Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNQDTQA-LYPQENLRQPLRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +D + + + DL L+ +L + V S+ VE
Sbjct: 241 AHRIVQQPGETLFARTKEDDRQWPEHVRSIMVPEHKGHLDLVVLMMLLGKQQVNSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGHEARGLFALPGLEKLADAPQLKFSDIRPVGPDV 360
Query: 351 CLEYIG 356
CL
Sbjct: 361 CLHLTP 366
>gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26]
gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932]
gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55]
gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34]
gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79]
gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Clostridium difficile R20291]
gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58]
gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196]
gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291]
Length = 367
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 9/362 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+
Sbjct: 1 MNQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAI 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L
Sbjct: 61 NSAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLK 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I V + E E + A+ KR +K AVS D I S I+ S
Sbjct: 121 DNNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K
Sbjct: 181 RYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
++ + L++ II +L L ++ G + S+LVEGGA
Sbjct: 241 KTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ S ++LVD + L+ S +IG P+ + + D+
Sbjct: 301 TLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDGDIL 360
Query: 352 LE 353
+E
Sbjct: 361 IE 362
>gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
Length = 371
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 131/370 (35%), Positives = 187/370 (50%), Gaps = 17/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M+ A ++ TS NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MLEQDRIYMARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATAYVTLEPCSH+GR+PPCA+ +I GI RVV + DP+ +V+GRGL L+Q
Sbjct: 61 AGDKAKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R +I LK+A S D +A S IT ++
Sbjct: 121 GIETASNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARK 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230
V +LRAQ+ AIL TVLADDP LT R N L E P+RI+LD H ++
Sbjct: 181 DVQVLRAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRI 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ D K+ + ++ T D V ++ + DL L+ L R V S+
Sbjct: 241 TPDHKVTQLEGECWLVRPTP-DTAVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNSI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A S + LVD +I+Y + ++G+ L F +
Sbjct: 300 WVEAGAKLAGSLLKLGLVDELIVYIAPKLLGDAARGLVSLPELSALSDAPKFEFTDVEKV 359
Query: 347 GSDVCLEYIG 356
GSD+ +
Sbjct: 360 GSDLRVRLRP 369
>gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas mendocina ymp]
gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
mendocina ymp]
Length = 371
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 181/369 (49%), Gaps = 14/369 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL +
Sbjct: 1 MSERDHLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L+
Sbjct: 61 AGERARGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANA 120
Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V ++E+E + ++ R + +K A+S D MA S ITG ++
Sbjct: 121 GIEVLSGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
+V LRAQS +L G TVLADD LT R + P+R+++D ++
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L + + DL+KLL L GRGV +L
Sbjct: 241 LSKAFFQVGPALVATCAAAAARDRYLADDHELLAVPGSNGHVDLRKLLQELAGRGVNEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F + LVD ++ + ++G P PL V G
Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARPLFELPLNRMAEAPELQIVDIRAVGD 360
Query: 349 DVCLEYIGK 357
D + + K
Sbjct: 361 DWQITAVPK 369
>gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
Length = 370
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 118/367 (32%), Positives = 174/367 (47%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++
Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 66 AHGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + +L R ++ LK+ S D MA S IT S+ V
Sbjct: 126 HHGVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
RAQS AIL TVLADDP LT R P+R+I+D +++
Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQ- 244
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ D ++ ++ DL L+ L R + ++ VE
Sbjct: 245 -HCLVNQPGQTWLARARQDDQSWPDGVEQLEMPLHGGGIDLVGLMMTLGKRQINTVWVEA 303
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +I+Y + ++G+ LE+ F G DV
Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARSLCVLPGLEQLSQAPMFDMTDVCQIGPDV 363
Query: 351 CLEYIGK 357
L +
Sbjct: 364 RLTLKPR 370
>gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
ATCC 35236]
gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
ATCC 35236]
Length = 369
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 172/366 (46%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V++G ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAV 123
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RAQS AIL TVLADDP LT R L + + + + + + P
Sbjct: 184 FRAQSAAILSTSATVLADDPSLTVRWQELDAQTQA-LYPQDRLRQPVRIILDSHNRVTPE 242
Query: 246 IIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEGG 295
V + D P + + DL L+ L R + S+ VE G
Sbjct: 243 HKVIQQDGPCWLARVDADEQPWPDNVEQLLLPRHNNGVDLVLLMMQLARRQINSIWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + +VD +ILY + ++G + L + F+ G D+
Sbjct: 303 PQLAGALLQAGVVDELILYIAPKLLGSDARGLCHLAGLTQLRDAPEFVFSDVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
Length = 370
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 174/367 (47%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE
Sbjct: 2 IDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +L R I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TVLAD+P LT R N Q P+R+++D +++
Sbjct: 182 RFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQ 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
++I ++ D + + DL ++ +L R + S+ VE
Sbjct: 242 HRLIDQPGE--TWLMRSAPDQHVWPESVTQIAVPQRESQLDLVAMMMLLGQRQINSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LE G D
Sbjct: 300 AGAKLAGALLQAGLVDELIVYLAPKLLGNAARGLCELPGLEHLAAAPALNFSDVRRVGGD 359
Query: 350 VCLEYIG 356
+ L
Sbjct: 360 LRLTLTP 366
>gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424]
Length = 362
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 123/361 (34%), Positives = 189/361 (52%), Gaps = 9/361 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SSFD M + +R G TS NP V +IVKDG VIG G G PHAEV AL
Sbjct: 1 MT-SSFDREMMQHCINLARQAAGKTSPNPMVGAVIVKDGQVIGEGFHPKAGQPHAEVFAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++A E+A+GAT Y++LEPC+HYGR+PPC + +IE + +VV+ + DPD RVSG G++ L
Sbjct: 60 KQAAEQAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQ 119
Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + E + ++ R + K+ LK A++ D I S ITG S
Sbjct: 120 EAGIEVVVGVEEDACRRLNEGFIHRVLSKKPFGILKYAMTLDGKIATTSGHSAWITGEAS 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRA DA+++G TV D+P LT H+P+R+++ L L++ + +T
Sbjct: 180 RRLVHHLRASCDAVIIGGNTVRQDNPHLTSHGVS--SHNPLRVVMSRSLNLPLEAHLWET 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + ++ E +P L K+ + +I +++ L RG +S+L E G +A
Sbjct: 238 SQVPTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYERGFSSVLWECGGILA 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
I +V ++ + + +IG PSP+ + LEK V +D +E
Sbjct: 298 ARAIAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEKMTEALQLEKVTFHQIENDFVIEG 357
Query: 355 I 355
Sbjct: 358 Y 358
>gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
86-028NP]
gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
86-028NP]
Length = 372
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 188/372 (50%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFK 229
+ V +RA+S A+L TVLADDP L R + P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSETRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Haemophilus influenzae 10810]
Length = 372
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 125/372 (33%), Positives = 188/372 (50%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEKIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
11116]
gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
11116]
Length = 372
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 190/372 (51%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
Length = 372
Score = 239 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 189/372 (50%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + E P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
gi|225206725|gb|EEG89079.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758]
Length = 370
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 179/364 (49%), Gaps = 18/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKDGSIIGEGYHEKCGELHAERNAIASLTES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ +VSG+G + L + G+ V
Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGVRV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ + ++ +K A++ D I S I+G +++ VH
Sbjct: 123 EEDFLREECDALNPVFFHYITTGLPYVVMKYAMTADGKIATKTGASKWISGEEARSLVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R AI+ GIGTVLADDP L RL G + P+RII D ++ LDS+I +TA
Sbjct: 183 MRHDYMAIMAGIGTVLADDPMLNVRLEGKKS--PVRIICDSMLRIPLDSQICQTAGRYRT 240
Query: 246 IIVTENDDPVLALAFRKKN----------INIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I+ + KK+ +L+ L+ L G+ S+L+EGG
Sbjct: 241 IVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEINLQLLMRKLGELGIDSVLIEGG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
+ + S +V+ + + + + G G +P+E +EK +R G D+
Sbjct: 301 GTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFGVEKVDDAIKLQLMRISQVGEDI 360
Query: 351 CLEY 354
EY
Sbjct: 361 LAEY 364
>gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
Length = 372
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 124/374 (33%), Positives = 189/374 (50%), Gaps = 21/374 (5%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE A
Sbjct: 1 MSEFSSQDHVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AGE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ L
Sbjct: 61 LAQAGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKML 120
Query: 120 SQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
S GI ++ + + +L R + + LK+A+S D M S ITG
Sbjct: 121 SDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSD 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
+++ V +RA+S A+L T++ADDP L R + E+ P+R+ILD
Sbjct: 181 ARSDVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQ 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
++ K+ T ++ D F II LK+++ L R +
Sbjct: 241 HRIQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEQIILPKENLLKEVMRELGKRQI 296
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
+L VE GA +A S I+++LVD +I+Y + ++G+ L + +
Sbjct: 297 NTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNEL 356
Query: 344 DYFGSDVCLEYIGK 357
+ G D+ L Y K
Sbjct: 357 EQIGDDIKLTYTPK 370
>gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328]
Length = 388
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 183/363 (50%), Gaps = 8/363 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL
Sbjct: 8 SVSEFDRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDDQIIGEGFHPGPGQPHAEIFALR 67
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L Q
Sbjct: 68 SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQ 127
Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E + L+ ++ R + K++ LK A++ D I S +TG I++
Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLDGKIATDTGHSAWVTGAIAR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH LR DA++VG TV D+P L +G E +P+R+++ L +++ T+
Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHL--TTHGQGEPNPLRVVMSRSLDLPSSARLWDTS 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
A ++ P RKK + ++ K+++ R S+L E G +A
Sbjct: 246 EAATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYERQFLSVLWECGGRLAS 305
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
I V I+ + + +IG PSP+ + V GSD +E
Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLEAVSLRAIGSDYLIEGY 365
Query: 356 GKN 358
N
Sbjct: 366 LSN 368
>gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 367
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 176/365 (48%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M + + +L R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMQDAEAINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP +T R N L + + + + L I + P
Sbjct: 182 HLRAQSHAILTSSETVLADDPAMTVRWNELNADTQA-LYPQENLRQPLRIVIDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
I +D + + + DL L+ +L + V S+ VE
Sbjct: 241 EHRIVQQPGETWIARTKEDSRDWPESVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD +I+Y + ++G LE+ G DV
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
Query: 351 CLEYI 355
CL
Sbjct: 361 CLHLT 365
>gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
Length = 367
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 176/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+R+++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + D + + Y DL L+ +L + V S+ VE
Sbjct: 242 HRIV--QQAGETLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LEE +F G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Faecalibacterium prausnitzii SL3/3]
Length = 374
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 182/367 (49%), Gaps = 12/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI V
Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + KR +++K A++ D I S ITG I +N V
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIVRNHVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+ T DP A+++ ++ + +L+ L + S+L+EGG + S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ S +V + Y + + G +P+E + R + G D +E
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360
Query: 357 KNLCLQE 363
+ CL E
Sbjct: 361 EYPCLPE 367
>gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Mannheimia haemolytica PHL213]
gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Mannheimia haemolytica PHL213]
Length = 359
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 116/357 (32%), Positives = 172/357 (48%), Gaps = 12/357 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ A+ + G TS NP V C+IVK+G +I G G HAE A+ E+ GA
Sbjct: 1 MAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEEDLTGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L GI V
Sbjct: 61 TAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVVEDF 120
Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ KR ++ LK ++ D I S ITG ++ V R +
Sbjct: 121 MRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAARANVQKSRHE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG+ TVLADDP L R+ P+RI+ D + LDS++++TA II T
Sbjct: 181 YSAIMVGVETVLADDPMLNSRMEN--AKQPVRIVCDSQLRTPLDSQLVQTARQYRTIIAT 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINS 305
N+D + + I+ RD + LL L G+ SLL+EGG+ + S +
Sbjct: 239 LNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFSVLEQ 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
LV+ + Y + +IG +P+ + + G D+ L+Y
Sbjct: 299 GLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILLDYEVD 355
>gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
intermedia ATCC 29909]
gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
intermedia ATCC 29909]
Length = 369
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 171/366 (46%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+G +PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+S AIL TVLADDP LT R + L + + + + + + P
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWSELDAQTQA-LYPQDSLRQPVRIILDSHNRVTPE 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGG 295
VT+ + + DL L+ L R + S+ VE G
Sbjct: 243 HQVTQQNGLCWLARVEADQQPWPDNVEQLLLPRHGGGVDLVLLMMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + +VD +ILY + ++G + L F+ G D+
Sbjct: 303 PQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFVFSDVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 374
Score = 239 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 184/367 (50%), Gaps = 12/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI V
Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + KR ++++K A++ D I S ITG I++N V
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPYVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+ T DP A+++ ++ + +L+ L + S+L+EGG + S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ S +V + Y + + G +P+E + R + G D +E
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360
Query: 357 KNLCLQE 363
+ CL E
Sbjct: 361 EYPCLPE 367
>gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia proteamaculans 568]
gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568]
Length = 369
Score = 239 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 176/366 (48%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G+ V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ +L R ++ LK+ S D MA S IT ++ V
Sbjct: 124 RHGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
LRAQS AIL TVLADDP LT R + L + + + + L + + P
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRE-NLRQPLRIILDSQNRVTPQ 242
Query: 245 ---------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D + ++ + DL ++ L R V S+ VE G
Sbjct: 243 HRVVQQPGQTWLARLQPDEQIWPQDVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
A +A + + + LVD +ILY + ++G+ G LE F+ G D+
Sbjct: 303 AQLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEHLTDAPEFVFSEVRQIGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKAK 368
>gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
M21/2]
gi|158443838|gb|EDP20842.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii
M21/2]
Length = 374
Score = 239 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 12/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI V
Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + KR +++K A++ D I S ITG I++N V
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+ T DP A+++ ++ + +L+ L + S+L+EGG + S
Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ S +V + Y + + G +P+E + R + G D +E
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360
Query: 357 KNLCLQE 363
+ CL E
Sbjct: 361 EYPCLPE 367
>gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
1131]
gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
1131]
Length = 371
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 123/370 (33%), Positives = 181/370 (48%), Gaps = 17/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MIEQDNMYMARAFELARKGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ
Sbjct: 61 AGDKAQGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + + R +I LK+A S D + S IT ++
Sbjct: 121 GIETRSNVLLNDAEAANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARK 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKL 230
V LRA++ AIL TV+ADDP LT R N Q P+RI+LD H ++
Sbjct: 181 DVQALRAEASAILSTSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRV 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ K+ + ++ + D+ + ++ + DL L+ L R V S+
Sbjct: 241 TSGHKVTQLDGECWLVR-SNPDENAVWQGQVEQLAVPADENGTDLVILMMQLAKRNVNSI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
VE GA +A S + LVD +I+Y + ++G PL F
Sbjct: 300 WVEAGAKLAGSLLKLGLVDELIVYIAPKLLGNSARGLVDFPPLNALIDAPKFEFTEVKQV 359
Query: 347 GSDVCLEYIG 356
G D+ +
Sbjct: 360 GPDLRVRLRP 369
>gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
ATCC 35316]
gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
ATCC 35316]
Length = 367
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 180/366 (49%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEIYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + L+ R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMQDAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP +T R P+RI++D +++ +
Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + DD + + + DL L+ +L + V S+ VE
Sbjct: 242 HRIVHQPGE--TLFARTKDDSRQWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + +++G LE+ G D
Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPVLLGNDARGLFVLPGLEKLADAPQLKFSEIRPVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125]
gi|10174171|dbj|BAB05273.1| riboflavin specific
deaminase(diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase) [Bacillus halodurans C-125]
Length = 368
Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats.
Identities = 129/358 (36%), Positives = 183/358 (51%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M AL + G TS NP V ++VKDG ++G G G PHAEV A+ AGE+
Sbjct: 3 DEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAYVTLEPCSHYG++PPCA +IE G+ RVV+ +DP +VSGRG++ L Q GI V
Sbjct: 63 AKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEV 122
Query: 127 DRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + KR ++T+K A + D S IT ++ VH
Sbjct: 123 EVGICKQEALDLNRIFFHFVRTKRPYVTIKSATTLDGKTATVQGNSKWITSEQAREDVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + DAILVG+GTVLAD+P LT RL +P+R+ILD + LD +I
Sbjct: 183 YRHEHDAILVGVGTVLADNPSLTTRLAAGGL-NPVRVILDRRLRTPLDRNVITDGKAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
I E D A +K + + ++ +L L + + S+ VEGGA V SF+ +
Sbjct: 242 IFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLREKNILSVFVEGGATVNGSFVKA 301
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
VD +I Y + V G P+ + + F G DV + K
Sbjct: 302 GTVDQVITYLAPKVFGGAAAPTAIGGDGVIAVADALPFEVQEVIQIGPDVKIVARAKE 359
>gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
6301]
gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC
6301]
Length = 368
Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 189/367 (51%), Gaps = 8/367 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL +
Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q
Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQA 120
Query: 123 GIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E + A++ R ++R LK A++ D I + S ++ S+
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QVH LR+Q DA++VG TV D+P L + + + P+R+++ L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRL--TCHDISDRHPLRVVMSRRLDLPLEANLWQTDI 238
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
++ E D + + ++ ++ L RG+++LL E G +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
+ L+ ++ + + +IG SP+ + L + ++ + G D+C
Sbjct: 299 ALREGLIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358
Query: 357 KNLCLQE 363
+ QE
Sbjct: 359 DLVSGQE 365
>gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
mollaretii ATCC 43969]
gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
mollaretii ATCC 43969]
Length = 369
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 181/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 AHGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
RA+S AIL TVLAD+P LT R + L P+RIILD +++
Sbjct: 184 FRAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQH 243
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+I P + + D ++ + + + DL L+ L R + S+ VE
Sbjct: 244 KVI--QQDGPCWLARVDADEQPWPENIEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +ILY + ++G + L F+ G D+
Sbjct: 302 GPQLAGALLEAGVVDELILYIAPKLLGSDARGLCELAGLTSLSQAPEFVFSDVRQVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102]
Length = 407
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 180/366 (49%), Gaps = 16/366 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD+R M L +R +G TS NP V +IVKDG ++G G G PHAEV AL+ A
Sbjct: 36 TDFDSRMMLRCLELARRALGRTSPNPLVGAVIVKDGEIVGEGFHPRAGEPHAEVFALQAA 95
Query: 64 G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
G ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VVV + DP+ V+G G
Sbjct: 96 GVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVVGMVDPNPLVAGGG 155
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L GI V +E L+ ++ KR LK A++ D I S +
Sbjct: 156 IARLRAAGIEVLVGVEESACHQLNEAFVHRILYKRPLGILKYAMTLDGKIATTSGHSAWV 215
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T ++++VH LRA DAI+VG TV D+P LT H+P+R+++ H L +
Sbjct: 216 TSQEARSEVHQLRAACDAIIVGGNTVRQDNPYLTSHHLE--AHNPLRVVMSRHLNLPESA 273
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ KTA +++ + +P + + I+ + L RG S+L E
Sbjct: 274 HLWKTADAPTLVLTQKGANPDFQELLLNQGVEIVELTSLTPDNAMAYLYERGFCSVLWEC 333
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349
G +A S I V ++ + + +IG P+P+ + + VR GSD
Sbjct: 334 GGTLAASAIAQGAVQKVLAFIAPKIIGGSIAPTPVGDLGFTTMTEALSLERVRWRVVGSD 393
Query: 350 VCLEYI 355
+E
Sbjct: 394 CLVEGY 399
>gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031]
gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031]
Length = 372
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/372 (33%), Positives = 188/372 (50%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPC+HYGR+ PCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S IT ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
ATCC 43380]
gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
ATCC 43380]
Length = 369
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 181/367 (49%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATA+VTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 64 AQGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 NHGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
RA+S AIL TVLADDP LT R + P+RIILD H +++ +
Sbjct: 184 FRAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEH 243
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K T P + D A ++ + + + DL L+ L R + S+ VE
Sbjct: 244 K--VTQQDGPCWLARVEADTQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +ILY + ++G + L F+ G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGTDARGLCQLAGLTHLLQAPEFVFSEVRQVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|206578559|ref|YP_002240118.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
Length = 367
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 176/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEMYMARALKLATRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R + LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+R+++D +++ +
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I+ + D + + Y DL L+ +L + V S+ VE
Sbjct: 242 HRIV--QQAGETLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GA +A + + + LVD +I+Y + ++G LEE +F G D
Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359
Query: 350 VCLEYI 355
VCL
Sbjct: 360 VCLHLT 365
>gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202]
Length = 364
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 182/364 (50%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ FD +M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+
Sbjct: 1 MTDFD--YMARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILN 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ + RGATAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L
Sbjct: 59 SSADLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDA 118
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V E + KR ++ LK A++ D I + S ITG +++
Sbjct: 119 GIEVVTDFMREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGELARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 KVQETRHQYSAIMVGVETVLADNPMLNSRMPN--AKQPVRIVCDSSLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
II T +DD F+ + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTIIATVSDDLQKIAQFQPLGVDVLVCKAKDKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ S + + +V+ + Y + ++G +P+ + + G D+ L
Sbjct: 297 LNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQAVKLQLQSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 369
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M+++ + +L+R R + +K+ S D +A S IT ++
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTV+ADDP +T R+ P+R++LD + +
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRT--LACRNIRQG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + D +L + ++ DL +L +L RG+ + VEGGA ++ +
Sbjct: 247 DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 307 LLQAGLVDELLVYVAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRYAP 365
>gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
mendocina NK-01]
gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
mendocina NK-01]
Length = 371
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 180/369 (48%), Gaps = 14/369 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL +
Sbjct: 1 MSEHDQLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+G GL L
Sbjct: 61 AGDKARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + ESE + ++ R + +K A+S D MA S ITG ++
Sbjct: 121 GIEVRSGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
+V LRAQS +L G TVLADD LT R + Q P+R+++D ++
Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ + + DL+KLL L GRGV +L
Sbjct: 241 VSKAFFQVGPALVATCAAAAARDRYLADGHELLAVPGSNGHVDLRKLLLELAGRGVNEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F + LVD ++ + ++G P PL + G
Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARPLLDLPLNRMAEAPELQILDIRAVGD 360
Query: 349 DVCLEYIGK 357
D + + K
Sbjct: 361 DWQITALPK 369
>gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425]
Length = 392
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 182/362 (50%), Gaps = 9/362 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D M L +R G T+ NP V C+IVKDG ++G G G PHAEV AL AG
Sbjct: 23 DLDQIMMQRCLTLARQAQGQTAPNPLVGCVIVKDGEIVGEGFHPKAGEPHAEVFALRAAG 82
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A GAT YV LEPC+HYGR+PPC++ +++ GI RVVV + DPD RVSG G+ L GI
Sbjct: 83 DRAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGI 142
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E + A++ R R LK A++ D I A S IT ++ +V
Sbjct: 143 EVTVGVEEMACRDLNEAFIHRITYHRPFGILKYAMTLDGKIATAKGHSAWITDAAARTEV 202
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LRA D ++VG TV D+P+LT + ++ +P+RI++ L + + +T A
Sbjct: 203 HRLRAGCDGVIVGGNTVRRDNPQLTL--HEVEGRNPLRIVMSRSLDLPSQAHLWQTQAAA 260
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+++ + A + + + ++ D ++ L RG+ ++L E G +A I
Sbjct: 261 TLVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYDRGLLAVLWECGGRLAARAI 320
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE-YIGK 357
V + + + +IG PSP+ + L V+ GSD +E Y+
Sbjct: 321 AEGAVQKVWAFIAPKIIGGDQAPSPVGDLGLTTMTEALQLERVQWRTIGSDCLVEGYLPF 380
Query: 358 NL 359
NL
Sbjct: 381 NL 382
>gi|39996788|ref|NP_952739.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
gi|39983676|gb|AAR35066.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA]
gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter sulfurreducens KN400]
Length = 369
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 131/369 (35%), Positives = 192/369 (52%), Gaps = 12/369 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++SF M AL +R +G TS NP V C+IV++G+V+G G G PHAEV AL E
Sbjct: 1 MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGA YVTLEPCSH+GR+PPCA ++ G+ RV V + DP+ V G+G+ L
Sbjct: 61 AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E ++ ++ +TLK A++ D A S IT S+
Sbjct: 121 GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+ DA++VG+GT+LAD+PELT R +P+RII+D K+ +S+++ L
Sbjct: 181 YVHQLRAEVDAVMVGVGTLLADNPELTVRHVK--GKNPLRIIVDSSLKIPNESRVLGDDL 238
Query: 242 LAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
II T +DD + DL+ L+ L +G+ S+L+EGG+
Sbjct: 239 ARGTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSE 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+A + + L+D IL+ + IV+G +E+ R FG DV +
Sbjct: 299 LAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMI 358
Query: 353 EYIGKNLCL 361
E + C
Sbjct: 359 EAYPEEACS 367
>gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
Length = 372
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 123/372 (33%), Positives = 189/372 (50%), Gaps = 14/372 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ S+ +G T NP V +IVKD +IG G G HAE+ AL+ A E
Sbjct: 1 MDLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GAT YVTLEPCSHYG++PPC II+ GI++V++ + DP+ V+GRG + L GI
Sbjct: 61 DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + E K ++ K LK A++ D I S I+ +S+ VH
Sbjct: 121 VVEGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R + I+VGIGT++ D+P LT R+ + RII+D ++ +++K++ A
Sbjct: 181 EIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAK 240
Query: 245 VIIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
IIV V+ + I + + DLK L+ L R + S+L+EGGA +
Sbjct: 241 TIIVTTELANREKIEVIRDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAELN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
+S +N +VD +I + S +IG +P+E N ++ F D+ +E
Sbjct: 301 YSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTISEGINLENIKVSRFQEDIVIEG 360
Query: 355 IGK---NLCLQE 363
K LC QE
Sbjct: 361 YIKGEEKLCSQE 372
>gi|332290249|ref|YP_004421101.1| hypothetical protein UMN179_02191 [Gallibacterium anatis UMN179]
gi|330433145|gb|AEC18204.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
Length = 372
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 118/369 (31%), Positives = 181/369 (49%), Gaps = 15/369 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +FM+ A+ ++ + NP+V C++VK+G ++G+G G PHAEV A+
Sbjct: 5 EFSQQDHQFMALAIELAKKGRFTCTPNPAVGCVLVKNGEIVGKGYHEKAGEPHAEVMAMR 64
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAGE+A GATAYVTLEPCSHYGR+PPCA+ +IE G++RVV + DP+ +V+GRGL+ L+
Sbjct: 65 EAGEKANGATAYVTLEPCSHYGRTPPCAKGLIEAGVKRVVAAMQDPNPQVAGRGLKMLAD 124
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + + L+ R ++ LK+A+S D MA S ITG ++
Sbjct: 125 AGIETAVGLLQQQAEQLNKGFLKRMRTGFPYVQLKMAISIDGRTAMANGESQWITGEAAR 184
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSKII 237
V RA + AIL TVL D+ L R L L ++ LDS+
Sbjct: 185 QDVQQYRAMASAILSSSKTVLTDNAALNVRWQQLPLEVQSIYPQEKLRQPLRVILDSQHQ 244
Query: 238 KTAL------LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+P+++V+ + + + L LL +L + + S+
Sbjct: 245 IEPKGRLFESESPILLVSPSARNMAHFP-AFCQQQQLVESPYYLTDLLNLLGKQQINSVW 303
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFG 347
VE GA +A + I + LVD +I+Y + ++G+ L+ + G
Sbjct: 304 VEAGATLAGALIEAGLVDELIVYIAPKLLGDQAKGLCHLPQLQHLKDAPQWRLADVSLIG 363
Query: 348 SDVCLEYIG 356
DV L YI
Sbjct: 364 DDVKLVYIK 372
>gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii ATCC BAA-894]
gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894]
Length = 367
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 119/364 (32%), Positives = 170/364 (46%), Gaps = 16/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ + T NP V C+IVK+G+++G G G PHAEV AL AG++
Sbjct: 3 DEFYMARALKLAGQGRFTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ L+ R I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
LRA+S AIL TVLADDP +T R + L E + + + + L + + + P
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEETQAVYPRE-NLRQPLRIVLDRQNQVTPA 241
Query: 245 ---------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D + ++ ++ DL L+ L R V SL VE G
Sbjct: 242 HKIVNQPGETWLARACPDDTVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + LVD +I+Y + ++G LE G D+
Sbjct: 302 PQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQIGPDLR 361
Query: 352 LEYI 355
L
Sbjct: 362 LRLT 365
>gi|322834072|ref|YP_004214099.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
gi|321169273|gb|ADW74972.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602]
Length = 378
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 113/368 (30%), Positives = 168/368 (45%), Gaps = 16/368 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D +M+ A +R T+ NP+V C+IV +G ++G G G PHAEV AL A
Sbjct: 10 NPTDEHYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMA 69
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+A+GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G
Sbjct: 70 GEKAKGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPEVAGRGLYRLKQNG 129
Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + ++ +L R ++ LK+ S D MA S IT ++
Sbjct: 130 VDVSHGLMHPQAEAVNLGFLKRMRTGFPYVQLKMGASLDGRTAMASGESQWITSAAARAD 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V RA+S AIL TVLAD+P L R + L + + + L + +
Sbjct: 190 VQRFRAESSAILSTSATVLADNPSLNVRWSELGSEVQAIYP-EENLRQPLRVILDSQNRV 248
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLV 292
P V V + L+ L R + S+ V
Sbjct: 249 TPQHQVVNLPGEVWLARLEADTQVWPGSVEQWRVAGRDNRIDLVLLMMQLAKRQINSIWV 308
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
E GA +A + + + LVD +I+Y + ++G+ G L+ F+ GS
Sbjct: 309 EAGAQLAGALLQAGLVDELIVYMAPKLLGDNGRALCELPGLQHLADAPEFVFNDIRQVGS 368
Query: 349 DVCLEYIG 356
D+ L
Sbjct: 369 DLRLRLKP 376
>gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 356
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 109/358 (30%), Positives = 188/358 (52%), Gaps = 12/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL+ ++ +G T+ NP V +IVK+G +IG G Y G PHAE+ AL+ E+ GA
Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKEDVIGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
YVTLEPC HYG++PPC I++ GI+ V + ++DP+ VSG+G++ L + G+ V
Sbjct: 61 QLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVYTGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ E + ++ K+ ++ LK A++ D I S IT S+ VH++R
Sbjct: 121 LKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIMRGC 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG+ TV+ D+P LT R++G + P+R+++D ++ L++ ++ ++ T
Sbjct: 181 VMAIMVGVNTVIKDNPYLTARIDGFKN--PLRVVVDSRGRIPLEANVVIDKSAKTIVATT 238
Query: 250 ENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ A R + DLKKL+ +L RG+ S+++EGG + +S +
Sbjct: 239 DMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSALKE 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
+VD ++ Y + +IG +P+E + + F D+ +E K
Sbjct: 299 GIVDKVMFYIAPKIIGGSNSLTPVEGKGIDLIKDAIMIEKLDVKRFDDDILIEGYIKK 356
>gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittAA]
gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittAA]
Length = 372
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/376 (33%), Positives = 194/376 (51%), Gaps = 21/376 (5%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE A
Sbjct: 1 MSEFSSQDHVFMQRALDLATKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AGE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ L
Sbjct: 61 LAQAGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKML 120
Query: 120 SQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
S GI ++ + + +L R + + LK+A+S D MA S ITG
Sbjct: 121 SDAGIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSD 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
+++ V +RA+S A+L T++ADDP L R + E+ P+R+ILD
Sbjct: 181 ARSDVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQ 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
++ K+ T ++ +++P F II LK+L+ L R +
Sbjct: 241 HRIQPTHKLFLTYSPVWLV----SNEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQI 296
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
+L VE GA +A S I+++LVD +I+Y + ++G+ L + +
Sbjct: 297 NTLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNEL 356
Query: 344 DYFGSDVCLEYIGKNL 359
+ G D+ L Y K +
Sbjct: 357 EQIGDDIKLTYTPKGI 372
>gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 369
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 186/359 (51%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M+++ + +L+R R + +K+ S D +A S IT ++
Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTV+ADDP +T R+ P+R++LD + +
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRT--LACRNIRQG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + D +L + ++ DL +L +L RG+ + VEGGA ++ +
Sbjct: 247 DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRYAP 365
>gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter turicensis z3032]
gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032]
Length = 367
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 169/364 (46%), Gaps = 16/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ + T NP V C+IV DG+++G G G PHAEV AL AG++
Sbjct: 3 DEFYMARALKLASQGRFTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+ V
Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ L+ R I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
LRA+S AIL TVLADDP +T R + L E + + + + L + + + P
Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEATQAVYPRE-NLRQPLRIVLDRQNQVTPA 241
Query: 245 ---------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D + ++ ++ DL L+ L R V SL VE G
Sbjct: 242 HKIVNQPGETWLARACPDDAVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + LVD +I+Y + ++G LE G D+
Sbjct: 302 PQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDLR 361
Query: 352 LEYI 355
L
Sbjct: 362 LRLT 365
>gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 369
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 183/359 (50%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTVLAD+P +T RL P+R++LD + + I
Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDG-- 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + AL + + DL +L +L RG+ + VE GA ++ +
Sbjct: 247 DAPTLYLHGDAIAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E G D+ L Y
Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRYAP 365
>gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
ATCC 29473]
gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
ATCC 29473]
Length = 369
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 170/366 (46%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 4 DEIYMARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMAGDA 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ GIRRVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 EHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RAQS AIL TVLADDP L R L RI + + + + P
Sbjct: 184 FRAQSSAILSTSATVLADDPSLIVRWTELDA-DTQRIYPELALRQPTRIILDSQNRVTPA 242
Query: 246 IIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTSLLVEGG 295
V + Y + DL LL L R + S+ VE G
Sbjct: 243 HQVIRQPGDCWLARVDADQQHWPDNVDQLLLPRYGNGVDLVLLLMQLGKRQINSVWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
+A + + + +VD +ILY + ++G+ ++ F G D+
Sbjct: 303 PQLAGALLQAGVVDELILYVAPKLLGDNARGLCGLPGIDRLSQVPEFSFSDVTQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLKPK 368
>gi|148826406|ref|YP_001291159.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
gi|229846003|ref|ZP_04466115.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
gi|148716566|gb|ABQ98776.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE]
gi|229811007|gb|EEP46724.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1]
gi|309973554|gb|ADO96755.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2846]
Length = 372
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 190/372 (51%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSETRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866]
Length = 372
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAANLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TVL DDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ +++P F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLV----SNEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNKLEQ 358
Query: 346 FGSDVCLEYIGKNL 359
G D+ L Y K +
Sbjct: 359 IGDDIKLTYTPKGI 372
>gi|188534657|ref|YP_001908454.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
Length = 367
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+
Sbjct: 3 DEVYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+RGAT YVTLEPCSH+GR+PPC +I G++RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 SRGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
LRAQS AIL GTVLAD+P LT R + L P+R+I+D +++
Sbjct: 183 LRAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I + + P + I + D DL +L +L + + SL VE
Sbjct: 243 RLIAQPGE--TWLARTSSCPQQWPENVSQLIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA A + + + +VD +I+Y + ++G+ G LE F G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAGRALCQLPGLETLAAAPAFTFSDIRQVGPDL 360
Query: 351 CLEYIG 356
L
Sbjct: 361 RLTLTP 366
>gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 369
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 183/359 (50%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTVLAD+P +T RL P+R++LD + + I
Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDG-- 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + AL + + DL +L +L RG+ + VE GA ++ +
Sbjct: 247 DAPTLYLHGDAVAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E G D+ L Y
Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRYAP 365
>gi|21230168|ref|NP_636085.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66769842|ref|YP_244604.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. 8004]
gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. campestris str.
B100]
gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. 8004]
gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. campestris]
Length = 364
Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/362 (34%), Positives = 187/362 (51%), Gaps = 8/362 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M VS+ + R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL
Sbjct: 1 MSVSADNHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE+ARGATAYVTLEPC+HYGR+PPCA +I G+ RVV + DP +V+G G L
Sbjct: 61 RAAGEQARGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLR 120
Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +ME++ + +L+R R + +K+ S D MA S ITG +
Sbjct: 121 DAGIQVHSGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
+ V RA++ IL G GTVLADDP +T RL P+R++LD + + I +
Sbjct: 181 RADVQRWRARAGVILTGAGTVLADDPSMTVRLGEDTPCVPPLRVVLDAGLRTLACANIRQ 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
AP + + D A + ++ DL +L L RG+ + VE GA +
Sbjct: 241 G--DAPTLYLHGADVTAPAFDGAEFAAMPLHAGRFDLAAVLASLAERGINEVHVEAGATL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + + + LVD +++Y + +++GE P ++ + + G D+ L Y
Sbjct: 299 SGALLQAGLVDELLVYMAPVLLGETARPLLAGLGIDTMAQRHALQLLDVRHIGQDLRLRY 358
Query: 355 IG 356
Sbjct: 359 AP 360
>gi|78222833|ref|YP_384580.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Geobacter metallireducens GS-15]
gi|78194088|gb|ABB31855.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Geobacter
metallireducens GS-15]
Length = 370
Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 14/373 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M VS + M AL +R G TS NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 1 MDVSP--EKIMKRALALARRGKGKTSPNPAVGCVIVRDGAIVGEGWHRKAGTPHAEVHAL 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARGA YVTLEPCSH+G++PPCA ++E G+ RV V + DP+ +VSGRG++ L
Sbjct: 59 RQAGELARGADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLR 118
Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G +V + E+E + ++ + LK A++ D A S IT S
Sbjct: 119 VAGIEVVTGIREAECRRLNEPFVKHVTTGLPFVILKSAMTMDGKTATASGDSRWITNEKS 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LR+ DAI+VG+GTVLADDP+LT R+ P+R+++D ++ ++++
Sbjct: 179 RRYVHKLRSMVDAIMVGVGTVLADDPQLTARIPR--GKDPVRVVVDSSLRIPSGARMLHQ 236
Query: 240 ALLAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
A ++ T ++D A + DL+ LL L RGV S+L+EGG
Sbjct: 237 ESPATTVVATVSEDRNRIVKLESAGAEVLRCHAVMGRIDLRDLLARLGARGVQSILLEGG 296
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
+ +A + + L+D +L+ + +G E+ V FG DV
Sbjct: 297 SELAGEALRAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRLKDVSVRRFGDDV 356
Query: 351 CLEYIGKNLCLQE 363
+E ++LCL
Sbjct: 357 MIEAYPEDLCLPG 369
>gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630]
gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42]
gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255]
gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Clostridium difficile]
Length = 370
Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 173/365 (47%), Gaps = 12/365 (3%)
Query: 1 MPV---SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV
Sbjct: 1 MNFVNQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A+ A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++
Sbjct: 61 NAINSAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVK 120
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L I V + E E + A+ KR +K AVS D I S I+
Sbjct: 121 KLKDNNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISN 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S +
Sbjct: 181 ESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNL 240
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVE 293
+K ++ + L++ II +L L ++ G + S+LVE
Sbjct: 241 VKDKTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
GGA + S ++LVD + L+ S +IG P+ + +
Sbjct: 301 GGATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDG 360
Query: 349 DVCLE 353
D+ +E
Sbjct: 361 DILIE 365
>gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum
thermopropionicum SI]
gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum
thermopropionicum SI]
Length = 376
Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 132/362 (36%), Positives = 192/362 (53%), Gaps = 10/362 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL + G TS NP V ++VK+G+V+G+G G PHAE+ AL+EAG
Sbjct: 2 DDRYYMNMALELAARARGRTSPNPMVGAVLVKNGVVVGQGYHMKAGTPHAEIIALKEAGN 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
EARGAT YV LEPC HYGR+ PCA +IE G+ RVV + DP+ V+G GL+ + + G+
Sbjct: 62 EARGATLYVNLEPCCHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAGLE 121
Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +ME E + A++ +R + K A+S D I S ITG ++ VH
Sbjct: 122 VTLGVMEDEARELNEAFIKYVTTRRPFVLAKAALSLDGKIAARTGRSKWITGPAARAYVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR DAILVGIGT+LADDP LT RL G P+R+ILD + L++++IK AP
Sbjct: 182 QLRDWYDAILVGIGTILADDPSLTARLPGGGGRDPVRVILDSLARTPLNARVIKQKSKAP 241
Query: 245 VIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I P + + + DL +L+ IL + +TS+L+EGGA V
Sbjct: 242 TVIAVTAGAPPGRVKALQEAGAQVVVVNSGPRVDLPELMRILAEKEITSVLIEGGAEVHG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
S + +VD + + + +IG P P+ + ++ D+C+E
Sbjct: 302 SAFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEGVDDPGGALELERIKVSRLDQDICIEGY 361
Query: 356 GK 357
K
Sbjct: 362 VK 363
>gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str.
306]
gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 369
Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L + G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M+++ + +L+R R + +K+ S D +A S IT ++
Sbjct: 129 IEVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTV+ADDP +T R P+R++LD + +
Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRT--LACRNIRQG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + +L + ++ DL +L +L RG+ + VEGGA ++ +
Sbjct: 247 DAPTLYLHGENVAAQSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRYAP 365
>gi|197283994|ref|YP_002149866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis HI4320]
gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis HI4320]
Length = 385
Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 171/364 (46%), Gaps = 16/364 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AG
Sbjct: 16 ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI
Sbjct: 76 ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L+ +++ +I LK+A S D +A S IT S+ V
Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSL 232
RAQ+ AIL TVLADDP + R P+RII D +++
Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTP 255
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
D KI + A + + DL L+ L R + S+ V
Sbjct: 256 DYKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSVWV 315
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
E GA A + + LVD +I+Y + ++G SPL F G
Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQIGP 375
Query: 349 DVCL 352
D+ +
Sbjct: 376 DIRV 379
>gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 379
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEETCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD + + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTNLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I+V + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18]
Length = 374
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 128/363 (35%), Positives = 195/363 (53%), Gaps = 11/363 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S+ + M AL +R VG T+ NP+V C+IV+DG V+G+G G PHAEV AL
Sbjct: 1 MSADHLKMMRLALSEARKGVGKTAPNPAVGCVIVRDGEVVGKGWHKKAGTPHAEVHALRA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG++ L
Sbjct: 61 AGELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E+E ++ + KR ++ LK A++ D A S +T S+
Sbjct: 121 GIEVEVGLLEAESLEINRPFVKWILTKRPYVVLKSALTLDGKSATATGDSKWVTCDRSRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LR + DAI+VG+GTV+ DDP LTCR+ G P+R+I+D ++ + +
Sbjct: 181 EVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPG--GKDPLRVIVDSTLRIPRHAALFSLRS 238
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A +I T D A + D LLT L RGV S+L+EGG+
Sbjct: 239 EAKTVIATCCADLARIDAVAAHGVEVLVCNEKDGRVDPDDLLTKLGERGVQSILLEGGSH 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A +F+ + L+D +L+ + ++G G + + ++ G D+ +E
Sbjct: 299 LAGAFLRAGLIDRCMLFLAPKLVGGAGMGLFAGAGVNLMADAIRLEEMKVKRIGVDLLVE 358
Query: 354 YIG 356
+
Sbjct: 359 GVP 361
>gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
6P18H1]
gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
6P18H1]
Length = 372
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 125/374 (33%), Positives = 193/374 (51%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE A+GA AYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENAKGAIAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L T++ADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ +++P F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLV----SNEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGKNL 359
G D+ L Y K +
Sbjct: 359 IGDDIKLTYTPKGI 372
>gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4]
Length = 370
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 129/367 (35%), Positives = 181/367 (49%), Gaps = 12/367 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D FM AL + G TS NP V ++VK+G VI G G PHAE++AL
Sbjct: 1 MENLKEDEFFMRRALELALKARGRTSPNPMVGAVLVKEGRVIAEGYHRRAGMPHAEIEAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGEEARGAT YV LEPC H GR+ PC + II GI+RVVV ++DP+ V+G+G++ L
Sbjct: 61 RAAGEEARGATLYVNLEPCCHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V + E E + ++ + + LK+A++ D I + + ITG +
Sbjct: 121 EAGLEVTVGVLEQEARRLNEVFVKFITTREPFVVLKVAMTLDGKIATSTGEARWITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LR DAILVG GTVL DDP LT R P+R+IL L L ++++
Sbjct: 181 RAYVHELRDTYDAILVGKGTVLKDDPSLTAR--LPGARDPVRVILSSLADLPLSARVLNL 238
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
AP + P + + DLK LL L R +T +LVEGG
Sbjct: 239 NSSAPTWVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDLKLLLKELGRREITGVLVEGG 298
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDV 350
V SF+ +RLVD +I + + G P P+ +E + G+D
Sbjct: 299 GTVNASFLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVEHPDRALRLKDLTVKKLGADF 358
Query: 351 CLEYIGK 357
C E +
Sbjct: 359 CFEGYPE 365
>gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63]
gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08]
gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07]
Length = 370
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 171/365 (46%), Gaps = 12/365 (3%)
Query: 1 MPV---SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV
Sbjct: 1 MNFVNQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDDYIIGKGYHEKFGSNHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A+ A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++
Sbjct: 61 NAINSAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVK 120
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L I V E E + + KR +K AVS D I S I+
Sbjct: 121 KLRDNNIDVTVGTLEEEARDLNEVFFYYIKNKRPLCIVKSAVSLDGKIATKSLESKWISN 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S +
Sbjct: 181 ESSRYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNL 240
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVE 293
+K ++ + L++ II +L L ++ G + S+LVE
Sbjct: 241 VKDKTSKTIVFTCCKESKKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
GGA + S +RLVD + L+ S +IG P+ + +
Sbjct: 301 GGATLNDSLFRNRLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLAINNVTLIDG 360
Query: 349 DVCLE 353
D+ +E
Sbjct: 361 DILIE 365
>gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM
2379]
gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter
propionicus DSM 2379]
Length = 367
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 118/367 (32%), Positives = 187/367 (50%), Gaps = 11/367 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M AL +R +G TS NP+V C+IVKDG+++G G G HAE+ ALE AG
Sbjct: 2 TDDIRQMKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
E ARGA +VTLEPC H G++PPC+Q +I G+RRVV + DP+ RVSG GL L G
Sbjct: 62 ESARGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGI 121
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V ++E E + ++ + H+T K A++ D I S I+ S+ V
Sbjct: 122 QVVCGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +RA+ DAI+VG+ T++ADDP+LT R +P+R+++D + +++
Sbjct: 182 HRMRARMDAIMVGVDTIIADDPQLTVRHVR--GRNPLRVVVDTRLRTPESVRVLGDGNAV 239
Query: 244 PVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+I T +P + L ++ + + +K L+ L RGV S+L+EGG +A
Sbjct: 240 NTLIATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYI 355
S + L+D + + + ++G G ++ G D+ +
Sbjct: 300 GSMLEQGLIDEFVFFLAPKILGSDGFSPFSLVGRTSMEQASRLNIIKVSRSGIDIVVHAR 359
Query: 356 GKNLCLQ 362
+ C
Sbjct: 360 SEAPCSP 366
>gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 361
Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 186/364 (51%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I + S ITG +++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGELARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y
Sbjct: 357 DYEV 360
>gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18]
Length = 379
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI V
Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHSIRVILDTHLRTPPSSHVITDTLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ KNI I + ++ +L +L + + SL +EGG V SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG G P+ K + G D+ + +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 379
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I+V + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 311 QAKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|145632331|ref|ZP_01788066.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
gi|144987238|gb|EDJ93768.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655]
Length = 372
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 126/372 (33%), Positives = 190/372 (51%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TV+ADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSLHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ D F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTHSPVWLVSSETRD----LTGFPDFCEQIILPKENLLKELMRELGKRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGK 357
G D+ L Y K
Sbjct: 359 IGDDIKLTYTPK 370
>gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Faecalibacterium prausnitzii L2-6]
Length = 374
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 181/367 (49%), Gaps = 12/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++ K+G +IG+G G HAE AL E+
Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKEGRIIGQGWHQRYGQAHAERNALASCTED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPC HYG+ PPC I+ GI RVVV DP+ V+G+G+ L GI V
Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGIDV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + KR +++K A++ D I S ITG I++N V
Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P
Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+ T DP A+++ ++ + +L+ L + S+L+EGG + S
Sbjct: 241 ILATCCGDPEKQAAYQQDGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ S +V + Y + + G +P+E + R + G D +E
Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360
Query: 357 KNLCLQE 363
+ CL E
Sbjct: 361 EYPCLPE 367
>gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29]
Length = 379
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 186/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI V
Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +R+ILD H + S +I AL
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHSIRVILDTHLRTPPSSHVITDALAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ KNI I + ++ +L +L + + SL +EGG V SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG G P+ K + G D+ + +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|58583479|ref|YP_202495.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
[Xanthomonas oryzae pv. oryzae KACC10331]
gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
[Xanthomonas oryzae pv. oryzae KACC10331]
gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 369
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 184/359 (51%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTVLADDP +T RL P+R++LD + +
Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLRT--LACKNIRNG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + AL + ++ DL +L +L RG+ + VE GA ++ +
Sbjct: 247 DAPTLYLHGDAVAATALDGAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLRYAP 365
>gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 364
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 112/364 (30%), Positives = 184/364 (50%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + K ++ +K A++ D I S ITG ++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 369
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 177/367 (48%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A R TS NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + ++ +L R ++ LK+A S D MA S IT ++ V
Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
RA+S AIL TVLADDP LT R P++IILD H +++
Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTP-- 241
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ P + + D ++ + Y + DL L+ L R + S+ VE
Sbjct: 242 RHKVIQQDGPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + +VD +ILY + ++G + L F G D+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
Length = 372
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFK 229
+ V +RA+S A+L TVLADDP L R + E+ P+R+ILD +
Sbjct: 183 SDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHR 242
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ K+ T ++ +++P F II LK+L+ L R + +
Sbjct: 243 IQPTHKLFLTYSPVWLV----SNEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A S I+++LVD +I+Y + ++G+ L + + +
Sbjct: 299 LWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQ 358
Query: 346 FGSDVCLEYIGKNL 359
G D+ L Y K +
Sbjct: 359 IGDDIKLTYTPKGI 372
>gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 379
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 185/365 (50%), Gaps = 14/365 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 15 TMTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVL 72
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 73 HCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQ 132
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 133 AGVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESAR 192
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 193 ARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTA 250
Query: 241 LLAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I T DD FR + DL+ LL L + SLL+EGG+
Sbjct: 251 KEYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGS 310
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
++ S + S +V+ + Y + ++G +P+ +++ + G D+
Sbjct: 311 SLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDIL 370
Query: 352 LEYIG 356
L+Y+
Sbjct: 371 LDYVV 375
>gi|170717790|ref|YP_001784854.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
gi|168825919|gb|ACA31290.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336]
Length = 376
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 180/371 (48%), Gaps = 17/371 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL
Sbjct: 4 TFSAQDEYFMQIALDLAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L
Sbjct: 64 DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + E L+ TR ++ + LK+A+S D MA S I+G ++
Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
V RA+ AIL TVLADDP L R P+RIILD
Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEDVRQPVRIILDRQHL 243
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
++ K+ + ++ E D + + L+ + R + S
Sbjct: 244 VTPRHKLFQCQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIEL-AKRQINS 302
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
L +E G +A +FI LV+ +I+Y + ++G L+ + +
Sbjct: 303 LWLEAGETLAGAFIEENLVNELIIYMAPKLLGNKARGFCHLPHLKRLADAPKWQLLSLAQ 362
Query: 346 FGSDVCLEYIG 356
G D+ L Y
Sbjct: 363 IGEDIKLNYQR 373
>gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 364
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 185/364 (50%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822]
Length = 369
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 190/360 (52%), Gaps = 9/360 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+FD M + +R +G TS NP V +IV++ ++G G G PHAEV AL A
Sbjct: 10 SAFDREMMQRCITLARKALGATSPNPMVGAVIVREQEIVGEGFHPGAGQPHAEVFALSVA 69
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+A+GAT Y+ LEPC+HYGR+PPC + +I+ GI +V+V + DPD RVSG+G++ L++ G
Sbjct: 70 AEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTEAG 129
Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+V + E + ++ R + +R LK A++ D I S +TG S+
Sbjct: 130 IEVVAGIEEEACRRLNEGFIHRVLYQRPFGILKYAMTLDGKIAATSGHSAWVTGEASRRI 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA DA+++G TV D+P LT H+P+R+++ L L++ + +T +
Sbjct: 190 VHQLRAACDAVIIGGNTVRQDNPHLTTHGVS--SHNPLRVVMSRSLNLPLEANLWETDKV 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V+ E +P L K+ + +I + +++ L RG S+L E G +A S
Sbjct: 248 PTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQHLYQRGFCSVLWECGGTLAASA 307
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
I +V ++ + + +IG PSP+ + L+K V +D +E Y+
Sbjct: 308 ITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDKMSNALQLQRVALQRVDNDFVIEGYLP 367
>gi|78046354|ref|YP_362529.1| riboflavin biosynthesis protein RibD
(diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 369
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 119/359 (33%), Positives = 184/359 (51%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
RA++ AIL G GTV+ADDP +T R + P+R++LD + +
Sbjct: 189 GQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRT--LACRNIRQG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + +L + + DL +L +L RG+ + VE GA ++ +
Sbjct: 247 NAPTLYLHGENVAAPSLDDAQFLAMPLQAGRFDLAAVLALLAERGINEVHVEAGAMLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRYAP 365
>gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZC1]
gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis
ZC1]
Length = 370
Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 10/365 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D ++M AL + G T+ NP V +IVK+G+++G G+ G PHAEV A
Sbjct: 1 MMNVDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNGVIVGTGLHRKAGEPHAEVHAFRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A GAT YVTLEPCSHYG++PPCA + E G+ RVVV + DP+ V+GRG+Q L
Sbjct: 61 AGEHAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI+V+ + E + + ++ + R + K A++ D I S +TG ++
Sbjct: 121 GIVVEVGVLEQQARRLNERFIHNMLTHRPFVISKFAMTLDGKIATHTGHSKWVTGEAARE 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +R + D ILVG+GTV+AD+P LT RL +P RII+D + ++ ++ T
Sbjct: 181 DVHNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRIIMDSSLRTPDNANVLNTED 240
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+++ +++ F +K + ++L L G+T +L+EGG+
Sbjct: 241 APTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEMLEKLYMHGITDILLEGGSK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352
+ SF+ +D ++Y + V+G +P N D G D+ +
Sbjct: 301 INASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMDEAWNVEFASFDKIGEDLRI 360
Query: 353 EYIGK 357
K
Sbjct: 361 IAYPK 365
>gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
raciborskii CS-505]
gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis
raciborskii CS-505]
Length = 385
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 115/362 (31%), Positives = 179/362 (49%), Gaps = 9/362 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S FDA M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A
Sbjct: 14 SEFDALMMQRCLELARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 73
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L G
Sbjct: 74 GERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAG 133
Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +E E L+ +V ++ LK A++ D I S IT ++++
Sbjct: 134 IEVIIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLDGKIASNSGHSTWITNSQARSE 193
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA DA++VG TV D+P LT ++P+R+++ L ++ + T +
Sbjct: 194 VHQLRAACDAVIVGGNTVRRDNPHLTTHQQT--GYNPLRVVMSASLNLPENAHLWDTRVA 251
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+++ E P +K + ++ ++ L RG ++L E G +A
Sbjct: 252 PTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARA 311
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YIG 356
I V ++ + + +IG P+P+ + L V G D +E Y+
Sbjct: 312 IAENAVQKVLAFIAPKIIGGIDAPTPVGDLGLSSMTESLVLERVNWRTIGCDFLVEGYLP 371
Query: 357 KN 358
+
Sbjct: 372 QK 373
>gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 370
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I+V + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708]
Length = 375
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 181/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S FD+ M L+ +R +G TS NP V ++V+D ++G G G PHAEV AL
Sbjct: 11 MVGSEFDSLMMQWCLQLARRALGRTSPNPLVGAVVVQDREIVGEGFHPRAGEPHAEVFAL 70
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE+A GAT YV+LEPC+HYGR+PPC++ +I GI +VVV + DP+ V+G G+ L
Sbjct: 71 RAAGEKAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLR 130
Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + E+ + ++ R V K+ LK A++ D I + S IT +
Sbjct: 131 AAGIEVLVGVEEAACRQLNEGFIHRIVHKQPLGILKYAMTLDGKIATSSGHSAWITNPDA 190
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+++VH LRA DA++VG TV D+P L + ++P+R+++ L D+++
Sbjct: 191 RSEVHQLRAACDAVIVGGNTVRQDNPFL--TCHQWDGNNPLRVVMSRSLNLPEDARLWNV 248
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
A +++ P K + +I ++ L G S+L E G +A
Sbjct: 249 AEAPTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYELGFCSVLWECGGTLA 308
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE- 353
S I V I+ + + +IG P+P+ + V GSD +E
Sbjct: 309 ASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFTTMTEALRLEKVCWRVVGSDCLVEG 368
Query: 354 YIGKN 358
Y+ +
Sbjct: 369 YLPEK 373
>gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis ATCC 29906]
gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis ATCC 29906]
Length = 385
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 172/364 (47%), Gaps = 16/364 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AG
Sbjct: 16 ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI
Sbjct: 76 ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L+ +++ +I LK+A S D +A S IT S+ V
Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSL 232
RAQ+ AIL TVLADDP + R P+RII D +++
Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTP 255
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
D KI + A + + DL L+ L R + S+ V
Sbjct: 256 DYKITQLAGECLLARTHSQQEDWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSIWV 315
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
E GA A + + LVD +I+Y + ++G+ SPL F G
Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGDDARGLLSISPLSSLSESPEFTIDSLQQIGP 375
Query: 349 DVCL 352
D+ +
Sbjct: 376 DIRV 379
>gi|313902290|ref|ZP_07835695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermaerobacter subterraneus DSM 13965]
gi|313467441|gb|EFR62950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermaerobacter subterraneus DSM 13965]
Length = 443
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 133/368 (36%), Positives = 190/368 (51%), Gaps = 15/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D FM AL + G T NP V +IV+DG+V+G G G PHAEV+AL A
Sbjct: 38 EADRHFMRRALDLAARAGGRTHPNPMVGAVIVRDGVVVGEGYHRRAGEPHAEVEALRSAR 97
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++ARGAT YVTLEPC H+GR+PPC + I+ G+RRVVV + DPD RV+GRGL L+Q G+
Sbjct: 98 DQARGATLYVTLEPCCHHGRTPPCTEAILAAGLRRVVVAMVDPDPRVAGRGLSVLAQAGV 157
Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E++ + L+ R +T K A++ D I A S ITG ++ V
Sbjct: 158 EVAVGVEADRALRLNEAYVVHRVLGRPMVTAKYAMTLDGRIATARGESRWITGPRARRWV 217
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT--AL 241
H LR + DAILVG+GTVLADDP LT R + P+R+ILD H + D+++I+
Sbjct: 218 HRLRDRVDAILVGVGTVLADDPSLTVRWHP-GGRDPVRVILDSHARTPPDAQVIRAARHS 276
Query: 242 LAPVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
AP + P + A + + + LL L RG+ LLVEGG
Sbjct: 277 PAPTWVAVTPQAPAVRTARLEAAGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGG 336
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350
A+V SF + LVD ++ + + ++G P P+ + + G D
Sbjct: 337 ASVHGSFFAAGLVDRVVAFIAPKLVGGRAAPGPIGDPGVDALAAAPALHRPTWRRIGEDW 396
Query: 351 CLEYIGKN 358
+ ++
Sbjct: 397 MISGYLRD 404
>gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Haemophilus somnus 129PT]
gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus
somnus 129PT]
Length = 376
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 180/371 (48%), Gaps = 17/371 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL
Sbjct: 4 TFSAQDEYFMQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L
Sbjct: 64 DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + E L+ TR ++ + LK+A+S D MA S I+G ++
Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
V RA+ AIL TVLADDP L R P+RIILD
Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHL 243
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
++ K+ + ++ E D + + L+ + R + S
Sbjct: 244 VTPRHKLFQCQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIEL-AKRQINS 302
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
L +E G +A +FI LV+ +I+Y + ++G L+ + +
Sbjct: 303 LWLEAGETLAGAFIEENLVNELIIYMAPKLLGNEARGFCHLPHLKRLADAPKWQLLSLAQ 362
Query: 346 FGSDVCLEYIG 356
G D+ L Y
Sbjct: 363 IGEDIKLNYQR 373
>gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus elongatus PCC 7942]
gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Synechococcus elongatus PCC 7942]
Length = 368
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/367 (29%), Positives = 188/367 (51%), Gaps = 8/367 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL +
Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q
Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQA 120
Query: 123 GIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E + A++ R ++R LK A++ D I + S ++ S+
Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QVH LR+Q DA++VG TV D+P L + + + P+R+++ L L++ + +T +
Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRL--TCHDISDRHPLRVVMSRRLDLPLEANLWQTDI 238
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
++ E D + + ++ ++ L RG+++LL E G +A +
Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
+ + ++ + + +IG SP+ + L + ++ + G D+C
Sbjct: 299 ALREGQIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358
Query: 357 KNLCLQE 363
+ QE
Sbjct: 359 DLVSGQE 365
>gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 364
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + K ++ +K A++ D I S ITG ++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
++ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28]
Length = 379
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI V
Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIKV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +R+ILD H + S II L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHSIRVILDTHLRTPPSSHIITNTLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ KNI I + ++ +L +L + + SL +EGG V SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG G P+ K + G D+ + +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
DSM 771]
gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans
DSM 771]
Length = 367
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 189/367 (51%), Gaps = 15/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL + G TS NP V +IVK+G V+GRG G PHAE+ AL+EAGE
Sbjct: 1 MDEQYMKMALDLAARARGRTSPNPMVGSVIVKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
ARGAT YVTLEPC H+GR+ PC + I+ GI+R VV + DP+ V+G+GL L + G
Sbjct: 61 AARGATIYVTLEPCCHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGVE 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V ++ E ++ + LK A+S D I S ITG S+ VH
Sbjct: 121 VVSGLLAEEAAKLNEVFIKYVSTGMPFVLLKTAMSLDGKIAAYTGHSRWITGSASRAYVH 180
Query: 185 LLRAQSDAILVGIGTVLADDP----ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
LR DAIL+GIGT++AD+P L+C +G++ P+R+I+D + ++K++
Sbjct: 181 HLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGKDPVRVIVDSLARTPPEAKVLTQI 240
Query: 241 LLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
AP II P +A + I DL L L +TS+L+EGGA
Sbjct: 241 SAAPTIIAITAAAPEERVQKLVAAGAQIIIAGNGPKIDLPYLFKSLTAIDITSILIEGGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
AV S + +L D ++ + + +IG P P+ + + F D+C
Sbjct: 301 AVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGRGVAAVSEALLLERISVQRFEEDIC 360
Query: 352 LE-YIGK 357
LE Y+ K
Sbjct: 361 LEGYLRK 367
>gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 379
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 14/365 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 15 TMTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVL 72
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 73 HCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQ 132
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 133 AGVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESAR 192
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 193 ARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTA 250
Query: 241 LLAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I T +DD FR + DL+ LL L + SLL+EGG+
Sbjct: 251 KEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGS 310
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
++ S + S +V+ + Y + ++G +P+ +++ + G D+
Sbjct: 311 SLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDIL 370
Query: 352 LEYIG 356
L+Y+
Sbjct: 371 LDYVV 375
>gi|8039802|sp|P50853|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
Length = 376
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 14/365 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 12 TMTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVL 69
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 70 HCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQ 129
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 130 AGVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESAR 189
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 190 ARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTA 247
Query: 241 LLAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I T +DD FR + DL+ LL L + SLL+EGG+
Sbjct: 248 KEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGS 307
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
++ S + S +V+ + Y + ++G +P+ +++ + G D+
Sbjct: 308 SLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDIL 367
Query: 352 LEYIG 356
L+Y+
Sbjct: 368 LDYVV 372
>gi|169634649|ref|YP_001708385.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter baumannii SDF]
gi|169153441|emb|CAP02583.1| bifunctional protein [Includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) ] [Acinetobacter baumannii]
Length = 361
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPRAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSSGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRPLHNVDIETVAQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +L+E G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLIEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ L+D +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
137 str. F0430]
Length = 386
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 130/361 (36%), Positives = 189/361 (52%), Gaps = 8/361 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AG
Sbjct: 23 ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRAAGEPHAEIHALRMAG 82
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI
Sbjct: 83 ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 142
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + +L V KR +TLK A++ D S ITG ++ +V
Sbjct: 143 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARMRV 202
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R DAILVGIGTVLAD+P LT RL +P+R++LD + D+K++
Sbjct: 203 HEWRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 262
Query: 244 PVIIVTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+I V+E P L + + D+ L+ L +TS+ VEGGA+V S
Sbjct: 263 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 322
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
F+++ LVD + + + +++G P+ + E + G+D+ +
Sbjct: 323 FLSAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRLTDTTVERVGADILMTGYP 382
Query: 357 K 357
+
Sbjct: 383 Q 383
>gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
33393]
gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
33393]
Length = 374
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 130/372 (34%), Positives = 182/372 (48%), Gaps = 17/372 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S DA FM AL ++ T+ NPSV C++VKDG V+G+G A G PHAEV AL
Sbjct: 4 PFSPQDAAFMQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAGE+ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ LS
Sbjct: 64 EAGEKARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSD 123
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + E L+ R + + LK+A+S D MA S ITG ++
Sbjct: 124 AGIQSAVGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS--------- 231
V RA++ AIL TVLADDP L R L +
Sbjct: 184 ADVQQYRAKASAILSTSQTVLADDPSLNVRWEELPLDVKA-SYAQEKLRQPVRVILDSSH 242
Query: 232 -LDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ S + +PV +V E D F L+ L+ L R + +
Sbjct: 243 KVRSDFKVFSTESPVWLVGEEDYSLTDFPPFTDYLKLDRNQGETRLQSLMAELGKRQINT 302
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A + I LVD +I+Y + ++G+ L + + +
Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTQLADAPLWQLQSCEP 362
Query: 346 FGSDVCLEYIGK 357
G D+ L YI K
Sbjct: 363 VGDDLKLIYIRK 374
>gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
L20]
gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae]
gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 410
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 14/365 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 46 TMTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVL 103
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 104 HCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQ 163
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 164 AGVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESAR 223
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 224 ARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTA 281
Query: 241 LLAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I T +DD FR + DL+ LL L + SLL+EGG+
Sbjct: 282 KEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGS 341
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
++ S + S +V+ + Y + ++G +P+ +++ + G D+
Sbjct: 342 SLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDIL 401
Query: 352 LEYIG 356
L+Y+
Sbjct: 402 LDYVV 406
>gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108]
gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102]
Length = 370
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus thuringiensis str. Al Hakam]
gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus thuringiensis str. Al Hakam]
gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1]
Length = 379
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[butyrate-producing bacterium SS3/4]
Length = 369
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 178/366 (48%), Gaps = 20/366 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ +G TS NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKDGRIIGEGYHERCGELHAERNAIASLTES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ V+G+G L G+ V
Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGVRV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + +K ++ +K A++ D I S ITG ++ +V
Sbjct: 123 EEDFMREECDALNPVFFHYITKKTPYVVMKYAMTADGKIAARTGDSKWITGESARKKVQE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR Q I+ GIGTVLADDP L R+ G SP+RII D ++ +DS+I+KTA
Sbjct: 183 LRHQYMGIMAGIGTVLADDPMLNVRIPG--LKSPVRIICDSGLRIPMDSQIVKTAKEYRT 240
Query: 246 IIVTENDD------------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I+ + L A + DL+KL+ L +G+ S+L+E
Sbjct: 241 IVAYAGEHSGEGCKEAEEKEEQLHTAGVETVSVPDADGRVDLRKLMEYLGKQGIDSVLLE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
GG + + +++ +V+ I + + + G G +P+ + + + G
Sbjct: 301 GGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPVSGIGVAHPAEAVKLTLRQMETIGD 360
Query: 349 DVCLEY 354
D+ L Y
Sbjct: 361 DLMLRY 366
>gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 364
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 187/364 (51%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I S ITG +++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T +DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
8_1_57FAA]
gi|149832246|gb|EDM87331.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174]
gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
8_1_57FAA]
Length = 395
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 180/374 (48%), Gaps = 19/374 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G +
Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+ GIGTVLADDP L R+ G + P+RI+ D ++ S+I+K+A
Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSKLRIPPGSQIVKSAEKYRT 260
Query: 246 IIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ + + DLKKL+ L RG+ S+L+EGG +
Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
S + + +V + + + + G +P+E +E G D+ ++
Sbjct: 321 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380
Query: 354 ----YIGKNLCLQE 363
+ CLQE
Sbjct: 381 QVCDKKQEESCLQE 394
>gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399]
Length = 369
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 131/361 (36%), Positives = 189/361 (52%), Gaps = 8/361 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AG
Sbjct: 6 ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRVAGEPHAEIHALRMAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI
Sbjct: 66 ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 125
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + +L V KR +TLK A++ D S ITG ++ +V
Sbjct: 126 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARTRV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R DAILVGIGTVLADDP LT RL +P+R++LD + D+K++
Sbjct: 186 HEWRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 245
Query: 244 PVIIVTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+I V+E P L + + D+ L+ L +TS+ VEGGA+V S
Sbjct: 246 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 305
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
F+++ LVD + + + +++G P+ + E + G+D+ +
Sbjct: 306 FLSAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESPQTALRLTDTTVEQVGADILMTGYP 365
Query: 357 K 357
+
Sbjct: 366 Q 366
>gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 364
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 186/364 (51%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I S ITG ++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T +DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905]
gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905]
Length = 375
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 190/366 (51%), Gaps = 10/366 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A
Sbjct: 5 TMTNKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE A+ AT YVTLEPCSH+G++PPCA + E G+ RVVV + DP+ V+GRG+Q L
Sbjct: 65 MAGEHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRD 124
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + E + + ++ + KR + K A++ D I S +TG ++
Sbjct: 125 AGIAVEVGVLEQQARRLNERFIHNMLTKRPFVISKFAMTVDGKIATHTGHSKWVTGDAAR 184
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ + T
Sbjct: 185 EDVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRSPLDANVFNTE 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296
+++ + +F K + ++ + ++ ++L L G+T +L+EGG+
Sbjct: 245 EAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDEMLARLYEHGITDILLEGGS 304
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351
V SF+ +D ++Y + V+G +P + D G D+
Sbjct: 305 KVNASFLQQGAIDKYVIYVAPKVLGGNLSLTPFAGDNPSFMNEAWDIEFASFDKIGEDLR 364
Query: 352 LEYIGK 357
+ K
Sbjct: 365 IIAYPK 370
>gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH
391-98]
Length = 370
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 187/368 (50%), Gaps = 12/368 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VK+G ++G G G HAEV AL AG
Sbjct: 3 DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKNGKIVGMGAHLRAGEEHAEVHALRMAGAH 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ ++RVV+ D + V+G G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPLVAGNGKKKLEEAGIYV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E + + KR +TLK A+S D I S ITG +++ VH
Sbjct: 123 TTGILEEEARSLNRYFFHYMKTKRPFVTLKTAMSLDGKIATTTGESKWITGDAARDDVHH 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ T++AD+P LT R +P+RIILD H + L S ++ +
Sbjct: 183 YRHTHDAILVGVNTIIADNPSLTTR-LPNGGKNPIRIILDTHLRTPLLSHVVTDRVAPTW 241
Query: 246 IIVTENDDPVLALAFRKKN--INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV +N L + ++ + + +++ LL++L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLLSLLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ + G+D+ + +N
Sbjct: 302 EANGFNEIVTYISPKLIGGKDAPTWFGGTGFIQLQDALSLQFQEITQIGNDIKVIARKRN 361
Query: 359 L---CLQE 363
C QE
Sbjct: 362 EVPSCSQE 369
>gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 364
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 186/364 (51%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I S ITG +++
Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y+
Sbjct: 357 DYVV 360
>gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ruminococcus obeum A2-162]
Length = 375
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 180/374 (48%), Gaps = 19/374 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G +
Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+ GIGTVLADDP L R+ G + P+RI+ D ++ S+I+K+A
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSKLRIPPGSQIVKSAEKYRT 240
Query: 246 IIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ + + DLKKL+ L RG+ S+L+EGG +
Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
S + + +V + + + + G +P+E +E G D+ ++
Sbjct: 301 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360
Query: 354 ----YIGKNLCLQE 363
+ CLQE
Sbjct: 361 QVCDKKQEESCLQE 374
>gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803]
Length = 379
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 185/380 (48%), Gaps = 17/380 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ + G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE+A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRRLEEAGIEVTTGILEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TV+AD+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPSSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLV 292
+I L IIV ++ + ++ +NI I + + + +L +L + + SL V
Sbjct: 240 HVITDGLAPTWIIVGKDVNKEKIASYEFENIAIFQMKTKQIEVQDILDLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFG 347
EGG V SF+ + + I+ Y S +IG P+ + G
Sbjct: 300 EGGQTVHASFLQTNNFNEIVTYISPKLIGGKDAPTLFGGNGFATLQDALSLEIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQEL 364
D+ + +N CLQEL
Sbjct: 360 DDIKIVANARNEVTECLQEL 379
>gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
perforans 91-118]
gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
perforans 91-118]
Length = 369
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 119/359 (33%), Positives = 184/359 (51%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
RA++ AIL G GTV+ADDP +T R + P+R++LD + +
Sbjct: 189 GQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRT--LACRNIRQG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + +L + + DL +L +L RG+ + VE GA ++ +
Sbjct: 247 SAPTLYLHGENVAAPSLDDAQFLAVPLQAGRFDLPAVLALLAERGINEVHVEAGAMLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRYAP 365
>gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70]
Length = 376
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 179/371 (48%), Gaps = 15/371 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D +M AL + T+ NPSV C++VKDGI++GRG G HAEV AL
Sbjct: 2 MTFTAQDVVYMQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMAL 61
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE ARGATAYVTLEPCSH+GR+PPCAQ +I+ G+ +VV + DP+ +V+GRGL LS
Sbjct: 62 REAGENARGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLS 121
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI + +E +L+ R R ++ LK+A+S D MA S ITG ++
Sbjct: 122 DAGIESAVGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELA 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V RA++ AIL TVLADDP L R + + +
Sbjct: 182 RADVQAERAKASAILSTSATVLADDPLLNVR-WQQLPDKVKADYTQAQLRQPVRVILDSQ 240
Query: 240 ALLAPVIIVTENDDPVLALAFR---------KKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ P + PV ++ + L L+ L R + +L
Sbjct: 241 HRVQPSHRLFSLSSPVWLVSQTARSLLEFPAHCEQIQLSASTNALADLMAELGQRQINTL 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDYF 346
+E GA +A + I ++LVD +I+Y + ++G+ P L + +
Sbjct: 301 WIEAGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKL 360
Query: 347 GSDVCLEYIGK 357
G D+ Y +
Sbjct: 361 GDDLKTIYHPR 371
>gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
eligens ATCC 27750]
gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium
eligens ATCC 27750]
Length = 373
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 112/363 (30%), Positives = 179/363 (49%), Gaps = 11/363 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +M A+ ++ G + NP V +IVKD +IG G G HAE AL
Sbjct: 8 NFSKQDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDDRIIGEGWHRKYGELHAERDALS 67
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ GAT YVTLEPC H+G+ PPC + +++ GI RVV+ DP+ VSG+G+++L +
Sbjct: 68 RCMEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYLEE 127
Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + E + + K ++ +K A + D I S ITG ++
Sbjct: 128 HGIKVEGCVCNEECLAMNYVFFHYIRNKEPYVVMKTAQTLDGKIATYKGLSKWITGEQAR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIKT 239
VH R + AI+VG+GTV+AD+P L CR + H+P+RII D + LDS+I+K+
Sbjct: 188 ENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISNPHNPVRIICDSRLRTPLDSRIVKS 247
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
A P II T + D + +I + +L+ IL +G+ S+++EGG
Sbjct: 248 AGQIPTIIATCSTDSDRKSLYENAGCEVIITKESEQHVDLKELMNILGEKGIDSVILEGG 307
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
+ S + + +V+ + Y + + G + +E + G D+
Sbjct: 308 GTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVEGQGIANVDEAYRLRNKTVRLLGDDI 367
Query: 351 CLE 353
+E
Sbjct: 368 LIE 370
>gi|169797510|ref|YP_001715303.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter baumannii AYE]
gi|213155676|ref|YP_002317721.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB0057]
gi|215484945|ref|YP_002327186.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB307-0294]
gi|301346214|ref|ZP_07226955.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB056]
gi|301512963|ref|ZP_07238200.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB058]
gi|301595094|ref|ZP_07240102.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB059]
gi|332851510|ref|ZP_08433507.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6013150]
gi|332866790|ref|ZP_08437194.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6013113]
gi|169150437|emb|CAM88334.1| bifunctional protein [Includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) ] [Acinetobacter baumannii AYE]
gi|213054836|gb|ACJ39738.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB0057]
gi|213986529|gb|ACJ56828.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
AB307-0294]
gi|332729963|gb|EGJ61294.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6013150]
gi|332734398|gb|EGJ65518.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6013113]
Length = 361
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 114/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELT----CRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L ++ P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVVQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +L+E G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLIEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ L+D +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSSAFLQEGLIDEMISYVAPTLLGQRARAMFNADFEYMAQQLRFKLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 370
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 182/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R+ILD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I V ++ + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 302 QTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVAHAQS 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVTECLQEL 370
>gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3]
Length = 379
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLCAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI V
Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHSIRVILDTHLRTPPSSHVITDTLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ KNI I + ++ +L +L + + SL +EGG V SF+
Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG G P+ K + G D+ + +N
Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 367
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 172/365 (47%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 HDEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V GRGL L Q+GI
Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M + + +L R I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMQDAENINKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRAQS AIL TVLADDP +T R L + + + + L + + P
Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWEELNADTQA-LYPQENLRQPLRIIVDSQNRVTP 240
Query: 245 ----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
I +D + + + DL L+ +L + V S+ VE
Sbjct: 241 EHRIVQQPGETWIARTKEDTREWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + LVD ++Y + ++G LE+ G DV
Sbjct: 301 GPMLAGALLQAGLVDEFLVYVAPKLLGNDARGLFVLPGLEKLADAPQLSFSEIRPVGPDV 360
Query: 351 CLEYI 355
CL
Sbjct: 361 CLHLT 365
>gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, [Edwardsiella ictaluri
93-146]
gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella
ictaluri 93-146]
Length = 373
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 121/372 (32%), Positives = 177/372 (47%), Gaps = 18/372 (4%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M +S+ D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV
Sbjct: 1 MMMSAVHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVL 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL
Sbjct: 61 ALRMAGEQARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYR 120
Query: 119 LSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L Q GI V M +E + +L R ++ LK+ S D MA S IT
Sbjct: 121 LQQAGIAVQHGLMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSA 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ V RAQS AIL TVLADDP LT R + L E R+ H + L +
Sbjct: 181 AARADVQRYRAQSSAILSSSATVLADDPALTVRWDSLDE-DTQRLYPREHLRQPLRVIVD 239
Query: 238 KTALLAP----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ P ++ + D + + + DL L+ L +
Sbjct: 240 SHNRVTPQHGLVAQPGETLLARIDPDTQDWPPSVSQLAVPRHGEGLDLVLLMMQLGKMQL 299
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
S+ VE G +A + + + LVD +I+Y + +++G+ LE
Sbjct: 300 NSVWVEAGPRLAGALLQAGLVDELIVYLAPMLLGDAARGLCHLPGLERLGDAPALTFSDV 359
Query: 344 DYFGSDVCLEYI 355
G+D+ L
Sbjct: 360 TRVGNDLRLTLR 371
>gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
Length = 373
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 117/374 (31%), Positives = 184/374 (49%), Gaps = 18/374 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + D FM A+ + T+ NPSV C++VK G ++G+G G PHAEV A
Sbjct: 1 MSEFTEQDRAFMQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ EAG+ A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ +V+ ++DP+ V+G+GL+ L
Sbjct: 61 MREAGKNAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
Q GI + E L+ R ++ LK+A++ D + S ITG
Sbjct: 121 QQAGIETAVGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGES 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227
++ V RA++ AIL GTVLAD+P L R E P+R+I+D
Sbjct: 181 ARIDVQQERAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSK 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
++S + K + + D A + + + L+ L+ L R +
Sbjct: 241 QQISSQLNLFKIDSPVWLAGIQPRDLTD-FPANCEIICLMPEKEQSLLQALMIELGKRQI 299
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
S+ VE GA +A + I LVD ++LY + ++G+ L + +
Sbjct: 300 NSVWVEAGAKLAGALIEQNLVDELVLYIAPKLLGDEAKGLCHLPHLTKLADAPLWRLQSM 359
Query: 344 DYFGSDVCLEYIGK 357
+ G D+ + Y+ K
Sbjct: 360 EKVGDDIKMIYMRK 373
>gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
43325]
gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
43325]
Length = 377
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 122/371 (32%), Positives = 189/371 (50%), Gaps = 16/371 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ DA FM AL ++ T+ NPSV C++VKDG ++G+G G PHAEV A
Sbjct: 1 MSEFSAQDAVFMQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AGE+A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ RVV + DP+ +V+G+GLQ L
Sbjct: 61 LRDAGEQAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+++GI + E +L+ R + + LK+A+S D +A S IT +
Sbjct: 121 AEQGIESAVGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSEL 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ V + RA++ AIL TV+ADDP L R L + + + + + +
Sbjct: 181 SRQDVQVERAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQ-YKHENLRQPIRVILDS 239
Query: 239 TALLAPVIIVTENDDPVLAL---------AFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ P + + D PV + + I+ L L+ L R + +
Sbjct: 240 QNQVQPTQRLFQVDSPVWFVSKSERDLSGYPQSCEQIILEDKAEYLHNLMLELGKRQINT 299
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDY 345
L +E GA +A + I + LVD +I+Y + ++G+ P L + + +
Sbjct: 300 LWIEAGATLAGALIEANLVDELIIYTAPKLLGDEARGLCKLPHLNKLADASQWKLHSIER 359
Query: 346 FGSDVCLEYIG 356
G DV Y
Sbjct: 360 IGDDVKSIYHP 370
>gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
130Z]
gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
130Z]
Length = 375
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 118/376 (31%), Positives = 180/376 (47%), Gaps = 18/376 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + D +M AL +R T+ NP+V C++VK ++G G G PHAEV A
Sbjct: 1 MTAFTEQDQAYMQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AG+ +GATAYVTLEPCSHYGR+PPCAQ +I G+ +V++ DP+ +V+GRGL+ L
Sbjct: 61 IRDAGDNTQGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKML 120
Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI + +E ++ +L R + LK+A+S D MA S ITG
Sbjct: 121 QDAGIESAVGLLAEKAEAVNLGFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227
++ V RAQ+ AIL TVLADDP+L R L + P+R+ILD
Sbjct: 181 ARADVQEGRAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRR 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
++ ++ + ++ D AF + + L L+ L R +
Sbjct: 241 HRVQPHHRLFRIESPVWLVSEKPRDMS-AFPAFCEHIQLKTTENPTALYALMQELGKRQI 299
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRR 343
++ VE GA +A + I L D +I+Y + ++G P L +
Sbjct: 300 NTIWVEAGATLAGALIEQNLADELIIYMAPKLLGHQARGLCKLPHLTRLADAPQWTLQSA 359
Query: 344 DYFGSDVCLEYIGKNL 359
G D+ Y K++
Sbjct: 360 VKIGEDLKTVYTRKSV 375
>gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26]
Length = 379
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 187/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + KR +T+K A+S D S IT ++ VH
Sbjct: 132 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 311 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 370
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 371 EVMECLQEL 379
>gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1]
gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187]
gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1]
Length = 370
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 187/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + KR +T+K A+S D S IT ++ VH
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVMECLQEL 370
>gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
25976]
gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC
25976]
Length = 361
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 14/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+
Sbjct: 1 MTDLD--YMRRAIVLAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ ATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q
Sbjct: 59 CKEDLSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQA 118
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V+ +++ E + KR ++ +K A++ D I + S ITG ++
Sbjct: 119 GVEVVEGLLKDECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGESARA 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA
Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPN--VKQPVRIVCDSQLRTPLDCQLVQTAK 236
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I T +DD FR + DL+ LL L + SLL+EGG++
Sbjct: 237 EYRTVIATVSDDLQKIEQFRPPGVEVLVCKARNKRVDLQDLLQKLGDMQIDSLLLEGGSS 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + S +V+ + Y + ++G +P+ +++ + G D+ L
Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356
Query: 353 EYIG 356
+Y
Sbjct: 357 DYEV 360
>gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97]
Length = 370
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 187/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + KR +T+K A+S D S IT ++ VH
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVMECLQEL 370
>gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri]
Length = 372
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 107/367 (29%), Positives = 173/367 (47%), Gaps = 14/367 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL
Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L+
Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLN 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI +E++ + +LTR + + LK+A S D + S IT +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL 232
+ V RAQS AI TV+ D+ L R + + +R +
Sbjct: 181 RQDVQRYRAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQH 240
Query: 233 --DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
S + V+ ++ + + + + + + I V +
Sbjct: 241 ALTSDLKLFQASGEVVTISSQNTHPIVTSENHIQCCVDDDQLNLKEVVNKISRDFNVNHI 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A S I LVD +I+Y + ++G G LE +
Sbjct: 301 WVEAGATLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDIRMV 360
Query: 347 GSDVCLE 353
G D+ +
Sbjct: 361 GKDIRIT 367
>gi|166710620|ref|ZP_02241827.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 369
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 123/359 (34%), Positives = 182/359 (50%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L G
Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +M ++ + +L+R R + +K+ S D +A S ITG ++
Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL G GTVLADDP +T RL P+R++LD + +
Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLRT--LACKNIRNG 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + + AL ++ DL +L +L R + + VE GA ++ +
Sbjct: 247 DAPTLYLHGDAVAATALDGAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSGA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + LVD +++Y + +++G+ P +E G D+ L Y
Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLHYAP 365
>gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201]
Length = 379
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGTDVNQEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Sterne]
gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0488]
gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0442]
gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0193]
gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0465]
gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0389]
gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0174]
gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
Tsiankovskii-I]
gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
684]
gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0248]
gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
CNEVA-9066]
gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A1055]
gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Western North America USA6153]
gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Kruger B]
gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Vollum]
gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Australia 94]
gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames]
gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
Sterne]
gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0488]
gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0193]
gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0442]
gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0389]
gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0465]
gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0174]
gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis
Tsiankovskii-I]
gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W]
gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820]
gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC
684]
gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str.
A0248]
Length = 370
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ KNI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Serratia symbiotica str. Tucson]
gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Serratia symbiotica str. Tucson]
Length = 371
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 177/366 (48%), Gaps = 16/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A + +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+
Sbjct: 4 DVFYMARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEV 123
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ R ++ LK+AVS D MA S IT ++ V
Sbjct: 124 CHGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
LRAQS AIL TVLADDP LT R + L + + + + + P
Sbjct: 184 LRAQSAAILSTSATVLADDPALTVRWDELDA-ETQSLYPQENLRQPWRIILDSQNRVTPQ 242
Query: 245 ---------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ D ++ I + DL ++ L R V S+ VE G
Sbjct: 243 HRVVQQPGATWLARLQPDKQAWPQDVEQLIFPAHGGGVDLVVMMMHLAKRQVNSIWVEAG 302
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
A ++ + + + LVD ++LY + ++G+ G LE+ F+ G D+
Sbjct: 303 AQLSGALLQAVLVDELVLYLAPKLLGDDGRGLCHLPGLEQLADAPEFVFSEVRQVGPDLR 362
Query: 352 LEYIGK 357
L K
Sbjct: 363 LRLRAK 368
>gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293]
Length = 373
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 66 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 125
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S IT ++ VH
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 245 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 305 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 364
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 365 EVMECLQEL 373
>gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
Length = 370
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 183/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H K S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLKTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ KNI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168]
Length = 366
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 194/362 (53%), Gaps = 13/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL +R VG TS NP V ++V+D ++G G Y G PHAEV ALEEAG
Sbjct: 2 DKDIYYMEKALTLARKGVGYTSPNPMVGAVVVRDDKIVGEGHHRYYGGPHAEVYALEEAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A G+T YV LEPCSHYG++PPC IIE G++RVV+ + DP+ RVSG+G++ L + GI
Sbjct: 62 EKAFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGI 121
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + + ++ + + LK+A + D + + S +TG ++ V
Sbjct: 122 EVTVGVLEEKARNLNEVFIKNITNRMPFVYLKMAQTLDGYLATSSGDSRWVTGKKARQYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR + DAILVGIGTVL DDP LT RL+ + ++I+LD K+ L + I+ A
Sbjct: 182 HRLRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIKIVLDSKLKIPLTANILNQENDA 241
Query: 244 PVIIVTENDDPVLALAFRKKNINI-------IYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PVIIV + K+ ++ +K+LL L +G++SLLVEGG
Sbjct: 242 PVIIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIPIKELLINLNKKGISSLLVEGGG 301
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-----MCVRRDYFGSDVC 351
V +SF+ VD ++ + + ++G S + E + + G D+
Sbjct: 302 RVNYSFLKEGFVDKMLFFIAPKLLGGSDGVSVFDGKGAEVMAKVKKLKKYKIEEIGEDIL 361
Query: 352 LE 353
+
Sbjct: 362 IT 363
>gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 381
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 183/366 (50%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL +AG
Sbjct: 10 ALDVHYMARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQAG 69
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 70 ELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNAGI 129
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 130 GVQCGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARSAV 189
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD+ LT R + L + P+R+++D ++ LD
Sbjct: 190 QRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVPLD 249
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL+KL+ L RGV +LVE
Sbjct: 250 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELANRGVNEVLVE 309
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD ++ + +G P PL + V G+D
Sbjct: 310 AGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELQIVEMRAVGNDW 369
Query: 351 CLEYIG 356
+ +
Sbjct: 370 RVIALP 375
>gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
5159]
gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM
5159]
Length = 382
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 134/373 (35%), Positives = 194/373 (52%), Gaps = 16/373 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ +R G + NP+V +IV++G V+G G T G PHAE+ AL
Sbjct: 2 MQELDTDRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVAL 61
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ AGE ARGAT YVTLEPC+HYGR+PPC + I++ GIRRVV + DP V+GRG L
Sbjct: 62 QRAGERARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLR 121
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q G+ V +E+E ++A R E +TLK A++ D I S ITG +
Sbjct: 122 QAGVDVTVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEA 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----EHSPMRIILDPHFKLSLDS 234
+ H LR Q DAILVG+ TVL DDPELT RL+ HSP+R+++D + +
Sbjct: 182 RRYAHQLRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSA 241
Query: 235 KIIKTALLAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+++ + L A +++T P L A + + C DL L +L RG+
Sbjct: 242 RLLDSRLPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINR 301
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRD 344
+LVEGG V S L D+++ + + +++G P PL + VR
Sbjct: 302 VLVEGGGRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVR 361
Query: 345 YFGSDVCLEYIGK 357
G D+ +E +
Sbjct: 362 QVGDDLVIEGRLR 374
>gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801]
Length = 360
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 112/361 (31%), Positives = 184/361 (50%), Gaps = 8/361 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL
Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L
Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120
Query: 121 QKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V +E + A++ R + + LK A++ D I S ITG S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RA DA++VG T+ D+P LT +P+R+++ L ++ + +T
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVA--GVNPLRVVMSKTLDLPSEANLWQT 238
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + ++I + L R + + +I ++ +L RG++S+L E G +A
Sbjct: 239 DIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
I ++ I+ + + +IG P P+ + LEK V D+ +E
Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIEG 358
Query: 355 I 355
Sbjct: 359 Y 359
>gi|77919046|ref|YP_356861.1| riboflavin biosynthesis protein RibD [Pelobacter carbinolicus DSM
2380]
gi|77545129|gb|ABA88691.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pelobacter carbinolicus DSM 2380]
Length = 371
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 128/357 (35%), Positives = 184/357 (51%), Gaps = 11/357 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM A+ +R G T NP+V LIVKDG ++GRG G PHAE+ AL EAG+ A
Sbjct: 6 ENFMRQAIDLARRGEGRTRPNPAVGALIVKDGEIVGRGFHPKAGQPHAEIYALREAGDRA 65
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGA YVTLEPCSH+GR+ PCA IIE G+ RV V DP+ +V+G G++ L GI V
Sbjct: 66 RGADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVH 125
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E+ + + + + + + LK A++ D A S +T S+++VH L
Sbjct: 126 CGVLENLCRRIIAPFAKHILTAKPFVVLKSAMTLDGKTATASGHSQWVTSAASRHEVHKL 185
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPV 245
R + D I+VGIGTVL DDP+LT RL P RI+LD ++ D+ I + A +
Sbjct: 186 RDRMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVLDSSLRIPEDAAILNLQSSAATL 245
Query: 246 IIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I T A R DL L+T L RG+ S+L+EGGA + +
Sbjct: 246 IATTARASKAKIEAIRAAGAEVLVLPESGGRVDLHALMTALGARGLQSILLEGGAELNGA 305
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
F + LVD ++++ + ++G G + + VR +FG D +E
Sbjct: 306 FWRAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMTEATVLEDVRVTHFGDDTLIE 362
>gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 379
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ KNI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Edwardsiella tarda FL6-60]
Length = 373
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 176/372 (47%), Gaps = 18/372 (4%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M +S+ D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV
Sbjct: 1 MMMSAAHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVH 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL
Sbjct: 61 ALRMAGELARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYR 120
Query: 119 LSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L Q GI V + +E + +L R ++ LK+ S D MA S IT
Sbjct: 121 LQQAGISVRHGVMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSA 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ V RAQS AIL TVLADDP LT R L E + R+ H + L +
Sbjct: 181 AARADVQRYRAQSSAILSSSATVLADDPALTVRWASLDE-ATQRLYPQEHLRQPLRVIVD 239
Query: 238 KTALLAP----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ P ++ + D + + + + DL L+ L +
Sbjct: 240 SHNRVTPQHRLITQPGETLLARVDPDTQAWPSSVSQLAVPRHGEGLDLVLLMMQLGKMQL 299
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
S+ VE G +A + + + LVD +I+Y + ++G+ L+
Sbjct: 300 NSVWVEAGPRLAGALLQAGLVDELIVYLAPTLLGDAARGLCHLPGLDRLGDAPALTFSDV 359
Query: 344 DYFGSDVCLEYI 355
G+D+ L
Sbjct: 360 TRVGNDLRLTLR 371
>gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
gi|149751955|gb|EDM61886.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814]
Length = 378
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 117/377 (31%), Positives = 180/377 (47%), Gaps = 22/377 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKCGELHAERNAIASLTES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GAT YVTLEPC HYG++PPC + IIE I++VV+ DP+ +V+G+G Q L + G +
Sbjct: 63 AEGATIYVTLEPCCHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGITV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 123 VQDFMREECDCLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEPARQEVQH 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R + I+ GIGTVLADDP L R+ G + P+RI+ D ++ LDS+I+++A
Sbjct: 183 MRHRYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSSLRIPLDSQIVRSAKEYRT 240
Query: 246 IIVTE---------NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
I+ L DLKKL+T L G+ S+L+EGG
Sbjct: 241 IVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQIDLKKLMTYLGNEGIDSILLEGGG 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ S + + +V + + + + G +P++ + C G D+
Sbjct: 301 TLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQGIGIGLPSEALKLKCTDICRIGEDIR 360
Query: 352 L-----EYIGKNLCLQE 363
+ E + CLQE
Sbjct: 361 IICQVCEKEQEGPCLQE 377
>gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2]
Length = 369
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 188/367 (51%), Gaps = 12/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D FM A++ +R +G TS NP+V +IVK+G V+ G G PHAEV+A +
Sbjct: 1 MEKNDTHFMKLAVKEARKGLGRTSPNPAVGAVIVKEGRVVASGFHKQAGMPHAEVEAFRK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G A GAT YVTLEPC+H+G++PPC + I++ G++RVVV + DP+ V+G G +L +K
Sbjct: 61 VGNRAPGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKK 120
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + + I L+ + R + K A++ D + S IT S++
Sbjct: 121 GLEVVTGILEDECIRLNEAFTKFITTGRPFVIAKSAITLDGWTATSAHHSQWITNEKSRH 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LR + DA+L+GIGTVLADDP +T RL + P RI++D +F+ +K++K
Sbjct: 181 FVHRLRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTRIVVDTNFRTPAGAKVMKHDS 240
Query: 242 LAPVIIV------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
AP II D + + D DL L+ L +TS+LVEGG
Sbjct: 241 TAPTIIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDLNWLMDKLGEMSITSILVEGG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLE----EGYLEKNFMCVRRDYFGSDV 350
+ + + I ++L+D ++ + ++G G GIP FG DV
Sbjct: 301 SMILGAMIRAQLIDKFYVFIAPKILGGGDGIPMAAGAGPKTMDDSLGLKDTSVRRFGDDV 360
Query: 351 CLEYIGK 357
+ K
Sbjct: 361 LICGYPK 367
>gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42]
Length = 379
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ KNI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802]
Length = 360
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 112/361 (31%), Positives = 183/361 (50%), Gaps = 8/361 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL
Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L
Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120
Query: 121 QKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V +E + A++ R + + LK A++ D I S ITG S
Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RA DA++VG T+ D+P LT +P+R+++ L ++ + +T
Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVA--GVNPLRVVMSKTLDLPSEANLWQT 238
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ ++I + L R + + +I ++ +L RG++S+L E G +A
Sbjct: 239 DIAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
I ++ I+ + + +IG P P+ + LEK V D+ +E
Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIEG 358
Query: 355 I 355
Sbjct: 359 Y 359
>gi|193076093|gb|ABO10696.2| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
Length = 361
Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ DD +L R + P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +LVE G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLVEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ LVD +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSTAFLQEGLVDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342]
Length = 379
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTVVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEDARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGKDVNPEKIASYESENITIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVANARS 370
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 371 EVTECLQEL 379
>gi|299135084|ref|ZP_07028275.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
gi|298590061|gb|EFI50265.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2]
Length = 377
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 150/365 (41%), Positives = 206/365 (56%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE AL+
Sbjct: 9 FTPEDHRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPVALQR 68
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+GAT YVTLEPCSH+G+SPPCA II GI RV+ ++DP+ V+G+G L
Sbjct: 69 AGKAAKGATLYVTLEPCSHHGKSPPCADAIIAAGIARVMSAIEDPNPEVAGQGHARLRDA 128
Query: 123 GIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + + HA R E+R H+TLK+AVS D I AG V ITG +
Sbjct: 129 GIQVDVGLYRDEAARAHAGHFLRVREQRPHVTLKLAVSADGRIAAAGHKPVQITGEAANA 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VHLLRAQ+DAIL+GIGT +ADDP LTCRL G++ SP+R++LD +LS +S++I +A
Sbjct: 189 RVHLLRAQNDAILIGIGTAMADDPMLTCRLPGMEACSPVRVVLDRALRLSGNSRLIHSAR 248
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEG 294
P+ ++ A ++ D +L L +G+T LLVEG
Sbjct: 249 ATPLWLIASETAEAAAATKLGAAGAHVFHLAVDDHQVGLDLEAVLHTLSAQGITRLLVEG 308
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVC 351
GA VA SF+ + LVD L++ IG G+ + E + ++ + FG D
Sbjct: 309 GAKVASSFLKAGLVDEFWLFQGMKNIGSDGLAALDGQQLETAIASGWLADETERFGDDRL 368
Query: 352 LEYIG 356
Y
Sbjct: 369 TVYRR 373
>gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165]
Length = 363
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 178/360 (49%), Gaps = 12/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ FM+ A+ + G T+ NP V C+IVKDG +I G G HAE A+ E+
Sbjct: 3 HSIFMARAIELAELGRGWTNPNPLVGCVIVKDGKIIAEGYHQRYGEWHAERNAILHCQED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GATAYVTLEPC H+G +PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI V
Sbjct: 63 LSGATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + KR ++ +K A++ D I A + ITG ++ V
Sbjct: 123 IENVMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQC 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R Q AI+VG+ TVLAD+P L R+ P+RI+ D + L+ ++++TA
Sbjct: 183 TRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSRLRTPLECQLVQTAKTYRT 240
Query: 246 IIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
II T +DD F+ + DL LL L +G+ SLL+EGG+++ S
Sbjct: 241 IIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+N+ +V+ + Y + ++G +P+ + + G D+ ++Y
Sbjct: 301 ALNAGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDYEV 360
>gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88]
gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88]
Length = 380
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 180/361 (49%), Gaps = 9/361 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ + D +M A+ + G + NP V +IVKDG +IG G G HAE++A +
Sbjct: 17 EMMNLDEIYMKRAIELAHLGEGYVNPNPLVGAVIVKDGRIIGEGYHKKFGEAHAEIEAFK 76
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ +G T YV LEPCSHYG++PPC II+ GI++V++ + DP+ V+GRGL+ L +
Sbjct: 77 SCKEDPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKK 136
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V E E + ++ K+ LK A + D I + S ITG S+
Sbjct: 137 ANIEVRVGTLEDECRNLNEIFIKYITYKKPFCILKWASTLDGKICSSIGDSRWITGEDSR 196
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-- 238
VHL+R + +I+VG+ T+L D+P LT RL + +P RII+D + LD++I K
Sbjct: 197 EYVHLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRIIVDSKGRTPLDARIFKEE 256
Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+A + + K I DL+ L+ L + S+L+EGG
Sbjct: 257 GDTFIATTSQIEDKKIKEFEKVGAKIIIIPEKGRKVDLQYLVNYLTKLNIDSILLEGGGT 316
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
+ +S + +VD ++++ + ++G +P+E ++ + F D+ +
Sbjct: 317 LNYSALKEGIVDKVLMFLAPKILGGENSKTPIEGEGIKYIKDCIELKDLSIKNFKEDILI 376
Query: 353 E 353
E
Sbjct: 377 E 377
>gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
PCC 7420]
gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes
PCC 7420]
Length = 380
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 187/359 (52%), Gaps = 8/359 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD M + +R +G TS NP V +IV+DG ++G G G PHAE+ AL +A
Sbjct: 23 TPFDRTMMQRCIELARRALGRTSPNPLVGAVIVRDGAMVGEGFHPGAGQPHAEIFALRQA 82
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G++++GAT YV LEPC+HYGR+PPC + +I G+ +VVV + DP+ V+G G++ L + G
Sbjct: 83 GDKSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKAG 142
Query: 124 IIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +E+E + A++ R + KR LK A++ D I A S +TG ++
Sbjct: 143 IEVVVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLDGKIATASGHSAWVTGQEARRY 202
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR DA++VG TV D+P LT + H+P+R+++ L +D+++ +TA
Sbjct: 203 VHQLRTACDAVIVGGNTVRLDNPHLTS--HDTDTHNPLRVVMSRTLDLPIDARLWETADA 260
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+++ +P L K + +I K + L R ++++L E G +A
Sbjct: 261 PTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYDRQLSTVLWECGGTLAARA 320
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
I V ++ + + ++G PSP+ + L + V GSD +E
Sbjct: 321 IADGTVQKVLAFIAPKIVGGITAPSPVGDLGLARMTDALTLEQVSWRQLGSDYVVEGYV 379
>gi|325124197|gb|ADY83720.1| bifunctional protein ribD [Acinetobacter calcoaceticus PHEA-2]
Length = 361
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 178/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGIPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R++LD +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +LVE G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKMLLQTLSKQHQIYDVLVEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ LVD +I Y + ++G+ E + F + D+ L
Sbjct: 293 ATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|114771641|ref|ZP_01449045.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
HTCC2255]
gi|114547713|gb|EAU50603.1| riboflavin biosynthesis protein RibD [alpha proteobacterium
HTCC2255]
Length = 365
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 135/363 (37%), Positives = 191/363 (52%), Gaps = 7/363 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D R+M AL G T NP V C+IVK+ +VIGRG T GG PHAE AL
Sbjct: 1 MINKNTDERWMRLALSLGARGAGRTWPNPFVGCVIVKNSLVIGRGYTQQGGRPHAETVAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++A +A +T YVTLEPC+H G++PPC +I+ GI+RVV+ DPD RVSG+G+Q L
Sbjct: 61 QQASNDAENSTVYVTLEPCAHTGKTPPCVNNLIKAGIKRVVIAAIDPDHRVSGKGIQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + E HA +KR ++LKIA S D I S +TG S
Sbjct: 121 NAGIEVSVGILKEEAEKAHAGFFSILNKKRPFLSLKIATSIDGRIATQTGNSKWLTGAES 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRA DA+LVG GTV AD+P L R G + P+RI++D + K+ S +I +
Sbjct: 181 RQFVHYLRATHDAVLVGRGTVEADNPSLNVRGFGRAVNQPVRIVMDSNLKIDTKSNLINS 240
Query: 240 ALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A P+ I E++ L+ DL+ + L G+T +L EGG
Sbjct: 241 AKEIPLWICHAKESEFSKLSKTGAMSIACKHKNGGIDLQDAMENLAKNGLTRILCEGGGK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+A S +N LVD +I+ ++ +VIG+ G + ++ NF + G+DV
Sbjct: 301 LAASLLNENLVDELIVMQAGLVIGKEGTAAVSGLGIDALVDAPNFDMLETKRIGNDVLSI 360
Query: 354 YIG 356
+
Sbjct: 361 WSR 363
>gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046]
Length = 371
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 188/365 (51%), Gaps = 11/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL + G T+ NP V +IVKDG+++G G+ G PHAEV A+ AG
Sbjct: 2 KTDQDYMQLALELAASARGNTNPNPLVGAVIVKDGVIVGTGLHRKAGEPHAEVHAVNMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E + AT YVTLEPCSHYG++PPCA+ + E G +RVVV +DP+ V+GRG++ L GI
Sbjct: 62 EHTKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGI 121
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E ++ + +R + K A++ D I S ITG ++ V
Sbjct: 122 EVEVGVLQEEAQKLNERFIHNMLTERPFVVAKFAMTLDGKIATYNGHSQWITGEEARADV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR + D ILVG+ TVL D+P+LT R + Q +P+R++LD K +D+ I T
Sbjct: 182 HELRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIRVVLDSTLKTPVDAHIADTTDA 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
+I+ + + D A + + II D ++ +L L +G+T LLVEGG V
Sbjct: 242 RTIIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIEDMLKALYKKGITHLLVEGGGNV 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLE 353
SF+ +D I+Y + V+G +P +E L + G D+ +
Sbjct: 302 NASFLRGGFIDQYIVYIAPKVLGGKNSITPFTGTDVETIDLANQLEFGEVTHVGEDLRII 361
Query: 354 YIGKN 358
K
Sbjct: 362 AYPKK 366
>gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987]
Length = 370
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVYALHMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ I + KR +T+K A+S D S ITG S+ VH
Sbjct: 123 TTGVLEAEAILLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEESRADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I V D ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARS 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVTECLQEL 370
>gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
Length = 361
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 124/360 (34%), Positives = 186/360 (51%), Gaps = 7/360 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D FM AL + T NP V +IVKDG ++G G G PHAE++AL+EAG
Sbjct: 2 ETDEYFMQRALELAEKGRKTTGENPMVGAVIVKDGKIVGEGYHKKAGGPHAEIEALKEAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A+GAT YV LEPC HYG++PPC + +I+ I RVV ++DP+ +V+G+G L GI
Sbjct: 62 LNAKGATIYVNLEPCCHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + L+ + + +++ + KIA S D I ++ S IT ++ +
Sbjct: 122 EVSVGVLKNKASKLNEVFIKNISEQTPFVIAKIAQSVDGKIALSSGKSKWITCDAARKKG 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R+ DAILVGIGTVLADDP L CR +P++I+LD + ++SK+++
Sbjct: 182 HEIRSMYDAILVGIGTVLADDPILDCR-LANNAANPVKIVLDSSAVIPIESKLLQGKGKV 240
Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + D L +I + + +L +LL L G+ S+LVEGGA V SF
Sbjct: 241 ILATTAQADKGRLQKLEEMGADIIMTSQNKVNLNELLKALYNSGIYSILVEGGAKVFTSF 300
Query: 303 INSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ L+D +I++ S +IG G L E +F + G D+ L K
Sbjct: 301 LIEGLLDKLIVFLSPKIIGGDGKDYVENLFLREMKDVYDFYIDDAEKVGEDIMLTMYSKK 360
>gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
Eklund]
gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str.
Eklund]
Length = 372
Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats.
Identities = 129/369 (34%), Positives = 187/369 (50%), Gaps = 14/369 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A+ S+ G T NP V +IVKD +IG+G G HAEV AL+ A E+
Sbjct: 4 KFMKKAIELSKLGAGYTYPNPLVGAVIVKDNKIIGQGYHERFGGLHAEVNALKNATEDVT 63
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI V
Sbjct: 64 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVTV 123
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E E K ++ K+ LK A++ D I S I+ IS+ VH +R
Sbjct: 124 GIFEEEIKKINEIFIKYITTKKPFCILKTAMTLDGKIATVTGDSKWISNEISRQYVHKIR 183
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ I+VGIGTVL DDP LT RL RII+D ++ L+SK++ II
Sbjct: 184 HRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 243
Query: 248 -----VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + + I I DL+ L+ L + S+L+EGG + +S
Sbjct: 244 ATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMNELGKINIDSILLEGGGTLNYSA 303
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
+N +VD +I + S +IG +P+ ++ F + F DV +E YI
Sbjct: 304 LNEGIVDKVISFISPKIIGGQDAKTPVAGEGIKNISDAVTFHNIEISRFEEDVVIEGYIK 363
Query: 357 K--NLCLQE 363
K +C QE
Sbjct: 364 KENKVCSQE 372
>gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241]
Length = 370
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 187/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ K + G D+ + ++
Sbjct: 302 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARS 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVTECLQEL 370
>gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142]
Length = 364
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 182/364 (50%), Gaps = 9/364 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D + M L +R +G TS NP V +IVK+G +IG G G PHAEV AL
Sbjct: 2 MTPDNVDQQMMQRCLTLARRGLGYTSPNPLVGAVIVKEGKIIGEGFHLKAGEPHAEVFAL 61
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L
Sbjct: 62 REAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQ 121
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V +E + L+ ++ + LK A++ D I + S +TG S
Sbjct: 122 EAGIEVTVGVEEAACLRLNEAFCHRILHNQPFGILKYAMTLDGKISSSTGHSAWVTGTKS 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RA DA++VG TV D+P L ++ +P+R+++ + L D+ +
Sbjct: 182 RQLVHEMRAGCDAVIVGGNTVRRDNPHL--TIHQATGRNPLRVVMSRNLHLPQDANLWNV 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ ++ +P L R+K + +I +++ +L R ++S+L E G +A
Sbjct: 240 EIAPTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCERQLSSILWECGGVLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE- 353
I + I+ + + +IG SP+ LEK V D+ +E
Sbjct: 300 AEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEKMSDALSLQNVSLRQVDRDILVEG 359
Query: 354 YIGK 357
Y+ K
Sbjct: 360 YLNK 363
>gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
Length = 368
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 174/367 (47%), Gaps = 16/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C+IV+DG+++G G G PHAEV AL AG++
Sbjct: 3 DEIWMARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAYVTLEPCSH+GR+PPC +I G+ RV+ + DP+ V+GRGL L Q GI V
Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244
LRAQS AIL TVLAD+P LT R L + + + + I + P
Sbjct: 183 LRAQSSAILSTSATVLADNPSLTVRWQDLAADTQA-AYAEADLRQPVRVVIDSQNQVTPE 241
Query: 245 ---------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + D + ++ + + D DL L+ +L R + ++ VE G
Sbjct: 242 HRLISQSGETWLARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTVWVEAG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
A +A + + + +VD +I+Y + ++G+ + F G D+
Sbjct: 302 AKLAGALLTAGVVDELIVYMAPKLLGDNARGLCHLPGIAHLADAPAFTFSDSRQVGPDIR 361
Query: 352 LEYIGKN 358
L +
Sbjct: 362 LTLTPDS 368
>gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
5_1_63FAA]
Length = 366
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 13/366 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+
Sbjct: 3 EEYMRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDP 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+GA YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI +
Sbjct: 63 KGAEIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETE 122
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E E + + + LK A++ D I A S ITG ++ VH L
Sbjct: 123 TGILEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTL 182
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R Q AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA P I
Sbjct: 183 RHQYAAIMAGIGTVLADDPMLNARI--EHGNDPIRVICDSNLRISEGSNIVKTAREIPTI 240
Query: 247 IVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T + D +K I ++K++L L + S+LVEGG + S
Sbjct: 241 IATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESL 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
I + V + Y + + G +P+E +E+ F ++ G+D+ LE +
Sbjct: 301 IKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLEGKVR 360
Query: 358 NLCLQE 363
+ CL E
Sbjct: 361 S-CLPE 365
>gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24]
Length = 379
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKN--INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +N I I ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIKIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 371 EVTECLQEL 379
>gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
Length = 360
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 118/345 (34%), Positives = 180/345 (52%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+
Sbjct: 2 EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+T +VTLEPCSHYG++PPC + II+ GI++V + ++DP+ +VSG G++ L + GI V
Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
MME E + + K + LK A+S D I S IT S+ H +
Sbjct: 122 VGMMEKEARKLNEIFFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ L+S +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKN--PVRIIVDSRGRIPLNSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD 344
+VD ++ + S +IG +P+E +E + +
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSSIENSIELKDVE 344
>gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC
35185]
Length = 367
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 189/365 (51%), Gaps = 10/365 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL + G T+ NP V +IV++G ++G G G PHAEV AL AG+
Sbjct: 3 QDEDFMREALLLAANARGRTAPNPLVGAVIVREGRIVGAGWHRKAGTPHAEVHALAMAGD 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GAT YVTLEPCSH+GR+ PCA+ +++ G++RVV + DP+ V+G+G L G+
Sbjct: 63 LAHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGVE 122
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + AYL EK +TLK A++ D I A S ITG ++ +VH
Sbjct: 123 VTVGVLAEEARRLNEAYLKWVTEKLPFVTLKTAMTLDGKIATAAGKSQWITGEAARRRVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R +DAI+VGIGTVLADDP LT RL +P+R+I+D + L + +++
Sbjct: 183 EMRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVRVIVDSRARTPLAATVVQDGAAKT 242
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKK---LLTILVGRGVTSLLVEGGAAVAHS 301
++ VT A + ++ + L+ +L R +TS+ VEGG + S
Sbjct: 243 LVAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATLMRLLAARDMTSVFVEGGGTLNFS 302
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YI 355
+ + LVD I + + ++G +P+E + + + G+D+ L Y+
Sbjct: 303 LLAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELADAAVLTRLTAEQVGADILLTGYV 362
Query: 356 GKNLC 360
K
Sbjct: 363 AKEAR 367
>gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 379
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 186/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI V
Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ +P ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + ++
Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 371 EVTECLQEL 379
>gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617]
Length = 367
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ +
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEY 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I + + D + I +Y + DL LL +L + + S+ VE
Sbjct: 243 RLIAQPGE--TWLARSSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA A + + + +VD +I+Y + ++G+ G LE F G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360
Query: 351 CLEYIG 356
L
Sbjct: 361 RLTLTP 366
>gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
biosynthesis protein RibD [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
biosynthesis protein RibD [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 377
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 127/374 (33%), Positives = 183/374 (48%), Gaps = 21/374 (5%)
Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
M S+ DA +M+ AL +R T NP V C+IV+DG ++G G G PHAE
Sbjct: 1 MTASAQQAILDAHYMARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL
Sbjct: 61 VHALRAAGEQARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGL 120
Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
Q L+Q GI + + E E + +L R + + +K+A+S D M S IT
Sbjct: 121 QRLAQAGIATESGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILD 225
G +++ V LRAQ+ +L G TVLAD+ LT R + + P+R+++D
Sbjct: 181 GPAARSAVQRLRAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVD 240
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
++ LD+ P ++ T + I DL +LL L GR
Sbjct: 241 GRLRVPLDAAF---FKAGPALVATCMAVEEQYANGPECMIVAGDDGQVDLHRLLVELAGR 297
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVR 342
GV +LVE G +A +F LVD ++ + +G P PL +
Sbjct: 298 GVNEVLVEAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITE 357
Query: 343 RDYFGSDVCLEYIG 356
G D + +
Sbjct: 358 IRAVGDDWRVIAVP 371
>gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
protein RibD) [Aliivibrio salmonicida LFI1238]
gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
protein RibD) [Aliivibrio salmonicida LFI1238]
Length = 373
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 113/369 (30%), Positives = 173/369 (46%), Gaps = 17/369 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D M A++ ++ + T+ NP+V C++VK+G+++G G G PHAEV AL
Sbjct: 1 MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRGL L
Sbjct: 61 RQASENAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLE 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI +E+E + ++LTR + + LK+A S D + S IT +
Sbjct: 121 AAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228
+ V RAQ+ IL TV+ D+ L R + L P+R+ILD
Sbjct: 181 RQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH 240
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+L+ + + T + + P+ + I V
Sbjct: 241 QLTSELALFNTTGNVVTVS-HQPSHPLSHPESHLYCDLDNNKQLVLSDVIQKIAQEHNVN 299
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
L VE GA +A S I LVD +I+Y + ++G G LE N
Sbjct: 300 HLWVEAGATLAASMICEGLVDELIIYLAPKLMGADGRSIVNLIGLEAMSEAINLDISDIR 359
Query: 345 YFGSDVCLE 353
G D+ +
Sbjct: 360 MVGKDIRIT 368
>gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44]
Length = 379
Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ + G TS NP V ++VKDG ++G G G HAEV A+ AG++
Sbjct: 12 DQEYMNIALQLAESTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHAIHMAGDK 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI V
Sbjct: 72 AYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPLVSGSGARRLQEAGISV 131
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ Y ++ + +T+K A+S D I + S ITG +++ VH
Sbjct: 132 TTGVLEEEATTLNRYFFHYMKTKLPFVTIKTAMSLDGKIATSTGESKWITGEDARDDVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+RIILD H + L S II +
Sbjct: 192 YRHTHDAILVGVNTVIADNPSLTTR-LPNGGKHPIRIILDTHLRTPLSSHIITDGIAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ D + + I + ++++ L++L + + SL VEGG +V SF+
Sbjct: 251 IIVGKDVDKGKITTYESQGISVFQMKTKQIEIREFLSLLGEKQILSLFVEGGQSVHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 EAKCFNEIVTYISPKLIGGKDAPTMFGGTGFNKLQHAISLQIQEMKQIGDDIKIVATVRN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVPACLQEL 379
>gi|239502078|ref|ZP_04661388.1| pyrimidine deaminase [Acinetobacter baumannii AB900]
Length = 361
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 REAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +L+E G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLIEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ L+D +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|59711307|ref|YP_204083.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Vibrio fischeri ES114]
gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Vibrio fischeri ES114]
Length = 372
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 112/367 (30%), Positives = 176/367 (47%), Gaps = 14/367 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D M A+ ++ + T+ NP+V C++VK+G +IG G G PHAEV AL
Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L
Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLD 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI +E++ + +LTR + + LK+A S D + S IT +
Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFK--L 230
+ V RAQS AIL TV+ DD L R + + +R +
Sbjct: 181 RQDVQRYRAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQH 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
SL S + V+ ++ + + + + + + I V +
Sbjct: 241 SLTSDLKLFQASDEVVTISSQNTHPIGTSENHMQCRVDDGQLDLKEVVNKISRDFNVNHI 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A S IN LVD +I+Y + ++G G LE +
Sbjct: 301 WVEAGATLAASMINDNLVDELIIYLAPKLMGADGRSIINLIGLETMSEAIDLDIKDIRMV 360
Query: 347 GSDVCLE 353
G D+ +
Sbjct: 361 GKDIRIT 367
>gi|293390135|ref|ZP_06634469.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290950669|gb|EFE00788.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 374
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 178/371 (47%), Gaps = 17/371 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL E
Sbjct: 5 FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPC H+GR+PPCA+ + E G+ +V+ + DP+ +V+G+GLQ L+
Sbjct: 65 AGENARGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADA 124
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R + + LK+A+S D MA S ITG ++
Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL TVLADDP L R L + R + + + + T
Sbjct: 185 DVQQYRAKASAILSTSQTVLADDPSLNVRWAELPNETQAR-YAQENLRQPVRVILDSTHK 243
Query: 242 LAPVIIVTENDDPVL-----------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ V D PV A + L+ L+T L R + +L
Sbjct: 244 VRSDFKVFLTDAPVWLAGEDDFQLTGFPASTEYLKLDRSHGESRLQALMTELGKRQINTL 303
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A + I LVD +I+Y + ++G+ L + +
Sbjct: 304 WVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCEPT 363
Query: 347 GSDVCLEYIGK 357
G D+ L YI K
Sbjct: 364 GDDLKLIYIRK 374
>gi|328472537|gb|EGF43400.1| riboflavin-specific deaminase [Vibrio parahaemolyticus 10329]
Length = 374
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 110/367 (29%), Positives = 173/367 (47%), Gaps = 10/367 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+
Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVHAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L +
Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RAQS IL TV+ D+ L R S + + +
Sbjct: 189 QDVQCYRAQSGGILSTSKTVMDDNASLNVR-WDDLPQSVQAHYELTEVRQPARVILDRQQ 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298
L+ + + + + ++ + + L + + L VE GA +
Sbjct: 248 KLSDDLKLFSTEGERIIVSSEGDVCPQLDQSGKIDLAATLKAVATQHNINHLWVEAGATL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL-- 352
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 308 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVRMVGRDIRITA 367
Query: 353 EYIGKNL 359
+ K +
Sbjct: 368 TLVRKEI 374
>gi|184156566|ref|YP_001844905.1| pyrimidine deaminase [Acinetobacter baumannii ACICU]
gi|332874950|ref|ZP_08442801.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6014059]
gi|183208160|gb|ACC55558.1| Pyrimidine deaminase [Acinetobacter baumannii ACICU]
gi|322506453|gb|ADX01907.1| ribD [Acinetobacter baumannii 1656-2]
gi|323516332|gb|ADX90713.1| pyrimidine deaminase [Acinetobacter baumannii TCDC-AB0715]
gi|332736893|gb|EGJ67869.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii
6014059]
Length = 361
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +L+E G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLIEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ L+D +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L]
Length = 370
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ +NI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + II Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
gi|145847785|gb|EDK24703.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756]
Length = 395
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 179/374 (47%), Gaps = 19/374 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G +
Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+ GIGTVLADDP L R+ G + P+RI+ D ++ S+I+K+A
Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSKLRIPPGSQIVKSAEKYRT 260
Query: 246 IIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ + + DLKKL+ L RG+ S+L+EGG +
Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
S + +V + + + + G +P+E +E G D+ ++
Sbjct: 321 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380
Query: 354 ----YIGKNLCLQE 363
+ CLQE
Sbjct: 381 QVCDKKQEESCLQE 394
>gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
AMB-1]
gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum
AMB-1]
Length = 375
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 142/363 (39%), Positives = 200/363 (55%), Gaps = 11/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D M AAL +R +G NP+V C+IVKDG V+GRG T GG PHAE +AL AG
Sbjct: 12 EIDLGHMRAALALARRGLGTVWPNPAVGCVIVKDGRVVGRGWTQPGGRPHAETEALAMAG 71
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A GAT YVTLEPC+H+G++ PCA ++ G+ RVVV V DPD RV+G+G+ L GI
Sbjct: 72 SAALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGI 131
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + L+A R R +TLK+A + D I S ITG +++
Sbjct: 132 PVTEGVLHAEAAELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGDQARSAA 191
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRA++DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA
Sbjct: 192 HLLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVATANDV 251
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAA 297
P ++T D V + + DL+ L L GVT +LVEGGA
Sbjct: 252 PTWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLELALQALGESGVTRVLVEGGAH 311
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
++ + + + LVD ++ +R+ ++G G+P+ ++ +F V G DV
Sbjct: 312 LSAALLRAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRPVGDDVMET 371
Query: 354 YIG 356
YI
Sbjct: 372 YIR 374
>gi|299771887|ref|YP_003733913.1| pyrimidine deaminase [Acinetobacter sp. DR1]
gi|298701975|gb|ADI92540.1| pyrimidine deaminase [Acinetobacter sp. DR1]
Length = 361
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + L+ ++ LK+A S D MA S ITG ++
Sbjct: 121 NAGIEVEVGICENLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R G + P R++LD +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLGHIDIETVAQPKRVVLDRQGRLPLNAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +LVE G
Sbjct: 241 ILENPETVLVMGPYRQELADL--------GVIQLEIQPLKILLQTLSKQHQIYDVLVEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ LVD +I Y + +G+ E + F + D+ L
Sbjct: 293 ATLSTAFLQEGLVDELISYIAPTFLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora ATCC BAA-2158]
Length = 367
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 178/366 (48%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+
Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
M L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + L P+R+I+D +++
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I + +D + Y D DL +L +L + + SL VE
Sbjct: 243 RLISQPGETWLARTAGDDLD--WPDNVSQLTVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA A + + + +VD +I+Y + ++G+ G LE F G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360
Query: 351 CLEYIG 356
L
Sbjct: 361 RLTLTP 366
>gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17]
Length = 370
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALRMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI V
Sbjct: 63 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ Y ++ + +T+K A+S D I S ITG +++ VH
Sbjct: 123 TTSVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAIL+G+ TV+AD+P LT R P+RIILD H + L S +I +
Sbjct: 183 YRHTHDAILIGVNTVIADNPSLTTR-LPNGGKHPIRIILDTHLRTPLSSHVITDEMAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + + + ++ + +++ LL +L + + SL VEGG +V SF+
Sbjct: 242 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 302 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVPACLQEL 370
>gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
3_1_46FAA]
gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium
3_1_46FAA]
Length = 375
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 179/374 (47%), Gaps = 19/374 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G +
Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+ GIGTVLADDP L R+ G + P+RI+ D ++ S+I+K+A
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSKLRIPPGSQIVKSAEKYRT 240
Query: 246 IIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ + + DLKKL+ L RG+ S+L+EGG +
Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353
S + +V + + + + G +P+E +E G D+ ++
Sbjct: 301 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360
Query: 354 ----YIGKNLCLQE 363
+ CLQE
Sbjct: 361 QVCDKKQEESCLQE 374
>gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 386
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 186/361 (51%), Gaps = 7/361 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD + M L +R +G TS NP V +IV++GI+IG G G PHAEV AL +A
Sbjct: 26 TEFDRKMMQRCLTLARQALGRTSPNPLVGSVIVQEGIIIGEGFHPGAGQPHAEVLALRQA 85
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ARGAT YV LEPC+HYGR+PPC++ I+ GI++VVV + DP+ V+G+G+Q L+ G
Sbjct: 86 AEKARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAG 145
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I + ESE + ++ R K+ LK A++ D I S IT S+
Sbjct: 146 IETLVGVEESECRQVNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 205
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR+ DAI+VG TV D+P L +GL H+P+R+++ L + + T+
Sbjct: 206 VHQLRSACDAIIVGGSTVRQDNPHL--TTHGLCNHNPLRVVMTRSLDLPPSAHLWDTSQF 263
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ + + L K + +I ++ L RG +L E G ++ +
Sbjct: 264 PTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAA 323
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
I +V II + + +IG P+ + + F + + +V + Y+ ++ ++
Sbjct: 324 IAEGMVQKIIAFIAPKIIGGINAPTAVGDLG----FQLMSQALQLENVTVNYLNPDILIE 379
Query: 363 E 363
Sbjct: 380 G 380
>gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens
MI-1]
gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfotomaculum reducens MI-1]
Length = 376
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 185/362 (51%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M+ AL + G TS NP V ++VKDG V+G+G A G HAEV AL +AG
Sbjct: 2 DQDRHYMNMALELAAKARGRTSPNPMVGAVLVKDGEVVGKGFHAKAGGAHAEVVALADAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A+GAT YVTLEPC H+G++ PC + + + G++RVV + DP+ V+G+GL L GI
Sbjct: 62 DRAKGATVYVTLEPCCHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAGI 121
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E E K ++ K I LK A S D I A S ITG ++N
Sbjct: 122 EVVSGLLEEEAKELNEVFIKYITTKIPFIVLKAATSLDGKIATASGESKWITGDTARNYG 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR DAILVG+ TVLADDP LT RL + P+RII+D + +KI+ A
Sbjct: 182 HRLRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPLRIIVDSMSRTPTSAKILTQESAA 241
Query: 244 PVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
II T PV A + DLKKL+ +L + ++S+L+EGG +
Sbjct: 242 HTIIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDLKKLMVLLGEKQISSVLIEGGGKI 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+ S +N+ +VD + + + +IG P P+ + V G+D+ +
Sbjct: 302 SGSALNAGIVDKVAWFIAPKIIGGDLAPGPVRGEGIQFLKDATKLYKVTVQNLGADILIT 361
Query: 354 YI 355
Sbjct: 362 GY 363
>gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 374
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 123/371 (33%), Positives = 180/371 (48%), Gaps = 17/371 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL E
Sbjct: 5 FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ L+
Sbjct: 65 AGENARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADA 124
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R + + LK+A+S D MA S ITG ++
Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ A+L TVLADDP L R L + R + + + + + T
Sbjct: 185 DVQQYRAKASAMLSTSQTVLADDPSLNVRWAELPNETQAR-YVQENLRQPVRVILDSTHK 243
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY-----------CDCRDLKKLLTILVGRGVTSL 290
+ V D PV + L+ L+T L R + +L
Sbjct: 244 VRSDFKVFLTDAPVWLAGEDDFQLTGFPTSTEYLKLDRSHGESRLQALMTELGKRQINTL 303
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A + I LVD +I+Y + ++G+ L + +
Sbjct: 304 WVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPHLTRLADAPLWQLQSCEPT 363
Query: 347 GSDVCLEYIGK 357
G D+ L YI K
Sbjct: 364 GDDLKLIYIRK 374
>gi|295399034|ref|ZP_06809016.1| riboflavin biosynthesis protein RibD [Geobacillus
thermoglucosidasius C56-YS93]
gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
gi|294978500|gb|EFG54096.1| riboflavin biosynthesis protein RibD [Geobacillus
thermoglucosidasius C56-YS93]
gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1]
Length = 361
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 188/359 (52%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M A+ ++ +G TS NP V ++V G ++G G G PHAEV A+ AGE+
Sbjct: 4 DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNSGEIVGFGAHLKAGEPHAEVHAIRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSHYG++PPCA +I+ G+RRVV+ DP+ V+G+G++ L GI V
Sbjct: 64 AKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGIDV 123
Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ + K +TLK A S D I A S IT ++ VH
Sbjct: 124 KLGVLKEEADELNRVFFHYIATKTPFVTLKYASSLDGKIATATGESKWITSEAAREDVHR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA DAILVG+ TV+AD+P LT R +P+RI+LD H + L++ I++
Sbjct: 184 YRAVHDAILVGVDTVIADNPSLTVR-LPGSGKNPIRIVLDTHLRTPLEANILQDGQAETW 242
Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+I + + + + + ++ +LL +L R +TSL VEGG+ V SF+
Sbjct: 243 LIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHVLGERRITSLFVEGGSRVHDSFV 302
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
+ V+ I+ Y + +IG P+P+ R + G D+ + I K
Sbjct: 303 RAGAVNEIVAYFAPKLIGGKQAPTPIGGIGFASMADVMQLQIRRVETIGPDIKIVAIPK 361
>gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Erwinia amylovora CFBP1430]
gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946]
gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Erwinia amylovora ATCC 49946]
gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora CFBP1430]
Length = 367
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 179/366 (48%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+
Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + L P+R+I+D +++
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I + +D + + Y D DL +L +L + + SL VE
Sbjct: 243 RLISQPGETWLARTAGDDLD--WPDNVSQLMVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA A + + + +VD +I+Y + ++G+ G LE F G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360
Query: 351 CLEYIG 356
L
Sbjct: 361 RLTLTP 366
>gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus WK1]
gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus
flavithermus WK1]
Length = 358
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 129/355 (36%), Positives = 187/355 (52%), Gaps = 9/355 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL+ ++ G TS NP V ++VK G ++G G G PHAEV AL AGE
Sbjct: 1 MDEQYMRFALQLAQSARGQTSPNPLVGAVVVKHGEIVGFGAHLKAGEPHAEVHALRMAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A GAT YVTLEPCSHYGR+PPCA +IE ++RVVV DP+ V+G+G++ L + GI
Sbjct: 61 KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + K ++TLK A+S D I S IT ++ VH
Sbjct: 121 VTVGVLKEEADALNEMFFHYISTKTPYVTLKYAMSLDGKIATKTGESKWITSEDARRDVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R DAI+VG+GT+LADDP LT R G + P+RI+LD H + L + ++
Sbjct: 181 RERRMHDAIVVGVGTILADDPSLTVR-FGYEGKQPIRIVLDTHLRTPLHANVVTDQKAPT 239
Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I+V ++ ++ + +I + + D+ LL L R V S+ VEGGA V SF
Sbjct: 240 WIVVGQHVTEEQIKPYEHAGVHIIRMNENKIDIPFLLHELGKRNVMSIFVEGGAHVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
++SR V +I Y + ++IG PS + + GSD+ +
Sbjct: 300 LHSRSVQQVIAYIAPMLIGGNEAPSAIGGEGFGRMMDALRLQVKHVERIGSDIKI 354
>gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Megamonas hypermegale ART12/1]
Length = 360
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 110/359 (30%), Positives = 185/359 (51%), Gaps = 13/359 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + +G TS NP V +IVKD V+G G G PHAEV AL +AGE A+GA
Sbjct: 1 MRLAMQLAGNAIGRTSPNPLVGAVIVKDNRVVGCGWHREAGTPHAEVHALNQAGELAQGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC+HYG++PPC++ ++E ++ V + D + +V+G+G + L GI V+
Sbjct: 61 DVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAGIHVEYGF 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + + K+ I LK A++ D I A S IT S+ + LR
Sbjct: 121 LQDELRKQNEVFFKWIEHKKPFIVLKAAMTLDGKIATATGQSKWITNETSRAYGYKLRDI 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
D I+VGI TV+ D+P LT R++G +P+RI++D K+ +++ + + ++ T
Sbjct: 181 YDGIMVGINTVIEDNPMLTARVDG--GKNPIRIVVDSSLKIDINANVAQDKSAKTIVATT 238
Query: 250 ENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ D L ++ D D++KLL IL + + S+LVEGGA ++ SF+
Sbjct: 239 DKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILGQQNICSILVEGGATLSGSFVA 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
+LVD + + + ++G +P+ + + ++ + D+ +
Sbjct: 299 KKLVDKVYFFIAPKIVGGKEAKTPVAGTGILNLQEALSLKDIQIEKLEEDILIIGRVDK 357
>gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989]
Length = 389
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 115/374 (30%), Positives = 182/374 (48%), Gaps = 19/374 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 17 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTES 76
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE I++VV+ DP+ +V+G+G+Q L + G +
Sbjct: 77 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRKAGVTV 136
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S IT S+ +V
Sbjct: 137 VEDFMGEECDRLNPVFFHYITMKTPYVVMKYAMTLDGKIATKTGASKWITSLASRKEVQH 196
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+VGIGTVL DDP L R+ G + P+RI+ D ++ LDS+I+K+A
Sbjct: 197 MRHQYMGIMVGIGTVLEDDPMLNVRVEGWKS--PVRIVCDSKLRIQLDSQIVKSAKKYRT 254
Query: 246 IIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ + +L + + DLK+L+ L RG+ S+L+EGG +
Sbjct: 255 IVAYADQKNTGEKIKILHTRGVETIYCPDEKNQIDLKRLMIDLGNRGIDSILLEGGGTLN 314
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE- 353
S + + +V + + + + G +P+E + G D+ +
Sbjct: 315 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGVGVKFPSEAVELKYTDICQIGQDIRIRC 374
Query: 354 ----YIGKNLCLQE 363
+ CLQE
Sbjct: 375 QVCEKKQEESCLQE 388
>gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT]
Length = 377
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 14/369 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A+ S+ VG T NP V +IVKD +IG+G G HAEV AL+ A E+
Sbjct: 9 KFMKKAIELSKLGVGYTYPNPLVGAVIVKDNKIIGQGYHERFGGAHAEVNALKNATEDVT 68
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI V
Sbjct: 69 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E E K ++ K LK A++ D I S I+ +S+ VH +R
Sbjct: 129 GVFEEEIKKINEIFIKYITTKEPFCILKTAMTLDGKIATVMGDSKWISNELSREYVHEIR 188
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ I+VGIGTVL DDP LT RL RII+D ++ L+SK++ II
Sbjct: 189 HRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 248
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLLVEGGAAVAHSF 302
T L + KK + K+ + + S+L+EGG + +S
Sbjct: 249 ATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVIELGKMNIDSILLEGGGTLNYSA 308
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
+N +VD +I + + +IG + + ++K + F DV +E Y+
Sbjct: 309 LNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDAVTLHDIEISNFQEDVVIEGYVK 368
Query: 357 K--NLCLQE 363
K +C QE
Sbjct: 369 KENKVCSQE 377
>gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
C3-41]
gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus
C3-41]
Length = 375
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 186/366 (50%), Gaps = 10/366 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A
Sbjct: 5 TMTTKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE A+ AT YVTLEPCSH+G++PPCA + + G+ RVVV + DP+ V+GRG+Q L
Sbjct: 65 MAGEHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRD 124
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + E + + ++ + KR I K A++ D I S +TG ++
Sbjct: 125 AGITVEVGVLEQQARRLNERFIHNMLTKRPFIISKFAMTVDGKIATHTGHSKWVTGKAAR 184
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ ++ T
Sbjct: 185 EDVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRTPLDANVLNTE 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+++ + + K ++ ++L L G+T +L+EGG+
Sbjct: 245 EAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDEMLARLYEHGITDILLEGGS 304
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351
V SF+ +D ++Y + V+G +P D G D+C
Sbjct: 305 KVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLMNEAWQVEFASFDKIGEDLC 364
Query: 352 LEYIGK 357
+ K
Sbjct: 365 IIAYPK 370
>gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus
anthracis str. A2012]
Length = 370
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R +P+R+ILD H + S +I +L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGQNPIRVILDTHLRTPPSSHVITDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV + + ++ KNI I + ++ +L +L + + SL VEGG V SF+
Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSXLQDALSXEIQEMKQIGDDIKIVAHARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
MBIC11017]
gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina
MBIC11017]
Length = 387
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 106/366 (28%), Positives = 183/366 (50%), Gaps = 10/366 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ + M L+ ++ G T+ NP V C+I +DG ++G G G PHAEV AL
Sbjct: 18 NIDPHHQQMMQRCLQLAQKAAGFTTPNPLVGCVIERDGEIVGEGYHPKAGEPHAEVFALR 77
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A+GATAYV+LEPC+H+GR+PPC++ +++ G+ VVV + DPD RVSG+G++ L
Sbjct: 78 AAGDKAKGATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRA 137
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E ++ ++ +R LK A++ D I S IT +++
Sbjct: 138 AGIQVITGVEEADCQRVNEAFVHRILYQRPFGILKYAMTLDGKIATTAGHSAWITKEVAR 197
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN---GLQEHSPMRIILDPHFKLSLDSKII 237
VH LRA DA++VG TV D+P LT ++P+R++L L + +
Sbjct: 198 AHVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVVLSRTLDLPPTAHLW 257
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+T + +++ + + ++ + ++ D ++ L + + S+L E G
Sbjct: 258 ETDIAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLGKKELLSVLWECGGT 317
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
++ I V ++ + + ++G PSP+ + K VR G D +
Sbjct: 318 LSARAIADGSVQKVLAFIAPKIVGGQNAPSPVGDLGFNKMTEALQLERVRWHIVGEDCLV 377
Query: 353 E-YIGK 357
E Y+ K
Sbjct: 378 EGYLPK 383
>gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 373
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 172/364 (47%), Gaps = 14/364 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T+ NP+V C+IV + ++G G G PHAEV AL AG++
Sbjct: 8 DEFYMARAFELARRGRFTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMAGDK 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 68 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDV 127
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ R + LK+A S D MA S IT S+ V
Sbjct: 128 SHGLMMNEAEAVNRGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQR 187
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL---DPHFKLSLDSKIIKTA-- 240
RAQS AIL TVLADDP LT R + L + ++ +DS+ T
Sbjct: 188 YRAQSSAILSSSATVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEH 247
Query: 241 ----LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + D + K+ Y DL L+ L + S+ VE GA
Sbjct: 248 KLISQAGETLLARIHPDDLHWPENVKQLAIPQYGQGIDLVVLMMQLGKLQINSVWVEAGA 307
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
++A + + + LVD +I+Y + ++G+ LE+ F+ G D+ +
Sbjct: 308 SLAGALLQAGLVDELIIYLAPKLLGDAARGLCVLPGLEQLADAPQFVFSEVMPVGPDLRI 367
Query: 353 EYIG 356
Sbjct: 368 VLRN 371
>gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon
786 str. D14]
Length = 373
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V D +M+ AL + G T TNP V ++VKDG ++G G G PHAEV AL
Sbjct: 1 MKVID-DEYYMALALDMAERAQGQTGTNPVVGAVVVKDGALVGLGTHLKRGTPHAEVHAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG +A G+T YVTLEPCSH+G +PPCA+ +I ++RVVV +DP+ V+G+G++ L
Sbjct: 60 NMAGSQAEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLR 119
Query: 121 QKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + E ++ ++T+K A + D + S I+ +
Sbjct: 120 AAGIEVEVGVLRERALKLNRRFIKFITTGMPYVTIKSASTLDGKLASRTGDSKWISNEGA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +R + AI+VG T+LADDP+LT R + SP+RII D ++ +++++
Sbjct: 180 REIVHTMRHRHQAIMVGASTILADDPQLTTR-LSVPGLSPIRIIADSTLRIPETAQVLRD 238
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGA 296
I+ TE DP A ++ C L L RG++S+LVEGG
Sbjct: 239 GQAPTWIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNALVQLGQRGISSVLVEGGG 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVC 351
+ S + +LVD I+L+ + +IG PS + + + G +VC
Sbjct: 299 RLNGSLLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAGYDLMRDAVTLRDMEVEQIGDNVC 358
Query: 352 LEYIG 356
+ +
Sbjct: 359 IRGVP 363
>gi|262373927|ref|ZP_06067204.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
gi|262310938|gb|EEY92025.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205]
Length = 366
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 180/365 (49%), Gaps = 20/365 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AGE A
Sbjct: 13 QYWMQQAIDLARRGQYSTKPNPNVGCVIVKDGKIIGEGFHPKAGQPHAEVFALRQAGENA 72
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+ ATAYVTLEPC+H+GR+PPCA+ +++ +++VVV DP+ V+G+G++ L GI V+
Sbjct: 73 KDATAYVTLEPCAHFGRTPPCAEALVKAQVKKVVVACSDPNPLVAGKGVKILQDAGIEVE 132
Query: 128 RMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E L+ ++ LKIA S D MA S ITG ++ V
Sbjct: 133 TGICDEEAKTLNFGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTAARQDVQHW 192
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKIIKTALL 242
RA S A++ GI TVLADD EL R + P RIILD +L L +KI++
Sbjct: 193 RAISAAVITGIQTVLADDCELNVRSLDGVDLSSVVQPKRIILDRQGQLPLSAKILQNPET 252
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V+ + L I + L T+ + +LVE GA ++ +F
Sbjct: 253 VMVMTPFRQELADL--------GVIQLAPQPLNQLLQTLTQQYQIYDVLVEAGATLSTAF 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ LVD +I Y + ++G+ P + + F V G D+ L +
Sbjct: 305 LEQGLVDEMISYVAPTLLGQSARPMFNAKFSKMAEQLRFELVDVTQLGQDIRLRLLP--- 361
Query: 360 CLQEL 364
+QE+
Sbjct: 362 -IQEM 365
>gi|260556402|ref|ZP_05828621.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
19606]
gi|260410457|gb|EEX03756.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC
19606]
Length = 361
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/364 (31%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R+ILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +L+E G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKTLLQTLSKQYQIYDVLIEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ L+D +I Y + ++G+ + + F + D+ L
Sbjct: 293 ATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA]
Length = 359
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 182/359 (50%), Gaps = 11/359 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
++M A+ ++ G T+ NP V +IVKDG VIG G G HAE AL+ ++
Sbjct: 3 EQYMRRAIELAKKGTGYTNPNPLVGAVIVKDGEVIGEGFHEAYGGLHAERNALKSCTKDP 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GA YVTLEPC HYGR+PPC + +I+ GIR+V V DP+ +V+G G++ L + GI +
Sbjct: 63 NGAELYVTLEPCCHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEAE 122
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + E + + ++ LK A++ D I + S ITG ++ V L
Sbjct: 123 TGILDEECRGLNDIFFYYITHDTPYVVLKYAMTLDGKIAVRTGESKWITGGEAREHVQFL 182
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AIL GI TV++DDP L R+ G ++P+R+I D ++ + SKI+++A + P I
Sbjct: 183 RHRYAAILTGIHTVISDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTI 240
Query: 247 IVTENDDPVLALAF---RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I + + I DL +L+ IL + S+LVEGGA + S I
Sbjct: 241 IAACERNEKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSVI 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
+ V+ + + + + G SP+E ++K FG D+ LEY +
Sbjct: 301 QAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEYKVR 359
>gi|330830923|ref|YP_004393875.1| pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
gi|328806059|gb|AEB51258.1| Pyrimidine deaminase/reductase RibD [Aeromonas veronii B565]
Length = 369
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 177/365 (48%), Gaps = 15/365 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D ++MS AL +R T+ NP V ++VKDG+V+G G G PHAEV AL
Sbjct: 2 FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ +V GRGL+ LS+
Sbjct: 62 AGDNARGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI D + + L+ +++ +T+K+ S D MA S IT ++
Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARR 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA+ DA+L TVLAD LT R + L + + L +
Sbjct: 182 DVQRLRARHDAVLSSAETVLADGASLTVRWDELPPSVKV-SYPKETLRQPLRVIVDSQNR 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK---------KLLTILVGRGVTSLLV 292
L P + + +N+ PVL + + +L L +L + V S+LV
Sbjct: 241 LTPELPLFQNESPVLLARHKASGEWPEWVQQLELPLLDGKLDLVSLFMLLAKQNVNSVLV 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G + + + LVD ++LY++ ++G+ G L + G
Sbjct: 301 EAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLAIKDVRMVGQ 360
Query: 349 DVCLE 353
D+ +
Sbjct: 361 DIRIT 365
>gi|46201728|ref|ZP_00208227.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
[Magnetospirillum magnetotacticum MS-1]
Length = 358
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 138/357 (38%), Positives = 194/357 (54%), Gaps = 11/357 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AAL +R +G NP+V C+IV+DG V+GRG T GG PHAE +AL AG A GA
Sbjct: 1 MRAALALARRGLGTVWPNPAVGCVIVRDGRVVGRGWTQPGGRPHAETEALAMAGRAANGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC+H+G++ PCA +I G+ RVVV V DPD RV+G+G+ L GI V +
Sbjct: 61 TVYVTLEPCAHHGKTAPCADALIAAGVSRVVVAVQDPDSRVAGKGIDRLRVAGIPVTEGV 120
Query: 131 ESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+A R R +TLK+A + D I S ITG ++ HLLRA+
Sbjct: 121 LHAEASELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGEQARAAAHLLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA P ++T
Sbjct: 181 TDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVSTANEVPTWLLT 240
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLK------KLLTILVGRGVTSLLVEGGAAVAHSFI 303
D + + L L GVT +LVEGGA ++ + +
Sbjct: 241 LEDCDSDRREAYEDAGVDVVEVSPGPDGAVDLELALQALGESGVTRVLVEGGAHLSAALL 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD ++ +R+ ++G G+P+ ++ +F V G DV YI
Sbjct: 301 RAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRALGDDVMETYIR 357
>gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 381
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 178/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL +AG
Sbjct: 10 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQAG 69
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++E G+ RVV + DP+ VSGRGL L GI
Sbjct: 70 ELARGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNAGI 129
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E+E + +L R R +I +K+A+S D MA S ITG +++ V
Sbjct: 130 GVQCGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARSAV 189
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVL D LT R P+R+++D ++ LD
Sbjct: 190 QRLRAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVPLD 249
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL+KL+ L RGV +LVE
Sbjct: 250 APFFQAGNALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRKLMGELGARGVNEVLVE 309
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD ++ + +G P PL + V G+D
Sbjct: 310 AGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDW 369
Query: 351 CLEYIG 356
+ +
Sbjct: 370 RVIALP 375
>gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3]
Length = 379
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 186/380 (48%), Gaps = 17/380 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ + G TS NP V ++VK+G ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKEGNIVGIGAHLRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE+A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGTG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRRLEEAGIEVATGVLETEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TV+AD+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLV 292
+I L IIV ++ + ++ +NI I + +K LL L + + SL V
Sbjct: 240 HVITDGLAPTWIIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLLFFLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFG 347
EGG V SF+ ++ ++ I+ Y S +IG P+ + G
Sbjct: 300 EGGQTVHASFLQTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALHDALSLEIQEMKQVG 359
Query: 348 SDVCLEYIGKN---LCLQEL 364
D+ + ++ CLQEL
Sbjct: 360 DDIKIVANARSEVTECLQEL 379
>gi|307265418|ref|ZP_07546974.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919532|gb|EFN49750.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 360
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 120/345 (34%), Positives = 184/345 (53%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+
Sbjct: 2 EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V
Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
MME + + ++ K + LK A+S D I S IT S+ H +
Sbjct: 122 VGMMEKDARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ LDS +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVINDNPMLTTRLEGYKN--PVRIIVDSRGRIPLDSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD 344
+ R+VD ++ + S +IG +P+E +E + +
Sbjct: 300 LKERIVDKVMFFISPRIIGGKNALTPVEGIGFSNIENSIELKDVE 344
>gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
audaxviator MP104C]
gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis
audaxviator MP104C]
Length = 372
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 126/361 (34%), Positives = 185/361 (51%), Gaps = 11/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M AL + G TS NP V ++V+DG ++GRG A G PHAE+ AL +AGE
Sbjct: 1 MDQEYMRMALDLAVRARGRTSPNPLVGAVVVRDGEIVGRGYHARAGLPHAEIVALAQAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARG+T YV+LEPC H+GR+ PC + +I G+RRVV + DP+ +V+GRG+ L + G+
Sbjct: 61 AARGSTLYVSLEPCCHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGVE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E ++ R + LK+AVS D I S ITG ++ H
Sbjct: 121 VTEDVLRDEAARLNEIFIKYITTGRPFVALKVAVSLDGKIATRTGDSRWITGGPAREYAH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR DA+LVG GTV+ DDP LT R P+RI+LD ++ S+++ AP
Sbjct: 181 RLRDTYDALLVGRGTVVKDDPSLTTR-LPGGGRDPVRIVLDSLARIPESSRVLSGESTAP 239
Query: 245 VIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
VI+ P + + + DL+ LL L R +TS++VEGGA V
Sbjct: 240 VIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVLLRELAAREITSVMVEGGATVHA 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
SF+ +R VD + + + ++G P + + VRR G+D+C+E
Sbjct: 300 SFLEARFVDKLHWFVAPKIVGGVEAPGAVAGRGVGRISEAVGLERVRRIELGNDLCIEGY 359
Query: 356 G 356
Sbjct: 360 P 360
>gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus lactis subsp. lactis KF147]
gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactococcus lactis subsp. lactis KF147]
Length = 362
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 184/359 (51%), Gaps = 12/359 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++
Sbjct: 2 KKDEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGEAHAEINAFKDCN 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E GAT YVTLEPC+H G+ PPC + II+ I+RVV+ DP+ VSG+G++ + + GI
Sbjct: 62 ESPEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGI 121
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + + + ++ +K A++ D I + S ITG I++ +V
Sbjct: 122 EVSINVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R++ AI++G+ T++ DDP+L+ R +P+RII D H + L SKI+ TA
Sbjct: 182 HQDRSRFMAIMIGVETLILDDPQLSVR--LENGKNPIRIICDTHLRSPLASKIVSTASEI 239
Query: 244 PVIIVTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
II T DP F + + +LK+L L +G+ S+++EGG +
Sbjct: 240 STIIATAESDPEKQAPFLKVGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLN 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + ++ + Y + + G PSP+E +E + Y G D+ LE
Sbjct: 300 ASALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPNQAYLLEGAQITYLGEDILLE 358
>gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
Length = 366
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 128/354 (36%), Positives = 190/354 (53%), Gaps = 9/354 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI V
Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDV 123
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E + K +T+K A S D I A S IT ++ VH
Sbjct: 124 EVGILKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ DAILVG+ TV+AD+P+LT R G Q +P+R+ILD + LD+ ++
Sbjct: 184 LRAQHDAILVGVNTVMADNPKLTVR-IGQQRKNPLRVILDTNLHTPLDAHVVVDKEAETW 242
Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
II + + I + D++++L +L + +TSL VEGG+ + SF+
Sbjct: 243 IITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 302
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
S +V+ ++ Y + +IG P+P+ + + G D+ +
Sbjct: 303 RSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 356
>gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
alkenivorans AK-01]
gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum
alkenivorans AK-01]
Length = 372
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 178/367 (48%), Gaps = 10/367 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D ++M AL + G TS NP V +IVKDG VIG+G G PHAE+ ALEE
Sbjct: 1 MKKQDTQYMRQALALAEKGTGNTSPNPMVGAVIVKDGKVIGQGWHKKAGGPHAEIFALEE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +A+GAT YVTLEPC+H+G++PPC+ +++ GI +V+ + DP+ + G
Sbjct: 61 AGADAKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPKAQGGLKYLQENG 120
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ E+E + ++ R + K A + D I S ITG S+
Sbjct: 121 VETQWGVCEAEARKQNEFFIKHVTTGRPFVVCKCAATLDGRIATRIGDSKWITGEESRAY 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH +R DAILVGI TV DDP LT RL Q + P+R+ILD + +K+++
Sbjct: 181 VHKMRHAMDAILVGINTVRMDDPSLTARLEDGQGNDPLRVILDSRLSMDPSAKMLRQDSD 240
Query: 243 APVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ +I P L A + +L + L RG+ SLL+EGG
Sbjct: 241 SGTLIFCGPQAPEVKRDALEKAGAEIVEAPEMSGFLNLDFICRNLGERGLNSLLIEGGGH 300
Query: 298 VAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352
V S + S +VD + L+ + ++ G+ G+P G + FG+D +
Sbjct: 301 VHSSALKSGVVDKVCLFYAPKILCGDDGVPMFAGPGPDFMADSIELKDITLHRFGNDFMV 360
Query: 353 EYIGKNL 359
E +L
Sbjct: 361 EGYVMDL 367
>gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SK82]
gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SH164]
gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SK82]
gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SH164]
Length = 362
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 171/360 (47%), Gaps = 16/360 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AG
Sbjct: 6 DQDYFYMRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A+ ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G+ L Q GI
Sbjct: 66 EQAQDATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGI 125
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + L+ ++ LK+A S D MA S ITG ++ V
Sbjct: 126 EVESGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
RA S ++ GI TVL DD +L R + P R++LD +L L ++I+ +
Sbjct: 186 QHWRAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILAS 245
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + L I L T+ + +LVE GA ++
Sbjct: 246 PEQLMVMGPFRQELADL--------GVIQLPLQPLKGLLQTLCNQYQIFDVLVEAGATLS 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ +LVD +I Y + +G+ + F G D+ L I
Sbjct: 298 SAFLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRLRLIP 357
>gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudomonas fluorescens Pf0-1]
gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
fluorescens Pf0-1]
Length = 376
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 176/365 (48%), Gaps = 17/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA FM+ AL +R T NP V C+IV+DG ++G G G PHAEV AL AGE
Sbjct: 9 LDAHFMARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALRAAGE 68
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPCSH+GR+PPCA ++ GI RVV + DP+ +V+GRGLQ L+ GI
Sbjct: 69 RARGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIA 128
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ + E+E + +L R + +K+A+S D M S ITG +++ V
Sbjct: 129 TESGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 188
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRAQ+ +L G TVLAD LT R L P+R+++D ++ LD+
Sbjct: 189 RLRAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDA 248
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
P ++ T + I DL +LL L RGV +LVE
Sbjct: 249 PF---FKAGPALVATCVAIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVLVEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
G +A +F LVD +++ + +G P PL G D
Sbjct: 306 GPRLAGAFAQFGLVDEFVIFIAGKFLGSTARPLLDWPLACMKDAPELKITEIRAVGDDWR 365
Query: 352 LEYIG 356
+ I
Sbjct: 366 VTAIP 370
>gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal) and 5-amino-6-(5-phosphoribosylamino)
uracil reductase (C-terminal) [Candidatus Regiella
insecticola LSR1]
gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal) and 5-amino-6-(5-phosphoribosylamino)
uracil reductase (C-terminal) [Candidatus Regiella
insecticola LSR1]
Length = 381
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 118/373 (31%), Positives = 177/373 (47%), Gaps = 21/373 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M+ AL + T+ NP+V C+IV++G ++G G G PHAE+ AL +A
Sbjct: 8 HDKKYMARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKA 67
Query: 66 E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ AR AT YVTLEPC H GR+PPC +I GI+RVVV + DP+ +VSGRG+ L Q G
Sbjct: 68 KDEARNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAG 127
Query: 124 IIVDRMMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I+VD + + K +L R + ++ LK+A S D MA S IT +
Sbjct: 128 IVVDYIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEA 187
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHF 228
+ V RAQSDAIL T+LAD+P LT R P RII+D
Sbjct: 188 RQDVQNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCN 247
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
++ ++I + +T + + DL+ + L R +
Sbjct: 248 RVMPCHRVITEPGACLLARMTADQQIWPDNIEQLFLPPSEEEKRIDLRLFMMELSRRQIN 307
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRD 344
S+ VE GA +A + + +VD +ILY + ++G+ +++ NF
Sbjct: 308 SIWVEAGATLAGALLQIGVVDELILYLAPKLLGDNARGLCVLPGIDKLNQAHNFTLQEVC 367
Query: 345 YFGSDVCLEYIGK 357
GSD+ L
Sbjct: 368 QIGSDLRLRLTPN 380
>gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
Length = 360
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 119/345 (34%), Positives = 180/345 (52%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E
Sbjct: 2 EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V
Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
MME E + ++ K + LK A+S D I S IT S+ H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ LDS +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKN--PVRIIVDSRGRIPLDSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD 344
+ +VD ++ + S +IG +P+E + +
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIELKDVE 344
>gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
Length = 360
Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 115/345 (33%), Positives = 179/345 (51%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+
Sbjct: 2 EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V
Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ME + + ++ K + +K A+S D I S IT S+ H +
Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ DS +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKS--PVRIIVDSRGRIPFDSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSL 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD 344
+VD ++ + S +IG +P+E + +
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIELKDVE 344
>gi|293610032|ref|ZP_06692333.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
gi|292827264|gb|EFF85628.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024]
Length = 361
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 178/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG +
Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P R++LD +L L++K
Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +LVE G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLEIQPLKMLLQTLSKQHQIYDVLVEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ LVD +I Y + ++G+ E + F + D+ L
Sbjct: 293 ATLSTAFLQEGLVDELISYIASTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|262280656|ref|ZP_06058439.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
gi|262257556|gb|EEY76291.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202]
Length = 361
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 177/364 (48%), Gaps = 16/364 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL
Sbjct: 1 MSELKKDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L
Sbjct: 61 RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + + L+ ++ LK+A S D MA S ITG ++
Sbjct: 121 NAGIEVEVGICEDLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSK 235
+ V RA S A++ GI TV+ADD +L R + P RIILD +L L +K
Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRTLGSVDIETIAQPKRIILDRQGRLPLAAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I++ V+ + L I L T+ + +LVE G
Sbjct: 241 ILENPETVMVMGPYRQELADL--------GVIQLETQPLKVLLQTLSKQYQIYDVLVEAG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352
A ++ +F+ LVD +I Y + ++G+ E + F + D+ L
Sbjct: 293 ATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIRL 352
Query: 353 EYIG 356
I
Sbjct: 353 RLIP 356
>gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
gi|6225948|sp|O66534|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
Length = 356
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 123/355 (34%), Positives = 192/355 (54%), Gaps = 6/355 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL ++ G T NP+V ++VK+G ++G G G PHAEV AL +AG
Sbjct: 4 EIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A+GAT YVTLEPC+H+GR+PPC II GI+RVVV DP+ +SG+G++ L GI
Sbjct: 64 EKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGI 123
Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + E E + + T ++R +ITLK A + D + S IT S+
Sbjct: 124 EVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVA 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H+LR ++ A+LVG+ TV+ DDP LT R E P+RIILDP ++ L +K++ T
Sbjct: 184 HILRREATAVLVGVNTVIKDDPHLTVRFVP-TEKQPVRIILDPELEVPLSAKVLNTEEAP 242
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
++I + A ++K + ++ +LK +L L + L+VEGG SF+
Sbjct: 243 TIVIT--KKENEKAEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVEGGPRTLTSFL 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC--VRRDYFGSDVCLEYIG 356
D I+++ + ++GEG L +E++ + + G D+ + +
Sbjct: 301 KEGFFDRIVVFIAPKIMGEGLSIGDLGIRSIEESLKVRKKKVENLGEDLVIFFKR 355
>gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70]
Length = 361
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 128/359 (35%), Positives = 191/359 (53%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M A+ ++ +G TS NP V ++VKDG ++G G G HAEV A+ AGE+
Sbjct: 4 DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKDGEIVGFGAHLKAGELHAEVHAIRMAGEK 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+G+T YVTLEPCSHYG++PPCA ++E G++RVV+ DP+ V+G+G++ L GI V
Sbjct: 64 AKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGIDV 123
Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ + K +TLK A S D I S IT ++ VH
Sbjct: 124 KLGVLKEEADELNRVFFHYIAAKTPFVTLKYASSLDGKIATTTGESKWITSEAAREDVHR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA DAILVG+ TV+AD+P LT RL +P+RI+LD H + LD+ I+
Sbjct: 184 YRAVHDAILVGVNTVIADNPSLTVRLPE-GGKNPIRIVLDTHLRTPLDANILNDGQAETW 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I+V + K+N+ II + +LL +L + +TSL VEGG+ V SF+
Sbjct: 243 IVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRVLGEKRITSLFVEGGSHVHDSFV 302
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
++ V+ I+ Y + +IG P+P+ R + G D+ + I K
Sbjct: 303 RAKAVNEIVAYFAPKIIGGKQAPTPIGGIGFAGMADVMQLEIRRVETIGPDIKIVAIPK 361
>gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA]
Length = 375
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 180/364 (49%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M AL ++ +G T+ NP V +IVK G VIG+G G PHAE +AL
Sbjct: 8 EKDRQYMKMALELAQKGMGFTAPNPMVGAVIVKRGKVIGQGYHRKYGEPHAEREALASCT 67
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ GA+ YVTLEPC HYG+ PPC I+E GIRRV++ DP+ VSG+G++ L + GI
Sbjct: 68 EQPEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGI 127
Query: 125 IVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E L+ + ++ ++ +K A++ D I S +TG ++ V
Sbjct: 128 EVTENVLKEECDKLNEAFFYYIQNQKPYVVMKYAMTMDGKIATYTGASRWVTGEAARMHV 187
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R + I+ G+GTVLADDP LTCR +P+RII D H + L+S+I+KTA
Sbjct: 188 QKQRLKYTGIMAGVGTVLADDPMLTCR--LENGRNPVRIICDSHLRTPLNSRIVKTASTI 245
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVA 299
P I T + D + ++ ++ +L+ +L + S+L+EGG +
Sbjct: 246 PTIFATSSKDQQKIKNYEDMGCKVLDVPEKNGHIDLNRLMELLGAAKIDSILLEGGGTLN 305
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
S + S +V + Y + + G +P+E G D +E
Sbjct: 306 WSALESGIVQKVQTYIAPKLFGGESAKTPIEGKGFPDPASAILLKNSEIIRIGDDFLIES 365
Query: 355 IGKN 358
K+
Sbjct: 366 EVKS 369
>gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia pyrifoliae DSM 12163]
Length = 367
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+
Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ R + LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ +
Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEY 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+++ + + D + I +Y + DL LL +L + + S+ VE
Sbjct: 243 RLVAQPGE--TWLARTSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA A + + + +VD +I+Y + ++G+ G LE F G D+
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360
Query: 351 CLEYIG 356
L
Sbjct: 361 RLTLTP 366
>gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048]
Length = 379
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 125/379 (32%), Positives = 183/379 (48%), Gaps = 17/379 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ ++ G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRILEEAGIKVTTGVLGAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TVL D+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I L IIV ++ ++ NI + +++ +L++L + + SL V
Sbjct: 240 HVITDGLTPTWIIVGKDVSKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG V +F+ + + I+ Y S +IG P+ K + G
Sbjct: 300 EGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQE 363
+D+ + K+ CLQE
Sbjct: 360 NDIKIVATLKSEVTECLQE 378
>gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 360
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 115/345 (33%), Positives = 180/345 (52%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+
Sbjct: 2 EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V
Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ME + + ++ K + +K A+S D I S IT S+ H +
Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ DS +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKS--PVRIIVDSRGRIPFDSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD 344
+ +VD ++ + S +IG +P+E + +
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIELKDVE 344
>gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
200]
gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
200]
Length = 379
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2]
Length = 373
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 365 EVTKCLQEL 373
>gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550]
Length = 379
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
Length = 370
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
Length = 383
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 116/374 (31%), Positives = 187/374 (50%), Gaps = 18/374 (4%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S+ +M+ A++ +R + T NP V C++V+D ++ G G HAEV
Sbjct: 1 MTNSTAYNHEYWMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVN 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ A + +G TAYVTLEPCSH G++ PCA+ +I+ + R+V + DP+ V+GRGL
Sbjct: 61 AIANANGDTQGCTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAM 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + GI V + + L+ +++ + ++ LK+A+S D M S ITG
Sbjct: 121 LKEAGIEVIGPVMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKL 230
++ V LRAQSDAI+ GIG+V+ADDP +T R++ P RII+D +
Sbjct: 181 DARLDVQKLRAQSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSI 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGR 285
+SKI+ + + E + A K +N+ Y + + + L +
Sbjct: 241 PPESKILYPCNQVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQ 300
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVR 342
G+ +LVE GA +A +F+ LVD ++LY + ++G P PL+ +F V
Sbjct: 301 GINEVLVETGAVLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVN 360
Query: 343 RDYFGSDVCLEYIG 356
G D+ L
Sbjct: 361 LSQLGKDIKLTLKP 374
>gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185]
Length = 379
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEADAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R+ILD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196]
Length = 379
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 125/379 (32%), Positives = 183/379 (48%), Gaps = 17/379 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ ++ G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRKLEEVGIEVTTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TVL D+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I L IIV ++ + + NI + +++ +L++L + + SL V
Sbjct: 240 HVITDGLTPTWIIVGKDVNKEKIAPYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG V +F+ + + I+ Y S +IG P+ K + G
Sbjct: 300 EGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQE 363
+D+ + K+ CLQE
Sbjct: 360 NDIKIVATLKSEVTECLQE 378
>gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 378
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 181/369 (49%), Gaps = 14/369 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL
Sbjct: 4 ELAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L
Sbjct: 64 QAGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMN 123
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + ESE + +L R + +I +K+A+S D MA S ITG ++
Sbjct: 124 AGIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKL 230
+ V LRAQS +L G TVLAD LT R + P+R+++D ++
Sbjct: 184 SAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRV 243
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
LD+ + V + + DL+KL+ L RGV +
Sbjct: 244 PLDAPFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEV 303
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFG 347
LVE G +A +F LVD ++ + +G P PL + V+ G
Sbjct: 304 LVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVG 363
Query: 348 SDVCLEYIG 356
+D + +
Sbjct: 364 NDWRVIALP 372
>gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
Length = 360
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 117/345 (33%), Positives = 179/345 (51%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL+ + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+
Sbjct: 2 EEYMKRALKLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG ++ L + GI V
Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQ 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
MME E + ++ K + LK A+S D I S IT S+ H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D + L S +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKS--PVRIIVDSRGRTPLASNVIRDKAAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD 344
+ +VD ++ + S +IG +P+E + +
Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIELKDVE 344
>gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
12442]
gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM
12442]
Length = 373
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 6 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLLAGEEHAEVHALRMAGDK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI V
Sbjct: 66 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 125
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ Y ++ + +T+K A+S D I S ITG +++ VH
Sbjct: 126 TTGVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAIL+G+ TV+AD+P LT R P+RIILD H + L S +I +
Sbjct: 186 YRHTHDAILIGVNTVIADNPSLTTR-LPNGGKHPIRIILDTHLRTPLSSHVITDEMAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + + + ++ + +++ LL +L + + SL VEGG +V SF+
Sbjct: 245 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + I+ Y S +IG P+ + G D+ + +N
Sbjct: 305 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 364
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 365 EVPACLQEL 373
>gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
Length = 368
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 173/363 (47%), Gaps = 9/363 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D + M AL + T NP V C+I V+G G G PHAEV A
Sbjct: 1 MTYFSEVDFQHMQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG ARGATAYVT+EPCSH GR+ C Q +I+ G+ VVV DP +V+G+G+ L
Sbjct: 61 LRQAGGLARGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + L+ + +R + LK+ +S D + S IT
Sbjct: 121 RNAGIEVRVGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTR 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKII 237
++ V RA+S AIL G GTVLADDP LT R + + +P+R++LD ++ +++
Sbjct: 181 ARADVQYWRARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVF 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
AP + V + P+ + + L++LL L RG+ LLVE G
Sbjct: 241 NDQ--APSLHVVHRECPLASSDSEQVMALPGDDQGLHLEQLLHNLSQRGLHDLLVEAGPT 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+A + + + LVD ++LY + ++G+ P + +F G D+ L
Sbjct: 299 LAGNLLKAHLVDELLLYVAPRLLGDLARPLVHLPCFDRLEEALDFALYDVSQLGPDLRLR 358
Query: 354 YIG 356
Sbjct: 359 LRP 361
>gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621]
Length = 379
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 125/379 (32%), Positives = 184/379 (48%), Gaps = 17/379 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ ++ G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGERAKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRRLEEVGIEVTTGVLDAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TVL D+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I L IIV ++ + ++ NI + +++ +L++L + + SL V
Sbjct: 240 HVITDGLTPTWIIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG V +F+ + + I+ Y S +IG P+ K + G
Sbjct: 300 EGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQE 363
+D+ + K+ CLQE
Sbjct: 360 NDIKIVATLKSEVTECLQE 378
>gi|325577912|ref|ZP_08148145.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
ATCC 33392]
gi|325160342|gb|EGC72469.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
ATCC 33392]
Length = 376
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 129/377 (34%), Positives = 190/377 (50%), Gaps = 21/377 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL
Sbjct: 4 TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKAGQPHAERMALA 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+
Sbjct: 64 DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + +E L+ R + ++ LK+A+S D MA S ITG ++
Sbjct: 124 AGIPTAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
V +RA+S A+L TVLADDP L R N + P+R+ILD +
Sbjct: 184 ADVQKMRAKSTALLSTSATVLADDPSLNVRWNQFPDDLKTEYAEETVRQPIRVILDSKNR 243
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ ++ T ++ D V + ++ Y L+T L R V S
Sbjct: 244 VQSSHQLFHTHSPVWLVGSIPRDMSVFPDFCEQILLSENYDFDM----LMTELGKRQVNS 299
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+ VE GA +A S I VD +I+Y S ++G+ LE+ + +
Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVSPKLLGDKARGLCQLPHLEKLADAPLWQLQECER 359
Query: 346 FGSDVCLEYIGKNLCLQ 362
D+ L Y+ NL +Q
Sbjct: 360 IEDDLKLSYLP-NLLIQ 375
>gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 378
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R + +I +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL+KL+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD ++ + +G P PL + V+ G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271]
Length = 379
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 17/380 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ + G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE+A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGEKAKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KKRLEEAGIDVTTGVLEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TV+AD+P LT R P+R+ILD H + S
Sbjct: 181 TGEKARADVHQYRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLV 292
+IK L+ I V ++ + ++ +N+ I + ++ LL L + + SL V
Sbjct: 240 HVIKDGLVPTWIFVGKDVNKEKIASYESENVTIFQMKTKQIEIEDLLFFLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFG 347
EGG ++ SF+ ++ + II Y S I+IG P+ + G
Sbjct: 300 EGGQSIHASFLQTKHFNEIITYISPILIGGKDAPTLFGGNGFAALQDALSLEIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQEL 364
D+ + ++ CLQEL
Sbjct: 360 DDIKIVANARSEVTECLQEL 379
>gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273]
Length = 379
Score = 229 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 126/379 (33%), Positives = 186/379 (49%), Gaps = 17/379 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGERAKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + KR +T+K A+S D S I
Sbjct: 121 KRRLEETGIEVTTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TVL D+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHMHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I L IIV ++ + ++ NI + +++ +L++L + + SL V
Sbjct: 240 HVITDGLAPTWIIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG V +F+ + + I+ Y S +IG P+ K + G
Sbjct: 300 EGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQE 363
+D+ + K+ CLQE
Sbjct: 360 NDIKIVATLKSEVTECLQE 378
>gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 378
Score = 229 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R + +I +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL+KL+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD ++ + +G P PL + V+ G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
syringae 642]
Length = 378
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ A+ +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + +P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + V G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
Length = 370
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4]
gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15]
gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 379
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PA7]
gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7]
Length = 373
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 121/369 (32%), Positives = 176/369 (47%), Gaps = 14/369 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++V+DG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGEKARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVHSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAELEIDDIRAVGD 360
Query: 349 DVCLEYIGK 357
D + +
Sbjct: 361 DWLVTARPR 369
>gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 379
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 125/369 (33%), Positives = 185/369 (50%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D I S ITG ++ VH
Sbjct: 132 TTGILEAEALLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Slackia heliotrinireducens DSM 20476]
gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Slackia heliotrinireducens DSM 20476]
Length = 371
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 123/364 (33%), Positives = 172/364 (47%), Gaps = 16/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D + M A+ +R G T+ NP V +IVKDG VIG G G HAE AL E
Sbjct: 4 DEKMMRRAIELARTAAGWTNPNPLVGAVIVKDGRVIGEGCHERYGDLHAERNALASCTES 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPCSH G+ PPCA ++E GI RVVV DP+ VSGRG+ L GI V
Sbjct: 64 PQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGIQV 123
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + K ++ K A++ D I A + ++ S+ H
Sbjct: 124 EEDFLRQECDGINPVFFHFITTKTPYVVAKWAMTADGKIATATRDARWVSCEASRADTHE 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TVLADDP L R G+ + P+RI+ D ++ LDS ++++A PV
Sbjct: 184 LRHRLAGIMVGVNTVLADDPMLNAR-RGVPSNQPLRIVCDSSLRIPLDSALVRSATEVPV 242
Query: 246 IIVTENDDPV---------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + L A DL L+ L GV S+LVEGG
Sbjct: 243 LVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVDLAALMAHLGESGVDSVLVEGGG 302
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVC 351
+ + S LVD +++Y + V G P+P+ + + D G DV
Sbjct: 303 TLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPVGGAGAALMADALQLGKPQVDIVGDDVR 362
Query: 352 LEYI 355
L Y
Sbjct: 363 LTYR 366
>gi|262376969|ref|ZP_06070195.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
gi|262308007|gb|EEY89144.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145]
Length = 362
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 178/365 (48%), Gaps = 17/365 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M A+ +R T NP+V C+IVKDGIVIG G G PHAEV AL
Sbjct: 1 MVELNQDQVWMRRAIELARQGQYSTKPNPNVGCVIVKDGIVIGEGFHPQAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE+ARGATAYVTLEPC+HYGR+PPCA+ ++E G+ +VVV DP+ V+G+G+Q L
Sbjct: 61 RQAGEQARGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILK 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I V+ + + L+ ++ LKIA S D MA S ITG +
Sbjct: 121 DAEIEVEIGICEDEAHQLNQGFLKAMATGMPYMRLKIASSLDGRTAMASGESKWITGLAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDS 234
+ V RA S A++ GI TVLADD EL R + P RIILD +L L++
Sbjct: 181 RQDVQHWRAISGAVITGIDTVLADDCELNVRQLDGLEDIKTVVQPKRIILDRQGRLPLNA 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
KI+ V+ + L + + L ++ + +LVE
Sbjct: 241 KILVQPETVMVMGPFRQELADLGVL--------HLPVQPLAELLKQLVQQHQIYDVLVEA 292
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVC 351
GA ++ +F+ +LVD +I Y + ++G+ + F G DV
Sbjct: 293 GATLSTAFLQQKLVDELISYVAPTLLGQSARTMFNAEFSHMAEQLRFKLRDVTRLGDDVR 352
Query: 352 LEYIG 356
I
Sbjct: 353 FRLIP 357
>gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Clostridium thermocellum ATCC 27405]
gi|125712853|gb|ABN51345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
thermocellum ATCC 27405]
Length = 365
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 126/361 (34%), Positives = 191/361 (52%), Gaps = 11/361 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+
Sbjct: 5 EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+
Sbjct: 65 AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 124
Query: 128 RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E I ++T V+K+ + LK A++ D I A S +TG ++N VH++
Sbjct: 125 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI
Sbjct: 185 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 244
Query: 247 -----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + +L K DLK L+ L + S+L+EGG + S
Sbjct: 245 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 304
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEYIG 356
I++ +VD ++ + S ++G P+ +E + FG D+ LE
Sbjct: 305 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLEGYI 364
Query: 357 K 357
+
Sbjct: 365 E 365
>gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 378
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + +P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + V G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
2360]
gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
JW20]
gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
2360]
gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum
JW20]
gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM
1313]
Length = 368
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 126/361 (34%), Positives = 191/361 (52%), Gaps = 11/361 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+
Sbjct: 8 EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 67
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+
Sbjct: 68 AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 127
Query: 128 RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E I ++T V+K+ + LK A++ D I A S +TG ++N VH++
Sbjct: 128 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 187
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI
Sbjct: 188 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 247
Query: 247 -----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + +L K DLK L+ L + S+L+EGG + S
Sbjct: 248 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 307
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEYIG 356
I++ +VD ++ + S ++G P+ +E + FG D+ LE
Sbjct: 308 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLEGYI 367
Query: 357 K 357
+
Sbjct: 368 E 368
>gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 373
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTALSLDGKTATVTGESKWITGEEARADVHQ 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 365 EVTKCLQEL 373
>gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
KBAB4]
gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis
KBAB4]
Length = 370
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 12/368 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE
Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATITGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TVL D+P LT R P+R+ILD H + S +I L
Sbjct: 183 YRHIHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSSHVITDGLTPTW 241
Query: 246 IIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ NI + +++ +L++L + + SL VEGG V +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G+D+ + K+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361
Query: 359 ---LCLQE 363
CLQE
Sbjct: 362 EVTECLQE 369
>gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
MMB-1]
gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
MMB-1]
Length = 383
Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 16/369 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+MS A++ ++ + T NP V C+IVKD +IG G A G HAEV AL A E
Sbjct: 8 HTEYMSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMES 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GATAYVTLEPCSH G++PPCA +I+ GI VV + DP+ +V+GRGL L + G+ V
Sbjct: 68 VEGATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQV 127
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + + R E +I LK+A+S D M S ITG ++ V
Sbjct: 128 IGPVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQR 187
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIK 238
LRAQSDAI+ GIG+V+ D+P +T R++ + P+R+I+D + ++KI+K
Sbjct: 188 LRAQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILK 247
Query: 239 TALLAPVIIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
A + V E+ D + + + DL + + +L +G+ +LVE
Sbjct: 248 PGKEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVE 307
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
GA +A +F+ LVD +++Y + ++G P P++ G+D+
Sbjct: 308 TGAELAGAFLREGLVDELVVYVAPKLLGSDARPLMRLPIDVMKDAVELELESVRSVGNDL 367
Query: 351 CLEYIGKNL 359
+ Y K L
Sbjct: 368 KMVYFPKYL 376
>gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272]
Length = 370
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 184/368 (50%), Gaps = 12/368 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE
Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TVL D+P LT R P+R+ILD H + S +I L
Sbjct: 183 YRHMHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ + ++ NI + +++ +L++L + + SL VEGG V +F+
Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G+D+ + K+
Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361
Query: 359 ---LCLQE 363
CLQE
Sbjct: 362 EVTECLQE 369
>gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
Length = 378
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 178/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + V G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus pumilus SAFR-032]
gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus pumilus SAFR-032]
Length = 363
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 183/365 (50%), Gaps = 14/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP R+M+ AL +R G TS NP V +IV++ ++G G G PHAE+ AL
Sbjct: 1 MP---HHERYMNLALENARAMKGQTSPNPLVGAVIVRENEIVGVGAHMKAGEPHAEIHAL 57
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ AG++A+GAT YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L
Sbjct: 58 KMAGDKAKGATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQ 117
Query: 121 QKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + I + +K +TLK ++ D I A S IT S
Sbjct: 118 DAGIQVITGVLEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETS 177
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H +R+ +DAILVG TV+ DDP LT R+ + P+RI+LD L +KI+
Sbjct: 178 RYDAHHIRSINDAILVGAQTVIHDDPSLTARIPN--GNHPIRIVLDSKLSTPLTAKIVTD 235
Query: 240 ALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ I T+ D A L+++L +L + V+SL++EGG
Sbjct: 236 QMAPTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGEKNVSSLMIEGGG 295
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ SF+ +LVD +++Y + +IG PS + + + G D+
Sbjct: 296 QINASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQLSVETLGKDIK 355
Query: 352 LEYIG 356
+
Sbjct: 356 ITGYP 360
>gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32]
Length = 368
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 117/370 (31%), Positives = 187/370 (50%), Gaps = 11/370 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ F M A+ +R VG T+ NP+V C+IVKDG ++G G G PHAE+ AL +
Sbjct: 1 MTDFAENMMKRAVSLARKGVGKTAPNPAVGCVIVKDGAIVGEGWHRKAGTPHAEIHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A GA +VTLEPCSH+G++PPCA +I + RV V + DP+ RV G+G+ L
Sbjct: 61 AGALAEGADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E + + ++ + LK A++ D I AG S +T S+
Sbjct: 121 GIQVEAPLLEEKCRALNEPFIKHVTTGLPFVILKTAMTMDGKIATAGMDSKWVTSEKSRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LR++ D I+VG+GT++ DDP LT R+ G +P+R+++D ++ D+ ++
Sbjct: 181 YVHKLRSELDVIMVGVGTIIKDDPLLTSRIPG--GRNPLRVVVDSKLRIPPDAHVLHCDS 238
Query: 242 LAPVIIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A ++ E LA + D DL L+ L RGV S+L+EGGA
Sbjct: 239 TAKTVVATISSDEAQVSRLAGLGAEVLSCGEDGDRVDLCCLMAKLGKRGVQSVLLEGGAE 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353
+A + ++D + + + ++ G+ G V G D+ ++
Sbjct: 299 LAGEALRKGIIDKCMFFYAPKLVAGDGLGPFAGNGAGKMADALKLQWVTVTKIGVDILVQ 358
Query: 354 YIGKNLCLQE 363
+ +CLQ
Sbjct: 359 GYPEKICLQG 368
>gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876]
Length = 379
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGIGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEQARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAIL+G+ TV+AD+P LT R P+R+ILD H + S +I L
Sbjct: 192 YRHTHDAILIGVNTVIADNPHLTTR-IPNGGKHPIRVILDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
SK2]
gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
SK2]
Length = 377
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 127/375 (33%), Positives = 187/375 (49%), Gaps = 20/375 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D ++M+ AL+ +R + T NP V C++V+DG V+G G A G PHAE AL
Sbjct: 1 MSFSAADHQYMARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARGATAYVTLEPCSH GR+ PCA +I+ G+ RVV ++DP+ V+G+GLQ L+
Sbjct: 61 AQAGERARGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLA 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI +E+E + +++R +R +I +KIA S D MA S ITG +
Sbjct: 121 DAGIATAVGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-------------QEHSPMRIILDP 226
+ V LRA+S A++ G+GTVLAD P T R P+R+ILD
Sbjct: 181 REDVQRLRARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDR 240
Query: 227 HFKLSLDSKIIKTALLAPVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
+ D ++ ++ L A + + DL++LL L
Sbjct: 241 TLRTPPDVPVVSALGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIELNR 300
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMC 340
R +LVE GA +A +F+ L D I++Y + ++G P L +
Sbjct: 301 RECNEVLVECGATLAGAFVREGLFDEILVYMAPTLLGSSARPLLGLPQLASMSEKVALKW 360
Query: 341 VRRDYFGSDVCLEYI 355
G D+ L +
Sbjct: 361 QDVRQVGDDLRLTLV 375
>gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 360
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 119/345 (34%), Positives = 179/345 (51%), Gaps = 10/345 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E
Sbjct: 2 EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V
Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
MME E + ++ K + LK A+S D I S IT S+ H +
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKI 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VG+ TV+ D+P LT RL G + P+RII+D ++ LDS +I+ +I
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGYKN--PVRIIVDSRGRIPLDSNVIRDKTAKTII 239
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
TE + +I LK+L+ L RG+ S+L+EGG + S
Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD 344
+VD ++ + S +IG +P+E + +
Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEGIGFSDIGNSIELKDVE 344
>gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843]
Length = 365
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/358 (31%), Positives = 177/358 (49%), Gaps = 8/358 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD M L +R +G TS NP V +IV++G +IG G G PHAEV AL +A
Sbjct: 5 TEFDRTMMQRCLTLARQALGRTSPNPLVGAVIVQEGTIIGEGFHPGAGQPHAEVFALRQA 64
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ARGAT YV LEPC+HYGR+PPC++ I++ GI++VVV + DP+ V+G+G+Q L G
Sbjct: 65 AEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAG 124
Query: 124 IIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I +E + L+ ++ K+ LK A++ D I S IT S+
Sbjct: 125 IETLVGVEESECLQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 184
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR+ DAI+VG TV D+P LT +H+P+R+++ L + + T+
Sbjct: 185 VHQLRSACDAIIVGGSTVRQDNPHLTTHGLS--DHNPLRVVMTRSLDLPSSAHLWDTSQF 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ + + L K + +I ++ L RG +L E G ++ +
Sbjct: 243 PTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
I +V II + + +IG P+ + + V +Y D+ +E
Sbjct: 303 IAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLKNVTVNYLNPDILIEGY 360
>gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
39016]
gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
39016]
Length = 373
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 173/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAb1]
Length = 373
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 174/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLVELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 364
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 121/364 (33%), Positives = 180/364 (49%), Gaps = 10/364 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV A
Sbjct: 1 MSAFSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L
Sbjct: 61 LCAAGDRARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V+ ME++ + +L+R R + +K+ S D +A S ITG
Sbjct: 121 RAAGVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKI 236
++ V RA++ AIL G GTVLADDP LT R P+R++LD + S +
Sbjct: 181 ARADVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRS--LSCV 238
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
AP + + L + DL+ +L +L RG+ + VE GA
Sbjct: 239 KVRDGTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGA 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ + +++ LVD +++Y + +++G+ P + + G+D+ L
Sbjct: 299 TLCGALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358
Query: 353 EYIG 356
Sbjct: 359 LLRP 362
>gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 367
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 139/359 (38%), Positives = 196/359 (54%), Gaps = 8/359 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL
Sbjct: 1 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L
Sbjct: 61 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 120
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V + +E + A+LT KR +TLK A++ D I S ITG ++
Sbjct: 121 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++
Sbjct: 181 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
VI V+E DP R ++ + +L +LL L TSLLVEGGAAV
Sbjct: 241 APTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLDWLGAHDCTSLLVEGGAAVN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
SF++ VD I + + +++G G P+P+ + + + G+D+ +
Sbjct: 301 WSFLSGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLHDMHVEQVGADLLVT 359
>gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W]
Length = 379
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 183/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
4222]
gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL
4222]
Length = 379
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A +
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D I S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 371 EVTECLQEL 379
>gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842]
Length = 370
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A +
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D I S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K + G D+ + +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361
Query: 359 ---LCLQEL 364
CLQEL
Sbjct: 362 EVTECLQEL 370
>gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans
743B]
Length = 364
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M AL ++ G S NP V +IVK+G +IG G G PHAEV A+ +
Sbjct: 1 MNESYMRRALELAKLGAGRVSPNPMVGAVIVKNGEIIGEGYHKQYGGPHAEVNAIASVSD 60
Query: 66 E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+T YVTLEPC HYG++PPC + II+ I+ VV+ DP+ V+G+G++ L +G
Sbjct: 61 NGELEGSTIYVTLEPCCHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAEG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E E +++ K + +K A++ D I + S IT S+
Sbjct: 121 IEVIVGVLEEECLKINESFMKYIKTKTPFVIMKAAMTLDGKIATSTGDSKWITNEESRIN 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + I+VGI TVL DDPELTCRL G P RII+D K+ L++K++
Sbjct: 181 VHKLRNKVSGIMVGINTVLKDDPELTCRLEGGAS--PKRIIVDSGLKIPLNAKVLNAKDK 238
Query: 243 -----APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A E+ VL K I +LKKL+ L V S+L+EGG
Sbjct: 239 VEVIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLKKLMEELGNLKVDSVLLEGGGT 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S + ++D + Y + +IG +P+E + K N +R FG D+ +
Sbjct: 299 LCFSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINKIKDAINVKDLRVSTFGGDILI 358
Query: 353 E-YIGK 357
E YI K
Sbjct: 359 EGYIRK 364
>gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
gi|167654296|gb|EDR98425.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662]
Length = 354
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 117/356 (32%), Positives = 181/356 (50%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ ++ G T+ NP V +IVKDG VIG G G HAE AL+ E+ +GA
Sbjct: 1 MRRAIELAQKGTGHTNPNPLVGAVIVKDGQVIGEGFHEAYGGLHAERNALKSCTEDPKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC HYG++PPC + +I+ GIR+V V DP+ +V+G G++ L + GI V+ +
Sbjct: 61 ELYVTLEPCCHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKVETGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + + ++ LK A++ D I + S ITG ++ V LR +
Sbjct: 121 LDEECRELNDIFFYYITHDTPYVALKYAMTLDGKIAVKTGESKWITGGEAREHVQFLRHR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AIL GI TV+ DDP L R+ G ++P+R+I D ++ + SKI+++A + P II
Sbjct: 181 YAAILTGIHTVIGDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTIIAA 238
Query: 250 ENDDPVLALAF---RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + I DL +L+ IL + S+LVEGGA + S I +
Sbjct: 239 CERNEKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSVIQAG 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
V+ + + + + G SP+E ++K FG D+ LEY +
Sbjct: 299 AVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEYKVR 354
>gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Haemophilus parainfluenzae T3T1]
Length = 376
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 129/378 (34%), Positives = 193/378 (51%), Gaps = 21/378 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL
Sbjct: 4 TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALA 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+
Sbjct: 64 DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G ++ + + +L R + ++ LK+A+S D MA S ITG ++
Sbjct: 124 AGIPSAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
V +RA++ A+L TVLADDP L R N + P+RIILD +
Sbjct: 184 ADVQKMRAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNR 243
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ ++ T ++ D V F I+ + D L+T L R V S
Sbjct: 244 VQPSHQLFHTHSPVWLVGSIPRDMSV----FPDFCEQILLPENYDFDLLMTELGKRQVNS 299
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+ VE GA +A S I VD +I+Y + ++G+ LE+ + +
Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVAPKLLGDNARGLCQLPHLEKLADVPLWQLQECER 359
Query: 346 FGSDVCLEYIGKNLCLQE 363
G D+ L Y+ NL ++E
Sbjct: 360 IGDDLKLSYLP-NLLIKE 376
>gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
gi|167710137|gb|EDS20716.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1]
Length = 361
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/363 (34%), Positives = 185/363 (50%), Gaps = 13/363 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+ +GA
Sbjct: 1 MRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI + +
Sbjct: 61 EIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETETGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E + + + LK A++ D I A S ITG ++ VH LR Q
Sbjct: 121 LEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTLRHQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA P II T
Sbjct: 181 YAAIMAGIGTVLADDPMLNARI--EHGNDPIRVICDSNLRISEGSNIVKTAREIPTIIAT 238
Query: 250 ENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ D +K I ++K++L L + S+LVEGG + S I +
Sbjct: 239 ISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESLIKN 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKNLC 360
V + Y + + G +P+E +E+ F ++ G+D+ LE ++ C
Sbjct: 299 DCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLEGKVRS-C 357
Query: 361 LQE 363
L E
Sbjct: 358 LPE 360
>gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2]
gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
LESB58]
gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
LESB58]
Length = 373
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 174/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676]
Length = 379
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 183/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRTLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALFLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
NCIMB 8052]
gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii
NCIMB 8052]
Length = 361
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 111/363 (30%), Positives = 176/363 (48%), Gaps = 13/363 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL ++ +G + NP V +IVKD +IG G G HAE A++ A +
Sbjct: 1 MDEKYMEIALELAKRGIGKVNPNPLVGAVIVKDNEIIGEGYHECYGEAHAERNAVKNATK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T YVTLEPC+HYG++PPC IIE +RVV+ + DP+ VSG+ ++ L Q GI
Sbjct: 61 SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E K ++ K + LK +S D I S IT S+
Sbjct: 121 VVVGIKEKECKELNEIFIKYITSKIPFVILKSGMSIDGKIATYSGQSKWITSKESREDSQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA- 243
LR + +I+VG+ TV+ D+PELTCR+N +RII+D + ++ L+SK++ + A
Sbjct: 181 HLRNRFHSIMVGVNTVIEDNPELTCRIND--GKKLIRIIVDSNLRIPLESKVLTNSDKAA 238
Query: 244 ---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + L K + +LK+L+ + G+ S+L+EGG +
Sbjct: 239 IVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVKRVGEEGIDSILIEGGGTLNF 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE-Y 354
S + R+VD + Y + +IG + + + G D+ LE Y
Sbjct: 299 SALEERIVDKVRFYIAPKIIGGQSSRNSIAGKGFFKLDDAVRLEDINYRTIGEDLVLEGY 358
Query: 355 IGK 357
+ K
Sbjct: 359 VAK 361
>gi|156973476|ref|YP_001444383.1| pyrimidine deaminase [Vibrio harveyi ATCC BAA-1116]
gi|156525070|gb|ABU70156.1| hypothetical protein VIBHAR_01166 [Vibrio harveyi ATCC BAA-1116]
Length = 374
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 173/364 (47%), Gaps = 8/364 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+
Sbjct: 9 EFTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L
Sbjct: 69 MAGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRD 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ +I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA S IL TV+ D+ L R L + + + + +
Sbjct: 189 QDVQRYRALSCGILSTSKTVIDDNASLNVRWEDLPKSVQTQYP-QEDVRQPPRVIFDRQS 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298
L+ + + D + ++ + + + + L + G + L VE GA +
Sbjct: 248 QLSDDLKLFNTDGERIIVSQGSDMVPELGENGQIDLAATLRNVASGYHINHLWVEAGATL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 308 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRMVGVDIRITA 367
Query: 355 IGKN 358
K
Sbjct: 368 TVKR 371
>gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris MG1363]
gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp.
cremoris NZ9000]
gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 362
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 185/359 (51%), Gaps = 12/359 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D FM+ A+ +R G + NP V +IV DG +IG+G G HAE+ A +
Sbjct: 2 ENDEHFMNLAILLARKGGGNVNPNPQVGAIIVNDGRIIGQGYHEKYGEAHAEINAFKSCI 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E G+T YVTLEPC+H G+ PPC + II+ ++RVV+ DP+ V+G+G++ + + GI
Sbjct: 62 ESPEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGI 121
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +++E E K + ++ ++ +K A++ D I S ITG ++ +V
Sbjct: 122 DVSLKVLEKECKDLNKIFFHYVTQRTPYVMMKYAMTLDGKIATYKGQSKWITGEKARQKV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R++ AI++G+ T+L DDP+LT R+ +P+RII D + L SKI+ TA
Sbjct: 182 HEDRSRFMAIMIGVETLLKDDPQLTARIKN--GINPIRIICDTQLRTPLTSKIVSTAFEI 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVA 299
P II T N++ AF + I+ L+T L R + SL++EGGA +
Sbjct: 240 PTIIATSNENIQKHQAFIEAGCEILLVSSISKHLDLKDLITKLGEREIDSLILEGGARLN 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + +V + Y + + G PS +E +E + Y G D+ LE
Sbjct: 300 ASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQAYLLDRPQVAYLGEDILLE 358
>gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
D16]
gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium
D16]
Length = 368
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 124/357 (34%), Positives = 180/357 (50%), Gaps = 12/357 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL +R +G TS NP V ++VKDG +IG+G G HAE +AL+
Sbjct: 3 DTDYMNLALELARRGMGWTSPNPMVGAVLVKDGEIIGQGWHTRYGELHAEREALKNCTGS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
G T YVTLEPC H GR PPC Q I++ GI RVVV DDP+ V+G+GL+ L + GI V
Sbjct: 63 PAGTTLYVTLEPCCHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGIQV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + +R ++ LK A++ D I S +TG ++ +VH
Sbjct: 123 ETGVCKQACDALNQVFFHFITTRRPYVVLKYAMTMDGKIATRTGASKWVTGETARKRVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + AIL G+GTVLADDP LTCR+ G +P+R+I D H + L+S+I++TA P
Sbjct: 183 DRHRYRAILAGVGTVLADDPLLTCRMEG--GRNPIRVICDTHLRTPLESQIVRTAQEVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+ T + + + R L+ L + S+L+EGG + S
Sbjct: 241 ILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALMDRLGAENIDSVLLEGGGTLNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
+ LV + Y + + G G SP+E +E VR G D LE
Sbjct: 301 ALEQGLVQKVQAYIAPKLFGGGAAKSPVEGLGVEIPDQAVRLIHTTITPLGDDFLLE 357
>gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110]
Length = 364
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 182/364 (50%), Gaps = 9/364 (2%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + D + M L +R +G TS NP V +IVKDG +IG G G PHAEV A
Sbjct: 1 MIIPDNVDQQMMQRCLTLARQGLGYTSPNPLVGAVIVKDGKIIGEGFHPKAGEPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L
Sbjct: 61 LREAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E + L+ ++ + LK A++ D I + S +TG
Sbjct: 121 QEAGIEVTVGVEEAACLRLNEAFCHRILNNQPFGILKYAMTLDGKISSSTGHSAWVTGTK 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH +RA DA++VG TV D+P L ++ + +P+R+++ + L ++ +
Sbjct: 181 SRQLVHQIRAGCDAVIVGGNTVRRDNPHL--TIHQVTGVNPLRVVMSRNLHLPEEANLWN 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ ++ ++P L R K + +I +++ IL R + S+L E G +
Sbjct: 239 VDIAPTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYERQLCSVLWECGGVL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
I R++ I+ + + +IG SP+ + L+K V D+ +E
Sbjct: 299 GAEAITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDKMSDALPLQNVSFRQVERDILVE 358
Query: 354 YIGK 357
+
Sbjct: 359 GYLE 362
>gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli
95/1000]
gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli
95/1000]
Length = 365
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 16/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
++M A+ ++ G TS NP V +IVKD VIG G G HAE+ A A
Sbjct: 1 MHEKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDRVIGIGYHKKYGENHAEINAFLNAKE 60
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GE+ GA+ YVTLEPCSHYG++PPCA II+ +++V++ D + +V+G G++ L
Sbjct: 61 NGEDVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDA 120
Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI +V ++E E + + K + +K A++ D I S IT ++
Sbjct: 121 GIEVVVNVLEEECRKLNEVFFYYIANKIPFVVMKYAMTMDGKIATVSGKSKWITSEKTRE 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H R + AI+VGI TV+ D+P L CR +P+RIILD K+SLDS I KT+
Sbjct: 181 HSHRFRNKYSAIMVGINTVIEDNPMLNCR--LPNTRNPIRIILDSSLKISLDSNICKTSK 238
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLLVEGGA 296
I T + D + II + + + L L+ + + S+ VEGGA
Sbjct: 239 DIKTFIATVSGDEKKIKELEGLGVEIIKTESDNGRVSLKELMKILGEEKNIDSVYVEGGA 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
++ S + +LV+ ++Y + + G SP+ + + D+
Sbjct: 299 SLHASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGEGIDEPDNAIRLVGNSITKIEEDLF 358
Query: 352 LEYIGK 357
LEY K
Sbjct: 359 LEYYLK 364
>gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
2192]
gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
2192]
Length = 373
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 173/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + +R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 373
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 174/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLVELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLTRMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 370
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 182/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 3 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 183 YRHIHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K G D+ + +N
Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407]
gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 379
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 124/369 (33%), Positives = 182/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 192 YRHIHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + I+ Y S +IG P+ K G D+ + +N
Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 370
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 371 EVTKCLQEL 379
>gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO1]
gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO1]
Length = 373
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 174/368 (47%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V LRA+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|220931696|ref|YP_002508604.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino)uracil
reductase [Halothermothrix orenii H 168]
gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino)uracil
reductase [Halothermothrix orenii H 168]
Length = 371
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 189/361 (52%), Gaps = 13/361 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+M L +R G T+ NP V +IV++G ++G+G Y G PHAE+ ALEEAG
Sbjct: 7 DTHHSYMQKVLELARKGEGYTAPNPLVGAIIVREGEIVGQGFHQYYGGPHAEILALEEAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YV LEPC HYG++PPC + II+ G++RV+ + DP+ V+G+G++ L + GI
Sbjct: 67 ERARGATLYVNLEPCCHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGI 126
Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + L+ R + R + LK A++ D I S I+ ++
Sbjct: 127 EVEVGLLRKEAERLNEVYIRYISSDRPFVYLKSALTLDGFIATVTGDSRWISNEKARLFA 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR + DA+LVGIGT+L DD LT RL + +RIILDP + D+++I
Sbjct: 187 HTLRHKVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRIILDPELSIPPDARVINQKSRK 246
Query: 244 PVIIVTENDDPVLALAF-------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
I+V D ++ + LK LL IL +G++S+LVEGG
Sbjct: 247 RTILVCGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLKALLRILHKQGISSILVEGGG 306
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEG--YLEKNFMCVRRDY--FGSDVC 351
V +SF+ LVD + + + I++G GI EG +EK + Y F ++
Sbjct: 307 RVNYSFLKEGLVDKVYFFIAPIILGGDDGIRVFSGEGVADIEKAWKLRDVQYNFFDDNIL 366
Query: 352 L 352
+
Sbjct: 367 I 367
>gi|260899221|ref|ZP_05907616.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ4037]
gi|308106651|gb|EFO44191.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ4037]
Length = 374
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 123/376 (32%), Positives = 183/376 (48%), Gaps = 28/376 (7%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+
Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L +
Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229
V RAQS IL TVL D+ L R + L + P R+ILD K
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
LS D K+ T ++ + P L + + L ++ +
Sbjct: 249 LSDDLKLFSTEGERIIVSSEGDVCPQLDQSGKIDVTAT----------LKAVVTQHNINH 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345
L VE GA +A S I + LVD +I+Y + ++G G L E +
Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVRM 358
Query: 346 FGSDVCL--EYIGKNL 359
G D+ + + K +
Sbjct: 359 VGRDIRITATLVRKEI 374
>gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
NJ8700]
gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
NJ8700]
Length = 374
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 182/371 (49%), Gaps = 17/371 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S DA FM AL ++ + NP+V C++VK+G +IG+G A G PHAEV AL E
Sbjct: 5 FSLKDAEFMQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALRE 64
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPC+HYGR+PPCA+ +++ G+R V+ + DP+ V+G+GL L+
Sbjct: 65 AGENARGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADA 124
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + E L+ R R + LK+A+S D MA S ITG ++
Sbjct: 125 GIESAVGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARA 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA++ AIL TVLAD+P L R L + R + H + + +
Sbjct: 185 DVQQYRAKASAILSTSQTVLADNPSLNVRWAELPQEVQSR-YAEQHLRQPVRVILDSAHK 243
Query: 242 LAPVIIVTENDDPVL-----------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + D PV A + I L+ L+T L R + +L
Sbjct: 244 VRSDFNLFLTDSPVWLAGKDKFQLNGFPASTEYLQLIPNQGESHLQTLMTELGRRQINTL 303
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
VE GA +A + I LVD +I+Y + ++G+ L + + +
Sbjct: 304 WVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTKLADAPLWELQLCEPV 363
Query: 347 GSDVCLEYIGK 357
G+D+ L YI K
Sbjct: 364 GNDLKLIYIRK 374
>gi|28897453|ref|NP_797058.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|260366283|ref|ZP_05778739.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
K5030]
gi|260876413|ref|ZP_05888768.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AN-5034]
gi|260898684|ref|ZP_05907180.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
Peru-466]
gi|28805665|dbj|BAC58942.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086936|gb|EFO36631.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
Peru-466]
gi|308092982|gb|EFO42677.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AN-5034]
gi|308112701|gb|EFO50241.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
K5030]
Length = 374
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 10/367 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+
Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L +
Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RAQS IL TVL D+ L R S + + +
Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVR-WDDLPQSVQAHYELTEVRQPARVILDRQQ 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAV 298
L+ + + + + ++ + + L ++ + L VE GA +
Sbjct: 248 KLSDDLKLFSTEGERIIVSSEGDVCPQLDQSGKIDLTATLKAVVTQHNINHLWVEAGATL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL-- 352
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 308 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVRMVGRDIRITA 367
Query: 353 EYIGKNL 359
+ K +
Sbjct: 368 TLVRKEI 374
>gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens TA208]
gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens LL3]
Length = 371
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 172/361 (47%), Gaps = 9/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M+ A+ +R G T NP V ++VK+G ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMAGS 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GA YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L GI
Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIE 120
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D S IT ++
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG GTV AD+P LTCR P+R+ILD + + ++
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCR-LPDAVKQPVRVILDTKLTVPETANVLTDGAAPT 239
Query: 245 VIIV--TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + L + + D + ++L+IL G+ S+ VEGGA+V SF
Sbjct: 240 WIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
+ + D + Y + +IG PS + + + + G D+ L I K
Sbjct: 300 VKAGCFDELHFYFAPTLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPK 359
Query: 358 N 358
+
Sbjct: 360 D 360
>gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
R551-3]
gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
R551-3]
Length = 361
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 179/360 (49%), Gaps = 7/360 (1%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D M+ ALR + T NP V C+I V+G+G G PHAEV AL
Sbjct: 4 PFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L
Sbjct: 64 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V M ++ + +L+R R + +K+A S D MA S ITG ++
Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA++ AIL G TVLADDP LT RL + P+R++LD + S++ +
Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVREG- 242
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
AP + + A + DL +L +L RG+ + E GA +A
Sbjct: 243 -GAPTLYLHAAAVSAPDAADAEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLAG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + VD ++LY++ ++G+ G P ++ ++ V + G D+ L
Sbjct: 302 ALLRGGWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRLLLRP 361
>gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
Length = 378
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 175/365 (47%), Gaps = 17/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 11 LDAHYMARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALRAAGD 70
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI
Sbjct: 71 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIE 130
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + +L R + +K+A+S D MA S ITG ++ V
Sbjct: 131 VRSGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQ 190
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLDS 234
LRA++ +L G TVLAD LT R + P+R+++D ++ L++
Sbjct: 191 RLRAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNA 250
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K + VT + D R L RGV +LVE
Sbjct: 251 PFFKAGPALVITCVTAQNQFPRGPECLVVPGVEGQVDLRSALV---ALAARGVNEVLVEA 307
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
G ++A +F LVD +++ + +G P PLE+ G D
Sbjct: 308 GPSLAGAFAQQGLVDEYVIFVAGKFLGCAARPLLDWPLEKLADAPQLKITEMRAVGDDWR 367
Query: 352 LEYIG 356
+ I
Sbjct: 368 VTAIP 372
>gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
Length = 370
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 184/369 (49%), Gaps = 12/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+
Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V
Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEETRIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + KR +T+K A+S D S ITG ++ VH
Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVG+ TV+AD+P LT R P+R++LD H + S +I L
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR-IPNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
IIV ++ ++ KNI I + + ++ LL+ L + + SL VEGG ++ SF+
Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ + ++ Y S +IG P+ K + G D+ + +N
Sbjct: 302 KTNNFNEVVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361
Query: 359 L---CLQEL 364
CLQEL
Sbjct: 362 EVTKCLQEL 370
>gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
majuscula 3L]
gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya
majuscula 3L]
Length = 372
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 115/363 (31%), Positives = 186/363 (51%), Gaps = 8/363 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P + + ++ +R +G T+ NP V C+IV++G ++G G G PHAEV AL
Sbjct: 10 PETPLAQAMIQRCIQLARQALGRTTPNPLVGCVIVRNGEIVGEGFHPAAGQPHAEVFALS 69
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAGE A+GAT YV LEPC+HYGR+PPC + +I+ G+ +VVV + DPD RVSG+G++ L
Sbjct: 70 EAGENAQGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGIERLRA 129
Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E + ++ R + +R LK A++ D I S ITG S+
Sbjct: 130 AGIEVVVGVEESACRQLNEGFIHRILYQRPLGILKYAMTLDGKIAATSGHSKWITGEKSR 189
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+ VH LR+ DA++VG TV D+P LT + +P+R+I+ L D+++ +T
Sbjct: 190 SWVHQLRSACDAVIVGGNTVRQDNPNLTS--HNPNAPNPLRVIMSRTLDLPRDARVWQTD 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ ++ + L + + ++ + +++ L R ++ +L E G +A
Sbjct: 248 DVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQLSRVLWECGGILAA 307
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
+ I V I+ + + +IG G PSP+ + L V GSD +E
Sbjct: 308 NAIADGAVQKILAFIAPKIIGGHGGPSPVGDLGLTLMTDALTLERVSWRQLGSDYVVEGY 367
Query: 356 GKN 358
N
Sbjct: 368 IPN 370
>gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
YUAN-3]
gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense
YUAN-3]
Length = 367
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 184/367 (50%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL ++ G + NP V ++VKDG VIG G G HAE AL E
Sbjct: 3 DETYMKLALEYAEKGCGWVNPNPMVGAVVVKDGRVIGTGWHRRYGELHAERNALASCTEP 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GAT YVTLEPC HYG++PPC I+E GI RVVV DP+ V+G+G++ L Q+GI V
Sbjct: 63 PQGATLYVTLEPCCHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGIEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + ++ +K A++ D I S ITG ++ +
Sbjct: 123 AEGVLGDACTGINEVFFHFIRTRMPYVVMKYAMTMDGKIATCSGQSKWITGETARRRTQE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + I+VGIGTVL DDP LTCR +P+RI+ D + L+++I++ AP
Sbjct: 183 DRHRYSGIMVGIGTVLTDDPLLTCR--LPDGRNPVRIVCDSRLRTPLNAQIVRITGEAPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I+VT + D LA +R ++ +D L+T L +G+ S+L+EGG A+ S
Sbjct: 241 ILVTCSRDEALAYPYRDAGCEVLTLPAKDGHVDLRALMTALGKKGIDSVLLEGGGALNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVR--RDYFGSDVCLEYIG 356
+ S +V+ + Y + + G SP+ + E+ F G D+ LE
Sbjct: 301 ALQSGIVNKVQAYVAPKLFGGINAKSPVAGMGVESPEQAFRLASPQVTRLGEDILLESEV 360
Query: 357 KNLCLQE 363
+ C QE
Sbjct: 361 LS-CSQE 366
>gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC586]
gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC586]
Length = 367
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +++ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + + L + +
Sbjct: 181 ARKDVQCFRAQASAILSTSQTVLADNASLAVRWHDLPKSVQAQ-YAETDLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A ++ I + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENADLCISTENGKLDLRELLAQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
C3719]
gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
C3719]
Length = 373
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 172/368 (46%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFKLS 231
V LRA+S +L T+LADD L + P+R+++D ++
Sbjct: 181 AVQRLRARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|269962351|ref|ZP_06176701.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
harveyi 1DA3]
gi|269832847|gb|EEZ86956.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
harveyi 1DA3]
Length = 374
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 106/364 (29%), Positives = 170/364 (46%), Gaps = 8/364 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+
Sbjct: 9 EFTPQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L
Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRD 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ ++ LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLENEAIELNKGFIKFMQTGMPYVQLKMAASLDGQSALSNGQSQWITSPKAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA S IL TV+ D+ L R +S + + + +
Sbjct: 189 QDVQRYRALSGGILSTSKTVIDDNASLNVR-WDDLPNSVKAHYPQDEVRQPPRVILDRQS 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG--VTSLLVEGGAAV 298
L+ + + D + ++ + + + V G + L VE GA +
Sbjct: 248 QLSDDLKLFNTDGERIIVSQGGDIAPELDKNGQVDLAATLQAVASGTHINHLWVEAGATL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 308 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAHVIDLTITDVRMVGVDIRITA 367
Query: 355 IGKN 358
K
Sbjct: 368 TVKR 371
>gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Dixon]
gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Xylella fastidiosa M12]
gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Dixon]
gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Xylella fastidiosa M12]
Length = 364
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 176/362 (48%), Gaps = 6/362 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D M AL + T NP V C+IV DG V+G G G PHAEV A
Sbjct: 1 MSAFSADDHCHMERALCLAERGAYTTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L
Sbjct: 61 LRAAGDCARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V+ ME++ + +L+R R + +K+ S D +A S ITG
Sbjct: 121 RAAGVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RA++ AIL G GTVLADDP LT RL G + + + +L S +
Sbjct: 181 ARADVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKV 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
AP + + L + DL +L +L RG+ + VE GA +
Sbjct: 241 RDGTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLGAVLRLLGERGINEVQVEAGATL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ +++ LVD +++Y + +++G+ P + + G+D+ L
Sbjct: 301 CGALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRLLL 360
Query: 355 IG 356
Sbjct: 361 RP 362
>gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 378
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + +P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + V G+D
Sbjct: 307 AGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
ATCC 19194]
gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
ATCC 19194]
Length = 366
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 184/365 (50%), Gaps = 20/365 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A
Sbjct: 13 QYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQAGENA 72
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+ AT YVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+
Sbjct: 73 KDATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVE 132
Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ +E L+ +L ++ LKIA S D MA S ITG +++ V
Sbjct: 133 TGVCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHW 192
Query: 187 RAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
RA S A++ GI TVLADD EL R ++ P RIILD +L L +KI+K
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILKNPET 252
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V+ + L I + L T+ + +LVE GA ++ +F
Sbjct: 253 VMVMTPFRQELADL--------GVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTAF 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ LVD +I Y + ++G+ + ++ F V G D+ L +
Sbjct: 305 LQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP--- 361
Query: 360 CLQEL 364
+QE+
Sbjct: 362 -IQEM 365
>gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato Max13]
gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato K40]
gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato NCPPB 1108]
Length = 378
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAG
Sbjct: 7 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + ++ R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 SVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 TPFFQAGSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + + G+D
Sbjct: 307 AGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
12563]
gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM
12563]
Length = 368
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 16/365 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ ++M A+ ++ G TS NP V +IVKD +IG G G HAE+ A +A
Sbjct: 4 NTHEKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDKIIGIGYHQKYGENHAEINAFLDAQ 63
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
GE+ GA YVTLEPCSHYG++PPCA II+ I++V++ D + +V+G G++ L
Sbjct: 64 KKGEDVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKD 123
Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI +V ++E E + + KR + +K A++ D I + S IT ++
Sbjct: 124 AGIEVVVNVLEEECRKLNEVFFYYIANKRPFVVMKYAMTIDGKIASSSGKSKWITSEKAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R + AI+VGI TV+ D+P L CR +P+RIILD K+ L+S I KTA
Sbjct: 184 EHSHRFRNKYSAIMVGINTVIEDNPTLNCR--LPNTRNPIRIILDSSLKIDLNSNICKTA 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-----RGVTSLLVEGG 295
I T ++D I II + + + L L+ + + S+ VEGG
Sbjct: 242 KEIKTFIATISNDEKKIKEIESLGIEIIKTESDNGRVNLKELMKILGEDKNIDSVYVEGG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCV--RRDYFGSDV 350
A++ S I RLV+ +++Y + + G SP+ ++ F + D+
Sbjct: 302 ASLHASLIEERLVNKVLVYIAPKIFGGIKAKSPIGGEGIDDPNNAFKLIGGDITKIDEDL 361
Query: 351 CLEYI 355
LEY
Sbjct: 362 FLEYY 366
>gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [NC10 bacterium 'Dutch sediment']
Length = 372
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 184/365 (50%), Gaps = 12/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D RFM AL + G TS NP V ++V+ G ++G G A G PHAEV ALE
Sbjct: 2 FTPDDERFMRHALVLAEKGRGRTSPNPMVGAVVVQHGRIVGEGYHAQAGKPHAEVVALEY 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG AR A YVTLEPC HYGR+PPC II+ GIRRVVV DP+ VSGRG+Q L
Sbjct: 62 AGGAARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+IVD + S L+ ++ + + LK AVS D I S ++G S+
Sbjct: 122 GVIVDLGLRSADATALNEAFIKFMKHRTPFVVLKAAVSLDGKIATRTGDSRWVSGERSRE 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+H LR Q DA++VGIGTV D+P LT RL P+R+++D D++I++
Sbjct: 182 HIHTLRDQIDAVIVGIGTVRRDNPRLTTRLPE-GGRDPIRVVVDGLGPFPDDAQILQAEA 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ + D P + ++ + + L+ LL L R VTS+++EGG
Sbjct: 241 ASRTWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLEHLLKRLGEREVTSVMIEGGE 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ S I +VD +L+ + I++G PS + +R + G DV
Sbjct: 301 GIFTSAIEEGIVDKFLLFVAPILLGGKTAPSLFGGTGIDNIGQALRLARLRIEQLGEDVL 360
Query: 352 LEYIG 356
+E
Sbjct: 361 IEGYR 365
>gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 378
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAG
Sbjct: 7 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + ++ R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 SVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 TPFFQAGSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + + G+D
Sbjct: 307 AGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 381
Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAG
Sbjct: 10 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAG 69
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI
Sbjct: 70 ELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGI 129
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + ++ R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 130 SVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 189
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 190 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLD 249
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 250 TPFFQAGSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVE 309
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + + G+D
Sbjct: 310 AGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGNDW 369
Query: 351 CLEYIG 356
+ +
Sbjct: 370 RVIALP 375
>gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 378
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 179/366 (48%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAG
Sbjct: 7 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + ++ R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 SVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 TPFFQAGSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + + G+D
Sbjct: 307 AGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
Length = 363
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 186/360 (51%), Gaps = 8/360 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +MS ALR + + TS NP V C+IV G V+G G G PHAE+ AL +
Sbjct: 2 FTALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRK 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+GAT YVTLEPCSH+GR+PPC + +I+ G+ +VV+ ++DP+ V+G+G +WL +
Sbjct: 62 AGDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + + ++ L+ ++TR R + KIA S D + S IT ++
Sbjct: 122 GIAIQAGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARR 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H RA+S AIL GI +V DDP+LT R PMRI++D + + L +K+++ A
Sbjct: 182 DGHKWRARSCAILTGISSVRKDDPQLTVRYIT-VSRQPMRIVVDSNLETPLQAKLLQNAD 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + + + L +I ++ DLK ++ L G+ LLVE G +
Sbjct: 241 TTWIFTAQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPVLN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD II Y + ++G + + + + G DV L
Sbjct: 301 GALVTAGLVDEIIFYFAPSLLGNSAQAMLALPEIGDLSEKYDLQISDIRKIGMDVRLIAR 360
>gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Bacillus coahuilensis m4-4]
Length = 377
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 9/365 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + +M+ A++ ++ G TS NP V +IV+DG ++G G G PHAE+ AL
Sbjct: 1 MNNNQSHEFYMNMAIQNAKVMSGQTSPNPLVGAVIVRDGEIVGFGAHMKAGEPHAEIHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG++A+GAT YVTLEPCSHYGR+ PCA +IE GI VVV DP+ V+G G++ L
Sbjct: 61 RMAGDKAKGATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILE 120
Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +ME+E K + V R ITLK A S D I S IT +
Sbjct: 121 DAGIKVITGVMEAEAKRMNEVFNHFIVTGRPFITLKTASSLDGKIATHTHNSKWITCEGA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +R DAILVG T+L D+P LT RL +P+RII+D K+ L+SK++
Sbjct: 181 REDVHKMRNVYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIIDSALKIPLNSKVLTD 240
Query: 240 ALLAPVIIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
I ++ + + + I +L ++ L V+SL++EGG
Sbjct: 241 KEAPTWIFTSKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYLGKMNVSSLIIEGGG 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ SF+ +LV ++Y + +IG P+ LE + + + G D
Sbjct: 301 TINSSFVEEKLVQKAVIYFAPKLIGGKEAPTFLEGKGVAIVSQAIDLENMTITSLGKDFK 360
Query: 352 LEYIG 356
+E
Sbjct: 361 IEGYP 365
>gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1]
gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. W3-18-1]
Length = 384
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 181/372 (48%), Gaps = 16/372 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL
Sbjct: 6 TWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 66 MAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
L + + ++ A + ++ + + G+
Sbjct: 246 PLSAACLAIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQSCNH 305
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDY 345
+LVE GA +A +F+ L D ++LY++ ++G G Y V
Sbjct: 306 VLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDERK 365
Query: 346 FGSDVCLEYIGK 357
G D L K
Sbjct: 366 IGPDTRLTLSVK 377
>gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase, RibD [Shewanella putrefaciens 200]
Length = 384
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 181/372 (48%), Gaps = 16/372 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL
Sbjct: 6 TWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 66 MAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289
L + + ++ A + ++ + + G+
Sbjct: 246 PLSAACLAIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQSCNH 305
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDY 345
+LVE GA +A +F+ L D ++LY++ ++G G Y V
Sbjct: 306 VLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDERK 365
Query: 346 FGSDVCLEYIGK 357
G D L K
Sbjct: 366 LGPDTRLTLSVK 377
>gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
SBW25]
gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Pseudomonas fluorescens SBW25]
Length = 369
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 180/365 (49%), Gaps = 17/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL AG+
Sbjct: 2 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI
Sbjct: 62 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGID 121
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ESE + +L R + + +K+A+S D MA S ITG ++ V
Sbjct: 122 VRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLDS 234
LRA++ +L G TVLAD LT R P+R+++D ++ L++
Sbjct: 182 RLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNA 241
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
P +++T + + DL+ L L RGV +LVE
Sbjct: 242 PF---FKAGPALVITCVTAENQFPRGPECLVVPGVEGQVDLRSALVALAARGVNDVLVEA 298
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
G ++A +F LVD +++ + +G P PL++ G D
Sbjct: 299 GPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLDKLADAPQLKITEMRAVGDDWR 358
Query: 352 LEYIG 356
+ I
Sbjct: 359 VTAIP 363
>gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
11109]
gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM
11109]
Length = 362
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 11/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ + VG TS NP V ++V+DG ++GRG G PHAEV+AL +AG +A GA
Sbjct: 1 MALALKLAARGVGCTSPNPMVGAVVVRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
T YVTLEPC+HYG++PPC + I+ GIRRVV+ DP+ V+G G +L KG++V
Sbjct: 61 TLYVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLVQSGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ G A+ + + K A S D I S ITG ++ VH LR Q
Sbjct: 121 LAKAGSRLNEAFFKAMTIGQPFVIAKAAASLDGKIATRTNDSQWITGAPARTWVHRLRHQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAILVG+GTV+ADDP+LT RL Q P+R++LD +L L++K++ AP +V
Sbjct: 181 VDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLRLPLNAKVLTQISAAPTWMVC 240
Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
P + ++ I + +L+ LL IL R + SLLVEGGA V +F +
Sbjct: 241 TPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGERRIQSLLVEGGAEVQGAFFD 300
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCL 352
+ LVD L+ + IG P L + + G D+ +
Sbjct: 301 AGLVDKFHLFLAPKFIGGRQAPGILGGLGASRLAEAQLAHDLSIRRIGEDILI 353
>gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum EA
2018]
Length = 365
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 182/358 (50%), Gaps = 11/358 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ FM AL + G + NP V +IVKD ++G G G HAEV AL AG+
Sbjct: 1 MNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + GI
Sbjct: 61 DAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIE 120
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +M+ E + ++ KR IT+K+A + D I S I+G S+ VH
Sbjct: 121 VITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T
Sbjct: 181 HLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERK 240
Query: 245 VI-----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+I +N + L +L LL L G+ S+L+EGG+ +
Sbjct: 241 IIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
SFI +D I+ + + +++G + +EK + + G D+ +
Sbjct: 301 FSFIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 358
>gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium
botulinum H04402 065]
Length = 365
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 183/361 (50%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE A+
Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGERAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGIGT++ D+P L R+ + + I+D ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIERGRSPKAI--IVDSSLRIPLESKILETLNERTIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T + +N L +L+ L GV S+L+EGG+ +
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum ATCC
824]
gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Clostridium acetobutylicum ATCC
824]
Length = 383
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 113/356 (31%), Positives = 181/356 (50%), Gaps = 11/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL + G + NP V +IVKD ++G G G HAEV AL AG++A
Sbjct: 21 EAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGKDA 80
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + GI V
Sbjct: 81 EGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIEVI 140
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+M+ E + ++ KR IT+K+A + D I S I+G S+ VH L
Sbjct: 141 TGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVHHL 200
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T +I
Sbjct: 201 RSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKII 260
Query: 247 -----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+N + L +L LL L G+ S+L+EGG+ + S
Sbjct: 261 IATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFS 320
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
FI +D I+ + + +++G + +EK + + G D+ +
Sbjct: 321 FIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 376
>gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM573]
gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM573]
Length = 367
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQ-YAETDLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A ++ I + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENADLCISAENGKLDLRELLAQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755]
Length = 363
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 180/360 (50%), Gaps = 12/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ FM+ A+ + G T+ NP V C+IVKDG ++ G G HAE +A+ E+
Sbjct: 3 HSIFMARAIELAELGRGWTNPNPLVGCVIVKDGNIVAEGYHQRYGEWHAERKAILHCQED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GATAYVTLEPC H+GR+PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI V
Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + KR ++ +K A++ D I A + ITG ++ V
Sbjct: 123 IENVMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQC 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R Q AI+VG+ TVLAD+P L R+ P+RI+ D + L+ ++++TA
Sbjct: 183 TRHQYSAIMVGVDTVLADNPMLNSRMPN--AKQPVRIVCDSRLRTPLECQLVQTAKTYRT 240
Query: 246 IIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
II T +DD F+ + DL LL L +G+ SLL+EGG+++ S
Sbjct: 241 IIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+N+ +V+ + Y + ++G +P+ + + G D+ ++Y
Sbjct: 301 ALNAGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDYEV 360
>gi|153834818|ref|ZP_01987485.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
gi|148868746|gb|EDL67820.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
Length = 374
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 170/364 (46%), Gaps = 8/364 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D MS AL ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+
Sbjct: 9 EFTSQDFEMMSRALMLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++ +GATAYVTLEPCSHYGR+PPCA+ +IE + RVV ++DP+ +V+GRG Q L
Sbjct: 69 MAGDKTQGATAYVTLEPCSHYGRTPPCAEGLIEAKVARVVCAMEDPNPKVAGRGFQMLRD 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ +I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA S IL TV+ D+ L R L + + + + +
Sbjct: 189 QDVQRYRALSGGILSTSKTVIDDNASLNVRWEDLPKSVQTQYP-QEDVRQPPRVIFDRQS 247
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298
L+ + + D + ++ + + + L + + L VE GA +
Sbjct: 248 QLSDDLKLFNTDGERIIVSQGGDMAPELDENGQIDLAATLRNVASEYHINHLWVEAGATL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 308 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRMVGVDIRITA 367
Query: 355 IGKN 358
K
Sbjct: 368 TVKR 371
>gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437]
Length = 368
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 187/368 (50%), Gaps = 11/368 (2%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M ++ + D R+M ALR + G TS NP V ++VKDG ++G G G PHAEV A
Sbjct: 1 MSMNLTEDERWMELALRLAEAARGQTSPNPLVGAVVVKDGQLLGSGAHLKAGTPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
LE+AG+ A+G+T YVTLEPC+HYGR+PPC + I G+RRVVV DPD VSG+G+Q L
Sbjct: 61 LEQAGKSAKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ G+ V + ++ L+ +TLK AV+ D + S +TG
Sbjct: 121 REAGLSVKTGVLADRCTRLNEAYFHHRRTGFPFVTLKAAVTLDGKTATSDGDSRWVTGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ +VH LR Q DA+LVG GT L D P+LT R +P+R+++D ++ L+S +
Sbjct: 181 AREEVHRLRHQYDAVLVGSGTALHDRPQLTVR-LPGGGKNPLRVVVDSRLRMPLNSPLAD 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGG 295
+ + T+ D A + + + KL L G+ S+L E G
Sbjct: 240 VESASTWVFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVFRRLGREGIVSVLTESG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV 350
+ S + V+ ++ + + ++G + + +++ V D FG D+
Sbjct: 300 GELNASLLREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQMKDALLLEDVSVDLFGRDI 359
Query: 351 CLEYIGKN 358
C+ I +
Sbjct: 360 CVTGIPRK 367
>gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
12067]
gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT
12067]
Length = 388
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 190/369 (51%), Gaps = 13/369 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M AL + G TS NP V C+IV +G ++G G G PHAEV AL EA +
Sbjct: 17 DEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNALAEAKQ 76
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GATAYVTLEPC+HYGR+ PC + GI +VVV DP+ +V+G+GL++L +GI
Sbjct: 77 MAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLRLQGIE 136
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + T ++R ITLK A++ D I A S ITG ++ H
Sbjct: 137 VVTGVCEKEAKRLNERFFTWITKQRPFITLKYAMTLDGKIATATGDSKWITGEEARTFAH 196
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR Q DA+LVGIGTVL DDPELT R ++ +P+R++LD K+SL + ++
Sbjct: 197 RLRKQHDAVLVGIGTVLEDDPELTTR--LVRGKNPVRVVLDSSLKISLMAAVLNPLADTI 254
Query: 245 VIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ ++D L + + + +++ L RG+ SLLVEGG+A+
Sbjct: 255 IFTGLDSDIVKAEALAALPNVEVVRLPLADGVLPVAQVVQALAERGIASLLVEGGSAIHG 314
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
+ ++ L D + + + +IG P+ V + GSDV + +
Sbjct: 315 ALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGSSLVETGWQLTEVEMEKLGSDVLITGL 374
Query: 356 GKNLCLQEL 364
L QEL
Sbjct: 375 VPELDKQEL 383
>gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
Length = 384
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 192/369 (52%), Gaps = 16/369 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ A++ ++ T NP V C++VKD +IG+G G HAEV AL +A +
Sbjct: 6 HEYWMAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAKHD 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPCSH G++PPCA +I+ G+ RVV + DP+ VSG GL + + GI +
Sbjct: 66 AVGATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEI 125
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ES+ + ++ R E ++ +K+A+S D M S IT ++ V
Sbjct: 126 IGPILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIK 238
LRAQSDAI+ GIG+VLAD+P +T R++ + P+R+++D + ++KI+
Sbjct: 186 LRAQSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILY 245
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVE 293
A A V V E + KK + + + + +L + L G+ +L+E
Sbjct: 246 PANQAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLE 305
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
GA +A F+ + L+D II+Y + ++G P PL+ + G DV
Sbjct: 306 AGAELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDVMDEAVDLTLKSVRQVGQDV 365
Query: 351 CLEYIGKNL 359
L YI K L
Sbjct: 366 RLVYIPKYL 374
>gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
flueggei ATCC 43531]
gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas
flueggei ATCC 43531]
Length = 386
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 138/359 (38%), Positives = 195/359 (54%), Gaps = 8/359 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL
Sbjct: 20 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 79
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L
Sbjct: 80 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 139
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V + +E + A+LT KR +TLK A++ D I S ITG ++
Sbjct: 140 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 199
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++
Sbjct: 200 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 259
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
VI V+E D R ++ + +L ++L L R TSLLVEGGAAV
Sbjct: 260 APTVIAVSERADQRRVDRLRACGAEVVTLGAERVELPRVLDWLGARDCTSLLVEGGAAVN 319
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
SF+ VD I + + +++G G P+P+ + + + G+D+ +
Sbjct: 320 WSFLAGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLYDMHVEQVGADLLVT 378
>gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. BAV1]
gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1]
gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. BAV1]
Length = 365
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 127/364 (34%), Positives = 180/364 (49%), Gaps = 14/364 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+
Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V
Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
MME E + AY +T K A+S D G S I+ S++ H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLA 243
SD I+ G+ T+L DDP LT R+N + P R+I+D + + L S +
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGNT 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
V + + D R DLK LL L GVTS+LVEGG V
Sbjct: 242 IVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVLG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-Y 354
S + +LVD ++++ + I+IG P+ E F + FG DV + Y
Sbjct: 302 SLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLISGY 361
Query: 355 IGKN 358
+ K
Sbjct: 362 VIKE 365
>gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM603]
gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM603]
Length = 367
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 116/366 (31%), Positives = 180/366 (49%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ IL TVLAD+ L R + L + + + + + +
Sbjct: 181 ARKDVQRFRAQASTILSTSQTVLADNASLAVRWHDLPQSVQAQ-YAETDLRQPFRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGA 296
L P + + + VL +A ++ I + + L + V + VE G
Sbjct: 240 QHQLHPELALYQTSSSVLRVASENADLCISAENGKLDLHELLAQLAQQHNVNQVWVEAGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|71898908|ref|ZP_00681075.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Ann-1]
gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Ann-1]
Length = 364
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 9/361 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV AL
Sbjct: 4 FSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L
Sbjct: 64 AGDLARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ ME++ + +L+R R + +K+ S D +A S ITG ++
Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARV 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V RA++ AIL G GTVLADDP LT R P+R++LD + S +
Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRS--LSCVKVR 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
AP + + L + DL+ +L +L RG+ + VE GA +
Sbjct: 242 DGTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ +++ LVD +++Y + +++G+ P + + G+D+ L
Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRLLLR 361
Query: 356 G 356
Sbjct: 362 P 362
>gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
2916]
gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC
2916]
Length = 365
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 185/361 (51%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ ++ G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+
Sbjct: 6 FYMEKALKLAKRGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGIGT++ D+P LT R+ + + I+D ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIERGRSPKAI--IVDSSLRIPLESKILETLNERTIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ +N L +L+ L GV S+L+EGG+ +
Sbjct: 244 AATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
Length = 364
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 178/362 (49%), Gaps = 6/362 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D R M AL + T NP V C+IV+DG V+G G G PHAEV A
Sbjct: 1 MSAFSVDDYRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L
Sbjct: 61 LCAAGDRARGATAYVTLEPCAHLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V+ ME++ + +L+R R + +K+ S D +A S ITG
Sbjct: 121 RAAGVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RA++ AIL G GTVLADDP LT RL G + + + +L S +
Sbjct: 181 ARADVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKV 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
AP + + L + DL+ +L +L RG+ + VE GA +
Sbjct: 241 RDGTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ +++ LVD +++Y + +++G+ P + + G+D+ L
Sbjct: 301 CGALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVVQVGNDLRLLL 360
Query: 355 IG 356
Sbjct: 361 RP 362
>gi|308048548|ref|YP_003912114.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ferrimonas balearica DSM 9799]
gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ferrimonas balearica DSM 9799]
Length = 373
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 119/372 (31%), Positives = 186/372 (50%), Gaps = 18/372 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ DAR M+ AL +R T NP V C++V+DG V+G G G PHAEV AL
Sbjct: 2 FSTDDARHMARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++ARGATAYVTLEPCSHYGR+PPC+Q +I+ G+ RVV + DP+ +V+GRGL L
Sbjct: 62 AGDKARGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + + ++ +++ R + +K+A S D +A S ITG ++
Sbjct: 122 GIETQHGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA SDA++ G +VLAD+P + R L I + + L + A
Sbjct: 182 DVQRLRAISDAVITGADSVLADNPSMNVRHAELGHWQS--RISEADLQQPLRVVVDGKAR 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----------KKLLTILVGRGVTSL 290
LAP + + ++D P++ + R + + LL L + + +
Sbjct: 240 LAPPLKLLDSDGPLMLASLRGYDCHWPASVSVWPAADNGEGKVALTALLDELGRQQINEV 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
LVE G+A+A +FI++ L D + LY++ ++G ++ +
Sbjct: 300 LVEAGSALAGAFISAGLWDELWLYQAPKLMGSEARGLLALPGVDTMAEVPSLTIQDVRRV 359
Query: 347 GSDVCLEYIGKN 358
G+D+ L +
Sbjct: 360 GADLRLILTRQE 371
>gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 378
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 125/366 (34%), Positives = 180/366 (49%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAG
Sbjct: 7 ALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + ++ R R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 SVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V + + DL++L+ L RGV +LVE
Sbjct: 247 TPFFQAGSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G +A +F LVD L+ + +G P PL + + G+D
Sbjct: 307 AGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARPLLDLPLAQMSEALELNIIEIRAVGNDW 366
Query: 351 CLEYIG 356
+ +
Sbjct: 367 RVIALP 372
>gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT]
Length = 365
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 127/364 (34%), Positives = 180/364 (49%), Gaps = 14/364 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+
Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V
Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEAAGIKVHL 121
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
MME E + AY +T K A+S D G S I+ S++ H +R
Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLA 243
SD I+ G+ T+L DDP LT R+N + P R+I+D + + L S +
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGNT 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
V + + D R DLK LL L GVTS+LVEGG V
Sbjct: 242 IVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVLG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-Y 354
S + +LVD ++++ + I+IG P+ E F + FG DV + Y
Sbjct: 302 SLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLISGY 361
Query: 355 IGKN 358
+ K
Sbjct: 362 VIKE 365
>gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophobotulus glycolicus DSM 8271]
gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophobotulus glycolicus DSM 8271]
Length = 398
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 174/365 (47%), Gaps = 12/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D +M AL + G TS NP V CLIVKDG++IG G G PHAEV AL
Sbjct: 35 FSDQDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKDGLIIGEGYHQKAGTPHAEVHALTA 94
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A GA YVTLEPCSH+GR+PPC +I+ G++RV V + DP+ V G+G+Q +
Sbjct: 95 AGKRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAA 154
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L+ + ++ L K A + D S IT +S+
Sbjct: 155 GIEVFTGLLENEAAKLNEPFVKAMKTNLPFVLYKSASTADGKTASCTGDSRWITNDLSRK 214
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LR D I+VG T+L D+P+LTCR+ G P+R+I+D + +++++ +
Sbjct: 215 YVHELRNSYDVIMVGSKTILQDNPQLTCRIAG--GRHPVRLIVDGTLSIPEEARLLSLSE 272
Query: 242 LAPVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ +I T P + LK L+ ++ +G S+L+EGG
Sbjct: 273 GSTIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKTLMQDILEKGYQSVLLEGGG 332
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A I +LVD + L+ + +IG+ + + F D+ L
Sbjct: 333 TLAGQMIAEKLVDKVNLFIAPKIIGQSSFSPISGFCINSMADAVMIREMEMKEFAGDILL 392
Query: 353 EYIGK 357
K
Sbjct: 393 SGYLK 397
>gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334]
Length = 366
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 117/367 (31%), Positives = 182/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A++ D I S ITG ++ VH
Sbjct: 123 TVGVLENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNHSKWITGEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR Q AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHQVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SLL+EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYKNHGCEILSIKKKGNHIDLSDLMQHLGNMQIDSLLLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGDDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068]
Length = 373
Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats.
Identities = 120/360 (33%), Positives = 185/360 (51%), Gaps = 14/360 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D FM A+ + +GL NP V C+IV G V+GRG G PHAEV+AL++A
Sbjct: 10 ASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQQA 69
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+ARG+T YVTLEPCSH+G++PPCA +I G+ RVV + DP +V G G L G
Sbjct: 70 GEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRSAG 129
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V+ + L A + K A++ D I S I+ S+
Sbjct: 130 IAVESGVCEAEARALCAPYLKLVTRGMPWVIAKWAMTLDGKIATRSGYSQWISCSQSREL 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH +R + D I+VG TV DDP LT R + +P RI+LD +L +++++TA
Sbjct: 190 VHGIRGRVDGIMVGRRTVELDDPLLTAR--PPGKRTPARIVLDSQARLQNSTQLVRTARQ 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAA 297
+PV++VT + + + L +LL+ L R +T++LVEGGA
Sbjct: 248 SPVLVVTGPEADDKEIRRLSMAGCEVLPFLAATHFERLLELLSELGRRQMTNILVEGGAK 307
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ S +++RLVD + ++ + + G P P+ +E+ ++ D G+D+ +
Sbjct: 308 LLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGVEQVASALELRNLKIDQIGTDLYV 367
>gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
Length = 366
Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 184/365 (50%), Gaps = 20/365 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A
Sbjct: 13 KYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQAGENA 72
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+ ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+
Sbjct: 73 KDATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVE 132
Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ +E L+ +L ++ LK+A S D MA S ITG I++ V
Sbjct: 133 TGVCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHW 192
Query: 187 RAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
RA S A++ GI TVLADD EL R N P RIILD +L L +KI++
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKILQNPET 252
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V+ + L I + L T+ + +LVE GA ++ +F
Sbjct: 253 VMVMTPFRQELADL--------GVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTAF 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ LVD +I Y + ++G+ + ++ F V G D+ L +
Sbjct: 305 LQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP--- 361
Query: 360 CLQEL 364
+QE+
Sbjct: 362 -IQEM 365
>gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
Length = 367
Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 181/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + + L + V L VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAEHGKLDLRELLAQLAQQHNVNQLWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus VM223]
gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus VM223]
Length = 367
Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQ-YAETDLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A ++ I + + L + V + VE G+
Sbjct: 240 QHQLHPELSLYQTPSPVLRVASENADLCISAENGKLDLRELLAQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRV 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4]
Length = 360
Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats.
Identities = 131/358 (36%), Positives = 179/358 (50%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AGE+
Sbjct: 3 DIDYMKLALTLAEQTRGQTSPNPMVGSVVVKDGAIVGMGAHLKAGEGHAEVNALKMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPCSHYG++PPCA IIE ++RVVV DP+ VSGRG++ L GI V
Sbjct: 63 AEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGITV 122
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + I + KR +T+K A + D S ITG ++ VH
Sbjct: 123 DVGVCEAEAIELNRMFFHFIQTKRPFVTMKTASTLDGKTATVTGESKWITGEEARLDVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAILVGIGTVL+D+P LT R +P+RIILD H +L S++
Sbjct: 183 DRHIHDAILVGIGTVLSDNPALTTR-LPNGGRNPIRIILDRHLRLPESSQVACDQAAKTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ TE+ A R +++I + +L L R V +L VEGG V SFI
Sbjct: 242 VFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKELGKRRVMTLYVEGGQEVNGSFIKE 301
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKN 358
R V+ +I Y + +IG P+ + + + G D+ + + K
Sbjct: 302 RAVNQVITYVAPKMIGGKNAPTSVGGEGIPSINQALELQVIDVVQVGQDIKITSLVKE 359
>gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13]
Length = 367
Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 181/362 (50%), Gaps = 11/362 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
D +M A+ ++ G TS NP V ++VK+G ++G G G HAEV A++ AG
Sbjct: 2 DDQYYMKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMAGV 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++A G+T YVTLEPCSH+G++PPC+ +I+ + RVV+ DP+ V+GRG++ L + GI
Sbjct: 62 DKANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E + L+ ++ + +TLK A S D S ITG S+ V
Sbjct: 122 EVELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R Q DAILVG+GTVLADDP L R +P+RIILD H + LDSK++
Sbjct: 182 HQYRHQHDAILVGVGTVLADDPSLDTR-LPNGGKNPIRIILDSHLRTPLDSKVLTDGKAP 240
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAH 300
I+ D + ++ + ++ ++L +TSL VEGGA V
Sbjct: 241 TWIVTGSKPDLEKMAFLEGQEGVRVFTLPMEKVEVNELLSLLGEEEITSLFVEGGATVNG 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
SF+ + + +I Y + +IG P+ + F G D+ +
Sbjct: 301 SFLKEKAIQQLITYIAPKLIGGKAAPTLVGGEGFATMDEVMEFEIKEVTKIGPDLKIVSS 360
Query: 356 GK 357
K
Sbjct: 361 PK 362
>gi|262395034|ref|YP_003286888.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. Ex25]
gi|262338628|gb|ACY52423.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. Ex25]
Length = 375
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 106/363 (29%), Positives = 171/363 (47%), Gaps = 8/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D MS A++ +R + T+ NP+V C+IV+D ++G G G PHAEV A+
Sbjct: 10 FSDLDFAMMSRAIKLARRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L
Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + + L+ + + + LK+A S D ++ S IT +++
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPVARQ 189
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA S IL TV+ D+ L R + L + + + + + + +
Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLRE-ELRQPVRVILDRQNH 248
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVA 299
L + + D + ++ I ++ + L I + L VE GA +A
Sbjct: 249 LTDALKLFHTDGERVIVSPDGDCIPLLDSADQIDLSTTLKRISDEHHINHLWVEAGATLA 308
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + LVD +I+Y + ++G G L + G D+ +
Sbjct: 309 SAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRMVGVDIRITAT 368
Query: 356 GKN 358
K
Sbjct: 369 IKR 371
>gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
Length = 370
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 113/370 (30%), Positives = 182/370 (49%), Gaps = 18/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D +MS AL+ + TS NP+V C+IV DG ++G G G PHAEV AL
Sbjct: 2 FSAEDHLYMSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRM 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV ++DP+ +VSGRG++ L+
Sbjct: 62 AGDKARGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ + + L+ ++ R ++ LK+A S D +A S IT ++
Sbjct: 122 GVTIQTGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG-----------LQEHSPMRIILDPHFKL 230
V RAQS AIL G TVL DDP L R P+RII+D ++
Sbjct: 182 DVQRWRAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRI 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + ++ + + + ++ + + DL +L+ L R + +
Sbjct: 242 VPSAHLF--SIPGEIWLARHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA++A + +++ LVD +++Y + ++G + +
Sbjct: 300 WVEAGASLAGALMSAGLVDELMVYLAPKLMGNPARGLVNLPEFKHMSEVNEWQWQDVRKV 359
Query: 347 GSDVCLEYIG 356
G+D+ L
Sbjct: 360 GNDLRLTLRP 369
>gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
Length = 387
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 120/355 (33%), Positives = 176/355 (49%), Gaps = 10/355 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL + +G TS NP+V ++VK G +I RG G HAEV ALE AG A
Sbjct: 29 EFFMRIALEEAAKGLGRTSPNPAVGAVLVKGGRIIARGYHKKAGTAHAEVVALEAAGPRA 88
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGA Y TLEPC HYGR+ PC+Q II+ G+RRV+ DP+ +V+G+G+ L + G+ V
Sbjct: 89 RGADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLKKAGVEVL 148
Query: 128 RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + L+ + + ++TLK AV+ D + A S +TG +++ VH L
Sbjct: 149 TGVLQKDADQLNQPFFKVMTTGLPYVTLKAAVTLDGKLATATGDSRWVTGEAARHWVHQL 208
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + D ILVG TV D+P+LT RL G P+R+++D H +L + A VI
Sbjct: 209 RDKVDVILVGANTVRRDNPQLTTRLPGGGGKDPVRVVVDSHLRLKSTHTVFTQRSPARVI 268
Query: 247 IVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ T D + LK LL + G +LVEGGA + S
Sbjct: 269 LATLEDPQGAKARRFTRLGVEVWQMPSRQGQVALKALLGRVAQEGFNHVLVEGGAEIYGS 328
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
F+ RL DS+ L+ + +IG G+ ++ + + G D+ L
Sbjct: 329 FLRERLADSLALFLAPKLIGSQGLSWSGDLGVKLMANAFSLKDLTFQQLGEDLLL 383
>gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
Length = 367
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 180/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPLSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A + I + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAKNGKLDLRELLAQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414]
Length = 448
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 181/370 (48%), Gaps = 17/370 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S FD M L +R +G TS NP V ++VKDG ++G G G PHAEV AL+ A
Sbjct: 79 SDFDQAMMQRCLALARRALGRTSPNPLVGAVVVKDGEIVGEGFHPCAGEPHAEVFALKAA 138
Query: 64 G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
G A GAT YV LEPC+H+GR+PPC++ +I G+ +VVV + DP+ V G G
Sbjct: 139 GVGADSTQENRACGATVYVNLEPCNHHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGG 198
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L G+ V +E++ L+ ++ KR LK A++ D I S +
Sbjct: 199 IARLRAAGVEVVVGVEAQACYQLNEAFIHRIVHKRPLGILKYAMTLDGKIATTSGHSAWV 258
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T ++++VH LRA DAI+VG TV D+P LT G H+P+R+++ L D+
Sbjct: 259 TNQDARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVG--AHNPLRVVMSRQLNLPEDA 316
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ TA V+ E P R++ + ++ + ++T L RG S+L E
Sbjct: 317 RLWDTAEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWEC 376
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349
G +A S I V I+ + + +IG +P+ + V GSD
Sbjct: 377 GGTLAASAIAQGAVQKILAFIAPKIIGGSHAATPVGDLGFTIMTEALTLERVSWRVVGSD 436
Query: 350 VCLE-YIGKN 358
+E Y+ +
Sbjct: 437 CLVEGYLPQK 446
>gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
16069]
gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
16069]
Length = 372
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 115/371 (30%), Positives = 187/371 (50%), Gaps = 13/371 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D+ +M+ A++ + T TNP V C++VKD I+IG G G HAE+ AL
Sbjct: 1 MSFTAQDSSYMARAIQLAPRGWFTTRTNPRVGCVLVKDNIIIGEGWHEKPGFAHAEINAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE A+GATAYVTLEPC+H+G++ PCA+ ++E G+ RVV + DP+ V+G+G++ L
Sbjct: 61 NHAGESAKGATAYVTLEPCAHHGKTGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILE 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI + + L+ +++ K + K+ +S D MA S ITG +
Sbjct: 121 KAGIKTEYGLMQAQAETLNPGFIKRMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSK 235
+ V LRA+S AI+ G GTV+ D+P + R P+R+I+D + D+K
Sbjct: 181 RRDVQRLRAESGAIITGSGTVVIDNPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSL 290
I ++ ++ A +K + + DLK LL +L G+ +
Sbjct: 241 IFSHEGHCWLVSGHLSEKGYPANVEQKTVALLPGKDEVSHQKVDLKALLIMLAEAGINDV 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
L+E G+ + +F+ LVD +++Y + ++G P PLE G
Sbjct: 301 LIEAGSGLVGAFVAQELVDELVVYMAPKLMGSAARPMFQLPLETMQQNIELTLNDIRQIG 360
Query: 348 SDVCLEYIGKN 358
+D+ L Y K
Sbjct: 361 NDLRLNYYFKK 371
>gi|256027507|ref|ZP_05441341.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
sp. D11]
gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D11]
gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D11]
Length = 370
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 109/367 (29%), Positives = 189/367 (51%), Gaps = 13/367 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG
Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH G++PPCA+ IIE GI++ VV DP+ V+G+G++ + GI
Sbjct: 64 ENAKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIEDAGI 123
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 124 EVKLGILEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + +++K +
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243
Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I+ + ++ + + +K +L L G+ S+L+EGG+
Sbjct: 244 NDGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLGIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCVRRDY--FGSDVC 351
+ + ++D+ ++ + +IG+ + + F + +G ++
Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNFDNMEDVFKLPNSKFNIYGDNIS 363
Query: 352 LEYIGKN 358
+E+
Sbjct: 364 IEFEKNK 370
>gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 368
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 178/365 (48%), Gaps = 15/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
D FMS A+ ++ +G T TNP V C+IV++ +IG G G HAEV A+ +A
Sbjct: 5 DDRYFMSRAIELAKNGIGATKTNPLVGCVIVRNEKIIGEGYHKVFGSCHAEVNAINDAKA 64
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GE GAT YV LEPCSHYG++PPCA IIE I RVV+ DP +VSGRG++ L
Sbjct: 65 KGENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKNA 124
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + E + Y T R + LK ++ D I S IT S+
Sbjct: 125 GIEVEVGVLKEECEKLNERYFTYIKNNRPFVVLKSGMTIDGKIATKTYESQWITSEESRK 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR D I+VGI TVL DDP L R G HSP RII+D ++ +K++ L
Sbjct: 185 FSHELRGMCDGIMVGINTVLKDDPTLNVR-AGRYPHSPARIIVDSKLRIFPSAKVLSKDL 243
Query: 242 LAPVIIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGG 295
II T + K N+ DL+ L+ L ++S+L+EGG
Sbjct: 244 ENIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMVDLRDLMEKLKTFNISSILLEGG 303
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
++ S + +LVD + + +IG G+ + +E+ + V +D+
Sbjct: 304 GSLNASMLREKLVDKFYFFIAPKIIGSDGVSAIGSMGIEKLDEAIDIKDVEVIKIATDIF 363
Query: 352 LEYIG 356
++
Sbjct: 364 IKGRV 368
>gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275]
Length = 384
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 179/364 (49%), Gaps = 11/364 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++M AL ++ VG + NP V +IVK+G +IG G G HAE AL E +
Sbjct: 23 KYMQLALENAKKGVGFVNPNPMVGAVIVKNGKIIGEGYHKKYGGLHAERNALNNCSENPK 82
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YVTLEPC HYG++PPC IIE I++VV+ DP+ ++SG+ L L ++GI V++
Sbjct: 83 DATMYVTLEPCCHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGIKVEK 142
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L+ + + + L K A++ D I S ITG ++ V R
Sbjct: 143 GLLENEGDKLNETFRKFITTKKPFVLFKYAMTMDGKIATKINESKWITGEEARLNVQKTR 202
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ I+VG+ TV+ D+P L C++ +P+RII D + + + SKI+ TA P II
Sbjct: 203 HKYSGIMVGVDTVIIDNPMLNCKIEN--GLNPIRIICDTNLRTPIGSKIVSTAKEIPTII 260
Query: 248 VTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
T +DD + + + I DL+ L++ L + + S+L+EGGA +A S
Sbjct: 261 ATCSDDEIKKEQYIEKGCEILQIKIKKKKIDLQDLMSKLGEKKIDSILLEGGATLAWSAF 320
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+VD I Y + + G G + L EG FG D +E
Sbjct: 321 ERGIVDKIQAYIAPKIFGGNGKTAVLGEGIDFPKDAIMLKNSEIFRFGDDFMIESDVTYK 380
Query: 360 CLQE 363
C QE
Sbjct: 381 CSQE 384
>gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
WAL-14163]
gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum
WAL-14163]
Length = 370
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 113/357 (31%), Positives = 177/357 (49%), Gaps = 11/357 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E
Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GA YVTLEPC H G+ PPC + I++ I RVVV DP+ V G+G++ L + G+ V
Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGVSV 123
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + + +K A++ D I S ITG +++ V
Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + AI+ G+GTV++DDP LTCR +P+RII D + ++++ TA AP
Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCRGVR-GGKNPVRIICDTRLRTPPAARVVATAGQAPT 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
+I T DDP + ++K +++ ++ +L+ L +G+ S+L+EGG + +
Sbjct: 243 VIATCCDDPERHMVYQKAGCSVLTVREKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ S +V Y + ++G +P+E R G D +E
Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359
>gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
DSM 17678]
gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis
DSM 17678]
Length = 372
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 131/374 (35%), Positives = 194/374 (51%), Gaps = 18/374 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
+ ++MS A+ ++ G T+ NP V +IVKDG V+G+G + GC HAE +AL++
Sbjct: 1 MEEKYMSMAIELAKKACGYTNPNPMVGAVIVKDGQVLGKGYHTWCGCLHAEREALKDCQS 60
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G GAT YVTLEPC HYG++PPC + IIE GI +VVV DP+ +V+G+G+Q L
Sbjct: 61 RGVTVTGATMYVTLEPCCHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDH 120
Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI +V +ME E ++ K+ + +K A++ D I S ITG ++
Sbjct: 121 GINVVTGVMEKECDDLNEVFMHYIKNKKPFVVMKYAMTADGKIATRTGKSQWITGPEARG 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QVH R + I+VGIGTVLADDP L CR SP RII D ++ +DS I++TA
Sbjct: 181 QVHKDRHRYAGIMVGIGTVLADDPTLNCR--LEDGLSPTRIICDTSLRIPMDSNIVRTAK 238
Query: 242 LAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
II T + D A + + D DL L+ + G+ S+L+EGG
Sbjct: 239 TYDTIIATRSKDNEKIRKLKEASCQILVQDGQADRIDLVDLMDKVGSMGLDSVLLEGGGQ 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ S + + +V+ + +Y + G SP+ + K + FG D+ +
Sbjct: 299 LNWSALEAGIVNKVQVYIGNKIFGGNDAKSPVGGYGVDLPDQAKRLKLTGLEKFGPDLLI 358
Query: 353 EYIGKN---LCLQE 363
EY +N C QE
Sbjct: 359 EYRVENEVVECSQE 372
>gi|163803478|ref|ZP_02197350.1| hypothetical protein 1103602000439_AND4_19771 [Vibrio sp. AND4]
gi|159172738|gb|EDP57587.1| hypothetical protein AND4_19771 [Vibrio sp. AND4]
Length = 375
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 109/367 (29%), Positives = 172/367 (46%), Gaps = 8/367 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+
Sbjct: 10 TFTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 69
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV +DP+ +V+GRG Q L
Sbjct: 70 MAGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCATEDPNPKVAGRGFQMLRD 129
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ +I LK+A S D ++ S IT ++
Sbjct: 130 AGVDVQVGLLQSEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKAR 189
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA S IL TVLAD+ L R + L + + L + + +
Sbjct: 190 QDVQRYRALSGGILSSSKTVLADNASLNVRWDDLPKSVQTQ-YLKQDVRQPSRVIFDRQS 248
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298
L+ + + D + + + + + L + + L VE GA +
Sbjct: 249 QLSDDLKLFNTDGERIIVRQGGDICPELDENGQIDLAATLKVVASECHINHLWVEAGATL 308
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S I + LVD +I+Y + ++G G L E + G D+ +
Sbjct: 309 ASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRMVGVDIRITA 368
Query: 355 IGKNLCL 361
K
Sbjct: 369 TVKRNLS 375
>gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
Length = 367
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 180/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A + I + + L + V L VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQKHNVNQLWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106]
Length = 368
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 9/358 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA 63
FD + M L +R +G T+ NP V ++V+D +IG G G PHAEV AL +A
Sbjct: 12 EFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDA 71
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+A+GAT YV LEPC+HYGR+PPC + +I+ + +VVV + DP+ V+G+G++ L Q G
Sbjct: 72 GEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAG 131
Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +E E L+ ++ + K A++ D I S IT ++ Q
Sbjct: 132 IEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQQ 191
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR DA++VG TV D+P LT G E +P+R+++ L L + +
Sbjct: 192 VHQLRVACDAVIVGGNTVRRDNPHLTTHNQG--EPNPLRVVMSRKLDLPLQANLWDITEA 249
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ T++ DP +KK + ++ K ++ L R S+L E G +A
Sbjct: 250 NTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYERQFLSVLWECGGTLAAQA 309
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
I + I+ + + +IG SP+ + L + V GSD +E
Sbjct: 310 IAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLKRVTLHSIGSDYLIEGY 367
>gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus MB-451]
gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus MB-451]
Length = 367
Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 118/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSGQAQ-YAETDLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A ++ I + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENADLCISAENGKLDLHELLAQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305]
Length = 355
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 111/356 (31%), Positives = 176/356 (49%), Gaps = 12/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+ + + RGA
Sbjct: 1 MARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILNSNADLRGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L GI V
Sbjct: 61 TAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEVVTDF 120
Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + KR ++ LK A++ D I + S ITG +++ +V R Q
Sbjct: 121 MREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSSGESKWITGELARAKVQETRHQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VGI TVLAD+P L R+ P+RI+ D + LD ++++TA II T
Sbjct: 181 YSAIMVGIETVLADNPMLNSRMPN--AKQPVRIVCDSSLRTPLDCQLVQTAKEYRTIIAT 238
Query: 250 ENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+DD F+ + + DL+ LL L + SLL+EGG+++ S +
Sbjct: 239 VSDDLQKIAQFQPLGVEILVCKVKDKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSALQV 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+V+ + Y + ++G +P+ + + G D+ ++Y
Sbjct: 299 GIVNRVHCYIAPKLVGGATAKTPIGGEGIGVLSQAVKLTNAQISQIGEDILIDYEV 354
>gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TMA 21]
gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TMA 21]
Length = 367
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 120/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E + + +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEEDARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A + I + + L + V LLVE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQHNVNQLLVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
Langeland]
gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
Langeland]
gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str.
230613]
Length = 365
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 184/361 (50%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+
Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +V +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGI TV+ D+P LT R+ G + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEGGRSPKAI--IVDSNLRIPLESKILETFNKRAIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ +N L +L+ LV GV S+L+EGG+ +
Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
str. F4969]
gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE
str. F4969]
Length = 366
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 118/361 (32%), Positives = 177/361 (49%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI
Sbjct: 61 SIEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + + I + E R I LK A++ D I S T S+ VH
Sbjct: 121 VNVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWTTNKKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-----VGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKININQVLACLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ SF+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDEDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
Length = 365
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 127/361 (35%), Positives = 177/361 (49%), Gaps = 12/361 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D FM ALR + GLT NP+V +IVKDG +IG+G G PHAE +A+ +A
Sbjct: 6 DEIFMKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKK 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G G+T YVTLEPC HYGR+PPC + II+ I+RVV+ DP+ +VSG+G++ L + G
Sbjct: 66 GFNLEGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHG 125
Query: 124 II-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +++ E + + EKR I LKIA S D I S IT S+
Sbjct: 126 IETVVGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRY 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR +S AI+VG TVL D+P LT R E P+R++LD K+ D +
Sbjct: 186 VHKLRRESTAIMVGTNTVLKDNPNLTVRYTE-TERQPLRVVLDKDLKIPEDYNVFNNEAK 244
Query: 243 APVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ I N L + + DL +L L V L +EGG +
Sbjct: 245 TVLFTSDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDLI 304
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
F+ +L D I ++ + +IGE GI S ++ N FG D+ L+
Sbjct: 305 TQFLKEKLFDRISVFIAPKIIGEDGISSFGKLGIDTVDKSINLHLEDIKRFGDDILLQLR 364
Query: 356 G 356
Sbjct: 365 P 365
>gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens
CN-32]
gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella putrefaciens CN-32]
Length = 384
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 132/374 (35%), Positives = 191/374 (51%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL
Sbjct: 6 TWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 66 MAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + A+++P+++V+ P A +++ + + L +G+
Sbjct: 246 PL--SVACLAIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G Y V
Sbjct: 304 NHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDE 363
Query: 344 DYFGSDVCLEYIGK 357
G D L K
Sbjct: 364 RKLGPDTRLTLSVK 377
>gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656]
Length = 394
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 37/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E
Sbjct: 9 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 68
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI V
Sbjct: 69 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 128
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E + +R ++ +K A++ D I S ITG ++ V
Sbjct: 129 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 188
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P
Sbjct: 189 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 246
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----------------------------- 276
I+ A + + + +
Sbjct: 247 IVAVSERYHETAQSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 306
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E +
Sbjct: 307 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 366
Query: 337 NFMCV-----RRDYFGSDVCLE 353
V + G D +E
Sbjct: 367 PAHAVMLGNSKVTKLGDDFLIE 388
>gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 365
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 12/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M A+ ++ +G TS NP V +IVKD +IGRG G HAEV AL+
Sbjct: 4 DIDKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDNQIIGRGWHEKYGEAHAEVNALDNCQ 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
GAT YVTLEPC H+G+ PPC IIE GI VV+ DP+ +VSG+G Q L I
Sbjct: 64 VSPNGATMYVTLEPCCHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNSEI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + + E + R ++ LK A++ D I S ITG ++ QV
Sbjct: 124 KVTQSVLQRECDELNTVFFHYIKTNRPYVILKYAMTADGKIATYTGESKWITGEKARKQV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R + AI+VG+GTVL D+P L CR+ ++P+R+I D + S ++KTA
Sbjct: 184 HRDRDRYSAIMVGVGTVLKDNPMLNCRIEN--GNNPLRVICDTKLRTPFTSNVVKTASEI 241
Query: 244 PVIIVTENDDPVLALAFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P +I T ++D + + DL +L+ +L + S++VEGGA +
Sbjct: 242 PTLIATASEDNARWRQYEAYGCKLIKIPKDGESIDLVELIKVLGENKIDSVIVEGGAKLN 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
S + + L++ + +Y + G +P+ L + F D LEY
Sbjct: 302 WSILKASLMNKVQVYVGAKLFGGANAKTPIAGDGLAFPNESVSMKLSSISKFDDDCLLEY 361
Query: 355 IG 356
Sbjct: 362 EV 363
>gi|229528728|ref|ZP_04418118.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae 12129(1)]
gi|229332502|gb|EEN97988.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae 12129(1)]
Length = 367
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 180/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9]
Length = 376
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 112/363 (30%), Positives = 179/363 (49%), Gaps = 9/363 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
FDA M L+ +R +G TS NP V ++VKDG ++G G G PH EV AL AG
Sbjct: 15 EFDALMMQRCLQLARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHGEVFALRAAG 74
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L GI
Sbjct: 75 ERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGI 134
Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E E L+ ++ ++ LK A++ D I S IT ++++V
Sbjct: 135 EVIVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLDGKIASNSGHSTWITNNQARSEV 194
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LRA DA++VG TV D+P+LT ++P+R+++ L ++ + T +
Sbjct: 195 HQLRAACDAVIVGGNTVRRDNPQLTTHQQA--GYNPLRVVMSASLNLPENAHLWDTGVAP 252
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+++ E P +K + ++ ++ L RG ++L E G +A I
Sbjct: 253 TLVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARAI 312
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YIGK 357
V ++ + + +IG P+P+ + L V G D +E Y+ +
Sbjct: 313 AENAVQKVLAFIAPKIIGGIYAPTPVGDLGLNSMTESLVLERVNWRTVGCDCLVEGYLPQ 372
Query: 358 NLC 360
Sbjct: 373 KTL 375
>gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
Length = 383
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 126/380 (33%), Positives = 189/380 (49%), Gaps = 23/380 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D RFM+ ALR + + T NP V C++VK+ +I G G HAEV AL
Sbjct: 1 MALTRDDHRFMARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A E+ARGATAYVTLEPC+H G++ PC+Q +I+ G+ RVV ++DP+ VSGRGL+ L+
Sbjct: 61 RIAAEQARGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLA 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD E + + ++TR KR + K+A+S D MA S IT +
Sbjct: 121 AAGIEVDGPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELT--------CRLNGLQEHSPMRIILDPHFKLS 231
+ V LRA S AI+ GIG+VL D+ +LT R + P+R+ILD +L
Sbjct: 181 RADVQRLRAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLP 240
Query: 232 LDSKIIKTALLA-------PVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLT 280
D+ I++TA P+++V L ++ DL+ L+
Sbjct: 241 RDALIMQTADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVR 300
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKN 337
L R +L+E GA +A +F+ L+D +++Y + ++G P PLE
Sbjct: 301 ELAQRQCNEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARPLFELPLETMSASLA 360
Query: 338 FMCVRRDYFGSDVCLEYIGK 357
G D + +
Sbjct: 361 LKITDMRALGQDWRITAVPD 380
>gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673]
Length = 370
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 113/357 (31%), Positives = 177/357 (49%), Gaps = 11/357 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E
Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GA YVTLEPC H G+ PPC + I+ GI RVVV DP+ V G+G++ L + G+ V
Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGVSV 123
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + + +K A++ D I S ITG +++ V
Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + AI+ G+GTV++DDP LTCR +P+RII D + ++++ TA AP
Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCRGVR-GGKNPVRIICDTRLRTPPAARVVATAGQAPT 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
+I T DDP + +++ +++ ++ +L+ L +G+ S+L+EGG + +
Sbjct: 243 VIATCCDDPERHMVYQEAGCSVLTVKEKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ S +V Y + ++G +P+E R G D +E
Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359
>gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
Il1403]
gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis
Il1403]
Length = 362
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 186/359 (51%), Gaps = 12/359 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ + G + NP V LIVK+G +IG+G G HAE+ A ++
Sbjct: 2 KKDEYYMDLAIVLANKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCN 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E GAT YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI
Sbjct: 62 ESPEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGI 121
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V ++E E + + + ++ +K ++ D I + S ITG I++ +V
Sbjct: 122 EVSLNVLEKECEELNKIFFYYVSQGLPYVMMKYVMTLDGKIATSAGQSKWITGEIARQKV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R++ AI++G+ T++ DDP+L+ R +P+RII D H + L SKI+ TA
Sbjct: 182 HQDRSRFMAIMIGVETLILDDPQLSVR--LENGKNPIRIICDTHLRSPLASKIVSTATEI 239
Query: 244 PVIIVTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P II T DP F + + +LK+L L +G+ S+++EGG +
Sbjct: 240 PTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLN 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + +V + Y + + G PSP+E +E+ + Y G D+ LE
Sbjct: 300 ASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358
>gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
20712]
gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM
20712]
Length = 397
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 184/362 (50%), Gaps = 12/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M+ A + G + NP V +IVKDG +IG G G HAE A ++
Sbjct: 21 METKDREYMNRARILADRGRGWVNPNPLVGAVIVKDGRIIGEGWHERYGGLHAERNAFKQ 80
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E+ GAT YVTLEPC HYG++PPC + +IE I RVVV + DP+ V+G+G++ L +
Sbjct: 81 CTEDPAGATLYVTLEPCCHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEMLRKA 140
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI+V+ + E + + +L +R I +K A++ D I S +TG S+
Sbjct: 141 GIVVETGVEEEKLREQNRVFLKYITTRRPWIVMKTAMTLDGKIAAYTGDSHWVTGEESRK 200
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V +R+ I+VG GTV ADDP L CRL G + P+RII+D ++ DS++++TA
Sbjct: 201 KVQEMRSVLMGIMVGSGTVKADDPLLNCRLKG-EVRQPVRIIVDSTAAIATDSQLVRTAD 259
Query: 242 LAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + L + + + DL+ L T L G+ S+L+EGG
Sbjct: 260 RYRTLVAHTSRADAGKLVQLQQKGVETILCPGCDNRVDLQALTTKLGQAGIDSVLLEGGG 319
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ +F+ LVD + + + +IG +P+E + V + G D
Sbjct: 320 ELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVEGKGIAWMKEAIALQSVSIEKVGEDFL 379
Query: 352 LE 353
++
Sbjct: 380 IK 381
>gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603]
Length = 379
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 122/379 (32%), Positives = 182/379 (48%), Gaps = 17/379 (4%)
Query: 1 MPVSS-----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA 55
M S D +M AL+ ++ G TS NP V ++VKD ++G G G HA
Sbjct: 1 MIFSGEVKRMTDQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDSNIVGMGAHMRAGEEHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AGE A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G
Sbjct: 61 EVHALHMAGERAKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPLVSGNG 120
Query: 116 LQWLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + I V + + K+ +T+K A+S D S I
Sbjct: 121 KRKLEEAAIEVTTGVLEAEATLLNRYFFHYMKTKQPFVTIKTAMSLDGKTATVTGESKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ VH R DAILVG+ TVL D+P LT R P+R+ILD H + S
Sbjct: 181 TGEEARADVHQYRHIHDAILVGVNTVLTDNPHLTTR-IPNGGKHPIRVILDTHLRTPPSS 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I L IIV ++ + ++ NI + +++ +L++L + + SL V
Sbjct: 240 HVITDGLTPTWIIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG V +F+ + + I+ Y S +IG P+ K + G
Sbjct: 300 EGGQTVHANFLKTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIG 359
Query: 348 SDVCLEYIGKN---LCLQE 363
+D+ + K+ CLQE
Sbjct: 360 NDIKIVATLKSEVTECLQE 378
>gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91]
gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Nitrosomonas eutropha C91]
Length = 367
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 119/360 (33%), Positives = 181/360 (50%), Gaps = 8/360 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D MS AL+ + + TS NP V C+IV DG V+G G G HAE+ AL E
Sbjct: 6 FTASDYMHMSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALRE 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGAT YVTLEPCSH+GR+PPC + +I + RV++ +DDP+ V+G+G + L +
Sbjct: 66 AGDLARGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKA 125
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + + L+ ++TR R I KIA S D I + S ITG ++
Sbjct: 126 GVEVQTGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQ 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H RA+S AIL G+ +V DDP LT R P+RI+LD + ++ L +K+++ A
Sbjct: 186 DGHRWRARSCAILTGVNSVKVDDPLLTVRYIE-TSRQPIRIVLDSNLEIPLQAKLLENAD 244
Query: 242 LAPVIIVTENDDPVL--ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ V + + A + DLK ++T L G+ LLVE G +
Sbjct: 245 TTWIFTVQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPVLN 304
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + L+D II Y + ++G + + + N G D+ L
Sbjct: 305 GALVAAELIDEIIFYFAPNLLGNSAQAMLVLPEITDLSEKYNLQITDIRKIGIDIRLVAR 364
>gi|149202273|ref|ZP_01879246.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
gi|149144371|gb|EDM32402.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035]
Length = 364
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 135/364 (37%), Positives = 192/364 (52%), Gaps = 11/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ DARFM+ AL R +G + NP+V C+IV+ G ++GRG T+ GG PHAE QAL +
Sbjct: 1 MTGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGGRIVGRGWTSPGGRPHAEPQALAQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYV+LEPC+H+G++PPCA+ +I GI RVV DD D RV+GRG L
Sbjct: 61 AGELARGATAYVSLEPCAHHGQTPPCAEALIAAGIARVVAPFDDNDPRVAGRGFAMLRAA 120
Query: 123 GIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + +E L +L R R +TLK+A S D I A S ITG ++
Sbjct: 121 GIEVRTGVMAEQAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+ DA++VG GT ADDP+LT R G P+R+++ L L S + +TA
Sbjct: 181 VVHGLRARHDAVMVGAGTARADDPQLTVRDMG-ARRQPVRVVVSRRLDLPLLSNLARTAR 239
Query: 242 LAPVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ + + + + D +L L G+T + EGG
Sbjct: 240 DVPLWLCHGPHVDPALVKAWQGIGARLLPCEVTQGQVDPASVLHALGAEGLTRVFCEGGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
A+A S +++ LVD ++ + + IG G+P L + + V G DV
Sbjct: 300 ALAASLLSAGLVDELVGFTAGFAIGAEGLPGVGALGLARLDEAQRYRLVETRALGGDVMH 359
Query: 353 EYIG 356
+
Sbjct: 360 RWSR 363
>gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002]
Length = 371
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 113/356 (31%), Positives = 183/356 (51%), Gaps = 8/356 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ FD M + ++ G T+ NP V ++V+D +IG G G PHAEV AL EA
Sbjct: 10 TDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREA 69
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A+GAT YV+LEPC+H+GR+PPC+Q +++ GI +VVV + DP+ V+G GL+ L+ G
Sbjct: 70 GAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAG 129
Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+V + E+ + ++ R V +R LK A++ D I S IT ++NQ
Sbjct: 130 IEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAWITHQETRNQ 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V+ LR+Q DA++VG TV DDP LT +H+P+RI++ L D +
Sbjct: 190 VYDLRSQCDAVVVGGNTVRLDDPYLTTHGTA--DHNPLRIVVSQTLTLPRDRHLWDVTAA 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V++ +P + R++ + +++ D + ++ L RG +L E G +A +
Sbjct: 248 PTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAA 307
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
I S + ++ + + +IG G P+P+ L V+ G D L
Sbjct: 308 IASGSIQKVMAFIAPKIIGGQGAPTPVGNLGLTLMDEAITLENVQLQSIGHDFLLT 363
>gi|49088842|gb|AAT51612.1| PA4056 [synthetic construct]
Length = 374
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 172/368 (46%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +
Sbjct: 1 MYAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q
Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + ++ R + +K+A+S D MA S ITG +++
Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLS 231
V L A+S +L G T+LADD L R + P+R+++D ++
Sbjct: 181 AVQRLSARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L+S + + A + DL KLL L RG +L
Sbjct: 241 LESAFYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F LVD L+ + +G P PL G
Sbjct: 301 VEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGD 360
Query: 349 DVCLEYIG 356
D +
Sbjct: 361 DWLVTARP 368
>gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus
hydrogenoformans Z-2901]
Length = 361
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 124/357 (34%), Positives = 185/357 (51%), Gaps = 10/357 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + M AL+ ++ +G TS NP V +IV KDG ++G G G PHAE +AL+ AGE
Sbjct: 3 DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARG T YVTLEPC HYGR+PPC II GI++VVV V DP+ +VSG+G++ L GI
Sbjct: 63 KARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIE 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +E +L+ + ++ I+LK A++ D I S ++G S++ VH
Sbjct: 123 VVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR + DA+LVG T++ D+P LTCR+ Q +P RI+L L I +
Sbjct: 183 RLRNEYDAVLVGAKTLIIDNPLLTCRI--PQGRNPYRIVLSGSGNLPEGLNIFQLEKEKN 240
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303
++I P I + R K + + R G+ S+LVEGGA V S +
Sbjct: 241 ILITASKKLPKHVSNGFGHIITTPLGENRINIKEAFLELSRLGIISILVEGGAVVHASLL 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
+RL D ++ + ++G P P+ + + + FG DV +E
Sbjct: 301 QNRLADKAYIFIAPKIVGGKNAPGPIGDLKISLMKDALPLAIHKLRRFGEDVFIEGY 357
>gi|302392186|ref|YP_003828006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acetohalobium arabaticum DSM 5501]
gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acetohalobium arabaticum DSM 5501]
Length = 371
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 185/368 (50%), Gaps = 11/368 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M AL + G TS NP V +IVKDG ++G+G G PHAEV AL
Sbjct: 1 MADYNRDIDYMRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++A ++ AT YVTLEPCSHYG++PPC + +I G+ RVV + DP+ +V+GRGLQ L+
Sbjct: 61 QDAADKTEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLA 120
Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V+ + E L+ ++ +R + LK A++ D I S I+G S
Sbjct: 121 DAGIEVESGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEES 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LR + D ILVGIGTVL+D+P LT RL P+RI+LD ++ LDS ++
Sbjct: 181 RRYVHRLRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQ 240
Query: 240 ALLAPVI-----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A + E L A + DL LL L + SLLVEG
Sbjct: 241 ESEAKTVVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEG 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
G+ + SF+ + LVD I+ + + +IG + ++K G+D
Sbjct: 301 GSRINTSFLFTELVDKILYFIAPKLIGGSEAVQAVGGQGVDKVADGIELGDYELSTIGND 360
Query: 350 VCLEYIGK 357
+ +
Sbjct: 361 ILIVGYPD 368
>gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis BMB171]
Length = 365
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 186/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I ++L+D +ILY + +IG PS + + K F + G D +
Sbjct: 302 IENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 361
>gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dechloromonas aromatica RCB]
gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dechloromonas aromatica RCB]
Length = 367
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 119/358 (33%), Positives = 178/358 (49%), Gaps = 7/358 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL
Sbjct: 1 MSFSAVDHGMMARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE A+G TAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ VSG+GL L
Sbjct: 61 RSAGERAKGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLR 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI +E+E + +++R R + LK+A S D + S ITG +
Sbjct: 121 AAGIETASGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H RA++ AIL GIGTV DDP+L+ R P+R+++D + ++++I++
Sbjct: 181 RRDGHAWRARACAILTGIGTVRDDDPQLSVRDVA-TTRQPLRVVVDSKLETPVNARILQG 239
Query: 240 ALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ V N L I DL LL L RG+ + E G +
Sbjct: 240 GPVLIAGAVENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAGFKL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
S + LVD ++LY + +IG L ++ G+D+ +
Sbjct: 300 NGSLLREGLVDELLLYLAPCLIGHQASGLFNLPELTTLDGKQRLQIRDLRQVGADIRV 357
>gi|153828188|ref|ZP_01980855.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
gi|229522216|ref|ZP_04411633.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TM 11079-80]
gi|148876277|gb|EDL74412.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39]
gi|229341141|gb|EEO06146.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TM 11079-80]
Length = 367
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Eubacterium rectale DSM 17629]
Length = 386
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 37/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E
Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI V
Sbjct: 63 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E + +R ++ +K A++ D I S ITG ++ V
Sbjct: 123 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P
Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----------------------------- 276
I+ A + + + +
Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E +
Sbjct: 301 DLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360
Query: 337 NFMCV-----RRDYFGSDVCLE 353
V + G D +E
Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382
>gi|91225069|ref|ZP_01260291.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
gi|91190012|gb|EAS76283.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01]
Length = 375
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 106/363 (29%), Positives = 168/363 (46%), Gaps = 8/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+
Sbjct: 10 FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L
Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + + L+ + + + LK+A S D ++ S IT ++
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPAARQ 189
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA S IL TV+ D+ L R + L + L + + + +
Sbjct: 190 DVQRYRAISGGILSTSKTVIDDNASLNVRWDDLPNSVQAQ-YLQEELRQPVRVILDRQNH 248
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVA 299
L + + D + + I ++ + L I + L VE GA +A
Sbjct: 249 LTDALKLFHTDGERVIVRSDGDCIPLLDSADQIDLSTTLKRISDEHHINHLWVEAGATLA 308
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + LVD +I+Y + ++G G L + G D+ +
Sbjct: 309 SAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRMVGVDIRITAT 368
Query: 356 GKN 358
K
Sbjct: 369 IKR 371
>gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
Length = 370
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 12/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M AL + G + NP V +IV +G ++G+G + G PHAEV AL+EAG
Sbjct: 7 NLDEYYMKMALNLALKGQGNVNPNPLVGAVIVNNGNIVGQGYHKFYGGPHAEVYALKEAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+G YV+LEPCSHYG++PPCA+ +++ GI++VV+ + DP+ V+G G++ L + G+
Sbjct: 67 ESAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNGV 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E K ++ EK + LK A++ D I S ITG S+ V
Sbjct: 127 EVIVGVLEEEAKKVNEIFIKYITEKTPFVILKTAMTLDGKIATKTGESQWITGEESRKYV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R + I+ GIGT+ D+P LT R + I+D + ++SKI T
Sbjct: 187 HTIRNRVMGIMAGIGTIKKDNPLLTTRFIEDGKSPTAI-IVDSKLSIPVESKIFTTLNER 245
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAV 298
+II + ++ I +D + L+ L G+ S+L+EGG +
Sbjct: 246 KIIIACTEEFDAKKKEELEQKGIKIIITPKDNNRVDLKYLMKELGKEGIDSILLEGGGEL 305
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
S ++S++VD I+ + + ++G +P+E +E + G D+ +E
Sbjct: 306 NFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEILKNAVLINKMNCKNVGEDLLIE 365
Query: 354 YIGKN 358
N
Sbjct: 366 GYFNN 370
>gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
Length = 367
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 181/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ ++++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLDADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + VL +A + I + + L + + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSSVLRVASENAELCISAKNGKLDLRELLAQLAQQQNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|269965078|ref|ZP_06179243.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
gi|269830381|gb|EEZ84606.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B]
Length = 375
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 105/363 (28%), Positives = 168/363 (46%), Gaps = 8/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+
Sbjct: 10 FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L
Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + + L+ + + + LK+A S D + S IT ++
Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALNNGQSQWITSPAARQ 189
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA S IL TV+ D+ L R + L + + + + + + +
Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLRE-ELRQPVRVILDRQNH 248
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVA 299
L + + D + + I ++ + L I + L VE GA +A
Sbjct: 249 LTGALKLFHTDGERVIIRSDGDCIPLLDSADQIDLSTTLKRISDEHHINHLWVEAGATLA 308
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + LVD +I+Y + ++G G L + G D+ +
Sbjct: 309 SAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRMVGVDIRITAT 368
Query: 356 GKN 358
K
Sbjct: 369 IKR 371
>gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
Loch Maree]
gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str.
Loch Maree]
Length = 365
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 186/361 (51%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EA E+A+
Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREASEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT Y+TLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++++V +R
Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGI TV+ DDP LT R+ G + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEGGRSPKAI--IVDSNLRIPLESKILETLSKRAIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T + +N L KL+ L GV S+L+EGG+ +
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQYLGSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD I+ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
195]
gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes
195]
Length = 365
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 123/364 (33%), Positives = 176/364 (48%), Gaps = 14/364 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++MS AL ++ +G S NP+V +IVK+G V+G+G T G HAE+ AL++A E+A+
Sbjct: 2 KYMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V
Sbjct: 62 GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
MME E + AY +T K A+S D G S I+ S++ H +R
Sbjct: 122 GMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLA 243
SD I+ G+ T+L DDP LT R+N + P R+I+D + + L S +
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVPGNT 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAH 300
V + + D R L L L GVTS+LVEGG V
Sbjct: 242 IVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGGIVLG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-Y 354
S + +LVD ++++ + I+IG P+ E + FG DV + Y
Sbjct: 302 SLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLISGY 361
Query: 355 IGKN 358
+ K
Sbjct: 362 VIKE 365
>gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
BP-1]
gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus
BP-1]
Length = 379
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/360 (29%), Positives = 180/360 (50%), Gaps = 14/360 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+++ DA++M L + G T+ NP V C+IV +G VIG G G PHAEV AL
Sbjct: 9 EIATIDAQYMGRCLELAARAKGRTAPNPLVGCVIVAEGRVIGEGFHPKAGEPHAEVFALR 68
Query: 62 EAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
E AT YV LEPC+HYGR+PPC + I+ GI +VVV + DP+ +V+G G++
Sbjct: 69 SVSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNPQVAGAGVE 128
Query: 118 WLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + L+ ++ R +R LK A++ D I S+ ++G
Sbjct: 129 RLRSAGIEVTVGVREADCQRLNEAFVHRVRYQRPFGILKYAMTLDGKIASRAGHSLWVSG 188
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ VH LR++ DA++VG TV D+P LT R H+P+R+++ L D+ +
Sbjct: 189 EAARAMVHQLRSECDAVIVGGNTVRLDNPLLTSR----HGHNPLRVVMSRTLDLPPDASL 244
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
T A +++ + + L + + + +++ + ++ +L RG+ + L E G
Sbjct: 245 WDTTAAATLVVTSASPQHPLIPQLQARGVEVVHREPLTPTAVMALLHQRGIMTALWECGG 304
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
++A + I +V + + + +IG P+P+ + L K V G D+
Sbjct: 305 SLAAAAIAEGMVQKVWAFIAPKIIGGFDAPTPVADLGLTKMHEALYLEDVTWQTVGEDIL 364
>gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Eubacterium rectale M104/1]
Length = 388
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 37/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E
Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI V
Sbjct: 63 PQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E + +R ++ +K A++ D I S ITG ++ V
Sbjct: 123 VTQVLKDECDRLNEVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P
Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----------------------------- 276
I+ A + + + +
Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E +
Sbjct: 301 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360
Query: 337 NFMCV-----RRDYFGSDVCLE 353
V + G D +E
Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382
>gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. ANA-3]
gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. ANA-3]
Length = 381
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 123/371 (33%), Positives = 184/371 (49%), Gaps = 16/371 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + + L+ +++E +T+K+A S D ++ S ITG +
Sbjct: 121 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFK 229
+ V LR ++ A++ GI TVLAD P L R + Q P+R+ILD +
Sbjct: 181 RRDVQRLRLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + + ++ ++ + L + + D R L +G+
Sbjct: 241 MPITAALLAIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLGKSCN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
+L+E GA +A +FI L D ++LY++ ++G G + V
Sbjct: 301 QVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLVDER 360
Query: 345 YFGSDVCLEYI 355
G+D+
Sbjct: 361 KVGADMRFTLR 371
>gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
Length = 353
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 126/352 (35%), Positives = 180/352 (51%), Gaps = 7/352 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R GLT NP+V C++VKDG +I G G PHAEV AL +AG+ A+ +
Sbjct: 1 MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKAGQNAKDS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPCSHYGR+PPC IIE G++RVVV DP+ +V G G++ L GI VD +
Sbjct: 61 TLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDVGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E + + + R +ITLK A S D + S IT S+ H LRA+
Sbjct: 121 LEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG+ TV+ DDP LT R E P+R++LDP+ + L + ++ +++
Sbjct: 181 ATAILVGVNTVVKDDPLLTVRAFL-WERQPIRVVLDPYLRTPLQANLMVDTSAKTILVTC 239
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + DL+ L+ + + + L+VEGGA FI
Sbjct: 240 SQKEDKVKKLEDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIEEG 299
Query: 307 LVDSIILYRSQIVIGEG-GIPSP-LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L D I+++ ++IG G + SP E+ R G DV +EY
Sbjct: 300 LWDRIVVFLGPLLIGNGIRVRSPGAEKLMDAIPLRKRRLWQLGEDVAIEYTR 351
>gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688]
gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688]
Length = 368
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 191/358 (53%), Gaps = 8/358 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL +
Sbjct: 2 FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L +
Sbjct: 62 AGDLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E++ + +++R +R + KIA S D + S ITG ++
Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++
Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAV 298
V D + +++ R LL +L RG+ ++VE GA +
Sbjct: 242 GNALIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGATL 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++ L+D +ILY + ++G L+ + G D+ L
Sbjct: 302 NGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIRL 359
>gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1]
gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1]
Length = 369
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 109/366 (29%), Positives = 166/366 (45%), Gaps = 10/366 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D + MS AL ++ T+ NP+V C+I + V+G G G PHAEV A
Sbjct: 1 MSHFSAIDYQMMSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG L
Sbjct: 61 LRMAAERAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E + + +L + + LK+A S D +A S ITG
Sbjct: 121 REAGIEVSVGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPE 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSK 235
++ V RAQS AIL TV+ D+ L R + L H I D + + +
Sbjct: 181 ARRDVQAYRAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPD-ELRQPTRVILDR 239
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + + V + L + + + + +E G
Sbjct: 240 QNALSRELKLFQSEGDIIRVAQAGGDLNVTMNSANQLDLAETLQGLAKDQQINHVWIEAG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A +A S I +LVD +I+Y + ++G G L E GSD+
Sbjct: 300 ATLAGSMIQQQLVDELIVYLAPKLMGADGRGLIGALGLTEMQDVIELDIKDIRMVGSDIR 359
Query: 352 LEYIGK 357
+ +
Sbjct: 360 IVATPQ 365
>gi|315179335|gb|ADT86249.1| riboflavin biosynthesis protein RibD [Vibrio furnissii NCTC 11218]
Length = 369
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 12/369 (3%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L
Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + + L+ ++++ + LK+A S D +A S IT
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---K 235
++ V RAQ+ A+L TVLAD+ LT R L H + H + + + +
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQA-TYAEQHLRQPVRAILDR 239
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + V + L + + + VE G
Sbjct: 240 QHQLHRELTLYATDSAVLRVANQDADVCVALDEQGQLNLREVLGALAKHHNINHIWVEAG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
A +A S + LVD +++Y + ++G G L + G D+
Sbjct: 300 ATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALSIQDCRMVGPDIR 359
Query: 352 L--EYIGKN 358
+ K+
Sbjct: 360 VVATLERKD 368
>gi|70732823|ref|YP_262590.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
gi|68347122|gb|AAY94728.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5]
Length = 377
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 178/365 (48%), Gaps = 17/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R T NP V C+IV+DG V+G G G PHAEV AL AGE
Sbjct: 10 LDAHYMARALELARKGRYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGE 69
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGLQ L+Q GI
Sbjct: 70 LARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGID 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ E E + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 130 THGGVLEGEARAINKGFLKRMEHGLPYVRVKLAMSLDGRTAMASGESQWITGPAARSAVQ 189
Query: 185 LLRAQSDAILVGIGTVLADDPELTC----------RLNGLQEHSPMRIILDPHFKLSLDS 234
LRA+S +L G TVLADD LT + P+R+++D ++ LD+
Sbjct: 190 RLRAESSVVLTGADTVLADDARLTVRAAELGLDAEQTALAMSRPPLRVLIDGRLRVPLDA 249
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
P ++ T + I DL++LL L RGV +LVE
Sbjct: 250 PF---FKAGPALVATCAAVEEQYANGPECLIVPGPDGQVDLRRLLLELAARGVNEVLVEA 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
G +A +F LVD ++ + +G P PL + + G D
Sbjct: 307 GPRLAGAFAQQGLVDEYQIFVAGKFLGSSARPLLDWPLAQMSQAPLLKIIEMRAVGDDWR 366
Query: 352 LEYIG 356
+ I
Sbjct: 367 VTAIP 371
>gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-5-phosphoribosylamino uracil reductase
[Lactococcus lactis subsp. lactis CV56]
Length = 362
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 116/359 (32%), Positives = 187/359 (52%), Gaps = 12/359 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++
Sbjct: 2 KKDEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCN 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E GA YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI
Sbjct: 62 ESPEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGI 121
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V ++E E + + + ++ +K A++ D I + S ITG I++ +V
Sbjct: 122 EVSLNVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R++ AI++G+ T++ DDP+L+ R +P+RII D H + L SKI+ TA
Sbjct: 182 HQDRSRFMAIMIGVETLILDDPQLSVR--LENGKNPIRIICDTHLRSPLASKIVSTATEI 239
Query: 244 PVIIVTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P II T DP F + + +LK+L L +G+ S+++EGG +
Sbjct: 240 PTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLN 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + +V + Y + + G PSP+E +E+ + Y G D+ LE
Sbjct: 300 ASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358
>gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str.
13]
gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13]
Length = 366
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ +F+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
'sapolanicus']
gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium sp.
'sapolanicus']
Length = 381
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 192/372 (51%), Gaps = 20/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D R+M+ AL ++ G S NP V ++VK+G +IG G + G PHAEV AL+
Sbjct: 4 KFSITDIRYMARALEIAKKGEGSASPNPMVGAVLVKNGEIIGEGYHKFYGGPHAEVYALK 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAG+ A A Y+TLEPCSHYG++PPCA +I+ GI+R V+ + DP+ VSGRG++ L +
Sbjct: 64 EAGQNANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELLKE 123
Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ +M + K +L ++ LK A + D I + S IT ++
Sbjct: 124 AGIEVELGLMAEKAKDLNEVFLKYITSDYPYVYLKKAQTLDGFIASSTGHSKWITNEKAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+ H LR + DAI+VGIGTVLADDP LT RL +R+ILDP + LD+KII
Sbjct: 184 LEGHKLRHKVDAIMVGIGTVLADDPSLTTRLEEQGGIDSLRVILDPELDMPLDAKIINQE 243
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILVGRG 286
A +++ A + + +L +L L
Sbjct: 244 STASTLLIASEASLESNSAALMEKKEKLLAKNNVDIIAVPLEEEGFLNLDFILRQLHDLN 303
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEG----YLEKNFMCV 341
++S+L+EGGA +++SF+N L+D + + + G GI S +G K+ +
Sbjct: 304 ISSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGGDDGISSFCGQGPKLMSDSKDIKIL 363
Query: 342 RRDYFGSDVCLE 353
R + G ++ L
Sbjct: 364 DRRFLGDNILLI 375
>gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC341]
gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC341]
Length = 367
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 183/366 (50%), Gaps = 9/366 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPPSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A ++ I + + L + V + VE G+
Sbjct: 240 QHQLYPELALYQTPSPVLRVASENADLRISAENGKLDLRELLTQLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQQLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGKN 358
K+
Sbjct: 360 IATPKS 365
>gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
c2]
gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
c2]
Length = 386
Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 179/368 (48%), Gaps = 14/368 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D R+M AL + + T NP V C+IV G V+GRG A G PHAEV AL+E
Sbjct: 10 FSPDDTRWMREALALAERGLTTTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQE 69
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATAYVTLEPC+H GR+P CA + + G+RRVV + DPD RV+G G L
Sbjct: 70 AGERAKGATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTA 129
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ +E+E + +L+R R +T+KIA S D +A S ITG +++
Sbjct: 130 GVQVESGLLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARH 189
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL------QEHSPMRIILDPHFKLSLDSK 235
V LRA+ A+L G+ TVL DD L RL+ P+R++LD +L +
Sbjct: 190 DVQFLRARHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAP 249
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLV 292
I + + + + L IL +G++ +LV
Sbjct: 250 IFDVQGEVRIYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVLV 309
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348
E G +A +F++ VD +I+Y++ +++G P + + G
Sbjct: 310 ESGPKLAGAFVDQGWVDELIIYQAPVLLGHKAQPCLDLASPIRLDDAPRWQIRDTTPVGQ 369
Query: 349 DVCLEYIG 356
D+ + +
Sbjct: 370 DIRITLVP 377
>gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
Length = 369
Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 127/367 (34%), Positives = 178/367 (48%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG
Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V
Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDV 123
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
M S+ + +L R ++ LK+ S D MA S IT ++ V
Sbjct: 124 RHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234
LRAQS AIL TVLADDP LT R P+RIILD +++
Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQH 243
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+++ + D ++ + DL ++ L R V S+ VE
Sbjct: 244 RVV--QQPGTTWLARLQPDDQNWPQEVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GAA++ + + + LVD +ILY + ++G+ G LE F+ G D+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPDL 361
Query: 351 CLEYIGK 357
L K
Sbjct: 362 RLRLKPK 368
>gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus 1942]
gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus atrophaeus 1942]
Length = 363
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 9/360 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M+ AL ++ G T +NP V ++VK+G ++G G G HAEV A++ AG+
Sbjct: 1 MEEYYMNTALELAKQGEGQTGSNPLVGAVVVKNGEIVGMGAHLKYGEAHAEVHAIKMAGK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+G+G+ + GI
Sbjct: 61 HVKDADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D + S IT ++
Sbjct: 121 VKEGILTDQAEKLNEKFLHYMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG+GTV AD+P LTCR P+R+ILD + ++K+I
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCR-LPNTVKQPVRVILDTSLTIPEEAKVILDQAAPT 239
Query: 245 VIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T D L+ I + + +L IL G+ S+ VEGGAAV SF
Sbjct: 240 WIFTTSQADAEKKKRLSDFGVKIFTLENGHIHIPDVLKILAEEGIMSVYVEGGAAVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+ II Y + +IG PS + + + G D+ LE K
Sbjct: 300 VKEGCYQEIIFYIAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTAITHIGQDIKLEAKPK 359
>gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SP195]
gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
SP195]
Length = 384
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 21 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 80
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 81 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 140
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ V
Sbjct: 141 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 200
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 201 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 258
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 259 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 318
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 319 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 377
Query: 357 KNLCLQE 363
C QE
Sbjct: 378 IYPCSQE 384
>gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 3502]
gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 19397]
gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
Hall]
gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clostridium botulinum A str. ATCC 3502]
gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
ATCC 19397]
gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str.
Hall]
Length = 365
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 184/361 (50%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G + NP V ++V + +IG G Y G PHAEV AL+EAGE+A+
Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVNNNKIIGEGYHKYFGGPHAEVYALKEAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVIT 125
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGIGT++ D+P L R+ + + I+D ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIERGRSPKAI--IVDSSLRIPLESKILETLNERTIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T + +N L +L+ L GV S+L+EGG+ +
Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|15642269|ref|NP_231902.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121586201|ref|ZP_01675992.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
gi|153820478|ref|ZP_01973145.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
gi|153823263|ref|ZP_01975930.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
gi|227082395|ref|YP_002810946.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
gi|229507656|ref|ZP_04397161.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae BX 330286]
gi|229512149|ref|ZP_04401628.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae B33]
gi|229519284|ref|ZP_04408727.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae RC9]
gi|229607160|ref|YP_002877808.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae MJ-1236]
gi|254849400|ref|ZP_05238750.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
gi|298500355|ref|ZP_07010160.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
gi|9656833|gb|AAF95415.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549613|gb|EAX59637.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80]
gi|126508979|gb|EAZ71573.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457]
gi|126519224|gb|EAZ76447.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33]
gi|227010283|gb|ACP06495.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2]
gi|229343973|gb|EEO08948.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae RC9]
gi|229352114|gb|EEO17055.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae B33]
gi|229355161|gb|EEO20082.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae BX 330286]
gi|229369815|gb|ACQ60238.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae MJ-1236]
gi|254845105|gb|EET23519.1| riboflavin-specific deaminase [Vibrio cholerae MO10]
gi|297541048|gb|EFH77102.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757]
Length = 367
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ ++ +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + L + V L VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQLWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica
T6c]
gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas atlantica T6c]
Length = 372
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 111/370 (30%), Positives = 185/370 (50%), Gaps = 15/370 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
M S+ DA+ M+ A+R + TS NP+V C+I G ++G+G G PHAE+
Sbjct: 1 MTQFSALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIH 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ +AGE +GATAYVTLEPC+H+GR+ PC++ +++ G++RVV + DP+ V+G GLQ
Sbjct: 61 AIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQK 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGF 177
LS G+ V + L+ ++++ + +T+K+A S D + S ITG
Sbjct: 121 LSDAGVQVSSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--------MRIILDPHFK 229
+++ V RAQS AIL G GTVLAD+P L R + L + + +
Sbjct: 181 LAREDVQRHRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + AL +P++I+ + ++ DL+ ++ L RG
Sbjct: 241 NQMRPDLHLFALSSPIVIINSQPNTAEFPDHVEQYQAQSNGAQLDLQDVMKHLGQRGFNH 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+ VE GA +A + + ++L+D +ILY++ ++G+ G L +
Sbjct: 301 IWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQ 360
Query: 346 FGSDVCLEYI 355
G D+ L
Sbjct: 361 VGPDLKLTAR 370
>gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4]
Length = 368
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 190/358 (53%), Gaps = 8/358 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL +
Sbjct: 2 FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L +
Sbjct: 62 AGNLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E++ + +++R +R + KIA S D + S ITG ++
Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239
V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++
Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAV 298
V D + +++ R LL +L RG+ ++VE GA +
Sbjct: 242 GNALIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGATL 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++ L+D +ILY + ++G L+ + G D+ L
Sbjct: 302 NGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIRL 359
>gi|209964642|ref|YP_002297557.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
gi|209958108|gb|ACI98744.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW]
Length = 379
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 144/367 (39%), Positives = 206/367 (56%), Gaps = 12/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AAL + +G NPSV C++V++G V+GRGVT GG PH E +AL +
Sbjct: 12 FSDQDRAHMRAALTLAARGLGRVWPNPSVGCVLVREGRVVGRGVTGAGGRPHGETEALRQ 71
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+ARGATAYV+LEPC+H+GR+PPC + ++ G+ RVVV +DPD RVSG GL L
Sbjct: 72 AGEQARGATAYVSLEPCNHHGRTPPCTEALMAAGVARVVVACEDPDPRVSGGGLARLRAA 131
Query: 123 GIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + L+A R E R +TLK+A S D I S ITG +++
Sbjct: 132 GLEVASGLLEAEAQELNAGFFLRIREGRPLVTLKLATSLDGRIATRTGESRWITGPVARA 191
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LRA DAILVGIGT LADDPELTCRL G+ + SP+RI+LD +L L S++++TA
Sbjct: 192 WGHGLRASHDAILVGIGTALADDPELTCRLPGMADRSPVRIVLDSRLRLPLTSRLVRTAD 251
Query: 242 LAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEG 294
PV ++T D +P AF +++I + ++ L RG+T +L EG
Sbjct: 252 RTPVWLITRPDAAEPARMAAFADCGVDLIPVEPGPGGEIPLPQALRTLAARGITRVLAEG 311
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDV 350
GA +A S + L D + +R+ +++G +P+ + + + G D+
Sbjct: 312 GARLAASLLRDGLADRLEWFRAGLLLGGDALPAAVGFGADRLADAPRYERIAVRPAGEDL 371
Query: 351 CLEYIGK 357
Y +
Sbjct: 372 LESYRRR 378
>gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
Length = 375
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 123/362 (33%), Positives = 179/362 (49%), Gaps = 16/362 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ A+ +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 7 LDAHYMARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L + GI
Sbjct: 67 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + +L R + K+A+S D MA S ITG ++ V
Sbjct: 127 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQ 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA+S +L +VL D+ +T R L P+R+++D +L LD+
Sbjct: 187 RLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDA 246
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DDP A A + D DL LL L RGV +L+E
Sbjct: 247 PFFQAGPA--LVVTAAGDDPRYAAAGHELLNLPGDDDQVDLPALLRCLAERGVNEILLEA 304
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA + +F LVD L+ + +G P PL + G D
Sbjct: 305 GAGLVGAFARQGLVDEFQLFVAGTFLGSEARPLLDWPLSKMSEAPRLKITEMRAVGDDWR 364
Query: 352 LE 353
+
Sbjct: 365 VT 366
>gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831]
gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase :
5-amino-6-(5-phosphoribosylamino) uracil reductase)
[Oceanobacillus iheyensis HTE831]
Length = 367
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 185/361 (51%), Gaps = 11/361 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M A+ ++ G T NP V +IV ++G G G PHAE+ AL+ AG
Sbjct: 2 TDDKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHNRIVGVGSHLKAGEPHAEIHALQMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH GR+ PCA ++E G+RRVV+ DP+ V+G G++ L GI
Sbjct: 62 ENAKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGI 121
Query: 125 IVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + I + K+ IT+K A + D + S IT ++ V
Sbjct: 122 EVEVGVLEDESISMNEVFNKFITHKQPFITMKAASTLDGKVATKTNHSKWITSEAAREDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR + AILVGI T++ DDP LT R+ +P+RI+LD ++ LD++II+
Sbjct: 182 HHLRNEHAAILVGIQTIIHDDPALTTRIPN--GRNPIRIVLDSSLRIPLDAQIIQDKRAP 239
Query: 244 PVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I E + + IN + D++ ++ L + ++SLL+EGG +
Sbjct: 240 TMIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVNHLGNQQISSLLLEGGGNIHA 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
SF+ + LVD ++LY + + G P+ E +E+ + + ++ D G D
Sbjct: 300 SFLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDSIDLLNLKIDQIGPDFRFIGY 359
Query: 356 G 356
Sbjct: 360 P 360
>gi|327484786|gb|AEA79193.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
cholerae LMA3894-4]
Length = 365
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 8/362 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +
Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E++ ++ +L R ++ LK+A S D +A S IT ++
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDRQHQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P + + + PVL +A I+ + + L + V + VE G+ +A
Sbjct: 241 LHPELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQHNVNQVWVEAGSQLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 301 QSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIAT 360
Query: 356 GK 357
K
Sbjct: 361 PK 362
>gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678]
Length = 384
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 129/374 (34%), Positives = 190/374 (50%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + MS A++ +R T NP V C+IVKD ++G G G PHAEV AL
Sbjct: 6 SWSVLDTQMMSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 66 MAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + + A+++P+++V+ P A +++ + + L +G+
Sbjct: 246 PLSAACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G + V
Sbjct: 304 NHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALTLVDE 363
Query: 344 DYFGSDVCLEYIGK 357
G D L K
Sbjct: 364 RKLGPDTRLILSVK 377
>gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
VCS1703A]
gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
VCS1703A]
Length = 368
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 9/360 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL +R + + NP V C+IVK+ +IG G G HAE+ AL AG
Sbjct: 10 DSDLFYMHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAG 69
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+AR AT YVTLEPC+H+GR+PPC +I G++RVV+ DP+ V+G+G+ L GI
Sbjct: 70 TQARDATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGI 129
Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V++ + ++ + R R +TLKIA S D +A S ITG +++ V
Sbjct: 130 SVEQGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDV 189
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIKTALL 242
H R +DA+L G G+V+ D+ LT R + P+R+++D K ++ +
Sbjct: 190 HFHRLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKTPANAALFCD--P 247
Query: 243 APVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+P+++VT P + ++ L LL L R + L VE G +A +
Sbjct: 248 SPILMVTTQPPPQSFPQMVEYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGA 307
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
F+ +LVD I+LY + +G+ P PL F G D L +
Sbjct: 308 FLTEQLVDEILLYLAPTFLGDSARPLVALPPLAHLSDRMRFSIADAHLIGDDWRLSLLVN 367
>gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
Okra]
gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str.
Okra]
Length = 365
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 183/361 (50%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+
Sbjct: 6 FHMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +V +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGI TV+ D+P LT R+ G + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEGGRSPKAI--IVDSNLRIPLESKILETFNKRAIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ +N L +L+ LV GV S+L+EGG+ +
Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae CT 5369-93]
gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae CT 5369-93]
Length = 365
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 177/362 (48%), Gaps = 8/362 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +
Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E++ + +L R + LK+A S D +A S IT ++
Sbjct: 122 GIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDRQHQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P + + + PVL +A + I + + L + V L VE G+ +A
Sbjct: 241 LHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQHNVNQLWVEAGSQLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 301 QSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIAT 360
Query: 356 GK 357
K
Sbjct: 361 PK 362
>gi|304410191|ref|ZP_07391810.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
gi|307302098|ref|ZP_07581856.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
gi|304351600|gb|EFM15999.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
gi|306914136|gb|EFN44557.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
Length = 384
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 130/374 (34%), Positives = 192/374 (51%), Gaps = 20/374 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 6 SWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L
Sbjct: 66 MAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + + A+++P+++V+ P A +++ + + L +G+
Sbjct: 246 PLSAACL--AIVSPILLVSTVAYPAEFQAQLLSHVSCLVLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G + V
Sbjct: 304 NHVLVEAGATLAGAFLAEGLADELMLYQAMKILGGQGRNLLQLPDYKTMAQIPALTLVDE 363
Query: 344 DYFGSDVCLEYIGK 357
G D L K
Sbjct: 364 RKLGPDTRLILSVK 377
>gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
1]
gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT
1]
Length = 367
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 126/362 (34%), Positives = 188/362 (51%), Gaps = 12/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D R+M AL + G TS NP V ++VKDG +G G G PHAE+ ALEEAG
Sbjct: 2 DADERYMWLALDLAAQGQGTTSPNPMVGAVLVKDGETVGTGYHQKAGGPHAEIIALEEAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH G++PPC II G+R+VVV + DP+ V+G GL+ L + GI
Sbjct: 62 EAARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGI 121
Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E ++ +R +T+K A++ D I S I+G S+
Sbjct: 122 KVKSGVLEEKALRLNEVFVKYITSRRPFVTMKAAMTMDGKIATRTKASRWISGERSREFG 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR +DAI+VGIGT+LAD+P LT RL +P+RI++D LDSK++
Sbjct: 182 HRLRHHTDAIMVGIGTLLADNPSLTTRLPE-GGKNPLRIVVDSKANTPLDSKVVAENPEK 240
Query: 244 PVIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+I VT+ D A + K + L L+ L ++S+LVEGG+ +
Sbjct: 241 TLIFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLLMDNLGKHEISSVLVEGGSVL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
+S + S LVD + + + ++ G P+P+ + + + ++ +D+ +
Sbjct: 301 NYSLLASGLVDKVYFFMAPLIFGGDTAPTPVGGTGVATVEEAWHVKDIEISHYDTDLLIT 360
Query: 354 YI 355
Sbjct: 361 GY 362
>gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301]
Length = 370
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 178/362 (49%), Gaps = 12/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D +M+ ALR + + T NP V C+IVK+ ++G+G G PHAEV AL E
Sbjct: 2 FSIADHTYMTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALRE 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A GA AYVTLEPC+H+GR+PPC +I ++RVVV + DP+ V+G G++ L
Sbjct: 62 AGANAEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAH 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ ME+E K +++R ++ K+A S D + S+ ITG ++
Sbjct: 122 GIEVEVGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARL 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA- 240
V RAQS AI+ GIGTVL D+P + R P+R+I+D + + D K++
Sbjct: 182 DVQHWRAQSCAIVTGIGTVLTDNPSMNVR-LENTGRQPLRVIVDSNLQTPTDCKMLNPEL 240
Query: 241 -LLAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
L+PV++ D A A + +L LL L R V +L+E G
Sbjct: 241 LSLSPVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ +F+ + LVD I Y + ++G L E + G D+
Sbjct: 301 QGLNGAFLQAGLVDEFIFYYAPKLMGADAKGMFAISELIEMQQATDLQIFDVRQIGQDIR 360
Query: 352 LE 353
+
Sbjct: 361 VR 362
>gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
Length = 367
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L
Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A + I + + L + V L VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQHNVHQLWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421]
Length = 362
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 118/353 (33%), Positives = 176/353 (49%), Gaps = 12/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL+F++ G TS NP V +IVK+G +IG G G PHAE AL E GA
Sbjct: 1 MRTALQFAKKGAGWTSPNPMVGAVIVKNGKIIGSGFHERYGEPHAERNALRACTETPAGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H+G+ PPC ++E GI RVV+ DP+ V G+G++ L + GI V +
Sbjct: 61 TLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEVSENI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + KR + +K A++ D I S IT ++ VHL R +
Sbjct: 121 LKEECDRLNEVFFHYIQTKRPFVVMKYAMTMDGKIAAVTGNSKWITEEKAREHVHLQRHR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG+GTVLADDP LTCR+ +P+RII D + + L ++II+TA P II T
Sbjct: 181 YTAIMVGVGTVLADDPLLTCRIKD--GKNPIRIICDTNLRTPLSAQIIRTAKKVPTIIAT 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ A+ I+ ++ + L+ +L + SLL+EGG + + + S
Sbjct: 239 CCTEKEKQFAYLHAGCRILTVPEKNGRVDLQNLMPMLGEEKIDSLLLEGGGTLNWAALES 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+V + Y + ++G +P+E + G D +E
Sbjct: 299 GIVQKVHAYIAPKLLGGQSAKTPVEGIGFHSPDSSVRLINSSITQLGEDFLIE 351
>gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. MR-7]
gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. MR-7]
Length = 381
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 125/371 (33%), Positives = 185/371 (49%), Gaps = 16/371 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + + L+ +++E +T+K+A S D ++ S ITG +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFK 229
+ V LR ++ A++ GI TVLADDP L R + Q P+R+ILD +
Sbjct: 181 RRDVQRLRIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + + ++ ++ + L + + D R L +G+
Sbjct: 241 MPIKAALLAIESPILLVSTEPYSPAFMAQLPSHVTCLQLPAIDGRISLPTLLSYLGKSCN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
+L+E GA +A +FI + L D ++LY++ V+G G + V
Sbjct: 301 QVLIEAGATLAGAFIGAGLADELVLYQAMKVLGAQGRNLLELPDYQMMADIPTLKLVDER 360
Query: 345 YFGSDVCLEYI 355
G+D
Sbjct: 361 KVGADTRFTLR 371
>gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 371
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 132/363 (36%), Positives = 188/363 (51%), Gaps = 15/363 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D +M AL +R G T TNP V C+IVKD +IG+G G HAEV A+ +A
Sbjct: 8 DIFYMERALEIAREGTGKTKTNPLVGCVIVKDDKIIGQGAHLKFGENHAEVNAILDAKSR 67
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+ RGAT YV LEPCSHYG++PPCA+ I++ GIRRVV+ DP +VSGRG++ L G
Sbjct: 68 GEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDAG 127
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V E E + T KR + LK +S D I S IT S+
Sbjct: 128 ISVTEGLCEEECLNLNERFFTYLKNKRPFVVLKSGMSLDGKIATESGESKWITSEFSRAH 187
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR Q DAI+VGIGTVLADDP L R +++P+RII D ++ LD+K+++ L
Sbjct: 188 GHELRGQLDAIMVGIGTVLADDPSLNTRHCK-YKNNPIRIITDSSLRIPLDAKVLRDDLD 246
Query: 243 APVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ II T + A+ + I DLK L+ L ++S+L+EGG
Sbjct: 247 SIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVDLKDLMEKLKDYDISSILLEGGR 306
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ + + LVD + + I++G GIP+ ++E ++ + D+ +
Sbjct: 307 TLNAEMLKNNLVDKFYFFIAPILLGSKGIPAIGDLEIDELKDAIRIKDMKCEKLFDDILV 366
Query: 353 EYI 355
Sbjct: 367 TGR 369
>gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein,
5-amino-6-(5-phosphoribosylamino)uracil reductase,
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. VS]
gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein,
5-amino-6-(5-phosphoribosylamino)uracil reductase,
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dehalococcoides sp. VS]
Length = 365
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 127/364 (34%), Positives = 179/364 (49%), Gaps = 14/364 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+
Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V
Sbjct: 62 GAALYVTLEPCCHQGRTPPCTGSIIESGIKEVYIATLDDNPLVSGKGKKELENAGIKVHL 121
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
MME E + AY +T K A+S D G S I+ S++ H +R
Sbjct: 122 GMMEREARQMNEAYFKHITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLA 243
SD I+ G+ T+L DDP LT R+N + P R+I+D + + L S +
Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGNT 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300
V + + D R DLK LL L GVTS+LVEGG V
Sbjct: 242 IVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVLG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-Y 354
S + +LVD ++++ + I+IG P+ E + FG DV + Y
Sbjct: 302 SLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLISGY 361
Query: 355 IGKN 358
+ K
Sbjct: 362 VIKE 365
>gi|254467350|ref|ZP_05080761.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
Y4I]
gi|206688258|gb|EDZ48740.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
Y4I]
Length = 365
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 186/362 (51%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D R+M+ AL R G NP+V C+IVK ++GRG T GG PHAE +AL +AG
Sbjct: 2 DTDHRYMALALSLGRRGQGNCWPNPAVGCVIVKGRRIVGRGWTKPGGRPHAETEALAQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPC+H G +PPCAQ +I+ G+ RVV + D D RVSG+G++ L GI
Sbjct: 62 EAARGATAYVTLEPCAHQGATPPCAQALIKAGVARVVAAIGDSDPRVSGQGIRMLRDAGI 121
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + HA + + R +TLK+A S D I S ITG ++ V
Sbjct: 122 RVDTGVWGAQAARDHAGFFLKTEQGRPLVTLKLASSFDGRIATGSGKSKWITGPEARRAV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +RA+ DA++VG GT ADDP LT R + E P+R+++ H L L ++ +TA
Sbjct: 182 HAMRARHDAVMVGGGTARADDPSLTVR-DLGVERQPVRVVISRHLDLPLMGQLARTAKKV 240
Query: 244 PVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
PV + + + + + D +L L G+T + EGG+A+
Sbjct: 241 PVWLCHGHGADQERIQAWEGLGAKLIPCASHGVQLDAVDVLQQLGQAGLTRVFCEGGSAL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S + LVD +I + + + IG G+PS + F V G D+ +
Sbjct: 301 AASLLAFDLVDELIGFTAGLGIGAEGLPSIGALGIGRLEEAPRFELVETRPLGGDILHRW 360
Query: 355 IG 356
Sbjct: 361 TR 362
>gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
Length = 384
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 130/371 (35%), Positives = 192/371 (51%), Gaps = 20/371 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 6 SWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L
Sbjct: 66 MAGEHARGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + + A+++P+++V+ P A +++ + + L +G+
Sbjct: 246 PLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G + M V
Sbjct: 304 NHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDE 363
Query: 344 DYFGSDVCLEY 354
G D L
Sbjct: 364 RKLGPDTRLIL 374
>gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541]
Length = 370
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 130/360 (36%), Positives = 184/360 (51%), Gaps = 8/360 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M ALR + + G TS NP V LIV+DG+V+ G G PHAE+ AL AG
Sbjct: 6 ALDESYMREALRLAEFARGRTSPNPLVGALIVRDGVVVANGWHRAAGEPHAEIHALRMAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ ARGA YVTLEPC+H+GR+ PCA+ +I G+ RVVV + DP+ V+GRG+ L GI
Sbjct: 66 DLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAAGI 125
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + +L KR +TLK A++ D I S ITG ++ +V
Sbjct: 126 EVVTGVLEDEARRQNETFLKWITTKRPFVTLKTAMTLDGKIASRTGASAWITGESARMRV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R DAIL+GIGT+LADDP LT RL H P+RI+LD + + +K++
Sbjct: 186 HEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHPLRIVLDSEARTPISAKLVTDGAAP 245
Query: 244 PVIIVTENDDPVLAL--AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI V+E DP + + + D+ LL L R TSL VEGGA S
Sbjct: 246 TVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGCLLDWLGERECTSLFVEGGAEANWS 305
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
F+ D + + + +++G P+P+ V + G D+ +
Sbjct: 306 FLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSPQTALRLGDVTVEQIGMDLLVTGYP 365
>gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 365
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 186/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I ++L++ +ILY + +IG PS + + K F + G D +
Sbjct: 302 IENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 361
>gi|227821532|ref|YP_002825502.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
gi|227340531|gb|ACP24749.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234]
Length = 367
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 181/362 (50%), Positives = 238/362 (65%), Gaps = 3/362 (0%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D RFM+AALR +R ++GLTSTNPSV C+IVKD ++GR VTA GG PHAE QAL +A
Sbjct: 5 TREDERFMAAALRLARRNLGLTSTNPSVGCVIVKDDTIVGRAVTAPGGRPHAETQALADA 64
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+ARGATAYVTLEPCSH+GR+PPC +I GI RVVVC+ DPD RV+GRG+ L G
Sbjct: 65 GEQARGATAYVTLEPCSHHGRTPPCVDALIASGIARVVVCLLDPDERVAGRGVVMLRDAG 124
Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD ++ EG+ L AYL RQ KR H+TLK+AVS D MIG G G V ITG +S+ Q
Sbjct: 125 IDVDLGVLRDEGERVLEAYLMRQRMKRPHVTLKLAVSADGMIGRKGEGQVRITGAVSRAQ 184
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V +LRA++DAILVG+GT ADDPELT RL GL+ SP+RI+LD L+++SK++++A
Sbjct: 185 VQVLRAETDAILVGVGTANADDPELTVRLPGLEARSPIRIVLDRRLDLAVESKLVRSARA 244
Query: 243 APVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
V ++ D P + + + + + LL L RG++SLLVEGGA A
Sbjct: 245 VLSFAVADSVLDAPAMTRRSTLEEAGVEVLNADTIYDLLIALASRGISSLLVEGGARAAR 304
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
F+++ LVD I+LY IGE GI SP + + F R +G+D+ +Y + C
Sbjct: 305 QFLDAGLVDRILLYTGPATIGEDGIRSPFDRMTVPAGFSLKRTARYGNDIFDDYERDSGC 364
Query: 361 LQ 362
Q
Sbjct: 365 SQ 366
>gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
Length = 367
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 117/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQASELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A + I + + L + V + VE G
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENEKLDLRELLAQLAQQHNVNQVWVEAGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATQK 364
>gi|320120555|gb|EFE28957.2| riboflavin biosynthesis protein RibD [Filifactor alocis ATCC 35896]
Length = 364
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 118/359 (32%), Positives = 168/359 (46%), Gaps = 11/359 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
F +M A+ ++ G S NP V +IVKD I+IG G G HAE +AL+
Sbjct: 3 FHETYMKTAIELAKKGEGYVSPNPLVGAVIVKDDIIIGSGYHTKYGGLHAEREALKNCRT 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
+GA+ YVTLEPCSHYG+ PPCA IIE GI V + DP+ V+G+G+Q L
Sbjct: 63 SPKGASMYVTLEPCSHYGKQPPCALAIIESGIDTVYIGSSDPNPEVNGKGIQVLRDANIK 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V +++ E + R ++TLK A++ D I S ITG ++ QVH
Sbjct: 123 VVTGLLKEECDSLNTFFFHYIATNRPYVTLKFAMTIDGKIASHSGKSQWITGESARAQVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R + AI+VG+GTV D+P L CR SP+RII D + ++SKI++T+ P
Sbjct: 183 RDRKRYQAIMVGVGTVFQDNPVLNCRTKE-NPVSPIRIICDTKLRTPMNSKIVQTSKEIP 241
Query: 245 VIIVTENDDPVLALAFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ T D + DL L+ L G+ SL VEGG +
Sbjct: 242 TYLATCCTDKSKHSPYEMYGCSILVTKQQNGHIDLNDLMQQLGKIGIDSLFVEGGGTLNW 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
S + LV+ I Y V+G + + + F F D+ LEY
Sbjct: 302 SLLQENLVNHIQCYIGNKVLGGQSAKTAILGTGFDTPNDSPAFKLSNIMCFDEDILLEY 360
>gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 380
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 17/369 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M AL + G T+ NP V ++VK+ ++ +G G PHAE ALE+AG
Sbjct: 6 KKDRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVAQGYHGRLGGPHAEAVALEKAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
EA G T YVTLEPC HYG++PPC IIE G++RVV+ DP +++G+G++ L Q GI
Sbjct: 66 REASGTTMYVTLEPCCHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAGI 125
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ ++E + + V ++ K +S D I S IT ++
Sbjct: 126 KVEVGLKKAEAEKQNEIFRKYIVTGLPYMIGKWGMSLDGKIATHTGDSRWITSEKARFDT 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LRA+ AI+VGIGTV ADDP LTCR P+RI++D H +LSL SK+++
Sbjct: 186 HRLRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPVRIVVDSHLRLSLQSKVLEKISET 245
Query: 244 PVIIVTENDDPVLALAFRKKNI-----------NIIYCDCRDLKKLLTILVGRGVTSLLV 292
P II T + + D+ +L+ +L RG+ S+LV
Sbjct: 246 PTIIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTSTGKVDIFELVKLLGQRGLDSVLV 305
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG + S I + D I+Y +VIG P+P+ + + +YFG
Sbjct: 306 EGGETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPVGGKGFQALKDSVMLNNMEYEYFG 365
Query: 348 SDVCLEYIG 356
+ +E
Sbjct: 366 DSIRIEAYP 374
>gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
15579]
gi|187772177|gb|EDU35979.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC
15579]
Length = 364
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 116/360 (32%), Positives = 185/360 (51%), Gaps = 15/360 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ ++ G + NP V +++KD +IG G Y G PHAEV AL EAGE+A+
Sbjct: 6 FYMEKALKLAKKGEGKVNPNPKVGAIVIKDNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + V+ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K + LK A + D I S ITG S+ +VH +R
Sbjct: 126 DIMEKESKELNEVFIKYITKKEPFVVLKTASTLDGKIATKKGESKWITGEESRYRVHQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGIGT++ D+P LT R+ + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIEEGRSPKAI--IVDSNLRIPLESKILETINARSIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T L+ +N LKKL+ L + S+L+EGG+ +
Sbjct: 244 ATTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQYLGEEEIDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + +IG + + ++ + + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIIGGQDSKTMIGGTGVDNLKDMFKLQNLNFEKIGEDILIEGY 363
>gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
Length = 384
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 19/376 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + R+M+ ALR +R + T+ NP V C++VK+G VIG G G PHAE+ AL
Sbjct: 2 MSPTPP-ERWMARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSH GR+ PCA ++E G+ RVVV + DP+ +V+GRG++ L
Sbjct: 61 RNAGEAARGATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q GI V+ + L++ ++ R + +K+A+S D M S ITG +
Sbjct: 121 QAGIEVEEGVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLS 231
+ +V LRA+S ++ G+ +V+ D+ LT R + PMR+++D +L
Sbjct: 181 RREVQRLRARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRG 286
L + ++ V V +DD + ++ + L +
Sbjct: 241 LAAACLREPGRTLVATVDGHDDEHREKLEQAGAEVVVLPAEEGGRVDLEALLSYLASHEE 300
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVR 342
+L+E GA +A + +++ LVD + L+ + ++G P L ++
Sbjct: 301 ANEVLLETGATLAGAMLDAGLVDEMQLFVAPTLLGGEARPLFELPGLTRMDEQRPLDIRD 360
Query: 343 RDYFGSDVCLEYIGKN 358
G D + + +
Sbjct: 361 IRAVGDDWRITAVPRR 376
>gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. MR-4]
gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. MR-4]
Length = 381
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 184/371 (49%), Gaps = 16/371 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + + L+ +++E +T+K+A S D ++ S ITG +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFK 229
+ V LR ++ A++ GI TVLADDP L R + Q P+R+ILD +
Sbjct: 181 RRDVQRLRLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + + ++ ++ + L + + D R L +G+
Sbjct: 241 MPITAALLAIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLGKSCN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
+L+E GA +A +FI L D ++LY++ ++G G + V
Sbjct: 301 QVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLVDER 360
Query: 345 YFGSDVCLEYI 355
G+D
Sbjct: 361 KVGADTRFTLR 371
>gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330]
Length = 360
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 123/362 (33%), Positives = 184/362 (50%), Gaps = 10/362 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ D + M AL + TS NP V C+I +IG+G G PHAEV A+
Sbjct: 3 TFNPQDTQHMQRALELAWQGRFSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIR 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L
Sbjct: 63 QAGELARGATAYVTLEPCSHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQA 122
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI+V++ +E E + +L+R R ++LKIA S D ++ S ITG ++
Sbjct: 123 AGIMVEQGLLEHEARQLNRGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V + RAQS A+L GIGTVLAD+P L R P+R++LD + S II+
Sbjct: 183 ADVQIQRAQSCAVLTGIGTVLADNPRLNVRDFP-TVRQPLRVVLDSQLRTPKSSHIIQDG 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I + + A L ++L L RG+ L++E G+ +A
Sbjct: 242 QRTLIITTSPDTQKFATYA---NVEISKQPAPISLPEVLHELAQRGIGELMIEAGSHLAS 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ L+D I+ Y++ ++G+ + L + + V D G D+
Sbjct: 299 AFLQQDLLDEIVYYQAPKLLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDIKWVLQ 358
Query: 356 GK 357
+
Sbjct: 359 KR 360
>gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP9-BS68]
gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP9-BS68]
gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17570]
Length = 366
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ V
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
TK-6]
Length = 361
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 139/360 (38%), Positives = 189/360 (52%), Gaps = 7/360 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D FM AL ++ GLT NP+V C+IVKDG +I G G PHAE ALE+
Sbjct: 2 MRETDHHFMRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEK 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +A G+T YVTLEPC+HYGR+PPC II ++RVV+ DP+ VSGRG+Q L
Sbjct: 62 AGTQAEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E E + + T +KR +ITLK+A S D I S IT S+
Sbjct: 122 GIDVCVGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRT 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LRAQ+ A+LVGI TVL DDP LT R + P+R++LDP+ ++ + SK+++
Sbjct: 182 FAHRLRAQATAVLVGINTVLRDDPSLTVRHIPWES-QPIRVVLDPNLRIPITSKLVREKT 240
Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+II +L K + L+++L L + LLVEGGA
Sbjct: 241 AKTLIITASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQT 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL--EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
SFI L D + ++ + I+IGEG + + K M FG DV LEY
Sbjct: 301 ITSFIKEDLYDRLFIFLAPILIGEGIGIGDIGTSKLLDAKRHMLKSIYRFGDDVGLEYKK 360
>gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002]
Length = 364
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 136/360 (37%), Positives = 184/360 (51%), Gaps = 7/360 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D M+ ALR + + T+ NP V C++V+DG V+G G G PHAEV AL
Sbjct: 1 MTFSAVDHAMMAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV + DP V+GRGL L
Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLR 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +E+E + +L+R R +TLK A S D + S ITG +
Sbjct: 121 AAGIEVAVGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRA+S AIL G GTVLADDP+LT R P R+++D + S ++I +
Sbjct: 181 RRDVHRLRARSCAILTGSGTVLADDPQLTVR-EVFTPRQPRRVVVDSRLQTSPGARIYRD 239
Query: 240 ALLAP-VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + DL LL L GV L+VE GA +
Sbjct: 240 GETILATAVADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAGAGL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + + LVD I+LY + ++G+ LE ++N + G DV LE
Sbjct: 300 NGALLQAGLVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVRLEL 359
>gi|57238845|ref|YP_179981.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
Welgevonden]
gi|57160924|emb|CAH57829.1| riboflavin biosynthesis protein RibD [Ehrlichia ruminantium str.
Welgevonden]
Length = 365
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 7/354 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+
Sbjct: 1 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L
Sbjct: 61 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 120
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V +M++E + + +++ R IT+KIA + D I + S IT +++
Sbjct: 121 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA
Sbjct: 181 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ P I+T + + A I+ + K+L G+T L VEGG+ +
Sbjct: 241 VIPTYILTNSIEETKLGAANYLCIDSEDNFLSESMKVLVK--KVGITRLFVEGGSILITE 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ + LVD II RS + G IP+ + E NF V YF DV
Sbjct: 299 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 352
>gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6]
gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP11-BS70]
gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
MLV-016]
gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CGSP14]
gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
BS455]
gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus
pneumoniae AP200]
gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6]
gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39]
gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP11-BS70]
gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CGSP14]
gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
MLV-016]
gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae INV200]
gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
BS455]
gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus
pneumoniae AP200]
Length = 366
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
51599]
gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
51599]
Length = 385
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 121/364 (33%), Positives = 177/364 (48%), Gaps = 13/364 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D R M A+ + V T NP V C+IV+DG V+G G G PHAEV AL++A
Sbjct: 3 TEDDRRAMQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPCSH+GR+ PCA ++E G+ RVV ++DP+ V+G+GL L G
Sbjct: 63 GERARGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAG 122
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +E E + +++R R + LK A S D I + S ITG ++
Sbjct: 123 IDVRCGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI------ 236
H RA++ AIL G GTV AD+P LT R E P+R+++D ++S + I
Sbjct: 183 GHAWRARASAILTGSGTVQADNPALTVRHVA-TERQPVRVLVDARLQVSEHAAIFGPGET 241
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ P + +L R + DL L+ + G + VE GA
Sbjct: 242 WVAHAMPPDWPDDGHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVEAGA 301
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ + I + VD ++LY + ++G G+P+ + G D+ L
Sbjct: 302 GLNAALIQAGCVDELLLYVAPALLG-QGLPAFALPAVPGLDDRIRLAWREATPVGDDLRL 360
Query: 353 EYIG 356
Sbjct: 361 RLRV 364
>gi|2493562|sp|P70814|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens]
Length = 371
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 171/361 (47%), Gaps = 9/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M+ A+ +R G T NP V ++VK ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGS 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GA YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L + GI
Sbjct: 61 LAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIE 120
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D S IT ++
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R ILVG GTV AD+P LTCR P+R+ILD + + ++
Sbjct: 181 QYRKSHQRILVGAGTVKADNPSLTCR-LPDAVKQPVRVILDTKLTVPETANVLTDGAAPT 239
Query: 245 VIIV--TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + L + + D + ++L+IL G+ S+ VEGGA+V SF
Sbjct: 240 WIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
+ + D + Y + I+IG PS + + + + G D+ L I K
Sbjct: 300 VKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPK 359
Query: 358 N 358
+
Sbjct: 360 D 360
>gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
Length = 368
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 108/358 (30%), Positives = 170/358 (47%), Gaps = 8/358 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D + MS A+ ++ + T+ NP+V C+I +DG ++G G G PHAEV AL
Sbjct: 3 TFTSQDFKMMSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALR 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L
Sbjct: 63 MAGEKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRD 122
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + + I L+ ++++ + LK+A S D +A S IT ++
Sbjct: 123 AGIEVEVGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RAQS AIL TV+ D+ L R S + + + + +
Sbjct: 183 QDVQKYRAQSGAILSTSKTVIDDNASLNVR-WDDLPQSVQSHYPEQQLRQPVRVILDRQG 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKN--INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
LL P + + + L +A + + + L VE GA +
Sbjct: 242 LLTPELKLFNTEGGRLIVAEQGDVELQLNTEHQVDLRATFADLANKHNINHLWVEAGATL 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
A S I + LVD ++LY + ++G LE GSD+ +
Sbjct: 302 ASSLIKADLVDELVLYLAPKIMGSDGRGLLGALGLESMAEVIELDIKDIRQVGSDIRI 359
>gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC
700669]
gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae ATCC 700669]
Length = 366
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--RKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155]
gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella baltica OS155]
Length = 384
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 129/371 (34%), Positives = 191/371 (51%), Gaps = 20/371 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 6 SWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L
Sbjct: 66 MAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+L DDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + + A+++P+++V+ P A +++ + + L +G+
Sbjct: 246 PLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G + M V
Sbjct: 304 NHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDE 363
Query: 344 DYFGSDVCLEY 354
G D L
Sbjct: 364 RKLGPDTRLIL 374
>gi|229524273|ref|ZP_04413678.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae bv. albensis VL426]
gi|229337854|gb|EEO02871.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae bv. albensis VL426]
Length = 367
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 117/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAAELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ + +L R ++ LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R + L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + L + V + VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQVWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|325295467|ref|YP_004281981.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065915|gb|ADY73922.1| riboflavin biosynthesis protein RibD [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 362
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 117/359 (32%), Positives = 178/359 (49%), Gaps = 9/359 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +FM A+ + G T NP+V +IVKDG VI G G PHAE A+ +AG
Sbjct: 2 TQDEKFMKLAISEAYKAKGRTLPNPAVGAVIVKDGKVIATGYHERAGLPHAESVAISKAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A+GAT YVTLEPC+HYG++PPC++ II+ GI+RVVV + DP+ V+ G++ L GI
Sbjct: 62 EKAKGATLYVTLEPCNHYGKTPPCSEKIIKAGIKRVVVGIRDPNP-VARGGVEKLKNAGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L EKR ++LK+A + D I S IT S+ V
Sbjct: 121 EVKVGVLEKECFELIDDFIVNLKEKRPFVSLKLAATLDGKIADYKGNSKWITSEESRKLV 180
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H+LR+ +A++VGIGTVL DDP L R P I++DPH K+ L ++IK+
Sbjct: 181 HILRSYHNAVMVGIGTVLKDDPLLNVRKVPADV-QPKAIVVDPHLKIPLSCRLIKSRSED 239
Query: 244 PVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+II T K + L + G+ S++ EGG+ +A
Sbjct: 240 LIIITTRESMLSDKALILKGKGVKLLEAGENSIELKIALEKLKGEFGIYSVMCEGGSKLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
S + L+D L+ + ++G G+ +E + +D+ ++
Sbjct: 300 WSLLEGNLIDKFYLFYAPKILGGKGMSMFDGSFSIEDAHQIRLFSINSVSNDLLIKAYR 358
>gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33]
Length = 369
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 110/365 (30%), Positives = 190/365 (52%), Gaps = 13/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG
Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI
Sbjct: 64 ENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIEDAGI 123
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 124 EVKLGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + +++K +
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
+II + ++ + + K + K+ IL G + S+L+EGG+
Sbjct: 244 NDGKAIIITSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + ++D+ ++ + +IG+ + + + + +G ++
Sbjct: 304 GLISTAFKENIIDAAEIFIAPKIIGDNSAIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363
Query: 352 LEYIG 356
+E+
Sbjct: 364 IEFEN 368
>gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Bacillus cereus E33L]
gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Bacillus cereus E33L]
Length = 367
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 123/360 (34%), Positives = 186/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDVEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I ++L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 302 IENKLMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQIGKDYRFIGYPE 361
>gi|260767835|ref|ZP_05876770.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio furnissii CIP 102972]
gi|260617344|gb|EEX42528.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio furnissii CIP 102972]
Length = 369
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 110/369 (29%), Positives = 180/369 (48%), Gaps = 12/369 (3%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L
Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + + L+ ++++ + LK+A S D +A S IT
Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ A+L TVLAD+ LT R L H + H + + + + +
Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQA-TYAEQHLRQPVRAILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
L + + D VL +A + ++ + + L + + + VE G
Sbjct: 240 QHQLHRELALYATDSAVLRVANQDADVCVALDEHGQLNLREVLGALAKHHNINHIWVEAG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
A +A S + LVD +++Y + ++G G L + G D+
Sbjct: 300 ATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALNIQDCRMVGPDIR 359
Query: 352 L--EYIGKN 358
+ K+
Sbjct: 360 VVATLERKD 368
>gi|121729759|ref|ZP_01682198.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
gi|147673692|ref|YP_001217785.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
gi|121628510|gb|EAX60996.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52]
gi|146315575|gb|ABQ20114.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
gi|227014167|gb|ACP10377.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395]
Length = 367
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 179/365 (49%), Gaps = 9/365 (2%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A
Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ +E++ ++ +L R + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L P + + + PVL +A I+ + L + V L VE G+
Sbjct: 240 QHQLHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQLWVEAGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 300 QLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IATPK 364
>gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 369
Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 178/367 (48%), Gaps = 15/367 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D ++MS AL +R T+ NP V ++VK G+V+G G G PHAEV AL
Sbjct: 2 FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYALHA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V GRGL+ LS+
Sbjct: 62 AGDNARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI D + + L+ +++ +T+K+ S D MA S IT ++
Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARR 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA+ DA+L TVLAD+ LT R + L + L +
Sbjct: 182 DVQRLRARHDAVLSSAETVLADNASLTVRWDELPASVKA-SYPKETLRQPLRVIVDSQNR 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK---------KLLTILVGRGVTSLLV 292
L P + + +++ PVL + + ++ L +L + V S+LV
Sbjct: 241 LTPDLPLLQSEGPVLLARHKASGEWPAWVQQLEVPLLDGKLDLVSLFMLLAKQNVNSVLV 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G + + ++ LVD ++LY++ ++G+ G L + G
Sbjct: 301 EAGPRLCGALLDKGLVDDLVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLNIKDVRMVGP 360
Query: 349 DVCLEYI 355
D+ +
Sbjct: 361 DIRITAR 367
>gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1087-00]
gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1087-00]
Length = 366
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 182/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
CLQE
Sbjct: 360 IYPCLQE 366
>gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
Alaska E43]
gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str.
Alaska E43]
Length = 366
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 113/368 (30%), Positives = 180/368 (48%), Gaps = 15/368 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + + ++M AL ++ G + NP V LIVKD +IG G G HAEV A+
Sbjct: 1 MKL--LNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGSGYHEKYGEAHAEVNAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A + G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSGR ++ L
Sbjct: 59 NNATKSLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLK 118
Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I V + E + K +++ + LK A+S D I + S IT S
Sbjct: 119 DNDIEVIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEES 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ HLLR + AI+VGI T++ D+PELTCR+ +P+R+I+D + ++ L SK++
Sbjct: 179 RRDGHLLRNKLSAIMVGINTIIEDNPELTCRIEN--GKNPIRVIVDSNLRIPLKSKVVNN 236
Query: 240 ALLAPVIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ ++ T+ D + K DLK+L+ L + S+L+EGG
Sbjct: 237 SDKLTIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGG 296
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350
+ S + +VD + Y + ++G S + + + D+
Sbjct: 297 GTLNFSALEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDI 356
Query: 351 CLE-YIGK 357
+E YI K
Sbjct: 357 VIEGYINK 364
>gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
Length = 363
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 123/359 (34%), Positives = 191/359 (53%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL+ +R G T NP V +IV D ++G G G PHAE+ AL AGE+
Sbjct: 4 HEFYMNIALQNARSTKGQTEPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI V
Sbjct: 64 AKGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEV 123
Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E + + V K+ ++LK A++ D I A S IT ++ VH
Sbjct: 124 ITGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR ++ ILVG+ TV+ D+PELT R+ G + P+RI++D ++ L+SK+ +L
Sbjct: 184 LRHETAGILVGVNTVIKDNPELTTRIEGGRS--PIRIVMDSKLRMPLESKLATDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHSF 302
I ++ K+ + + D L +L G V+SLL+EGG V +F
Sbjct: 242 IFTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
+ +RL+D ++LY + + G P+ LE +EK + V + G D
Sbjct: 302 LENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERLSVTSIGKDFKFVGYP 360
>gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP19-BS75]
gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP23-BS72]
gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC0288-04]
gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
1974]
gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI
1974M2]
gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP19-BS75]
gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP23-BS72]
gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC0288-04]
gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA]
gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae INV104]
gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41301]
gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47901]
Length = 366
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|269103255|ref|ZP_06155952.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163153|gb|EEZ41649.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Photobacterium damselae subsp. damselae CIP
102761]
Length = 378
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 183/367 (49%), Gaps = 16/367 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+FD + MS A+ ++ T+ NP+V C+IV +G ++G G G PHAEV AL
Sbjct: 2 FSAFDHKMMSRAIALAKKGRFTTAPNPNVGCVIVNNGQIVGEGFHYRAGLPHAEVFALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++ARGATAYVTLEPCSHYGR+PPCA +IE GI RVV + DP+ +V+G G+ L
Sbjct: 62 AGDKARGATAYVTLEPCSHYGRTPPCALALIEAGISRVVCAMVDPNPKVAGNGVTLLQNA 121
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + + L+ ++ ++ LK+A S D +A S ITG ++
Sbjct: 122 GVTVEVGLLEQDAKALNLGFIKAMQTGMPYVQLKMASSLDGRTALANGESKWITGPQARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKL 230
V RAQ+ AIL TV+ADDP + R L + P+R+I+D +L
Sbjct: 182 DVQHFRAQAGAILSTSATVIADDPSMNIRWQELPFYIQQQYPKSELRLPIRVIIDSQNRL 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
S D ++ + + D+ + DL +LL LV G+ +
Sbjct: 242 SPDYQLFHLPGKTLLARCEQGDEVWPDSVTQLIISRTPDSSQLDLHELLQQLVKLGIYHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A + + ++LVDS ILY++ ++G L N
Sbjct: 302 WVEAGAGLAGALVQNQLVDSFILYQAPKLMGAEARGVMNLPQLTAMGQVPNVSISDLRMV 361
Query: 347 GSDVCLE 353
G+D+ +
Sbjct: 362 GTDIRIT 368
>gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|63258396|gb|AAY39492.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Pseudomonas syringae pv. syringae B728a]
Length = 366
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 126/360 (35%), Positives = 177/360 (49%), Gaps = 14/360 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AGE ARGA
Sbjct: 1 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAGELARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI V +
Sbjct: 61 TAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQCGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
ESE + +L R ++ +K+A+S D MA S ITG +++ V LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLDSKIIKT 239
S +L G TVLAD LT R + +P+R+++D ++ LD+ +
Sbjct: 181 SSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQA 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V + + DL++L+ L RGV +LVE G +A
Sbjct: 241 GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMDELAARGVNEVLVEAGPRLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F LVD L+ + +G P PL + V G+D + +
Sbjct: 301 GAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGNDWRVIALP 360
>gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 370
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 144/365 (39%), Positives = 206/365 (56%), Gaps = 10/365 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D M AAL ++ +G NP+V C+IV DG V+GRG T GG PHAE +AL
Sbjct: 5 TISDGDRAHMRAALALAKRGLGNVWPNPAVGCVIVADGRVVGRGWTQPGGRPHAETEALA 64
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG ARG TAYVTLEPCSH+G++PPCA+ ++ GIRRVVV + DPD RV+GRG+ L
Sbjct: 65 MAGALARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQA 124
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G +V +M E +L++ R +T+K+A + D I G S ITG ++
Sbjct: 125 AGLSVVTGVMAEEAAELNAGFLSKVTRGRPLVTVKLATTLDGRIATHGGESRWITGAAAR 184
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
HLLRA++DAI+VG GTVLADDPELTCRL GL E SP+RI++D +L L SK++ TA
Sbjct: 185 QAGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRIVVDGRLRLPLTSKLVSTA 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVEGG 295
++T+ +++ + + + L R G+T +LVEGG
Sbjct: 245 NDVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQAMRVLAESGITRVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
A + + + LVD ++ +R+ V+G G+P+ ++ F CV G+D+
Sbjct: 305 AHLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVSFGVDHLSQMPGFECVDVRRIGADLV 364
Query: 352 LEYIG 356
Y
Sbjct: 365 ENYRK 369
>gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
DSM 684]
gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans
DSM 684]
Length = 364
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 121/356 (33%), Positives = 183/356 (51%), Gaps = 14/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R +G T+ NP V +IV+DG V+GRG G PHAEV AL +A ++ARGA
Sbjct: 1 MQIALDLARKALGRTTPNPPVGAVIVRDGQVVGRGFHPKAGEPHAEVFALRDAADQARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
AYVTLEPCSH+GR+PPC + +I G+ RV V + DP+ +VSG+G++ L G+ V+ +
Sbjct: 61 DAYVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEVGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E++ + + ++ + R LK A++ D S IT S+ VH LR Q
Sbjct: 121 LETQCRRLIAPFIKHMISGRPLFILKSALTLDGRTATRTGHSQWITSARSREHVHRLRDQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI+VG GT L D+P LT RL H P+RI++D +L S +I +P +VT
Sbjct: 181 VDAIMVGSGTALRDNPRLTTRLTP-PGHDPIRIVVDSRLQLPETSHLINHQSASPTWVVT 239
Query: 250 ENDDPVLALAFRKKNINIIYCD-------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + + + DL L +L R + S+LVEGG+ + S
Sbjct: 240 VAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLGQRDIQSVLVEGGSVLNQSL 299
Query: 303 INSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
++ L+D +++Y + ++G ++ R G DV LE
Sbjct: 300 FSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQLRDFRVTCLGDDVLLE 355
>gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus polymyxa SC2]
gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Paenibacillus polymyxa SC2]
Length = 366
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 180/365 (49%), Gaps = 13/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AG
Sbjct: 2 NTHEKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI
Sbjct: 62 EHAQGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGI 121
Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + + V KR IT+K AV+ D I S IT ++ V
Sbjct: 122 EVIVGVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR + ILVG+ TV+ D+P+LT RL +P+RIILD ++ LD+++I
Sbjct: 182 HRLRHEHVGILVGVQTVIHDNPQLTTRLPE--GRNPIRIILDSKLRIPLDARVITDGEAP 239
Query: 244 PVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
I D + Y + +L ++L IL V+S+ VEGGA V
Sbjct: 240 TWIFTGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDILGAAEVSSVFVEGGAEV 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
SF+ L D ++LY + ++G P L + + G D +E
Sbjct: 300 NASFVQQGLADKLVLYIAPKLVGGRSAPGFLGGEGVSAMSDAVALQDLSVTQVGVDWKIE 359
Query: 354 YIGKN 358
+
Sbjct: 360 GYFER 364
>gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
13528]
gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM
13528]
Length = 372
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 186/364 (51%), Gaps = 13/364 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D ++M AL+ + G + NP V +IVK+G +IG+G + G HAEV AL
Sbjct: 1 MEKENTDEKYMKEALKLALLGKGFVNPNPLVGAVIVKNGKIIGKGYHRFFGGAHAEVYAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ A+GA YVTLEPCSHYG++PPCA+ I+E GI++VV+ DP+ VSGRG++ L
Sbjct: 61 REAGDNAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ I V + + ++ ++ + + LK V+ D I S ITG S
Sbjct: 121 DENIEVVTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLDGKIATVSGESKWITGEKS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +VH +R + AI+VG+GTV+ DDP LT RL + SP +I+D ++ ++S+I KT
Sbjct: 181 RLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEEKCK-SPKAVIVDSKLRVPVESQIFKT 239
Query: 240 ALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ +II A+ DLK L L G+ S+LVE
Sbjct: 240 SREREIIIACTEKFDKVKAESLKAMGVNIVVCTENKEGRVDLKYLTKKLGEMGIDSVLVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGS 348
GG+ + S + S +V+ +I + + ++G + + + + G
Sbjct: 300 GGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSVEGYGIGNLSDSIKLKDICAENVGE 359
Query: 349 DVCL 352
D+ +
Sbjct: 360 DIMI 363
>gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
str. JGS1721]
gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D
str. JGS1721]
Length = 366
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ +F+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGVSNVLDAFEFPEVNLKNFDKDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
Length = 384
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 20/371 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL
Sbjct: 6 SWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALR 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L
Sbjct: 66 MAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRD 125
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD + + L+ +++E +T+K+A S D ++ S ITG S+
Sbjct: 126 AGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKL 230
V LR +S A++ GI T+LADDP L R Q P+R+ILD +L
Sbjct: 186 RDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL 245
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGV 287
L + + A+++P+I+V+ P A +++ + + L +G+
Sbjct: 246 PLSAACL--AIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQSC 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
+LVE GA +A +F+ L D ++LY++ ++G G + M V
Sbjct: 304 NHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDE 363
Query: 344 DYFGSDVCLEY 354
G D L
Sbjct: 364 RKLGPDTRLIL 374
>gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
SM101]
gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens
SM101]
Length = 365
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 120/361 (33%), Positives = 176/361 (48%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVK G +IG G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGEGYHEFFGGDHAEINAINSSVK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ + VVV DP+ VSG G++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD K+ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLKIPLDSEILKNQSE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ SF+ ++ V+ I + + V G +P+E + F V F +D+ +
Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKTFHNDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
str. 657]
gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf]
gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4
str. 657]
Length = 365
Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats.
Identities = 116/361 (32%), Positives = 186/361 (51%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M L+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+
Sbjct: 6 FYMEKTLKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++++V +R
Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGI TV+ DDP LT R+ G + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEGGRSPKAI--IVDSNLRIPLESKILETLSKRAIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T + +N L KL+ L GV S+L+EGG+ +
Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMEYLGTEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD I+ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|190572771|ref|YP_001970616.1| putative deaminase [Stenotrophomonas maltophilia K279a]
gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a]
Length = 361
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 122/360 (33%), Positives = 177/360 (49%), Gaps = 7/360 (1%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D M+ ALR + T NP V C+I V+G+G G PHAEV AL
Sbjct: 4 SFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L
Sbjct: 64 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V M ++ + +L+R R + +K+A S D MA S ITG ++
Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA++ AIL G TVLADDP LT RL + P+R++LD + ++ +
Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRVREG- 242
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
AP + + + A + DL +L +L RG+ + E GA +A
Sbjct: 243 -GAPTLYMHDAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAG 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + +D ++LY++ ++G+ G P + ++ V + G D+ L
Sbjct: 302 ALLRGGWMDELLLYQAPTLLGDNGRPLLAGLGINAMDQQRRLRVVDQRQVGEDIRLLLRP 361
>gi|255747035|ref|ZP_05420980.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholera CIRS 101]
gi|262161421|ref|ZP_06030531.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae INDRE 91/1]
gi|255735437|gb|EET90837.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholera CIRS 101]
gi|262028732|gb|EEY47386.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae INDRE 91/1]
Length = 365
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 8/362 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +
Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E++ ++ +L R + LK+A S D +A S IT ++
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDRQHQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P + + + PVL +A I+ + L + V L VE G+ +A
Sbjct: 241 LHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQLWVEAGSQLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 301 QSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIAT 360
Query: 356 GK 357
K
Sbjct: 361 PK 362
>gi|148976617|ref|ZP_01813304.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
gi|145963968|gb|EDK29226.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3]
Length = 367
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 110/361 (30%), Positives = 181/361 (50%), Gaps = 10/361 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
M S D + MS A+ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV
Sbjct: 1 MSNFSPLDFQMMSRAIHLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVH 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ AG++A+GAT YVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++
Sbjct: 61 AMRMAGDKAKGATVYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKM 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI V+ + + + L+ ++++ + LK+A S D +A S IT
Sbjct: 121 LRDAGIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ V RA++ A+L TV+ D+ L R L S + + + + +
Sbjct: 181 AARRDVQNYRAKAGAVLSTSQTVIDDNASLNVRWAELPS-SAQAHYAEANVRQPVRVILD 239
Query: 238 KTALLAPVIIVTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ L P + + ++ PVL A I DL +L+ L + + VE G
Sbjct: 240 RQNQLRPELKLYQSPTPVLRVAEASADIEIGTTETGQLDLHELMCQLPANHIDHIWVEAG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A +A S I ++LVD +ILY + ++G G L + G D+
Sbjct: 300 ATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIR 359
Query: 352 L 352
+
Sbjct: 360 I 360
>gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
Length = 373
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/357 (33%), Positives = 172/357 (48%), Gaps = 9/357 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI
Sbjct: 72 AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + + +L ++TLK A S D I + S IT ++
Sbjct: 132 EVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDA 191
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R +ILVG+GTV AD+P LTCR P+R+ILD + D+K+I +
Sbjct: 192 QQYRKTHQSILVGVGTVKADNPSLTCR-LPNVTKQPVRVILDTVLSIPEDAKVICDQIAP 250
Query: 244 PVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I T D L+ NI + + + +L IL G+ S+ VEGG+AV S
Sbjct: 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
F+ II Y + +IG PS + + G D+ L
Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLT 367
>gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2]
Length = 404
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 111/365 (30%), Positives = 173/365 (47%), Gaps = 18/365 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA 63
D +M+ A+R ++ TS NP V C+IV + IG+G G PHAE+ AL EA
Sbjct: 36 EIDYYWMAKAIRLAQKGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREA 95
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV+ + DP+ VSG G++ L G
Sbjct: 96 GKKAKGATAYVTLEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAG 155
Query: 124 IIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + S E ++ R + + ++ +K+ +S D I + S ITG ++
Sbjct: 156 IEVSSDIMSAESAALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRD 215
Query: 183 VHLLRAQSDAILVGIGTVL--------ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
V RAQS A+L G GTV D P+RII++ LS D
Sbjct: 216 VQHYRAQSCAVLTGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQPVRIIVNSADDLSRDY 275
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + V+ + R+ D+ KL+ L + VE
Sbjct: 276 RCMNDGHPTFVVSTQNSA----DTDNRQHLTVDAMNGKVDISKLMLQLGDMQFNEVWVEA 331
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
G +A + + + VD +I Y++ ++G+ G+ E + G+D+
Sbjct: 332 GPGLAGALLIAGEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGNDI 391
Query: 351 CLEYI 355
L Y+
Sbjct: 392 KLRYL 396
>gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
Length = 375
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 115/368 (31%), Positives = 175/368 (47%), Gaps = 12/368 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D R+M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL
Sbjct: 6 SFSEDDKRYMARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNALT 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE A+GATAYVTLEPCSHYGR+PPCA+ + G+++V+ + D + +V+G+GL+ L+
Sbjct: 66 MAGENAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILAD 125
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E++ + + R + +T K+A S D + S ITG ++
Sbjct: 126 AGIEVAYGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAAR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V L RAQS AIL G TVL DD +L R L P + L ++ +DS+ T
Sbjct: 186 QDVQLYRAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTP 245
Query: 241 LLA-------PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
LA +I T+ D F K+ + DL +L L ++ +E
Sbjct: 246 DLALFSIQSEVIIFTTKVDKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVWLE 305
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
GA +A L+D + Y + ++G L N G D
Sbjct: 306 AGATLAGKMTELDLIDEFVFYIAPKLMGSDAKSLLNFPELMSMQNTINLTFNECVPIGDD 365
Query: 350 VCLEYIGK 357
+ + + K
Sbjct: 366 LRITALKK 373
>gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
str. JGS1495]
gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C
str. JGS1495]
Length = 365
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ +F+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|58578775|ref|YP_196987.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
Welgevonden]
gi|58417401|emb|CAI26605.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
Welgevonden]
Length = 370
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 7/354 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+
Sbjct: 6 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L
Sbjct: 66 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 125
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V +M++E + + +++ R IT+KIA + D I + S IT +++
Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA
Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ P I+T + + A I+ + K+L G+T L VEGG+ +
Sbjct: 246 VIPTYILTNSIEETKLGAANYLCIDSEDNFLSESMKVLVK--KVGITRLFVEGGSILITE 303
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ + LVD II RS + G IP+ + E NF V YF DV
Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 357
>gi|298488889|ref|ZP_07006913.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 366
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 176/360 (48%), Gaps = 14/360 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AGE ARGA
Sbjct: 1 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAGELARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI V +
Sbjct: 61 TAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
ESE + +L R + +I +K+A+S D MA S ITG +++ V LRAQ
Sbjct: 121 LESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLDSKIIKT 239
S +L G TVLAD LT R + P+R+++D ++ LD+ +
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPFFQA 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V + + DL+KL+ L RGV +LVE G +A
Sbjct: 241 GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLVEAGPRLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F LVD ++ + +G P PL + V+ G+D + +
Sbjct: 301 GAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGNDWRVIALP 360
>gi|24374975|ref|NP_719018.1| riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
gi|24349701|gb|AAN56462.1|AE015783_5 riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1]
Length = 381
Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 123/374 (32%), Positives = 185/374 (49%), Gaps = 16/374 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D + MS A++ +R T NPSV C+IV D ++G G G PHAEV AL
Sbjct: 1 MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L
Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + + L+ +++E +T+K+A S D ++ S ITG +
Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFK 229
+ V LR +S A++ GI TVLADDP L R + Q P+R++LD +
Sbjct: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + + + ++ + L + + + R L +G+
Sbjct: 241 MPITAALFAIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLGKSCN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344
+L+E GA +A +FI S L D ++LY++ ++G G + V
Sbjct: 301 QVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLVDER 360
Query: 345 YFGSDVCLEYIGKN 358
G+D ++
Sbjct: 361 KVGADTRFTLRLES 374
>gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551]
Length = 363
Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 121/359 (33%), Positives = 191/359 (53%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL+ ++ G T NP V +IV D ++G G G PHAE+ AL AGE+
Sbjct: 4 HEFYMNIALQNAKATKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI V
Sbjct: 64 AKGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEV 123
Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E + + V K+ ++LK A++ D I A S IT ++ VH
Sbjct: 124 ITGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR ++ ILVG+ TV+ D+PELT R+ G + P+RI++D ++ L+SK+ +L
Sbjct: 184 LRHETAGILVGVNTVIKDNPELTTRIEGGRS--PIRIVMDSKLRMPLESKLATDSLAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHSF 302
+ ++ K+ + + D L +L G V+SLL+EGG V +F
Sbjct: 242 VFTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356
+ +RL+D ++LY + + G P+ LE +EK + V + G D
Sbjct: 302 LENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERLSVTSIGKDFKFVGYP 360
>gi|163742965|ref|ZP_02150348.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
2.10]
gi|161383648|gb|EDQ08034.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
2.10]
Length = 372
Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 134/362 (37%), Positives = 188/362 (51%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
DARFMS AL R +G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG
Sbjct: 9 PEDARFMSLALSLGRRGLGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAG 68
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ ARGAT YV+LEPCSH G++PPCAQ +I G RVV ++D D RVSG G L GI
Sbjct: 69 DLARGATVYVSLEPCSHTGKTPPCAQALINAGAARVVAAIEDSDPRVSGHGFAMLRDAGI 128
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + S+ + HA + + R +TLK+A S D I A S ITG ++ V
Sbjct: 129 PVTTGVCSDVAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAV 188
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +RA+ DA++VG GT ADDP LT R + P+R+++ H L L ++ ++A
Sbjct: 189 HAMRARHDAVMVGGGTARADDPSLTVR-DLGVARQPVRVVISRHLDLPLMGQLARSARDI 247
Query: 244 PVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
PV I L + D +L L G+T + EGG+A+
Sbjct: 248 PVWICHGAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSAL 307
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S + LVD +I + + + IG G+ S L+ F + G+D+ +
Sbjct: 308 AASLLAQDLVDELIGFTAGLGIGGDGLSSIGSLGLDTLAEAPRFDLIDVRPVGADIQHRW 367
Query: 355 IG 356
Sbjct: 368 TR 369
>gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio metschnikovii CIP 69.14]
gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio metschnikovii CIP 69.14]
Length = 369
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 102/362 (28%), Positives = 165/362 (45%), Gaps = 10/362 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D + M+ A++ ++ T+ NP V C+I + G ++G G G PHAEV A
Sbjct: 2 MSNFSAVDYQMMARAIQLAQRGRFTTAPNPKVGCVITQQGRIVGEGFHYRAGQPHAEVHA 61
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L A E ARGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +VSGRG+ L
Sbjct: 62 LRMAKEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGIAML 121
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V+ + L+ ++++ ++ LK+A S D +A S IT
Sbjct: 122 REAGIEVEVGLLEADAKVLNPAFIKRMQTGMPYVQLKLAASLDGQTALANGESQWITSAQ 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSK 235
++ V + RAQ+ A+L TV+AD+ L R + L + + + +
Sbjct: 182 ARQDVQVYRAQAGAVLSTSQTVIADNASLAVRWSELPADVQQQYP-HAELRQPTRVILDR 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + T V + L ++ + L VE G
Sbjct: 241 QHQLHQSLALYATTSPIIRVAEQDAELCVPLNEHQQLDLRDTLASLAEQYQINHLWVEAG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A S + +LVD +I+Y + ++G G + G D+
Sbjct: 301 PTLAKSLLEQQLVDELIIYLAPKIMGSDGRGLLGALGFTHMDQALGLVIQDCRMVGPDLR 360
Query: 352 LE 353
L
Sbjct: 361 LT 362
>gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 372
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 111/370 (30%), Positives = 183/370 (49%), Gaps = 15/370 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
M S+ DA+ M+ A+R + TS NP+V C++ G ++G+G G PHAE+
Sbjct: 1 MTQFSALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIH 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ +AGE +GATAYVTLEPC+H+GR+ PC++ +I+ G+ RVV + DP+ V+G GLQ
Sbjct: 61 AIAQAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQK 120
Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
LS G+ V + L+ ++ R +T+K+A S D + S ITG
Sbjct: 121 LSDAGVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFK 229
+++ V RA+S AIL G GTVLAD+P L R + +E + +
Sbjct: 181 LAREDVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGR 240
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + +L +P++I+ + A ++ + DL ++ L RG
Sbjct: 241 NQMRPDLHLFSLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQ 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+ VE GA +A + + ++L+D +ILY++ ++G+ G L +
Sbjct: 301 IWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQ 360
Query: 346 FGSDVCLEYI 355
G D+ L
Sbjct: 361 VGPDLKLTAR 370
>gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Trichodesmium erythraeum IMS101]
gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Trichodesmium erythraeum IMS101]
Length = 374
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 113/351 (32%), Positives = 178/351 (50%), Gaps = 8/351 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ L +R +G T+ NP V C+I+K+G +IG G G PHAEV AL EAGE+ARGA
Sbjct: 18 MAHCLELARRALGNTAPNPLVGCVIIKNGQIIGEGFHPGAGYPHAEVFALTEAGEKARGA 77
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYV LEPC+HYGR+PPC +I G+ RVV+ + DP+ V+G G+ L GI V +
Sbjct: 78 TAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQDAGIEVVVGV 137
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + A++ R + LK A++ D I S +T ++++VH LRA
Sbjct: 138 LEAECRELNEAFIHRMLYHCPFGILKYAMTLDGKIATTTGHSAWVTSQEARSEVHKLRAI 197
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SDA+++G TV D+P LT R Q ++P+R+++ L ++ + + ++
Sbjct: 198 SDAVIIGGNTVRRDNPFLTSR--STQANNPLRVVMSRSLDLPTEANLWDVSEAQTLVFTE 255
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ + R+K + ++ +++ L RG S+L E G +A + V
Sbjct: 256 IDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYDRGFLSVLWECGGTLAARAMADGAVQ 315
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
I + + +IG P+P+ L K + G D LE
Sbjct: 316 KIWAFIAPKIIGGEIAPTPVGNLGLTKMTEAFELENISMRTVGCDYLLEGY 366
>gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
ES-2]
gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
ES-2]
Length = 366
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 6/361 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
VS+ D+R+M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL +
Sbjct: 2 VSAEDSRWMAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLD 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A GATAYVTLEPCSHYGR+PPC +I G+ RVVV + DP+ +V+GRG+ L
Sbjct: 62 AGDAAHGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + L+A ++ + + K+ +S D ++ S ITG ++
Sbjct: 122 GISVDCGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARL 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA+S A+L GI T+LADD +L R E P R++LD H ++ LD++I++ +
Sbjct: 182 DVQHWRARSCAVLTGINTILADDAQLNVREID-VERQPKRVVLDSHLRMPLDARILQGGV 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
L + ++ L A + + DL ++ L RG +LVE GA + +
Sbjct: 241 LIYAALRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAVLNGA 300
Query: 302 FINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGK 357
+ + LVD ++LY S ++G GI + E L++ G D+ + +
Sbjct: 301 LLRAELVDEMLLYISPQLLGSSARGIAALGELTALDQRVDLKWQDVRQVGRDLRITVTVR 360
Query: 358 N 358
N
Sbjct: 361 N 361
>gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Coprococcus sp. ART55/1]
Length = 382
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 121/373 (32%), Positives = 175/373 (46%), Gaps = 21/373 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
FD +M A+ +R G + NP V +IVKDG +IG G G HAE A
Sbjct: 9 EFDPSYMRRAIELARRGTGAVNPNPLVGAVIVKDGRIIGEGYHVRYGELHAERAAFASLK 68
Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +A GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+G + L
Sbjct: 69 DQADAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRDA 128
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V ++E + V K+ ++T+K A++ D I S ITG S+
Sbjct: 129 GIEVYTHCLKAECDAINGIFFKYIVNKQPYVTMKYAMTMDGRIATHTGASKWITGEASRA 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR------LNGLQEHSPMRIILDPHFKLSLDSK 235
V LR + I+ GIGTVLADDP LTCR + +P+RI+ D ++ DS+
Sbjct: 189 YVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDRDTDNVRNPIRIVCDSKLRIPEDSQ 248
Query: 236 IIKTALLAPVIIV-------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
I++TA I+ L DL++L+TIL G+G+
Sbjct: 249 IVQTAGEIETIVATTAAGASDSAKCERLKDKGVSIIETEDVDGQVDLRQLMTILGGKGID 308
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRR 343
+L+EGG + +S ++ LVD ++ + + G G SP+ + F
Sbjct: 309 GILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADAHMFGLDEV 368
Query: 344 DYFGSDVCLEYIG 356
F DV L Y
Sbjct: 369 RRFDEDVMLRYKK 381
>gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein;
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus cereus E33L]
gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein;
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacillus cereus E33L]
Length = 367
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 186/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ACGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR IT+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L G+GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLDVLGGKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I ++L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 302 IENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDYRFIGYPE 361
>gi|222085509|ref|YP_002544039.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase protein [Agrobacterium radiobacter K84]
gi|221722957|gb|ACM26113.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase protein [Agrobacterium radiobacter K84]
Length = 371
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 190/367 (51%), Positives = 243/367 (66%), Gaps = 11/367 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D RFM+AA+R SRWH+GLTSTNPSV C+IVKDG VIGRGVTA GG PHAE QAL
Sbjct: 3 MTRRPDDERFMAAAIRLSRWHLGLTSTNPSVGCVIVKDGAVIGRGVTAVGGRPHAETQAL 62
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARGATAYVTLEPCSHYG++PPC++ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 63 ADAGEAARGATAYVTLEPCSHYGKTPPCSEALIAYGVARVVISVTDPDQRVSGRGIAMLR 122
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + E EG+ L YL RQ R ++TLK+AVS D MIG G G V ITG ++
Sbjct: 123 DAGIEVDIGILEEEGRHSLAGYLMRQTRNRPYVTLKLAVSTDGMIGKTGTGQVRITGDVA 182
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ QV ++RA+SDAILVGIGT +ADDPELTCRL GL++ +P+RI++D +L L SK++KT
Sbjct: 183 RAQVQVVRAESDAILVGIGTAIADDPELTCRLPGLEDRTPLRIVIDDQLQLPLGSKLVKT 242
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINII----------YCDCRDLKKLLTILVGRGVTS 289
A PVI V + P + + + +LL L RG++S
Sbjct: 243 ARQYPVITVAGHPPPFDENTDKALMARRAALDDAGVEVLQSNSNEPGELLEALGTRGISS 302
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LLVEGGA VA F+++ LVD I+L++ IGEGGI SP+ + + +F +R FG D
Sbjct: 303 LLVEGGARVAQRFLDADLVDRILLFQGPDAIGEGGIESPVTKTNIPPSFRHIRASQFGDD 362
Query: 350 VCLEYIG 356
C E+
Sbjct: 363 RCDEFER 369
>gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42]
gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42]
Length = 371
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 170/361 (47%), Gaps = 9/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M+ A+ +R G T +NP V ++VK+G ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGR 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GA YVTLEPCSHYG++PPCA+ II+ GI+RV + V DP+ V+G+G+ L GI
Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIE 120
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D S IT ++
Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG GTV AD+P LTCR P+R+ILD + + ++
Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCR-LPDAVKQPVRVILDTKLTIPETANVLTDGAAPT 239
Query: 245 VIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + D + + D + ++L+IL G+ S+ VEGGA+V SF
Sbjct: 240 WIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAENGIMSVYVEGGASVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
+ + Y + +IG PS + + + + G D+ L I K
Sbjct: 300 VKEDCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPK 359
Query: 358 N 358
+
Sbjct: 360 D 360
>gi|85706317|ref|ZP_01037411.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
gi|85669090|gb|EAQ23957.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217]
Length = 364
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 137/364 (37%), Positives = 190/364 (52%), Gaps = 11/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S DARFM+ AL R +G + NP+V C+IV+ ++GRG TA GG PHAE QAL +
Sbjct: 1 MSGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGRHIVGRGWTAPGGRPHAETQALAQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATAYV+LEPC+H+G++PPCA +I GI RVV DD D RV+GRG L
Sbjct: 61 AGDLARGATAYVSLEPCAHHGKTPPCADALIAAGITRVVAPFDDNDPRVAGRGFARLRAA 120
Query: 123 GIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + ++ L +L R R +TLK+A S D I A S ITG ++
Sbjct: 121 GIEVRTGVLADVAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+ DA++VG GT ADDP LT R G P+R+++ L L S + +TA
Sbjct: 181 VVHTLRARHDAVMVGAGTARADDPMLTVRDMG-ARRQPVRVVVSRRLDLPLLSNLARTAK 239
Query: 242 LAPVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ + + +A + + D +L L G+T + EGG
Sbjct: 240 DVPLWLCHGPNVDPALVAAWRGIGARLVSCEVRLGQVDPASVLKALGAEGLTRVFCEGGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
A+A S +++ LVD +I + + IG G+P L F V G DV
Sbjct: 300 ALAASLLSAGLVDELIGFTAGFAIGAEGLPGIGALGLARLEEAARFRLVETRSLGGDVMH 359
Query: 353 EYIG 356
+
Sbjct: 360 RWTR 363
>gi|126738756|ref|ZP_01754452.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
gi|126719937|gb|EBA16644.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6]
Length = 370
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 137/363 (37%), Positives = 191/363 (52%), Gaps = 11/363 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ DAR+M+ AL R G NP+V C+IVK+G ++GRG T GG PHAE QAL +A
Sbjct: 7 NQTDARYMALALSLGRRGQGKCWPNPAVGCVIVKEGRIVGRGWTQPGGRPHAEPQALAQA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPCSH+G +PPCAQ +I+ G+ VV ++D D RVSG+G + L G
Sbjct: 67 GEAARGATAYVTLEPCSHFGETPPCAQALIDAGVSHVVAAIEDSDPRVSGQGFEMLRMAG 126
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + +E HA + E+ R +TLK+A S D I S ITG ++ +
Sbjct: 127 ITVRTGVLAEEAGLDHAGFFYKTEQGRPWVTLKLASSFDGRIATGSGQSKWITGPEARRR 186
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH +RA DA++VG GT ADDP LT R + P+R+++ H L L ++ +TA
Sbjct: 187 VHAMRACHDAVMVGGGTARADDPSLTVR-DLGVAEQPVRVVISRHLDLPLMGQLARTAKE 245
Query: 243 APVIIVTENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
PV + V + + + D +L L G+T + EGG+A
Sbjct: 246 VPVWLCHGAGADVERIQAWEGLGARLLPCAAHGVQLDPNDILQQLGAAGLTRVFCEGGSA 305
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+A S + LVD +I + + + IG G+PS L F V G DV
Sbjct: 306 LAASLLAFDLVDELIGFTAGLGIGAEGLPSIGALGLTGLERAGRFDLVETTPVGGDVLHR 365
Query: 354 YIG 356
+
Sbjct: 366 WHR 368
>gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
Length = 368
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 109/365 (29%), Positives = 178/365 (48%), Gaps = 9/365 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A
Sbjct: 1 MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L
Sbjct: 61 MRMAGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAML 120
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + L+ ++ R + LK+A S D +A S IT
Sbjct: 121 REAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS AIL TVLAD+ L R + L S R + + + +
Sbjct: 181 ARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPS-SVQRALPQEQLRQPTRVVLDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
A L+P + + + + L + + + + + + + + L VE GA
Sbjct: 240 QAELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A I +LVD +I+Y + ++G G L+ + G D+ +
Sbjct: 300 TLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IAHIK 364
>gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|132565|sp|P17618|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis]
gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168]
gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. subtilis str. 168]
gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4]
Length = 361
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 119/356 (33%), Positives = 171/356 (48%), Gaps = 9/356 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI
Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D I + S IT ++
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG+GTV AD+P LTCR P+R+ILD + D+K+I +
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCR-LPNVTKQPVRVILDTVLSIPEDAKVICDQIAPT 239
Query: 245 VIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T D L+ NI + + + +L IL G+ S+ VEGG+AV SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ II Y + +IG PS + + G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLT 355
>gi|145298017|ref|YP_001140858.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850789|gb|ABO89110.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 369
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 118/367 (32%), Positives = 178/367 (48%), Gaps = 15/367 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D ++M+ AL +R T+ NP V ++VK G+V+G G G PHAE+ AL E
Sbjct: 2 FSQDDYQWMNRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEIYALHE 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+EARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V GRGL+ LS+
Sbjct: 62 AGDEARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPEVGGRGLRMLSEA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI D + S L+ +++ +T+K+ S D MA S ITG +++
Sbjct: 122 GIKTDFGLLSSEAEALNPGFFKRMRTAFPLVTVKLGASLDGRTAMASGESQWITGPLARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA DA+L TVLAD LT R + S + L +
Sbjct: 182 DVQRLRAGHDAVLSSAETVLADGASLTVRWDE-LPPSLKATYAKETLRQPLRVIVDSRNR 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK---------KLLTILVGRGVTSLLV 292
L P + + ++ PVL + + +L L +L R + S+LV
Sbjct: 241 LTPDLPLFQSTGPVLLARHKAAGDWPEWVQQLELPLLDGKLDLVSLFMLLAKRNINSVLV 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G + + ++ LVD ++LY++ ++G+ G L + G
Sbjct: 301 EAGPRLCGALLDKGLVDELVLYQAPKLMGDEGRGLFHLPALTRLFQAPKLCIKDVRLVGQ 360
Query: 349 DVCLEYI 355
D+ +
Sbjct: 361 DIRITAR 367
>gi|58699421|ref|ZP_00374173.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630417|ref|YP_002727208.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
gi|58534061|gb|EAL58308.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592398|gb|ACN95417.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi]
Length = 360
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 124/357 (34%), Positives = 184/357 (51%), Gaps = 8/357 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A +
Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V
Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ + + L+ E R I K+A + D I S IT ++N VH
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFIN 304
++T + +N LK + ++ G+T LLVEGG + +
Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
L+D +I+ RS ++G P + + ++ F + F D+ +
Sbjct: 303 CNLIDRLIICRSGKILGNDATP-FVGDLGIQFINNCYQFKKTKIIEFSEDIVEVWDR 358
>gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
Length = 359
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 127/350 (36%), Positives = 188/350 (53%), Gaps = 9/350 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+ARGA
Sbjct: 1 MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI V+ +
Sbjct: 61 TVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEVGI 120
Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + K +T+K A S D I A S IT ++ VH LRAQ
Sbjct: 121 LKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAILVG+ TV+AD+P+LT R G Q +P+R+ILD + LD+ ++ II
Sbjct: 181 HDAILVGVNTVMADNPKLTVR-IGQQRKNPLRVILDTNLHTPLDAHVVVDKEAETWIITG 239
Query: 250 E--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + I + D++++L +L + +TSL VEGG+ + SF+ S +
Sbjct: 240 SGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFLRSGM 299
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
V+ ++ Y + +IG P+P+ + + G D+ +
Sbjct: 300 VNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 349
>gi|240850690|ref|YP_002972090.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
gi|240267813|gb|ACS51401.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup]
Length = 375
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 153/376 (40%), Positives = 219/376 (58%), Gaps = 13/376 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55
M D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA G PHA
Sbjct: 1 MNKKVQDERFMAAAIRLAERHVGLTGENPSVGTLIVRNDNSAGAFIVGYGVTAIHGSPHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EVQAL AG A+GATAYVTLEPC+HYG++ PC +I+ GI RVVV + D D RV G G
Sbjct: 61 EVQALHMAGSLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRVVVALTDCDKRVDGHG 120
Query: 116 LQWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L GI V + +E + + +R +T K+A+S DN +G GSV I
Sbjct: 121 IALLRAAGIEVVEGILAEEAFESLWTHWCIRKIQRCAVTFKMAISADNGVGKREKGSVKI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+G +S H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + LD+
Sbjct: 181 SGTLSHAHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEVRSPIRIILDTDLSIPLDA 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVT 288
K+++TA+ P ++ + D + + + C + LL +L G+
Sbjct: 241 KVVQTAMKIPTWVICDVDLSKKSKKNALEQYGVSVYSVEMNNGCVEPFALLQMLYKYGIN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
S+L+EGG +F+N+ VD +I + + +++GEG + +P YL + F V FG+
Sbjct: 301 SVLLEGGVKTGETFLNAGCVDHLICFYAPVILGEGRVEAPHFGNYLSQ-FRKVESRMFGN 359
Query: 349 DVCLEYIGKNLCLQEL 364
D ++ K LC Q L
Sbjct: 360 DRFYKWRRKALCSQGL 375
>gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
Length = 366
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 9/363 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++S D +M+ AL+ + T+ NP+V C+IV+DG ++G G G PHAEV AL
Sbjct: 3 MSMTSHD-AWMAQALKLAARGRRTTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHAL 61
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG +ARGATAYVTLEPCSHYG++PPCA +I+ G+ VV + DP+ +V+G+GL+ L
Sbjct: 62 AEAGSKARGATAYVTLEPCSHYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLR 121
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + L+ R R + K+A S D +A S ITG +
Sbjct: 122 NAGIEVISGVLNAEAERLNRGFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEA 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V RA S A++ G+ TV+AD+P L RL+G + P+RIILD + + S I+
Sbjct: 182 RQDVQSGRADSCAVVTGVETVVADNPSLNVRLDG-ADRQPVRIILDTQARTPVPSTIVTL 240
Query: 240 ALLAPVII---VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I L A + D DL L+ + + +E GA
Sbjct: 241 PGRTVIIHGAQANPLSLERLQAAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F L+D + LY++ I++G P L+ F + G D+ +
Sbjct: 301 TLTGAFAEQGLLDELWLYQAPIMLGGATRPVADFRLDSLKQAHRFDVDDVRFVGKDIRWQ 360
Query: 354 YIG 356
+
Sbjct: 361 LLP 363
>gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
TIGR4]
gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
TIGR4]
Length = 366
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + V G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKVFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|163868466|ref|YP_001609675.1| riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
105476]
gi|161018122|emb|CAK01680.1| Riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP
105476]
Length = 375
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 154/376 (40%), Positives = 221/376 (58%), Gaps = 13/376 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55
M D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA+ G PHA
Sbjct: 1 MNKKVQDERFMAAAIRLAERHVGLTGENPSVGALIVQNDDCAGPFIVGYGVTAFHGRPHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EVQAL AG A+GATAYVTLEPC+HYG++ PC +I+ GI R+VV + D D RV GRG
Sbjct: 61 EVQALRMAGPLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRIVVALTDCDKRVDGRG 120
Query: 116 LQWLSQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
L L + G +V+ ++ E L + + +R +T K+AVS DN +G G + I
Sbjct: 121 LALLREAGIKVVEGILAEEAFESLWTHWCIKKMQRCAVTFKMAVSADNSVGKRDEGEIRI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+G +S H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + L++
Sbjct: 181 SGALSHTHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEMRSPIRIILDADLSIPLEA 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVT 288
K+++TA+ P ++ + D + + + + LL IL G+
Sbjct: 241 KVVQTAIKIPTWVICDVDLSKKSKKNTLEQYGVSVYSVEMNNGYVEPFALLQILYKHGIN 300
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
S+L+EGG F+N+ VD +I + S +V+G+ I +P YL + F V FG+
Sbjct: 301 SVLLEGGVKTGEKFLNAGCVDHLICFYSPVVLGKKRIEAPHFGNYLSQ-FHEVETKMFGN 359
Query: 349 DVCLEYIGKNLCLQEL 364
D ++ K LC QEL
Sbjct: 360 DRFYKWRRKTLCSQEL 375
>gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
Kyoto]
gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str.
Kyoto]
Length = 365
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 113/361 (31%), Positives = 185/361 (51%), Gaps = 15/361 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G + NP V ++VK+ +IG G Y G HAEV AL EAGE+A+
Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGSHAEVYALREAGEKAK 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q G +V
Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ME E K ++ +K+ + LK A + D I S ITG ++ +V +R
Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEDARYKVQQIR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
I+VGIGT++ D+P LT R+ G + + I+D + ++ L+SKI++T + I
Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIEGGRSPRAI--IVDSNLRIPLESKILETLNKRAIYI 243
Query: 248 VTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
T + +N L +L+ L GV S+L+EGG+ +
Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD ++ + + ++G + + +E N ++ + G D+ +E
Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIEGY 363
Query: 356 G 356
Sbjct: 364 V 364
>gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
DSM 20745]
gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus
DSM 20745]
Length = 387
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 185/371 (49%), Gaps = 16/371 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
V + D +M AL + G + NP+V ++V+DG ++G G T HAE+ AL +
Sbjct: 9 VPATDLHWMRRALDLAASARGRVAPNPAVGAVLVRDGRLVGEGATEPPPGAHAEIVALRQ 68
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGAT YVTLEPC+HYGR+PPC +I GI R VV + DP V+GRGL+ L++
Sbjct: 69 AGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRLLAEA 128
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + + ++A R +T K AVS D I + ITG ++
Sbjct: 129 GVRVELGLAAGAAAAINAGFLKRVHCGLPEVTAKFAVSLDGKIATHTGHARWITGAEARR 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKI 236
+ H LR DAI+VGIGT+LADDP LT RL H P+R+++D + + +
Sbjct: 189 EGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPEDCGAGGPHHPLRVVVDSQARTPPGAAM 248
Query: 237 IKTALLAPVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ + ++ T + P +A + DL LL L RGV S+L
Sbjct: 249 LQPHMPGRTLLATTSSAPPERIAALRAVGADVVTLPDHGGRVDLHALLRCLAARGVNSVL 308
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
VEGG + + ++ L+D + + + +++G P PL + V
Sbjct: 309 VEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDAPGPLGGEGVATMDAACRLREVEVCQV 368
Query: 347 GSDVCLEYIGK 357
GSD+ ++ +
Sbjct: 369 GSDLMVQGRVQ 379
>gi|254459689|ref|ZP_05073105.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
HTCC2083]
gi|206676278|gb|EDZ40765.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
HTCC2083]
Length = 364
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 13/366 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +S D +M AL +R +G T NP+V C+IV G ++GRG T GG PHAEV AL
Sbjct: 1 MILS--DQAYMKMALSLARRGLGRTWPNPAVGCVIVNAGRIVGRGWTQVGGRPHAEVVAL 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+ A GATAYVTLEPC+H+G++PPC++ +IE GI RVV ++D D RVSGRG L
Sbjct: 59 VQAGKRANGATAYVTLEPCAHHGQTPPCSEALIEAGIARVVAAMEDSDPRVSGRGFAQLR 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G++V+ + ++ +A + R +TLK+A+S D I S ITG +
Sbjct: 119 GAGVVVETGICAKDAAESNAGFFLKTEVGRPFVTLKLALSLDGRIATLTGDSQWITGSEA 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RA DA+L+G GT DDP LT R G H P+R++ K+ L+S + KT
Sbjct: 179 RRAVHAMRATHDAVLIGAGTARGDDPSLTVRGLG-IGHQPVRVVAAQSLKIDLESSLAKT 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A PV + +D A + +++ L +G+T + EG
Sbjct: 238 ARDVPVWLCHGSDVKDEDRAAWIDLGAELIACETDASGLEPHQMMQALGHKGLTRVFCEG 297
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A S + + LVD ++++ + + IG G + F G D+
Sbjct: 298 GGHLAASLLRADLVDRLVIHSAGVAIGGDGLAGLASMGHDVLADAARFRLASHRQLGVDI 357
Query: 351 CLEYIG 356
+
Sbjct: 358 EHIWQR 363
>gi|304312168|ref|YP_003811766.1| Riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [gamma proteobacterium HdN1]
gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [gamma proteobacterium HdN1]
Length = 389
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 123/382 (32%), Positives = 187/382 (48%), Gaps = 23/382 (6%)
Query: 1 MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
MP ++FD + MS AL+ + + T NP V C+IV++G ++G G G HAEV
Sbjct: 1 MPSYDFNAFDHQMMSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
ALE+AGE A+GATAYVTLEPC+HYGR+PPCA +I+ GI RVV + DP+ RVSG G
Sbjct: 61 LALEQAGERAKGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYG 120
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI D + + L+ +++ + +K +SQD MA S IT
Sbjct: 121 LLRAAGIKTDNGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITS 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------------EHSPMRII 223
++ V LRA+S+A++ G+ TVL+DDP LT R P+R+I
Sbjct: 181 SPARADVQRLRARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVI 240
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL--TI 281
LD + +++++ + N + AL + +
Sbjct: 241 LDSQLRTPTSARLLREPGQNVFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVLQW 300
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKN 337
L + V +L+E GA+VA SFI + LVD ++Y++ ++G P+ L ++
Sbjct: 301 LAAQEVNEVLIEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEGLSGMKDKRT 360
Query: 338 FMCVRRDYFGSDVCLEYIGKNL 359
V G D Y ++L
Sbjct: 361 LDLVDSRQIGLDHRFTYRLRSL 382
>gi|262168270|ref|ZP_06035967.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae RC27]
gi|262023162|gb|EEY41866.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae RC27]
Length = 365
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 176/362 (48%), Gaps = 8/362 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +
Sbjct: 2 FTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L
Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E++ ++ +L R + LK+A S D +A S IT ++
Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQ+ AIL TVLAD+ L R L + + + L + +
Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQ-YAEADLRQPLRVILDRQHQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P + + + PVL +A I+ + L + V L VE G+ +A
Sbjct: 241 LHPELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQLWVEAGSQLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S I +LVD IILY + ++G G L E G+D+ +
Sbjct: 301 QSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIAT 360
Query: 356 GK 357
K
Sbjct: 361 PK 362
>gi|51246637|ref|YP_066521.1| riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila
LSv54]
gi|50877674|emb|CAG37514.1| probable riboflavin biosynthesis protein (RibD) [Desulfotalea
psychrophila LSv54]
Length = 401
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 126/359 (35%), Positives = 184/359 (51%), Gaps = 10/359 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M AL +R G TS NP V +IV DG V+GRG G PHAEV AL +AG
Sbjct: 37 ELDQKYMLLALAEARRGQGRTSPNPCVGAIIVGDGSVVGRGYHKKAGTPHAEVHALRDAG 96
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A GATAYVTLEPCSH GR+PPC + + G+ RVVV + DP+ V+GRG+Q+L GI
Sbjct: 97 EKAAGATAYVTLEPCSHTGRTPPCCVALAKAGVLRVVVGMTDPNPLVNGRGVQYLRDHGI 156
Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E++ + ++ + + +K +S D + ITG S V
Sbjct: 157 EVSTGICEADCREINRPFIKKITTGTPWMIMKAGISLDGRMNYKEGEPGWITGPESGALV 216
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR DAI+VG GTV+ D+P LT RL G P+ +ILD K D+ + A
Sbjct: 217 HQLRDSVDAIMVGSGTVMIDNPSLTTRLPGGGGRDPVAVILDSQLKTDPDAHVYSAASGR 276
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-----KLLTILVGRGVTSLLVEGGAAV 298
V++ ++D + I+ + +++ +L R + S+LVEGGA +
Sbjct: 277 SVLVFCQHDVDEGRKEVFAERGVIVLPVSSLPEGLDLGEIVAVLGERDICSVLVEGGAQL 336
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ RL D + L+++ + G+GG+ PL VRR G+ + LE
Sbjct: 337 HGQLLQKRLYDYLYLFQAPLFAGDGGVSLVTGCPLAGREDAIALRGVRRSVLGAHLLLE 395
>gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bacillus subtilis BSn5]
gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis BSn5]
Length = 361
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/356 (33%), Positives = 171/356 (48%), Gaps = 9/356 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI
Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D I + S IT ++
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG+GTV AD+P LTCR P+R+ILD + D+K+I +
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCR-LPNVTKQPVRVILDTVLSIPEDAKVICDQIAPT 239
Query: 245 VIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T D L+ NI + + + +L IL G+ S+ VEGG+AV SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ II Y + +IG PS + + G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLT 355
>gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
Length = 376
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 183/365 (50%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GLQ L++ GI
Sbjct: 68 RAIGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQRLAEAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + +L R + K+A+S D MA S ITG +++ V
Sbjct: 128 VASGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA+S +L +VLAD+ +T R L +P+R+++D +L LD+
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSRLRLPLDA 247
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DDP A A + DL LL L RGV +L+E
Sbjct: 248 AFFQAGPA--LVVAAVADDPRYAAAGHELLSLPGDNGQVDLPALLQALAARGVNEILLEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA + +F LVD L+ + +G P PL + G D
Sbjct: 306 GAGLVGAFAQQGLVDEYQLFVAGTFLGSQARPLLDWPLGKMSEAPRLKITEMRAVGDDWR 365
Query: 352 LEYIG 356
+ I
Sbjct: 366 VTAIP 370
>gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 369
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 112/365 (30%), Positives = 190/365 (52%), Gaps = 13/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAG
Sbjct: 4 NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI
Sbjct: 64 ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ ++E E K + K ++ LK ++ D I S IT I++ +V
Sbjct: 124 EVELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + ++ K +
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNF 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296
+I+ + ++ + L K I ++ +L L G+ S+L+EGG+
Sbjct: 244 NDGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + +VD+ ++ + +IG+ + + + + +G ++
Sbjct: 304 GLISTAFKENIVDAGEIFIAPKIIGDSSAIPFINGFNFDSMEDVFKLPNPKFNIYGDNIS 363
Query: 352 LEYIG 356
+E+
Sbjct: 364 IEFEN 368
>gi|261253738|ref|ZP_05946311.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio orientalis CIP 102891]
gi|260937129|gb|EEX93118.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio orientalis CIP 102891]
Length = 368
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 107/366 (29%), Positives = 171/366 (46%), Gaps = 9/366 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP + D MS A+ ++ + T+ NP+V C+IV+ ++G G G PHAEV A
Sbjct: 1 MPLFTPQDFTMMSRAIELAKGGIYTTAPNPNVGCVIVQGDEIVGEGFHYRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+ A GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG+Q L
Sbjct: 61 LRMAGDRAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPKVAGRGIQML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ + + L+ +Q++ + LK+A S D +A S IT
Sbjct: 121 RDAGITVEVGLLEQQAESLNPAFIKQMKTGMPFVQLKMAASIDGQTALANGQSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RA+S AIL TV+ D+ L R + L + + + +
Sbjct: 181 ARQDVQKYRAKSGAILSTSKTVIEDNASLNVRWDDLPLSLQE-AYSQQELRQPVRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGA 296
L + + + + +A + I+ + + + L VE GA
Sbjct: 240 NHQLTSDLKLMSTEGERIIVAEGQDLEPILNDEQLIDLAATFSALAKQHHINHLWVEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I + LVD +ILY + ++G LE + G D+ +
Sbjct: 300 TLASSLIKANLVDELILYLAPKIMGSDGRGLLGALGLESMAETIDLNVKDVRQVGQDIRI 359
Query: 353 EYIGKN 358
KN
Sbjct: 360 TATLKN 365
>gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
Length = 363
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 106/358 (29%), Positives = 170/358 (47%), Gaps = 14/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL +AG+EA+G
Sbjct: 1 MMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQAGKEAQG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L++ GI
Sbjct: 61 ATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETASG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +LTR + + LK+A S D + S IT ++ V RA
Sbjct: 121 LLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRYRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL--DSKIIKT 239
QS AIL TV+ D+ L R + + +R + S +
Sbjct: 181 QSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLKLF 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ ++ + + + + + + I V + VE GA +A
Sbjct: 241 QASGEVVTISSQNTHPIVTSENHIQCCVDDEQLNLKEVVNKISRDFNVNHIWVEAGATLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
S I LVD +I+Y + ++G G LE + G D+ +
Sbjct: 301 ASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDIRMVGKDIRIT 358
>gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus ATCC 51756]
gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus ATCC 51756]
Length = 369
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 182/365 (49%), Gaps = 12/365 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R + T NP V ++V+DG ++GRG G HAEV AL +AGE ARGA
Sbjct: 1 MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQAGERARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H+GR+PPC I+ G+ RVV+ + DP+ RV G G+ L Q+G+ V+
Sbjct: 61 TLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVELGC 120
Query: 131 ESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E L+ R++ R I LK A S D + +A S +TG ++ V RA
Sbjct: 121 LAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRERAA 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AI+VG+GTVLAD+P L R++ P +IILD H + D+ + T +
Sbjct: 181 ASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTPGEIWIFHGQ 240
Query: 250 ENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ D A + DL L T L R +LVE G +A S +
Sbjct: 241 DADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATSLLR 300
Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN-- 358
VD +LY + ++GEG P+ P + ++ R + DV L+ +
Sbjct: 301 GGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKLQLLSAEGQ 360
Query: 359 LCLQE 363
CLQE
Sbjct: 361 SCLQE 365
>gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase (C-terminal) [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase (C-terminal) [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 392
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 120/371 (32%), Positives = 179/371 (48%), Gaps = 19/371 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +MS ALR + T+ NP+V C++V+ G V+G G G PHAE+ AL++AG
Sbjct: 13 QDEFYMSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKAGR 72
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+G+ AY+TLEPC HYG++PPC + +I+ G+RRVVV ++DP+ ++GRGL L Q GI
Sbjct: 73 LAKGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIE 132
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + S L+ R +I LK+A S D MA S IT S+ V
Sbjct: 133 VTSGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQ 192
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
RAQS AIL TV AD+P LT R P+RIILD H K++
Sbjct: 193 FFRAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQ 252
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL---VGRGVTSL 290
++++ +I + + +I + D ++ L +++ R + +
Sbjct: 253 HQVVQQPGTCWLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNLI 312
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
VE GA +A + + LVD +ILY + ++G L E F+
Sbjct: 313 WVEAGAELAGGLLEAGLVDELILYMAPKLLGNTARGLCQLPGLNELAKAPEFVLQEVKQM 372
Query: 347 GSDVCLEYIGK 357
G D+ L
Sbjct: 373 GPDLRLRLKPD 383
>gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
11563]
gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC
11563]
Length = 364
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 13/363 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
+M AL + G T +NP V +IVK+ +IGRG G HAE +AL++A G
Sbjct: 2 KDYMQEALDLAELGQGWTRSNPMVGAVIVKNSQIIGRGYHQQYGGLHAEREALKDANEQG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +GAT YVTLEPC H+G++PPC Q IIE GI +VVV DP+ V+G+G+Q L I
Sbjct: 62 HDVKGATMYVTLEPCCHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHI 121
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E + + +R ++T+K A++ D S IT I++ V
Sbjct: 122 EVETGLLAEESEDLNRKFNYFMTHQRPYVTMKYAMTLDGRTAAYTGDSQWITDKIAREHV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R ++ +I+VGIGTVLADDP LT R++ + +P+RI+ D KL L+S+++ TA
Sbjct: 182 HYQRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIRIVCDTSLKLPLNSQLVATAKET 241
Query: 244 PVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P II T N +P A++ + DL L+T L +G+ S+ VEGG+ +
Sbjct: 242 PTIIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLDLITQLGQQGIQSIYVEGGSKLN 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354
S + + L+ I Y VIG SP+ + + G D+ +E
Sbjct: 302 ASLLEAGLIQEIHTYIGPKVIGGFDQYSPISGFGFPQMDQALTSNVQAITSLGKDLLIES 361
Query: 355 IGK 357
Sbjct: 362 RVD 364
>gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto
BEST195]
Length = 361
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 119/356 (33%), Positives = 171/356 (48%), Gaps = 9/356 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI
Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D I + S IT ++
Sbjct: 121 VREGILADQAESLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG+GTV AD+P LTCR P+R+ILD + D+K+I +
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCR-LPNVTKQPVRVILDTVLSIPEDAKVICDQIAPT 239
Query: 245 VIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T D L+ NI + + + +L IL G+ S+ VEGG+AV SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ II Y + +IG PS + + G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLT 355
>gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
13124]
gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC
13124]
Length = 371
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 177/362 (48%), Gaps = 13/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ +
Sbjct: 6 NLDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSI 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + GI
Sbjct: 66 KSTEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGI 125
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + I + E R I LK A++ D I S IT S+ V
Sbjct: 126 EVKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTAL 241
H LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 186 HSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQN 245
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGA 296
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 246 ESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGG 305
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+ +F+ ++ V+ I + + V G +P+E + F V F D+
Sbjct: 306 NLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDIL 365
Query: 352 LE 353
+E
Sbjct: 366 IE 367
>gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
Length = 366
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 115/366 (31%), Positives = 177/366 (48%), Gaps = 9/366 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
SS D FMS ALR + + T+ NP V C++ D +IG G G PHAE+ AL
Sbjct: 2 FSSVDYAFMSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINALAS 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E A GATAY+TLEPCSHYGR+PPC +I+ GI +V++ ++DP+ VSGRG L Q
Sbjct: 62 TSEAACGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L+ ++ R + K+ I LK A S D + S ITG ++
Sbjct: 122 GITVQTGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQ 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H RA+S AI+ GIGTV +D+P+L+ R + P +II+D H + L++K++++
Sbjct: 182 DGHRWRARSCAIMTGIGTVKSDNPQLSVR-HAETARQPKKIIVDSHLNIPLNAKLLQSDG 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL---VGRGVTSLLVEGGAAV 298
+ + R I+ + + L ++ + +LVE G +
Sbjct: 241 EVLIFTAHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGREL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ I + LVD +I Y + ++G+ L +K G D+ +
Sbjct: 301 NGALIEAGLVDEMIFYLAPHLLGDDARGMIKLPELTCLEQKKELKIQDVRMIGQDIRIIA 360
Query: 355 IGKNLC 360
C
Sbjct: 361 KFPQSC 366
>gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus anthracis CI]
gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar
anthracis str. CI]
Length = 367
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR IT+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +G+ SLL+EGG V SF
Sbjct: 242 IFTTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGICSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I + L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 302 IENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 361
>gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Streptococcus pneumoniae OXC141]
Length = 366
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ +
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27]
Length = 369
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 112/363 (30%), Positives = 192/363 (52%), Gaps = 13/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAG
Sbjct: 4 NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI
Sbjct: 64 ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 124 EVELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L RL+ +++ +P R+++DP+ + +++K +
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNF 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
+II + ++ + + K + K+ IL G + S+L+EGG+
Sbjct: 244 NDGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + ++D+ ++ + +IG+ + + + + +G ++
Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNFDNMEEVFKLPNPKFNIYGDNIS 363
Query: 352 LEY 354
+E+
Sbjct: 364 IEF 366
>gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP6-BS73]
gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP6-BS73]
Length = 366
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134]
Length = 367
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 125/359 (34%), Positives = 184/359 (51%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T YVTLEPCSH+GR+ PCA I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGGTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDREAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
I ++L+D IILY + +IG PS +E + K F + G D
Sbjct: 302 IENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP 360
>gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC3059-06]
gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Hungary19A-6]
gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Hungary19A-6]
gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC3059-06]
Length = 366
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ +
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
8239]
gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC
8239]
Length = 365
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 176/361 (48%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ +F+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
Length = 387
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 125/381 (32%), Positives = 184/381 (48%), Gaps = 25/381 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D +FMS AL+ +R + T NP V C++V+ G V+G G A G HAE AL
Sbjct: 1 MSFSAADHQFMSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG+ A+GATAYVTLEPCSH GR+ PCA ++E G+ RVV ++DP+ +V+G+GLQ L+
Sbjct: 61 AAAGDRAQGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLA 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +E++ + ++ R +R +I +KIA S D MA S ITG +
Sbjct: 121 DAGIAVASGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL------------------QEHSPMR 221
+ V LRA+S A++ G+GTVLAD P T R P+R
Sbjct: 181 REDVQRLRARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLR 240
Query: 222 IILDPHFKLSLDSKIIKTALLAPVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
+ILD + D ++ ++ L A + DL++LL
Sbjct: 241 VILDRTLRTPPDVPVVSAPGHCLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDLQQLL 300
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLE 335
L R +LVE GA +A +F+ L D I++Y + ++G P L +
Sbjct: 301 IELNRRECNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARPLLGLPQLASMSEK 360
Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
G D+ L +
Sbjct: 361 VALRWQDVRQIGDDLRLTLVP 381
>gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio coralliilyticus ATCC BAA-450]
Length = 368
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 105/366 (28%), Positives = 175/366 (47%), Gaps = 9/366 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + D + MS A+ ++ + T+ NP+V C+I D ++G G G PHAEV A
Sbjct: 1 MSEFTPQDYQMMSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG++ L
Sbjct: 61 LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L++ ++++ + LK+A S D ++ S IT
Sbjct: 121 CDAGIEVQVGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQ+ AIL TV+ D+ L R L E ++ + + + + +
Sbjct: 181 ARQDVQNYRAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLP-ESEVRQPVRVVLDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGA 296
L+ + D + ++ + ++ + K ++ + L VE GA
Sbjct: 240 QQQLSSELKFYSTDGERIVVSAQGDVAPLLNDSEQIDLKSTFANLVSHHNINHLWVEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S I LVD +ILY + ++G G LE G D+ L
Sbjct: 300 TLASSLIKEGLVDELILYLAPKIMGSDGRGLFGALGLESMAEVIELDIQDIRQVGQDIRL 359
Query: 353 EYIGKN 358
KN
Sbjct: 360 VARLKN 365
>gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
gi|52786214|ref|YP_092043.1| hypothetical protein BLi02475 [Bacillus licheniformis ATCC 14580]
gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580]
gi|52348716|gb|AAU41350.1| RibD [Bacillus licheniformis ATCC 14580]
Length = 362
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 129/354 (36%), Positives = 175/354 (49%), Gaps = 9/354 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG
Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI V
Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E L+ + ++TLK A S D A S IT ++ H
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R ILVG GT+ ADDP LTCR + P+R++LD + L SK+I+
Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCR-LPGAVNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I T DP K+ + + D ++ +L L RG+ S+ VEGGA V SF+
Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
L II Y + +IG PS L + G D+ L
Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKIGQDIKL 355
>gi|58616834|ref|YP_196033.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
Gardel]
gi|58416446|emb|CAI27559.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str.
Gardel]
Length = 370
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 135/354 (38%), Positives = 200/354 (56%), Gaps = 7/354 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+
Sbjct: 6 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ ++DPD+RVSG G++ L
Sbjct: 66 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIAINDPDMRVSGNGIKLLRDA 125
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V +M++E + + +++ R IT+KIA + D I + S IT +++
Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA
Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ P I+T + A I+ + K+L G+T L VEGG+ +
Sbjct: 246 VIPTYILTNSIKETKLGAANYLCIDSEDNFLSESMKVLVK--KVGITRLFVEGGSILITE 303
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ + LVD II RS + G IP+ + E NF V YF DV
Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQCSYNFKRVDTLYFDGDVV 357
>gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
Length = 369
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 190/367 (51%), Gaps = 13/367 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ +R G TS NP V C+IVK+ ++ G G PHAEV+AL+ AG+
Sbjct: 8 DDEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRAGD 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YV LEPC+H+G++PPCA + + RVV+ + DP+ V+G+G++ L +I
Sbjct: 68 GAKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLI 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ + E E K ++ R ++R TLK A + D I + S IT S+N+ H
Sbjct: 128 TETGVLEDECKWVNRGFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLRA+ D I+VG+GTVL DDP LT R + P+RI++D + D+ I++
Sbjct: 188 LLRAEHDGIMVGVGTVLRDDPSLTVRHTVGRS--PIRIVVDTMLRTPADAAILRGDGAII 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAAVAHS 301
+ ++ + + + L + IL RG+ S+LVEGGA +A +
Sbjct: 246 LAGISAQKMGKHDQLSKAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATLASA 305
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
FI +L+D + L+ + ++G GI + F + G D+ +E + +
Sbjct: 306 FIQEKLIDGLSLFIAPTIMG-QGISLFKEIVVPSLDKLIRFRVLNMSRTGRDIWIEGVPE 364
Query: 358 NLCLQEL 364
C +L
Sbjct: 365 --CSPDL 369
>gi|84502762|ref|ZP_01000881.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
HTCC2597]
gi|84389157|gb|EAQ01955.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis
HTCC2597]
Length = 367
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 138/362 (38%), Positives = 187/362 (51%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D RF+S AL R +G T NPSV C+IV+DG ++GRG TA GG PHAE QAL +AG
Sbjct: 4 AADRRFLSLALALGRRGLGRTWPNPSVGCVIVRDGRIVGRGWTAPGGRPHAEPQALAQAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYV+LEPC+H+G++PPC + +I GI RVV + D D RV+G+G + L GI
Sbjct: 64 EAARGATAYVSLEPCAHHGKTPPCTEALIAAGIARVVAPLADTDPRVAGQGFERLRWAGI 123
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E HA R R +TLK+A S D I A S ITG ++ V
Sbjct: 124 EVSTGLLGEEAARDHAGFFLRNELGRPLVTLKLASSFDGRIATATGDSRWITGAEARRAV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R + DA++VG GT ADDP LT R G P+RI++ L L S++ +TA
Sbjct: 184 HAMRMRHDAVMVGAGTARADDPSLTVRDMG-ATRQPVRIVVSRRLDLPLMSRLARTAKEV 242
Query: 244 PVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
PV + D + D + +L L G+T + EGG A+
Sbjct: 243 PVWLCHGPDADPALHRTWADLGARLFACDVAGGHLDPRSVLGALGEAGLTRVFCEGGGAL 302
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S +N+ LVD++I + + IG G P+ L F G DV +
Sbjct: 303 AASLLNADLVDTLIGMTAGVAIGAEGQPALGALGLARLAEAPRFDLAEARPLGGDVMHVW 362
Query: 355 IG 356
Sbjct: 363 ER 364
>gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab]
Length = 371
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 180/359 (50%), Gaps = 7/359 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D ++M L +R S NP VAC+IV+ V+G GV G PHAEV AL
Sbjct: 1 MNL-DADRQWMERCLSLARSTPQRPSPNPRVACVIVRGDQVVGEGVHLGAGQPHAEVLAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++AG A+GAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L
Sbjct: 60 QQAGSLAKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQ 119
Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V + + L+ + V+KR LK A++ D A S I+ ++
Sbjct: 120 EAGVEVTVGVLEQECQELNEGFAFAIVQKRCFGLLKYAMTLDGKSAAATGHSRWISNPLA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH RA DA++VG GTV D+P LTCRL P+R++L L + + +
Sbjct: 180 REWVHRQRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGSQPLRVVLSRSLNLPPLAHLWRA 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++I + L + K+ + +++ D + +L RG S L E G +A
Sbjct: 240 EEAPTLVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQVLFERGCLSALWECGGTLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVR--RDYFGSDVCLE 353
+ + + + + + ++G P+P+ + +++ + G + +
Sbjct: 300 WAALKDGAIQKVAAFIAPKILGGADAPTPVAGEGIPDVNQSWQLLEPQLQTVGDNWLIT 358
>gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7]
Length = 369
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 173/370 (46%), Gaps = 16/370 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
FM AL + +G S NP V +IV+DG +I G G HAE A E +
Sbjct: 3 HEDFMREALALAEKGMGHVSPNPMVGAVIVRDGNIIASGYHKRYGDLHAERSAFAECDAK 62
Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
RGA YVTLEPC H+G+ PPC +IE GI+RV V DP+ V+G+G L + G
Sbjct: 63 DIDCRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHG 122
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + L+ + + +TLK A++ D I S ITG ++
Sbjct: 123 IEVTEGVLKDECDRLNEIFFKFITTGLPFVTLKYAMTLDGKIACYTGKSQWITGETARKH 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AI+VG+GTVLADDP LTCR+ P+RII D H + LDS I++T+
Sbjct: 183 VHRERLHHAAIMVGVGTVLADDPMLTCRIKN--VRDPLRIICDTHLRTPLDSNIVRTSEK 240
Query: 243 APVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P +IV + D + K+ DL L+ L + S+L+EGG +
Sbjct: 241 VPTLIVCGDADSGRIGEYEKRGCKVLSLPDKNGSTDLSALMAYLGKEKIDSVLIEGGGML 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
S + S +VD ++ Y + + G +P+ + R D+ +E
Sbjct: 301 GWSALESGIVDKVMAYVAPKIFGGSNAKTPVGGQGVAVPDDAFMLEDRRITELDGDILIE 360
Query: 354 YIGKNLCLQE 363
K C Q+
Sbjct: 361 GRVKK-CSQD 369
>gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
T7901]
gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
T7901]
Length = 363
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 179/363 (49%), Gaps = 9/363 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D FM ALR + + T+ NP V C++VKDG+VIG G G PHAEV AL
Sbjct: 1 MDFSTADTVFMQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL 60
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ + GATAYVTLEPCSH G++ PCA +++ GI R+V ++DP+ V+GRGL
Sbjct: 61 KSVIDRQQLAGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDK 120
Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + G++VD + E + L+ ++ R + K+A+S D M S ITG
Sbjct: 121 LQRAGVVVDGPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ V LRA+S AI+ G+ +VL DDP LT RL E P+R+I+D ++ +++
Sbjct: 181 SARADVQKLRARSCAIITGVESVLLDDPLLTVRLPE-CERQPIRVIVDSQLRVDPSAEVF 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
++ T + L + + LL + +L+E GA
Sbjct: 240 --RQPGTTLVATCDAAKALNSELDTWPLPEKMGHVDLRELLLGLAEHYQCNEVLLETGAK 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A +F+ + LVD +I+Y + ++G P P+ G D +
Sbjct: 298 LAGAFVAAGLVDELIVYVAAKLMGSDARPLLELPILTMGASLELTIKDVRAVGPDWRITA 357
Query: 355 IGK 357
I
Sbjct: 358 IPD 360
>gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP18-BS74]
gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1873-00]
gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
P1031]
gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
670-6B]
gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP18-BS74]
gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
CDC1873-00]
gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
P1031]
gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
670-6B]
gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA17545]
gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA47368]
Length = 366
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ +
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|146341344|ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bradyrhizobium sp. ORS278]
gi|146194150|emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Bradyrhizobium sp. ORS278]
Length = 383
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 147/364 (40%), Positives = 200/364 (54%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL AG
Sbjct: 19 DADRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH+G+SPPCA +I GI RVV V+DP+ V+ +G L GI
Sbjct: 79 EAAKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVSAVEDPNPEVAAQGHAKLRAAGI 138
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + S HA R++ R + LK+AVS D+ I AG V ITG ++ +V
Sbjct: 139 QVEVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSADDKIAAAGSKPVAITGEAARTRV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L S++I++A
Sbjct: 199 HLLRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVRVVLDPMLRLPSASRLIQSARTT 258
Query: 244 PVIIVTENDDPVLAL-------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ +V A + + +L L +G+T L++EGG+
Sbjct: 259 PLWLVASEVAEPATATRLGAAGAQVIRVPPQADPSALEPPAVLKALAEKGITRLMIEGGS 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA SF+ S LVD I L R IG GI + PL + + D+
Sbjct: 319 RVASSFMQSGLVDEIWLLRGPREIGADGIAALDALPLTAITQSPAYRVRASETLDPDILT 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
Length = 378
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 125/374 (33%), Positives = 187/374 (50%), Gaps = 20/374 (5%)
Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
M + S DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAE
Sbjct: 1 MNMPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL
Sbjct: 61 VHALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGL 120
Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+ L++ GI V + E+E + +L R + K+A+S D MA S IT
Sbjct: 121 RRLAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILD 225
G +++ V LRA+S +L +VLAD+ +T R L +P+R+++D
Sbjct: 181 GPAARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVD 240
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+L L + + +++ DDP A A + DL LL L R
Sbjct: 241 GRLRLPLAAPFFQAGPA--LVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAAR 298
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVR 342
GV +L+E GA + +F LVD L+ + +G P P+++
Sbjct: 299 GVNEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITE 358
Query: 343 RDYFGSDVCLEYIG 356
G D + I
Sbjct: 359 MRAVGDDWRVTAIP 372
>gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus nematophila ATCC 19061]
gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus nematophila ATCC 19061]
Length = 369
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 119/369 (32%), Positives = 170/369 (46%), Gaps = 16/369 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +MS AL + TS NP+V C+IVKD ++G G G PHAEV AL
Sbjct: 1 MMTLDEIYMSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A+GATAYVTLEPCSH+G++PPCA +I G+ RVVV + DP+ +V+GRGL L Q
Sbjct: 61 AGEKAKGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + L+ R ++ LK+ S D ++ S IT ++
Sbjct: 121 GIAVEHGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQ AIL TVLADDP +T R N L + + + +
Sbjct: 181 DVQTLRAQCSAILSSSATVLADDPSMTVRWNELDA-ETQSVYPEERLRQPIRIITDSQNR 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLL 291
+ P V + K + + DL L+ L R + S+
Sbjct: 240 VTPQHQVIQQTGQCWLAYTNKNEQHWPDNVKQILLPAHGGGVDLVLLMMQLGKRQINSVW 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347
E G A+A + ++ LVD +ILY + V+G L + F G
Sbjct: 300 AECGPALAGALLSLGLVDELILYIAPKVLGNSARGLFDIPELHKLSDAPEFTLFDVKQIG 359
Query: 348 SDVCLEYIG 356
D+ L
Sbjct: 360 PDIRLRLRP 368
>gi|119774153|ref|YP_926893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase.,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella amazonensis SB2B]
gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella amazonensis SB2B]
Length = 378
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 186/371 (50%), Gaps = 17/371 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
S+ D M+ A+ ++ T NP+V C+IV D G ++G G G PHAEV AL+
Sbjct: 7 FSALDRAMMARAIMLAKRGQYTTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALK 66
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
A ++ARGATAYVTLEPCSHYGR+PPCA+ +I+ G++RVVV + DP+ +V+GRG++ L
Sbjct: 67 AAADKARGATAYVTLEPCSHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQD 126
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V ME+E + +L+R KR +T+K+ S D ++ S ITG ++
Sbjct: 127 AGIEVAHGLMEAEARALNPGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEAR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFKL 230
V LRA+S A++ GI TVL DDP L R + P+R++LD ++
Sbjct: 187 RDVQRLRAKSCALITGIDTVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRM 246
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
S D+K+ ++ D+ L L + + R L +G
Sbjct: 247 STDAKLFGITGPILLVSAEPYDEKFLHSLPDFVTCLILPGSHGRIDLAALLSHLGENCNR 306
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+LVE G +A +FI + L D ++LY++ ++G G + +
Sbjct: 307 VLVEAGGTLAGAFIAAGLCDELVLYQAPKLLGSHGRDMLQLPDYQTMAEVPGLKLIDERK 366
Query: 346 FGSDVCLEYIG 356
G D +
Sbjct: 367 VGQDWRFTFTV 377
>gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 366
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 124/360 (34%), Positives = 177/360 (49%), Gaps = 14/360 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAGE ARGA
Sbjct: 1 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAGELARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI V +
Sbjct: 61 TAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQCGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
ESE + ++ R R ++ +K+A+S D MA S ITG +++ V LRAQ
Sbjct: 121 LESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLDSKIIKT 239
S +L G TVLAD LT R + P+R+++D ++ LD+ +
Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPFFQA 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V + + DL++L+ L RGV +LVE G +A
Sbjct: 241 GSALVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVEAGPRLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F LVD L+ + +G P PL + + G+D + +
Sbjct: 301 GAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGNDWRVIALP 360
>gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
9485]
gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM
9485]
Length = 409
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 121/384 (31%), Positives = 177/384 (46%), Gaps = 27/384 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL ++ G TS NP V +IVKDG ++G G G PHAEV+AL AGE A
Sbjct: 8 ETYMRRALVLAQQAAGRTSPNPMVGAVIVKDGRIVGEGYHRRAGEPHAEVEALRVAGEAA 67
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGAT YVTLEPC+H GR+PPC II GI V + DP+ VSG+G L+ GI V
Sbjct: 68 RGATMYVTLEPCAHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLAAAGIRVQ 127
Query: 128 RMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ L+ + + R +T K A+S D I S I+ ++ +VH L
Sbjct: 128 CGVCEAEAFELNRPFFKHITTGRPFVTAKFAMSLDGKIATVIGQSRWISNAAARRRVHHL 187
Query: 187 RAQSDAILVGIGTVLADDPELTCRLN---GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R ++DA+LVG GTV+ADDP LT RL P+RI+ D ++ L +K+ L
Sbjct: 188 RNRTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLRIVADSRGRVPLSAKVFDPDLPG 247
Query: 244 PVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
++ T P + L L L RG+ S+LVEGG+
Sbjct: 248 QTVVATTELIPADHRRALVERGVDVWLLPASDDGRVRLSALFDELGRRGMLSVLVEGGSE 307
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYF------ 346
+ + RL+D + ++ + ++IG P P+ + +
Sbjct: 308 LLGACFCERLIDRVWVFMAPLIIGGQHAPGPVGGSGYALLSQAARLGRMHVELIPADDDE 367
Query: 347 --GSDVCLE----YIGKNLCLQEL 364
D+ ++ Y + +C L
Sbjct: 368 SAAPDIWIQADVSYPEEEVCSPVL 391
>gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
Length = 363
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 116/356 (32%), Positives = 183/356 (51%), Gaps = 7/356 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D+++M+ ALR + + TS NP V C++VK V+G G G PHAEV AL
Sbjct: 1 MNAADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALRA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+GATAYVTLEPCSH+GR+PPCA ++ GI+RVV + DP+ +V+G+G+ L
Sbjct: 61 AGKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ ME + +++R + K+A S D +A S ITG ++
Sbjct: 121 GIGVECGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARC 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA+S A+L GIGTVLADDP+L R P+R++LD ++S ++I++
Sbjct: 181 DVQHWRARSCAVLTGIGTVLADDPQLNVREMP-AARQPLRVVLDSELRISSQAEILRNGH 239
Query: 242 L-APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ L+ + DL ++ L RG+ +LVE G +
Sbjct: 240 ALVYTACTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELNG 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ + + LVD ++LY + ++G+ L + GSD+ +
Sbjct: 300 ALLKAGLVDEMVLYLAPQLLGDAARGLAELGELTQLQQRVPLQWQDVRQVGSDLRI 355
>gi|319407322|emb|CBI80963.1| Riboflavin biosynthesis protein ribD [Bartonella sp. 1-1C]
Length = 374
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 153/374 (40%), Positives = 215/374 (57%), Gaps = 12/374 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
M + D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAE
Sbjct: 1 MDKAEQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTALQGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+
Sbjct: 61 VQALLMAGPLAYGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + ++ AYL + +R +TLK+A+S DN IG G GSV I+
Sbjct: 121 ALLRAAGIEVVEGVLADEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKGSVRIS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ L +K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEIRSPIRVILDKDLRIPLCAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289
+++TA P ++ + + C +L +L R + S
Sbjct: 241 VVQTAANIPTWVICSTASSKKRKKIALEQCGVTICSVNTNNNLLSPFAILQLLYQRKINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+++ VD +I + + I++G+ I +P + YL F V G+D
Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPILLGKDRIKAPHFQSYLS-EFNEVEMRMLGND 359
Query: 350 VCLEYIGKNLCLQE 363
++ K LC Q
Sbjct: 360 RLYKWRRKILCSQG 373
>gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
H10]
gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum
H10]
Length = 367
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 108/365 (29%), Positives = 182/365 (49%), Gaps = 11/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ +M L ++ G T+ NP V +I K+G +I G GC HAEV A A
Sbjct: 2 NIHEFYMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFHEALGCAHAEVCAFSNAP 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT YV LEPCSHYGR+PPC + II+ GI+ VVV + DP+ +VSG+G+Q L I
Sbjct: 62 TDISGATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E L+ + KR + +K A++ D I S I+G S+ V
Sbjct: 122 NVIVGVLEEEAKKLNEIFIHYITKRLPFVIMKTAMTLDGKIASVTGDSKWISGEYSREYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL- 242
H +R + +I+VG+ TV+ D+P LT R + P+RI++D ++ ++S++I++
Sbjct: 182 HAIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVDSSGRIPIESRVIQSDSEA 241
Query: 243 ----APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
A + ++ + L + +L++L+ L + S+L+EGG +
Sbjct: 242 GLILATTEKIHKDKETQLLSRGVRIIKTAPKNGKVNLRELMEELYKLEIDSVLLEGGGTL 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + +V+ ++ + S +IG +P+ +EK +R + F DV +E
Sbjct: 302 NFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDAIALSDIRVERFDRDVLIE 361
Query: 354 YIGKN 358
+
Sbjct: 362 GYVAD 366
>gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Streptococcus pneumoniae TCH8431/19A]
gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Streptococcus pneumoniae TCH8431/19A]
gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA04375]
Length = 366
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 113/367 (30%), Positives = 180/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A++ D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTIDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1]
gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas putida F1]
Length = 376
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI
Sbjct: 68 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + +L R + K+A+S D MA S ITG +++ V
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA+S +L +VLAD+ +T R L +P+R+++D +L L +
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGRLRLPLAA 247
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DDP A A + DL LL L RGV +L+E
Sbjct: 248 PFFQA--GPTLVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARGVNEVLLEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA + +F LVD L+ + +G P P+++ G D
Sbjct: 306 GAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGDDWR 365
Query: 352 LEYIG 356
+ I
Sbjct: 366 VTAIP 370
>gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 7_1]
gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 7_1]
Length = 370
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 108/367 (29%), Positives = 188/367 (51%), Gaps = 13/367 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG
Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLE CSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI
Sbjct: 64 ENAKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 124 EVKFGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P RI++DP+ + +++K +
Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRIVVDPNLESPIEAKFLNF 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
+I+ + ++ + + K + K+ IL G + S+L+EGG+
Sbjct: 244 NDGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + ++++ ++ + +IG+ + + + + +G ++
Sbjct: 304 GLISTAFKENIINAGEIFIAPKIIGDNSAIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363
Query: 352 LEYIGKN 358
+E+
Sbjct: 364 IEFEKNK 370
>gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio vulnificus MO6-24/O]
gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Vibrio vulnificus MO6-24/O]
Length = 368
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 105/365 (28%), Positives = 177/365 (48%), Gaps = 9/365 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A
Sbjct: 1 MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L
Sbjct: 61 MRMAGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + L+ ++++ + LK+A S D +A S IT
Sbjct: 121 REAGIEVSVGLLQTEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS AIL TVLAD+ L R + L + + + + +
Sbjct: 181 ARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQL-ALPQEQLRQPTRVVLDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
A L+P + + + + L + + + + + + + + L +E GA
Sbjct: 240 QAELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQSINHLWIEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
+A I +LVD +I+Y + ++G G G + G D+ +
Sbjct: 300 TLAAKLIKHQLVDELIVYLAPKLMGSDGRGLIGALGLQAMSHVIDLDIKDVRMVGPDIRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IAHIK 364
>gi|90424160|ref|YP_532530.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
BisB18]
gi|90106174|gb|ABD88211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodopseudomonas palustris BisB18]
Length = 383
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 151/364 (41%), Positives = 203/364 (55%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D RFM AL R G T+ NP+V +IVKDG+++GRG T GG PHAE++AL AG
Sbjct: 19 AADLRFMQLALSLGRRGQGRTAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEIEALNRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
ARGAT YVTLEPCSH+G++PPCA +I G+ RVV ++DP+ +V+G+G L GI
Sbjct: 79 LAARGATLYVTLEPCSHHGKTPPCADAVIAAGLARVVSAIEDPNPQVAGQGHARLRAAGI 138
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + + HA R+V R H+ LK+AVS D+ I ITG ++ +V
Sbjct: 139 RVDVGLGAAEAAHDHAGHFRRVRDGRPHVILKLAVSSDDKIAATPGQPTAITGEAARARV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQ DAIL+GI T LADDP LTCRL G+++ SP+R++LD +L DS+++ +A
Sbjct: 199 HLLRAQCDAILIGIRTALADDPLLTCRLPGMEKRSPVRVVLDRALRLPGDSRLVHSARST 258
Query: 244 PVI-------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ A A + DL +L L G G+T LLVEGGA
Sbjct: 259 PLWLLASEIAEAAAAAKLGAAGAQIIHVADCDAMPGLDLPAVLQALAGNGITRLLVEGGA 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA S + + LVD + L R + IGEGG+ + PL F + G D
Sbjct: 319 RVASSLVAADLVDEVWLLRGAMTIGEGGVAALDGLPLSVITAAAAFKIRTSETLGPDSLT 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|319404317|emb|CBI77910.1| Riboflavin biosynthesis protein ribD [Bartonella rochalimae ATCC
BAA-1498]
Length = 374
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 154/374 (41%), Positives = 215/374 (57%), Gaps = 12/374 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
M + D RFM+ A+R + H+GLT NPSV LIV++ ++G GVTA G PHAE
Sbjct: 1 MNKAEQDKRFMAVAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTAIQGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+
Sbjct: 61 VQALLMAGPLACGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + +E AYL + +R +TLK+A+S DN IG G GSV ++
Sbjct: 121 ALLRAAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGQGSVRVS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ LD+K
Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEMRSPIRVILDKDLRIPLDAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289
+++TA P ++ + I C +L +L R + S
Sbjct: 241 VVQTAANIPTWVICSTGSLKKRKKIALEQCGITICSVDTNNNLLSPFAILQLLYQRKINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+++ VD +I + + I++G+ I +P + YL F V G+D
Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLS-EFNKVEIRMLGND 359
Query: 350 VCLEYIGKNLCLQE 363
++ K LC Q
Sbjct: 360 RLYKWRRKILCSQG 373
>gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
WA1]
gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae
WA1]
Length = 360
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 172/361 (47%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M A+ ++ G TS NP V +IVKDG VIG G G HAE+ A +A GE
Sbjct: 1 MKMAIEEAKKGEGFTSPNPLVGAVIVKDGKVIGIGYHKKCGENHAEINAFLDAKEKGENV 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
A YVTLEPCSHYG++PPCA II+ ++RV++ D + +V+G G++ L GI V
Sbjct: 61 EDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEVI 120
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E E + + KR I +K A++ D I S IT ++ H
Sbjct: 121 VNVLEEECRKLNEVFFYYIANKRPFIVMKYAMTIDGKIATVSGKSKWITSEKTREHSHRF 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TV+ D+P L CR +P+RIILD K+ LDS I KTA
Sbjct: 181 RNKYSAIMVGINTVIEDNPTLNCR--LPNTRNPIRIILDSSLKMGLDSNICKTAKEIKTF 238
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLLVEGGAAVAHS 301
I T +DD I II + + K L L+ + + S+ VEGGAA+ S
Sbjct: 239 IATISDDDKKIKELENVGIEIIKTENDNGKVSLKDLMRILGEEKDIDSVYVEGGAALHAS 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +LV+ ++Y + + G P+ + D+ LEY
Sbjct: 299 LLKEKLVNKALIYIAPKIFGGFEAKGPIGGEWIDDPNDAVKLVEGSITKIEDDLFLEYYL 358
Query: 357 K 357
K
Sbjct: 359 K 359
>gi|262066887|ref|ZP_06026499.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
ATCC 33693]
gi|291379396|gb|EFE86914.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum
ATCC 33693]
Length = 369
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 110/369 (29%), Positives = 189/369 (51%), Gaps = 14/369 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL
Sbjct: 1 MEKT-VDEKFMARAIELAFKGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ +
Sbjct: 60 NEAGEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIE 119
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + E E K +L K ++ LK ++ D I S IT +
Sbjct: 120 DAGIKVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEAA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235
+ +V LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + ++SK
Sbjct: 180 REKVQFLRTKFTAIMVGINTVLKDNPSLDSRLNEEKYGIEKRNPFRVVVDPNLESPIESK 239
Query: 236 IIKTALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ +I+ + ++ V + + ++ +L L + S+L+
Sbjct: 240 FLHFDDKKAIIVTSSDNRNLEKVKEYENIGTRLIYLEGKVFKMEDILKELGKLNIDSVLL 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGG+ + + +D+ ++ + +IG+ + + + + +G
Sbjct: 300 EGGSGLISTAFKENAIDAGEIFIAPKIIGDNSSIPFISGFNFDSMEDVFKLSNPKFNIYG 359
Query: 348 SDVCLEYIG 356
++ +E+
Sbjct: 360 DNISIEFEK 368
>gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
Length = 356
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 118/355 (33%), Positives = 179/355 (50%), Gaps = 11/355 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ +L +R G TS NP V +IV+D ++G G G PHAE+ AL+ AG++A+GA
Sbjct: 1 MNLSLENARAMKGQTSPNPLVGAVIVRDNEIVGVGAHMKAGEPHAEIHALKMAGDKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVITGV 120
Query: 131 ESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ I + +K +TLK ++ D I A S IT S+ H +R+
Sbjct: 121 LEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETSRYDAHHIRSI 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DAILVG TV+ DDP LT R+ H P+RI+LD L +KI+ + I T
Sbjct: 181 NDAILVGAQTVIHDDPSLTARIPN--GHHPIRIVLDSRLSTPLTAKIVTDQMAPTWIFTT 238
Query: 250 ENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D A L+++L +L R V+SL++EGG + SF+ +
Sbjct: 239 KQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQINASFLEQQ 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
LVD +++Y + +IG PS + + + G D+ +
Sbjct: 299 LVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQLSVETLGKDIKITGYP 353
>gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2]
gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2]
Length = 362
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 129/354 (36%), Positives = 175/354 (49%), Gaps = 9/354 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG
Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI V
Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E L+ + ++TLK A S D A S IT ++ H
Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R ILVG GT+ ADDP LTCR + P+R++LD + L SK+I+
Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCR-LPGAVNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241
Query: 246 IIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I T DP K+ + + D ++ +L L RG+ S+ VEGGA V SF+
Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
L II Y + +IG PS L + G D+ L
Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKVGQDIKL 355
>gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
5427]
gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM
5427]
Length = 363
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 181/362 (50%), Gaps = 15/362 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+M AL ++ G S NP V ++VK+G +IG G G HAEV A++ A +
Sbjct: 1 MHENYMRYALNLAKQGGGKVSPNPLVGAVLVKEGRIIGEGYHEVYGANHAEVNAIKSASQ 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
++ GAT YVTLEPC+HYG++PPC + II+ I RVVV + DP+ V+G G++ L GI
Sbjct: 61 KSEGATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + ++ ++ + LK A++ D I S ITG S+ VH
Sbjct: 121 VIVGILEEECRKLNEIFIKYITKQEPFVLLKAAMTLDGKIATVAGQSKWITGEASREMVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR ILVGIGTV+ DDP LTCRL +P+ I++D ++ + SKII
Sbjct: 181 QLRNAYSGILVGIGTVIKDDPLLTCRLVS--GRNPVIIVVDSTLRIPMSSKIIGGTSKVI 238
Query: 245 VIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ V E ++ L K Y +LK+L+ L G+ S+L+EGGA V
Sbjct: 239 IAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQLGKLGIDSILIEGGAEV 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
S + + +VD + Y + ++G +P+ + ++ G D+ LE
Sbjct: 299 NASALEAGIVDKVQFYIAPQIVGGQA-KTPVAGRGIADLEESIKVENLQIKRIGEDILLE 357
Query: 354 YI 355
Sbjct: 358 GY 359
>gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
70585]
gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
70585]
Length = 366
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIASKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
Length = 376
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 186/365 (50%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 8 LDAHYMARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+GRGL+ L++ GI
Sbjct: 68 RARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRRLAEAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + +L R ++ K+A+S D MA S ITG +++ V
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA+S +L +VLAD+ +T R + L P+R+++D +L LD+
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGRLRLPLDA 247
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DDP A A + DL LL L RGV +L+E
Sbjct: 248 PFFQAGPA--LVVTAVADDPGYAAAGHELLCLPGDNGQVDLAALLHALGARGVNEVLLEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA++ +F LVD L+ + +G P P+E G D
Sbjct: 306 GASLVGAFARLGLVDEYQLFVAGTFLGSHARPLLDWPMERMSEAPRLKITEMRAVGDDWR 365
Query: 352 LEYIG 356
+ +
Sbjct: 366 VTAVP 370
>gi|253581821|ref|ZP_04859045.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium varium ATCC 27725]
gi|251836170|gb|EES64707.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium varium ATCC 27725]
Length = 358
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 11/360 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE
Sbjct: 1 MDKKYMERALELAALGEGYVNPNPMVGAVVVKDGKIVGEGYHKKYGGPHAEVFALEEAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A GAT YVTLEPCSHYG++PPCA+ II+ GI+R ++ DP+ VSGRG++ ++ GI
Sbjct: 61 KAEGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIE 120
Query: 126 VDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ + + K ++ LK ++ D I S IT +++ +V
Sbjct: 121 VVTGIMEKEALELNRVFMKYISTKVPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR + I+VGI TVLADDP LT R+ +P R+++DP + +DSK +
Sbjct: 181 KLRNKYMGIMVGINTVLADDPSLTARIEN--GRNPYRVVIDPFLDIPIDSKFVNFEDGKS 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAHS 301
++I + N+ ++F KK + KL + G+ +L+EGG+ +
Sbjct: 239 ILITSYNNVEKERISFLKKKNVNVIFLEGIDFKLYDILKKIGEIGIDGVLLEGGSFLISK 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ ++D ++ + ++G+ ++ E V+ + +G++V +E+
Sbjct: 299 AFSEDVIDGGEIFIAPKILGDDKAIPFIKGFNFENISDGFQLRNVKINNYGNNVSMEFYR 358
>gi|42520555|ref|NP_966470.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410294|gb|AAS14404.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 360
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 124/357 (34%), Positives = 184/357 (51%), Gaps = 8/357 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A +
Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCIIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V
Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ + + L+ E R I K+A + D I S IT ++N VH
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA
Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFIN 304
++T + +N LK + ++ G+T LLVEGG + +
Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
L+D +I+ RS ++G P + + ++ F + F D+ +
Sbjct: 303 CNLIDRLIICRSGKILGNDATP-FVGDLGIQFINNCYQFKKTKIIEFSEDIVEVWDR 358
>gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016]
gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016]
Length = 368
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 9/365 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A
Sbjct: 1 MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ A ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L
Sbjct: 61 MRMAADKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + L+ ++++ + LK+A S D +A S IT
Sbjct: 121 REAGIEVSVGLLQAEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS AIL TVLAD+ L R + L S R + + + +
Sbjct: 181 ARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPS-SVQRALPQEQLRQPTRVVLDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296
A L+P + + + + L + + + + + + + + L VE GA
Sbjct: 240 QAELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQINLPQLFTQLSQTQSINHLWVEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A I +LVD +I+Y + ++G G L+ + G D+ +
Sbjct: 300 TLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSHVIDLDIKDVRMVGPDIRI 359
Query: 353 EYIGK 357
K
Sbjct: 360 IAHIK 364
>gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 363
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 112/363 (30%), Positives = 179/363 (49%), Gaps = 13/363 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ ++M AL ++ G + NP V LIVKD +IG G G HAEV A+ A +
Sbjct: 1 MNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGAGYHEKYGESHAEVNAINNATK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSG+ ++ L I
Sbjct: 61 SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIE 120
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + K +++ + LK A+S D I + S IT S+ H
Sbjct: 121 VIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LLR + AI+VGI T++ DDPELTCR+ +P+R+I+D + ++ L+SK++ +
Sbjct: 181 LLRNKLSAIMVGINTIIEDDPELTCRIKN--GKNPIRVIVDSNLRIPLNSKVLNNSDKLT 238
Query: 245 VIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++ T+ D + K DLK+L+ L + S+L+EGG +
Sbjct: 239 IVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLNF 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE-Y 354
S + +VD + Y + ++G S + + + D+ +E Y
Sbjct: 299 SALEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDIVIEGY 358
Query: 355 IGK 357
I K
Sbjct: 359 INK 361
>gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54]
Length = 366
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 180/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A+S D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|84687686|ref|ZP_01015559.1| riboflavin biosynthesis protein RibD [Maritimibacter alkaliphilus
HTCC2654]
gi|84664269|gb|EAQ10760.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
HTCC2654]
Length = 367
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 137/359 (38%), Positives = 183/359 (50%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM AL R +G NP+V C+IV ++GRG T GG PHAEV AL +AGE
Sbjct: 3 DERFMDLALSLGRRGLGSVWPNPAVGCVIVNGARIVGRGWTQPGGRPHAEVVALAQAGEA 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+G++PPCA +I GI RVVV + DPD RV+GRG+ L GI V
Sbjct: 63 ARGATAYVTLEPCSHHGQTPPCAVALISAGIARVVVALGDPDNRVNGRGIAMLRAAGIEV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
E+E + +L+R R +TLK+A S D I A S ITG ++ QVH
Sbjct: 123 VTGLGEAEARADQVGFLSRVERGRPMVTLKLAASLDGRIATATGESQWITGPEARRQVHA 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DA++VG GT ADDP LT R P+R++L H + LDS + +TA PV
Sbjct: 183 ERMIHDAVMVGAGTARADDPSLTVR-GLGARRQPVRVVLSRHLDIPLDSVLARTAKEVPV 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAAVAH 300
++ + P +A + L ++ L G+T + EGG +A
Sbjct: 242 WLIHGDRAPDGVVAAWEGLGARCIAVPVVLGRIDVAAALAALGAAGLTRVFCEGGGGLAA 301
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S + LVD + + + I +G G PS + V G DV +
Sbjct: 302 SLLAEGLVDEYVGFTAGIALGAEGWPSIAAMGVGALADAPRLELVELRAIGGDVLHRWR 360
>gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae
GA41317]
Length = 366
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 113/367 (30%), Positives = 180/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E
Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V
Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + ++ + ++ +K A++ D I S IT ++ VH
Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNQSKWITEEEARKHVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA
Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
I T ++D ++ I+ + L+ L + SL++EGG+ + S
Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G P+ + G+D +E
Sbjct: 301 ALEQQIVDELKIYIAPKIFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359
Query: 357 KNLCLQE 363
C QE
Sbjct: 360 IYPCSQE 366
>gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612]
Length = 367
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 13/368 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + G + NP V +IVK+G VIGRG G PHAE A+ E+
Sbjct: 3 DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKNGCVIGRGAHERYGGPHAERNAIAHCTED 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ AT YVTL PC H+G++PPC ++E GIRRVV+ DP+ V+ + ++ L Q G+ V
Sbjct: 63 LQDATLYVTLTPCCHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGVEV 122
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+ + R ++ +K A++ D + A S ITG +++ +VHL
Sbjct: 123 TTGILQQECDALNDAFFHFIRIHRPYVVMKYAMTMDGKVATASGKSKWITGELARERVHL 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + AIL GIGTVLADDP LTCR+ G P+RI+ D ++ L ++I+KTA
Sbjct: 183 DRKRYAAILTGIGTVLADDPLLTCRIPG--GRDPVRIVCDTKLRIPLTAQIVKTAAKTRT 240
Query: 246 IIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
II T + D + + DLK L+ L + S+L+EGG + +
Sbjct: 241 IIATGSGDNKKQSLLKQKGCEVLKMTVENGRIDLKALMRRLGEMAIDSILMEGGPQMNSA 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ S +V+ I Y + + G +P+ + G D+ LE
Sbjct: 301 ALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPEAAWRLSAPVITKLGQDILLESEV 360
Query: 357 KNLCLQEL 364
+ CLQEL
Sbjct: 361 VS-CLQEL 367
>gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2]
Length = 369
Score = 219 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 195/362 (53%), Gaps = 13/362 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE
Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124
Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSKIIKTA 240
LR + AI+VGI TVL D+P L RL+ +++ +P R+++DP+ + +++K +
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAA 297
+II + ++ + + K + K+ IL G + S+L+EGG+
Sbjct: 245 DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGSG 304
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMC--VRRDYFGSDVCL 352
+ + ++D+ ++ + +IG+ + G +E+ F + + +G ++ +
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNFGNMEEVFKLPNPKFNIYGDNISI 364
Query: 353 EY 354
E+
Sbjct: 365 EF 366
>gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
Length = 364
Score = 219 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 130/365 (35%), Positives = 188/365 (51%), Gaps = 11/365 (3%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP S D M A+ + TS NP V C+I + G ++G+G G PHAEV A
Sbjct: 1 MPQFSHADHALMQQAIALAWQGRFSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG A+GATAYVTLEPC+H+GR+PPCA+ +I G+RRVV + DP+ V G+GL L
Sbjct: 61 LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V ME E + +L+R R + LK A S D +A S ITG
Sbjct: 121 EAAGIQVACGLMEREARQLNRGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ V + RA+S A+L GIGTVLAD+P LT R P+R++LD +L S ++
Sbjct: 181 ARHDVQIQRAESCAVLTGIGTVLADNPRLTVRDFP-TLRPPLRVLLDSRLRLPAGSHLLD 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ AP +I T +D P A A + L +L L RG+ L++E GA +
Sbjct: 240 GS--APTLIYTLSDRPAPAGAAEICRLEADAQGRLSLNAVLADLAARGIGELMLEAGATL 297
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352
+F+ LVD I+ Y++ ++G P+ E ++ V + G D+
Sbjct: 298 GSAFLAQDLVDEIVCYQAPKLLGGAQSPTLFRLPENPAALSREPDWHTVGIEQLGDDIKW 357
Query: 353 EYIGK 357
+
Sbjct: 358 VLQRR 362
>gi|257467357|ref|ZP_05631668.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
gonidiaformans ATCC 25563]
gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium gonidiaformans ATCC 25563]
gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium gonidiaformans ATCC 25563]
Length = 359
Score = 219 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 181/359 (50%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE
Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V G+G+ + GI V
Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGIEV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + +L K + LK ++ D + S IT I++ +V
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRDFQSKWITNEIAREKVQQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TV+ D+P L R+ ++ RII+DP+ ++ L SK++ V
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENGRDPY--RIIVDPYLEIPLSSKLLHRHDKKTV 240
Query: 246 IIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
II + L + + ++L + G+ S+L+EGG + S
Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
++D ++ + ++G+ + + E V +G++ +E+
Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359
>gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium
sp.]
Length = 380
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 123/364 (33%), Positives = 184/364 (50%), Gaps = 14/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ + G TS NP V ++VKDG V G+G G HAEV A+++A +
Sbjct: 16 DDLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKDGKVAGKGYHEAYGKAHAEVNAIDDAKK 75
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
++ GAT YVTLEPC+H+G++PPC + IIE GI+RVV + DP+ V G G ++L GI
Sbjct: 76 DSFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGID 135
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + ++ KR + +K A + D I S +TG S+ VH
Sbjct: 136 VIFGVCGKEAEKQNEIFIKYTKTKRPFVMVKCASTLDGNIATKTGDSKWVTGEESRQFVH 195
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR SDAI+VGI TV D+PELT R++G+ SP+R+ILD +S D+ ++ +
Sbjct: 196 RLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSPVRVILDSRLSISEDALVLNKNSDSD 255
Query: 245 VIIVTENDDPVL---------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I+V N P K + + +L L+ L G+TSLL+EGG
Sbjct: 256 TIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAENNLINLDILMDTLGLMGITSLLIEGG 315
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVC 351
+ V S + ++VD I + + ++G G+ G V FG D+
Sbjct: 316 SRVIASAFSQKIVDKIFFFYAPKILGGDGVSICRGPGPALMRDCLPVKEVGIQKFGDDIL 375
Query: 352 LEYI 355
+E
Sbjct: 376 IEGY 379
>gi|260425443|ref|ZP_05779423.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
gi|260423383|gb|EEX16633.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45]
Length = 363
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 135/362 (37%), Positives = 191/362 (52%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M+ ALR R +G NP+V C+IVKDG VIGRG TA GG PHAE QAL +AG
Sbjct: 2 TQDIRHMAHALRLGRRRMGQCWPNPAVGCVIVKDGRVIGRGATAPGGRPHAEPQALAQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
ARGAT YVTLEPC+H+G++PPCA+ +++ G+ RVV + D D RVSG+G + L + GI
Sbjct: 62 VAARGATVYVTLEPCAHHGKTPPCAEALVKAGVARVVAPLADSDPRVSGKGFEHLRRHGI 121
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + +E HA + E R +TLK+A S D I A S ITG ++ V
Sbjct: 122 EVTTGVLAEEAARDHAGFFLKVGEGRPLVTLKLANSFDGRIATATGESQWITGPEARRVV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LRA DA++VG GT +DDP LT R G + P+R+++ + L SK+ TA
Sbjct: 182 HGLRAAHDAVMVGAGTARSDDPALTVRGWG-EVRQPVRVVVSRLIDVPLMSKLASTARQV 240
Query: 244 PVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
PV + +D + I D LL L +G+T + EGG +
Sbjct: 241 PVWLAHGSDAAPATRKAWQSCGAKLIPCEIRAGRVDPHGLLRELGEQGLTRVFCEGGGQL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S +++ LVD ++ + + + +G G P ++ F+ G DV +
Sbjct: 301 AASLLSADLVDELVGFTAGLALGAEGRPGIGAMGVDRLSEAPRFVLDEVRAVGPDVMHRW 360
Query: 355 IG 356
Sbjct: 361 RR 362
>gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2]
Length = 368
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 127/359 (35%), Positives = 194/359 (54%), Gaps = 10/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+ +MS AL + G T NP V C++VKDG +IG G G HAEV AL+ AG+E
Sbjct: 6 DSYYMSLALELAAKASGQTGINPVVGCVVVKDGRIIGVGTHLKRGTGHAEVHALQMAGDE 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPCSHYG++PPC + II RVVV DP+ +V+GRG+ L ++GI V
Sbjct: 66 AEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIEV 125
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ +E + + + + ++TLK A + D I S ITG ++ QVH
Sbjct: 126 EVGLLEEQSRSMNEKFNKYITSRLPYVTLKTASTLDGKIASHTGDSRWITGSTAREQVHT 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR Q +AI+VGIGT+LADDP+LT R + P+RII+D +L LD++++ L +
Sbjct: 186 LRHQHEAIMVGIGTLLADDPQLTTR-AAVPAIHPVRIIVDSQLRLPLDARVVTDGLARTI 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHSF 302
++ + DP A + + +I C + L + G + S+L+EGG + +
Sbjct: 245 VLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMRKLGELEIGSILLEGGGKLNGAM 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + L+D I++Y + +IG P + E+ V+ + G D+C+
Sbjct: 305 LEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEAIELDHVKVEMAGEDICISGYP 363
>gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453]
Length = 366
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 118/359 (32%), Positives = 181/359 (50%), Gaps = 10/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +MS AL + G T NP V C+IVK+G + G G G PHAE+ AL AG +
Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVIVKNGALAGVGTHLERGTPHAEIHALNMAGTK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSHYG +PPC++ +I G++RVVV +DP+ V+G+G+Q L GI V
Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIEV 125
Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + L+ + + + +TLK A + D I S I+ S+ VH
Sbjct: 126 VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLDGKIASKTGDSKWISSEESRELVHT 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TV+AD+P LT R + P+RII+D ++ LDS ++
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTR-LSVGGLHPVRIIVDSSLRMPLDSHVVSDGTAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHSF 302
I+ TE D ++ I +I C L + G++S+L+EGG + +
Sbjct: 245 ILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIAKLGQMGISSILLEGGGTLNGAM 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +LVD +I + + +IG P S E+ + G ++ + I
Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNFMFSGYEQMNQAIVLTGLESKRLGDNIYITGIP 363
>gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99]
Length = 367
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 121/360 (33%), Positives = 185/360 (51%), Gaps = 11/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHK 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLAL---AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N + K +L ++L +L +G++SLL+EGG V SF
Sbjct: 242 IFTTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGRKGISSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
I + L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 302 IENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDYRFIGYPE 361
>gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
Length = 376
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 181/365 (49%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 8 LDAHYMARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI
Sbjct: 68 RARGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E++ + +L R + K+A+S D MA S ITG +++ V
Sbjct: 128 VASGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA + +L +VLAD+ +T R L +P+R+++D +L LD+
Sbjct: 188 RLRASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGRLRLPLDA 247
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DD A + DL L+ L RGV +L+E
Sbjct: 248 PFFQAGPA--LVVTAMGDDTRYGQAGHELLSLPGSNGQVDLLALMQALAARGVNDILLEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA + +F L+D L+ + +G P PL + G D
Sbjct: 306 GAGLVGAFAQLGLIDEYQLFVAGTFLGSQARPLLDWPLSKMSEAPRLKITEMRAVGDDWR 365
Query: 352 LEYIG 356
+ I
Sbjct: 366 VTAIP 370
>gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon
phaeoclathratiforme BU-1]
Length = 366
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL + G S NP V +IV DG +IG G G PHAEV A+ +
Sbjct: 5 DDLFFMRRALELAVLGAGSVSPNPMVGAVIVCDGEIIGEGYHQQFGGPHAEVHAIASVED 64
Query: 66 E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E +T YVTLEPCSH+G++PPC+ I+E GI RVV+ DP V+V+G+G+ L G
Sbjct: 65 EALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAAG 124
Query: 124 IIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + I A++ + LK+A + D I + S ITG S+++
Sbjct: 125 IRVTEGVLEAECIGCNEAFIKSHTTGLPFVCLKLAQTLDGKIATSLGASRWITGEESRSE 184
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR+ DA++VG TV ADD +LT R +P R++LD +L L+SKI +
Sbjct: 185 VHRLRSIYDAVMVGEATVRADDAQLTVRNCS--GRNPQRVVLDSQLRLPLESKIFGSEAP 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298
V+ T R++ + +++ D DL++ L L RG+ S+LVEGG+ +
Sbjct: 243 TIVVASTSFSASPKVAQLRERGVTVLFVDEHVGKLDLRQALVELHKRGILSVLVEGGSRL 302
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ +F+ +LVD I+++ + + G + + + + R +FG D+ LE
Sbjct: 303 SAAFVREKLVDKILIFVAPKLFGGDALSAFAPLGVSMPDQAVDLRFGRPHFFGHDLLLEA 362
Query: 355 I 355
Sbjct: 363 Y 363
>gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
Length = 362
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 123/353 (34%), Positives = 192/353 (54%), Gaps = 5/353 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +MS AL ++ GLT NP+V C++V +G ++G G G PHAEV ALE+AGE+
Sbjct: 3 DVGYMSLALSLAKRRKGLTHPNPTVGCVVVNEGEIVGLGYHEGAGHPHAEVVALEQAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+G+T YVTLEPC+H+GR+PPC +I GIR+ VV V DP+ V G+G++ L + G+ V
Sbjct: 63 AKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLDV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E E + + T KR ++TLK+A + D + S I+ S+ H
Sbjct: 123 EVGVLEEEARELNEDFFTFITMKRPYVTLKLAQTLDGKVATPSGDSKWISSPESRRFAHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR+++ A+LVG+ T L D+P LT R P+RI++DP ++ +DS ++ +
Sbjct: 183 LRSEATAVLVGLNTFLRDNPSLTIRHIP-FGRQPLRIVIDPELEIPMDSNLVSDGMAQ-T 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
++V DP + ++Y + +L +LL L R V LLVEGGA F+
Sbjct: 241 LVVFSRRDPAKESELLGAGVQLLYMEKIELGELLKELASRDVLHLLVEGGAYTVSQFLKE 300
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
L D ++++++ V+G+G S L + R G D EY+
Sbjct: 301 GLWDRLVVFQAPRVMGDGISLSGLGVDRVNDCLKLKIRREHALGEDRVFEYVP 353
>gi|307825581|ref|ZP_07655799.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
SV96]
gi|307733467|gb|EFO04326.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
SV96]
Length = 361
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 190/363 (52%), Gaps = 10/363 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S DA +M+ A+ ++ T NP V C++V+DG VIG+G G HAEV+AL
Sbjct: 1 MS-SVRDAFYMAQAISLAKKGRYTTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ +A+GATAYVTLEPCSH GR+PPC +I+ G+ RVV + DP+ +VSG GL+ L
Sbjct: 60 KNV-PDAKGATAYVTLEPCSHQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLK 118
Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + E + L+ ++ R + R + K+A+S D MA S IT +
Sbjct: 119 VAGIEVICGVLQEDALALNRGFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEA 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRA+S AIL GI TVLADDP L R++G P+R++LD H + + +++ K
Sbjct: 179 RADVHRLRAESSAILTGINTVLADDPALNARVDGDVL-QPVRVVLDTHLNMPVTAQMAKL 237
Query: 240 ALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ ++ +++ L + DL+ ++ L + + LLVE G+
Sbjct: 238 PGRSLILTCAQDEQKQGALQQVGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSV 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + ++ VD ++Y + ++G+ G L++ +K G D+ L
Sbjct: 298 LNGALLDEDWVDEYVIYMAPCILGDQGRGLFNLPGLQQMADKKQLKLRDVRQVGQDLKLT 357
Query: 354 YIG 356
Y
Sbjct: 358 YTP 360
>gi|300087628|ref|YP_003758150.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527361|gb|ADJ25829.1| riboflavin biosynthesis protein RibD [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 362
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 110/362 (30%), Positives = 174/362 (48%), Gaps = 14/362 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL+ + +G S NP+V ++VKD ++G+G T G HAEV AL +AG ++GA
Sbjct: 1 MQQALKLAGLALGEVSPNPAVGAVVVKDDEIVGQGYTQPPGQEHAEVMALNQAGARSQGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC+H GR+PPC II GI+ V D + V G+G L+ GI V
Sbjct: 61 VMYVTLEPCAHQGRTPPCTDAIIAAGIKEVHFATLDDNPVVFGKGKAALTAAGIEVHVGE 120
Query: 131 ESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L+ + + +T K A+S D I S I+ S+ H LR +
Sbjct: 121 HRDAARELNEAYFKYINTGLPFVTAKFAMSLDGKIATRTGDSKWISNDESRAFAHSLRHE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+DAI+ G+GTV+AD+P+LT R P+RI++D H + + + +
Sbjct: 181 ADAIMAGVGTVIADNPKLTARCCAGSGGTSHKQPLRIVVDSHGRTPDTAVLFHEPGRTIL 240
Query: 246 II---VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V+E A + DL L++ L + +TS++VEGG+++ S
Sbjct: 241 AFGGQVSEERRIPYTQAGAELESFPDGNGRVDLPALMSFLGKQQITSVIVEGGSSLLGSM 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356
++ LVD +I++ + ++IG GG + + E R G D + Y+
Sbjct: 301 FDAGLVDKVIVFIAPMIIGGGGALTAVGGNGAETLDQACRLEKTRTWRLGEDTVITGYVN 360
Query: 357 KN 358
K+
Sbjct: 361 KD 362
>gi|257453179|ref|ZP_05618478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
sp. 3_1_5R]
gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 3_1_5R]
gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 3_1_5R]
Length = 359
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 182/359 (50%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE
Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V+G+G+ + GI V
Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGIEV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + +L K + LK ++ D + S IT I++ +V
Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRNFQSKWITNEIAREKVQK 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TV+ D+P L R+ ++ RII+DP+ ++ L SK++ V
Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENGRDPY--RIIVDPYLEIPLSSKLLHRHDKKTV 240
Query: 246 IIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
II + L + + ++L + G+ S+L+EGG + S
Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
++D ++ + ++G+ + + E V +G++ +E+
Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359
>gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681]
Length = 366
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 178/362 (49%), Gaps = 13/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AG
Sbjct: 2 TTHEKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A+GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI
Sbjct: 62 EHAQGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGI 121
Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + + V KR IT+K AV+ D I S IT ++ V
Sbjct: 122 EVIVGVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR + ILVG+ TV+ D+P+LT RL +P+RIILD ++ LD+++I
Sbjct: 182 HRLRNEHVGILVGVQTVIHDNPQLTTRLPE--GRNPIRIILDSKLRIPLDARVITDGEAP 239
Query: 244 PVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
I D + + +L ++L IL V+S+ VEGGA V
Sbjct: 240 TWIFTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDILGAAEVSSVFVEGGAEV 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
SF+ L D ++LY + ++G P L + + G D +E
Sbjct: 300 NASFVQQGLADRLVLYIAPKLVGGRAAPGFLGGEGVSAMSDAVALHDLSVTPVGVDWKIE 359
Query: 354 YI 355
Sbjct: 360 GY 361
>gi|319898992|ref|YP_004159085.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
gi|319402956|emb|CBI76507.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73]
Length = 374
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 154/374 (41%), Positives = 220/374 (58%), Gaps = 12/374 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
M + D RFM+AA+R + H+ LT NPSV LIVK+ ++G GVTA G PHAE
Sbjct: 1 MSREAQDKRFMAAAIRLAERHINLTGKNPSVGALIVKNNETDASIVGYGVTAVQGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
VQAL AG A GATAY+TLEPCSHYG++PPC +I+ GI RVV+ + DPD RV GRG+
Sbjct: 61 VQALLMAGPLAYGATAYITLEPCSHYGKTPPCVNALIDAGIARVVIALPDPDQRVYGRGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + +E AYL + +R +TLK+A+S DN +G G ++ I+
Sbjct: 121 ALLRSAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGVGKKGQSNLKIS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G IS +Q H+LRAQ+D I+VGIGT+LADDP+L CRL GL+ SP+R+ILD + ++ LD+K
Sbjct: 181 GEISHSQTHILRAQNDVIMVGIGTILADDPKLDCRLPGLEMRSPIRVILDKNLRIPLDAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTS 289
+++TA P ++ + + C + +L +L R + S
Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVTVCSVEANNNLIPPLAILRLLYQRKINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+N+ VD +I + + I++G+ I +P E YL F + G+D
Sbjct: 301 VLLEGGAKTGEIFLNASCVDRLICFYAPIILGKDRIEAPHFESYLS-EFNKIEMRMLGND 359
Query: 350 VCLEYIGKNLCLQE 363
++ K LC Q
Sbjct: 360 RLYKWRRKILCSQG 373
>gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinobacter sp. ELB17]
gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinobacter sp. ELB17]
Length = 371
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 15/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D FM+ A++ + T NP V C+I + ++G G HAEV+AL +
Sbjct: 2 ITTRDRAFMARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG+TAYVTLEPCSH+GR+PPCA+ +IE G+ RV DP+ VSGRGL+ L
Sbjct: 62 AGTSARGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +++ R + LK+A S D MA S ITG S++
Sbjct: 122 GIRVHVGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRS 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLD 233
V LRA SDAIL G+GTVLADDP LT R + P+R+I D +
Sbjct: 182 DVQRLRAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPAS 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+KI + + + + ++ ++L L G+ +
Sbjct: 242 AKIFRGGKVQVFCATASLATSAAQDLAALGIRLRGVAWHDKGVNVAEMLDTLGDIGINEV 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
LVE G +A SFI+ LVD + LY++ + +G G P+ PLE + + + R G
Sbjct: 302 LVEAGPTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQLG 361
Query: 348 SDVCLEYIGK 357
+D L +
Sbjct: 362 ADQRLILARR 371
>gi|161504399|ref|YP_001571511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160865746|gb|ABX22369.1| hypothetical protein SARI_02510 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 367
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 173/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPDVGCVIVNNGEIVGEGYHQRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+G GL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGCGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
100599]
gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC
100599]
Length = 368
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 186/362 (51%), Gaps = 9/362 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D+++M AL +R G TS NP V +IVKDG ++G G G PHAEV AL AG
Sbjct: 2 EQDSKYMDLALELARSARGQTSPNPMVGAVIVKDGTIVGMGAHLRAGEPHAEVHALRMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A+GAT YVTLEPCSHYG++PPCA+ +I +RRVVV DP+ V+GRG++ L G+
Sbjct: 62 EKAQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGV 121
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + +R +T+K A + D I S ITG ++ +V
Sbjct: 122 EVAVGVREEEAKALNEVFFHYIQTRRPFVTVKTASTLDGKIASFTGHSRWITGAEARAEV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALL 242
H LR Q DAILVG+GT+LADDP LT R + P+R+ILD + LD+ +++ A
Sbjct: 182 HELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPVRVILDSQLRTPLDAHVVQNADA 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHS 301
I T+ + + +I +K+L L G+TSLLVEGG V S
Sbjct: 242 KTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVLDTLGELGITSLLVEGGQEVNGS 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGS-DVCLEYI 355
F+ +R + ++ + + +IG PSP V G DV +
Sbjct: 302 FLQARAIQKVVSHIALKLIGGSSAPSPFGGQGFSTMGEAVQLANVTITPIGKSDVQISGY 361
Query: 356 GK 357
+
Sbjct: 362 PQ 363
>gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Vibrio sinaloensis DSM 21326]
gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Vibrio sinaloensis DSM 21326]
Length = 368
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 106/357 (29%), Positives = 173/357 (48%), Gaps = 8/357 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
SS D + MS A+ ++ V T+ NP+V C+I ++ V+G G G PHAEV AL
Sbjct: 4 FSSIDFQMMSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRM 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ DP+ +V+GRG++ L
Sbjct: 64 AGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDA 123
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + L+ ++++ ++ LK+A S D +A S IT ++
Sbjct: 124 GIEVEVGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQ 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RA+S AIL TV+ D+ L R + L E R + + +
Sbjct: 184 DVQQWRARSGAILSTSKTVIEDNASLNVRWSELPESIQQR-YSQTDLRQPTRVILDRQNK 242
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVA 299
L P + + + L ++ + + + + L + + + VE GA +A
Sbjct: 243 LTPDLKLFHSPGERLVVSEHGEVAMSLNEQQQIDLEATLACLAQQHNINHVWVEAGATLA 302
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
S I +LVD +ILY + ++G LE + G D+ +
Sbjct: 303 SSLIREQLVDELILYFAPKLMGSDSRGLLGALGLESMTDVIDLNIKDVRQVGKDIRI 359
>gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
33394]
gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
33394]
Length = 369
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 172/362 (47%), Gaps = 8/362 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S DA M A+ + TS NP V C+I G ++G+G G PHAEV AL
Sbjct: 7 EFSELDAAHMRRAIELAWLGRFSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALR 66
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV+ + DP+ V+G+G+ L
Sbjct: 67 QAGDLARGATAYVTLEPCSHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQA 126
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E + +L+R +R ++LKIA S D G++ S ITG ++
Sbjct: 127 AGISVQCGLLADEARALNRGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEAR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RAQS A+L G+GTVL D+P L R P+R+ILD + S +I+
Sbjct: 187 ADVQRQRAQSCAVLTGVGTVLHDNPRLNVRQFP-IVRQPLRVILDSRLRTPESSHMIQDG 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVA 299
+ + + A D R +L L G+ L+VE G +
Sbjct: 246 QATQIFTLQKQPALFAAYPNVSVRQCAANADGRIALPDVLARLAEDGIGELMVEAGCTLN 305
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLEY 354
+F+ L D I+ Y+S ++G + + G+D+
Sbjct: 306 SAFLQQNLADEIVYYQSAKILGSNAQAAFSLPENPAVLQQNAEWQTADVQILGNDIKWTL 365
Query: 355 IG 356
Sbjct: 366 RR 367
>gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5-
phosphoribosylamino)uracil reductase [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 369
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 106/364 (29%), Positives = 189/364 (51%), Gaps = 13/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M+ A+ ++ +G + NP V ++VKDG +IG G G PHAEV AL EAGE
Sbjct: 5 LDEKYMARAIELAQKGIGGVNPNPLVGAVVVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + + GI
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGID 124
Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 125 IKLGVLEKEAKDVNKIFLKYIENKVPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + +++K +
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244
Query: 241 LLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+I+ + ++ + + ++ +L L + S+L+EGG+
Sbjct: 245 DNKAIIVTSSDNKNLEKIKVYEKLGTKFIFLEGKTFKMEDILKELGKLEIDSVLLEGGSE 304
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ + ++D+ ++ + +IG+ + + F + + +G ++ +
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNSAVPFINGFNFDSMEDVFKFSNPKFNIYGDNISI 364
Query: 353 EYIG 356
E+
Sbjct: 365 EFEN 368
>gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Halanaerobium praevalens DSM 2228]
Length = 379
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 20/376 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D ++M AL+ + VG TS NP V +IVK+G +IG G G HAEV AL +
Sbjct: 4 FSISDQKYMDRALKLAALAVGKTSPNPLVGAVIVKNGEIIGEGYHQKYGAQHAEVNALAK 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +A GA +V LEPCSH+G++PPC Q II G++RVVV + DP+ +V+GRG++ L +
Sbjct: 64 AGFKAEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKA 123
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + ++ K +L + + LK A + D I + S IT ++
Sbjct: 124 GIKVEIGLLAAKAKKLNEIFLKYITSELPFVYLKKAQTLDGYIATSSSDSKWITNEQARK 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ H LR + DAILVGIGT+LADDP LT RL + P+RIILDP ++ +D++II+
Sbjct: 184 EGHKLRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRIILDPLLEIPIDAQIIEQKS 243
Query: 242 LAPVIIVTENDDPVLAL--------------AFRKKNINIIYCDCRDLKKLLTILVGRGV 287
A +I+T + P + + + + DLKK+L L + +
Sbjct: 244 EAETLIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVDANNYFDLKKILKYLHQQKI 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVR 342
S+LVEGGA ++HSF+ +L+D + + + G + + N +
Sbjct: 304 ASILVEGGAKLSHSFLAQKLIDKFYYFIAPKIYGGNDGCASFSGSGPKLMADTVNLEIIE 363
Query: 343 RDYFGSDVCLEYIGKN 358
+ ++ L + KN
Sbjct: 364 QRNLADNILLIAVSKN 379
>gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
8327]
gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB
8327]
Length = 371
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 172/365 (47%), Gaps = 13/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D M L + G S NP V +IV DG VIG G G PHAE A+
Sbjct: 7 MRPEDEGHMRRCLELAERGAGSVSPNPMVGSVIVHDGRVIGEGWHQKYGGPHAEPHAIAS 66
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E R +T YV LEPCSH+G++PPCA I+E I RVVV DP +V+G+G+ L
Sbjct: 67 VEDEALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLR 126
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V + L+ K R + LK A + D I + S ITG S
Sbjct: 127 EAGVEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEAS 186
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +VH LR DA+L G T LADD ELT R P+R++LDP ++ + +I
Sbjct: 187 RCEVHRLRCAYDAVLCGASTALADDAELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFND 244
Query: 240 ALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
A V + + +P L + + DL ++ L R V S++VEGG
Sbjct: 245 AAKTLVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDLAQVFAELHRRRVLSVMVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ ++ + + S +VD ++ + + G+ G+PS + + R + FG D+
Sbjct: 305 SRLSAAMVRSGIVDKYYVFIAPKLFGDDGLPSFGPLDVIRPDMATKLSFTRVERFGEDLL 364
Query: 352 LEYIG 356
+E
Sbjct: 365 VEAYP 369
>gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
formigenes OXCC13]
gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
formigenes OXCC13]
Length = 363
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 110/360 (30%), Positives = 179/360 (49%), Gaps = 10/360 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ +FM AL +R LTS NP V C+IV+DG +IG G T G HAEV+AL +
Sbjct: 2 ADHEKFMRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVA 61
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G++ RGAT YVTLEPCSH GR+PPCA +I ++RVV ++DP+V+V+G+GL L
Sbjct: 62 KRGQDCRGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKA 121
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E + +L+R R + +K+A S D + S IT ++
Sbjct: 122 AGIEVLCGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAAR 181
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R ++DAI+ GIGTV+ D+P L RL P RI++D K +D+++++
Sbjct: 182 RDGHEWRMRADAIMTGIGTVIKDNPRLNVRLPDTIR-QPKRIVVDSQLKTPIDARVLENG 240
Query: 241 LLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + + + + I DL ++ +L + + + VE GA +
Sbjct: 241 GDTWIFSANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGATL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + VD +++Y + +G G + + + +F +D+ +
Sbjct: 301 NGALIQAGFVDEMLIYLAPCFLGSGKNMVSLNDIANLADKISFEFHEIRTIENDIRIIAR 360
>gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 358
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 125/356 (35%), Positives = 185/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGA
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N A K +L ++L +L +GV+SLL+EGG V SFI ++
Sbjct: 239 SNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L++ +ILY + +IG PS + + K F + G D +
Sbjct: 299 LMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 354
>gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521]
gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 360
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 111/360 (30%), Positives = 176/360 (48%), Gaps = 11/360 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M AL + VG+ + NP V +IVKD VIG G G HAE A++ A E
Sbjct: 1 MDEFYMKRALELAIKGVGMVNPNPMVGAVIVKDNKVIGEGFHEKYGHAHAERNAVKNAVE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GAT YVTLEPC+HYG++PPC +IE +R+VV+ + DP+ V+G+ ++ L + I
Sbjct: 61 DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + ++ K+ + +K +S D I +G S IT S+ H
Sbjct: 121 VKVGVKEKECRKLNEVFIKYITTKKPFVIMKAGISIDGKIATSGGESKWITSERSRLHSH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR + I+VGI TVL+DDP LT R + P+RII+D K+ +SK+IK
Sbjct: 181 ELRNRMSGIMVGINTVLSDDPSLTYR-GEHKGKDPLRIIIDSTLKVPFESKVIKYNNNNT 239
Query: 245 VIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++ EN D + K DL++++ L + S+L+EGG +
Sbjct: 240 IVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVVERLGKDKIDSILLEGGGTLNF 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + +VD + Y + +IG + + N + + G+++ +E
Sbjct: 300 SALKEGIVDKVRFYIAPKIIGGQNSKNSVSGQGFYNLDDCVNLKDMSYEQMGNEIVVEGY 359
>gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676]
Length = 358
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/356 (35%), Positives = 186/356 (52%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGA
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N +A K +L ++L +L +GV+SLL+EGG V SFI ++
Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F V G D +
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRFIGYPE 354
>gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
Length = 359
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 117/363 (32%), Positives = 178/363 (49%), Gaps = 12/363 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P + D + M AL + TS NP V C+I ++G+G G PHAEV AL
Sbjct: 3 PFTHQDTQHMQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Q
Sbjct: 63 QAGALARGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQ 122
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G E+E + +L+R +R + LKIA S D +A S ITG ++
Sbjct: 123 AGTQTASGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V + RA+S A+L GIGT+LAD+P+L R+ +++ P+RI+LD + S+II+
Sbjct: 183 ADVQIQRAESCAVLTGIGTILADNPQLNVRIPTIRQ--PLRIVLDRQLRTPARSRIIQDG 240
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ P A + L + + L+VE G+ +A
Sbjct: 241 GETLIC----TQSPANPFADYPNVHIYRQPENDLSSLLAHLAREHQIGELMVEAGSTLAT 296
Query: 301 SFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+FI + L D I+ Y++ ++G+ P + V + G D+
Sbjct: 297 AFIQADLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDIKWVLQ 356
Query: 356 GKN 358
K
Sbjct: 357 RKR 359
>gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506]
Length = 388
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 186/362 (51%), Gaps = 8/362 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P FDA M + +R +G T+ NP V IV+DG+V+G G G PHAEV AL
Sbjct: 26 PRQDFDAAMMRRCIELARCALGKTAPNPLVGSAIVRDGLVVGEGFHPGAGMPHAEVFALR 85
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAGE+A GAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ VSG G+ L +
Sbjct: 86 EAGEKALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLRE 145
Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E E + A++ R + +R LK A++ D I + S +TG ++
Sbjct: 146 AGIEVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLDGKIATSSGHSAWVTGEEAR 205
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+QVH LR DA++VG TV D+P+LT G H+P+R+++ L S++ +T
Sbjct: 206 SQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEG--RHNPLRVVMSRTLDLPKSSRLWETG 263
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ +++ E +P + + ++ + L R S+L E G +A
Sbjct: 264 DASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYDRSFLSVLWECGGILAA 323
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
S I V I+ + + ++G G PSP+ + + V G+D +E
Sbjct: 324 SAIADGSVQKILAFIAPKIVGGQGSPSPVGDLGFARMTEAIALERVSWHSVGADCLVEGY 383
Query: 356 GK 357
K
Sbjct: 384 LK 385
>gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1]
Length = 363
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 170/353 (48%), Gaps = 9/353 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL ++ G T+ NP+V ++VKDG ++G G G PHAEV A+ +AG +A
Sbjct: 4 QEYMKLALSLAKAGKGQTAPNPAVGAVVVKDGEIVGMGAHLKAGDPHAEVHAIRQAGSKA 63
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GA YVTLEPC+H G++PPCA I+E ++RV + DP+ V+G+G+ L + GI V
Sbjct: 64 EGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGIEVV 123
Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + + L+ + K ++TLK AV+ D S IT S+ VH
Sbjct: 124 TGICEKEALELNAHFFHFIQTKTPYVTLKSAVTLDGKTAAYTGDSKWITSEESRLDVHKY 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R DAILVG+ TV+ D+P L +P+R++LD H ++ L+S I+ +I
Sbjct: 184 RHHHDAILVGVNTVINDNP-LLTTRLPRGGKNPIRVVLDSHLRIPLESDILNIEHAKTII 242
Query: 247 IVTENDDPVL--ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
L + + + +K +L L VTSL VEGG+A+ SF+
Sbjct: 243 FCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQRLGELNVTSLFVEGGSAIHFSFLK 302
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ +++Y + ++G + + G D+ +
Sbjct: 303 EKAYQEVVIYMAPKLVGGSEAFTSFGGHGFPSIAEGDELEFSSIEKIGKDIKI 355
>gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
Length = 373
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 114/365 (31%), Positives = 170/365 (46%), Gaps = 12/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D ++M+ A+ ++ TS NP+V C++VKDG ++G+G G HAEV AL
Sbjct: 1 MSFTALDYQYMALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+A E+A GATAYVTLEPCSH GR+ PCA ++ G+ +V+ + DP+ VSGRGL L
Sbjct: 61 AQAKEQALGATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILE 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI + L+ R + K+A S D +A S ITG ++
Sbjct: 121 KAGIQTAHGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ QV RAQS A+L G TVL D+ ++ R + L L ++ +DSK T
Sbjct: 181 RAQVQDYRAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLT 240
Query: 240 ALLA-------PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
LA +I+ T+ D F + DL + + +L RG+ + +
Sbjct: 241 PDLAFFQIESPVIILTTKLDISERWPHFVSHLLVPELNGQVDLSQAMQLLGARGINHIWL 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
E G +A LVD I Y + +IG G LE G
Sbjct: 301 EAGHTLAGQMAQQGLVDQFIFYLAPKLIGHSGKSLLQLPVLESMAEVTELSIDDVSMVGV 360
Query: 349 DVCLE 353
D+ +
Sbjct: 361 DLKIT 365
>gi|197119395|ref|YP_002139822.1| bifunctional
2,
5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase/5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter bemidjiensis Bem]
gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone
deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil
reductase [Geobacter bemidjiensis Bem]
Length = 369
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 11/369 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ + M AL +R +G T+ NP+V C+IV++G V+G G G PHAEV AL+
Sbjct: 1 MADLHLKMMRLALAEARKGIGKTAPNPAVGCVIVRNGEVVGTGWHKKAGTPHAEVHALKA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG+Q L
Sbjct: 61 AGDKAAGADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ ++ E + ++ K ++ LK A++ D A S +T ++
Sbjct: 121 GIAVEVGLLKEESRELNLPFIKWIQTKLPYVVLKSALTLDGKSATASGDSKWVTSDRARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LR + DAI+VG+GTV+ DDP LTCR+ G P+R+I+D ++ L + I+
Sbjct: 181 EVHRLRGRLDAIMVGVGTVVKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAILGVKS 238
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A +I T + D A + DL L L RGV S+L+EGG+
Sbjct: 239 KAETVIATCSCDHAKMEALKAHGVEILTCCESDGRVDLADLFEKLGARGVQSVLLEGGSH 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353
+A + + + L+D +++ + ++G G+ EG VR G D+ +E
Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQVRVKRVGVDLLVE 358
Query: 354 YIGKNLCLQ 362
+ Q
Sbjct: 359 GVPVKTKSQ 367
>gi|257468833|ref|ZP_05632927.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
ulcerans ATCC 49185]
gi|317063083|ref|ZP_07927568.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium ulcerans ATCC 49185]
gi|313688759|gb|EFS25594.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium ulcerans ATCC 49185]
Length = 358
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 114/360 (31%), Positives = 193/360 (53%), Gaps = 11/360 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE
Sbjct: 1 MDKKYMERALELAALGEGNVNPNPMVGAVVVKDGKILGEGYHRKYGGPHAEVFALEEAGE 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ VSGRG++ ++ GI
Sbjct: 61 KAKGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIE 120
Query: 126 VDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ + + K ++ LK ++ D I S IT +++ +V
Sbjct: 121 VITGIMEKEALELNRVFMKYISTKTPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR + I+VGI TVLADDP LT R+ +P RI++DP + LDSK +
Sbjct: 181 RLRNKYMGIMVGINTVLADDPSLTARIEN--GRNPYRIVIDPFLDIPLDSKFVNFEDGKS 238
Query: 245 VIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+++ + N+ + + L + N+ + + +L + G+ ++L+EGG+ +
Sbjct: 239 ILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGETGIDAVLLEGGSFLISR 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ +D ++ + ++G+G ++ E V+ + +G++V +E+
Sbjct: 299 AFAEKAIDGGEIFIAPKILGDGEAVPFIKGFTCENISDGFQLENVKINNYGNNVSMEFYR 358
>gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555]
gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016]
gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555]
gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 369
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 124/370 (33%), Positives = 189/370 (51%), Gaps = 13/370 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M AL + G + NP V L+VK+G ++GRG + G PHAEV AL
Sbjct: 1 MNYDNKDEHYMEIALELASKGEGFVNPNPQVGALVVKEGNIVGRGYHKFYGGPHAEVYAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+EAG++A G YVTLEPCSHYG++PPC + I+ GI++VVV + DP+ VSGRG+++L
Sbjct: 61 KEAGDKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLR 120
Query: 121 QKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
KGI V + + ++ +K + LK AV+ D I S IT S
Sbjct: 121 NKGIEVVTGVLEKEALNINEIFIKYISDKLPFVILKSAVTLDGKIATVTGQSKWITCEES 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+N VH +R + AI VGIGT+L+D+P LT RL + SP+ ++LD ++ LD KI T
Sbjct: 181 RNFVHHIRNRVMAIAVGIGTILSDNPLLTTRLEKKCK-SPIAVVLDSKLRIPLDCKIFDT 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKN------INIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+II +K +LK L+ L G+ SL +E
Sbjct: 240 LKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLKILIEKLGNIGIDSLFIE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GS 348
GG ++ S ++S +VD +I + + +IG + +E +E V+ G
Sbjct: 300 GGGSLNFSALSSGIVDKVIYFIAPKIIGGLEAKTSVEGKGIEDLNKAVKLKNISYLKSGE 359
Query: 349 DVCLEYIGKN 358
D+ ++ +
Sbjct: 360 DMMIQGYVEK 369
>gi|26522745|dbj|BAC44849.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium
phosphoreum]
Length = 388
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 112/372 (30%), Positives = 176/372 (47%), Gaps = 16/372 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D + MS A+ ++ T+ NP+V C+IV DG ++G G G PHAEV AL +
Sbjct: 1 MTHTDQQMMSRAIALAKHGCYTTAPNPNVGCVIVNDGDIVGEGYHYQAGQPHAEVFALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A + A+GAT YVTLEPCSHYGR+PPCA+ +I + RVV + DP+ V+GRG+ L
Sbjct: 61 AQQRAQGATVYVTLEPCSHYGRTPPCAEALINAKVARVVCAMVDPNPAVAGRGIALLRAA 120
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + + L+ +Q+ + ++ LK+A S D +A S ITG ++
Sbjct: 121 GIEVDVGVLASQAQALNPGFIKQMSHQMPYVELKLAASLDGRTALANGVSKWITGPKARA 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
V RAQ+ AIL TV+ADDP L R P+R+I+D +L
Sbjct: 181 DVQHFRAQAGAILSTSATVIADDPSLNVRWSELEESVQQAYPQSALRQPIRVIIDSQNRL 240
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + ++ + + + + DL L++ L G+ +
Sbjct: 241 TPEYQLFHLPGETILARTEIGTEAWPDSVQQWQIPTQTDSHQLDLVVLMSRLANYGINHI 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYF 346
VE GA +A + + +LVDS+ILY++ ++G + L
Sbjct: 301 WVEAGARLAGALLQQQLVDSLILYQAPKLMGSDSRGLIDITGLTAMSQTPLLTITDVGMI 360
Query: 347 GSDVCLEYIGKN 358
D+ + N
Sbjct: 361 DCDIRIIATVHN 372
>gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 367
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10]
Length = 369
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 123/359 (34%), Positives = 182/359 (50%), Gaps = 10/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG +
Sbjct: 9 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 68
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V
Sbjct: 69 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 128
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + L+ ++ R +TLK A + D I S I+ S+ VH
Sbjct: 129 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 188
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TV+AD+P LT RL P+RII+D ++ LDS ++ L
Sbjct: 189 LRHRHQGIMVGVSTVIADNPSLTTRLGVEGL-HPVRIIVDSSLRIPLDSHVVSDGLAPTW 247
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAHSF 302
I+ TE D + + C L L +G+ S+L+EGG + S
Sbjct: 248 ILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALLQLGQKGIASILLEGGGTLNGSM 307
Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +LVD +I + + +IG P S E+ + + + G ++ + I
Sbjct: 308 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 366
>gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA]
Length = 369
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 110/365 (30%), Positives = 189/365 (51%), Gaps = 13/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EAG
Sbjct: 4 TVDEKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + GI
Sbjct: 64 EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + E E K +L K ++ LK ++ D I S IT +++ +V
Sbjct: 124 KVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNELAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + +DSK +
Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243
Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I+ + ++ V + + ++ +L L + S+L+EGG+
Sbjct: 244 NDNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMEDILKELGKLNIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + ++D+ ++ + +IG+ + + + +G ++
Sbjct: 304 GLISTAFKENVIDAGEIFIAPKIIGDNSSIPFISGFNFNSMEEVFKLSNPKFNIYGDNIS 363
Query: 352 LEYIG 356
+E+
Sbjct: 364 IEFEN 368
>gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912]
Length = 371
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 188/364 (51%), Gaps = 12/364 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V +IVKDG ++G+G G PHAEV AL AGE+
Sbjct: 3 DEDWMRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPC H+GR+PPC++ +IE G+ RVVV + DP+ V+G G++ L Q G+ V
Sbjct: 63 ARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ +E + + ++ R R + KIA++ D I S ITG ++ +VH
Sbjct: 123 EVGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR++ DA++ G+GTV+ADDP LT R G P+R++LD ++ D++I+ T
Sbjct: 183 LRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPT 242
Query: 245 VIIVTENDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
V+ P I+ DL+++ L GV + LVE G +
Sbjct: 243 VVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRL 302
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
S S LVD ++ + + ++ GIP+ +E + G D+ +
Sbjct: 303 QGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEGVERLAQSAQLEITGVETVGEDLKVTA 362
Query: 355 IGKN 358
+ +
Sbjct: 363 LVRR 366
>gi|319408448|emb|CBI82103.1| Riboflavin biosynthesis protein ribD [Bartonella schoenbuchensis
R1]
Length = 375
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 153/375 (40%), Positives = 216/375 (57%), Gaps = 12/375 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
M + D RFM+AA+R ++ H+GLT NPSV LIV+D ++G GVTA G PHAE
Sbjct: 2 MNKEAQDNRFMAAAIRLAQRHIGLTGQNPSVGALIVRDDDGKASIVGYGVTAIHGRPHAE 61
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
VQAL AG + GATAYVTLEPCSHYG + PC +I+ GI RVV+ + DPD RV GRG+
Sbjct: 62 VQALLMAGPLSHGATAYVTLEPCSHYGETSPCVNALIDSGISRVVIALTDPDKRVCGRGI 121
Query: 117 QWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + + AYL + +R +TLK+A+S DN IG+ G V I+
Sbjct: 122 ALLRAAGIEVVEGVLAREAFETLSAYLCIKKLQRCEVTLKMAISADNGIGIKKKGRVEIS 181
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G + H+LRAQ+DAI+VGIGT+LAD+P+L+CRL GL+ SP+RIILD + ++ D+K
Sbjct: 182 GAQAHTYTHILRAQNDAIMVGIGTILADNPQLSCRLPGLEMRSPVRIILDANLRIPFDAK 241
Query: 236 IIKTALLAPVIIVTENDDPVLAL------AFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+I+TA P ++ + + +L +L RG+ S
Sbjct: 242 VIQTATKIPTWVICNATFAEKSKKIALEQCGVCIFPIEMSAHLMQPFAILQLLCQRGINS 301
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+N+ VD +I + + +++G I +P YL F + G+D
Sbjct: 302 ILLEGGAKTGEIFLNAGCVDQLICFHAPVILGADRIDAPHFATYLS-EFNEIETKMLGND 360
Query: 350 VCLEYIGKNLCLQEL 364
++ K LCLQ L
Sbjct: 361 RLCKWRRKTLCLQGL 375
>gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2]
gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1]
Length = 366
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E
Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + +
Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V ++E E + + + ++ +K A++ D I S I+G ++ QVH
Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + AI+VG+ TV+ DDP LTCR +P+RI+ D + + SKIIKTA
Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCR--LENGENPIRIVCDTDLRTPITSKIIKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I T + D +RK IIY + DL L+ L + SLL+EGG+A+ S
Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G SP+ + G+D +E
Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGSA-KSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359
Query: 357 KNLCLQE 363
CLQE
Sbjct: 360 IYPCLQE 366
>gi|224370210|ref|YP_002604374.1| RibD [Desulfobacterium autotrophicum HRM2]
gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2]
Length = 381
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 117/371 (31%), Positives = 181/371 (48%), Gaps = 13/371 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + FM A+ + G T+ NP V ++VK+ V+G+G G HAEV A+
Sbjct: 11 MMDETTHNSFMEQAICLAEQGRGYTAPNPMVGAVVVKNNQVVGQGWHKGPGLAHAEVNAI 70
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++AG+ ARG+ YVTLEPC+H GR+PPC + I+ GIRRV V +DP+ V+G G+++L
Sbjct: 71 DDAGDLARGSDLYVTLEPCNHTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLK 130
Query: 121 QKG--IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
++G + V + + + +K+ + LK A + D + S IT
Sbjct: 131 ERGVAVKVGICRRASETLIEDFIWYVKNDKQPFVVLKCAATLDGQLATRTGDSKWITNEA 190
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH LR DAI+VG GT+ AD+P LT R+ P+R+ILD + DS++
Sbjct: 191 SRKYVHRLRHWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVILDAQLSIDPDSQVFT 250
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
A ++ A K DL L L RGV SLL+E
Sbjct: 251 QQSSAKTMVAISRRADPERCALFKHRGIELLVLPEKEGIIDLACLGEALGQRGVVSLLIE 310
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEG----YLEKNFMCVRRDYFGS 348
GG V HS + + +V+ I L+ + ++G G+P G V + F +
Sbjct: 311 GGGRVVHSALAAGVVNKIYLFFAPKLLGGNDGVPMCRGRGPELMNDALGLSQVEVERFDN 370
Query: 349 DVCLE-YIGKN 358
D+ ++ Y+ +N
Sbjct: 371 DILIKGYLKQN 381
>gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 361
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 118/356 (33%), Positives = 171/356 (48%), Gaps = 9/356 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGS 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI
Sbjct: 61 HAKGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +L ++TLK A S D + S IT ++
Sbjct: 121 VKEGILADQAEKLNEKFLHFMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R +ILVG+GTV+AD+P LTCR P+R+ILD + D+++I
Sbjct: 181 QYRKTHQSILVGVGTVIADNPSLTCR-LPDVTKQPVRVILDTALSIPEDTQVICDQAAPT 239
Query: 245 VIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T D L+ NI + + + +L IL GV S+ VEGG+AV SF
Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAEEGVMSVYVEGGSAVHGSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ II Y + +IG PS + + G D+ L
Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHSPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLT 355
>gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622]
Length = 387
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 121/363 (33%), Positives = 179/363 (49%), Gaps = 11/363 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL + +G TS NP V ++VK G +I RG G HAEV ALE AG A
Sbjct: 29 EFFMRIALEEAAKGLGRTSPNPVVGAVLVKGGRIIARGYHKKAGSAHAEVVALEAAGARA 88
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+GA Y TLEPC HYGR+PPC+ IIE G+RRV+ DP+ +VSG+G+ + + G+ V
Sbjct: 89 KGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMRRAGLKVL 148
Query: 128 RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ +E L+ + + +TLK AV+ D + A S +TG ++ VH L
Sbjct: 149 TGVLAEDADRLNRPFFKMIRTGLPWVTLKAAVTLDGKLATATGDSRWVTGAPARAWVHRL 208
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R D ILVG TV DDP+LT RL G P+R+++D H +LS I A +
Sbjct: 209 RDSVDVILVGANTVRKDDPKLTTRLPGGGGKDPLRVVVDSHLRLSPGYTIFTQRSAARTV 268
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVEGGAAVAHS 301
+ T D ++ ++ + R G ++VEGGA + S
Sbjct: 269 VATLEDPEGRKARRFLAQGVDVWQLREKAGQVDLKALLRRLAKGGHNHVMVEGGAEMYGS 328
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
F+ RL DS+ L+ + +IG G+ + +++ + D+ E G ++ L
Sbjct: 329 FLRGRLADSLALFLAPKLIGSPGLSW-AGDLGVKEMAQALAVK----DLAFERHGDDILL 383
Query: 362 QEL 364
Q L
Sbjct: 384 QAL 386
>gi|218710376|ref|YP_002417997.1| riboflavin biosynthesis protein RibD [Vibrio splendidus LGP32]
gi|218323395|emb|CAV19572.1| Riboflavin biosynthesis protein ribD [Vibrio splendidus LGP32]
Length = 374
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 106/361 (29%), Positives = 178/361 (49%), Gaps = 10/361 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58
M + D + MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G HAEV
Sbjct: 1 MSNFTPLDFQMMSRAIKLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEAHAEVH 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ AG++A+GA AYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++
Sbjct: 61 AMRMAGDKAKGAIAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKM 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L I V+ + + + L+ ++++ + LK+A S D + S IT
Sbjct: 121 LRDACIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ V RA+S A+L TV+ D+ L R L + + + +
Sbjct: 181 EARRDVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKE-HYAEDELRQPIRVILD 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGG 295
+ L P + + + VL +A +I + D DL L+ L + + VE G
Sbjct: 240 RQNQLYPELKLFQTPTSVLRVAETSADIEVETTDAGQLDLHDLMRQLPANHIDHIWVEAG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A +A S I ++LVD +ILY + ++G G L + G D+
Sbjct: 300 ATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIR 359
Query: 352 L 352
+
Sbjct: 360 I 360
>gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
Eklund 17B]
gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str.
Eklund 17B]
Length = 378
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 112/367 (30%), Positives = 181/367 (49%), Gaps = 13/367 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
VS + +M AL ++ +G + NP V +IVKD +IG G Y G HAEV A+
Sbjct: 12 KVSLVNEEYMDLALELAKKGIGKVNPNPLVGAVIVKDNEIIGTGYHEYYGGAHAEVDAIN 71
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ G+T Y+TLEPC+HYG++PPC IIE I++VV+ + DP+ VSG+ ++ L +
Sbjct: 72 NTTKSLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKE 131
Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V + E + K +++ + LK A+S D I + S IT ++
Sbjct: 132 NDIEVIVGVEEEKCKKLNESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSKEAR 191
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
HLLR + AI+VG+ T++ D+PELTCR+ +P+RI++D ++ L SK+IK
Sbjct: 192 IDGHLLRNKLSAIMVGVNTIIKDNPELTCRIEN--GRNPIRIVVDSTLRIPLSSKVIKNY 249
Query: 241 LLAPVIIVTENDDPVLALA----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I T+ D + I DLK+L+ L + S+L+EGG
Sbjct: 250 DGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMRYLGTLKIDSILIEGGG 309
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ S + +VD + Y + ++G S + K + + ++
Sbjct: 310 TLNFSALEENIVDKVRFYIAPKILGGETSKSSIGGQGFSKLSDAVKLKDLTYEKLSEEIV 369
Query: 352 LE-YIGK 357
+E YI K
Sbjct: 370 IEGYINK 376
>gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 367
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 370
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 175/353 (49%), Gaps = 6/353 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D ++M L +R S NP V+C+IV+ V+G GV G PHAEV AL++AG
Sbjct: 4 DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGDRVVGEGVHPGAGQPHAEVLALQQAGSL 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L + GI V
Sbjct: 64 ARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGIDV 123
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ L+ + V ++ LK A++ D A S I+ ++ VH
Sbjct: 124 TVGVLERECQELNEGFAFAIVRQQCFGLLKYAMTLDGKSAAATGHSRWISNSPARQWVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA DA++VG TV D+P LTCRL LQ P+R++L L + + + +
Sbjct: 184 QRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRVVLSRSLNLPPVAHLWQVEEAPTL 243
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+I L + K+ + +++ + +L RG S L E G +A + +
Sbjct: 244 VITEAVATHPLWGSLAKQGVELLHLPQVTPSRAAQVLFQRGCLSALWECGGTLAWAALKD 303
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVR--RDYFGSDVCLE 353
+ + + + ++G P+P+ + +++ V + G + +
Sbjct: 304 GAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVNQSWQLVEPRLETLGDNWLII 356
>gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5]
Length = 366
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 184/359 (51%), Gaps = 10/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG +
Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V
Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 125
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + L+ ++ R +TLK A + D I S I+ S+ VH
Sbjct: 126 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + I+VG+ TV+AD+P LT RL P+RII+D ++ LDS ++ L
Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRLGVKGL-HPVRIIVDSSLRIPLDSHVVLDGLAPTW 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAHSF 302
I+ TE D + + +I C L L +G+ S+L+EGG + S
Sbjct: 245 ILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALLQLGQKGIASILLEGGGTLNGSM 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +LVD +I + + +IG P S E+ + + + G ++ + I
Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 363
>gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1]
Length = 373
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 121/371 (32%), Positives = 168/371 (45%), Gaps = 22/371 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---E 62
+M AL ++ +G TS NP V +IV+DG +IG G G HAE A E
Sbjct: 2 QHEDYMRRALELAQRGMGFTSPNPMVGAVIVRDGKIIGEGWHKKYGELHAERTAFAYCDE 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G + GA YVTLEPC H+G+ PPC +IE GI+RV + DP+ VSG+G++ L +
Sbjct: 62 NGIDCTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREH 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E + +T+K A++ D I S ITG ++
Sbjct: 122 GIEVTEDVLREECDAINGIFFHWITHNWPFVTVKYAMTLDGKIATHTGESKWITGEEARL 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V R + AI+VGIGTVLADDP LTCR P+RII D ++ LDS I+KTA
Sbjct: 182 DVQRERLRHSAIMVGIGTVLADDPMLTCR--LENGRDPIRIICDSRLRIPLDSNIVKTAK 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNIN-----------IIYCDCRDLKKLLTILVGRGVTSL 290
P II N + +K C DL L+ L + S+
Sbjct: 240 DVPTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHVDLYTLMLKLREMKIDSI 299
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDY 345
LVEGG + S +LV + Y + + G SP+E + +
Sbjct: 300 LVEGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWGIPTPNDAYMIENTQIRR 359
Query: 346 FGSDVCLEYIG 356
G D+ +E
Sbjct: 360 IGEDILIEGRV 370
>gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9312]
gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9312]
Length = 364
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 100/354 (28%), Positives = 172/354 (48%), Gaps = 9/354 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ + G TS NP V +I+ K+G +I G G PHAEV A +
Sbjct: 8 HIKWMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKK 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
E + YV LEPC H+G++PPC +I GI+++ + + DPD RVSG+G++ L Q GI
Sbjct: 68 EVKDGYMYVNLEPCCHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIK 127
Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ ++ R + ++S LK A+S D IG+ S IT S++ VH
Sbjct: 128 VHLGLCKKESLELNKAFIYRTITEKSFGVLKWAMSIDGRIGLKNGKSKWITNKDSRSLVH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R + DAI++G T+ D+P LT R E P+R++ L S +
Sbjct: 188 SFRTEFDAIIIGGNTLRQDNPLLTTRGLKNPE--PLRVVFTKTLDLPPKSNLWDCDEAKT 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++I + L + + + + + + +L RG +L E G +A S +
Sbjct: 246 LVIYDSSTANEKFLTNIPQCVEVEKVSSDNPELISKLLAKRGCNKVLWECGPKLATSAVK 305
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353
S ++ II + + ++G +PL + E+ ++ G+D+C++
Sbjct: 306 SDCINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKLSDSQVSLIGNDICVK 359
>gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophus aciditrophicus SB]
gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophus aciditrophicus SB]
Length = 380
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 181/364 (49%), Gaps = 16/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ +R G S NP V +IVK+ +IG G G HAE+ AL A E
Sbjct: 3 DEFYMKRALQLARKGEGWVSPNPMVGSVIVKNDRIIGEGYHRKFGEAHAEINALNGAKES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YV+LEPCSHYG++PPC + ++ C +RVV+ DP+ V+GRG+ L + GI V
Sbjct: 63 AEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + ++L + +TLK A + D I + S I+ S+ H
Sbjct: 123 TVGVLEEVCREINESFLKFIQFRIPFVTLKYAQTLDGRIATSTGHSRWISSPPSRRFAHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR DAILVGIGTVL+DDPELT R ++ +P+RI+LD ++ L ++I++ A
Sbjct: 183 LRHAHDAILVGIGTVLSDDPELTVR--LVRGKNPLRIVLDSRLRIPLTARILQEQDQAKT 240
Query: 246 IIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++VT + L+ DL +LL L RG+ S+LVEGG+ +
Sbjct: 241 LMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRLLRELGSRGIASVLVEGGSGIL 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL--E 353
+ + L D +I + + G GI + + + + G D+ +
Sbjct: 301 TALMAQDLADRLIAIIAPKISG-RGIEAVGQLNITSMGKAIGLVFRKIYRKGDDLIIDSR 359
Query: 354 YIGK 357
+
Sbjct: 360 FRRP 363
>gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1]
Length = 376
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 16/365 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE
Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI
Sbjct: 68 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + +L R + K+A+S D MA S ITG +++ V
Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234
LRA+S +L +VLAD+ +T R L +P+R+++D +LSL S
Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLSLAS 247
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +++ DDP A A + DL LL L RGV +L+E
Sbjct: 248 PFFQAGPA--LVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARGVNEILLEA 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
GA + +F LVD L+ + +G P P+++ G D
Sbjct: 306 GAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGDDWR 365
Query: 352 LEYIG 356
+ I
Sbjct: 366 VTAIP 370
>gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 367
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLERLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 4_1_13]
gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 4_1_13]
Length = 369
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 187/364 (51%), Gaps = 13/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EA E
Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAEE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124
Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V ++E E K + + ++ LK ++ D I S IT I++ +V
Sbjct: 125 VKLGVLEKEAKEINKIFFKYIENRIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
LR + AI+VGI T+L D+P L R G+++ +P R+++DP+ + +++K +
Sbjct: 185 FLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAA 297
+II + ++ + + K + K+ IL G + S+L+EGG+
Sbjct: 245 DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGSG 304
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+ + ++D+ ++ + +IG+ + + + + +G ++ +
Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDSSAVPFINGFNFDSMEDVFKLSNPKFNIYGDNISI 364
Query: 353 EYIG 356
E+
Sbjct: 365 EFEN 368
>gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 358
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 125/356 (35%), Positives = 186/356 (52%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI+RVVV DP+ VSGRG+Q L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG+ TV D+P LT R+ +P+R+ILD ++ +++ ++ I T
Sbjct: 181 NAAILVGVNTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N A K +L ++L +L +G++SLL+EGG V SFI ++
Sbjct: 239 NNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGISSLLIEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 354
>gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
HEL-45]
gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex
HEL-45]
Length = 370
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 131/361 (36%), Positives = 179/361 (49%), Gaps = 11/361 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DARFM+ AL R G NP+V C+IV+ +IGRG T GG PHAE QAL +AGE
Sbjct: 8 DARFMALALSLGRRGQGNVWPNPAVGCVIVQGTRIIGRGWTHPGGRPHAEPQALAQAGEA 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+G++PPCAQ +I G+ RVV+ D D RV+GRG+ L GI V
Sbjct: 68 ARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAAGIDV 127
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
HA + + R +TLK+A S D I S IT ++ H
Sbjct: 128 SVGEREAEARADHAGFFCRTDLGRPMLTLKLANSFDGRIATGTGESQWITDAPARRLTHA 187
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+RA+ DA++VG GT DDP LT R + H P R+++ L L ++ +TA P+
Sbjct: 188 MRARHDAVMVGAGTARKDDPSLTVR-DLGVAHQPARVVVSRRLDLPLMGQLARTAADIPL 246
Query: 246 IIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
I+ D + D +L L G G+T + EGG+A+A
Sbjct: 247 ILCHGTDADPALVRTWSDLGATLLLCAARGAQLDPTDVLRQLAGHGLTRIFCEGGSALAA 306
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
S I + LVD ++ + + +VIG G+P L F G D+ +
Sbjct: 307 SLIEADLVDRLVGFTAGLVIGAEGLPGIGALGLSRLAEAPRFALQSSQRIGPDLLHVWRR 366
Query: 357 K 357
Sbjct: 367 N 367
>gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
TAC125]
Length = 382
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 115/369 (31%), Positives = 179/369 (48%), Gaps = 12/369 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ +D +M+ A+ ++ T+ NP+V C++VK+ ++G G G HAEV AL
Sbjct: 7 FNQYDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNALAM 66
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS
Sbjct: 67 AGSKAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDA 126
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E++ + + R ++T K+A S D + S ITG ++
Sbjct: 127 GIEVAYGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQ 186
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V L RAQS AIL G TVL DD +L R N L + P ++ L ++ +DS+ T
Sbjct: 187 DVQLYRAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPN 246
Query: 242 LA-------PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
LA +I T+ D F K + DL +L L ++ +E
Sbjct: 247 LALFAIESEIIIFTTKVDKSQHWPHFVKHIVVTASNSKVDLTAVLKKLAKLQFNTVWLEA 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
GA +A + L+D I Y + +IG G L + G D+
Sbjct: 307 GATLAGKMVELDLIDEFIFYLAPKLIGCDGKSLVNFPELISMQNTIDLTFNECTRIGDDL 366
Query: 351 CLEYIGKNL 359
+ + +L
Sbjct: 367 RISAVKSSL 375
>gi|303241094|ref|ZP_07327603.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
CD2]
gi|302591354|gb|EFL61093.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus
CD2]
Length = 362
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 180/356 (50%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
MS A+ ++ G T+ NP V +IVKD +I G G HAEV A + A E+ G
Sbjct: 1 MSRAIELAKKGWGRTNPNPLVGAVIVKDERIIAEGFHEVIGGAHAEVSAFKNAVEDVAGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YV LEPCSHYGR+PPCA+ IIE I++VVV + DP+ +VSGRG+Q L GI V+ +
Sbjct: 61 TLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEVGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K ++ V K+ + LK A++ D I S +T S+ VH++R +
Sbjct: 121 LEDEAKKLNEIFINYVVNKKPFVILKTAMTIDGKIASVSGDSKWVTSEASRGYVHIIRDR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI--- 246
+I+VGI T++ D+P LT RLN P+RI++D + DS+++ + A V+
Sbjct: 181 VASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVDSKGIIPEDSRVLNSDSKAVVVLAT 240
Query: 247 --IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + L K DL KL L + S+L+EGG + + +
Sbjct: 241 TSNILKEKEMYLIDKGVKIIKADGADGRVDLVKLTEELYKLEIDSILLEGGGNLNAAALE 300
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
+ +VD + + + ++G +P+E + V +G D+ +E
Sbjct: 301 AGIVDKAMFFIAPKILGGKEAVTPVEGRGINLMSDAVKLKDVSVSRYGEDILVEGY 356
>gi|83955709|ref|ZP_00964289.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
gi|83840003|gb|EAP79179.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1]
Length = 367
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/364 (34%), Positives = 180/364 (49%), Gaps = 11/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG
Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI
Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDRDPRVSGKGIAILRAAGI 121
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
IVD + + H R E R +TLK+A S D I A S IT ++ V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLANSFDGRIATASGESQWITAPPARRVV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R++ DA++VG GT DDP LT R + P RI++ + L+ + +TA
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVR-DLGTTRQPTRIVVSNGLDIPLNGALARTANDI 240
Query: 244 PVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P+I+ P + + D +L L G+T + EGG +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD ++ + + + +G G+P+ L+ F G D+ +
Sbjct: 301 AATLLKADLVDQLVGFTAGLALGADGLPAIAPLQLQRLAQAPRFTLTETSRIGPDLLHIW 360
Query: 355 IGKN 358
N
Sbjct: 361 SRSN 364
>gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
Ice1]
gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum
Ice1]
Length = 374
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 133/373 (35%), Positives = 189/373 (50%), Gaps = 12/373 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D FM AL + +G TS NP V ++VKDG VIG G G PHAEV AL +
Sbjct: 1 MIPEDFSFMDRALELAALALGRTSPNPVVGAVVVKDGRVIGEGYHRKAGTPHAEVHALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A G T YVTLEPC+H+GR+PPC + II I RVV V DP+ +V+G+G L +
Sbjct: 61 AGEAACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREA 120
Query: 123 GIIVDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + ++ I ++ KR + LK A++ D I A S ++ S+
Sbjct: 121 GIEVDVGVMADAAITINQPFFTWVTRKRPWVLLKWAMTADGKIATASGDSRWVSSPASRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH R + DAILVGIGTVLADDP+LT RL +P+RII+D + L +K++
Sbjct: 181 KVHQWRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIRIIVDSKARTPLTAKVLSAEA 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAA 297
+ + +A + + L+ L+ R VTSLLVEGGA
Sbjct: 241 KTIIAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLSYLLHRLACDNVTSLLVEGGAR 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL 352
+ +F++ L D ++ + ++G G PSP+ R G D L
Sbjct: 301 IHGAFLDGNLADRAAIFLAPKIVGGEGAPSPVGGTGAALMAKARRLQRCVMTSVGDDWLL 360
Query: 353 EYIGKNL--CLQE 363
E + + + CL E
Sbjct: 361 EGVLQEVRPCLPE 373
>gi|83941150|ref|ZP_00953612.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
gi|83846970|gb|EAP84845.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36]
Length = 367
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/364 (34%), Positives = 178/364 (48%), Gaps = 11/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG
Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI
Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDSDTRVSGKGIAILRAAGI 121
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
IVD + + H R E R +TLK+A S D I A S IT ++ V
Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLASSFDGRIATASGESQWITAPPARRVV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R++ DA++VG GT DDP LT R + P RI++ + L+ + +TA
Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVR-DLGTTRQPTRIVVSNGLDIPLNGTLARTANDI 240
Query: 244 PVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P+I+ P + + D +L L G+T + EGG +
Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + LVD ++ + + + +G G+P+ L F G D+ +
Sbjct: 301 AATLLKENLVDQLVGFTAGLALGADGLPAIAPLQLPRLAQAPRFTLTETSRIGPDLLHIW 360
Query: 355 IGKN 358
N
Sbjct: 361 HRSN 364
>gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
longum JDM301]
gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
longum JDM301]
Length = 366
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 178/368 (48%), Gaps = 13/368 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DAR+M A+ ++ G + NP V +IVKD +IG+G G HAE AL +
Sbjct: 2 DDARYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI
Sbjct: 62 SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
VD + E + + + ++ +K A++ D I S I+G S+ +VH
Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA
Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVR 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300
I T DD A +R+ I+ + ++ L + S+L+EGG+A+
Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + R+VD +Y + + G SP+ + G D +E
Sbjct: 300 SALEQRIVDEAHVYIAPKIFGGTA-KSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358
Query: 356 GKNLCLQE 363
C +E
Sbjct: 359 VVYSCSRE 366
>gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264]
Length = 367
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 184/359 (51%), Gaps = 11/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G HAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 ARGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDREAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T N A K +L ++L +L +GV+SLL+EGG V SF
Sbjct: 242 IFTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
I ++L+D IILY + +IG PS +E + K F + G D
Sbjct: 302 IENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP 360
>gi|294788324|ref|ZP_06753567.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
29453]
gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
29453]
Length = 363
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 7/358 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 5 FSDLDHAHMHRALELAWQGRFSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQ 64
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPC+HYGR+PPCA+ + E G+ RVV + DP+ V+G+GL L+
Sbjct: 65 AGSLAQGATAYVTLEPCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAA 124
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G++V+ +E + + +L+R KR I+LK+A S D ++ S ITG ++++
Sbjct: 125 GVLVECGLLEHKARELNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARS 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQS AIL GIGT+LAD+P+L R P+R+ILD +F+L S++++
Sbjct: 185 DVQQLRAQSCAILTGIGTILADNPQLNVRQFN-TLRQPIRVILDSYFRLPEKSQVVQDDG 243
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ +T+ V + +L + IL GV +L+E G +A +
Sbjct: 244 ETWLFTLTDTPSWVAKYENLRVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQTLATA 303
Query: 302 FINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
F+ + LVD I+ ++S ++G P ++ + G D+
Sbjct: 304 FLQADLVDEIVYFQSPKILGNTARGIFKLPENPTVLTKSPDWRTISVTSIGDDIKWVL 361
>gi|209884995|ref|YP_002288852.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
OM5]
gi|209873191|gb|ACI92987.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans
OM5]
Length = 380
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 152/362 (41%), Positives = 201/362 (55%), Gaps = 12/362 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE QAL+ AGE
Sbjct: 15 DHRFMQLALALGRRGQGATWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPQALQRAGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSHYG+SPPC II GI RVV ++DP+ +V+G+G L GI V
Sbjct: 75 ARGATLYVTLEPCSHYGKSPPCVDAIIVSGIARVVSAIEDPNPQVAGQGHVRLRDAGITV 134
Query: 127 DRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + + H+ R E R H+TLK+AVS D I AG V ITG + +VHL
Sbjct: 135 DVGLCRDEAAQAHSGHFLRVREGRPHVTLKLAVSADGKIAAAGGKPVRITGEAANARVHL 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+SDAIL+GIGT LADDP LTCRL G++ SP+R++LD +L S+++ +A P+
Sbjct: 195 LRAESDAILIGIGTALADDPLLTCRLPGMEHRSPVRVVLDRALRLPGASRLVHSARQTPL 254
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL-------KKLLTILVGRGVTSLLVEGGAAV 298
I+ A A ++ + +L L + +T LLVEGGA V
Sbjct: 255 WIIAAETAEAAAAARLGVAGAHLFRLPVEDRAAGLDLNAVLRTLSEQDITRLLVEGGAKV 314
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
A SF+ +RLVD L + IG+ G+P+ L+ + G D
Sbjct: 315 ASSFLAARLVDEFWLLQGAKSIGDDGLPALEGQDLDAVTASSGWRIDATQMLGDDRLTIS 374
Query: 355 IG 356
Sbjct: 375 RR 376
>gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
gi|158449142|gb|EDP26137.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759]
Length = 382
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 122/381 (32%), Positives = 175/381 (45%), Gaps = 25/381 (6%)
Query: 1 MPVSSFDARF----MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
M + D F M A+ ++ G + NP V +IVK G +IG G G HAE
Sbjct: 1 MIDNHIDDEFNLAYMRRAIELAKKGTGAVNPNPLVGAVIVKAGRIIGEGYHVRYGELHAE 60
Query: 57 VQALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
A + EA GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+
Sbjct: 61 RAAFASLADPAEAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVP 173
G + L GI V + L+ + + K+ ++T+K A++ D I S
Sbjct: 121 GFRRLRDAGIEVYTHCLKDECDALNDIFFKYIIAKKPYVTMKYAMTMDGRIATHIGASKW 180
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR------LNGLQEHSPMRIILDPH 227
ITG S+ V LR + I+ GIGTVLADDP LTCR + +P+RII D
Sbjct: 181 ITGEASRAYVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDTDNVRNPIRIICDSK 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTEND-------DPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ DS I++TA+ I+ T D L DL +L+
Sbjct: 241 LRIPEDSNIVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIETDSTDGNVDLGQLMD 300
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----E 335
IL G+G+ +L+EGG + +S ++ LVD ++ + + G G SP+ +
Sbjct: 301 ILGGKGIDGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADA 360
Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
F F DV L Y
Sbjct: 361 HMFRLEEVRRFDEDVMLRYKK 381
>gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
2522]
gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM
2522]
Length = 362
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 124/359 (34%), Positives = 182/359 (50%), Gaps = 9/359 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M A+ ++ G T+ NP V +IV + ++G G G HAE A+E A +
Sbjct: 1 MDNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNNQIVGFGAHLKAGEHHAEKHAIEMAKD 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GAT YVTLEPCSHYGR+PPCA +IE GI++V++ DP+ +VSGRG++ L GI
Sbjct: 61 KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120
Query: 126 VDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ E L+ K+ +TLK A S D I S IT S+ VH
Sbjct: 121 VEVGCMKEETDKLNDVFFHFVNTKKPFVTLKSATSLDGKIATRTGESQWITSEESRKDVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR ++DAILVGI TV+ DDP LT R +P+R+ILD ++ + +K+I
Sbjct: 181 QLRHKNDAILVGINTVIKDDPALTTR-LPDGGKNPIRVILDRELRIPMTAKLINDHASLT 239
Query: 245 VIIVTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+I T + L + + I+ D ++ LL +L +TSLLVEGG V SF
Sbjct: 240 WVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYLLGEHNITSLLVEGGGTVNDSF 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
+ S +I+Y + ++IG S +E K + G+D+ L
Sbjct: 300 LKSGEFQQVIVYIAPLLIGGEDALSSFSGSGIEKLADAKKLKVQSLEQIGNDIKLVLTK 358
>gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 358
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 127/356 (35%), Positives = 186/356 (52%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTGARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N +A K +L ++L +L +GV+SLLVEGG V SFI ++
Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F V G D +
Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRFIGYPE 354
>gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
3_1_53]
gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium
3_1_53]
Length = 366
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 182/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E
Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + +
Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V ++E E + + + ++ +K A++ D I S I+G ++ QVH
Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + AI+VG+ TV+ DDP LTCR +P+RI+ D + + SKIIKTA
Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCR--LENGENPIRIVCDTDLRTPITSKIIKTANDIKT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I T + D +RK IIY + DL L+ L + SLL+EGG A+ S
Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGNAMNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G SP+ + G+D +E
Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGSA-KSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359
Query: 357 KNLCLQE 363
CLQE
Sbjct: 360 IYPCLQE 366
>gi|238911451|ref|ZP_04655288.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 367
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583]
Length = 362
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 181/353 (51%), Gaps = 12/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL+ ++ G TS NP V +IVK+G +IG+G G HAE AL E +GA
Sbjct: 1 MKIALQLAKKGCGFTSPNPMVGAVIVKEGRIIGQGWHEKYGEAHAERNALAACTENPKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC HYG+ PPC I+E GI RVV+ DP+ VSG+G+Q L ++GI+V +
Sbjct: 61 TMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEHI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + + + KR + +K A++ D I S +TG ++ V R +
Sbjct: 121 LQEDCERLNEVFFHYIQTKRPFVVMKYAMTMDGKISTKTGASKWVTGETARRHVAQQRHR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+ GIGT+L DDP+LTCR+ G +P+RII D ++ L + ++ TA P II T
Sbjct: 181 YAAIMAGIGTILTDDPQLTCRIEG--GKNPIRIICDTTLRIPLSANVVSTAKQIPTIIAT 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINS 305
D + KK +++ + R+ +L+ +L + + S+L+EGG + + ++S
Sbjct: 239 CCRDAERCALYEKKGCHVLLVEERNGHVDLEQLMYLLGEKQIDSILLEGGGTLNWAALSS 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+V + Y + + G +P+E + G D +E
Sbjct: 299 GIVQKVQAYIAPKLFGGQAAKTPIEGEGICYPTAAFRLKNSCVLPLGEDFLIE 351
>gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
12B01]
gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
12B01]
Length = 364
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 105/351 (29%), Positives = 173/351 (49%), Gaps = 9/351 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+
Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI V+
Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEVEI 120
Query: 129 MMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + L+ ++++ + LK+A S D + S IT ++ V R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A+S A+L TV+ D+ L R L + + + + + L P +
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKD-HYAEDELRQPIRVILDRQNQLRPELK 239
Query: 248 VTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + VL A + DL L+ L + + VE GA +A S I +
Sbjct: 240 LFQTPTSVLRVAEASADIEVGTTEAGQLDLHDLMRQLPANHIDHIWVEAGATLAKSLIEA 299
Query: 306 RLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+LVD +ILY + ++G G L + G D+ +
Sbjct: 300 QLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350
>gi|322614696|gb|EFY11625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618802|gb|EFY15690.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623509|gb|EFY20348.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629193|gb|EFY25972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322631913|gb|EFY28667.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637350|gb|EFY34052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642035|gb|EFY38645.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647854|gb|EFY44329.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322652532|gb|EFY48886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653306|gb|EFY49639.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660545|gb|EFY56781.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322664697|gb|EFY60890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669250|gb|EFY65400.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322670795|gb|EFY66928.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322678966|gb|EFY75021.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681994|gb|EFY78019.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685177|gb|EFY81174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323194475|gb|EFZ79670.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323196988|gb|EFZ82130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203973|gb|EFZ88990.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206942|gb|EFZ91895.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210840|gb|EFZ95712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323214531|gb|EFZ99282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223088|gb|EGA07431.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227037|gb|EGA11218.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230145|gb|EGA14265.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323233883|gb|EGA17972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238423|gb|EGA22481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323244111|gb|EGA28120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246271|gb|EGA30254.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251897|gb|EGA35760.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257894|gb|EGA41573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323261093|gb|EGA44685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323264977|gb|EGA48476.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272540|gb|EGA55947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 367
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 372
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 14/363 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
+MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE
Sbjct: 10 YMSLAMELAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAKKNGES 69
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L G +
Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+++AI+VGIGTVL DDP L R+ G + +P +I++D ++ LD+K++ ++ +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYGNYK-NPTKILVDSKLRIPLDAKLLSSSDAPTI 248
Query: 246 IIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
I TE + + +A + DL L + L + S+L+EGG + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
S + LVD +I + +IG G+ EG + + G D+ +
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEGITLMKDAIKIKDFQVEKMGQDILINAYV 368
Query: 357 KNL 359
Sbjct: 369 DKE 371
>gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
Length = 367
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 YRIVQQPGE--TWIARTQEDSHAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 366
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 115/368 (31%), Positives = 178/368 (48%), Gaps = 13/368 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA++M A+ ++ G + NP V +IVKD +IG+G G HAE AL +
Sbjct: 2 DDAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI
Sbjct: 62 SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
VD + E + + + ++ +K A++ D I S I+G S+ +VH
Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA
Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVR 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300
I T DD A +R+ I+ + ++ L + S+L+EGG+A+
Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
S + R+VD +Y + + G SP+ + G D +E
Sbjct: 300 SALEQRIVDEAHVYIAPKIFGGTA-KSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358
Query: 356 GKNLCLQE 363
C +E
Sbjct: 359 VVYSCSRE 366
>gi|16759393|ref|NP_455010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29142835|ref|NP_806177.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213427850|ref|ZP_03360600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213650168|ref|ZP_03380221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|213855380|ref|ZP_03383620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
gi|289825059|ref|ZP_06544411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|25331497|pir||AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16501684|emb|CAD08872.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138467|gb|AAO70037.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 367
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSHAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|237739215|ref|ZP_04569696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 2_1_31]
gi|229423815|gb|EEO38862.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. 2_1_31]
Length = 369
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 111/365 (30%), Positives = 191/365 (52%), Gaps = 13/365 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EAG
Sbjct: 4 TVDKKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + GI
Sbjct: 64 EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAGI 123
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD ++E E K +L K ++ LK ++ D I S IT +++ +V
Sbjct: 124 KVDLGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRRGKSKWITNELAREKV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
LR + AI+VGI TVL D+P L R G+++ +P R+++DP+ + +DSK +
Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243
Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I+ + ++ V + + +K +L L + S+L+EGG+
Sbjct: 244 NDNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMKDILKELGKLNIDSVLLEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351
+ + ++D+ ++ + +IG+ + + + + +G ++
Sbjct: 304 GLISTAFKENVIDAGEIFIAPKIIGDNSSIPFINGFNFDSMEEVFKLSNPKFNIYGDNIS 363
Query: 352 LEYIG 356
+E+
Sbjct: 364 VEFEN 368
>gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21]
Length = 369
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 11/369 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S + M AL +R VG T+ NP+V C+IV+DG V+G G G PHAEV AL+
Sbjct: 1 MSDLHLKMMRLALCEARKGVGKTAPNPAVGCVIVRDGEVVGTGWHKKAGTPHAEVHALKA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSG+G+Q L
Sbjct: 61 AGEKAAGADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ +E E + ++ + + LK A++ D A S +T ++
Sbjct: 121 GIAVEVGLLEEESRELNLPFIKWIQTRLPFVVLKSALTLDGKSATASGDSKWVTSDRARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LR + DAI+VG+GTV DDP LTCR+ G P+R+I+D ++ L + ++
Sbjct: 181 EVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAVLGVPS 238
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A II T + D A + DL L L RGV S+L+EGG+
Sbjct: 239 KAQTIIATCSGDEAKMQALKAHGVEILTCCESDGRVDLADLFVKLGARGVQSVLLEGGSH 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353
+A + + + L+D +++ + ++G G+ EG +R G D+ +E
Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQMRVKRVGVDLLVE 358
Query: 354 YIGKNLCLQ 362
+ Q
Sbjct: 359 GVPAKTKSQ 367
>gi|168232389|ref|ZP_02657447.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194470692|ref|ZP_03076676.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194457056|gb|EDX45895.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205333401|gb|EDZ20165.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 367
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSGATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A]
Length = 357
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 115/355 (32%), Positives = 175/355 (49%), Gaps = 11/355 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++M A + G + NP V +I+KDG VIG+G G HAEV A+ A E+
Sbjct: 8 KYMKQAFNLAIKGEGFVNPNPLVGAVIIKDGKVIGKGYHKAFGQVHAEVDAINHATEDVA 67
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT +VTLEPCSH+G+ PPCA +IE GI+ V + DP+ V +G++ L GI V
Sbjct: 68 GATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVHY 127
Query: 129 MMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + G + KR + +K A++ D + S IT S+ VH LR
Sbjct: 128 GILDDLGLKVNDIFFHYITTKRPFVAMKYAMTLDGKLATKDFDSKWITNKKSRKYVHDLR 187
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ AILVG+ T++ DD +L R + +P+RIILDP + + ++KTA P I
Sbjct: 188 NKYSAILVGVNTIIKDDAKLDVR-RSKKSKNPVRIILDPKLQTPKSTYVVKTAKTQPTWI 246
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
V+E ++ + II DL KL+TIL + S+ +EGGA SF+ + L
Sbjct: 247 VSET----YDQSYVDLGVKIIQMPTIDLDKLMTILGEAKIDSIFIEGGAYTHASFLEANL 302
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
V+ + + + +IG +P+ + V F D+ +E K
Sbjct: 303 VNKVYAFIAPKIIGGKNALTPIGGEGVSLMKDAHVLKDVTYTQFDEDILIEGYFK 357
>gi|56414429|ref|YP_151504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|168818973|ref|ZP_02830973.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|197363349|ref|YP_002142986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|200389971|ref|ZP_03216582.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|56128686|gb|AAV78192.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197094826|emb|CAR60359.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|199602416|gb|EDZ00962.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205344221|gb|EDZ30985.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320084692|emb|CBY94483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 367
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|68171296|ref|ZP_00544696.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
Sapulpa]
gi|88658608|ref|YP_506994.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
Arkansas]
gi|67999277|gb|EAM85926.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
Sapulpa]
gi|88600065|gb|ABD45534.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str.
Arkansas]
Length = 360
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 134/357 (37%), Positives = 198/357 (55%), Gaps = 7/357 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ +D +FMS ALR +R +G NP+V C++V G+V+GRG T GG PHAEV AL
Sbjct: 1 MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNN 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+G+T YVTLEPCSHYG++ PCA +I+ G++R+V+ DPDVRVSG G++ L
Sbjct: 61 AGHLAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNA 120
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +M E + + +++ R IT+K+A + D I + S IT +++N
Sbjct: 121 GIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRN 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R+ DAI+VG T++ D+P L RL GL+ +SP+RI++D K+ IIKT+
Sbjct: 181 WVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ P I+T + ++ R K+L++ G+T L VEGG +
Sbjct: 241 VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSV--KIGITRLFVEGGGVLITE 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354
+ ++L+D II RS + G IPS + L NF V YF D+
Sbjct: 299 LLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEIL 355
>gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061]
Length = 361
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 112/358 (31%), Positives = 182/358 (50%), Gaps = 11/358 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL AG
Sbjct: 2 KDDVFYMKLAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALHMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A GA YVTLEPCSH+G++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI
Sbjct: 62 EKAEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + + L+ ++ ++ LK A+S D I A S ITG ++ +V
Sbjct: 122 EVDEGICKQEADRLNVPFFHFIQSDLPYVILKSAISLDGKIATAQLESKWITGTEARQEV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LR ++DA++ G+ T++ DD L + P+R+ILD ++ L +K +
Sbjct: 182 QQLRQEADAVITGVETIIQDDAGLIVK--DSIASQPIRVILDSTLRIPLHAKCLTDRRAE 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I + D +K ++ D+ +L +L R V S+LVE G V+
Sbjct: 240 TIICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDIHDVLRMLKERSVMSVLVEAGGNVSA 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
SF+ + LV+ ++Y + ++IG P+ E ++K V G D+ +
Sbjct: 300 SFLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKLKEAIRPADVEYSMVGKDIKMT 357
>gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1]
Length = 383
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 13/367 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E
Sbjct: 20 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 79
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + +
Sbjct: 80 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 139
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V ++E E + + + ++ +K A++ D I S I+G ++ QVH
Sbjct: 140 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 199
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + AI+VG+ TV+ DDP LTCR +P+RI+ D + + SKIIKTA
Sbjct: 200 FRHKVTAIMVGVNTVIQDDPLLTCR--LENGENPIRIVCDTDLRTPITSKIIKTANDIKT 257
Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I T + D +RK IIY + DL L+ L + SLL+EGG+A+ S
Sbjct: 258 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 317
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++VD + +Y + + G SP+ + G+D +E
Sbjct: 318 ALEQQIVDEVQIYIAPKIFGGSA-KSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 376
Query: 357 KNLCLQE 363
CLQE
Sbjct: 377 IYPCLQE 383
>gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 360
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 124/356 (34%), Positives = 184/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ A E+ARG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAEEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR + +K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVAIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+R+ILD ++ +++K+I I T
Sbjct: 181 NAAILVGANTVQEDNPSLTTRIPN--GRNPIRVILDSTLRIPMEAKVITDGEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N A K +L ++L +L +GV+SLL+EGG V SFI ++
Sbjct: 239 SNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 299 LIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDYRFIGYPE 354
>gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
BS1]
gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides
BS1]
Length = 371
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 176/359 (49%), Gaps = 13/359 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
R+MS L + G S NP V L+V DG +IG G G PHAEV A+
Sbjct: 11 QHERYMSRCLELAGKGAGYVSPNPMVGSLLVLDGQIIGEGYHERYGGPHAEVNAIASVKD 70
Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ R +T YV LEPCSH+G++PPC+ II+ I RVVV DP V+GRG+Q L G
Sbjct: 71 SEQLRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAG 130
Query: 124 IIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E + L+ + V+ ++LK+ + D I S ITG +++
Sbjct: 131 VEVIEGVLEERSLKLNEAFMKSHVKNIPFVSLKLGQTLDGKIATVNGLSKWITGQPARDH 190
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR++ DA++ G GT++ADDP LT R +P+R++LD +L +
Sbjct: 191 VHFLRSRYDAVMTGSGTIVADDPLLTVRHLP--GRNPLRVVLDRRLQLPETMNVYNGEAA 248
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298
V + + K + ++ R+ + ++L +L GV S+ VE G+ +
Sbjct: 249 TIVFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHVLHANGVLSVFVEAGSRL 308
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ S + S LVD I LY + + G G P ++ + +FG+D+ LE
Sbjct: 309 SGSLLQSGLVDKIYLYVAPKIFGGDGLDSFAPLGVDSPQGAISLRFESPVFFGNDLLLE 367
>gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
gi|224954496|gb|EEG35705.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353]
Length = 411
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 121/406 (29%), Positives = 179/406 (44%), Gaps = 59/406 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
++M A+ ++ G + NP V +IVKDG +IG G G HAE A+ A G
Sbjct: 4 EKYMRRAIELAKKGSGHVNPNPLVGAVIVKDGEIIGEGYHECYGQLHAERNAIANARKRG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
G+T YVTLEPC HYG++PPC + IIE I RVVV DDP+ VSG+G + L +KGI
Sbjct: 64 NNIEGSTIYVTLEPCCHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFKLLREKGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E H + ++ +K A++ D I S +TG S+ V
Sbjct: 124 EVIPHFLKEECDAMNHVFFHYISTGTPYVAMKYAMTMDGKIACYTGDSKWVTGEESRAHV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LR I+ GIGTVLADDP L+CR+ G P+RII D H ++ +DS++++TA
Sbjct: 184 QTLRNHYKGIMAGIGTVLADDPMLSCRIEG--GRDPVRIIADSHLRIPMDSQLVRTAKQQ 241
Query: 244 PVIIVT------------------------------------------------ENDDPV 255
P+I+ D
Sbjct: 242 PLIVACLPDADETKAVQLEEKGVEVLRIPGIAVNDFSGSSSDSVLKYKDRLLADNLADNN 301
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
++ I + L L+ L R + +L+EGG + S + + +V + Y
Sbjct: 302 ISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGILLEGGGQLNESALQAGIVQRVYCYI 361
Query: 316 SQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ + G +P+E L K +F + FG D+ LEY
Sbjct: 362 APKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQEFGQDILLEYER 407
>gi|62179027|ref|YP_215444.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62126660|gb|AAX64363.1| pyrimidine deaminase/reductase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322713488|gb|EFZ05059.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 119/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+G++PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGQTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|254511482|ref|ZP_05123549.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
KLH11]
gi|221535193|gb|EEE38181.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium
KLH11]
Length = 358
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 127/354 (35%), Positives = 185/354 (52%), Gaps = 11/354 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL +AGE A+GA
Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALAQAGEAAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYV+LEPCSHYG++PPCAQ +I G+ RVV ++D D RV+G+G L GI V +
Sbjct: 61 TAYVSLEPCSHYGKTPPCAQVLIGAGVARVVSAIEDSDPRVAGQGFDMLRAAGIEVTSGV 120
Query: 131 ESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E HA + + R +TLK+A S D I S ITG +++ VH +RA+
Sbjct: 121 LAEQAAQDHAGFFLKTEQGRPFVTLKLASSFDGRIATETGHSQWITGPMARRAVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT ADDP LT R + H P+R+++ H + L + +TA PV +
Sbjct: 181 HDAVMVGAGTARADDPSLTVR-DLGVTHQPVRVVVSRHLDVPLMGHLARTATQMPVWLCH 239
Query: 250 ENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + LL L G+T + EGG+A+A S +
Sbjct: 240 GPHPDAERARAWEGLGARLIPCALDGHHVEAADLLQQLGQAGLTRVFCEGGSALAASLLA 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
LVD ++ + + + IG G+P+ L+ F + G D+ +
Sbjct: 300 GDLVDELVGFTAGLAIGAEGLPAIGVLGLDTLEGAPRFDLIETQAIGGDILHRW 353
>gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
2782]
gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM
2782]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 108/366 (29%), Positives = 181/366 (49%), Gaps = 11/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ +M A S+ G T+ NP V +IVKDG +I G G HAEV A + A
Sbjct: 2 NIHEFYMKRAFEISKGGWGRTNPNPLVGAVIVKDGEIISEGFHEALGGAHAEVCAFQNAT 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT YV LEPCSHYGR+PPCA+ I E GI+ VVV + DP+ +VSG+G+Q L I
Sbjct: 62 SDISGATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANI 121
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + ++ ++ + +K A++ D I S I+ S+ V
Sbjct: 122 NVIVGVLEEEARRLNEIFIHYITKQLPFVIMKTAMTLDGKIASVTGDSRWISSEPSREYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL- 242
H +R + +I+VG+ T++ D+P LT R + P+RI++D ++ +DS++I
Sbjct: 182 HKIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVDSRGRIPMDSRVINGDSNA 241
Query: 243 ----APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
A + ++ + L + I +L +L+ L + S+L+EGG +
Sbjct: 242 GLILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMRELYKLEIDSVLLEGGGNL 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
S + + +V+ ++ + S +IG +P+ +E+ +R + F DV +E
Sbjct: 302 NFSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDAIALSDIRVEGFDRDVLIE 361
Query: 354 YIGKNL 359
+
Sbjct: 362 GYIADE 367
>gi|168261151|ref|ZP_02683124.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|205350075|gb|EDZ36706.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 120/367 (32%), Positives = 175/367 (47%), Gaps = 18/367 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYIG 356
VCL +
Sbjct: 360 VCLHMVN 366
>gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 186/363 (51%), Gaps = 14/363 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
R+M AL ++ G T NP V C++VK+G +IG G G HAE+ AL AG EA
Sbjct: 3 ERYMRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMAGSEA 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G+TAYVTLEPCSH GR+ PCA ++E G++ V++ DP+ VSG G++ L + G+ V
Sbjct: 63 KGSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQ 122
Query: 128 RMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + + L+ V + ++TLK AVS D I S IT ++ VH L
Sbjct: 123 TGILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRL 182
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R+++ AI+VG+ TVL D+P LT R+ +P+R+I+D H + +D+ + L I
Sbjct: 183 RSENQAIIVGVDTVLKDNPSLTARIAN--GRNPIRVIVDSHLRTPVDAIVTTDGLAPTWI 240
Query: 247 IVTENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ R + + DLK+++ L ++S L+E G + +
Sbjct: 241 FTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNAA 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YI 355
F+ ++LV +I+Y + +IG P+ LE ++K G D+ L Y+
Sbjct: 301 FLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDKMADALPLAFSEATQIGPDLKLTAYV 360
Query: 356 GKN 358
+
Sbjct: 361 VSD 363
>gi|167551773|ref|ZP_02345526.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205323400|gb|EDZ11239.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQGDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|16763796|ref|NP_459411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161615396|ref|YP_001589361.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167992266|ref|ZP_02573364.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168240239|ref|ZP_02665171.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194442362|ref|YP_002039658.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194449088|ref|YP_002044451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|197264648|ref|ZP_03164722.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|224582254|ref|YP_002636052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|16418920|gb|AAL19370.1| pyrimidine deaminase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161364760|gb|ABX68528.1| hypothetical protein SPAB_03167 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401025|gb|ACF61247.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407392|gb|ACF67611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197242903|gb|EDY25523.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205329484|gb|EDZ16248.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205339872|gb|EDZ26636.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|224466781|gb|ACN44611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261245699|emb|CBG23495.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992127|gb|ACY87012.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301157027|emb|CBW16510.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911449|dbj|BAJ35423.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225143|gb|EFX50204.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323128735|gb|ADX16165.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332987364|gb|AEF06347.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 367
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Bacillus pumilus SAFR-032]
gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Bacillus pumilus SAFR-032]
Length = 361
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 111/359 (30%), Positives = 185/359 (51%), Gaps = 11/359 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL+ A
Sbjct: 2 KDDVFYMELAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALQMAR 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+A+GA YVTLEPCSHYG++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI
Sbjct: 62 EKAKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGI 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + + L+ ++ ++ LK A+S D I A S ITG ++ +V
Sbjct: 122 EVDEGICKQEADRLNVPFFHFIQSDFPYVILKSAISLDGKIATADLESKWITGTEARKEV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LR ++DA++ G+ T++ DD L + + + + P+R+ILD ++ L +K +
Sbjct: 182 QQLRQEADAVITGVETIIQDDAGLIVKDSNMTQ--PIRVILDSTLRIPLHAKCLTDRRAE 239
Query: 244 PVIIVTENDDPVLAL---AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I ++ D + + D+ +L +L R V S+LVE G +V+
Sbjct: 240 TIICISRMYDQKKYELLIEKGHQVYITSGEERTDIHDVLRMLKERSVMSVLVEAGGSVSA 299
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
SF+ + LV+ ++Y + ++IG P+ E ++K V G D +
Sbjct: 300 SFLEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKLKEAIRPADVEYSMVGKDFKMTL 358
>gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
11-1]
gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
11-1]
Length = 365
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 124/361 (34%), Positives = 178/361 (49%), Gaps = 8/361 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+FD M+ AL+ + + NP V C++ KDG V+G G G PHAEV AL
Sbjct: 4 TFDAFDHACMARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALR 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G+ RVV + DP RV G G L
Sbjct: 64 EAGERARGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQA 123
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V ME + + +L+R R + +K+A S D MA S ITG ++
Sbjct: 124 AGIAVAAGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V RA+S AIL G TVLADDP LT R + P+R++LD + +
Sbjct: 184 ADVQRWRARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLRS--LAMPRVR 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
AP + + D + + DL+ L +L GR + + VE G A+
Sbjct: 242 DGSAPTLYLHGPDAVPPPGLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALC 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ +++ LVD ++LY++ +V+G+ P +E V G D L
Sbjct: 302 GALLHAGLVDELLLYQAPLVLGDTARPLFAGLGIEAMAQRLRLELVEAAMVGDDRRLLLR 361
Query: 356 G 356
Sbjct: 362 P 362
>gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
marina DSM 3645]
gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula
marina DSM 3645]
Length = 373
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 114/365 (31%), Positives = 170/365 (46%), Gaps = 14/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D R M AL+ + G NP V C++V+ G VIGRG A G PHAE AL
Sbjct: 1 MQFSADDERHMREALQLAALGQGAAEPNPMVGCVLVQHGQVIGRGYHAKYGGPHAERAAL 60
Query: 61 EEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ G++ GATAYVTLEPC H+G++PPC +I + RVV+ DP V G G+ L
Sbjct: 61 SDCGDKQVNGATAYVTLEPCCHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGIDQL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + L+A + R + K A++ D + S I+ +
Sbjct: 121 KAAGISVQVGLLEAEAQRLNAPYRKLLATGRPWVIAKWAMTLDGKLATHTGHSRWISNEL 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ +VH LR + DAI+VG T DDP LT R +P+R+++D LS ++++
Sbjct: 181 ARERVHQLRGRMDAIVVGSRTAQLDDPLLTVR--PAGLRTPLRVVVDGDATLSPTHQLVQ 238
Query: 239 TALLAPVI-----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
TA PV+ L A + + L LL L R +T++LVE
Sbjct: 239 TAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADHGQRLDALLIELGQRRLTNILVE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGS 348
GGA + F+ +D + + + +IG PSP+ V + G
Sbjct: 299 GGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGGDGWSDMSEALALSDVSIESLGD 358
Query: 349 DVCLE 353
+V +
Sbjct: 359 NVLMH 363
>gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 366
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 118/358 (32%), Positives = 175/358 (48%), Gaps = 13/358 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
+M+ AL ++ G T NP+V +IVKDG +IG+G G PHAE +A+++A +
Sbjct: 5 EYYMNIALDLAKERKGYTHPNPTVGAVIVKDGKIIGKGFHYKAGMPHAEREAIKDAKSKG 64
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
RG+T +V+LEPC HYG++PPC + I+E GI +VVV DP+ V+G+G++ L QKG+
Sbjct: 65 FDLRGSTIFVSLEPCCHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGV 124
Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + ++ + +KR + +K+A + D I S IT S+
Sbjct: 125 EVVLGVLEKQAQKINEDFFIYITQKRPFVHIKVAQTIDGKIATKTGSSKWITSQESRKYA 184
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H+LR Q+ A+LVG T D+P LT R E P+R++LD K+ L+ I
Sbjct: 185 HILRNQATAVLVGSNTAQLDNPSLTVRYI-QTERQPIRVLLDSKLKVPLNYNIYSKEADT 243
Query: 244 PVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
VI E D + K Y +K +L IL + LLVEGG V
Sbjct: 244 IVITSKEADPYKKEILSKQSNVKLYTLDTYNGKFKIKDILEILYQNQIVHLLVEGGKEVI 303
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
SFI D I L+ + ++GE GI S + + FG D E
Sbjct: 304 TSFIKEDFWDKISLFTAPKIVGEDGISSFGSLGVNDINESIKLKVEDFKRFGDDFYFE 361
>gi|71892014|ref|YP_277744.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796120|gb|AAZ40871.1| pyrimidine deaminase/reductase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 379
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 122/373 (32%), Positives = 172/373 (46%), Gaps = 20/373 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D RF++ AL+ + T NP+V C+IV++ +IG G G HAE+ AL AG
Sbjct: 8 HDKRFLTRALQLAWKGRFTTMPNPNVGCVIVRNNKIIGEGYHIRAGEAHAEIHALRIAGN 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GATAY+TLEPCSHYGR+PPC +I GI+RVVV + DP GRGL L Q GI
Sbjct: 68 LAQGATAYITLEPCSHYGRTPPCTTALINAGIKRVVVAMLDPHFYARGRGLHLLQQAGIE 127
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M E + +L R + LK+A S D M+ S IT ++ V
Sbjct: 128 VQHSLMLPEAESINRGFLKRIRTGFPWVKLKLAASLDGRTAMSSGESKWITSIQARQDVP 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA+SD IL GTVLADDP+L R + RI + + L I + P
Sbjct: 188 RFRAESDVILSTAGTVLADDPKLNVRWECFSDEMK-RIYANNQIRQPLRVIIDSANRVLP 246
Query: 245 VIIV--------------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
V + P +IN +L +L+ L R + ++
Sbjct: 247 THRVIRYEGKILLVRLKKDHRNWPSSVEQLLLSSINCHGHHRINLTELMQHLGYREINNI 306
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346
VE GA + ++ LVD +ILY++ +G P ++ K+F +
Sbjct: 307 WVEAGATFSGVLLDIGLVDELILYQAIKFLGSDARPLCLLPNIKCLNDIKSFKLLDIKNI 366
Query: 347 GSDVCLEYIGKNL 359
G D+ L I K +
Sbjct: 367 GPDLRLRLIPKGM 379
>gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
Length = 364
Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats.
Identities = 106/351 (30%), Positives = 173/351 (49%), Gaps = 9/351 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+
Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI V+
Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDVEI 120
Query: 129 MMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + L+ ++++ + LK+A S D + S IT ++ V R
Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A+S A+L TV+ D+ L R L + + + + + L P +
Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKD-HYAEDELRQPIRVILDRQNQLRPELK 239
Query: 248 VTENDDPVLA--LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + VL A + DL L+ L + + VE GA +A S I +
Sbjct: 240 LFQTPTSVLRVAEASADIEVGTTEVGQLDLHDLMRQLPANHIDHIWVEAGATLAKSLIEA 299
Query: 306 RLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
RLVD +ILY + ++G G L + G D+ +
Sbjct: 300 RLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350
>gi|168465506|ref|ZP_02699388.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|195631795|gb|EDX50315.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
Length = 367
Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats.
Identities = 123/366 (33%), Positives = 178/366 (48%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M SE + +L R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEVEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDAVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
4166]
Length = 366
Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 180/368 (48%), Gaps = 17/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AG
Sbjct: 2 TTDHAWMARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI
Sbjct: 62 ERARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGI 121
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + + R ++ K+A+S D MA S ITG ++ +V
Sbjct: 122 EVASGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLD 233
LRA+S +L G TVL D LT R L + P+R+++D ++ LD
Sbjct: 182 QRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLD 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + V +V ++ ++ + DL LL L RG +LVE
Sbjct: 242 APFFQAGPALVVTVVAGCEETYRRAG---HEALVLGQERVDLTSLLRELAARGANEVLVE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
G + +F + L+D L+ + +G P PLE + V G D
Sbjct: 299 AGPRLVGAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDDW 358
Query: 351 CLEYIGKN 358
+ N
Sbjct: 359 KILARPAN 366
>gi|255261262|ref|ZP_05340604.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
gi|255103597|gb|EET46271.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62]
Length = 363
Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats.
Identities = 141/361 (39%), Positives = 185/361 (51%), Gaps = 12/361 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DAR+M+ AL R +G NPSV C+IVKDG V+GRG T GG PHAE AL AG
Sbjct: 3 DARWMALALELGRRGLGRVWPNPSVGCVIVKDGRVVGRGWTQDGGRPHAETHALAAAGTA 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG+ YVTLEPCSHYG +PPCAQ +I+ G+ RV+V D D RVSGRG L GI V
Sbjct: 63 ARGSDVYVTLEPCSHYGHTPPCAQALIDAGVSRVIVAAGDSDPRVSGRGYAMLRDAGICV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D ESE + L + R R +TLK+A S D I A S ITG ++ VH+
Sbjct: 123 DIGLCESEARNDLAGFFKRIETGRPWVTLKLANSFDGRIATASGDSQWITGADARRYVHM 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+ DA++VG GTV AD+P L R + P+R++L L D K+ TA PV
Sbjct: 183 SRARHDAVMVGAGTVRADNPSLNVR-DLGVARQPIRVVLSRKLDLPTDCKLAVTAGDPPV 241
Query: 246 IIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
I+ +D + + D L L +G+T + EGG A+A
Sbjct: 242 WILHSDDASQSRIEDWTGHGANCLAAGPEAHRQLDPSACLQTLGAQGLTRVYCEGGGALA 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S + + L+D +I Y + + IG G PS L F + G+DV +
Sbjct: 302 ASLLGAGLIDEVIGYTAGVAIGAEGTPSLGALGLSVLAEAPRFQLLETRAIGADVLHRWR 361
Query: 356 G 356
Sbjct: 362 P 362
>gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
2603V/R]
gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
A909]
gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
H36B]
gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae
2603V/R]
gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
A909]
gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
H36B]
Length = 369
Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 12/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+
Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+
Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E ++ K+ + LK A++ D I S I+ S+ V L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTW 242
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T +D+ ++ DLK L+TIL G+ SLL+EGG+++ S
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+ + +V+ +I++ + +IG + + L + SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358
>gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Magnetococcus sp. MC-1]
gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Magnetococcus sp. MC-1]
Length = 376
Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats.
Identities = 135/360 (37%), Positives = 184/360 (51%), Gaps = 15/360 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M ALR + +G T NP+V C+IVK+ +IGRG G PHAEV+AL AGE
Sbjct: 9 DRAYMDHALRLAARGLGRTRPNPTVGCVIVKEDRIIGRGWHRKAGGPHAEVEALRMAGEA 68
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPC + +I+ GIRRVV ++DP+ VSG+G Q L Q G++V
Sbjct: 69 ARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQRLKQAGVVV 128
Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L ++ R +TLK A S D S ITG ++ + H
Sbjct: 129 QVGVREEAAQMLIRPFITRILHNRPMVTLKSAASLDGKTATRERHSQWITGEAARKRGHR 188
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR D IL GI TVLADDP LTCR P+R+++D KLS ++ +I APV
Sbjct: 189 LRDTHDVILTGIQTVLADDPRLTCR--LKGGRDPIRVVVDSSLKLSENAGVINPDSTAPV 246
Query: 246 IIVTENDDPVLALAFR-------KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ T P A DL L+ L R +TS+L E G +
Sbjct: 247 WVATTLRAPEEKRALFALLPGVEVIMCAEDDTGRVDLYDLMEKLAKREITSVLAEAGGVL 306
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
+ + ++ RLVD I L+ + ++IG L+ K V D+ +E
Sbjct: 307 SGALLDKRLVDRIALFMAPMLIGGREASGILDSLGAAKLTEAPRLDHVTLTSLDGDLLVE 366
>gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermaerobacter marianensis DSM 12885]
gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermaerobacter marianensis DSM 12885]
Length = 427
Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats.
Identities = 138/360 (38%), Positives = 183/360 (50%), Gaps = 15/360 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FM ALR + G T NP V +IV+DG V+G G G PHAE++AL AGE
Sbjct: 35 DRAFMRRALRLASRARGRTHPNPMVGAVIVRDGEVVGEGFHRRAGEPHAEIEALRMAGER 94
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPC HYGR+PPC II G+RRVVV + DPD RV+GRG+ L+ GI V
Sbjct: 95 ARGATLYVTLEPCCHYGRTPPCTGAIISAGLRRVVVAMVDPDPRVAGRGIAALAAAGIEV 154
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+E E L+ R +T K A++ D I A S +TG ++ H
Sbjct: 155 AVGLEEEAARRLNEAYIVHRRLGRPMVTAKYAMTLDGRIATARGDSRWVTGIRARRWAHR 214
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLA 243
LR + DAILVG+GTVLADDP LT RL+ P+RI+LD H + +++++ A
Sbjct: 215 LRDRVDAILVGVGTVLADDPLLTVRLHP-GGRDPLRIVLDSHARTPPTARVVQVARQSPA 273
Query: 244 PVIIVTENDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P + P R + L LL +L GV LLVEGGA+
Sbjct: 274 PTWVAVTPGAPAARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGAS 333
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
V +F +RLVD ++ + + G P P+ +E+ V GSD +
Sbjct: 334 VHGAFFGARLVDRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSDWLI 393
>gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
315-B]
gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis
315-B]
Length = 372
Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 14/363 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
+MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE
Sbjct: 10 YMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAQKNGES 69
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L G +
Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH
Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+++AI+VGIGTVL DDP L R+ G + +P +I++D ++ LD+K++ ++ +
Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYGNYK-NPTKILVDSKLRIPLDAKLLSSSDAPTI 248
Query: 246 IIV-----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
I TE + + +A + DL L + L + S+L+EGG + +
Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
S + LVD +I + +IG G+ EG + + G D+ +
Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEGISLMKDAIKIKDFQVEKMGQDILINAYV 368
Query: 357 KNL 359
Sbjct: 369 DKE 371
>gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
str. ATCC 3626]
gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B
str. ATCC 3626]
Length = 365
Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 178/361 (49%), Gaps = 13/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL +R G + NP V +IVK G +IG+G + G HAE+ ++ + +
Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINSINSSIK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG++PPC + II+ ++RVVV DP+ VSG+ ++ L + GI
Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGIE 120
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + I + E R I LK A++ D I S IT S+ VH
Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALL 242
LR + +I+VGI TVL D+P+L CRLN +E RI+LD ++ LDS+I+K
Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
+ +I T N + K + D K+ L + + S+L+EGG
Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
+ +F+ ++ V+ I + + V G +P+E + F V F D+ +
Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360
Query: 353 E 353
E
Sbjct: 361 E 361
>gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
Length = 383
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 112/362 (30%), Positives = 172/362 (47%), Gaps = 12/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M+ A+ ++ T+ NP+V C++VKD +IG G G HAEV AL
Sbjct: 7 FTEHDKLYMARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNALAV 66
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A+GATAYVTLEPCSHYGR+PPCA+ + GI++V+ + D + +V+G+GL+ LS
Sbjct: 67 AGEKAQGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDA 126
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +E E + + R + ++T K+A S D + S ITG ++
Sbjct: 127 GIEVAHGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARK 186
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V L RAQS AIL G TVL D+ +L R + L P + L ++ +DS+ T
Sbjct: 187 DVQLYRAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPD 246
Query: 242 -------LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+I T+ D+ + F K DL +L L ++ +E
Sbjct: 247 LALFKIAHPVIIFTTKVDNSMQWPHFVKHIAVREQQGKVDLTDVLQTLAKHQFNNIWLEA 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
GA +A L+D + Y + ++G L + G D+
Sbjct: 307 GATLAGKMTELDLIDEYVFYIAPKLMGYDAKSLVNFPELTSMQDTIDLSFNECVRIGDDL 366
Query: 351 CL 352
+
Sbjct: 367 RI 368
>gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
Length = 370
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 176/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V +E E + +++R + +K+ S D + S IT
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A ++ DL +L L R + L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2]
Length = 360
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 125/355 (35%), Positives = 184/355 (51%), Gaps = 11/355 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDREAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N A K +L ++L +L +GV+SLL+EGG V SFI ++
Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
L+D IILY + +IG PS +E + K F + G D
Sbjct: 299 LMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP 353
>gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 366
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 122/363 (33%), Positives = 180/363 (49%), Gaps = 8/363 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D FMS AL + + NP V ++VKDG VIGRG G PHAEV AL+EA
Sbjct: 3 TEQDLAFMSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G ARGATAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G
Sbjct: 63 GAAARGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAG 122
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
++ + L+ R R + LK A+S D + +A S +TG ++
Sbjct: 123 VVAEEGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V RA++ AILVGIGTVLAD+P L RL P+++I+D H + D+ + T
Sbjct: 183 VQQERARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGA 242
Query: 243 APVIIVTENDDPVLALAFRKKN---INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + A D ++++ +L R + +LVE G VA
Sbjct: 243 VWIFHGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVA 302
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S + L+D +LY + +++G P P + + ++ G+D+
Sbjct: 303 ASLFAAGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLR 362
Query: 356 GKN 358
+
Sbjct: 363 PQE 365
>gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
HAW-EB4]
gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
HAW-EB4]
Length = 373
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 128/373 (34%), Positives = 197/373 (52%), Gaps = 20/373 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL A
Sbjct: 3 SIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L G
Sbjct: 63 GADAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAG 122
Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD + +E ++ +L R + +T+K+A S D ++ S ITG +++
Sbjct: 123 IRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARSD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKLSL 232
V LRA+ A++ G+ T+LADDP L R + + H P+R++LD +L
Sbjct: 183 VQRLRARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLGT 242
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCRDLKKLLTILVGRGVTS 289
+ + + +P+++V+ P A ++ D R + L L+G+ +
Sbjct: 243 ELNLFNS--ASPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLLGKSCNT 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDY 345
+LVE GA +A +F+N LVD I+LY++ ++G G + + +
Sbjct: 301 VLVEAGATLAGAFVNQGLVDEIVLYQAMKILGGQGRNLLALDDFQAMSDIPRINLIDERK 360
Query: 346 FGSDVCLEYIGKN 358
G D L N
Sbjct: 361 VGKDTRLTLRVSN 373
>gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae
TIGR4]
Length = 360
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 115/363 (31%), Positives = 177/363 (48%), Gaps = 13/363 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E GA
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V +
Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + ++ + ++ +K A+S D I S IT ++ VH LR
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHH 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINS 305
++D ++ I+ + L+ L + SL++EGG+ + S +
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKNLC 360
++VD + +Y + V G P+ + G+D +E C
Sbjct: 299 QIVDELKIYIAPKVFGGSA-KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPC 357
Query: 361 LQE 363
QE
Sbjct: 358 SQE 360
>gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
CJB111]
gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
CJB111]
Length = 369
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 12/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+
Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+
Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E ++ K+ + LK A++ D I S I+ S+ V L
Sbjct: 125 VGILREECDALNERFIFYMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTW 242
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T +D+ ++ DLK L+TIL G+ SLL+EGG+++ S
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+ + +V+ +I++ + +IG + + L + SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358
>gi|310657724|ref|YP_003935445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Clostridium sticklandii DSM 519]
gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Clostridium sticklandii]
Length = 382
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 114/366 (31%), Positives = 170/366 (46%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +FM AL + G + NP V +IVKDG VIG G G HAE++A+
Sbjct: 17 MLESDEKFMKLALSLAEKGRGYVNPNPLVGAVIVKDGKVIGEGYHTAFGKSHAEIEAINS 76
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E+ + AT YVTLEPC H G++PPC + II+ + RVVV DP+ VSG G++ L Q
Sbjct: 77 ATEDIKSATMYVTLEPCCHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQS 136
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
I + + E KI ++ LK A+S D I S IT S+
Sbjct: 137 NIEITVGVLEEMAKIQNEVFIHYMTTNLPFTILKYAMSLDGKIACHTGDSKWITSEKSRT 196
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LR+ A++ GIGT+L+DD L RL + P RI++D ++SLD+KII
Sbjct: 197 DVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHRIVVDSAARISLDAKIINLDS 256
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGA 296
+ I L + I ++L L G+ S+L+E G
Sbjct: 257 KSDTYIAVTEAASDGKLRKLEDYGAKIIMTKSKDGKVDLEELWKELGFLGMDSILIEAGE 316
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351
++ + + ++LV+ I Y + +IG SP+ N + + +D
Sbjct: 317 QLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPIGGYGASSMSEVINLKSMNFTHIENDFV 376
Query: 352 LEYIGK 357
+E K
Sbjct: 377 VEGYIK 382
>gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Carnobacterium sp. 17-4]
gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Carnobacterium sp. 17-4]
Length = 355
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 120/357 (33%), Positives = 183/357 (51%), Gaps = 14/357 (3%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
AL +R G T+ NP V +IVK G VIG+G G PHAEV A+ A ++ GAT
Sbjct: 1 MALDLARKGKGWTTPNPLVGAVIVKGGRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATL 60
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
YVTLEPCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI V +
Sbjct: 61 YVTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLE 120
Query: 133 EGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
E ++ V K + +K A+S D I S I+G S+ QVH LR +
Sbjct: 121 EESQKLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELA 180
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
I+VGI T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T
Sbjct: 181 GIMVGIETIIKDDPQLTSR--TLNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTK 238
Query: 252 DDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
L K+ + ++L+ ++ +G+ S+L+EGGA + S +
Sbjct: 239 RANNEKLETLKQMGIEVIVTKEKYGRVDLQELMKVVGAKGIDSILLEGGATLNFSALEEG 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357
+VD I Y + +IG + +E L+ F R G D+ +E YI K
Sbjct: 299 IVDKIQSYIAPKIIGGKEAKTAVEGAGVHSLKSAFQIDRMTPVMVGEDLFVEGYIVK 355
>gi|168237529|ref|ZP_02662587.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194734520|ref|YP_002113449.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194710022|gb|ACF89243.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197289553|gb|EDY28916.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 367
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 175/366 (47%), Gaps = 18/366 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + L+ R ++ LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLD 233
LRAQS AIL TVLADDP LT R P+RI++D +++
Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+I++ I +D + + DL L+ L + + S+ VE
Sbjct: 242 HRIVQQPGE--TWIARTQEDSRAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
G +A + + + LVD +I+Y + ++G LE+ F + G D
Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359
Query: 350 VCLEYI 355
VCL +
Sbjct: 360 VCLHMV 365
>gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
Length = 378
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
FM AL + G S NP V C++V++G V+G G G PHAEV+AL AG
Sbjct: 18 HQYFMHMALSLALRGTGFVSPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRAGTL 77
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G+T YV LEPCSH G++PPCA ++E + R VV + DP+ RV GRG+ L GI V
Sbjct: 78 AEGSTVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEV 137
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ E + ++ R R +TLK A+S D + S ITG +++++ HL
Sbjct: 138 LESVLPEEARWINRGFIRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHL 197
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + DAILVG+GTVL DDPELT R ++ P R++LD + +K++ +
Sbjct: 198 LRGEHDAILVGVGTVLLDDPELTVR--SVEGVCPRRVVLDGALRTPQTAKVLASGGCTFF 255
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAVAHSF 302
L R I + L+ L G+ +LLVEGGA VA SF
Sbjct: 256 TEQDMPQGAGQRLEERGAEICRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARVAGSF 315
Query: 303 INSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ +LVD + L+ + ++G G G LE + R G D+ LE +
Sbjct: 316 LREKLVDEVSLFLAPKLLGRGLQLGESWGLEHLDQGFDLRSCRIRQAGEDLWLEGVP--T 373
Query: 360 CLQEL 364
C L
Sbjct: 374 CSPAL 378
>gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
Length = 370
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 176/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C+IV+D VIG G T G HAEVQA+++
Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V +E E + +++R + +K+ S D + S IT
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A ++ DL +L L R + L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515]
Length = 369
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 12/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+
Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+
Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E ++ K+ + LK A++ D I S I+ S+ V L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTW 242
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T +D+ ++ DLK L+TIL G+ SLL+EGG+++ S
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+ + +V+ +I++ + +IG + + L + SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358
>gi|239993720|ref|ZP_04714244.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC
27126]
Length = 379
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 106/367 (28%), Positives = 168/367 (45%), Gaps = 14/367 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
D +M+ A++ ++ TS NP V C+IV + ++G+G G PHAEV AL A
Sbjct: 7 KNDYFWMAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHA 66
Query: 64 GEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A+GATAYVTLEPCSH+GR+PPCA ++E + RVV+ + DP+ V G G+ L
Sbjct: 67 SNARPQGAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISIL 126
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + + L+ +++ + +K+ +S D I + S ITG
Sbjct: 127 QEAGIEVVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAE 186
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK--- 235
++ V RAQS +L G GTV AD+P L R Q + + ++ +DSK
Sbjct: 187 ARRDVQQYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKL 246
Query: 236 -IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T I T A + DL L++ L + + VE
Sbjct: 247 TRDYTLFNDGNITFTATSQAHPDTATQHYLQLDEKDGKLDLHALMSALGDKQYNEVWVEA 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDV 350
G +A + + LVD +I Y++ ++G+ G+ + N + G+D+
Sbjct: 307 GPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVGNDI 366
Query: 351 CLEYIGK 357
L +
Sbjct: 367 KLIFRPD 373
>gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4]
gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella loihica PV-4]
Length = 386
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 16/370 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S FD++ M+ A++ +R TS NP+V C+IV+ ++G G G PHAEV AL
Sbjct: 5 MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVVV V DP+ +VSGRG++ L
Sbjct: 65 RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI+V+ + E L+ +++ + +K+A S D ++ S ITG +
Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFK 229
+ V +RA+ DA++ GI TVLADDP L R P+R++LD +
Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVT 288
L +K+ +T ++ + V + + + + + + K L +G +
Sbjct: 245 LGAKAKLFETQSPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGSQLN 304
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRD 344
S++VE GA +A +F+ L D ++LY++ ++G G Y E
Sbjct: 305 SVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLCDER 364
Query: 345 YFGSDVCLEY 354
G+D L +
Sbjct: 365 AIGADRRLTF 374
>gi|328951151|ref|YP_004368486.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
DSM 14884]
gi|328451475|gb|AEB12376.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis
DSM 14884]
Length = 390
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 115/375 (30%), Positives = 174/375 (46%), Gaps = 23/375 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D R+M AL+ + G T NP V ++VKDG ++G G G PHAEV AL +
Sbjct: 1 MSHLDERYMRRALQLAERARGHTHPNPLVGAVVVKDGRIVGEGYHPRAGLPHAEVFALRQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGAT YVTLEPC+H+GR+PPC ++E G+ RVVV DP+ + G GL+ L+Q
Sbjct: 61 AGEAARGATVYVTLEPCNHHGRTPPCTTALLEAGVARVVVAARDPNPKAQG-GLERLAQA 119
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + E+E + + + R + K A + D + + +TG S+
Sbjct: 120 GVAVQWGVLEAEARAQNEVFFHGLEQNRPFVLWKAATTLDGRVATRTGHAQWVTGPQSRR 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDP----------ELTCRLNGLQEHSPMRIILDPHFKLS 231
H R AI VG+GTVLADDP L P++++ D +
Sbjct: 180 IAHAYRQSLAAIAVGVGTVLADDPALTVRDPEFRPYPWMLEPPPLRDPLKVVFDTQARTP 239
Query: 232 LDSKIIKTALL---APVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILV 283
+++ A V++ P L A + L+ L L
Sbjct: 240 PQARLFAPGPRGEPARVVVFVGAAAPLERTRALEAAGARVVPLPDEEGRPSLRAALEWLW 299
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMC 340
G+ LL+EGG +A +F+ + LVD + L+ + ++GEG
Sbjct: 300 NEGIDGLLLEGGPTLAGAFVRAGLVDKLALFLAPKLVGEGRPLLAGLGAARMDEALGVTL 359
Query: 341 VRRDYFGSDVCLEYI 355
RR++ G ++ LE
Sbjct: 360 TRREWVGEELWLEGR 374
>gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Roseburia intestinalis M50/1]
Length = 366
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 15/364 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G
Sbjct: 4 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI
Sbjct: 64 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V + + E + + K ++ +K A++ D I A S ITG ++ QV
Sbjct: 124 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSQWITGEAAREQV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R + I+VG GTV+ADDP L CR Q P+RI+ D ++ L S+I++TA
Sbjct: 184 HRMRHEMTGIMVGAGTVIADDPMLNCR--LPQTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 241
Query: 244 PVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
II T D ++K I DLK+L+ L G+ S+L+EGGA +
Sbjct: 242 NTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEGGAMLN 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
S + + +V+ + Y + + G SP+ ++ + R G D+ +
Sbjct: 302 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLVSQRVQQVGEDILIAG 361
Query: 355 IGKN 358
KN
Sbjct: 362 ELKN 365
>gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 12/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+
Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+
Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E ++ K+ + LK A++ D I S I+ S+ V L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTW 242
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T +D+ ++ DLK L+TIL G+ SLL+EGG+++ S
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+ + +V+ +I++ + +IG + + L + SDV +E
Sbjct: 303 LEAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358
>gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans
DMS010]
gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans
DMS010]
Length = 368
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 108/359 (30%), Positives = 167/359 (46%), Gaps = 9/359 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM+ A++ + + T NP V C+IVK+ +IG G G HAEV A++ AG A
Sbjct: 5 EHFMARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAIQAAGHAA 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GA YVTLEPCSH+GR+PPC +I ++RV V + DP+ VSG G+ L Q G+ V
Sbjct: 65 EGADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVH 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ ++ + + R + I K+A+S D MA S ITG ++ V L
Sbjct: 125 TDILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+S AI+ GIGTVLADDP L P + ++ +DSK+ +
Sbjct: 185 RARSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARIL 244
Query: 246 IIVT---ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
A + + D DL L+++L R V L+VE G + +
Sbjct: 245 QEKRVLLATAQDKKAPNGAESIVLPEDGDIIDLTALMSVLAQREVNELMVEAGGVLNGAM 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +RL+D +++Y + ++G+ +E + G D + I +
Sbjct: 305 LKARLIDELVIYMAPKIMGDMARGVFHLPGMETMAQNISLNITDMRPIGKDWRITAIPE 363
>gi|27380142|ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
gi|27353296|dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110]
Length = 382
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 154/363 (42%), Positives = 211/363 (58%), Gaps = 11/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFM AL R G T NP+V +IVKDG+++GRG T GG PH E +AL AG
Sbjct: 19 DADRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHGEPEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+G+SPPCA +I GI+RVV ++DP+ V+G+G L GI
Sbjct: 79 EAARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVAAIEDPNPEVAGQGHARLRAAGI 138
Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + + F H + R ++R H+ LK+AVS D IG AG V ITG +N+V
Sbjct: 139 TVDVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPDGKIGAAGGKPVAITGEAVRNRV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQSDAILVGIGTVLADDP LTCRL G+ SP+R++LD ++S S+++++A
Sbjct: 199 HLLRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVRVVLDQSLRMSAASQLVRSARET 258
Query: 244 PVIIVTE------NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P+ +V + A + + DL +L +L +G++ L+VEGG+
Sbjct: 259 PLWVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDLPAVLHVLAEKGISRLMVEGGSR 318
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
VA SF+ + LVD I L+R +G G+ + PL + + + + F D
Sbjct: 319 VAASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSKITQSQAYKVHASETFDKDTLTI 378
Query: 354 YIG 356
Y
Sbjct: 379 YER 381
>gi|262274779|ref|ZP_06052590.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Grimontia hollisae CIP 101886]
gi|262221342|gb|EEY72656.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Grimontia hollisae CIP 101886]
Length = 373
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 110/366 (30%), Positives = 171/366 (46%), Gaps = 16/366 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD++ M A+ ++ + T+ NP+V C+I + ++G G G PHAEV AL
Sbjct: 2 FSIFDSQMMLRAIELAKRGIYTTAPNPNVGCVITQGDDIVGEGFHFRAGEPHAEVYALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRG+Q +
Sbjct: 62 AGEKACGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVCAMVDPNPKVAGRGIQRMRDA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + L+ + ++ + LK+A S D +A S ITG ++
Sbjct: 122 GIQVDVGLMQAQAEALNPGFIKVMKTGLPFVQLKLASSIDGRTALANGQSQWITGAEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFKLS 231
V + RAQ+ AIL TVL D+P L R + ++ +
Sbjct: 182 DVQVFRAQAGAILSTSQTVLDDNPSLNVRWAQLPETVKSVYQQDDVRQPVRVILDTHRKV 241
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
DS + + +I+ ++D P + + + L + G+ +
Sbjct: 242 SDSATLFSLDGDIIIVTAKDDKPSVNESVTVLTVEQQDGHLNLNSTLRALAAK-GIHHIW 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347
VE GA +A S +N+ LVD +I+Y++ ++G L F G
Sbjct: 301 VEAGATLAGSLLNAGLVDEVIVYQAPKLMGSDSRGLVKLEGLTSMSQVPTFTLTDVTRIG 360
Query: 348 SDVCLE 353
DV
Sbjct: 361 DDVRFR 366
>gi|163738649|ref|ZP_02146063.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
BS107]
gi|161387977|gb|EDQ12332.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis
BS107]
Length = 358
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 130/356 (36%), Positives = 184/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
MS AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG+ ARGA
Sbjct: 1 MSLALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDLARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YV+LEPCSH G++PPCAQ +I G+ RVV ++D D RVSG G L GI V +
Sbjct: 61 TVYVSLEPCSHTGKTPPCAQALINAGVARVVAAIEDSDPRVSGHGFAMLRDAGIPVTTGV 120
Query: 131 ESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
S+ + HA + + R +TLK+A S D I A S ITG ++ VH +RA+
Sbjct: 121 CSDAAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT ADDP LT R + P+R+++ H L L ++ ++A PV I
Sbjct: 181 HDAVMVGGGTARADDPSLTVR-DLGVARQPVRVVISRHLDLPLMGQLARSARDIPVWICH 239
Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
L + D +L L G+T + EGG+A+A S +
Sbjct: 240 GAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAASLLA 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD +I + + + IG G+ S L+ F + G+D+ +
Sbjct: 300 QDLVDELIGFTAGLGIGGDGLSSIGSLGLDALAEAPRFDLIDVRPVGADIQHRWTR 355
>gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
Length = 370
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 176/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V +E E + +++R + +K+ S D + S IT
Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AVNTPRQPRRVLIDSALDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A ++ DL +L L R + L VE
Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD +++Y + V+G G PL+ F G D+
Sbjct: 301 AGFKLNGSLLREGLVDEVLVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 365
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 108/358 (30%), Positives = 165/358 (46%), Gaps = 8/358 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D MS AL+ + T+ NP V C+IVKDG+V+G G G PHAEV AL+
Sbjct: 2 FTIEDHTHMSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E A GAT YVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ VSGRG+Q L
Sbjct: 62 AKERAIGATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + + + L+ + + + LK+A S D + S IT ++
Sbjct: 122 GIEVDVGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQ 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQS AIL TV+ D+ LT R + L + + + +
Sbjct: 182 DVQAFRAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYP-EKALRQPPRVILDRKQT 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVTSLLVEGGAAVA 299
L + ++ + +A ++ + + + + + + + L VE GA ++
Sbjct: 241 LTSDLRFFQSQSESIIIAPSNEHFDELDWSKQLELLPIFKTLAKTYSINHLWVEAGATLS 300
Query: 300 HSFINSRLVDSIILYRSQIVIGE----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
S I LVD +ILY + ++G L + G D+ +
Sbjct: 301 RSLIREGLVDELILYIAPKLMGNDGRGLLGDLGLTSLEQAIDLDIKEVRMVGKDLRII 358
>gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP3-BS71]
gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae
SP3-BS71]
Length = 360
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 113/363 (31%), Positives = 177/363 (48%), Gaps = 13/363 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + GA
Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKSPVGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V +
Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + ++ + ++ +K A+S D I S IT ++ VH LR
Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHY 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG+ TV+ DDP LTCRL +P+RII D H + L SKI+KTA I T
Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINS 305
++D ++ I+ + L+ L + SL++EGG+ + S +
Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKNLC 360
++VD + +Y + + G P+ + G+D +E C
Sbjct: 299 QIVDELKIYIAPKIFGGSA-KFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEVIYPC 357
Query: 361 LQE 363
QE
Sbjct: 358 SQE 360
>gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacillus flagellatus KT]
gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacillus flagellatus KT]
Length = 377
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 129/362 (35%), Positives = 184/362 (50%), Gaps = 10/362 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+ D +M+ ALR + + TS NP V C+IVKDG V+GRG G PHAEV AL
Sbjct: 11 EFSASDHHYMNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALR 70
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG +A GA AYVTLEPCSH+GR+PPCA +++ G+RRVV + DP+ VSG GL+ LS
Sbjct: 71 MAGGQAAGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLST 130
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +E E + +++R +R + KIA S D G+ S ITG ++
Sbjct: 131 HGIEVAYGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSAR 190
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKI 236
V RAQS AIL G+GTVLADDP LT R P R+I+D + +
Sbjct: 191 QHVQQWRAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAAT 250
Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + + + L A + DL+ LL L R + ++VE G
Sbjct: 251 LQAGRVLIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVEAG 310
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
A + S + LVD ++LY + +++G G L+E + + G+D
Sbjct: 311 ARLNGSLLYGGLVDELLLYYAPVLLGGGARDMFTMPALQEMQQKIQLHALDFRQVGADWF 370
Query: 352 LE 353
+
Sbjct: 371 VR 372
>gi|260434096|ref|ZP_05788067.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417924|gb|EEX11183.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis
ITI-1157]
Length = 366
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D R+M+ AL R G+ NP+V C++VK+G ++GRG T GG PHAE AL +
Sbjct: 1 MTDTDKRYMALALSLGRRGQGMCWPNPAVGCVVVKNGRIVGRGWTQPGGRPHAETVALAQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG+TAYV+LEPC+H+G++PPCAQ +I+ G+ RVV ++D D RV+G G + L
Sbjct: 61 AGLLARGSTAYVSLEPCAHHGKTPPCAQALIDAGVARVVSAIEDSDPRVAGLGFEMLRAA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + + +LTR + R +TLK+A S D I + S IT S+
Sbjct: 121 GVDVTTGVLADQAARDHAGFLTRTEQGRPFVTLKLACSFDGRIATSTGQSKWITSPQSRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +RA+ DA++VG GT ADDP LT R + P+R+++ H + L ++ ++A
Sbjct: 181 VVHAMRARHDAVMVGAGTARADDPSLTVR-DLGVAQQPVRVVVSRHLDVPLLGQLARSAS 239
Query: 242 LAPVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PV + + + D LL L G+T + EGG+
Sbjct: 240 EVPVWLCHGPSPDPERARAWRGLGAKLIPCALQDHHIDPADLLQQLGQEGLTRVFCEGGS 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
A+A S + + LVD ++ + + + IG G+P+ L E F V G DV
Sbjct: 300 ALAASLLAADLVDELVGFTAGMAIGAEGLPAIGAMGLSELADAPRFDLVETKIVGPDVLQ 359
Query: 353 EYIGK 357
+
Sbjct: 360 VWRRP 364
>gi|148654182|ref|YP_001281275.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. PRwf-1]
gi|148573266|gb|ABQ95325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychrobacter sp. PRwf-1]
Length = 368
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 174/359 (48%), Gaps = 22/359 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P D +M+ A+ ++ + T NP+V C+IV + +++G G G PHAEV AL
Sbjct: 25 PPKKQDIYYMNLAIEEAKKGLFTTRPNPAVGCVIVNNNLIVGTGYHPQAGQPHAEVFALR 84
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EA + A+GATAYVTLEPCSH GR+PPCAQ +I G+ RVVV DP+ +V+GRG+ L
Sbjct: 85 EAKDNAKGATAYVTLEPCSHTGRTPPCAQALINSGVSRVVVAGLDPNPKVAGRGIAMLKA 144
Query: 122 KGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + ++ L+ +L + ++ LKIA S D MA S ITG ++
Sbjct: 145 AGIEVTVGVSTQQAEQLNLGFLKAMRTQMPYVRLKIASSLDGRTAMASGESKWITGPAAR 204
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V LRA S AI+ G T++ D+P L R + L
Sbjct: 205 EDVQKLRALSGAIITGSQTIIDDNPSLNVRSSQLGVALDKV------------------P 246
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
V++ + +++ + L ++ V +LVE G+ V+
Sbjct: 247 QPKIVVLDRRQRLDQAHYKVFESPDTLLWAEHDLTALLHQLVTQYQVQDVLVEAGSQVSG 306
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
SFI + LVD +I+Y++ ++G P ++ +L+ F V GSD+ L Y
Sbjct: 307 SFIEAGLVDELIVYQAPCLLGHSAKPMLNLTVDNLFLQHRFERVSVSEVGSDLKLVYKP 365
>gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [marine bacterium HP15]
Length = 371
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 127/368 (34%), Positives = 181/368 (49%), Gaps = 15/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D M+ A++ + T NP V C+I + +V+G G G HAE +AL +AG
Sbjct: 4 NRDRAMMARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ V DP+ VSGRGL L + GI
Sbjct: 64 PDARGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREAGI 123
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + +E L+ +++ R + LK+A S D MA S ITG ++ V
Sbjct: 124 RVTEGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARRDV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLDSK 235
LRA SDAIL G+GTVLADDP LT R P+R+I D + +K
Sbjct: 184 QRLRAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSSAK 243
Query: 236 IIKTALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
I++ + + + DL +LL L G+ LLV
Sbjct: 244 ILQGGNVQVFCASSTLATAPAQDLAALGISLTGVAWKDNGIDLAELLDSLGELGINELLV 303
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSD 349
E G +A +FIN LVD + LY++ + +G G P+ PLE + + + R G D
Sbjct: 304 EAGPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGED 363
Query: 350 VCLEYIGK 357
L +
Sbjct: 364 QRLILTRR 371
>gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
Length = 371
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 127/369 (34%), Positives = 183/369 (49%), Gaps = 15/369 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D FM+ A++ + T NP V C+I + V+G G G HAE +AL +
Sbjct: 2 IDAQDTAFMARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +ARGATAYVTLEPCSH+GR+PPCA+ +IE GI V DP+ VSGRGL L +
Sbjct: 62 AGPDARGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + +E + L+ +++ R ++ LK+A S D MA S ITG S+
Sbjct: 122 GIRVTEGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRR 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLD 233
V LRA SDA+L G+GTVLAD+P LT R P+R+I D +
Sbjct: 182 DVQRLRAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPG 241
Query: 234 SKIIKTALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ I++ + + D+++LL L G+ L
Sbjct: 242 ATILQGGNVQVYCASPTLATAPAQDLAALGVGLTGVAWKDNGIDVRELLDSLGELGINEL 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
LVE G +A +FI+ RLVD + LY++ + +G G P+ PLE + + + R G
Sbjct: 302 LVEAGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWKVLDRRQLG 361
Query: 348 SDVCLEYIG 356
D L
Sbjct: 362 EDQRLILAP 370
>gi|56475984|ref|YP_157573.1| riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [Aromatoleum aromaticum EbN1]
gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [Aromatoleum aromaticum EbN1]
Length = 366
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 112/358 (31%), Positives = 175/358 (48%), Gaps = 7/358 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D M+ AL+ + + T+ NP V C+++K+G ++G G G PHAEV AL
Sbjct: 1 MTYSEADHVAMARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG+ ARGATAYVTLEPC+H+GR+PPCA +I G+ RVV ++DP+ V+G G+ L
Sbjct: 61 RAAGDTARGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLR 120
Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V + + L+ +++R R + LK A + D + S IT +
Sbjct: 121 AAGLAVTTGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-IIK 238
+ H RA++ A+L GIGTV DDP+LT R E P+R+++D + L +K +
Sbjct: 181 RRDGHRWRARACAVLTGIGTVREDDPQLTVRAVP-CERQPLRVLVDARLDIPLSAKLLQG 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
L I LA + + DL L+ L RG+ + VE G +
Sbjct: 240 GGCLIATAIEDCEKSAALAALGAEVVVLPNGRGKVDLPSLMRELGDRGINEVHVEAGLKL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
S + VD ++LY + +++G+ L + + G D+ +
Sbjct: 300 NGSLLRENCVDELLLYVAPMLVGDAAQGLFNLPELVQLDRAIRLQWRDVRFIGGDLRV 357
>gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9215]
gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9215]
Length = 364
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ + TS NP V +I+ K+G +I G G PHAE A +
Sbjct: 8 HKKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKK 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ARG YV LEPC H+GR+PPC +I GI+R + ++DPDVRV+G+G++ L + GI
Sbjct: 68 DARGGAIYVNLEPCCHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQ 127
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ + + + K A+S D I + S IT S+ VH
Sbjct: 128 VHLGLCKKESLDLNKAFIYRNTTKKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA+ DAI++G T+ D+P LT R E P+R++ L S +
Sbjct: 188 SFRAEFDAIIIGGNTLRRDNPLLTTRGLKNPE--PLRVVFTKSLDLPTKSNLWDCNKAKT 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++I + L K++ + + + + IL RG ++L E G +A + I
Sbjct: 246 LVIYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRGCNNVLWECGPRLATAAIK 305
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGKN 358
+ + II + + ++G +PL + + ++ G D+C++ + KN
Sbjct: 306 TNCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKSQLSLIGDDICVKSLFKN 364
>gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
HL-EbGR7]
gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp.
HL-EbGR7]
Length = 369
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 123/368 (33%), Positives = 186/368 (50%), Gaps = 13/368 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D R M+ AL+ +R + T NP V C++V+DG V+G G G PHAE+ AL
Sbjct: 1 MT-TETDTRHMARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARGAT YVTLEPC+H+GR+PPCA +I G+ RVV + DP+ RV+G+GL L+
Sbjct: 60 RQAGEAARGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLT 119
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI + E+E + +++R + R ++ +K+A+S D MA S ITG +
Sbjct: 120 AAGITTASGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL------QEHSPMRIILDPHFKLSLD 233
+ V LRA++ AIL G GTVLAD+P L RL+ P+R++LD + +
Sbjct: 180 RRDVQRLRARAGAILTGSGTVLADNPGLDVRLSAQELGIEGPVRQPLRVVLDTRLACTPE 239
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+K+ T A V+ ++ L + DL +L +L RG+ L
Sbjct: 240 AKLFTTGGPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINELH 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGS 348
VE G + S + + LVD +++Y + ++G LE G
Sbjct: 300 VEAGPILCGSLMQAGLVDELVIYMAPHLMGNDARGLLNLGLEHMDERVPLRIEDIRAVGG 359
Query: 349 DVCLEYIG 356
D +
Sbjct: 360 DWRIVARP 367
>gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas haloplanktis ANT/505]
Length = 377
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 111/364 (30%), Positives = 172/364 (47%), Gaps = 12/364 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ D +M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL
Sbjct: 6 TFTEHDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNALA 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG+ A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS
Sbjct: 66 VAGKNAQGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSD 125
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V +ES+ + + R + ++ K+A S D + S IT ++
Sbjct: 126 AGIDVAYGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAAR 185
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V L RA+S AIL G TVL DD +L RL+ L P + L ++ +DS+ T
Sbjct: 186 QDVQLYRAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTP 245
Query: 241 LLA-------PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
LA +I T+ D + F K DL+ +L L ++ +E
Sbjct: 246 DLALFEIQSDVIIFTTKVDKSLQWPHFVKHIEVSESNGKVDLQAVLEKLGQLQFNNVWLE 305
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
GA +A LVD + Y + ++G L + G D
Sbjct: 306 AGATLAGKMTELNLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDD 365
Query: 350 VCLE 353
+ +
Sbjct: 366 LRIT 369
>gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 371
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 116/363 (31%), Positives = 178/363 (49%), Gaps = 14/363 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M AL +R G TS NP V ++V G V+G+G G PHAEV AL AG+
Sbjct: 4 DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGRVVGQGAHLMAGTPHAEVHALRMAGDA 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L + GI V
Sbjct: 64 AQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGIEV 123
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E+E + + R R ++ K+A++ + + S +TG ++ VH
Sbjct: 124 TVGVLEAEARELNRHFFHRVTTGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHW 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
LR AI VG+GTVL DDPELT R ++ P+R++ D + ++++
Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDRQPLRVVFDTRLRTPPTARLLAAPGR 243
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAA 297
++ A ++ I L + + G +LLVEGG
Sbjct: 244 TLLLTSERMASAPAARRLAEQGDVRIAPVAERDGHLDLHAALSAIAAEGANALLVEGGPT 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLE 353
+A + + SRL+D I +Y + ++ GG+P+ VR D+ G D+ +
Sbjct: 304 LASALLKSRLIDEIRVYLAPKLL-AGGLPAFAGAFTQGMAEAVELHGVRSDWVGDDLVVT 362
Query: 354 YIG 356
Sbjct: 363 GRV 365
>gi|126696788|ref|YP_001091674.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9301]
gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9301]
Length = 364
Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 105/368 (28%), Positives = 177/368 (48%), Gaps = 14/368 (3%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQ 58
M S ++M A+ + TS NP V +I+ K+G +I G G PHAE
Sbjct: 1 MSEKSLSHTKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAM 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A +A+G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++
Sbjct: 61 AFNNLKNDAKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKL 120
Query: 119 LSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + GI V+ + + + L+ ++ R K++ LK A+S D I + S IT
Sbjct: 121 LKEAGIQVNLGLCKKESLDLNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITND 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S++ VH RA+ DAI++G T+ D+P LT R + E P+R++ L S +
Sbjct: 181 ESRSLVHSFRAEFDAIIIGGNTLRRDNPFLTTRGSKNPE--PLRVVFTKSLDLPSKSNLW 238
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ ++I + L+ K + + + + + IL RG +L E G
Sbjct: 239 DCSKAKTLVIYDSSTANESYLSRIPKCVEVEKVLSDNPELISKILAKRGCNKVLWECGPN 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
+A + I S + II + + ++G P + E+ ++ G+D+C+
Sbjct: 299 LATAAIQSNCIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLSNSQVSLIGNDICV 358
Query: 353 EYIGKNLC 360
K+LC
Sbjct: 359 ----KSLC 362
>gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Deep ecotype']
gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Deep ecotype']
Length = 379
Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 105/367 (28%), Positives = 168/367 (45%), Gaps = 14/367 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
D +M+ A++ + TS NP V C+IV D ++G+G G PHAEV AL +A
Sbjct: 7 KNDYYWMAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQA 66
Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
E A+GATAYVTLEPCSH+GR+PPCA+ ++E + RVV+ + DP+ V G G+ L
Sbjct: 67 AHARSEGAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISML 126
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + + L+ +++ + + +K+ +S D I + S IT
Sbjct: 127 QEAGIEVVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPE 186
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS +L G GTV AD+P L R Q + ++ +DSK
Sbjct: 187 ARRDVQHYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTL 246
Query: 239 TALLAPV----IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ A + T A + DL L+ L + + VE
Sbjct: 247 SRDFALFNDGNMTFTATSQAHPDTASQHYLQLDEKDGKLDLHALMLALGDKQFNEVWVEA 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
G +A + + LVD +I Y++ ++G+ G+ + + G+D+
Sbjct: 307 GPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTALNQSISLSLIENRQVGNDI 366
Query: 351 CLEYIGK 357
L +
Sbjct: 367 KLIFRPD 373
>gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
NOR51-B]
gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
NOR51-B]
Length = 371
Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 122/367 (33%), Positives = 178/367 (48%), Gaps = 14/367 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+S D +M+ AL + + NP V C++V +G VIG G T G HAE++ALE A
Sbjct: 3 TSADEIYMARALALAGEARFWATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ GATAYVTLEPC+H GR+ PCA +I+ G+ RVVV V DP V GRG+ L G
Sbjct: 63 TADPSGATAYVTLEPCAHTGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAG 122
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + L A R + LK+A S D MA S ITG +++
Sbjct: 123 IEVSVGVLAVQASDLMAGFLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLSL 232
V LRA+S AI+ GIGTVLADD LT R P+R++LD +
Sbjct: 183 VQRLRAESCAIVTGIGTVLADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPG 242
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
D++I T +I + D P A + + DL +L L RG+ +L+
Sbjct: 243 DARITSTGAPTLIITAPDVDAPDYAGEVEVASNATGHDGRLDLSAVLMQLGARGINEVLL 302
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349
E G +A +F+ + LVD ++LY++ ++G+ P ++ G+D
Sbjct: 303 EVGPTLAAAFLKAGLVDEVVLYQAPKLLGDTARPLAALSIDRLAEAVALEYQDVTPVGND 362
Query: 350 VCLEYIG 356
+ +
Sbjct: 363 LRITARV 369
>gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115]
gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti
VCD115]
Length = 368
Score = 214 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 175/361 (48%), Gaps = 17/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + +G TS NP V C+IV+DG V+GRG G PHAEV AL EAGE
Sbjct: 8 DTEYMRLALNEAARGMGRTSPNPPVGCVIVRDGQVVGRGFHPRAGEPHAEVFALREAGEY 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+GR+PPCA ++ G+ +VV+ DP+ RV G+G L + GI V
Sbjct: 68 ARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIEV 127
Query: 127 DRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGM-----AGCGSVPITGFISK 180
+ E + A + R + K A++ D + G + +TG S+
Sbjct: 128 IVGVAEEEALRQQAGFRSLVMRARPWVIYKYAMTLDGKVAALDASGRGEANGLVTGLASR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R + D I VG GTV+ DDP LT R P ++ D + S +++I+
Sbjct: 188 ARVMAWRNEVDGIAVGSGTVITDDPLLTTRGVE-GGRDPRPVVFDGQGRTSASARVIRPG 246
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + A A + L L ++L VEGG +A
Sbjct: 247 AVVVTAPGMDMSRHEAAGAQVIY--------ATQPSEALAELGRLNFSTLFVEGGPTLAG 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
S +++ LVD + + + ++G G P +P+ + + V + G D+ + + +
Sbjct: 299 SLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVRPMHEAQVLRDVTFESLGPDLLIRGLLND 358
Query: 359 L 359
+
Sbjct: 359 I 359
>gi|296269350|ref|YP_003651982.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
43833]
gi|296092137|gb|ADG88089.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM
43833]
Length = 362
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 120/359 (33%), Positives = 175/359 (48%), Gaps = 8/359 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
++S D +M A+ + G TS NP V C++V G ++G G AY G PHAE+ AL
Sbjct: 1 MTSRDDHYMRRAIELAARGHGGTSPNPVVGCVVVDPTGEIVGEGFHAYAGGPHAEIVALR 60
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ARGATAYVTLEPC H GR+ PC +++ G+ RVVV V DP+ V+ G + L +
Sbjct: 61 QAGERARGATAYVTLEPCDHTGRTGPCTAALLQAGVARVVVAVPDPNP-VAAGGAETLLR 119
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ VD + + ++ T +R +T K A + D A S IT ++
Sbjct: 120 HGVTVDVGVLAAEAERVNEEWLTYMRARRPFVTWKFAATIDGRSAAADGTSKWITSPEAR 179
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH LRA SDAI+ GIGTVLADDP LT R + P+ ++ + +
Sbjct: 180 ADVHRLRAASDAIVAGIGTVLADDPRLTVRTPEPRRTRPVLRVVVDSGARTPAGARVLDG 239
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++ V ++ DP L DL+ LL L R V S+L+EGG +A
Sbjct: 240 EAPTLVAVADDADPPPHLG--DAVRLPRADGGLDLRALLAELHRRQVVSVLLEGGPTLAG 297
Query: 301 SFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
SF+ LVD ++ Y + ++G G P+ + G D+ +
Sbjct: 298 SFLREGLVDRVVGYLAPALLGAGSAALGPAGVTTIAERHRLEFEEVTRIGPDLKVVLRP 356
>gi|126733197|ref|ZP_01748944.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
gi|126716063|gb|EBA12927.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2]
Length = 369
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 9/360 (2%)
Query: 3 VSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ DARFM+ AL R +G NP+V C+IV D ++GRG TA GG PHAE AL
Sbjct: 1 MTPQADARFMALALMLGRRGMGRVWPNPAVGCVIVNDCNIVGRGWTADGGRPHAEAIALA 60
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG A GAT YVTLEPC+H+G++PPC+ +I+ + RVV+ DDPD RV+GRG+ L
Sbjct: 61 QAGSAADGATVYVTLEPCAHHGKTPPCSNALIKANVARVVIAADDPDERVNGRGIAMLRD 120
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ VD + ++ HA +R + R +TLK+A + D I A S ITG ++
Sbjct: 121 AGVQVDCGVGNKAAARDHAGFLSRITQGRPFVTLKLAGTLDGRIATATGESQWITGPEAR 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH++RA+ DA++VG GTV ADDP LT R G H P+R+++ K+ + S++ +TA
Sbjct: 181 RMVHMMRARHDAVMVGAGTVRADDPSLTVRGLG-IVHQPVRVVVSRALKIPVTSQLAQTA 239
Query: 241 LLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
PV + E D + D ++T L +G+T + EGG
Sbjct: 240 RDTPVWLCHGPEADVAGWTAKGAVSLPCATAANQVDPHAIMTTLADQGITRVFCEGGGMF 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A S +N+ LVD ++++ + IG G P +++ F G D+C +
Sbjct: 300 AASLLNAGLVDQLVVFSAGAAIGAEGTPMLAAMGVDQLIGAPRFALESVRPIGGDICHVW 359
>gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
F0264]
gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii
F0264]
Length = 382
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 109/368 (29%), Positives = 186/368 (50%), Gaps = 13/368 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S DA +M AL ++ +G + NP V +IVK+G +IG G G HAEV A+E
Sbjct: 13 NISKEDAEYMKMALELAKKGIGRVNPNPLVGAVIVKNGKIIGEGYHKMFGEAHAEVHAIE 72
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGEE + AT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ V+G+G++ L
Sbjct: 73 NAGEETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKN 132
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + L+ + ++ K ++ LK ++ D I ++ S IT ++
Sbjct: 133 SGIEVTENVLKKECDELNQVFFKYIKSKIPYLFLKCGITLDGKIALSNGESKWITNEKAR 192
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R + I+VGI TVL D+P LT R+ + RII+DP+ +++ D IIK
Sbjct: 193 EKVQYYRNKFMGIMVGINTVLYDNPSLTARIENGVDPF--RIIIDPNLRITEDYNIIKNN 250
Query: 241 LLAPVIIVTENDDPVL-----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+IVT + +K + ++ +L + G+ S+L+EGG
Sbjct: 251 SDGKTVIVTSVINKNSDKVEIFKERKKLKFIFLKGKNFLMRDILEEIGKEGIDSVLLEGG 310
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350
+ + +++D ++ S + G+ S + ++ + + +++
Sbjct: 311 EKLISKAFSEKVIDGGEIFISNKIFGDKTAKSFISGFTKINTDEAITLNNIKYNIYDNNI 370
Query: 351 CLEYIGKN 358
+E+ K
Sbjct: 371 GVEFYFKK 378
>gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8]
gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Marinobacter aquaeolei VT8]
Length = 363
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 127/362 (35%), Positives = 182/362 (50%), Gaps = 15/362 (4%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+ A++ + T NP V C+I K +++G G G HAEV+AL +AG EARG
Sbjct: 1 MMARAVQLAWRGRYSTHPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQAGHEARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATAYVTLEPCSHYGR+PPCA+ +I+ G+ V DP+ VSGRGL L + GI V
Sbjct: 61 ATAYVTLEPCSHYGRTPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVTEG 120
Query: 130 MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++ L+ +++ R + LK+A S D MA S ITG ++ V LRA
Sbjct: 121 VMADEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTA 240
SDAIL G+GTVLADDP LT R + + P+R+I D + ++I++
Sbjct: 181 ISDAILTGVGTVLADDPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQGG 240
Query: 241 LLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + LA + D+ +LL L G+ LLVE G
Sbjct: 241 NVQVFCASSTLASGPAQDLAALGVSLTGVAWKDNGVDVAELLDALGELGINELLVEAGPT 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A +FI LVD + LY++ + +G G P+ PLE + + + R G D L
Sbjct: 301 LAGTFIGENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQRLIL 360
Query: 355 IG 356
Sbjct: 361 AR 362
>gi|212696303|ref|ZP_03304431.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
7454]
gi|212676932|gb|EEB36539.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM
7454]
Length = 359
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 156/353 (44%), Gaps = 10/353 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M ++ G T NP V ++VKDG +I G G HAEV E
Sbjct: 3 DKYYMKKCFDLAKKARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI V
Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+E EGK + R I LK A + D I S I+ S+ VH
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR DAI+VG T++ D+P L R+ P+R+I+D + ++ + K K L
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIEE--GVDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + DL+ L+ L + S+LVEGG+ + + F+
Sbjct: 239 KKTYIATCKDTDNPDLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDFLEE 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
LVD I + S +IG SP ++K F F D+ +E
Sbjct: 299 GLVDKIYEFISPKIIGGFNSKSPFYGRGVDKIKDGYKFEIEDIKRFDDDIMIE 351
>gi|313904567|ref|ZP_07837942.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
gi|313470537|gb|EFR65864.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6]
Length = 367
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 113/360 (31%), Positives = 168/360 (46%), Gaps = 19/360 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ +R G NP V +IV+DG +IG G G HAE A + E A GA
Sbjct: 1 MRRAIELARQGEGWCHPNPMVGAVIVRDGKIIGEGYHRKCGELHAERNAFQSLRESAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC H GR+PPC + II IR+VV+ DP+ +V G+G + L + GI V
Sbjct: 61 VLYVTLEPCCHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGIEVVEDF 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + ++R ++ LK A++ D I S ITG ++ +V +R
Sbjct: 121 LREECDALNDVFFHYITKRRPYVKLKYAMTADGKIATRTGASKWITGEEAREEVQRMRHA 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
I+VG GTV DDP L CRL G P+RII D + +S+I+++A IIV
Sbjct: 181 CMGIMVGSGTVRKDDPMLNCRLPG--GRDPVRIICDSKLSIGENSQIMRSAEQQRTIIVA 238
Query: 250 ENDDPVLALAFRK----------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
D R+ N+ + DL L+ L + S+L+EGG +A
Sbjct: 239 ACRDVDAGFESRREILEKAGAEVWNLPKQAGEGVDLNLLMEKLGEIEIDSVLLEGGGILA 298
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
S + + +V + ++ + + G G SP+E ++ FG D+ + Y
Sbjct: 299 DSALRAGIVSEVDVFTAPKIFGGRG-KSPVEGEGVDLPSEAVMLTPKEVKMFGPDLFVRY 357
>gi|258546002|ref|ZP_05706236.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
15826]
gi|258518731|gb|EEV87590.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC
15826]
Length = 369
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 179/368 (48%), Gaps = 7/368 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D +M AAL +R + T+ NP V C+IVK G +G+G G PHAE AL
Sbjct: 1 MTTAAQDIPWMQAALELARQGIFSTAPNPRVGCVIVKGGEAVGKGFHVRAGEPHAEAHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG ARGATAYV LEPC+H GR+PPCA +I G+ RVVV DP+ V+G+G+ L
Sbjct: 61 REAGAAARGATAYVNLEPCAHQGRTPPCADALIAAGVARVVVACRDPNPLVAGQGIARLQ 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + E L++ R++ R +T+K+A S D +A S IT +
Sbjct: 121 AAGIDVTEGVCEEEAQALNSGFFRRITTGRPFVTVKLAASLDGKTALANGESQWITSEAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIK 238
+ VH R +DAI+ G G+++ D+ LT R P+R+I+D + D+ +
Sbjct: 181 RADVHYHRLAADAIIAGTGSIIRDNARLTARYPTELPNQPPLRVIIDSRLRTPRDAAVFD 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ + P A + + L LL L RGV + VE GA++
Sbjct: 241 DPSPILIVCGMDARAPN-YPAHVEWLRLPLVGGRVPLPALLDELGTRGVNNAFVEAGASL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +F+ L D I+LY + ++G G PL+ G+D+ L
Sbjct: 300 AGAFLEQNLADEILLYLAPCLLGSGARELVQLPPLQRLSDRMRARIDDCTPIGADLRLRL 359
Query: 355 IGKNLCLQ 362
+ C Q
Sbjct: 360 TPETPCSQ 367
>gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335]
Length = 363
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 103/354 (29%), Positives = 164/354 (46%), Gaps = 7/354 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D M + G T+ NP V +I++DG ++G G G PHAE+ AL A +
Sbjct: 11 DTDLMRRCCELAAQAAGHTAPNPLVGSIILRDGEIVGEGFHPKAGEPHAEIFALRAASDR 70
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YV LEPC+H G +PPC++ +I+ GIRRVV+ + DP+ + G + +V
Sbjct: 71 AQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPKAKGGIEKLRQAGIEVV 130
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ A++ R LK A++ D I S I+G S+ +VH L
Sbjct: 131 VGIEVDRCHQLNEAFIHRVTHNSPFGILKYAMTLDGKIATTAGHSAWISGPSSRQRVHQL 190
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R++ DA++VG TV D+P LT +G +P+R+++ H L D + KT + ++
Sbjct: 191 RSRCDAVIVGGNTVRQDNPNLTS--HGEGTRNPLRVVMSRHLDLPSDRNLWKTEVAPTLV 248
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N + A ++ + I+ + ++ L RG S+L E G +A I +
Sbjct: 249 FTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQRGAMSVLWECGGVLAAKAIAAG 308
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
V I + + +IG PSP+ E V G D L+
Sbjct: 309 SVQKIWAFIAPKLIGGQRAPSPIGELGFTAMTEALALHSVSITPVGQDFLLKGY 362
>gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
Length = 361
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 122/362 (33%), Positives = 176/362 (48%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL A E+A+GA
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R ++ LK+ S D MA S IT ++ V LRAQ
Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ + +I++
Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHRIVQ 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+D + + Y DL L+ L + + S+ VE G +
Sbjct: 241 QPGE--TWFARTQEDSRHWPETVRTLLIPEYNGHLDLVMLMMQLGKQQINSIWVEAGPTL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 299 AGALLLAGLVDELIVYIAPKLLGSEARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358
Query: 355 IG 356
+G
Sbjct: 359 VG 360
>gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Candidatus Blochmannia floridanus]
gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Candidatus Blochmannia floridanus]
Length = 378
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 117/371 (31%), Positives = 175/371 (47%), Gaps = 19/371 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++S A R +R T NP+V C+IVK+ VIG G G HAE+ AL AG
Sbjct: 8 DNDLIYLSRAFRLARKGRFTTMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIAG 67
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ ARGAT YVTLEPCSHYGR+PPC +I GI+ VV+ + DPD + GRG++ L + GI
Sbjct: 68 DSARGATVYVTLEPCSHYGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGI 127
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V M SE + ++ R I +K+A S D M S IT S+ V
Sbjct: 128 LVRHSLMLSEAEHINKGFIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDV 187
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSL 232
RA+SD IL T+L D+P L R P+R+I+D ++
Sbjct: 188 QCFRAESDVILSTATTILIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLP 247
Query: 233 DSKIIKTALLAPVIIV--TENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTS 289
+ I+ + ++ + + P IN++ +L+ L+ L R + +
Sbjct: 248 THRFIQNSGKVILVRLKKDNLNWPESVEQLLAPEINLVGSYQINLEALMKYLGYVRKINN 307
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
+ VE G ++ S ++ LVD +ILY+S +G P ++ K F +
Sbjct: 308 VWVEAGPTLSGSLLDIGLVDELILYQSIKFLGSNAKPLCFLPNIDNLKDVKTFKLLNIKN 367
Query: 346 FGSDVCLEYIG 356
G D+ L
Sbjct: 368 IGPDIRLTLKP 378
>gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum PSI07]
gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum PSI07]
Length = 370
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 176/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA ++E G+ RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILVDSGLDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
AP +I + A K DL +L L R + L VE
Sbjct: 241 ADDHHAPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDISRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|110636628|ref|YP_676835.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cytophaga hutchinsonii ATCC 33406]
gi|110279309|gb|ABG57495.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cytophaga hutchinsonii ATCC 33406]
Length = 352
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 18/356 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D R+M AL + G S+NP V C++VKDG +IG G G PHAEV A++
Sbjct: 2 DSDERYMRRALELAMLGSGHVSSNPMVGCVVVKDGHIIGEGYHEKFGQPHAEVHAIQSVP 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ G+T YV LEPCSHYG++PPC+ I++ I RVV DP+ V+G G ++L
Sbjct: 62 DKSLLEGSTLYVNLEPCSHYGKTPPCSHLIVDYKIARVVFANIDPNPLVAGAGFEYLMSN 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + E EG+ + T KR +I LK A + D I S I+ +S+
Sbjct: 122 GIEVIQGVLEEEGRELNRRFFTYIENKRPYIILKWAETADGFIAKENFDSKWISNELSRK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R + D +L+G T L D+P L R +P+R +D ++ + + ++ +
Sbjct: 182 LVHKWRTEEDVVLIGTNTALYDNPRLNVRDWT--GRNPVRAFIDKQLQVPVGAHLLDGSQ 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
E D L + + + + R S+LVEGG + S
Sbjct: 240 ETICYNYHEQDVRNLVE------YVKVDPLDDMIDVIAEDMYVRKHLSILVEGGTQLLKS 293
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
F+ L D I ++RS G GI SP+ ++ D + Y K
Sbjct: 294 FLKKGLWDEIRIFRSPNEFGA-GIESPI------VRAKAFSQEMILDDTLIVYRNK 342
>gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
DSM 14796]
gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense
DSM 14796]
Length = 372
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 102/360 (28%), Positives = 164/360 (45%), Gaps = 9/360 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
FM AL + TS NP V C++VKD +I +G G PHAE AL+
Sbjct: 12 LHESFMKKALDLALNGKYYTSPNPMVGCIVVKDKKIISQGYHRAYGEPHAEANALKPKYI 71
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GA YVTLEPC HYG++P C II GI+RV + DP+ +++G+ ++ L GI
Sbjct: 72 DFSGADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIE 131
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + + + + K A++ D S I+ S+ VH
Sbjct: 132 VYTGILEKEARFINRHFFKAMEKSMPWLIYKCAMTLDGKTADHNFKSKYISSVKSRKYVH 191
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRA+ DAI+VG T + DDP L RL G+Q+ R+I+DP L D + T
Sbjct: 192 ELRAECDAIIVGYRTAIFDDPLLNIRLKGVQKKVN-RVIIDPKAALPKDLMVFNTPNEGH 250
Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I+V + + + L+ L + + +L+EGG ++A
Sbjct: 251 TILVIQKGFRNKVTDQIESQGVEVLEVEEKNFYVDLMKELFKKNLIKILLEGGGSLACHM 310
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+ +RL+D + + + ++G P+P E + ++ G+D+ + + K
Sbjct: 311 LKNRLIDELNFFIAPKILGGKNSPTPFSGAGFEIDQNTVVLDSLKTKKIGTDILITSLVK 370
>gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|46396884|sp|Q89AB0|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 372
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 105/370 (28%), Positives = 185/370 (50%), Gaps = 20/370 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ TS NP+V C+IV + I++G G G HAE+ AL+ +GE+
Sbjct: 3 DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAY+TLEPCSH+G++PPC + + GI RVV+ DP+ +VSG G++WL + GI+V
Sbjct: 63 AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
S+ I ++ +++ I LK+A S D + S IT +++ V
Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182
Query: 186 LRAQSDAILVGIGTVLADDP-------------ELTCRLNGLQEHSPMRIILDPHFKLSL 232
+R +SDAI+ T+L D+P + + + P+R+I+D +++
Sbjct: 183 VREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITP 242
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
K IK L +I + +++ + K+ I DL L+ +L + ++L+
Sbjct: 243 SHKCIKQPGLLFLIRIHSDNNI--WPSHIKQIILNNKSKKIDLIDLVKMLAKYQINNILI 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGS 348
E G +++ SF+ +++ +I+Y + ++G P F + G
Sbjct: 301 EAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENYSNLSDVPQFKFEKITQIGK 360
Query: 349 DVCLEYIGKN 358
D+ L N
Sbjct: 361 DLKLILTKHN 370
>gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CB0101]
Length = 359
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 114/354 (32%), Positives = 180/354 (50%), Gaps = 9/354 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G TS NP V C+++ + G ++G G G PHAEV AL +AGE AR
Sbjct: 8 WMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALRQAGERAR 67
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127
G TA VTLEPC H+GR+PPC++ ++ G+ RVVV + DPD RV+G+GL L G+ V +
Sbjct: 68 GGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRDAGVDVLE 127
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E+E +I +L R + R LK A+S D + S I+G ++ VH LR
Sbjct: 128 GVCEAEARILNRGFLHRVEQGRPLGLLKWAMSLDGRTALPNGSSQWISGPPARAWVHHLR 187
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
AQ DA++VG GTV AD+P LT R G + P+R+++ L +++ + A +++
Sbjct: 188 AQCDAVIVGGGTVRADNPLLTSR--GQRTPEPLRVVISRSLDLPKQAQLWNQSEAATLVV 245
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + + + + + +LL L RG +L E G +A + +
Sbjct: 246 HSSSAPAEQLDRLDGLGVERLVLERCEPLELLEALGQRGCNQVLWECGPELAAAALRQGC 305
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
V + + ++G +PL + L + R G+D LE
Sbjct: 306 VQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSRLQQLGNDCLLELSP 359
>gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
Length = 376
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 10/366 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D ++M+ ALR ++ + T NP V C+IV++G ++G G G PHAE+ AL
Sbjct: 10 FTAADRQYMAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAA 69
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGA YVTLEPC H+GR+PPC ++ GI RV+ DP+ RV+G+GL+ L+
Sbjct: 70 AGQAARGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAA 129
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E L+ +++ ++ K+A+S D MA S IT ++
Sbjct: 130 GITTRHGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARG 189
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH LRA+SD +L G GTVLADDP+LT R P R++LD ++ +++++
Sbjct: 190 DVHRLRARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQE 249
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
V+ + L + I D +L L G + LLVE G
Sbjct: 250 PGKVAVLYAHHDRRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGP 309
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
++ + + + L+D +++Y + ++G+ P L G D+ L
Sbjct: 310 TLSGALLQADLIDELVVYIAPHLMGDEARPLLRLPGLVRMAERIPITITDMRALGPDLRL 369
Query: 353 EYIGKN 358
+
Sbjct: 370 TARLEK 375
>gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
MLS10]
gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens
MLS10]
Length = 361
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 123/359 (34%), Positives = 177/359 (49%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ + G TS NP V C+IVK + G G G HAE QAL A EE
Sbjct: 3 DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHNQIKGIGAHLKAGEWHAERQALHMAKEE 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPCSH+G++PPC+ +IE GI RVV DP+ VSGRG++ L GI V
Sbjct: 63 ANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIEV 122
Query: 127 DRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ E + ++ ++TLK A S D I A S I+ S+ VH
Sbjct: 123 VEGVQKERADRMNRWFFHAITKQTPYVTLKFATSLDGKIATATGESQWISNEKSRADVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q D ILVG TV+ D+P LT RL +P+RII+D + DS ++
Sbjct: 183 IRHQVDGILVGRETVVQDNPSLTTRLPA-GGKNPIRIIMDRTLRTPPDSIMLNDGQSPVW 241
Query: 246 IIVTENDDPVL--ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I+ L I I R ++++L +L +G+++LLVEGG + F+
Sbjct: 242 IVTNAGASQERKEMLIASGAEIIEITDKDRFIEEMLEVLGRQGISTLLVEGGGTINDQFL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
L +I Y++ ++IG S + + + ++F DV Y+ K
Sbjct: 302 TRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAPRLLLDQEEWFDDDVKRTYVYK 360
>gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28]
Length = 360
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 124/356 (34%), Positives = 182/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL + G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG
Sbjct: 1 MKLALENANAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEESKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+R+ILD ++ + + ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMKANVVTDEEAPTWIFTT 238
Query: 250 ENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N A K +L ++L +L +GV+SLL+EGG V SFI +
Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 354
>gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1]
Length = 371
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D +M AL + +G TS NP V C++V+DG ++G G G HAEV AL++A
Sbjct: 11 DEYYMRRALSLALRGMGRTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERR 70
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGA YVTLEPC H+GR+PPCAQ ++ G+ RVV DP+ RV+ GL L + G
Sbjct: 71 GETARGAEVYVTLEPCCHFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAG 130
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V E E + ++ Q R +TLK A D + + S ITG ++
Sbjct: 131 VEVSAPCLEEEARRVNKGFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQW 190
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H +RA DAILVG+ TVL DDPELT R + P+R+ILD H + ++ ++ L
Sbjct: 191 AHGMRASHDAILVGVSTVLKDDPELTVRHTEGKS--PLRVILDSHLRTPTSARALRGGCL 248
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I L A + DL+ L L GV +L+VEGG V +
Sbjct: 249 ILTISQEAERARALQAAGARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRVLTAL 308
Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRR--DYFGSDVCLEYIGKNL 359
+ L DS+ L+ + V+GEG G+ + ++F G ++ +E G+
Sbjct: 309 MEGHLADSLSLFVAPRVLGEGIGMGEGFSPASVAESFNLKDVTSRPVGDNLLVE--GRFS 366
Query: 360 CLQEL 364
C +L
Sbjct: 367 CSPDL 371
>gi|119384301|ref|YP_915357.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
PD1222]
gi|119374068|gb|ABL69661.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Paracoccus denitrificans PD1222]
Length = 325
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 120/352 (34%), Positives = 170/352 (48%), Gaps = 32/352 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R +G NP+V C++V+DG+V+GRG T GG PHAE AL +AGE ARGA
Sbjct: 1 MRHALALARRGLGNVWPNPAVGCVLVRDGVVVGRGWTQPGGRPHAEAMALAQAGEAARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
TAYVTLEPC+H+G++PPCA+ ++ G+ RVV + DPD RV+GRG L GI V +
Sbjct: 61 TAYVTLEPCAHHGKTPPCAEALVRSGMARVVTALTDPDPRVTGRGHAILRAAGIEVAEGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + +L+R R +TLK+A S D I A S ITG ++ VH LR
Sbjct: 121 CEAEAREVQRGFLSRIQRGRPMLTLKLAASFDGRIATASGESQWITGAQARRHVHALRLG 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG T AD P L R G ++
Sbjct: 181 HDAVMVGAETARADRPGLNVRGFGPVRQPVRIVVSSRRL--------------------- 219
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
L ++ + + + L RG+T +L EGG +A S + + +VD
Sbjct: 220 ------PDLPGEGPEHGPLWQVAGEPEAFMAELGTRGLTRVLCEGGGVLAASLLRAGMVD 273
Query: 310 SIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+I Y + +V+G G LE F V GSD+ ++
Sbjct: 274 QLIGYGAGVVLGGDGRAGIGALELEHLADAPRFRLVETRRIGSDIMHRWLRD 325
>gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
NEM316]
gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316]
Length = 369
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 12/356 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+
Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++ + V+
Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKECLNVE 124
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E ++ K+ + LK A++ D I S I+ S+ V L
Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P
Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTW 242
Query: 247 IVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I T +D+ ++ DLK L+TIL G+ SLL+EGG+++ S
Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRD--YFGSDVCLE 353
+ + +V+ +I++ + +IG + + L+ ++F + SDV +E
Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQDFRVKDIELSRMDSDVVIE 358
>gi|148255996|ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bradyrhizobium sp. BTAi1]
gi|146408169|gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium
sp. BTAi1]
Length = 383
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 144/364 (39%), Positives = 203/364 (55%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL AG
Sbjct: 19 DADRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+GAT YV+LEPCSH+G+SPPCA +I GI RVV ++DP+ VSG+G L GI
Sbjct: 79 AATKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVSAIEDPNPEVSGQGHARLRAAGI 138
Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + S H + R + R H+ LK+AVS D+ I AG V ITG ++ +V
Sbjct: 139 QVEVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSADDKIAAAGNKPVAITGEAARTRV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L + S+++++A
Sbjct: 199 HLLRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVRVVLDPMLRLPMTSRLVQSARTT 258
Query: 244 PVIIVTENDDPVLAL-------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ ++ A A + + + +L L +G+T L++EGG+
Sbjct: 259 PLWMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLEPPAVLKALADKGITRLMIEGGS 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA SF+ S LVD I L R IG GI + PL + + +D+
Sbjct: 319 RVASSFMQSGLVDEIWLLRGAGEIGADGIAALDALPLTAITQSPAYRVRASETLDTDILT 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|207728168|ref|YP_002256562.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum MolK2]
gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum MolK2]
Length = 370
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 175/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILIDSGLDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A + DL +L L R + L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica ST-640]
gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica 020-06]
Length = 369
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I + G ++G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +ESE + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL +L+ +L G ++VE GA
Sbjct: 241 SPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 KLASAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRTALSAPPLWTPVSTEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|84515381|ref|ZP_01002743.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
SKA53]
gi|84510664|gb|EAQ07119.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis
SKA53]
Length = 359
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 131/357 (36%), Positives = 190/357 (53%), Gaps = 8/357 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DAR+M+ AL+ R +G NP+V C+IV G ++GRG T GG PHAE AL +AG +
Sbjct: 3 DARYMALALQLGRRGMGRVWPNPAVGCVIVNHGRIVGRGWTQDGGRPHAETVALAQAGPD 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPC+H+G++PPCA +I G+ RVVV + DPD RV+GRG+ L Q GI V
Sbjct: 63 ACGATVYVTLEPCAHHGQTPPCAAALIAAGVARVVVALGDPDARVAGRGIALLEQAGIAV 122
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + +L+R R +TLK+A + D I A S ITG ++ VH+
Sbjct: 123 ETGLLADQARADHAGFLSRITAARPFVTLKLAGTLDGRIATASGESQWITGTEARRAVHM 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+RA+ DA+LVG GTV ADDP L+ R G P+RI++ KL L S++ +TA +PV
Sbjct: 183 MRARHDAVLVGAGTVRADDPALSVRGLG-IPRQPVRIVVSRAVKLPLTSQLAQTARQSPV 241
Query: 246 IIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I E D + + + ++ L G+T + EGG +A S +
Sbjct: 242 WICHGAEADVADWLALGAVSLPCAVRAGQVEPEAMMQALASAGITRVFCEGGGMLAASLL 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD +++ + IG G P+ + F G DV +
Sbjct: 302 GAGLVDDLVVMTAGCAIGAEGTPALAAMGIGRLADAPRFALHDLARLGDDVMTHWRR 358
>gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
gardneri ATCC 19865]
gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
gardneri ATCC 19865]
Length = 364
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 124/362 (34%), Positives = 189/362 (52%), Gaps = 8/362 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D R M+ ALR + T NP V C+IV+DG+ +G G G HAEV AL
Sbjct: 1 MSATADDHRCMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L
Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLR 120
Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V +M+++ ++ +L+R R + +K+ S D +A S ITG +
Sbjct: 121 EAGIEVLSGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238
+ V RA++ AIL G GTVLADDP +T RL P+R++LD + +
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLRT--LACENI 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
AP + V +D +L + ++ DL +L L RG+ + VE GA +
Sbjct: 239 RQGNAPTLYVHGDDVLPRSLDVAQFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + +++ LVD +++Y + +++G+ P +E + G D+ L Y
Sbjct: 299 SGALLHAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRHPLQLLDVRQLGQDLRLRY 358
Query: 355 IG 356
+
Sbjct: 359 VP 360
>gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
vesicatoria ATCC 35937]
gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
vesicatoria ATCC 35937]
Length = 364
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 121/362 (33%), Positives = 186/362 (51%), Gaps = 8/362 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+++D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL
Sbjct: 1 MNVTAYDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L
Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + +++ + +L+R R + +K+ S D +A S ITG +
Sbjct: 121 EAGIEVVSGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ V RA++ AIL G GTVLADDP + P+R++LD +
Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLRTLEC--EHI 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
AP + + N PV +L + ++ DL +L +L RG+ + E GA +
Sbjct: 239 RQGDAPTLYLHGNAVPVPSLQNAEFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGATL 298
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + + + LVD +++Y + +V+G+ P ++ + G D+ L Y
Sbjct: 299 SGALLQAGLVDELLVYFAPVVLGDAARPLLAGLGIDTMAQRRTLHLADVRQLGQDLRLRY 358
Query: 355 IG 356
+
Sbjct: 359 LP 360
>gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [Chlorobium ferrooxidans DSM 13031]
gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [Chlorobium ferrooxidans DSM 13031]
Length = 369
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 119/370 (32%), Positives = 181/370 (48%), Gaps = 13/370 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M+ + + G S NP V +IV DG++IG G G PHAEV A+
Sbjct: 2 MSLLCDDTVYMNRCIELALKGGGTVSPNPMVGSVIVCDGVIIGEGFHERYGAPHAEVNAI 61
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ R +T YV LEPCSH+G++PPC+ IIE GI RVVV DP V V+G+G+
Sbjct: 62 ASVADQELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAK 121
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI V + + L+ + ++LK+A + D I + S ITG
Sbjct: 122 LLGAGIAVTEGVLEAACVKLNEAFIKSHTTGLPFVSLKLAETLDGKIATSLGASKWITGE 181
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ +VH LRA+ DA++VG TV DD ELT R +P+R++LD L ++SKI
Sbjct: 182 AARMEVHRLRARYDAVVVGEATVRCDDAELTVRHCS--GRNPLRVVLDRRLSLPVESKIF 239
Query: 238 KTALLAPVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
T + + + + DL+++L L G+ S+LVE
Sbjct: 240 NTEAPTILFASSAWEGLEKAGLLRERGVTVLFVREHAGELDLRQVLEELHKHGILSILVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
GG+ ++ SFI RLVD I ++ + + G + S + +FGSD
Sbjct: 300 GGSRLSASFIRERLVDKIYMFIAPKLFGGDALSSFAPLGISIPDDAVVLKFETPRFFGSD 359
Query: 350 VCLEYIGKNL 359
+ LE ++L
Sbjct: 360 LLLEAYVQSL 369
>gi|39935793|ref|NP_948069.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
CGA009]
gi|39649646|emb|CAE28168.1| putative riboflavin-specific deaminase / reductase
[Rhodopseudomonas palustris CGA009]
Length = 389
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 151/362 (41%), Positives = 204/362 (56%), Gaps = 12/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG
Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI
Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRTAGI 144
Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + +E H ++ R ++R H+TLK+AVS D I AG V ITG + +
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRA+SDA+L+GIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A
Sbjct: 205 HLLRARSDAVLIGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPAASKLLHSARTT 264
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL-------KKLLTILVGRGVTSLLVEGGA 296
P+ ++ A + +L L +GVT L VEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLFVEGGA 324
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA S + L D I L+RS IG GI + PL ++ + G+D
Sbjct: 325 RVAASLVAGELADEIWLWRSDNAIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384
Query: 353 EY 354
Y
Sbjct: 385 IY 386
>gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
1003]
gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB
1003]
Length = 367
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 131/368 (35%), Positives = 187/368 (50%), Gaps = 16/368 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D RFM AL + +G NP+V C+IV G ++GRG T GG PHAE +AL++
Sbjct: 1 MSEADGRFMRLALGLAGRGLGNVWPNPAVGCVIVNGGRIVGRGWTQPGGRPHAERRALDQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++DPD RVSGRG L
Sbjct: 61 AGPAARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + +E + +L+R R + LK+ S D I +A S ITG ++
Sbjct: 121 GIAVETGVLAAEARAAQAGFLSRIERGRPWLALKLGASFDGRIALANGESQWITGPQARA 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QV LRA+ DA+LVG GT ADDP LT R +P+R++ L ++ +
Sbjct: 181 QVQALRARFDAVLVGGGTARADDPLLTLRHFK-PLRAPVRVVASRRLDLPRG-RLAGSLG 238
Query: 242 LAPVIIVTENDDPVLALAFR---------KKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
AP+ ++ + P A AF + D LL L RG+T +
Sbjct: 239 QAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDPVALLAALGARGLTRVFC 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
EGG A S + + LVD +I + + +V+G P L + G
Sbjct: 299 EGGGQFAASLMAAGLVDELIGFTAGVVLGGDARPGIGDLGLTRLAEAPRYRLDSLQPIGP 358
Query: 349 DVCLEYIG 356
DV ++
Sbjct: 359 DVLARWLR 366
>gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 360
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 122/356 (34%), Positives = 184/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG
Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129
T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V +
Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + K + + KR +T+K V+ D I + S IT ++ +VH +R +
Sbjct: 121 CEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRNE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I T
Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238
Query: 250 ENDDPVLAL---AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N + K +L ++L +L +GV+SLL+EGG V SFI +
Sbjct: 239 SNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L+D +ILY + +IG PS +E + K F + G D +
Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDYRFIGYPE 354
>gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum 3TCK]
gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum 3TCK]
Length = 371
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 107/370 (28%), Positives = 171/370 (46%), Gaps = 16/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL
Sbjct: 2 FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+ +GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L
Sbjct: 62 AGEQTKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ ++++ ++ LK+A S D ++ S ITG ++
Sbjct: 122 GIEVQTGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
V RA++ AIL TV+ADDP L R + P R+I+D ++
Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRV 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ D K+ A + + + + +L L+ L + + +
Sbjct: 242 TPDFKLFSLAGKTLLARAEMGQETWSDSVSQVIIPKEDDSEQLNLTSLMLELAKQDINHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A + S LVD +I+Y++ ++G L +
Sbjct: 302 WVEAGAELAGGLLASGLVDELIIYQAPKLMGCDSRSLINLKGLTSMSQVLSLEITDVRMI 361
Query: 347 GSDVCLEYIG 356
G D+ +
Sbjct: 362 GPDLRIIARV 371
>gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
Length = 367
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 114/359 (31%), Positives = 176/359 (49%), Gaps = 17/359 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ + T NP+V C+IVKDG+++G G G HAEV A+ EAGE+
Sbjct: 12 DQAWMKQAIALALQGQYSTKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREAGEQ 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+GATAYVTLEPC+HYGR+PPCA+ ++E G+ RVV+ DP+ V+G+G+Q L + GI V
Sbjct: 72 TQGATAYVTLEPCAHYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEV 131
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + L+A ++ LK+A S D MA S ITG ++ V
Sbjct: 132 DVGICQTEAHQLNAGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQH 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG-----LQEHSPMRIILDPHFKLSLDSKIIKTA 240
RA S ++ GI TVLADDP+L R P R++LD +L L ++I++
Sbjct: 192 FRAISGVVITGIETVLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQILQQP 251
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
V+ + + + L ++ + ++VE GA ++
Sbjct: 252 DTVMVMGPYRQALA--------DVGVLQFAVQPLDQLLKQLVQSHQIYDVMVEAGATLST 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ +LVD +I Y + ++G+ + + F + G DV L I
Sbjct: 304 AFLQEKLVDEMISYVAPTLLGQSARAMFNAEFSQMAEQLRFKLMDVTQLGDDVRLTLIP 362
>gi|319405760|emb|CBI79383.1| Riboflavin biosynthesis protein ribD [Bartonella sp. AR 15-3]
Length = 374
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 152/374 (40%), Positives = 216/374 (57%), Gaps = 12/374 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
M + D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAE
Sbjct: 1 MNKVAQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKETGSSIVGYGVTALRGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V+AL AG A GATAYVTLEPCSHYG++ PC +I GI RVV+ + DPD RV G G+
Sbjct: 61 VKALLMAGPLAYGATAYVTLEPCSHYGKTSPCVNALINAGITRVVIALSDPDQRVYGCGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + +E AYL + +R +TLK+A+S DN IG G SV I+
Sbjct: 121 TLLRAAGIEVTEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKSSVGIS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL SP+R+ILD ++ LD+K
Sbjct: 181 GEISRAQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLGMRSPIRVILDKDLRIPLDAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK------LLTILVGRGVTS 289
+++TA P ++ + + C +L +L R + S
Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVSICSVDTNNNVISPFTILQLLYQRKINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+++ VD +I + + I++G+ I +P + YL F + G+D
Sbjct: 301 VLLEGGAKTGEIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLS-EFNEIEMRMLGND 359
Query: 350 VCLEYIGKNLCLQE 363
++ K LC +E
Sbjct: 360 RLCKWRRKILCSRE 373
>gi|257455158|ref|ZP_05620396.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
SK60]
gi|257447491|gb|EEV22496.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus
SK60]
Length = 359
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 110/361 (30%), Positives = 158/361 (43%), Gaps = 21/361 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+MS A+ ++ T NPSV C+IVKD +IG G G PHAEV AL +A E
Sbjct: 12 QHQYYMSRAIELAKKGRFTTRPNPSVGCVIVKDNQIIGEGFHYQAGQPHAEVFALRQAYE 71
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+GA AYVTLEPCSH+GR+PPCA +I+ GI RVV+ V DP+ +V G G+ L Q
Sbjct: 72 RDAKHLQGAIAYVTLEPCSHHGRTPPCADALIQAGISRVVIAVVDPNPKVDGGGIAKLQQ 131
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + L+ + + + LKIA S D MA S IT S+
Sbjct: 132 AGIEVITGICEQAAYQLNEGFFKVMRGGLPFVRLKIATSLDGRTAMANGESKWITSDQSR 191
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V LRAQ+ AI+ G T+L D P L R L + ++
Sbjct: 192 EDVQRLRAQAGAIITGSETILQDHPALNIRSQQ----------LGANLDDIPQPLLVVLD 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + + + L T+ + +LVE GA VA
Sbjct: 242 RRQRIQMTDAWYQSQITHRPVLLIQDSTMSLT---TLLNTLKDNYQINDVLVEAGATVAA 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF+ LVD +++Y++ +G P + + V + +D+ L Y
Sbjct: 299 SFLQQGLVDELVVYQAPCFLGNSAKPMINFNAQHIHQQIIASLVSHETMETDIKLTYRFD 358
Query: 358 N 358
Sbjct: 359 K 359
>gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum UW551]
gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum IPO1609]
gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum UW551]
gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum IPO1609]
Length = 370
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 124/367 (33%), Positives = 175/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILIDSALDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A K DL +L L R + L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
MIT 9202]
gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str.
MIT 9202]
Length = 364
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 99/359 (27%), Positives = 176/359 (49%), Gaps = 8/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ + TS NP V +I+ K+G ++ G G PHAE A +
Sbjct: 8 HTKWMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQ 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++ L + G+
Sbjct: 68 DVKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQ 127
Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ ++ R K++ LK A+S D I + S IT S++ VH
Sbjct: 128 VHLGLCKKESLELNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNKESRSLVH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR++ DAI++G T+ D+P LT R + E P+R++ L S +
Sbjct: 188 SLRSEFDAIIIGGNTLRRDNPLLTTRGSKNPE--PLRVVFTKSLDLPSKSNLWDCGEAKT 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++I + L+ K + + + + + IL RG +L E G+ +A + I
Sbjct: 246 LVIYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRGCNKVLWECGSRLATAAIK 305
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
S + II + + ++G +P + E+ ++ SD + IG ++C++
Sbjct: 306 SNCIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKL----SDSKISLIGNDICVKG 360
>gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter sp. ADP1]
gi|49529501|emb|CAG67213.1| bifunctional protein [Includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) ] [Acinetobacter sp. ADP1]
Length = 362
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 122/365 (33%), Positives = 181/365 (49%), Gaps = 17/365 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +MS AL ++ T NP+V C+IVKD ++GRG TA G PHAEV AL
Sbjct: 1 MSEQERDHYWMSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG +A+ ATAYVTLEPCSHYGR+PPCA +IE G+ RVV+ DP+ V+G+G L+
Sbjct: 61 REAGVQAQNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLN 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q GI + E L+ + + ++ LK+A S D MA S ITG +
Sbjct: 121 QAGITTQVGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDS 234
+ V RA+S AI+ G+ TVLADD +L R + P RIILD +L L +
Sbjct: 181 RLDVQYWRARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTA 240
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+++ V+ + L + + + L I + +++E
Sbjct: 241 KLLQHPETVVVMGPFRQELADL--------GVVQFPVLPLQQLLEHIAKEHHIYDVMIEA 292
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVC 351
GA ++ +F+ LVD +I Y + ++G L++ + F + G D+
Sbjct: 293 GATLSTAFLQEDLVDEVISYVAPTLLGCSARAMFNAELDKMAQQLRFELIDLTQLGQDIR 352
Query: 352 LEYIG 356
L +
Sbjct: 353 LRLVP 357
>gi|123966659|ref|YP_001011740.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9515]
gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9515]
Length = 368
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 98/359 (27%), Positives = 165/359 (45%), Gaps = 9/359 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
++ D ++M A+ + G T+ NP V +I+ K+G +I G + G PHAE A
Sbjct: 3 EINGIDIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAF 62
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ AR YV LEPC H+G++PPC II GI++V V ++DPD RVSG+G++ L
Sbjct: 63 NNLKKNARDGILYVNLEPCCHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLK 122
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + L+ + + + LK A+S D +G+ S IT S
Sbjct: 123 DSGIEVHLGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMDGRVGLKNGKSKWITNKDS 182
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
++ VH RA DAI++G T+ DDP LT R E P+R++ L S
Sbjct: 183 RSLVHSHRACFDAIVIGGNTLRKDDPLLTSRGRRNPE--PLRVVFTKTLDLPEKSNFWDF 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L +++ + L + + I + L +L +G ++L E G +A
Sbjct: 241 NLAKTLVVYDSSCADKNFLKRIPEGVEIEELSSDNPILLSNLLAKKGCNNVLWECGPKLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
S I + + ++ + + ++G +P + N ++ G D+ ++
Sbjct: 301 TSAIKAGCIQELMTFIAPKILGGISSMNPFSDFEFTDMDQVFNLCKSEINFIGDDIFVK 359
>gi|33861821|ref|NP_893382.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 362
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 99/355 (27%), Positives = 170/355 (47%), Gaps = 9/355 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M A+ + G TS NP V +I+ K+G +I G + G PHAE A
Sbjct: 7 IDIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLK 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++AR T YV LEPC H G++PPC II GI+RV V ++DPD R+SG+G++ L GI
Sbjct: 67 KDARDGTIYVNLEPCCHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGI 126
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + E K +++ + + ++ +K A+S D +G+ S IT S++ V
Sbjct: 127 KVHLGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMDGRVGLKNGKSKWITNKDSRSLV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LRA DAI++G T+ DDP LT R E P+R++ L + S + L
Sbjct: 187 HSLRASFDAIVIGGNTLRKDDPFLTSRGIRNPE--PLRVVFTKTLNLPVKSNLWDCKLAR 244
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+++ + L + + I + L +L +G ++ E G +A S +
Sbjct: 245 TLVVYDASTADEKFLKRIPEGVEIEKLSSDNPILLSNLLAKKGCNNVFWECGPKLATSAM 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
+ + ++ + + ++G +P + N + G+D+ ++
Sbjct: 305 KAGCIQELMTFIAPKILGGVSSMNPFSDFEFTDMDEVFNLNEPETSFIGNDIYVK 359
>gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
Length = 371
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 119/359 (33%), Positives = 174/359 (48%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL +R +G TS NP V ++VKDG + G G G HAEV A+ A
Sbjct: 3 DEDYMDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGL 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGA YVTLEPCSH+G++PPCA IIE GI+RVV+ DP+ V+GRG+ L GI V
Sbjct: 63 ARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIEV 122
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E +++ + R ++T+K A S D S IT S+ VH
Sbjct: 123 EVGIRREEAEEINSAFFHFMRTSRPYVTIKAAASFDGKTAANTGDSQWITSPESREDVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + DAIL G+ TV+ D+P+LT R +P+R+ILD ++ D+ I+ +
Sbjct: 183 LRHEHDAILTGVNTVIHDNPQLTAR-LPRGGKNPIRVILDSTLRIPGDAAILHDQKAPVI 241
Query: 246 IIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I N D A + + + K+L L R + S+ VEGG+ + SFI
Sbjct: 242 IFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEELGTRQILSVFVEGGSEIHASFI 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
L IILY + +IG + + + G D+ + + +
Sbjct: 302 KEGLFQQIILYAAPKIIGGRKAVPFIGGEGISSMDQSTPLAFKSAERIGPDLKIIAVPQ 360
>gi|212212876|ref|YP_002303812.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
burnetii CbuG_Q212]
gi|212011286|gb|ACJ18667.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
burnetii CbuG_Q212]
Length = 354
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+
Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L
Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ G+ + E F +Y KR +T K+A+S D I V +TG +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA
Sbjct: 179 QYTHEWRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAA 297
V E D +K I + L ++ G+ L +E G
Sbjct: 238 ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
SF+ L++ ++Y + ++G +P+ + + V FG DV
Sbjct: 298 CFQSFLKENLINRALIYIAPKILGSTAMPAF--QLPFSFSGYSVEWRQFGEDVM 349
>gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Roseburia intestinalis XB6B4]
Length = 396
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 184/364 (50%), Gaps = 15/364 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G
Sbjct: 34 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ GA YVTLEPC HYG++PPC Q +IE GI V V D + V+G G++ L ++GI
Sbjct: 94 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAKDINPLVAGGGIRQLREQGI 153
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V + + E + + K ++ +K A++ D I A S ITG ++ QV
Sbjct: 154 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSKWITGEAAREQV 213
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +R + I+VG GTV+ADDP L CR Q P+RI+ D ++ L S+I++TA
Sbjct: 214 HRMRHEMTGIMVGAGTVIADDPMLNCR--LPQTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 271
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299
II T D ++K II + DLK+L+ L G+ S+L+EGGA +
Sbjct: 272 KTIIATCCQDEARIREYQKYACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGAMLN 331
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
S + + +V+ + Y + + G SP+ ++ + R G D+ +
Sbjct: 332 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGMGVDHPDDAYCMVSQRVQQVGEDILIAG 391
Query: 355 IGKN 358
KN
Sbjct: 392 ELKN 395
>gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum
ferrodiazotrophum]
Length = 397
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 178/362 (49%), Gaps = 14/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D R+M AL + + NP V ++V+DG V+G G G HAEV AL AG
Sbjct: 8 PADRRWMQRALVLAEKGRDTVAPNPMVGAVVVRDGKVVGEGYHREAGQEHAEVLALRAAG 67
Query: 65 EEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ ARGAT YV LEPC H R+PPC + I++ G+ RVVV + DP+ RV GRGL+ L+ +
Sbjct: 68 DRARGATLYVNLEPCCHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLAGQR 127
Query: 124 IIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + + + + + R ++TLK A+S D I + S I+G S
Sbjct: 128 LDVSEGLFAARAFEQNRGFSSLIRQGRPYVTLKGAMSLDGKIATSTGDSQWISGSRSLAY 187
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR DAILVGI T + DDP LT RL G + H P R+ILD +L DS++
Sbjct: 188 AHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQPARVILDSTGRLPPDSRLFGEEGG 247
Query: 243 APVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PV +V P +L R + + DL+ LL +L G+ ++LVEGG+
Sbjct: 248 GPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEIDLRALLAVLAEEGLLTVLVEGGS 307
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR------RDYFGSDV 350
V SF+ + LVD I + + ++IG L R G D+
Sbjct: 308 RVNASFLAAGLVDRIRVVLAPLLIGGTDAIGWLGGASPPTLARARRLPGFSVIRRLGDDL 367
Query: 351 CL 352
+
Sbjct: 368 LV 369
>gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Ralstonia solanacearum GMI1000]
gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [Ralstonia solanacearum GMI1000]
Length = 370
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 174/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++ H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILIDSGLDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A + DL +L L R + L VE
Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|88704437|ref|ZP_01102151.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
KT71]
gi|88701488|gb|EAQ98593.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis
KT71]
Length = 377
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 113/364 (31%), Positives = 183/364 (50%), Gaps = 12/364 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +FM+ ALR + NP V C++V+D V+G G T G HAE+ AL+ AG+
Sbjct: 14 DRQFMARALRLAERGKYWARPNPHVGCVLVRDSTVVGEGFTQPAGGDHAEIMALKAAGDA 73
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG+TAYVTLEPC+H GR+PPC +I G+ RV V + DP+ +V G G+ L +G+ V
Sbjct: 74 ARGSTAYVTLEPCAHTGRTPPCCNALIAAGVARVFVGLRDPNPKVDGGGIHRLQAEGLAV 133
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ M + + L +L RQ R + +K+A+S D MA S ITG ++ V
Sbjct: 134 HQGLMADQVEAQLAGFLQRQRLGRPRLRIKLAMSLDGRTAMASGESQWITGPQARLDVQK 193
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-------QEHSPMRIILDPHFKLSLDSKIIK 238
LRA+S AIL G+GTVL DD LT R + + +R++ D H + + +++
Sbjct: 194 LRAESCAILTGVGTVLEDDCALTVRDSAFDDELLPAPQRRALRVVADRHLRTPAHAAVLQ 253
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ ++ + D L + +++ L R +L+E G +
Sbjct: 254 GEQPSLILHGSGADASHLPET-LEHLALPGEAGGVAPAEIMAALAARECNEILLESGPTL 312
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A + + S + D++I+Y + +++G P PL+E V R G D ++
Sbjct: 313 AGAMLRSGMADALIVYIAPVLLGSRARPLLELPLDEMAEALRLQLVDRRQIGDDHRFVFV 372
Query: 356 GKNL 359
+++
Sbjct: 373 PQSV 376
>gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 355
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 97/352 (27%), Positives = 161/352 (45%), Gaps = 12/352 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++M AL ++ G TNP V C+IVKD ++GRG G HAEV A+ +AG+ A
Sbjct: 5 KYMQLALDLAQKGKGRVYTNPLVGCVIVKDNKIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GA YVTLEPC+ YG+ PC II+ GI+RV V D G + L + I V
Sbjct: 65 GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAVPDS---NVSGGREILERNNIKVHE 121
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + L + ++ + +++K A++ D I S IT S+N VH +RA
Sbjct: 122 GLLKKQSRILIKDYLKHLKNKPKVSIKAAMTLDGKIATYEYDSKWITSEKSRNFVHKMRA 181
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+LVG+ T L D+P L + +P+R+++D KL + + ++
Sbjct: 182 RYDAVLVGMNTALKDNPIL--TTHSKNLKNPIRVVIDSGLKLPKSHHLFDACVPTVIVYD 239
Query: 249 TENDDPVLALAFRKKN--INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ L I +D ++ L + +L+EGG+ + S + S
Sbjct: 240 LNITNIPKYLNREGIILSPVNIDAAKKDFSVIIKKLDSLSIKRILIEGGSEIIASALFSD 299
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+VD I + + + G S + ++K ++ G D+ +
Sbjct: 300 VVDDIYFFIAPKITGGRTAISVVGGTGVKKMSESLCIKNMKVKKIGPDLLIT 351
>gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus bovienii SS-2004]
gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus bovienii SS-2004]
Length = 369
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 120/368 (32%), Positives = 171/368 (46%), Gaps = 18/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++MS AL + TS NP+V C+IV+ ++G G G PHAEV AL AG
Sbjct: 2 TLDEKYMSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+A+GATAYVTLEPCSH+G++PPCA +I GI RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 GKAKGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGI 121
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + L+ R ++ LK+ S D +A S IT ++ V
Sbjct: 122 AVEHGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSL 232
RAQ AIL TVLADDP LT R + Q P+RII+D +++
Sbjct: 182 QQFRAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTP 241
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + D + + DL L+ L R + S+
Sbjct: 242 Q--HQVVQQVGQCWLARTHTDQQQWPDNVDHIVLPAHGGGVDLVLLMMQLGKRQINSVWA 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G +A + ++ LVD +ILY + V+G L++ F GS
Sbjct: 300 ECGPVLAGALLSLGLVDELILYIAPKVLGNTARGLFAIPELQKLSDAPEFTLFDVRQIGS 359
Query: 349 DVCLEYIG 356
DV L
Sbjct: 360 DVRLRLRP 367
>gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlorobium phaeobacteroides DSM 266]
gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlorobium phaeobacteroides DSM 266]
Length = 366
Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 13/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+M+ + G+ S NP V +IV +G ++G G G PHAEV A+ G
Sbjct: 4 ESHEWYMNRCFELALQGSGMVSPNPMVGSVIVHNGEIVGEGYHERFGGPHAEVHAIASVG 63
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +T YV LEPCSH+G++PPCA I+ I RVV+ DP +V+G+G++ L+
Sbjct: 64 NAEVLQNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAA 123
Query: 123 GIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + + L+ + +TLK+A + D I AG S ITG S+
Sbjct: 124 GVQVTEGVLMPEALKLNEAFIKSCTVGLPFVTLKLAQTLDGKIATAGGASRWITGEESRT 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QVH LR DA++VG TV ADD ELT R +P+R++LD L D++I T
Sbjct: 184 QVHRLRCNCDAVVVGEATVQADDSELTVRHCA--GRNPLRVLLDRRLSLFADARIFSTEA 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
V + V A RK+ + +I D DLK++L L RG+ SLLVEGG+
Sbjct: 242 ATLVFTTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQELHRRGIISLLVEGGSR 301
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
++ SF+ + LVD ++++ + + G G+ + +E +FG D+ LE
Sbjct: 302 LSASFLGAALVDKLLVFIAPRLFGGDGLSAFAPLGVELPDQAVQLRFQPPVFFGRDLLLE 361
Query: 354 YIG 356
Sbjct: 362 AYV 364
>gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
Length = 365
Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 134/362 (37%), Positives = 186/362 (51%), Gaps = 11/362 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + M AL +R TS NP V C+I G ++G+G G PHAEV AL +AGE
Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI
Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ +E+E + +L+R R + +K A S D +A S ITG ++ V
Sbjct: 125 TESGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRA+S A+L GIGTVLAD+P L R P RI+LD + L S ++ L
Sbjct: 185 TLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSKLQTPLGSHMVSDDLSPT 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299
VI+ +D+ L +I I+ DL LL L G ++VE GA +
Sbjct: 244 VIVTAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGATLT 303
Query: 300 HSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+FI + L D I+LY++ ++GEG +P+ E + + G DV
Sbjct: 304 SAFIEAGLADEIVLYQAPKILGEGRSLLTLPANPAVLTSEGEWESRSVELIGQDVKWVLR 363
Query: 356 GK 357
K
Sbjct: 364 KK 365
>gi|161830583|ref|YP_001596568.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
gi|161762450|gb|ABX78092.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331]
Length = 354
Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+
Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L
Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKDVYYGLHDPNLAVCGKGIEQLQ 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ G+ + E F +Y KR +T K+A+S D I V +TG +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAA 297
V E D +K I + L ++ G+ L +E G
Sbjct: 238 ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
SF+ L++ ++Y + ++G +P+ + + V FG DV
Sbjct: 298 CFQSFLKENLINRALIYIAPKILGSTAMPAF--QLPFSFSGYSVEWRQFGEDVM 349
>gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arsenophonus nasoniae]
Length = 369
Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 117/369 (31%), Positives = 175/369 (47%), Gaps = 16/369 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++FD +FMS AL ++ TS NP+V C+IV+DG V+G G G HAE+ AL+
Sbjct: 1 MTTFDKQFMSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSHYG++PPCA +I GI+RVVV + DP+ +V+GRGL L Q
Sbjct: 61 AGEKANGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ R ++ LK+A S D +A S IT ++
Sbjct: 121 GIEVIHGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V RAQ+ AIL TVLAD+P L R + + + + +
Sbjct: 181 DVQSFRAQASAILTTSATVLADNPALNVRWKDFAPELQNIYP-EESLRQPIRIVLDRNNQ 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----------KLLTILVGRGVTSLL 291
+ P VT++ + N + L+ L R + S+
Sbjct: 240 VKPEHFVTKSAGECWLIRSNPIAQNWFGDVKQITIPTYGKGIDLVLLMMQLAKRNINSIW 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347
VE G +A + + LVD +I+Y + ++GE L++ F + +
Sbjct: 300 VESGPTLAGTLLTLGLVDELIVYVAPKILGESARGLINIPELQKLKDASAFEFINIELID 359
Query: 348 SDVCLEYIG 356
D+ L
Sbjct: 360 IDLRLTLRP 368
>gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CMR15]
Length = 370
Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 174/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++
Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
Q GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 RQAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++ H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILIDSGLDVPLDAHILT 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A + DL +L L R + L VE
Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
Length = 373
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 126/371 (33%), Positives = 189/371 (50%), Gaps = 16/371 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL A
Sbjct: 3 SIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L G
Sbjct: 63 GSDAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAG 122
Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD + +E ++ +L R + +T+K+A S D ++ S ITG ++
Sbjct: 123 IRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII--LDPHFKLSLDSKIIKTA 240
V LRA+ A++ G+ T+LADDP L R + L + + ++ LDS+
Sbjct: 183 VQRLRARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLGH 242
Query: 241 ------LLAPVIIVTENDDPVLALAFRKKNINIIY---CDCRDLKKLLTILVGRGVTSLL 291
+ +P+++V+ P A ++ D R L L+G S+L
Sbjct: 243 ELNLFKIDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLLGESCNSVL 302
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFG 347
VE GA +A +F+N L D I+LY++ ++G G + + + G
Sbjct: 303 VEAGATLAGAFVNQGLADEIVLYQAMKILGSQGRNLLTLDDFQAMSEVPKINLIDERKVG 362
Query: 348 SDVCLEYIGKN 358
D L N
Sbjct: 363 PDTRLTLRVSN 373
>gi|192291382|ref|YP_001991987.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
TIE-1]
gi|192285131|gb|ACF01512.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
TIE-1]
Length = 389
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 153/362 (42%), Positives = 206/362 (56%), Gaps = 12/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG
Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI
Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRAAGI 144
Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + +E H ++ R ++R H+TLK+AVS D I AG V ITG + +
Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A +
Sbjct: 205 HLLRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRALRIPAASKLLHSARTS 264
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL-------KKLLTILVGRGVTSLLVEGGA 296
P+ ++ A + +L L +GVT LLVEGGA
Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLLVEGGA 324
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA S + L D I L+RS IG GI + PL ++ + G+D
Sbjct: 325 RVAASLVTGELADEIWLWRSDNPIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384
Query: 353 EY 354
Y
Sbjct: 385 IY 386
>gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 369
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 132/365 (36%), Positives = 189/365 (51%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +ESE + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL +L+ +L G G ++VE GA
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G DV
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSGKDLFALPENRAALSAPPLWTPVSTEILGHDVKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|29653981|ref|NP_819673.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
burnetii RSA 493]
gi|29541244|gb|AAO90187.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
burnetii RSA 493]
Length = 354
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+
Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L
Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ G+ + E F +Y KR +T K+A+S D I V +TG +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAA 297
V E D +K I + L ++ G+ L +E G
Sbjct: 238 ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
SF+ L++ ++Y + ++G +P+ + + V FG DV
Sbjct: 298 CFQSFLKENLINRALIYIAPKILGSTAMPAF--QLPFSFSGYSVEWRQFGEDVM 349
>gi|153209016|ref|ZP_01947210.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
Q177']
gi|165920291|ref|ZP_02219563.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
gi|212219122|ref|YP_002305909.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
burnetii CbuK_Q154]
gi|120575553|gb|EAX32177.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat
Q177']
gi|165916847|gb|EDR35451.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334]
gi|212013384|gb|ACJ20764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
burnetii CbuK_Q154]
Length = 354
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+
Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L
Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ G+ + E F +Y KR +T K+A+S D I V +TG +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAA 297
V E D +K I + L ++ G+ L +E G
Sbjct: 238 ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
SF+ L++ ++Y + ++G +P+ + + V FG DV
Sbjct: 298 CFQSFLKENLINRALIYIAPKILGSTAMPAF--QLPFSFSGYSVEWRQFGEDVM 349
>gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
18RS21]
gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
18RS21]
Length = 362
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 183/353 (51%), Gaps = 12/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+
Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ +
Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E ++ K+ + LK A++ D I S I+ S+ V LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238
Query: 250 ENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+D+ ++ DLK L+TIL G+ SLL+EGG+++ S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALKA 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+V+ +I++ + +IG + + L + SDV +E
Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351
>gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CFBP2957]
gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CFBP2957]
Length = 370
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 123/367 (33%), Positives = 175/367 (47%), Gaps = 13/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++
Sbjct: 2 FSDFDHVMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E E + +++R + +K+ S D + S IT
Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237
++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I
Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIP-TPRQPRRILIDSGLDVPLDAHILS 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVE 293
P +I + A + DL +L L R + L VE
Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD I++Y + V+G G PL+ F G D+
Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360
Query: 351 CLEYIGK 357
+
Sbjct: 361 RILARRN 367
>gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
180]
gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
180]
Length = 381
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 106/368 (28%), Positives = 171/368 (46%), Gaps = 16/368 (4%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M+ A+ + T NP V C++V+DG V+G G G PHAE AL +AGE
Sbjct: 13 DDRLHMARAIGLAERGRYTTDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGE 72
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
AR AT YVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ RV+GRG++ L Q GI
Sbjct: 73 RARDATVYVTLEPCSHHGRTPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGIS 132
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
VD ESE + ++ R + R ++ K+A S D +A S IT ++ V
Sbjct: 133 VDVGCLESEARALNPGFVKRYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQ 192
Query: 185 LLRAQSDAILV---------GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
RA S AI+ V EL+ P R+++D H++ ++
Sbjct: 193 RWRAGSSAIVTGLGTVLGDDPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTAR 252
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVE 293
++ ++ + D AL + + + L+ L R V +L+E
Sbjct: 253 LLGLPGRTLIVGIGPRDTAAAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVLLE 312
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
G+ ++ + + + LVD I+LY++ ++G+ ++ + G D
Sbjct: 313 AGSTLSGAAVRAGLVDEILLYQAPCLMGQAAKGLFDLPGIDTMLDRVGLEILEVRSIGRD 372
Query: 350 VCLEYIGK 357
+ +
Sbjct: 373 LRIRARPD 380
>gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
Length = 362
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 117/363 (32%), Positives = 182/363 (50%), Gaps = 17/363 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR + + T NP V C++VK+G+++G G G HAEV AL AGE ARGA
Sbjct: 1 MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALRAAGESARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCSHYGR+PPCA+ +++ G+RRV+ ++DP+ V+G+GL L G+ +
Sbjct: 61 DCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESEVGC 120
Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L+ + R + R + +K+A S D + S ITG ++ V LRA+
Sbjct: 121 MAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKLRAR 180
Query: 190 SDAILVGIGTVLADDPELTC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
S A++ GIGT++AD+P L + + PMR+ LD + DS ++K
Sbjct: 181 SSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLKLPGKI 240
Query: 244 PVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ T+ + LA + DLK LL+ L R +LVE GA +
Sbjct: 241 LLVACTDPSEGWLAQRQSSGADLEVLKLAGENGRIDLKALLSTLAARECNEVLVEAGANL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
A +F+ L D I Y + ++G G P+ + Y + + G DV + +
Sbjct: 301 AGAFVAQGLADEIWTYTAPKLMG-EGRPAFVLPRYEQMDQVITLKLNDVRQVGDDVRMIW 359
Query: 355 IGK 357
+
Sbjct: 360 RKE 362
>gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568]
Length = 369
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 184/366 (50%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGKN 358
+ +
Sbjct: 361 VFRKND 366
>gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
COH1]
gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae
COH1]
Length = 362
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 183/353 (51%), Gaps = 12/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+
Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ +
Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E ++ K+ + LK A++ D I S I+ S+ V LR +
Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P I T
Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEA--LVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238
Query: 250 ENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+D+ ++ DLK L+TIL G+ SLL+EGG+++ S + +
Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALEA 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
+V+ +I++ + +IG + + L + SDV +E
Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351
>gi|73666745|ref|YP_302761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ehrlichia canis str. Jake]
gi|72393886|gb|AAZ68163.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ehrlichia canis str. Jake]
Length = 361
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 134/351 (38%), Positives = 194/351 (55%), Gaps = 7/351 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +FMS ALR +R +G NP+V C++V GI++GRG T GG PHAEV AL AG
Sbjct: 4 DDKKFMSLALRIARRGLGNVFPNPAVGCIVVNRGIIVGRGWTQVGGRPHAEVVALNNAGY 63
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++ PCA +I+ GI+R+V+ DPDVRVSG G++ L I
Sbjct: 64 LAKGATVYVTLEPCSHYGKTGPCALKLIDAGIKRMVIAARDPDVRVSGNGIKLLRDANID 123
Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + L+ K R IT+K+A + D I ++ S IT +++N VH
Sbjct: 124 VKCDLMYKEAQELNVGFFFTKIKGRPFITVKLASTLDGKIALSNGNSKWITNQLTRNWVH 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R+ DA++VG TV+ DDP L R+ GL+ +SP+RI++D K+ I+KTA + P
Sbjct: 184 KQRSMYDAVMVGSNTVVHDDPMLNTRIPGLECYSPVRIVIDRFGKICTYHNIVKTADIIP 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I+T++ + + ++ K+ I + G+T L VEGG+ + +
Sbjct: 244 TYILTDDTSKTKLGKAKYLIVTGTDNFLKNAMKV--ISMKIGITRLFVEGGSILITELLK 301
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVC 351
S+LVD II RS + G + S + L NF + YF DV
Sbjct: 302 SQLVDRIIWCRSNKIFGANAVSSVGDLNILTLQNLYNFRKIDTLYFDDDVV 352
>gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
BAA-798]
gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC
BAA-798]
Length = 364
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 119/364 (32%), Positives = 182/364 (50%), Gaps = 15/364 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL + +G T NP+V ++V+DG+VIG+G T G PHAEV AL EAGE ARGA
Sbjct: 1 MRRALELAESALGRTWPNPAVGAVVVRDGLVIGKGATQPPGGPHAEVVALAEAGEAARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCSH+GR+PPC + II G+R V DP+ +V GRG+ L + GI V +
Sbjct: 61 ILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLGL 120
Query: 131 ESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ ++V +TLK A++ D I S ITG ++ H LR +
Sbjct: 121 CEREATRINEGFFKRVRTGLPFVTLKYAMTLDGRIATRTGSSKWITGEEARTCAHRLRDR 180
Query: 190 SDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+DAI+VG+GTVLADDP LT R H P+R+++D + + +++
Sbjct: 181 ADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPLRVVVDSRGRTPARAAMLRRDTPGR 240
Query: 245 VIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++ P + + L+ LL L GV + LVEGG +
Sbjct: 241 TLVACTTLAPEDRRLAWQDAGAEVAVFAPEDGRVPLEALLRYLGDTGVNTALVEGGGTLH 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ ++ L D I+ + + +IG G P+P+ + + DV + +G++L
Sbjct: 301 GALLDVGLADKIVAFVAPKLIGGEGAPAPVGGRGVADMASALELA----DVRVTQVGRDL 356
Query: 360 CLQE 363
++
Sbjct: 357 LIEG 360
>gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
23970]
gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
23970]
Length = 369
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +ESE + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRTFA-TLRQPARIVLDSRLRLPQNSHLLTDGQ 240
Query: 242 LAPVIIVTEND-----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I E D R + DL +L+ +L G ++VE GA
Sbjct: 241 SPTLIATLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G DV
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|123968996|ref|YP_001009854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. AS9601]
gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. AS9601]
Length = 364
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 97/359 (27%), Positives = 164/359 (45%), Gaps = 9/359 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ + TS NP V +I+ K+G +I G G PHAE A +
Sbjct: 8 HIKWMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKK 67
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +G + YV LEPC H GR+PPC +I GI++ + ++DPD RV+G+G++ L + GI
Sbjct: 68 DPKGGSIYVNLEPCCHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQ 127
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + L+ + + K A+S D I + S IT S+ VH
Sbjct: 128 VHLGLCKKESLDLNNAFIHRNITNKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R++ DAI++G T+ D+P LT R E P+R++ L S +
Sbjct: 188 SFRSEFDAIIIGGNTLRRDNPLLTTRGLKNPE--PLRVVFTKSLDLPTKSNLWDCNKAKT 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++I + L K++ I + + + IL RG +L E G +A + I
Sbjct: 246 LVIYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRGCNKVLWECGPRLATAAIK 305
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIGKN 358
S + II + + ++G +PL + + ++ G D+C++ KN
Sbjct: 306 SNCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSESQHSLIGDDICVKGSLKN 364
>gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Alkalilimnicola ehrlichii MLHE-1]
gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Alkalilimnicola ehrlichii MLHE-1]
Length = 369
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 175/364 (48%), Gaps = 9/364 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D FM ALR +R NP+V C++V+DG+++G G G PHAE A
Sbjct: 1 MSGFSPADNLFMGRALRLARRPQQPPHPNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AGE+A GATAYVTLEPCSH+GR+PPC++ ++ G+ RVV + DP+ +V+GRGL+ L
Sbjct: 61 LHRAGEQASGATAYVTLEPCSHHGRTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V M + + R R + LK A S D MA S IT
Sbjct: 121 RAAGLEVATGLMAEQAAALNPGFTQRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKII 237
++ VH RA+SDA+L GIGTVLADDP L R G++ P R +LD + D+ ++
Sbjct: 181 ARADVHRWRARSDAMLTGIGTVLADDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLL 240
Query: 238 KTALLAPVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ V L A + DL L L G+G +LVE G
Sbjct: 241 RGEGATLFHGPDVAAGQIRRLTDAGAHCVALPLADGRLDLGAALDWLGGQGCNEVLVEAG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351
+ + + LVD +LY + ++G+ P LE + G D+
Sbjct: 301 PTLGGALSRAGLVDEWLLYLAPHLMGDAARPLLHWPGLETMSQRQPLRVQDCRLVGPDLR 360
Query: 352 LEYI 355
L
Sbjct: 361 LTLR 364
>gi|241667512|ref|ZP_04755090.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254876058|ref|ZP_05248768.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842079|gb|EET20493.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 356
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 110/361 (30%), Positives = 169/361 (46%), Gaps = 14/361 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++
Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L
Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120
Query: 123 GIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + + Q ++ + K A+S D I + G S I+ +
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSNEAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+ ++ P+R I+ + S +
Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPSLDVRIQLSKKKHPVRFIISNNLSEVDKSWRVLDQN 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V +A I + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISAQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+FIN +L++ Y S +VI ++ + + G D+ + K
Sbjct: 301 TLENFINQKLINEFATYLSPVVI---------AGCNPKEKLIFQDVSFLGEDLLINSYFK 351
Query: 358 N 358
Sbjct: 352 E 352
>gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS]
Length = 373
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 120/363 (33%), Positives = 167/363 (46%), Gaps = 13/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M L + G S NP V +IV G VIG G G PHAEV A+
Sbjct: 11 PEDETYMWRCLELAERGAGSVSPNPMVGSVIVCAGRVIGEGWHRQYGGPHAEVDAIASVE 70
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+E R +T YV LEPCSHYG++PPCA I+E I RVVV DP +V+G+G+ L +
Sbjct: 71 DESLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARLREA 130
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L+ K R + LK A + D I + S ITG S+
Sbjct: 131 GIEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEESRC 190
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QVH LR DA+L G TVLAD+ ELT R P+R++LDP ++ + +I A
Sbjct: 191 QVHRLRCIYDAVLCGASTVLADNTELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFNDAA 248
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297
V + E DP L + I + D ++ L R + S+LVEGG+
Sbjct: 249 KTLVFALREEADPDLVRQLEARGIEVATVGEAEGSLDFAEVFAELHKRRLLSVLVEGGSR 308
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+A + + S VD ++ + + G G+ S + FG D+ LE
Sbjct: 309 LASAMVRSGFVDKYYVFIAPKLFGGDGLASFGALGVTHPDYAVKLSFSGIRRFGEDLLLE 368
Query: 354 YIG 356
Sbjct: 369 AYP 371
>gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
Length = 369
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 181/365 (49%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + TS NP V C+I + G V+G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGKMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI ++ + L+ +R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKMECGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPYSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius LAA1]
gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus
acidocaldarius LAA1]
Length = 371
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 115/363 (31%), Positives = 177/363 (48%), Gaps = 14/363 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M AL +R G TS NP V ++V G+V+G+G G PHAEV AL AG+
Sbjct: 4 DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGLVVGQGAHLMAGTPHAEVHALRMAGDA 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L G+ V
Sbjct: 64 AKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGLEV 123
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E + + R R ++ K+A++ + + S +TG ++ VH
Sbjct: 124 SVGVLEVEARELNRHFFHRVETGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHR 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
LR AI VG+GTVL DDPELT R ++ P+R++ D + ++++
Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDRQPLRVVFDTRLRTPPTARLLTAPGR 243
Query: 243 APVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
++ A + DL L+ + G +LLVEGG
Sbjct: 244 TLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGHLDLHAALSAIAAEGANALLVEGGPT 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLE 353
+A + + SRL+D + +Y + ++ GG+P+ VR ++ G D+ L
Sbjct: 304 LASALLQSRLIDEVRVYLAPKLL-AGGLPAFAGAFTQSMSASVELHGVRSEWVGDDLVLT 362
Query: 354 YIG 356
Sbjct: 363 GRV 365
>gi|167626935|ref|YP_001677435.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167596936|gb|ABZ86934.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 356
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 110/361 (30%), Positives = 169/361 (46%), Gaps = 14/361 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++
Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L
Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120
Query: 123 GIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + + Q ++ + K A+S D I + G S I+ +
Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSKEAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+ ++ P+R I+ + S +
Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPGLDVRIQLSKKKHPVRFIISNNLSEVDKSWKVLDQN 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V +A I + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISTQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+FIN +L++ Y S +VI ++ + + G D+ + K
Sbjct: 301 TLENFINQKLINEFATYLSPVVI---------AGCNPKEKLIFQDVSFLGEDLLINSYFK 351
Query: 358 N 358
Sbjct: 352 E 352
>gi|88607630|ref|YP_504671.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
gi|88598693|gb|ABD44163.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ]
Length = 364
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 126/325 (38%), Positives = 178/325 (54%), Gaps = 3/325 (0%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM+ AL +R +G NP+V C++++DG+V+GRG T GG PHAE+ AL+ AG
Sbjct: 4 DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT YVTLEPC H G + PC +I G+ RVV+ V DPD RVSG+G+ L GI V
Sbjct: 64 AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L+A R IT K+A + D I IT +++ VH
Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRWITNDLTRKWVHK 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA DAILVG TV+ADDP L CRL GL++HSP+R+++D KL KI+ TA P
Sbjct: 184 QRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLLAHHKIVCTAGTIPT 243
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
IVT+ND + + ++ ++ + + G+T L VEGG + +
Sbjct: 244 YIVTDNDPQCVFENVKYIKVDGGTEFLENM--VRALTAQLGITRLFVEGGGILITELLKK 301
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE 330
+L+D I R+ + G G+ S +
Sbjct: 302 KLIDRFIWTRANKISGSKGLNSITD 326
>gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
Length = 366
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 14/359 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M AL + G TS NP V C+IV DG V+G+G G PHAE+ A+++AGE
Sbjct: 3 DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ GATAYVTLEPCSHYGR+ PC + +I+ GI++VV DP+ RVSGRG + L + G+
Sbjct: 63 KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ++ + ++ R + LK A++ D I S ITG ++ H
Sbjct: 123 VVSGVLADKAYRQNEIFMHYMKTGRPFVALKYAMTLDGKIATVSGDSKWITGVKARTYAH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR+ DAILVG TV DDP LT RL +P+RIILD L L+ K+
Sbjct: 183 RLRSWYDAILVGRETVAQDDPSLTVRLVE--GKNPLRIILDSKASLPLERKVFTDGAADT 240
Query: 245 VIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+++VT AF DL LL L + VTS+LVEGG+ +
Sbjct: 241 LLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLLQQLAKKDVTSVLVEGGSDIH 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+F ++ LV+ + + + +IG + V D+ +
Sbjct: 301 GAFFDAGLVERVYAFIAPSLIGGNKSRPAIGGQGASTMEQKVTLQEVTTLPLEPDLLVT 359
>gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
2926]
gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM
2926]
Length = 359
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 108/361 (29%), Positives = 181/361 (50%), Gaps = 11/361 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL+ + G + NP V ++VK+G ++G G G PHAEV AL EAG
Sbjct: 1 MDKKYMETALKLALKGEGNVNPNPMVGAVVVKNGTIVGEGYHKQYGGPHAEVYALNEAGS 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
E RGAT YVTLEPCSHYG++PPCA+ IIE GI++ V+ DP+ V+GRG++ L + GI
Sbjct: 61 ECRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIE 120
Query: 126 VDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + + + L+ ++ + LK A++ D I S IT +S+ +V
Sbjct: 121 VEVGLMEKEALELNRVFMKYITTEKPFVFLKCAITLDGKIAARTGSSKWITNEVSREKVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR + I+VG T++ D+P L R+ G + RI++DP + DS
Sbjct: 181 RLRHRFMGIMVGANTLVMDNPRLNARIEGGNDPF--RIVIDPELIVPSDSNFASMKDGKS 238
Query: 245 VIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+I+ +E + V L R + D + +L + + S+L+EGG+ +
Sbjct: 239 IIVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKISDILKKVGELKIDSVLLEGGSYLISK 298
Query: 302 FINSRLVDSIILYRSQIVIGE-GGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+D ++ + ++G+ GIP + V+ + +G+++ +E+
Sbjct: 299 AFEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIEEAFELKNVKFNQYGNNISVEFYK 358
Query: 357 K 357
Sbjct: 359 D 359
>gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9]
gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9]
Length = 383
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 109/376 (28%), Positives = 165/376 (43%), Gaps = 22/376 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D R+M+ AL+ +R + T+ NP V C++V DG V G G G PHAE AL
Sbjct: 2 FSADDHRYMARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHALAM 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA +++ G+ RVV + DP+ V+G+G+ L+
Sbjct: 62 AGERARGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + L+ +++R R +T+K+ +S D +A S ITG ++
Sbjct: 122 GIECASGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPE-----------LTCRLNGLQEHSPMRIILDPHFKL 230
V RA D IL G GTV AD+P+ + + ++
Sbjct: 182 DVMRQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRV 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVG 284
+D A + DL LL L
Sbjct: 242 IVDGAGTLDPDAAIFCGAPVRMYTAATTPATGRLHGHTVVSLPGADGRVDLAALLADLGR 301
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMC 340
GV + E G +A + +++ LVD ++ Y + +V+G PL + +
Sbjct: 302 LGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGHSARGMFDLPPLAALADKSCWRW 361
Query: 341 VRRDYFGSDVCLEYIG 356
G+D+ L
Sbjct: 362 HDVRSVGNDLRLTLRP 377
>gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193]
Length = 357
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 133/356 (37%), Positives = 189/356 (53%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL R G NP+V C++V++G ++GRG T GG PHAEV AL +AG+ ARGA
Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVLVREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TA+VTLEPCSH+G++PPCAQ +I+ GI R+V V D D RVSG+G + L Q GI V+ +
Sbjct: 61 TAFVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEVGV 120
Query: 131 ESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
SE HA + E+ R +TLK+A S D I S ITG ++ VH +RA+
Sbjct: 121 LSEEAARDHAGFFYKTEQGRPFVTLKMASSFDGRIATGTGQSKWITGPEARRAVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT ADDP LT R + H P+R+++ H L L S++ +A P+ +
Sbjct: 181 HDAVVVGAGTARADDPSLTVR-DLGVAHQPVRVVISRHLDLPLISQLATSASKVPLWLCH 239
Query: 250 ENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + D +L L G+T + EGG+A+A S +
Sbjct: 240 GQGADVERKQAWEGLGARLLPCASRGVQLDPHDVLQQLGAAGLTRVFCEGGSALAASLLA 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD +I + + + IG G+PS L F + G+DV +
Sbjct: 300 FDLVDELIGFTAGLGIGAEGLPSIGALGLHRLEAANRFDLIETCPVGADVMHRWRR 355
>gi|282850242|ref|ZP_06259621.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
17745]
gi|282579735|gb|EFB85139.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC
17745]
Length = 403
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 180/391 (46%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 2 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI
Sbjct: 62 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V E + T + +TLK A+S D I + S IT S+ H
Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+LVGIGT+LAD+P+L CR + H P IILD
Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALA-----------------FRKKNINIIYCD 271
+ S++ + I V++ A K +I
Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 301
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG +
Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + +++ +E +
Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392
>gi|328675280|gb|AEB27955.1| Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Francisella cf. novicida 3523]
Length = 355
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 104/323 (32%), Positives = 159/323 (49%), Gaps = 5/323 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALSLANRGRLTVSPNPMVGCIIVKNGTIISEGWHETVGKAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G++A+GAT YVTLEPC H+GR+PPC +I+ GI++VV+ DP+ +V+G+G++ L
Sbjct: 61 VGDKAKGATVYVTLEPCCHHGRTPPCTDTLIKAGIKKVVIATLDPNPKVAGKGVKKLKDA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D + + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQKTKKPFVYAKWAMSLDGKVAVNNDDSKKISSHQAFI 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T+ D+P L R+N + P R IL H + +
Sbjct: 181 NTHQLRNICDAILIGKQTLTDDNPSLDVRININKIKHPTRFILSNHLTTINHNWQVLDQS 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I + L + + + L LL + G+TSLLVEGG+
Sbjct: 241 HAKTIFICSKISAQIATKLNQLGIEYWLLPQSQNQVCLNTLLEKMGNIGITSLLVEGGSK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVI 320
+SFIN +LV+ Y + ++I
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323
>gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis RibD oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein
[Xanthomonas albilineans]
Length = 369
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 123/352 (34%), Positives = 182/352 (51%), Gaps = 9/352 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D R+M+ ALR + T NP V C+IV+D +G G G PHAEV A
Sbjct: 1 MSGFSAADHRWMAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVVV + DP +V+G G L
Sbjct: 61 LRAAGEYARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V ME + + +L+R R + +K+ S D +A S ITG
Sbjct: 121 REAGIAVQSGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKII 237
++ V RA++ AIL G GTVLADDP LT RL E P+R++LD + ++
Sbjct: 181 ARQDVQRWRARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRT--LARSK 238
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
AP + + L + ++ DL +L +L RG+ + VE GA
Sbjct: 239 VRDGAAPTLYLHAPASVPPTLPNAEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGAT 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKN--FMCVRRDY 345
+ + + + +VD +++Y + +++G+ P + L+ L + +
Sbjct: 299 LGGALLRAGMVDEVLVYLAPVLLGDAARPLLAGLQIDTLAQRCPLQLLDVRQ 350
>gi|325846504|ref|ZP_08169419.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481262|gb|EGC84303.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 359
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 156/353 (44%), Gaps = 10/353 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M ++ G T NP V ++VKDG +I G G HAEV E
Sbjct: 3 DKYYMKKCFDLAKNARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI V
Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+E EGK + R I LK A + D I S I+ S+ VH
Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR DAI+VG T++ D+P L R+ P+R+I+D + ++ + K K L
Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIEN--GIDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + DL+ L+ L + S+LVEGG+ + + F+
Sbjct: 239 KKTYIATCKDTDNPDLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDFLEE 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
LVD I + S +IG SP ++K F F D+ +E
Sbjct: 299 GLVDKIYEFISPQIIGGFNSKSPFYGRGVDKIKDGYKFEIEDVKRFDDDIMIE 351
>gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
Length = 373
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 179/365 (49%), Gaps = 19/365 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T NP V C++VK+G VIG G T G HAE+QAL++
Sbjct: 2 FSQTDFVHMERALALAWRGLYTTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + +GATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ RVSGRGL L
Sbjct: 62 ARKRGHDLQGATAYVTLEPCSHFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSML 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V +E++ + +++R R + +K+A S D G+ S IT
Sbjct: 122 REAGIEVRCGLLENDARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++N H RA++ AIL GIGTV D+P +T R P R+++D ++ D++I+
Sbjct: 182 ARNDGHAWRARASAILTGIGTVKEDNPRMTVRAVD-TPRQPHRVLIDSQLEVPPDAQILA 240
Query: 239 TALLAPVIIVTENDDP-------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
AP ++ P VL + DL ++L L R V L
Sbjct: 241 G---APTLVFCSTLSPLLTERAAVLHDRGAEIVPLANENGKVDLPRMLEELGKREVNELH 297
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFG 347
VE G + S + VD +++Y + ++G + D G
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYVAPSLLGNDSMSMFNLAAPGSLDARTQLEFHAVDRIG 357
Query: 348 SDVCL 352
SDV +
Sbjct: 358 SDVRI 362
>gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
Length = 378
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 115/362 (31%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLTARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + DL +L L RG+ L VE
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|294791895|ref|ZP_06757043.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
gi|294457125|gb|EFG25487.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27]
Length = 404
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 180/391 (46%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 3 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI
Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V E + T + +TLK A+S D I + S IT S+ H
Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+LVGIGT+LAD+P+L CR + H P IILD
Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALA-----------------FRKKNINIIYCD 271
+ S++ + I V++ A K +I
Sbjct: 243 RTPTTSRVFEINNCKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 302
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG +
Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 362
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + +++ +E +
Sbjct: 363 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 393
>gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
TXDOH]
Length = 378
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLTARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|118496729|ref|YP_897779.1| pyrimidine reductase/pyrimidine deaminase [Francisella tularensis
subsp. novicida U112]
gi|194324036|ref|ZP_03057811.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
novicida FTE]
gi|208780000|ref|ZP_03247343.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
gi|118422635|gb|ABK89025.1| pyrimidine reductase/pyrimidine deaminase [Francisella novicida
U112]
gi|194321933|gb|EDX19416.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
novicida FTE]
gi|208744004|gb|EDZ90305.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG]
Length = 355
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 171/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
Length = 383
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 117/376 (31%), Positives = 178/376 (47%), Gaps = 21/376 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++S A + +R T NP+V C+IVKD VIG G G HAE+ AL AG
Sbjct: 7 PEDIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINALSVAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A+GATAYVTLEPCSHYGR+PPC +I+ GI+RVVV + DP ++GRG+Q L Q GI
Sbjct: 67 NFAKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGI 126
Query: 125 IVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V + SE + ++ R I LK+A S D + M+ S IT S+ V
Sbjct: 127 LVSHSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL------------QEHSPMRIILDPHFKLS 231
RA+SD IL TVL D+P L R + Q P+R+I+D ++
Sbjct: 187 QCFRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIIDSTNRIL 246
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL----VGRGV 287
+ I+ ++ + +++ + I+ + L ++ +
Sbjct: 247 PTHRFIQNEGGVILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKLMQYLACYLKI 306
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343
S+ VE G ++ + ++ LVD +ILY++ +G P L + K F +
Sbjct: 307 NSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKPLCLLPNLNKLSDIKTFKLIDI 366
Query: 344 DYFGSDVCLEYIGKNL 359
G D+ L +
Sbjct: 367 TSIGPDIRLILQPNTV 382
>gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
23344]
gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
4]
gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10229]
gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10247]
gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
10399]
gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
2002721280]
gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
23344]
gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10229]
gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10247]
gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
2002721280]
gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
10399]
gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
4]
gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
Length = 380
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|254507822|ref|ZP_05119952.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
gi|219549195|gb|EED26190.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16]
Length = 368
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 9/360 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP + D MS A+ ++ + T+ NP+V C+I ++G ++G G G PHAEV A
Sbjct: 1 MPQFTETDFNMMSRAIWLAKGGIYTTAPNPNVGCVITQNGDIVGEGFHYRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L
Sbjct: 61 LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQML 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ + + I L+ ++++ + LK+A S D +A S IT
Sbjct: 121 RDAGIEVEVGLLEQDAIALNPSFIKRMQTGLPFVQLKMAASLDGQTALANGKSQWITSEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS AIL TV+ D+ L+ R + L E + + + + + +
Sbjct: 181 ARRDVQRYRAQSGAILSTSKTVIEDNASLSVRWSDLPESVKAQ-YSESQLRQPVRVILDR 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGA 296
L + + + L + + D + + T+ + + VE GA
Sbjct: 240 QNQLTSELKLFQAGGETLIVGPEGDVEMTLNADQQISLQDTFATLASAHNINHIWVEAGA 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A S + LVD +++Y + ++G LE + G D+ +
Sbjct: 300 TLASSLLQQDLVDELVIYLAPKIMGSDGRGLLGALGLESMSDVIDLDIKDVRQVGKDIRI 359
>gi|121602090|ref|YP_988935.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
KC583]
gi|120614267|gb|ABM44868.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis
KC583]
Length = 374
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 152/375 (40%), Positives = 219/375 (58%), Gaps = 12/375 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56
M + D RFM+AA+R + HVGLT+ NPSV LIV++ ++G GVTA G PHAE
Sbjct: 1 MNKKAQDCRFMAAAIRLAERHVGLTNENPSVGALIVRNDSTGPFIVGYGVTALRGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
VQAL+ AG ++GATAY+TLEPC HYG++ PC +I+ GI RVV+ + DPD RV GR +
Sbjct: 61 VQALQMAGPLSKGATAYITLEPCVHYGKTSPCVDSLIDAGIARVVIALIDPDERVCGRSI 120
Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L I V + + E E L AYL + KR +TLK+A+S DN +G G G V I+
Sbjct: 121 ALLQAADIEVVKGVLEKESSEMLSAYLCTKKLKRCEVTLKMAISADNGVGKKGQGGVKIS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G S H+LRAQ +AI+VGI T+LADDP+LTCRL GL+ SP+R+ILD ++ +D+K
Sbjct: 181 GATSHTYTHILRAQHNAIMVGIRTILADDPQLTCRLQGLEMRSPIRVILDKDLRIPMDAK 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTS 289
+I+TA P ++ + + + + + + +L +L G+ S
Sbjct: 241 VIQTATQVPTWVICDATLSNQSKKMKLEQYGVCVHSIEISNNFMQPLAILQLLCQLGINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+EGGA F+N+ VD +I + + +++GE I +P E YL F + +D
Sbjct: 301 VLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLS-EFNEIETKMLEND 359
Query: 350 VCLEYIGKNLCLQEL 364
+ K LC Q L
Sbjct: 360 RLRRWRRKILCSQGL 374
>gi|316934111|ref|YP_004109093.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
DX-1]
gi|315601825|gb|ADU44360.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
DX-1]
Length = 389
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 154/360 (42%), Positives = 203/360 (56%), Gaps = 12/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM AL R G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE
Sbjct: 27 DQRFMQLALALGRRGQGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAGEA 86
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+GRSPPCA I+ GI RVV ++DP+ V+G+G L GI V
Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIVAAGIARVVSAIEDPNPLVAGQGHAKLRAAGIAV 146
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + ++ HA R +R H+TLK+AVS D I AG V ITG + + HL
Sbjct: 147 EIGICADEATHDHAGHLCRISARRPHVTLKLAVSADGKIAAAGHKQVAITGEAANARTHL 206
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A +
Sbjct: 207 LRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPSASKLVHSARTTSL 266
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL-------KKLLTILVGRGVTSLLVEGGAAV 298
++ A + +L L +GVT LLVEGGA V
Sbjct: 267 WLMASEIADAATAARLGAAGAEVVHVADCAAAPGLDLPAVLHALSDKGVTRLLVEGGARV 326
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +F+ R D I L+RS+ IG G+ + PL ++ + GSD Y
Sbjct: 327 AAAFVTQRRADEIRLWRSETTIGPDGVDALAGLPLAAITDSPHWRVRSSERVGSDTLTIY 386
>gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
YK9]
gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus
YK9]
Length = 373
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 124/371 (33%), Positives = 185/371 (49%), Gaps = 12/371 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M DA +M AL+ ++ G TS NP V C+IVK+G +IG G G HAEV AL
Sbjct: 1 MSEVLNDAFYMRLALQMAQGATGQTSINPVVGCVIVKEGRIIGMGAHLKRGEGHAEVNAL 60
Query: 61 EEAGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG+EA GATAYVTLEPC + ++PPC +IE I RVVV DP+ +V+G G++ L
Sbjct: 61 RMAGDEAEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKL 120
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + +E Y + + +TLK A + D I S ITG
Sbjct: 121 RAAGIAVSVGLLAEESHAMNERYNKYILSRLPFVTLKTASTLDGRIAAKTGDSRWITGPA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH +R Q D I+VGIGT+LADDP+LT R + P RII+D ++ LD++++
Sbjct: 181 SREAVHTMRHQHDGIMVGIGTLLADDPQLTTR-LEVPALHPARIIVDSALRIPLDARVVT 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGG 295
+ +++ T +P + + + I+ C L + G + S+L+EGG
Sbjct: 240 DGMARTIVLTTTAANPEKRSSLQAAGVEIVDCGDGPHVNLTEAMRLLGDMEIGSILLEGG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------PLEEGYLEKNFMCVRRDYFGSD 349
+ + + + LVD I L+ + +IG G E+ R + +G D
Sbjct: 300 GQLNGAMLAAGLVDKISLFFAPKLIGGGEASPAAFVFEGFEKMADAITLESTRYEQYGDD 359
Query: 350 VCLEYIGKNLC 360
+ + N
Sbjct: 360 IAVIGYPSNRL 370
>gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena
XCL-2]
gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Thiomicrospira crunogena XCL-2]
Length = 391
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 125/376 (33%), Positives = 189/376 (50%), Gaps = 21/376 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD + M A+ +R + T NP+V C+I + +I G G PHAE AL
Sbjct: 9 FSDFDVQMMQRAIDLARKGLYSTKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALAN 68
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E +GAT YVTLEPCSH+G++PPCA +++ G+ RVV+ + DP+ V+G G++ L Q
Sbjct: 69 ATESVKGATVYVTLEPCSHHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQA 128
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI+VD + SE L+ +++ R + LK+A S D MA S ITG +++
Sbjct: 129 GIVVDSGILSEEAAALNKGFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARH 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG---------LQEHSPMRIILDPHFKLSL 232
QVHL+RAQ AI+ G+GTVLADDP L RL+ + P+R++LD + L
Sbjct: 189 QVHLMRAQHGAIVTGVGTVLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPL 248
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-------NIIYCDCRDLKKLLTILVGR 285
D+K++ ++ E D L L R L ++
Sbjct: 249 DAKMLSLPGRTLLMTSKETVDQNLDLIERFYQKGAEVIAVESDGDKLDIPSVLSYLVESE 308
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCV 341
+ ++VE GA VA +FI + +V+ + ++ + I++GE P L E +K F
Sbjct: 309 NIYDVMVEAGAIVAGAFIQADVVNELHVFTAPILMGEMAKPMFVLPGLTEMADKKVFAYQ 368
Query: 342 RRDYFGSDVCLEYIGK 357
G D+ L K
Sbjct: 369 SVQALGEDLYLVLTPK 384
>gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
OX99.30304]
Length = 369
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 185/366 (50%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGKN 358
+ +
Sbjct: 361 VFRKND 366
>gi|121634268|ref|YP_974513.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis FAM18]
gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis FAM18]
gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha153]
gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190]
gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
ES14902]
Length = 369
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGKN 358
+ +
Sbjct: 361 VFRKND 366
>gi|294793755|ref|ZP_06758892.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
gi|294455325|gb|EFG23697.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44]
Length = 403
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 121/391 (30%), Positives = 180/391 (46%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 2 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + G
Sbjct: 62 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIK 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V + E + T + +T+K A+S D I + S IT S+ H
Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+LVGIGT+LAD+P+L CR + H P IILD
Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLAL-----------------AFRKKNINIIYCD 271
+ S++ + I V++ K +I
Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQVLEQVGAQVTVVESISTRKSKSTDIVIDIK 301
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG +
Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + +++ +E +
Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392
>gi|218767600|ref|YP_002342112.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis Z2491]
gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis Z2491]
Length = 369
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|15805190|ref|NP_293877.1| riboflavin-specific deaminase [Deinococcus radiodurans R1]
gi|6457821|gb|AAF09742.1|AE001878_1 riboflavin-specific deaminase [Deinococcus radiodurans R1]
Length = 357
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 120/354 (33%), Positives = 177/354 (50%), Gaps = 16/354 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV----IGRGVTAYGGCPHAEVQALEE 62
DA +M AL + +G TS NP V C+IV+DG + +GRG G PHAEV AL E
Sbjct: 8 DAEYMQLALNEAAKGLGRTSPNPPVGCVIVRDGEIASEIVGRGFHPKAGEPHAEVFALRE 67
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ +V+GRGL+ L
Sbjct: 68 AGERARGATAYVTLEPCSHDGRTPPCADALIAAGVARVVVAAGDPNPQVNGRGLEKLRAA 127
Query: 123 GIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + A R H+ K A++ D + G+ P++G ++
Sbjct: 128 GIEVATGVLEAAAVRQQAGFRSLVTRGRPHVIYKYAMTLDGKVAALNEGNGPVSGPEARA 187
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+V R + DA+ VG T L D+P+L R P ++ DP L ++
Sbjct: 188 RVMAWRNEVDAVAVGARTALLDNPQLNVR-GLDGGRDPRAVLFDPEGHLPASAR---AVR 243
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V+++ E L R ++ L L G GV +LL+EGG +A +
Sbjct: 244 EGTVLVLREGRSTPLERDPRVTVLHAHSLQG-----ALEQLAGLGVATLLLEGGPTLASA 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
F + L+D + ++ + ++G G P +P+ + R + G+DV +
Sbjct: 299 FFEAGLIDELRVFVAPKLLGAGLSPLLAPVRSMHAATELAVERVEVVGNDVLVI 352
>gi|187930956|ref|YP_001890940.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711865|gb|ACD30162.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 355
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 170/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWQVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
Length = 373
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 107/361 (29%), Positives = 165/361 (45%), Gaps = 12/361 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL +R T NP+V C+IVKD ++G G G PHAEV AL +AG
Sbjct: 8 KHDHLYMHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAG 67
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+A+ ATAYVTLEPCSH GR+PPC +I + RVV+ + DP+ VSGRG+ L I
Sbjct: 68 TQAKHATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADI 127
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + L+ +++ + ++ +K+A S D ++ S ITG ++ V
Sbjct: 128 EVRVGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADV 187
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP------HFKLSLDSKII 237
+ RAQ+DAIL G TVL D+P L R + K + +
Sbjct: 188 QVWRAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLR 247
Query: 238 KTALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ PV +V + P + DL L L R + + E GA
Sbjct: 248 LFEVETPVFVVRTTEAPASRHRHCHEIIAKADSQGRVDLHDALKELALREINLVWTECGA 307
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A + N+++V+ ++ Y++ V+G L + +F + R G D+ +
Sbjct: 308 QLAGALFNAQVVNELVYYQANKVLGSDARSMIALQELTQLDDALSFNVLERRMVGEDIRV 367
Query: 353 E 353
Sbjct: 368 I 368
>gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
7894]
gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
BCC215]
gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
Length = 378
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
Bath]
gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
Bath]
Length = 378
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 111/363 (30%), Positives = 175/363 (48%), Gaps = 9/363 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D FM+ ALR + + T NP V ++V+ V+G G G PHAE+ AL
Sbjct: 13 SWSPEDHCFMAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALR 72
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+A A GAT YVTLEPCSH+GR+PPCA +IE G+ RVV + DP+ RV+G+GL+ L +
Sbjct: 73 DARGRAAGATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRR 132
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + L+ +++ + K+A+S D +A S ITG ++
Sbjct: 133 AGIEVSCGLLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAAR 192
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH LRA+S I+ GIGT+ ADDP LT + + P R+ILD + ++++ +
Sbjct: 193 RDVHRLRARSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQ 252
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGA 296
V+ + AL + + D + ++ G +L E GA
Sbjct: 253 PGRTLVLTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEAGA 312
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
++ + +++ +VD ++Y + V+G+ L V GSD+ L
Sbjct: 313 SLNGALLSAGVVDEWVVYLAPCVLGDEARGLFRLPGLAGMADRPELAIVDARRVGSDMRL 372
Query: 353 EYI 355
Sbjct: 373 ILR 375
>gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
112]
gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1655]
gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1655]
gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
Length = 380
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase,
reductase [Burkholderia pseudomallei K96243]
gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
DM98]
gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14]
gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9]
gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
B7210]
gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
NCTC 13177]
gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
406e]
gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase,
reductase [Burkholderia pseudomallei K96243]
gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
406e]
gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
Length = 378
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|253990958|ref|YP_003042314.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica]
Length = 362
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 169/361 (46%), Gaps = 16/361 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R TS NP+V C+IV+DG ++G G G PHAEV AL AG++A+G+
Sbjct: 1 MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMAGDKAKGS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V+ +
Sbjct: 61 TAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVEHGL 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R +I LK+A S D +A S IT S+ V LRAQ
Sbjct: 121 MMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS----------LDSKIIKT 239
AIL TVLADDP LT R + L + + + + + + +
Sbjct: 181 CSAILSSSNTVLADDPYLTVRWSELDAETQA-VYPEENLRQPVRVIVDSQNRVVQQHQVI 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ D ++ + + DL L+ L R + ++ VE G +A
Sbjct: 240 QQPGHCWLARTKADGDNWPENVEQILLPAHGVGVDLVLLMMQLGKRQINTVWVECGPLLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + LVD ++LY + V+G+ L+ F G D+ L
Sbjct: 300 GALLTLGLVDELVLYVAPKVLGDTACGLFTIPELKSLVKAPEFDIFDIQQIGPDLRLRLR 359
Query: 356 G 356
Sbjct: 360 P 360
>gi|114562213|ref|YP_749726.1| riboflavin biosynthesis protein RibD [Shewanella frigidimarina
NCIMB 400]
gi|114333506|gb|ABI70888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella frigidimarina NCIMB 400]
Length = 381
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 21/376 (5%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+FD + MS A+ + T NP V C+IV +IG G G HAEV A
Sbjct: 1 MSNWSTFDTQMMSRAIALAEKGRYTTRPNPCVGCVIVYQNKIIGEGYHQRAGQGHAEVNA 60
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L+ G A GATAYVTLEPCSHYGR+PPCA +I + RVVV V D + VSGRG+
Sbjct: 61 LKMVHDNGLSAEGATAYVTLEPCSHYGRTPPCALGLINAKVARVVVAVTDANPEVSGRGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPIT 175
L + G+ VD + E L+ ++++ IT+KIA S D ++ S IT
Sbjct: 121 TLLREAGVEVDVGLLCEQAYDLNLGFMKRMKTGLPWITVKIAASLDGKTALSNGVSKWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELT----------CRLNGLQEHSPMRIILD 225
G ++ V RA A++ G+ T+L DDP L R + P+R++LD
Sbjct: 181 GSAARADVQKYRASHCALITGVETILVDDPSLNVRYETLGELTTRHTKDEFFQPLRVVLD 240
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+L+ ++ ++ + V A + + CD LL +L
Sbjct: 241 SRARLTATQQLFSIQSPILLVSGCHYPESVKAEFPEHVSFLQLTCDSSGRIPLLALLTYL 300
Query: 286 G--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFM 339
G S+L+E GA +A +F+ LVD ++LY++ ++G G
Sbjct: 301 GQHANSVLIEAGATLAGAFVAQGLVDEVVLYQAPKILGSHGRNMLQLPDYSTMEQTPALQ 360
Query: 340 CVRRDYFGSDVCLEYI 355
+ G D
Sbjct: 361 LIDERNVGQDKRYILR 376
>gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
MSMB43]
Length = 374
Score = 209 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 173/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPC+ +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ A+L GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 AREDGHKWRARACAVLTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEG 294
L ++ A A R + I+ DL +L L RG+ L VE
Sbjct: 241 GGSLLIFCGALDSQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
AHT2]
gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus
AHT2]
Length = 368
Score = 209 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 180/365 (49%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
VS+ D +M AL +R VG TS NP V ++VKDG V+GRG G PHAE+ AL
Sbjct: 2 VSATDQAYMKMALELARKGVGKTSPNPCVGAVLVKDGQVVGRGWHRRAGEPHAEINALAA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A GAT YVTLEPC+H GR+PPC++ I GIRRVV + DP+ G G +
Sbjct: 62 AGDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDPNPVAGGGGAYLAGRG 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
++ ++ + + + R + LK AVS D I A S ITG ++ Q
Sbjct: 122 LEVLAGVLADDCRRLNLPFSKRVTTGYPWVQLKAAVSLDGRIAAATGRSKWITGEQARRQ 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR SDAILVG GTVLADDP LT R + P+R+ILD +K++
Sbjct: 182 VHRLRCLSDAILVGSGTVLADDPSLTTR-LPGKGRDPLRVILDSKLATPPAAKVVAHDSA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGA 296
A I D ++ ++ L ++L L GVT+LLVEGG
Sbjct: 241 AATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTLRLVEVLEHLGRAGVTTLLVEGGG 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
V SF+ L D +I + + +++G G+ + L + + R G D+ +
Sbjct: 301 RVHGSFLRRGLADEVIFFIAPLLLGGDGMAAVSELGLADPSQAPRLHEIERRRCGDDLMI 360
Query: 353 EYIGK 357
+
Sbjct: 361 RGRLR 365
>gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
str. 28L]
gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1
str. 28L]
Length = 378
Score = 209 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 14/362 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL ++ +G TS NP V C+IVKDG ++G G G PHAEV AL+EAG+ A
Sbjct: 5 EYMKKALALAKIALGYTSPNPVVGCVIVKDGEIVGTGYHHQAGAPHAEVLALQEAGDRAT 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YVTLEPC+HYGR+PPCA+ +++ I++VV+ + DP+ V+G+G L Q GI+V+
Sbjct: 65 GATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGIVVEV 124
Query: 129 MMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ S + L+ + + I +K+A S D I S IT S+ LR
Sbjct: 125 GLLSAEAVKLNEVFIKNMLSNIPFIAIKLAQSLDGCIATRTGHSQWITNAWSRQYGQYLR 184
Query: 188 AQSDAILVGIGTVLADDP---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ D ILVGI T+L D+P R H P+RI+LD + + L S+++
Sbjct: 185 SIYDGILVGINTILEDNPLLTCRVRREGQAVPHQPIRIVLDTYGRTPLSSQVVNDKTART 244
Query: 245 VIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+I+ T A C DL L +L G+ S+LVEGG+ +
Sbjct: 245 IIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCVDLHAALQLLRQEGIGSILVEGGSTIH 304
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
SF +++LVD I + +IG + ++ + ++ ++
Sbjct: 305 GSFFDAKLVDKIYAFLGNSIIGGTCALCSVAGEGVDGLEECVPLHYDSIEIHDDNILIQA 364
Query: 355 IG 356
Sbjct: 365 YN 366
>gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240149]
Length = 369
Score = 209 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL +L+ +L G ++VE GA
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G DV
Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
Length = 361
Score = 209 bits (530), Expect = 9e-52, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 174/360 (48%), Gaps = 15/360 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL +R + T NP V C+IV G ++G G G PHAEV AL +AGE ARGA
Sbjct: 1 MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQAGETARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPCA+ ++ G+ RVV + DP+ +VSGRGL L Q GI V+ +
Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVEVGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + ++ R + +K+A+S D MA S ITG ++ V LRA+
Sbjct: 121 LEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRLRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
S +L G TVL D LT R L + P+R+++D ++ LD
Sbjct: 181 SSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLD-VPFFQ 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
A A V V+ + A + DL LL L RG +LVE G +A
Sbjct: 240 AGPALVATVSAEREVDYRAAGHELLAVPGEDGRVDLPALLAELAARGANEVLVEAGPRLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F LVD L+ + +G P PLE + G D + +
Sbjct: 300 GAFARQGLVDEYRLFVAPKFLGSTARPLLELPLERMAEARELKIRDIRAVGEDWQIVAVP 359
>gi|56708681|ref|YP_170577.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671153|ref|YP_667710.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis FSC198]
gi|134302741|ref|YP_001122709.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224457890|ref|ZP_03666363.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371312|ref|ZP_04987314.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254875556|ref|ZP_05248266.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56605173|emb|CAG46304.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321486|emb|CAL09687.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis FSC198]
gi|134050518|gb|ABO47589.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569552|gb|EDN35206.1| hypothetical protein FTBG_01094 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841555|gb|EET19991.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159932|gb|ADA79323.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
tularensis NE061598]
Length = 355
Score = 209 bits (530), Expect = 9e-52, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 170/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|89255521|ref|YP_512882.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
holarctica LVS]
gi|115314040|ref|YP_762763.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Francisella tularensis subsp. holarctica OSU18]
gi|156501455|ref|YP_001427520.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010294|ref|ZP_02275225.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp.
holarctica FSC200]
gi|254366949|ref|ZP_04982986.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
holarctica 257]
gi|254368485|ref|ZP_04984502.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
holarctica FSC022]
gi|290954250|ref|ZP_06558871.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
holarctica URFT1]
gi|295312314|ref|ZP_06803101.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
holarctica URFT1]
gi|89143352|emb|CAJ78519.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
holarctica LVS]
gi|115128939|gb|ABI82126.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Francisella tularensis subsp. holarctica OSU18]
gi|134252776|gb|EBA51870.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp.
holarctica 257]
gi|156252058|gb|ABU60564.1| riboflavin biosynthesis protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157121379|gb|EDO65580.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp.
holarctica FSC022]
Length = 355
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 111/366 (30%), Positives = 169/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHSTRFILANHLTTINHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 365
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 131/362 (36%), Positives = 188/362 (51%), Gaps = 11/362 (3%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M VS + +M L +R G TS NP V C++VKD ++G G G PHAEV
Sbjct: 3 MKVSEKRQNEYYMRIVLSLARRGTGRTSPNPRVGCVVVKDDKIVGTGFHRCPGSPHAEVM 62
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL A + +RGAT YV LEPC HYGR+PPCA I+E GI+RV + +DP +V GRG+++
Sbjct: 63 ALSMAKDMSRGATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEY 122
Query: 119 LSQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L G +V ++ E + +L E R ITLK A+S D + ++ S ITG
Sbjct: 123 LRSHGVEVVSGVLSDEARWLNRGFLKVFEEGRPWITLKAAMSLDGDVALSDGSSRWITGR 182
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S + HLLRA++DA+LVGIGT+L DDPELT R P++IILD H ++ +++K+
Sbjct: 183 SSLKRSHLLRAEADAVLVGIGTILKDDPELTVRYVE--GEHPLKIILDTHLRIPINAKVF 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEG 294
K + V + V + R + I D R + ++ V LLVEG
Sbjct: 241 KEGDVLVVTSKGSSPQKVEEIISRGAGVMQIPTDSRGFLDIKEMVCKLPSMDVHYLLVEG 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLE--KNFMCVRRDYFGSDVC 351
G V SF +++L D + L+ + ++G G S L + D+
Sbjct: 301 GPNVLSSFFDAKLFDEMALFYAPKIMGRGKGAFSGLSLMSMSEIPIGRIRGMKKLDDDLF 360
Query: 352 LE 353
LE
Sbjct: 361 LE 362
>gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii
CaD3]
gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chlorobium chlorochromatii CaD3]
Length = 366
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 111/365 (30%), Positives = 174/365 (47%), Gaps = 17/365 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL + G S NP V L+V++G +IG G G HAEV A+ E
Sbjct: 6 HTFYMQRALELALRGAGRVSPNPMVGALLVQEGEIIGEGWHERYGEAHAEVNAIAAVTNE 65
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
R AT YVTLEPCSH+G++PPC+ II I RVVV DP V+GRG+ L GI
Sbjct: 66 AWLREATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAKLRAAGI 125
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E+E A++ +TLK+A + D + S ITG ++ +V
Sbjct: 126 EVIEGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLDGKLATVTGASRWITGEEARAEV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR+ DA+LVG T LAD+ +LT R +P+R++LD +L L+S I
Sbjct: 186 HRLRSVYDAVLVGGATALADNSQLTVRQAN--GRNPLRVVLDRSLQLPLESLIFNHEAPT 243
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299
+ A +K +++ L+++L L R + S+LVE G+ +
Sbjct: 244 LLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQLREVLEELHHRHILSVLVESGSRLG 303
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + + VD ++++ + + G G+ + + + + F +FG D+ LE
Sbjct: 304 AALLQAGFVDKLLIFIAPKLFGGDGLSAFAPLGVTVPDEAIALRFELP--RFFGKDLLLE 361
Query: 354 YIGKN 358
+
Sbjct: 362 AYINS 366
>gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
Length = 359
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 121/362 (33%), Positives = 178/362 (49%), Gaps = 17/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AGE ARGA
Sbjct: 1 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAGERARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI V +
Sbjct: 61 TAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVASGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E + ++ R ++ K+A+S D MA S ITG ++ +V LRA+
Sbjct: 121 LEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRLRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239
S +L G TVL D LT R L + P+R+++D ++ LD+ +
Sbjct: 181 SSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPFFQA 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V +V ++ ++ + DL LL L RG +LVE G +
Sbjct: 241 GPALVVTVVAGCEETYRRAG---HEALVLGQERVDLTSLLRELAARGANEVLVEAGPRLV 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F + L+D L+ + +G P PLE + V G D +
Sbjct: 298 SAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDDWKILARP 357
Query: 357 KN 358
N
Sbjct: 358 AN 359
>gi|328676184|gb|AEB27054.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Francisella cf. novicida Fx1]
Length = 355
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 172/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYGKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLNVRININKIKHPTRFILANHLTTINHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YKPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245]
Length = 372
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 114/361 (31%), Positives = 168/361 (46%), Gaps = 13/361 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
+M + G S NP V C+IV G VIG G G PHAEV A+
Sbjct: 12 HEHYMQRCHELALMGSGAVSPNPMVGCVIVSGGQVIGEGFHRQYGGPHAEVNAVASVADR 71
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E R AT YV LEPCSH+G++PPC+ I+E GI RVV+ DP ++V+G+G+ L G+
Sbjct: 72 ERLRNATLYVNLEPCSHFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGV 131
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E+E + A++T + R + LK+A S D I S ITG ++ +V
Sbjct: 132 EVIEGVLETESERLNEAFITVHRKGRPFVALKLAQSLDGKIATVSGASKWITGEEARTEV 191
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR DA+L G TV+ADD LT R +P+R++LD + + + I T
Sbjct: 192 HRLRCSFDAVLTGAATVIADDSRLTVRHCA--GRNPIRVVLDSRLSIPIGAGIFDTEAET 249
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVA 299
V D A KK + + R+ +L L R + S+LVEGG +
Sbjct: 250 VVFTALSMQDSQKARQLAKKGVAVFGVAERECGLDLAAVLERLHERRILSVLVEGGGRLG 309
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
SF+ L D + ++ + ++ G G+ + + FG D+ L
Sbjct: 310 SSFVRMELFDKLYMFIAPVLFGGDGLSAFAPIGITLPEQAIRLDFEPPSRFGRDLLLTAY 369
Query: 356 G 356
Sbjct: 370 V 370
>gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
Length = 365
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 136/362 (37%), Positives = 185/362 (51%), Gaps = 11/362 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + M AL +R TS NP V C+I ++G+G G PHAEV AL +AGE
Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI
Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ +E+E + +L+R R + +K A S D +A S ITG ++ V
Sbjct: 125 TESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRA+S A+L GIGTVLAD+P L R P RI+LD + L S II L
Sbjct: 185 TLRAESCAVLTGIGTVLADNPCLNVRAFP-TLRQPARIVLDSKLQTPLGSHIISDDLSPT 243
Query: 245 VIIVTENDDPVLALAFRKKNINI-----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+I+ +D+ L +I I DL LL L G ++VE GA +A
Sbjct: 244 IIVTAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGATLA 303
Query: 300 HSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+FI S L D I+LY++ ++GEG +P+ E + + G DV
Sbjct: 304 SAFIESGLADEIVLYQAPKILGEGRNLLTLPANPAVLTSEGEWESRSVELIGQDVKWVLR 363
Query: 356 GK 357
K
Sbjct: 364 KK 365
>gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
MPA1U2]
gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis
MPA1U2]
Length = 367
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 12/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S+ D +M+ AL ++ G T NP V +IV D ++G G G PHAE+ AL
Sbjct: 1 MSNHD-FYMNLALTNAQTLKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRM 59
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ++GAT YVTLEPCSH+GR+ PCAQ II+ GI +VV+ DP+ V+G G++ L +
Sbjct: 60 AGDMSQGATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEA 119
Query: 123 GIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E I + V K +TLK A + D I S IT ++
Sbjct: 120 GIEVIVGVREEEAIKMNEVFNKFIVTKTPFVTLKAASTLDGKIATHSLDSKWITAEEARL 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VHL+R+Q AILVG+GTV+ DDPELT R++ +P+RI+LD ++ LDSK++ +
Sbjct: 180 DVHLMRSQHMAILVGVGTVIEDDPELTARISN--GRNPIRIVLDSTLRIPLDSKLVTDGI 237
Query: 242 LAPVIIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ I ++N D A + + D+ ++ L +G++SL +EGG +
Sbjct: 238 VDTWIFTSQNYDAEKRQALEELGVLIFETSHDTQVDVIDVVRTLGEKGISSLFIEGGGTI 297
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353
+F+ + L+D ++ Y + ++G P+ +E +E + G D
Sbjct: 298 NAAFLENDLIDKVVFYFAPKLVGGKLAPTFIEGTGVEWMKDAIELRDGEFSKVGKDFKFT 357
Query: 354 YIGKN 358
+
Sbjct: 358 GYPEK 362
>gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
DSM 271]
gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii
DSM 271]
Length = 373
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 14/362 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
++ D +M L +R GL S NP V +IV + V+G G G PHAEV AL
Sbjct: 8 TARDEYYMHRCLELARKGAGLVSPNPMVGSVIVVEDRVVGEGFHERYGGPHAEVNALASV 67
Query: 64 GEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ +T YV LEPCSHYG++PPC+ II IRRVVV DP +V+G+G++ L Q
Sbjct: 68 SDASLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKLRQ 127
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + + E + A++ + LK A + D I +A S +TG S+
Sbjct: 128 AGVEVTIGVLQRESEALNEAFIKSHTISMPFVVLKTAQTIDGRIAVASGESKWVTGAESR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH +R+ DA++ TV+AD+ LT R +P+R++LD ++ L S I
Sbjct: 188 REVHRMRSVHDAVMTTSSTVIADNSRLTVRHCE--GRNPVRVVLDRLLRVPLSSAIFDGE 245
Query: 241 LLAPVIIVT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ E + A+ L ++ + S++VE G
Sbjct: 246 AKTILYTSNALGSSEKARALKAMGVIVCAAGDDGDFLDLSAVLKSLHDEHALLSIMVEAG 305
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+A + I RLVD I+ + + + G G+ + L+ + G+D+C
Sbjct: 306 GTLAGALIRHRLVDRIVWFVAPKLFGADGLGAVGSLGLQSVDDAPVMRFSSSRFLGNDLC 365
Query: 352 LE 353
+E
Sbjct: 366 IE 367
>gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 365
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 112/359 (31%), Positives = 177/359 (49%), Gaps = 9/359 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D FM+ ALR + + T+ NP V C+IV DG V+G G G HAEV AL+
Sbjct: 2 FSAADHDFMARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHALQA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A GATAYVTLEPCSH+GR+PPC + ++ G+ RVV + DP+ +V+G GL L
Sbjct: 62 AGEKAAGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAA 121
Query: 123 GIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ + + + ++ R R + LK+A S D + S +TG ++
Sbjct: 122 GVRAECGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQ 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIK 238
H RA++ AIL GIGTV DDP+L R P+++++D +LS D+++++
Sbjct: 182 DGHRWRARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLR 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAA 297
+ + + + + + R LL L RG+ + E G A
Sbjct: 242 DGQVLVAAALVDRAKVDALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEAGFA 301
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
+ S +++ LVD ++LY + ++G+ PL + G D+ L
Sbjct: 302 LGGSLLDAGLVDELLLYLAPCLVGDAARGMFDLPPLASLAGRRRLSIRDLRSVGPDLRL 360
>gi|260441248|ref|ZP_05795064.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae DGI2]
gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
Length = 369
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 188/365 (51%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L DS+++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPDSRLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
+I E ++ L + ++ I+ DL +L+ +L G G ++VE GA
Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGA 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIG-EGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 KLTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont]
Length = 367
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 174/367 (47%), Gaps = 18/367 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+
Sbjct: 3 DAHYMARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMAGDH 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 ACGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ L+ R I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKLSLDS 234
LRA+S AIL TVLAD+P LT R N Q P+R+++D +++
Sbjct: 183 LRARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQH 242
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++I ++ + + + + DL ++ +L R + S+ VE
Sbjct: 243 RLIAQPGETWLMRTEADAQS--WPSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSVWVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350
GA +A + + + LVD +I+Y ++G LE G D+
Sbjct: 301 GAGLAGALLQAGLVDELIVYLVPKLLGNAARGLCALPGLETLADAPALNFSDVRQVGDDL 360
Query: 351 CLEYIGK 357
L +
Sbjct: 361 RLILTPR 367
>gi|85715452|ref|ZP_01046433.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
gi|85697647|gb|EAQ35523.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A]
Length = 383
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 149/364 (40%), Positives = 198/364 (54%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM AL R +G ++ NP+V +IVK+G+++GRG T GG PHAE +AL AG
Sbjct: 19 AADLHFMQLALALGRRSLGASAPNPAVGAVIVKNGVIVGRGWTQPGGRPHAEAEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI
Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGKGHARLRAAGI 138
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ E +L R + R HI LK+A+S D MI AG V ITG +K +V
Sbjct: 139 SVEVGLCADEAAHHHAGHLRRVRDGRPHIILKLAMSSDGMIAAAGGIPVAITGEAAKARV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQ AILVGIGTVLADDP LTCRL G++ SP R++LD ++ S+++++A
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPMLTCRLPGMETRSPPRVVLDHALRIPESSRLVQSAHET 258
Query: 244 PVIIVTENDDPVLALA-------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ I+T + DL ++L L RGVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGVQVMRVPVAAEAPGLDLLEVLRALSERGVTRLIVEGGA 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
+A SF+ + LVD L IG+ G+ + PL F + D
Sbjct: 319 RIAASFVAAALVDEAWLLSGPDPIGDDGVAALGALPLTAITGSPRFRMRACETLDQDALA 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 372
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 114/371 (30%), Positives = 184/371 (49%), Gaps = 17/371 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D +FMS AL ++ + L++ NP V C+I K+G +IGRG T G HAEVQAL +A
Sbjct: 3 SAVDHQFMSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADA 62
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G +A G+T YVTLEPCSH G++PPC +I +V+V + DP+ V+G+GL+ L
Sbjct: 63 KARGNDATGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLK 122
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + L+ ++ + + +KIA S D + S ITG ++
Sbjct: 123 LAGIEVQYGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLA 182
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H RAQ+ AI+ G+GTV DDP L R P+R I+D + +++KI+K
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVE-TRRQPVRTIIDSKLETPINAKILKN 241
Query: 240 ALLAPVIIVTENDDPVLALA---------FRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
L+ ++IV N D A + + + + R + +
Sbjct: 242 PELSDILIVCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFG 347
+E G + S + +D ++LY + ++G+G S L + +N+ + + G
Sbjct: 302 HIEAGFKLNDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLG 361
Query: 348 SDVCLEYIGKN 358
SD+ L I +
Sbjct: 362 SDLRLRLIKNS 372
>gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 369
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 119/368 (32%), Positives = 173/368 (47%), Gaps = 18/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M+ AL +R TS NP+V C+IV DG ++G G G PHAEV AL+ AG
Sbjct: 2 NNDKKYMARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++A+GAT YVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 DKAKGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGI 121
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E L+ R +I LK+A S D +A S IT ++ V
Sbjct: 122 AVEHGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSL 232
RAQ AIL TVLADDP LT R P+R+I+D ++S
Sbjct: 182 QKFRAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSP 241
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ D ++ + + DL L+ L R + ++
Sbjct: 242 Q--HQVIQQPGYCWLARTKVDEHDLSENVEQILLPAHGIGVDLVSLMMQLGKRQINTVWT 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E GA +A + + LVD ++LY + V+G+ L+ F G
Sbjct: 300 ECGALLAGALLTLGLVDELVLYVAPKVLGDTARGLFTIPELKNLAEAPEFDIFDVQQVGP 359
Query: 349 DVCLEYIG 356
D+ L
Sbjct: 360 DLRLHLRP 367
>gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans
MPOB]
gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Syntrophobacter fumaroxidans MPOB]
Length = 363
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 124/354 (35%), Positives = 182/354 (51%), Gaps = 12/354 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M ALR + G TS NP V ++V+ + G + G PHAEV AL +AG++ARGA
Sbjct: 1 MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC+H GR+PPC + +++ G+ VV+ ++DP+ V G G +L G+ V +
Sbjct: 61 TLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGI 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E + ++ ++TLK AV+ D I + S I+ S+ H LR
Sbjct: 121 LEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSGDSKWISNERSRKFAHHLRCI 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
SD +L+GIGT LADDP L+ R+ P+RI+LD +L L+S +++TA P+++V
Sbjct: 181 SDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV 240
Query: 249 TENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
D P A + L +LL L +G+ SLLVEGGA V +F+
Sbjct: 241 CGRDAPPTREKALVDAGAEVMRLSSGKGGIHLPELLRALGSKGLCSLLVEGGATVLGAFL 300
Query: 304 NSRLVDSIILYRSQIVIGE-GGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352
++ L D + + V+G+ G P G VR FG DV L
Sbjct: 301 DNGLADDFHFFYAPKVLGDPAGTPMVRGRGRERMADAVPVFDVRVRRFGEDVML 354
>gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Neisseria meningitidis 8013]
Length = 369
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|62260407|gb|AAX77904.1| unknown protein [synthetic construct]
Length = 390
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 112/367 (30%), Positives = 170/367 (46%), Gaps = 20/367 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL
Sbjct: 26 EMKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALT 85
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 86 KAVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKN 145
Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 146 AGITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAF 205
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 206 VNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQ 265
Query: 241 LLAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
A I V L + + L LL + G+TSLLVEGG
Sbjct: 266 RHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGN 325
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 326 KTLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII---- 371
Query: 357 KNLCLQE 363
N C +E
Sbjct: 372 -NSCFKE 377
>gi|49475527|ref|YP_033568.1| riboflavin biosynthesis protein ribD [Bartonella henselae str.
Houston-1]
gi|49238333|emb|CAF27557.1| Riboflavin biosynthesis protein ribD [Bartonella henselae str.
Houston-1]
Length = 365
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 146/366 (39%), Positives = 217/366 (59%), Gaps = 13/366 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65
M+AA+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG
Sbjct: 1 MAAAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGS 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI
Sbjct: 61 LAHGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIE 120
Query: 126 VDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ++ Y + ++R +TLK+A+S DN +G G G + I+G S Q H
Sbjct: 121 VIEGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+LRAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P
Sbjct: 181 ILRAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIP 240
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ + + + + + +L +L RG+ S+L+EGG
Sbjct: 241 TWVICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKT 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K
Sbjct: 301 GEIFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKT 359
Query: 359 LCLQEL 364
LC QEL
Sbjct: 360 LCSQEL 365
>gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797]
Length = 377
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 114/363 (31%), Positives = 177/363 (48%), Gaps = 18/363 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL +R G NP+V +IV +IG G G PHAE+ AL AGE+++G
Sbjct: 14 MHRALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIHALNMAGEQSQG 73
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T YVTLEPC H G++ PC+Q +I GI++VV+ + DP V G G++ L Q GI V+
Sbjct: 74 KTIYVTLEPCCHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEELKQAGIEVEVG 133
Query: 130 MESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ L ++V + I K A++ D I S I+ S+ +VH LR
Sbjct: 134 LLESEAQALVRPFVKRVTQGLPWIHAKWAMTLDGKIATRTGHSQWISNPRSRERVHELRG 193
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAI+VG T ADDP LT R + P RI++D +LS+ S++++T APVI+V
Sbjct: 194 RMDAIMVGQRTATADDPLLTAR--PPGKRIPARIVIDSQARLSVQSQLVQTVAEAPVIVV 251
Query: 249 TENDDPVLALAF---------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + N +L+ + L R +T++LVEGG ++
Sbjct: 252 AHPSASQKKILQLEQAGVEVLQFSNCTSENESQPNLRLCMQELARRDMTNILVEGGGSLL 311
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
S + RL+D + ++ + +IG +P+ LE N + SD+ +
Sbjct: 312 GSCFDQRLIDEVHVFIAPKIIGGAEAVTPIAGKGLEMIPELHNLQDYQIQQLDSDIYVNG 371
Query: 355 IGK 357
+
Sbjct: 372 RVE 374
>gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M04-240196]
Length = 369
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G L E + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
Length = 373
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 118/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDIDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGHDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLIDSRLELPLDARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294
A L + A A + I DL +L+ L RG+ L VE
Sbjct: 241 GAPLLIFCGRLDAGSEARANALEARGAEIVSLANAHGKVDLPAMLSALGARGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDVAAPANLDARTRLAFHSVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Protochlamydia amoebophila UWE25]
gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Protochlamydia amoebophila UWE25]
Length = 368
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 116/367 (31%), Positives = 177/367 (48%), Gaps = 10/367 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S FM A+ S NP V C+IVKD +IG+G T G HAE+ AL
Sbjct: 1 MKNSEIHHTFMLEAIAESWKARLHAPPNPWVGCVIVKDQKIIGKGYTYPSGQAHAEINAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ A E A+GA+ YVTLEPCSH+G++PPC + II GI V V + DPD RV G+G+Q L
Sbjct: 61 KSASENAKGASLYVTLEPCSHHGKTPPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKLR 120
Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + E E K+ L YL ++ + + LKIA S D S +T +
Sbjct: 121 EAGIHVKVGIGEKEAKVVLTPYLYQRESQIPYTVLKIATSVDGRTAAVDGTSQWLTSSEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238
+ HL RA S A+++G GT D P+LT R + P RI++D K +
Sbjct: 181 RLDAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLFD 240
Query: 239 TALLAPVIIVTENDDPVLALAF-----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
L +++ T+ + I+ +L++ +L RG+ +LVE
Sbjct: 241 QKLAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRGIIQVLVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350
GG+ + + + LV+ + +Y ++IG+ G+P + K F +
Sbjct: 301 GGSTLQSALLEIGLVNCLSVYTGPLLIGKSGLPLFSKEIPTLKKAKLLKIQNIKQFDNSF 360
Query: 351 CLEYIGK 357
++Y+ K
Sbjct: 361 RVDYLLK 367
>gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136]
Length = 369
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 126/366 (34%), Positives = 186/366 (50%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+ +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P+L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPQLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGKN 358
+ +
Sbjct: 361 VFRKND 366
>gi|257462874|ref|ZP_05627280.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium
sp. D12]
gi|317060498|ref|ZP_07924983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D12]
gi|313686174|gb|EFS23009.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium sp. D12]
Length = 359
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 105/358 (29%), Positives = 183/358 (51%), Gaps = 11/358 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL+ ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAG EA
Sbjct: 4 QEYMHFALKLAKKGEGKVNPNPLVGAVVVKNGNIIGQGYHHQYGGPHAEVYALQEAGTEA 63
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+ AT YVTLEPCSHYG++PPCA+ II+ GI+R ++ ++DP+ V+G+G+ + + GI V+
Sbjct: 64 KDATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGIQVE 123
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E+E ++ +L K + LK ++ D + S IT ++ +V L
Sbjct: 124 VGLCETEARVLNRVFLKYISTKTPFLFLKCGITLDGKLATRSFQSKWITNETARERVQYL 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + I+VGI TV+ D+P L R+ ++ RII+DP+ ++ L SK++ +I
Sbjct: 184 RNKYMGIMVGIHTVIEDNPSLDARIENGRDPY--RIIVDPYLEIPLSSKLLHKKDKKVII 241
Query: 247 IV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I + D L + + +L + GV S+L+EGG + +
Sbjct: 242 ITSLSEKETDKRKELEKLELRFIFLKERIFSFSNMLEEIGKLGVDSVLLEGGGQLISAAF 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYIG 356
++D ++ + ++G+ S + + V+ +G++ +E+
Sbjct: 302 QENVIDGGEIFIAPKILGDEKAVSFISGFCKESMEEAISLPNVKVHQYGNNCSMEFYR 359
>gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
alpha710]
gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579]
gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NZ-05/33]
Length = 369
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 188/366 (51%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL +
Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGA 296
I E D+ L + ++ I+ K L+ +L G+ L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P +M V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360
Query: 353 EYIGKN 358
+ +
Sbjct: 361 VFRKND 366
>gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 384
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 116/379 (30%), Positives = 177/379 (46%), Gaps = 24/379 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +++ A + T NP+V C+IV + ++G G G HAE+ AL+
Sbjct: 2 INKEDLTYLNRAFNLAELGKFTTHPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKL 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ A+G+T YVTLEPCSH+G++P CAQ +I ++ V+ DP+ VSG+G L
Sbjct: 62 AGKYAKGSTVYVTLEPCSHHGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNA 121
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + SE I L+ + R ITLK+ S D S IT S+
Sbjct: 122 GIKVKYNIMSEKSIKLNLGFFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH---------FKLSL 232
V +LRA+S AIL TV+ D+ +LT R N L + ++ L +
Sbjct: 182 DVQVLRAKSGAILSSAKTVIEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKI 241
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-------CRDLKKLLTILVGR 285
+ + +V +D + K+ I DL KL+ +L
Sbjct: 242 LNSHDIIKHKGIIFLVRSLNDNLTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILLGKN 301
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCV 341
+ S+L+E GA ++ SF+ S L+D IILY+S ++GE G+P + L F+
Sbjct: 302 EINSVLIESGANLSGSFLLSGLLDEIILYQSPKILGEKGLPLFFLHKSFKLNLSPKFVIS 361
Query: 342 RRDYFGSDVCLE---YIGK 357
G DV + YI K
Sbjct: 362 DVCRIGEDVRFKLHPYIRK 380
>gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ]
Length = 367
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 122/368 (33%), Positives = 189/368 (51%), Gaps = 10/368 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S+ D +M A+ +R +G T+ NP+V C+IV DG+++G G G PHAEV AL
Sbjct: 1 MSTSDIAYMKRAISLARKGLGRTAPNPAVGCVIVCDGVIVGEGWHKKAGTPHAEVHALAM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GA YVTLEPC H+G++PPC +I G+RRVV + DP ++V+G+GLQ L Q
Sbjct: 61 AGAAAKGADVYVTLEPCCHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQA 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ +E + K ++ ++ K A++ D I S +TG S+
Sbjct: 121 GVRVEVGLLEQQCKELNKGFIKSVTTGMPYLLYKTAMTMDGNIATVTGHSRWVTGEESRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA DA++VG+ TV+AD+P+LT R P+R+I+D + ++
Sbjct: 181 LVHRLRAHCDAVMVGVDTVIADNPQLTVRHVR--GRDPLRVIVDTRLRTPESVNVLNGTD 238
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297
+I T +P + + + +I+ C D + LL L RGV S+LVEGG+
Sbjct: 239 AGRTVIATCETNPDIHQRYLSQGADILVCREYDGRVEMTDLLRKLAVRGVQSILVEGGSR 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEY 354
+A + L+D I + + V+G G P ++ R G DV +
Sbjct: 299 LAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQGISTMDEAIQLEVQRVGMSGPDVVVYA 358
Query: 355 IGKNLCLQ 362
+CL
Sbjct: 359 RPVGVCLP 366
>gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
HOxBLS]
gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
HOxBLS]
Length = 374
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 109/363 (30%), Positives = 178/363 (49%), Gaps = 15/363 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
FM AL +R L S NP V C+IV++G ++G G T G HAE++AL EA
Sbjct: 16 HEFFMKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSR 75
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+ RGAT YVTLEPC+H+GR+PPCA ++ G+ RV+ ++DP+ V+G+GL+ L G
Sbjct: 76 GEDCRGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAG 135
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E + +L+R R + +K+A S D ++ S IT ++
Sbjct: 136 IHVICGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKARED 195
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H R ++DAI+ GIGTV+ D+P L R P+RI++D K LD+++
Sbjct: 196 GHRWRMRADAIMTGIGTVIQDNPRLNVR-LPDAVRQPVRIVVDSQLKTPLDARV---LEE 251
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298
I + N P A ++K + + + +++ L + + + VE GA +
Sbjct: 252 GKTWIFSANASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATL 311
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + LVD +++Y + +G G L + + G D+ +
Sbjct: 312 NGALMQESLVDEMLIYLAPCFLGSGKNMLSLNHIDRLADKIALDFHEIVPIGDDIRIVAR 371
Query: 356 GKN 358
+
Sbjct: 372 LTD 374
>gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) [Neisseria meningitidis WUE 2594]
Length = 369
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I V+G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|260575298|ref|ZP_05843298.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
gi|259022558|gb|EEW25854.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2]
Length = 357
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 130/356 (36%), Positives = 177/356 (49%), Gaps = 12/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL + +G NP+V C+IV G V+GRG T GG PHAEV AL +AG ARGA
Sbjct: 1 MAHALALAARGLGRAWPNPAVGCVIVAGGRVVGRGHTQPGGRPHAEVMALHQAGALARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPC+H+G +PPCA+ +I G+ RVV + DPD RVSG+G L GI V +
Sbjct: 61 TAYVTLEPCAHHGHTPPCAEALIAAGVARVVTALTDPDPRVSGKGHALLRAAGIAVTEGV 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+A R + +TLK+A S D I S ITG +S+ H LR
Sbjct: 121 LPAEATAANAGFLKRVTQGLPFVTLKLATSLDGRIATETGESRWITGALSRRAGHALRLS 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT LAD+P+LT R H P+RI++D + S S++ +T APV +
Sbjct: 181 HDAVMVGAGTALADNPDLTAR-GLGANHQPVRIVIDSRLRHSPQSRLGQTTRTAPVWLCH 239
Query: 250 ENDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
PV A + L + L L G+T +L EGGA +A S I
Sbjct: 240 TEAAPVDARQAWEATGARLIFCPATPEGHVALPEALRNLADLGLTRILCEGGAQLAASLI 299
Query: 304 NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
RL D + L+ + ++G G+ P L + G D +
Sbjct: 300 RDRLADELALFGAGSLLGAEGLAAIGPLALRHLTDAPRLHLLETHPIGEDSLSRWR 355
>gi|320449997|ref|YP_004202093.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
gi|320150166|gb|ADW21544.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01]
Length = 383
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 104/375 (27%), Positives = 171/375 (45%), Gaps = 23/375 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D RF+ AL+ + G T NP V ++V++G V+G G G HAEV AL +AG
Sbjct: 9 ELDERFLRRALQLAERARGHTHPNPLVGAVLVREGRVVGEGYHPRAGEAHAEVYALRQAG 68
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
EEA+GAT YV+LEPC+H+GR+PPC+ +++ G+ RVV DP+ ++ GL+ L G+
Sbjct: 69 EEAQGATLYVSLEPCNHFGRTPPCSLALLQAGVARVVAAARDPNP-LAQGGLERLRAGGV 127
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + +K R + LK A++ D + + ++ S+
Sbjct: 128 EVEAGLLEAEAQGQNEVFFHVQQKGRPFVLLKAALTLDGKVAALSGDARYVSSEESRRVA 187
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSLD 233
R ++VG+GTVL DDP LT R + P++++LD +
Sbjct: 188 QAYRQWLPVVMVGVGTVLKDDPWLTVREPDFRPFPLMLEPPPLRDPVKVVLDTEGRTPPT 247
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--------LLTILVGR 285
++I + V + ++ L +L+
Sbjct: 248 ARIFQKGPRGEPARVYVLVGKGAPKDRLRALEEAGARVVELPREGGRVSLDGALHLLLEE 307
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVR 342
G+ +L+EGG +A +F LVD + L+ + V+GEG LE K VR
Sbjct: 308 GLDGILLEGGPRLAGAFWERGLVDKLALFVAPKVLGEGRGFLEGFALERMAEAKRLRLVR 367
Query: 343 RDYFGSDVCLEYIGK 357
+++ G D+ LE +
Sbjct: 368 KEWLGEDLWLEAYPE 382
>gi|299822452|ref|ZP_07054338.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
gi|299815981|gb|EFI83219.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601]
Length = 394
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 174/366 (47%), Gaps = 12/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
++M+ A++ +R G T NP V +IVK +IG+G A G HAEV A +
Sbjct: 24 DKHEKWMAIAIKEARKGRGKTYKNPLVGAVIVKADRLIGKGYHASYGDVHAEVNAFQNVS 83
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
EE + ++ YVTLEPC+H+G+ PPC + I+E GI V V D + V G+G+ +L
Sbjct: 84 NPEETKHSSIYVTLEPCAHHGKQPPCCEKIVEMGIEHVYVAQLDSNPLVRGKGVAYLEAH 143
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ + +R +TLK AV+ D + +T +
Sbjct: 144 GIKVTIGVLEKEAEQLNPAFHFFHRHRRPLVTLKQAVTIDGKTNSSAASRTYLTDEKTSE 203
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LR S AILVG TVL DDP LT R N + P+RI+LD + +
Sbjct: 204 DVQQLRMGSQAILVGSETVLIDDPALTIRSNV-VPYPPVRIVLDRRGRTVDQKFQLWRDG 262
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
LA + T N+ + + ++ + K++ IL G+ SL +EGGAA+ +
Sbjct: 263 LAETWLFTGNEPDINFAEHVRVFVDPDWTTE----KVIRILAEEGIQSLCIEGGAAIHDA 318
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGK-- 357
F+ + VD I+ Y + ++G P+ + + F + DV L Y +
Sbjct: 319 FLAAGKVDRIVSYVAPYLLGGNARPAVASKRQTDALTAFELSHVEQLKEDVKLVYHRREA 378
Query: 358 NLCLQE 363
+ CL E
Sbjct: 379 DKCLPE 384
>gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
Length = 379
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 15/368 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D R+M+ A+ ++ + T+ NP V C++VKD +++G G G HAEV A+ +A
Sbjct: 6 SIADHRYMARAIVLAKQGLYTTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEVNAMAQA 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+ A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ +V+GRG+Q L G
Sbjct: 66 GDLAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESAG 125
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I + +E+E + ++ R ++LKIA S D MA S ITG +++
Sbjct: 126 ISAESGLLEAEARALNPGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARSD 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLDS 234
V LRA+S AIL G+ ++L D+ LT R + + P+R++LD + + +D+
Sbjct: 186 VQKLRARSSAILTGVESILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPIDA 245
Query: 235 KIIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
I+ + ++++ + + A + + L + LL
Sbjct: 246 SILSQPGRTLIATISKDAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCNELL 305
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
VE GA +A +FI+++LVD + LY + ++G P+ PL + + + G
Sbjct: 306 VETGATLAGAFIDAKLVDQLHLYMAMTLMGSSARPAFQLPLAKMSEQVRLKRMDMRMLGD 365
Query: 349 DVCLEYIG 356
D+ L
Sbjct: 366 DMKLILKP 373
>gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254]
Length = 371
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 109/368 (29%), Positives = 187/368 (50%), Gaps = 16/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M A+ ++ G + NP V ++V+ G VIG G Y G PHAEV AL+EA
Sbjct: 4 NIDEKYMRMAIELAKKGAGPVNPNPMVGAVVVQGGKVIGTGYHKYFGEPHAEVYALDEAS 63
Query: 65 EE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L
Sbjct: 64 KNSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILKN 123
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E ++ + + + ++ LK A++ D I S IT ++
Sbjct: 124 AGIEVTENILKEECDKINQVFFKYIMTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R + I+VGI TVLAD+P LT R+ +P RII+DPH K D +IK
Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIEN--GINPYRIIIDPHLKTEKDYTVIKEN 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGG 295
+ II+T ++ F + + K++L + G+ S+L+EGG
Sbjct: 242 IDEKTIIITSEENKNSEKQFDFSENSKVKFVFLNGTKFSFKEILEKIGMLGIDSILLEGG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV 350
++ ++D+ ++ + ++G+ S + + ++ + +G +V
Sbjct: 302 QSLISQAFEEDVIDAGEIFIANKILGDTEGKSFIAGFDKKNMNEAIVLKNIKYNVYGENV 361
Query: 351 CLEYIGKN 358
E++ K+
Sbjct: 362 GTEFLQKS 369
>gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
2489]
gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM
2489]
Length = 390
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 124/373 (33%), Positives = 180/373 (48%), Gaps = 19/373 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66
FM A+ ++ G NP V +I KDG +I G G HAE AL+ A E+
Sbjct: 18 FMQRAIELAKRGGGKVHPNPLVGAVIEKDGKIIAEGFHHEYGNLHAERDALKNAAEKNAC 77
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGA YVTLEPC H G+ PPC Q II+ GI+ VV+ DP+ V+G+G+ L GI +
Sbjct: 78 VRGANLYVTLEPCCHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGIKI 137
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
R L+ + KR + +K A S D ++ S IT S+ VH
Sbjct: 138 FRDFMKAECDSLNEIFFYYITAKRPFVIVKYAQSADGKTSLSSGESKWITNESSREYVHY 197
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + A++ GI TVL DDP LTCR+ G + + P+RI+LD K+ L+S ++KTA P+
Sbjct: 198 LRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVRIVLDTELKIPLESNLVKTANEVPL 257
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHSF 302
II T +D + K I +L +L G + S+LVE G ++ S
Sbjct: 258 IIFTCSDSAKKSALEEKGAKVIQIEKKDSHIDILQVLKKLGEFSIDSVLVESGGSLNSSL 317
Query: 303 I-----NSRLVDSIILYRSQIVIGE--GGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
LV+ ++ + + ++G G + SP++ N F D+
Sbjct: 318 FFYGKEKKCLVNKVLCFVAPKILGGINGTVHSPVQGIECSSLLSCVNLALKNVKTFSGDL 377
Query: 351 CLEYIGKNLCLQE 363
LEY K CL+E
Sbjct: 378 LLEYDFKEPCLEE 390
>gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 357
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 120/356 (33%), Positives = 177/356 (49%), Gaps = 8/356 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
MS AL + + NP V ++VKDG VIGRG G PHAEV AL+EAG ARGA
Sbjct: 1 MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAAARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G++ +
Sbjct: 61 TAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAEEGC 120
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R R + LK A+S D + +A S +TG ++ V RA+
Sbjct: 121 LEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQERAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+ AILVGIGTVLAD+P L RL P+++I+D H + D+ + T +
Sbjct: 181 ASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGAVWIFHGQ 240
Query: 250 ENDDPVLALAFRKKN---INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ A D ++++ +L R + +LVE G VA S +
Sbjct: 241 DAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLFAAG 300
Query: 307 LVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L+D +LY + +++G P P + + ++ G+D+ +
Sbjct: 301 LIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLRPQE 356
>gi|329898131|ref|ZP_08272333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
proteobacterium IMCC3088]
gi|328920911|gb|EGG28343.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
proteobacterium IMCC3088]
Length = 361
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 110/360 (30%), Positives = 169/360 (46%), Gaps = 15/360 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ + NP V C+IVKDG ++G G T G HAEV AL +AGE+ARGA
Sbjct: 1 MQRAINLAEHGKYSAKPNPHVGCVIVKDGQIVGEGYTQPPGQGHAEVMALAQAGEQARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TAYVTLEPC+H GR+ PC+Q +I+ GI +VV ++DP V+G G + L GI V
Sbjct: 61 TAYVTLEPCNHQGRTGPCSQALIQAGISKVVAAIEDPYPEVAGSGFEALKHAGIEVRVGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ K L +L R + LK+A S D I +A S ITG ++ V LRA+
Sbjct: 121 LADTVKQQLQGFLLRLERGYGRVRLKLACSLDGKIALANGESQWITGPSARRDVQRLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ ++ G+GTVL DD +L R H P+R + D + + +K + +
Sbjct: 181 AGLVITGVGTVLEDDCQLNVREGDLPLDPNLAREATAHQPLRAVFDSTLRTTNGAK-VLS 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ P + + LL ++ +L+E G +A
Sbjct: 240 GARTLFCAEPKTTRPDHINPENIVEVAALKTPAGLKNALLQLMAIAPANEILLECGPRLA 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
S++N+ L+D +ILY++ +++G + NF + G D+ L +
Sbjct: 300 GSWLNAGLIDELILYQAPVILGHNAQSLVHMDIATMTQRLNFGLIDTRRIGPDLKLTFKP 359
>gi|212634188|ref|YP_002310713.1| riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
Length = 373
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 127/372 (34%), Positives = 192/372 (51%), Gaps = 18/372 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D + MS A+ ++ + T NP V +IVKD +++G G G PHAEV AL A
Sbjct: 3 STEDNQMMSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNMA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVVV V DP+ +VSGRG+ L G
Sbjct: 63 GNDAKGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDAG 122
Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD + ++ ++ +L R + +T+K+A S D ++ S ITG ++
Sbjct: 123 IQVDVGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARRD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKLSL 232
V +RA+ A++ G+ TVLAD+P L R + + H P+R+ILD +L
Sbjct: 183 VQRIRARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQARLDA 242
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG--VTSL 290
+ I ++ + + V A+ + + + +L +L G S+
Sbjct: 243 ELAIFSVTSPVLLVSTRDYPESVK-SAWPAHVSHQVLPATDNRVELQALLTLLGKTCNSV 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
LVE GA +A +F+ S VD IILY++ ++G GG E+ N +
Sbjct: 302 LVEAGATLAGAFVASHCVDEIILYQAMKILGAGGRDLLALPDFEKMSEIPNIDVIDERKV 361
Query: 347 GSDVCLEYIGKN 358
G D L N
Sbjct: 362 GKDTRLTLRMSN 373
>gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
Length = 373
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 170/362 (46%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL+
Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKN 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARTRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|296160058|ref|ZP_06842878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
gi|295889804|gb|EFG69602.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
Length = 391
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 17/364 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++
Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP +T R P R+++D + +++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVRGDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLV 292
+I D A ++ DL +L +L R V L V
Sbjct: 241 G--APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGS 348
E G + S + VD +++Y + ++G + E D G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLAAPETLEDRVKLSFHAVDRIGD 358
Query: 349 DVCL 352
D+ +
Sbjct: 359 DLRI 362
>gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD]
gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
ambifaria AMMD]
Length = 373
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|254372095|ref|ZP_04987588.1| hypothetical protein FTCG_01236 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569826|gb|EDN35480.1| hypothetical protein FTCG_01236 [Francisella novicida GA99-3549]
Length = 355
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 171/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA6140]
gi|240117225|ref|ZP_04731287.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae PID1]
gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae PID24-1]
gi|240122774|ref|ZP_04735730.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae PID332]
gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
Length = 369
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
13091]
gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
13091]
Length = 369
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 182/365 (49%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I V+G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G L E + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|59800550|ref|YP_207262.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA 1090]
gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA 1090]
gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
Length = 369
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 371
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 109/371 (29%), Positives = 173/371 (46%), Gaps = 19/371 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D ++M AL ++ + L + NP V C+IVKDG VIGRG T G HAE+QA+ +A
Sbjct: 3 SAVDHQWMGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADA 62
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G++ G+T YVTLEPCSH GR+PPC ++ +V+V + DP+ VSG GL L+
Sbjct: 63 KANGKDIAGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLT 122
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + ++ ++ + + +KIA S D + S ITG ++
Sbjct: 123 DAGIEVQCGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLA 182
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H RAQ+ AI+ G+GTV DDP L R P RII+D + +++I+
Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVSTHR-QPWRIIVDSKLETPPNAQILND 241
Query: 240 ALLAPVIIVT---------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ VIIV K + R + +
Sbjct: 242 LQDSGVIIVCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF 346
+E G + S + VD ++LY + +GEG +P+ L +++ + +
Sbjct: 302 HIESGFKLNGSMLREGCVDELLLYYAPFFMGEGIGMANVPT-LPNLSTREDWRILDQSMI 360
Query: 347 GSDVCLEYIGK 357
G+D+ + I
Sbjct: 361 GTDLRIRLIKN 371
>gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
WM1]
gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum
WM1]
Length = 368
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 179/357 (50%), Gaps = 12/357 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+R ++ GL + NP V ++VK+G +IG G G HAE A+ E
Sbjct: 3 DMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKEGRIIGEGYYERYGALHAERNAILNCRES 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
G T YVTLEPC H+G++PPC + I++ GIRRVV+ DP+ V G+G++ L ++GI V
Sbjct: 63 PEGTTLYVTLEPCCHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ ++ + ++ +K A++ D S ITG ++ +VH
Sbjct: 123 VEDVLKEECDKLNEVFFHFIQTGKPYVVMKYAMTMDGKTAAYTGASKWITGEDARRRVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R + A++VGIGTVLADDP LTCR +P+RII D LDS+I+ TA P
Sbjct: 183 DRRRYSAVMVGIGTVLADDPLLTCR--LENGRNPLRIICDTQLHTPLDSRIVLTASKVPT 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301
+I T + + + K I+ +D +L+ L + S+L+EGG + S
Sbjct: 241 VIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARLMAKLGEEKIDSVLLEGGGILNWS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
+ + +V+ + Y + ++G +P+ + G D+ +E
Sbjct: 301 ALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSPEAGYFLTNSTITCLGEDILIE 357
>gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Planctomyces brasiliensis DSM 5305]
gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Planctomyces brasiliensis DSM 5305]
Length = 377
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 103/359 (28%), Positives = 166/359 (46%), Gaps = 12/359 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL +R G NP V ++V + +I G G PHAEVQAL AG+ ARG
Sbjct: 12 MQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRARG 71
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A +VTLEPC+H+G++PPC++ +I+ GI RV + DP +G + L + G+ V+
Sbjct: 72 AWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVEVG 131
Query: 130 MESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + L T+ + ++ K A++ D I S I+G S+ VH LR
Sbjct: 132 LCQQEAERLLRPFTKLMTTGQPYVHAKWAMTLDGKIATRTGSSQWISGPESRAVVHKLRG 191
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAIL G GTVLAD+P+LT R G + + + L+ ++ ++
Sbjct: 192 RCDAILTGRGTVLADNPQLTARPPGPRTPLRVVVDSQAQLPLTSQLVQTCSSDQPVLLAC 251
Query: 249 TENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
T D ++ + + L LLT L R VT+L +E G + SF+
Sbjct: 252 TARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALLTELGKRKVTNLFLECGGELLGSFL 311
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+ RL+D + ++ ++G S + G + + + + DV + I
Sbjct: 312 DQRLIDEVHVFLGPKLVGGKEARSAVLGGGVSEMAEALLLEEIEAETLAQDVYIRGIVP 370
>gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
Length = 361
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 123/359 (34%), Positives = 182/359 (50%), Gaps = 11/359 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMHQALDLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +L+R +R + LK AVS D ++ S IT ++ V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P+L R P RI+LD +L S ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPQLNVRDFP-TLRQPARIVLDSRLRLPPYSHLVTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E D+ L +I I+ DL L+ +L G ++VE G+ + +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L D I+LYRS ++G G +P + V + G D+ + +
Sbjct: 300 AEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKND 358
>gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [marine gamma proteobacterium
HTCC2207]
gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium
HTCC2207]
Length = 373
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 113/372 (30%), Positives = 171/372 (45%), Gaps = 15/372 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D +MS AL + TS NPSV C++V DG ++G G T G HAEV+AL
Sbjct: 1 MAYSVDDREYMSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A ATAYVTLEPCSH G++ PC + +I+ GI RVV+ +DP+ +V+G G++ L
Sbjct: 61 NAAASAKG-ATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQ 119
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V E + + ++ R + + +K+A S D MA S IT S
Sbjct: 120 DAGIEVACGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPAS 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHSPMRIILDPHFKLSLD 233
+ V LRA + AI+ GIGT L DDP LT R+ P+R+++D ++S +
Sbjct: 180 RKDVQRLRAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPE 239
Query: 234 SKIIKTALLAPVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+++ + + + A DL +LL L R S
Sbjct: 240 ARMFAQPGDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNS 299
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346
++VE GA +A F+ L+D ++ Y + + G P P++
Sbjct: 300 VMVEAGAGLAGGFVAEGLLDELVCYWAPKLFGSDARPMFELPIQTIDAHLALAVKDMRQI 359
Query: 347 GSDVCLEYIGKN 358
G D+ +
Sbjct: 360 GEDIRITLRPDK 371
>gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Psychromonas ingrahamii 37]
gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychromonas ingrahamii 37]
Length = 387
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 23/374 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D +M+ A+ ++ +S NP+V C+IV + I++G G G HAEV AL
Sbjct: 6 FSDLDKYYMAHAILLAKKGRFTSSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAI 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A GAT YVTLEPCSH+GR+PPCA + + GI+RV++ + DP+ +V+G G++ L +
Sbjct: 66 AKDKAMGATCYVTLEPCSHFGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKA 125
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + + L+ ++++ K +T+K+A S D + S ITG ++
Sbjct: 126 GIKVDLGLLKNEAMDLNRGFIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARC 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRIILDPHF 228
V RA A+L G TV+AD+P L R L+ H P+RIILD H
Sbjct: 186 DVQYFRALQSAVLTGSATVIADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHN 245
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI-----IYCDCRDLKKLLTILV 283
K++L K+ ++ + DD +I +LK LLT L
Sbjct: 246 KITLKEKLFSLEGKVLLVSLLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQLS 305
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFM 339
+ L VE GA +A F N +LVD ILY++ ++G Y +
Sbjct: 306 DYEINDLWVEAGATLAGEFFNHQLVDQFILYQAPKLMGSQARDLVNLPDYSKMIEVVQLS 365
Query: 340 CVRRDYFGSDVCLE 353
G+D+ +
Sbjct: 366 LQSVVLIGNDIRII 379
>gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia rhizoxinica HKI 454]
gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
1.1.1.193) [Burkholderia rhizoxinica HKI 454]
Length = 382
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 120/361 (33%), Positives = 173/361 (47%), Gaps = 12/361 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FD M AL + + TS NP V C++VKDG VIG G T G HAE+ AL++
Sbjct: 2 FSDFDRLQMQRALVLAERGLYTTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G GATAYVTLEPCSH+GR+PPCA +IE GI RV+ ++DP+ +VSGRGL L
Sbjct: 62 ARLRGHTPAGATAYVTLEPCSHFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASL 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
G+ V + + L+ +++R + LKIA + D + S IT
Sbjct: 122 RDAGVDVRCGLLAHEAQELNVGFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ A L GIGTV DDP++T R P+R+++D + LD++I+
Sbjct: 182 ARTDGHAWRARACATLTGIGTVREDDPQMTVRAVS-TPRQPLRVLVDSCLDVPLDARILT 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A + + A A R DL L +L RG+ L VE
Sbjct: 241 GAPPLVICARDDAAFAARAHALRAAGAEVIALPNQSGKVDLPAALRLLAARGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVC 351
G + S + VD ++LY + ++G LE + G D+
Sbjct: 301 GYKLNGSLLREGCVDELLLYIAPALLGNATGMFNLEPPPTLDQRVRLQYHSIERIGEDLR 360
Query: 352 L 352
+
Sbjct: 361 V 361
>gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
Length = 369
Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G L E + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24]
Length = 348
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+RIILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS + + K F + G D +
Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 344
>gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma
proteobacterium HTCC2143]
gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma
proteobacterium HTCC2143]
Length = 370
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 177/366 (48%), Gaps = 17/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DA +M A+ + + S NP V C+IV++G +IGRG G HAEV A+ +AG
Sbjct: 3 DADYMQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAG-N 61
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
AT YVTLEPCSH GR+PPC+ +I + RVVV + DP+ V+G G+ L Q GI+V
Sbjct: 62 VEDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVV 121
Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ ++ S+ + Y+ R + +K+A+S D MA S ITG +++ V
Sbjct: 122 ELGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQ 181
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKLSLDSK 235
LRA+S ++ G+ T++ADD LT R + E P+R++LD + +L +K
Sbjct: 182 LRARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAK 241
Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I+ ++ EN + L + DL +L L V +LVE
Sbjct: 242 ILSQPGRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEILVE 301
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350
GA ++ + + LVD +Y + ++G P PL ++ + G D
Sbjct: 302 AGATLSGALAEAGLVDHYTVYMAPTLLGNTARPLLQLPLATMAEQQRLQIDSIEPIGEDW 361
Query: 351 CLEYIG 356
++
Sbjct: 362 RIDSRP 367
>gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
PsJN]
gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
PsJN]
Length = 383
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 118/364 (32%), Positives = 176/364 (48%), Gaps = 17/364 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL ++ + T NP V C++VK+G VIG G T G HAE++AL++
Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P +T R P R+++D + D++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPQRVLIDSQLDVPPDAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLV 292
+ +I D A ++ DL +L +L R V L V
Sbjct: 241 G--ASTLIFCGNLDGRHTDRAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELHV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGS 348
E G + S + VD +++Y + ++G + E D G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETLEGRVKLNFHAVDRIGE 358
Query: 349 DVCL 352
DV +
Sbjct: 359 DVRI 362
>gi|240103311|ref|YP_002959620.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
gammatolerans EJ3]
gi|239910865|gb|ACS33756.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus
gammatolerans EJ3]
Length = 408
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 174/362 (48%), Gaps = 17/362 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S+ D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E
Sbjct: 48 TMSNEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGKVIGVGWHKRFGEKHAEVNAIE 107
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP+ VSGRG++
Sbjct: 108 DAKRKGHDVRGATMYVTLEPCSHWGKQPPCADRIIREGFKRVVVAMVDPNPLVSGRGIEK 167
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ + GI V+ + E E + ++ +K +++K+A++ D I S ITG
Sbjct: 168 MKKAGIEVEVGVLEDEARKLNEIFIKYVTKKMPFVSIKLALTLDGFIATETGSSQWITGE 227
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ +
Sbjct: 228 KARQKVQELRRRHMAIMVGSGTVLADNPRLNCRLENCPE--KIKVILDRSGRVAKAIREG 285
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ L + + ++L L G+ S+L+EGG
Sbjct: 286 RKFRL-----FEDGRVIFFTEKPELFEGIAEAYPITEPGEILRKLGELGIDSVLIEGG-R 339
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ F++ D L+ + G G P +E+ + G +
Sbjct: 340 ITCQFLSH--ADKFYLFYGPKLFGNGIKPFECLKVEDANEAPVLRIDSIERLGKSFLVTA 397
Query: 355 IG 356
Sbjct: 398 YP 399
>gi|254375242|ref|ZP_04990722.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
gi|151572960|gb|EDN38614.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548]
Length = 355
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 171/366 (46%), Gaps = 20/366 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + S NP V C+IVK+G +I G G HAEV AL +
Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L
Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + + + Q K+ + K A+S D I + S I+ +
Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR DAIL+G T++ D+P L R+N + P R IL H + +
Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240
Query: 242 LAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A I V L + + L LL + G+TSLLVEGG
Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLFPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+SFIN +LV+ Y + ++I + + +F + D+ +
Sbjct: 301 TLNSFINQKLVNEFYTYLAPVIIAD-------YNPKQQLSFNQISVR---EDIII----- 345
Query: 358 NLCLQE 363
N C +E
Sbjct: 346 NSCFKE 351
>gi|92117361|ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14]
gi|91800255|gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Nitrobacter hamburgensis X14]
Length = 383
Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats.
Identities = 150/364 (41%), Positives = 200/364 (54%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D RFM AL R +G ++ NP+V +IVKD +++GRG T GG PHAE +AL AG
Sbjct: 19 AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIVGRGWTQPGGRPHAEAEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI
Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGQGHARLRAAGI 138
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD +E + R +KR H+ LK+AVS D I AG V ITG +K +V
Sbjct: 139 SVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSDGRIAAAGGVPVAITGEAAKARV 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQ +AILVGIGTVLAD+P LTCRL G++ SP+R++LD ++ DS+++++A
Sbjct: 199 HLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLRVVLDHALRIPHDSRLVRSARET 258
Query: 244 PVIIVTENDDPVLALA-------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ ++ + + DL +L L RGVT L+VEGGA
Sbjct: 259 PLWVMASDLAQAPVAMKLGAAGVQVLRVPVAAGAPGLDLAAILRALSERGVTRLVVEGGA 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA SF+ + LVD L R IG+ G+ + PL F D
Sbjct: 319 RVASSFVAAGLVDEAWLLRGPDPIGDDGVAALGALPLTAITGSPQFRACASKTLDQDTLA 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2M]
gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2]
gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD1]
gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD1]
gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2]
gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2M]
Length = 373
Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 176/362 (48%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++
Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVRGID-TPRQPQRVLVDSRLELPLDARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294
A L + D A A + + I DL +L+ L RG+ L VE
Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLTFHHIERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
UPII 345-E]
gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus
UPII 345-E]
Length = 378
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 113/374 (30%), Positives = 174/374 (46%), Gaps = 21/374 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D ++MS AL ++ T TNP V ++VK+G VIG G G HAEV A +
Sbjct: 2 FINEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVIGEGWHKKYGDVHAEVNAFKN 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L +
Sbjct: 62 CKENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKEN 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ + + + L K A+S D S I+ S+N
Sbjct: 122 GIQVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKTSCYTGDSKWISSETSRN 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
VH LR + AI+VG GT+ D+P LT R + + +P+RII+D
Sbjct: 182 DVHYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSS 241
Query: 231 SLDSKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
+DSK+ + V+ + D N+ DL K L IL +G
Sbjct: 242 PIDSKVFQDGGKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKG 301
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCV 341
+ S+L+EGGA A N ++VD + +Y + I+IG PS + + K +
Sbjct: 302 INSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGFGVSKISDAIKLKNI 361
Query: 342 RRDYFGSDVCLEYI 355
+ D E
Sbjct: 362 SINNLNEDTIFEAY 375
>gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium
1_7_47_FAA]
gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium
1_7_47FAA]
Length = 370
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 121/363 (33%), Positives = 183/363 (50%), Gaps = 13/363 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +S D +M AL + G + NP V +IV+DG VIG+G + G PHAE AL
Sbjct: 1 MSETS-DNIYMGRALALAAKGEGRVNPNPLVGAVIVRDGAVIGQGYHGFYGGPHAERAAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ A+GA YVTLEPC HYG++PPC II+ GIRRVV+ DP+ V+G+G+ L
Sbjct: 60 DSLTAPAKGAVLYVTLEPCCHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAALK 119
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + E E + ++ ++ +K A++ D +G S ITG +
Sbjct: 120 SHGIEVIQGVLEEECIRQNEVFFHFIRTRQPYVVMKYAMTMDGRTATSGRLSRWITGEQA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH R + A++ G+GT+LADDP+LTCR+ G +P+RII D L S +++T
Sbjct: 180 REHVHKTRNRLSAVMTGLGTILADDPQLTCRIPG--GRNPVRIICDTRLMTPLTSNVVRT 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295
A I+ T DP F+ I+ RD L+ L G + S+L+EGG
Sbjct: 238 APHVRTILATCCQDPAAMAPFKDAGCEILILPERDGHTDLRFLMERLGGMDIDSVLLEGG 297
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV 350
+A+ S ++ +V + Y + + G P+ +E + G D+
Sbjct: 298 SALNWSALDQGIVHKLQAYIAPKIFGGEKGLCPVGGKGVELPGMAFSLEPPKITVLGRDI 357
Query: 351 CLE 353
LE
Sbjct: 358 LLE 360
>gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
IOP40-10]
gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
IOP40-10]
Length = 373
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|221140247|ref|ZP_03564740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus str. JKD6009]
Length = 347
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 111/354 (31%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|33598380|ref|NP_886023.1| putative riboflavin-specific deaminase [Bordetella parapertussis
12822]
gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis]
Length = 386
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 114/368 (30%), Positives = 176/368 (47%), Gaps = 13/368 (3%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S+ D +M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV
Sbjct: 1 MNTSTPTDDVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60
Query: 59 ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
AL EA G GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+G
Sbjct: 61 ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQG 120
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPI 174
L L GI V + + + L+A ++ + + LK+A S D + S +
Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWM 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ H RA+S +L G+GTVL DDP+L R H P + ++D F++ D+
Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLL 291
++ V + +A R + + D L + L + + +
Sbjct: 240 RLFDDGAQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRVDLPAVMRWLASQEINEVH 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGS 348
VE GA ++ + + VD +++Y + +++G+ LE + F G+
Sbjct: 300 VEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGT 359
Query: 349 DVCLEYIG 356
DV L
Sbjct: 360 DVRLRARV 367
>gi|295698401|ref|YP_003603056.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
pediculicola USDA]
gi|291157057|gb|ADD79502.1| riboflavin biosynthesis protein RibD [Candidatus Riesia
pediculicola USDA]
Length = 373
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 16/372 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D +FMS A+ ++ TS NP+V C+IV++ ++G + G HAEV A+++
Sbjct: 1 MNDKDRQFMSRAIFLAKKGKFTTSPNPNVGCVIVQNNRIVGESYHSKTGESHAEVLAMKK 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +GAT YVTLEPC+HYG +PPC +I I ++ V + DP+ +VSG+ L L +
Sbjct: 61 AGHFLKGATVYVTLEPCNHYGLTPPCVDELINAKISKIFVSMTDPNPKVSGKSLIKLKKS 120
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V ++ E + ++ R + +IT+K+A S ++ +
Sbjct: 121 GVQVISGLLKDESEKINLGFIKRMKQGLPYITIKMATSINSKVIPINFEKNKWISSYKSR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
Q + ++ G+ + D I + + + I
Sbjct: 181 QDVQEIRAQSSAVLTTGSTIVSDDSRLNVRWNDFSDELKNIYPEKEIRQPVRIVIDTKNK 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----------LTILVGRGVTSL 290
+ + + KL + + R + S+
Sbjct: 241 VHENHKIVNTPGECWLFRSQFSKKRWKKNVKEFSTKLDSEGRIDLIYTMKQIARRKINSI 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYF 346
L+E G A S ++ L D IILY + G + E N V+
Sbjct: 301 LIESGPTFASSLLSLNLFDQIILYIAPKFFGSQSKELIIISKESEINNISKLRFVQVKKI 360
Query: 347 GSDVCLEYIGKN 358
G DV + K
Sbjct: 361 GKDVRVILKKKE 372
>gi|240079985|ref|ZP_04724528.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA19]
gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
Length = 369
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 182/365 (49%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L DS+++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPDSRLLTDGQ 240
Query: 242 LAPVIIVTEND-----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+I E + R + DL L+ +L G ++VE G+
Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|238026457|ref|YP_002910688.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
BGR1]
gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
BGR1]
Length = 372
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 121/362 (33%), Positives = 172/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL S + T+ NP V C+IVKDG+VIG G T G HAEVQA+++
Sbjct: 2 FSDTDFAHMQRALDLSSRGMYTTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+GR+PPCAQ +I+ + RV+ ++DP+ VSGRGL L
Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + ++ +++R R + +KIA S D + S ITG
Sbjct: 122 RDAGIEVRCGLLAQEAHEMNIGFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK--- 235
++ H RA++ AIL GIGTVL DDP LT R P+R+++D L LD+K
Sbjct: 182 ARRDGHAWRARACAILTGIGTVLEDDPRLTVRDID-TPRQPLRVLVDSRLDLPLDAKLLA 240
Query: 236 -IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +E L + DL +L L G+ L VE
Sbjct: 241 GAPILVFCGRLDAASEARAAALRDRGAEVIPLADANGKVDLPAMLAALGRHGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKN--FMCVRRDYFGSDV 350
G + S + VD +++Y + ++G L + D G D+
Sbjct: 301 GHKLNGSLLREGCVDELLVYLAPTLLGPEAAGMFNIATPPTLAQRTVLQYHSIDRIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RV 362
>gi|254468535|ref|ZP_05081941.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
gi|207087345|gb|EDZ64628.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13]
Length = 363
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 96/366 (26%), Positives = 166/366 (45%), Gaps = 11/366 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D FM+ A++ ++ +G + NP V +IV D +I G G PHAEV A+
Sbjct: 1 MTFNKLDFFFMAQAIKLAKKGLGQCNPNPIVGAVIVVDDKIIATGYHQEFGGPHAEVVAI 60
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ + +T +VTLEPC+H G++PPC I++ I+RVV+ DP+ +V+G ++
Sbjct: 61 HNCKDKALLKKSTLFVTLEPCAHEGKTPPCLDLILKHDIKRVVIASQDPNPKVNGISIKS 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L +KG+ VD + + L+ +++ + KIAVS D + S I+
Sbjct: 121 LIEKGVEVDVGLMEDQAFNLNKGFFKRILNNIPRVVSKIAVSSDGKTALNNFQSKWISNE 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S++ V LR SD IL T+ +D+P T R P R I+D F+ +LD+ I
Sbjct: 181 FSRSDVQKLRRLSDGILTSYKTINSDNPRFTVRDVD-SSKQPYRFIIDASFQSNLDAHIF 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
K V+I + + +++ + V +LLVE G
Sbjct: 240 KQE---KVVIFYSKEITNKPNLKAICIPVSCVDGVLNFTEIMKHIASMEVNNLLVEAGPG 296
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + R++D +I+Y+SQ ++G + + +F D+
Sbjct: 297 LNGLLLQHRMIDELIIYQSQSLLGGNAREMFNHPVITAMESRNQLKLMDCRFFDKDIRFI 356
Query: 354 YIGKNL 359
Y +
Sbjct: 357 YEIDYV 362
>gi|281357052|ref|ZP_06243542.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
BAA-548]
gi|281316610|gb|EFB00634.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC
BAA-548]
Length = 346
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 165/362 (45%), Gaps = 32/362 (8%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D +FM AL +R GLTS NP V +IV+DG +IGRG G PHAE+ A
Sbjct: 1 MSESVRCDQKFMLEALALARMGWGLTSPNPMVGAVIVRDGEIIGRGYHCKAGEPHAEINA 60
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L + G +A+GAT YVTLEPCS GR+P C I GI RVV+ DP+ + +GRG+
Sbjct: 61 LIDVEKHGLDAKGATIYVTLEPCSTVGRTPACTDAIRAAGISRVVIGSLDPNPKHAGRGV 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPIT 175
Q L + GI V +E ++ + + R + LK+A++ D I A S IT
Sbjct: 121 QLLEEAGIQVTVGVERAACGEINRPFFKWITTGRPFVILKMAMTLDGKIATADGESKWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G ++ +V LR SDAI+VG TV D P LT R P+R+I +
Sbjct: 181 GPDARRRVQQLRRLSDAIMVGGETVRQDRPLLTVREPDSWPCQPLRLIASRSMDEEELEE 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
V D +LL L R +T LL+EGG
Sbjct: 241 YFPDGNAELV----------------------RLESEEDWGRLLDELGKREITCLLIEGG 278
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDV 350
+A S + + VD + + + ++G L L + V+ ++G D+
Sbjct: 279 GELAASALQAWAVDYVEFHIAPKLLGGRDSRPVLGGDNPDSMALAQQLHRVKVTHYGEDI 338
Query: 351 CL 352
+
Sbjct: 339 AI 340
>gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
1_1_47]
gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
1_1_47]
Length = 363
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 172/365 (47%), Gaps = 13/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D +M AL ++ NP+V C+IVKD +IG G T G HAEV AL
Sbjct: 1 MSFS--DCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMAL 58
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A GE GAT YVTLEPCSHYGR+PPCA + + RVV + DP+ V+G+GL+
Sbjct: 59 RDAASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLK 118
Query: 118 WLSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L + G+ V+ E + +L RQ E + K+A+S D +A S IT
Sbjct: 119 MLEEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITS 178
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H R S A+L G+GTVLAD+P++T R P+++++D + L+ D KI
Sbjct: 179 EEARADGHFWRGISGAVLTGLGTVLADNPQMTAR-FEGVTRQPLKVVVDSNLSLNPDLKI 237
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ V + + + I DL+ L+ L R + + VE G
Sbjct: 238 FQGGKTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAG 297
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVC 351
A + + L+D ++Y + + +G+G PS ++ G DV
Sbjct: 298 ARLNGALAMEGLIDEYLIYVAPVFLGDGRRLLDLPSF-KDLCEGVALEFTDIQKVGPDVR 356
Query: 352 LEYIG 356
L
Sbjct: 357 LMLRP 361
>gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
DSM 20731]
gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans
DSM 20731]
Length = 371
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 112/362 (30%), Positives = 178/362 (49%), Gaps = 14/362 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M AL + G TS NP V C+IV +G ++G+G G PHAE+ A+ +
Sbjct: 6 TVTDEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMAD 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG + G TAYVTLEPCSHYGR+ PC + +I GI++VV DDP+ +V+GRG L +
Sbjct: 66 AGNQVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEA 125
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V R + ++ + ++ R + LK A++ D I A S I+ S+
Sbjct: 126 GVEVVRGVLADKANRQNEVFMHWMKTGRPFVALKYAMTLDGKIATASGDSKWISNEQSRT 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR+ D ILVG TVL DDP + ++ +P+RI+LD H +L +D K+
Sbjct: 186 YAHKLRSIYDCILVGKNTVLNDDP--SLTCRLVEGKNPLRIVLDSHCQLPMDRKVFTDGE 243
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGA 296
+++ + D A AF+ + ++ L L + TS+LVEGG+
Sbjct: 244 ARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILLDRLGQQEKTSVLVEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
V +F + RL + + + +IG + + + FG+D+
Sbjct: 304 QVHGAFFDGRLAQRVYAFIAPCLIGGKRNLGAIGGRGARNMDLRVTLQEPQYEAFGTDLM 363
Query: 352 LE 353
+
Sbjct: 364 VT 365
>gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385]
Length = 369
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 124/365 (33%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L ++ I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G L E + V + G ++
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4]
Length = 348
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+RIILD ++ +++ ++ I T N +A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLLVEGG V SFI ++L+D +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS +E + K F V G D +
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRFIGYPE 344
>gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
MC40-6]
gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
MC40-6]
Length = 373
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 116/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDSGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|94311620|ref|YP_584830.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cupriavidus metallidurans CH34]
gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Cupriavidus metallidurans CH34]
Length = 373
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 119/370 (32%), Positives = 181/370 (48%), Gaps = 15/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D M AL + + T+ NP V C+++KDG+VIG G T G HAE+QA+++
Sbjct: 2 FSAADYTAMEQALALAARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + GATAYVTLEPCSH+GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L
Sbjct: 62 AISRGHDPAGATAYVTLEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRL 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V +E E + +++R + +K+A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLEKEARDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQP 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---K 235
+++ H RA++ AIL GIGTV D+P LT R P R+++D ++ LD+
Sbjct: 182 ARDDGHAWRARACAILTGIGTVRDDNPALTVRAIP-TPRQPQRVLVDSRLEVPLDAQILN 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLL 291
PV++ +D A + + +L+++L L RG+ L
Sbjct: 241 RDTGDFAKPVLVFCAIEDKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELH 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
VE G + S I D +++Y + ++G+ PL + F G
Sbjct: 301 VEAGFKLNGSLIREGCADELLVYLAPKLLGDAQGMFNLPPLSKLEDATEFRWHEVRQIGD 360
Query: 349 DVCLEYIGKN 358
D+ L +
Sbjct: 361 DLRLIARRAD 370
>gi|259416594|ref|ZP_05740514.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
gi|259348033|gb|EEW59810.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B]
Length = 366
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 134/365 (36%), Positives = 188/365 (51%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D RFM AL R G T NP+V C+IVK G V+GRG T GG PHAE AL +
Sbjct: 1 MSKSDHRFMGLALSLGRRGQGRTWPNPAVGCVIVKQGRVVGRGWTQPGGRPHAEPMALAQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A GATAYV+LEPCSH+G++PPCAQ +I+ GI RVV ++D D RVSG+G + L
Sbjct: 61 AGAAAHGATAYVSLEPCSHHGKTPPCAQALIDAGIARVVAAIEDSDPRVSGQGFEMLRAA 120
Query: 123 GIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + +E F H R + R +TLK+A S D I S ITG ++
Sbjct: 121 GIKVTTGIRTEEAGFDHEGFFLRTEQGRPFVTLKLASSFDGRIATGSGQSQWITGPEARR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +RA+ DA++VG GT ADDP LT R + +H P R+++ H L L S++ ++A
Sbjct: 181 MVHAMRARHDAVMVGAGTARADDPSLTVR-DLGIDHQPARVVVSRHLDLPLMSQLARSAK 239
Query: 242 LAPVIIVTENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ + L + D +L L G+T + EGG
Sbjct: 240 DIPLYLCHGTGADTERLRAWEGLGAQLLSCNALGTQLDPHDVLEQLGSAGLTRVFCEGGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
A+A + + LVD +I + + + IG G+PS + F + G+D+
Sbjct: 300 ALAATLLAHDLVDELIGFSAGLAIGAEGLPSIGALGIGHLKEAPRFELIETRPVGADILH 359
Query: 353 EYIGK 357
+
Sbjct: 360 RWRRP 364
>gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Sodalis glossinidius str. 'morsitans']
gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str.
'morsitans']
Length = 375
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 119/367 (32%), Positives = 170/367 (46%), Gaps = 20/367 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +++ A +R T+ NP+V C+IV+DG ++G G G HAEV AL +AG
Sbjct: 2 DHDEVYLARAFELARRGRFTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
AR ATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRG L Q GI
Sbjct: 62 NAARCATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGI 121
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ++ R + LK+A S D MA S IT ++ V
Sbjct: 122 EVRHGLMLPEAEAVNPGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
RA+SDAIL TVLADDP LT R L E + + + + I + +
Sbjct: 182 QRWRAESDAILSTATTVLADDPALTVRWASLPEDVQA-LYPEERLRQPVRVIIDRANSVT 240
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILVGRGVTS 289
P V + ++ + DL L+ L R + S
Sbjct: 241 PSHWVAQGVGLTWLARLAPDDLTWPSSVEQLLLPAGEGANAAHLDLVALMMQLGRRQINS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345
L VE GA +A + + + LVD +ILY++ ++G P LE F +
Sbjct: 301 LWVEAGAGLAGALLGAGLVDELILYQAPKLLGADARPLCLLPGLERLGAAPGFTLLDVRQ 360
Query: 346 FGSDVCL 352
G D+ L
Sbjct: 361 VGPDLRL 367
>gi|57640359|ref|YP_182837.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
KOD1]
gi|57158683|dbj|BAD84613.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis
KOD1]
Length = 353
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 173/362 (47%), Gaps = 19/362 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +FM AL ++ G T+ NP V +IVKDG +IG G G HAE+ A+E+
Sbjct: 1 MRDEDEKFMRLALELAKRGEGWTNPNPMVGAVIVKDGKIIGVGWHRKFGEKHAEINAIED 60
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV ++DP+ V+G+G++ +
Sbjct: 61 AKAKGYDVRGATMYVTLEPCSHWGKQPPCADRIIQEGFKRVVVAMEDPNPLVAGQGIEKM 120
Query: 120 SQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V+ + E + +L K +++K+A++ D I S ITG
Sbjct: 121 RKAGIEVEVGLLEEEARKLNEIFLKYITTKLPFVSIKLALTLDGFIATETGSSKWITGEK 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH-FKLSLDSKII 237
++ +V LR + AI+VG GTVLAD+P L CRL E + + +
Sbjct: 181 ARQRVQELRRKHMAIMVGSGTVLADNPRLNCRLENCPEKVKVILDRSGRVADEMRKGRKF 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ VI TE + +A + K+L L G+ S+LVEGG
Sbjct: 241 RLFEDGRVIFFTEKPEKFKGIAEAYPI--------TEPAKILKKLGELGIDSVLVEGG-R 291
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A F++ L D + L+ + G G P +E + G +
Sbjct: 292 IACQFLS--LADKLYLFYGPKLFGRGIKPFECLKVENTKEAPLLRIESIERLGESFLVTA 349
Query: 355 IG 356
Sbjct: 350 YP 351
>gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
gladioli BSR3]
gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
gladioli BSR3]
Length = 372
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 112/361 (31%), Positives = 162/361 (44%), Gaps = 11/361 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL S + TS NP V C+IVKD +VIG G T G HAEVQA+++
Sbjct: 2 FSESDFAHMQRALDLSSRGMYTTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ VSG+GL L
Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGML 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + E + +++R + + +K A+S D + S ITG
Sbjct: 122 RDAGIEVRCGLLAQEAREMNIGFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP---HFKLSLDSK 235
++ H RA++ AIL GIGTV DDP+LT R ++ + L S
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVRGIDTPRQPLRVLVDSRLEVSLEAKLLSG 241
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ E L + DL LL L RG+ L VE G
Sbjct: 242 APILIFCGELDAAGEGRAAALRDRGAEVVPLAGPNGKVDLPALLQALGKRGINELHVEAG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVC 351
+ S + VD +++Y + ++G+ D G ++
Sbjct: 302 HKLNGSLLREGCVDELLIYVAPTLLGDNAAGMFNLAAPATLEQRTRLQFHTIDRIGDELR 361
Query: 352 L 352
+
Sbjct: 362 I 362
>gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia xenovorans LB400]
gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia xenovorans LB400]
Length = 389
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 17/364 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++
Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP +T R P R+++D + +++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLV 292
+I D A ++ DL +L +L R V L V
Sbjct: 241 G--APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGS 348
E G + S + VD +++Y + ++G + E D G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLTTPETLDDRVKLHFHAVDRIGD 358
Query: 349 DVCL 352
D+ +
Sbjct: 359 DLRI 362
>gi|239998220|ref|ZP_04718144.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae 35/02]
gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
Length = 369
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
DSM 12680]
gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus
DSM 12680]
Length = 364
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 125/362 (34%), Positives = 184/362 (50%), Gaps = 11/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D ++M A+ + +G TS NP V ++V +G V+G G G PHAE+ AL +AG
Sbjct: 2 SIDEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEGYHQLAGTPHAEIHALNQAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPC HYG++PPC II GI+RVVV + DP+ +VSG+G+ L GI
Sbjct: 62 ERARGATLYVTLEPCCHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121
Query: 125 IVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E + + + LK A++ D I S +TG ++ V
Sbjct: 122 EVEVGVLEEEARRANEFFFKFITTGMPFVALKTAMTMDGKIATRTGDSRWVTGEKARRFV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR DA+LVG+GTVL D+P L RL+ + PMR+ILD ++ LDS+I+ T+
Sbjct: 182 HELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMRVILDGRLEIPLDSQIVLTSNQQ 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAAV 298
++VT + +A + + + L GVTS+LVEGG V
Sbjct: 242 CTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLVPVLEELARLGVTSILVEGGGQV 301
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353
SF+ + LVD + + + + G P+P+ +E + F DV +
Sbjct: 302 NASFLEAGLVDKVYWFIAPKICGGESAPTPVRGTGVEMMDQARKLRQFDLSRFDDDVLIT 361
Query: 354 YI 355
Sbjct: 362 GY 363
>gi|256827880|ref|YP_003156608.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
DSM 4028]
gi|256577056|gb|ACU88192.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum
DSM 4028]
Length = 374
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 112/371 (30%), Positives = 169/371 (45%), Gaps = 19/371 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D FM A+R + G T+ NP V ++ + G V+ G G PHAEV+AL +A
Sbjct: 4 DCAFMDQAIRLAEQGRGRTAPNPCVGAVLTRGGEVVAEGWHTACGQPHAEVEALRDAQAK 63
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + RG T YVTLEPC+H G++PPC + I+E G+ VVV DP+ V+G G +L +G
Sbjct: 64 GVDPRGCTLYVTLEPCNHQGKTPPCTRAILEAGVPEVVVGCADPNPTVAGGGADFLRGRG 123
Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E E + + +L Q R + LK+A + D I + I+G S+ +
Sbjct: 124 VTVRMGVREQECRDLIADFLVWQTTARPYSILKLATTLDGKIATRDGQAAWISGEASRRE 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR A++VG GT AD+P LTCRL G P+ +I+ + +
Sbjct: 184 VHRLRTWCQAVIVGGGTFRADNPSLTCRLPGYDGPQPLAVIVSRSLPDPAQDSNLLSTRP 243
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLV 292
+I T A R + + LK L + RG L
Sbjct: 244 DQIIFWTTEAQSRSIRATRLTELGVTVWGLPCLKTPAETLDLNAGLQLLRKDRGCHYTLT 303
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFG 347
EGG +A S LVD + ++++ V+G+ + L F V + +F
Sbjct: 304 EGGGHLAGSMQRQGLVDELRIFQAMKVLGDEEARSAFAGRKALSMQDCWEFRLVEQGFFE 363
Query: 348 SDVCLEYIGKN 358
+D+ L K
Sbjct: 364 TDLYLRLRAKE 374
>gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Carnobacterium sp. AT7]
gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and
pirimidine reductase) [Carnobacterium sp. AT7]
Length = 351
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 123/353 (34%), Positives = 183/353 (51%), Gaps = 14/353 (3%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76
+R G T+ NP V +IVK G VIG+G G PHAEV A+ A E+ GAT YVTL
Sbjct: 1 MARKGKGWTTPNPLVGAIIVKGGRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVTL 60
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
EPCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI V + E
Sbjct: 61 EPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEEESQ 120
Query: 137 F-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
++ V K + +K A+S D I S I+G S+ QVH LR + I+V
Sbjct: 121 KLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAGIMV 180
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
GI T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T
Sbjct: 181 GIETIIKDDPQLTSR--TLNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTRRANK 238
Query: 256 LALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
L K+ + DLK+L+ +L +G+ S+L+EGGA + S + +VD
Sbjct: 239 EKLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDSILLEGGANLNFSALEEGIVDK 298
Query: 311 IILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357
I Y + +IG + +E L+ F R G D+ +E YI K
Sbjct: 299 IQSYIAPKIIGGKEAKTAVEGAGVHSLKNAFQIDRMTPVMVGEDLFVEGYIIK 351
>gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
17616]
gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
multivorans ATCC 17616]
gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
17616]
gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
multivorans ATCC 17616]
Length = 373
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 120/362 (33%), Positives = 177/362 (48%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++
Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD+++++
Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVRGVD-TPRQPQRVLVDSRLELPLDARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294
A L + D A A + + I DL +L+ L RG+ L VE
Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLVFHHIERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|269798015|ref|YP_003311915.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
gi|269094644|gb|ACZ24635.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008]
Length = 404
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 123/391 (31%), Positives = 179/391 (45%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 3 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI
Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V E + T + +T+K A+S D I + S IT S+ H
Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+LVGIGT+LAD+P+L CR + H P IILD
Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALA-----------------FRKKNINIIYCD 271
+ S++ I+V++ A K +I
Sbjct: 243 RTPTTSQVFDVENRKVHILVSKGCPKERIQALENVGTIVTVVESISTRKSKSTDVVIDIK 302
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG +
Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETMNFDKVVTYIGNTIIGGNDATPAVGG 362
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + +++ +E +
Sbjct: 363 RGFESLEASPQLTFTKTKVLDNNIRIEAYRQ 393
>gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2]
Length = 365
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 114/355 (32%), Positives = 173/355 (48%), Gaps = 9/355 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M A+ + G TS NP V ++VK+G ++G G G PHAEV A+ AGE+
Sbjct: 3 HQEYMELAISLAAATKGQTSPNPQVGAVVVKNGEILGMGAHLKAGTPHAEVHAIAAAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GA YVTLEPCSH+GR+PPCA II GI RV + DP+ VSG+G++ + GI V
Sbjct: 63 AKGADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E L+ ++ K ++T+K A S D S IT S+ VH
Sbjct: 123 VTGLLKEEADALNEPFFHFIKTKTPYVTIKAASSFDGKTAAKTGDSKWITSPESRQDVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR + DAIL G+ T++ D+P LT R +P+R++LD + ++ D+ +I+ + +
Sbjct: 183 LRHEHDAILTGVNTIIHDNPLLTAR-LPQGGKNPIRVVLDTNLRIPADANVIRDQSVKTI 241
Query: 246 IIVTENDDPVL--ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
I D L + + +K++L L R + +L VEGG+ + SFI
Sbjct: 242 IFTGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGERNIMTLFVEGGSEIHASFI 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLE 353
NS IILY + +IG + + G D+ +
Sbjct: 302 NSGFFQQIILYMAPKIIGGNKAIPFIGGDGANYVKDAPALEFTEIEKIGGDLRIT 356
>gi|154706505|ref|YP_001424060.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella
burnetii Dugway 5J108-111]
gi|154355791|gb|ABS77253.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella
burnetii Dugway 5J108-111]
Length = 354
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 111/354 (31%), Positives = 171/354 (48%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+
Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ ++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L
Sbjct: 59 KSLDDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ G+ + E F +Y KR +T K+A+S D I V +TG +
Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA
Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAA 297
V E D +K I + L ++ G+ L +E G
Sbjct: 238 ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGGT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
SF+ L++ ++Y + ++G +P+ + + V F DV
Sbjct: 298 CFQSFLKENLINRALIYIAPKILGSTAMPAF--QLPFSFSGYSVEWRQFREDVM 349
>gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
Length = 385
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 177/362 (48%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL +R + T NP V C+IVK+G VIG G T G HAE++A+++
Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAIL 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPHAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK----LLTILVGRGVTSLLVEG 294
A + A A R++ I+ K LL +L R V L VE
Sbjct: 241 GAPTLIFCGNLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDV 350
G + S + VD +++Y + ++G + + G D+
Sbjct: 301 GYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLGAPETLEGRVKLAFHNVERIGEDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
19965]
gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM
19965]
Length = 378
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 113/374 (30%), Positives = 175/374 (46%), Gaps = 21/374 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D ++MS AL ++ T TNP V ++VK+G V+G G G HAEV A +
Sbjct: 2 FINEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVVGEGWHKKYGDVHAEVNAFKN 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L +
Sbjct: 62 CKENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKEN 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ + + + L K A+S D I S I+ S+N
Sbjct: 122 GIQVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKISCYTGDSKWISSETSRN 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230
VH LR + AI+VG GT+ D+P LT R + + +P+RII+D
Sbjct: 182 DVHYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSS 241
Query: 231 SLDSKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
+DSK+ + V+ + D N+ DL K L IL +G
Sbjct: 242 PIDSKVFQDGGKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKG 301
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCV 341
+ S+L+EGGA A N ++VD + +Y + I+IG PS + + K +
Sbjct: 302 INSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGSGVSKISDAIKLKNI 361
Query: 342 RRDYFGSDVCLEYI 355
+ D E
Sbjct: 362 SINNLNEDTIFEAY 375
>gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
gi|2833460|sp|Q55158|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803]
Length = 368
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 101/355 (28%), Positives = 168/355 (47%), Gaps = 8/355 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D M L ++ +G T+ NP V +IV+ ++G+G G PH E+ AL EAG+
Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YV LEPC+H GR+PPC + II+ GI +VVV + DP+ V+G+G+ L Q GI V
Sbjct: 64 AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123
Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+E E L+ ++ +R K A++ D I A S +T +++ VH
Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR+Q A+++G TV D+P +G+ E +P+R++L L +++++ + +
Sbjct: 184 LRSQCQAVIIGGNTVRRDNP--LLTNHGVGEVNPLRVVLSRSLDLPIEAQLWDQDVAKTL 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+I + D K + + + ++ L R +L E G +A I
Sbjct: 242 VITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGGILAAEAIAM 301
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
V + + + +IG P+P+ E N + G D
Sbjct: 302 GTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLTDLHCQAIGPDWLFTGY 356
>gi|257899304|ref|ZP_05678957.1| riboflavin specific deaminase [Enterococcus faecium Com15]
gi|257837216|gb|EEV62290.1| riboflavin specific deaminase [Enterococcus faecium Com15]
Length = 364
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 105/364 (28%), Positives = 160/364 (43%), Gaps = 13/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
FM AA+ ++ G T TNP V IVK+G +I G + G HAEV A++
Sbjct: 8 MHQSFMLAAIAEAKKGKGNTFTNPLVGAAIVKEGKLISLGAHLHYGESHAEVNAIQNCSS 67
Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC+H G+ PPC Q I++ GI VV+ DP+ V+G+G ++L + G
Sbjct: 68 PEELFNSTLYVTLEPCNHQGKQPPCTQAIVQSGITTVVIGQLDPNPLVAGKGREFLQKHG 127
Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E + + Y R +ITLK AV+ D I + IT + ++
Sbjct: 128 IKVIVGVEEEKCRALNPFYNHFFEMDRPYITLKQAVTLDGKISIKKGSRHSITSPKAISR 187
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTAL 241
V R + I+VG TVL D+P L + + + K + KT
Sbjct: 188 VRKERGEYQGIVVGSETVLVDNPHLLPDAENIFPPVRIVLDRRGQILKSPELNLFQKTTS 247
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ L ++ I Y + + +GV SL VEGGA + +
Sbjct: 248 PVWIF------TENHELKEIFPHVTIFYTPKFSFAFFIETMRKKGVQSLYVEGGAKIHDA 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGKNL 359
F+ L D +I Y + + G S E + K+ + + G D+ + K
Sbjct: 302 FLAESLWDEVISYIAPKLFGGTSPMSFHSERLVSKDQQLEFLEVEQLGEDIRVRGKRK-Q 360
Query: 360 CLQE 363
C Q+
Sbjct: 361 CSQD 364
>gi|258424182|ref|ZP_05687064.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
gi|257845803|gb|EEV69835.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635]
Length = 347
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 164/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D ++ G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LNTHGDETLRDHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407]
gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 348
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
YGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 YGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+RIILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L++ +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS + + K F + G D +
Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 344
>gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
Length = 383
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 179/365 (49%), Gaps = 19/365 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++
Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + +E + +++R R + +K+A S D G+ S IT
Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPRRVLIDSQLDVPLDAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN-------IIYCDCRDLKKLLTILVGRGVTSLL 291
AP +I + D L DL ++L++L R V L
Sbjct: 241 G---APTLIFCGHLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELH 297
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFG 347
VE G + S + VD +++Y + ++G + + + G
Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIERIG 357
Query: 348 SDVCL 352
D+ +
Sbjct: 358 DDLRI 362
>gi|15964963|ref|NP_385316.1| riboflavin biosynthesis protein [Sinorhizobium meliloti 1021]
gi|307301034|ref|ZP_07580803.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
BL225C]
gi|307317768|ref|ZP_07597206.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
gi|15074142|emb|CAC45789.1| Probable riboflavin biosynthesis protein (deaminase/reductase)
[Sinorhizobium meliloti 1021]
gi|20385601|gb|AAM21351.1| riboflavin-specific deaminase/reductase [Sinorhizobium meliloti]
gi|306896530|gb|EFN27278.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83]
gi|306903989|gb|EFN34575.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti
BL225C]
Length = 401
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 180/394 (45%), Positives = 233/394 (59%), Gaps = 42/394 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM+AALR +R ++GLTSTNPSV C+IV G ++GR VTA GG PHAE QAL EAGE+
Sbjct: 8 DERFMAAALRLARRNLGLTSTNPSVGCIIVNKGTIVGRAVTAPGGRPHAETQALAEAGEK 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYV LEPCSH+G++PPCA +I G+ RVVV + DPD RV+GRG+ L GI V
Sbjct: 68 ARGATAYVALEPCSHHGKTPPCADALIASGVGRVVVSILDPDERVAGRGVVMLRGAGIDV 127
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D EG L AYL RQ +KR H+TLK+AVS D MIG G G V I+G +S+ QV +
Sbjct: 128 DIGTLHEEGGRVLEAYLMRQRKKRPHVTLKLAVSADGMIGRRGEGQVRISGAVSRAQVQV 187
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA++DAILVGIGT +ADDPELT R+ GL+E SP+RI+LD L L+SK+++TA P+
Sbjct: 188 LRAETDAILVGIGTAIADDPELTVRMPGLEERSPVRIVLDRRLDLPLESKLVRTARDVPL 247
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--------------------------------- 272
I+VT + +
Sbjct: 248 IVVTGDAGYPSSHEQGAGARRADEGQSSLPLSSGSTREPVLSPLAEAGTDYDARRGALEA 307
Query: 273 --------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ LL L RG++SLLVEGGA A SF+++ LVD I+L+ IGEGG
Sbjct: 308 AGAELLSADTIPDLLAALASRGISSLLVEGGARAARSFLDADLVDRILLFTGPAAIGEGG 367
Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I SP + + + F R +G D+ +Y +
Sbjct: 368 ISSPFQRTSVPEGFTLRRTARYGDDIFEDYERDS 401
>gi|82751356|ref|YP_417097.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
gi|82656887|emb|CAI81317.1| riboflavin specific deaminase [Staphylococcus aureus RF122]
Length = 347
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 160/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDDTLRDHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T + +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTLIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I II DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIICLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|283471035|emb|CAQ50246.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ST398]
Length = 347
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRDHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421]
Length = 366
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 9/350 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M L + G T+ NP V ++V DG+ +G G G PHAE AL AG+
Sbjct: 6 DEDWMERCLALAEQAWGRTTPNPLVGAVVVNDGLAVGEGFHPKAGAPHAEAFALRAAGDL 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YV LEPC+H+GR+PPC + I+ G++RVV+ + DP+ VSGRGL+ L GI V
Sbjct: 66 ARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTAGIEV 125
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + A+ R LK A++ D S I+G ++ + H
Sbjct: 126 SVGVLSDRCERLNEAFSHFMRTGRPFGVLKYAMTLDGKTATRTGHSFWISGQAARARTHR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA +DA++VG TV DDP+LT RL +P+R++L L ++++ +P
Sbjct: 186 LRAFADAVIVGGNTVRLDDPQLTVRLAE--GRNPLRVVLSRTLALPAEARLWLDQTPSPT 243
Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ DP + + + + D +L L S+L E G +A S +
Sbjct: 244 LVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLASYPCVSVLWECGGTLAWSALT 303
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
V +I + + ++G +P+ K V + G D
Sbjct: 304 DGSVQKVICFVAPCLVGGAQAYTPVAGEGFAKMHAAMRLERVHAEPVGED 353
>gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
Length = 384
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 17/364 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL +R + T NP V C+IV++G VIG G T G HAE++A+++
Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP +T R P R+++D ++ ++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVE-TPRQPQRVLIDSQLEVPPQAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I D+ A ++ DL +L L R V L V
Sbjct: 241 G--APTLIFCGNLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELHV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGS 348
E G + S + VD +++Y + ++G + E + G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLSAPETLEGRVKLAFHNVERIGD 358
Query: 349 DVCL 352
D+ +
Sbjct: 359 DLRI 362
>gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
phosphoribosylamino uracil reductase [Neisseria
meningitidis alpha14]
gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
phosphoribosylamino uracil reductase [Neisseria
meningitidis alpha14]
Length = 369
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I V+G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGA 296
I E D+ L + ++ I+ K L+ +L G+ L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|282917028|ref|ZP_06324786.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus D139]
gi|283770846|ref|ZP_06343738.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus H19]
gi|282319515|gb|EFB49867.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus D139]
gi|283460993|gb|EFC08083.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus H19]
Length = 347
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRDHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNLTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIELPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|21283440|ref|NP_646528.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
MW2]
gi|49486593|ref|YP_043814.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|297207517|ref|ZP_06923953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300911601|ref|ZP_07129045.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus TCH70]
gi|21204881|dbj|BAB95576.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
MW2]
gi|49245036|emb|CAG43497.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|296887853|gb|EFH26750.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300887022|gb|EFK82223.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus TCH70]
Length = 347
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|149909347|ref|ZP_01898003.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
PE36]
gi|149807664|gb|EDM67612.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp.
PE36]
Length = 440
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/400 (28%), Positives = 175/400 (43%), Gaps = 45/400 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D M A+ ++ T+ NP+V C++VK VIG G G HAEV AL
Sbjct: 40 FNDTDHLHMQRAIALAQKGRFTTAPNPNVGCVLVKADKVIGEGFHLRAGEAHAEVHALNS 99
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GAT YVTLEPCSHYGR+PPCA ++ + VV+ + DP+ +V+G+G+ L
Sbjct: 100 AGDDAQGATCYVTLEPCSHYGRTPPCAAALVNANVHEVVIAMVDPNPQVAGKGIAILIAA 159
Query: 123 GIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S L+ R E+R + LK+A S D + S ITG +++
Sbjct: 160 GIKVRVGLLSAQSHALNPGFILRMREQRPFVRLKMAASLDGRTALKNGESKWITGSAARS 219
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL----------------------NGLQEHSP 219
V + RAQ+ AIL TV+ DD L R Q P
Sbjct: 220 DVQVYRAQASAILSTASTVIMDDASLNVRYSELGTSQADYPLDYAEKSLIQAEQSQVRQP 279
Query: 220 MRIILDPHFKLSLDSKIIKTALL--------------APVIIVTENDDPVLA----LAFR 261
+R++LD H +L + L + V + +
Sbjct: 280 IRVVLDNHRRLDAHLEPSAKELKLFAQPGQILLVNGVKNTVNVATKNSSTEQLLVNESVS 339
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ I DL +L+T L + + L VE GA +A + + ++LVD II+Y + ++G
Sbjct: 340 RIEIEQDSHHNIDLNQLMTTLAQQNINDLWVEAGATLAGALLENKLVDEIIIYLAPKLMG 399
Query: 322 EGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ S L E F G D+ + +
Sbjct: 400 DSARGLAVLSELTEMAQVPTFSFTDITQIGDDLRITAKPE 439
>gi|46199007|ref|YP_004674.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Thermus thermophilus HB27]
gi|46196631|gb|AAS81047.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Thermus thermophilus HB27]
Length = 377
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 104/376 (27%), Positives = 174/376 (46%), Gaps = 21/376 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL E
Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALRE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + G +
Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKGGLERLRVGG 120
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ ++E+E + + Q + + LK A++ D + + I+ S+
Sbjct: 121 VQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRRV 180
Query: 183 VHLLRAQSDAILVGIGTVLADDP----------ELTCRLNGLQEHSPMRIILDPHFKLSL 232
H R A++VG+GTVL DDP + P++++LD +
Sbjct: 181 AHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTPP 240
Query: 233 DSKIIKTALL---APVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVG 284
+++ + A V++ P A + D ++ L L+
Sbjct: 241 TARLFRKGPRGEPARVLVFVGEGAPRARVSALEEAGARVVALPREGGRVDPERALAFLLE 300
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCV 341
GV +L+EGG +A +F+ LVD + L+ + ++GEG + +E
Sbjct: 301 EGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRLA 360
Query: 342 RRDYFGSDVCLEYIGK 357
RR++ G ++ LE +
Sbjct: 361 RREWLGENLWLEAYPE 376
>gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-93-1035]
gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-93-1035]
Length = 369
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 183/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGC 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
str. F0314]
gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
str. F0314]
Length = 367
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 123/364 (33%), Positives = 182/364 (50%), Gaps = 11/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D R M AL +R TS NP V C+I G ++G+G G PHAEV AL +
Sbjct: 2 FGENDVRMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMARGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
I + +E+E + +L+R R + +K A S D ++ S ITG ++
Sbjct: 122 DIRTESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAARE 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A++ G+GTVLAD+P+L R P+R+I D + D +II+
Sbjct: 182 DVQILRAESCAVVTGVGTVLADNPQLNVRAFP-TVRQPVRVIADSRLQTPPDCRIIRDGG 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAA 297
+I D L R ++ II +D + LL IL +G ++VE GA
Sbjct: 241 SPVLIATLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAV 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCL 352
++ +F+ L D ++LY++ ++G G + + G D+
Sbjct: 301 LSSAFLAEDLADELVLYQAPKILGCPGRSMFTLPENPAALTESPCWETRSVETLGGDIKW 360
Query: 353 EYIG 356
Sbjct: 361 ILRK 364
>gi|6572106|emb|CAB63090.1| riboflavin-specific deaminase / reductase [Bartonella henselae str.
Houston-1]
Length = 363
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 144/363 (39%), Positives = 214/363 (58%), Gaps = 13/363 (3%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGEEAR 68
A+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG A
Sbjct: 2 AIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGSLAH 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI V
Sbjct: 62 GATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIEVIE 121
Query: 129 MMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ ++ Y + ++R +TLK+A+S DN +G G G + I+G S Q H+LR
Sbjct: 122 GVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTHILR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
AQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P +
Sbjct: 182 AQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIPTWV 241
Query: 248 VTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + + + + +L +L RG+ S+L+EGG
Sbjct: 242 ICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKTGEI 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K LC
Sbjct: 302 FLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKTLCS 360
Query: 362 QEL 364
QEL
Sbjct: 361 QEL 363
>gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
12066]
gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
12066]
Length = 366
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/362 (30%), Positives = 181/362 (50%), Gaps = 19/362 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL+ + TS NP+V C+IV++G++IG G G PHAE+ A+ AG GA
Sbjct: 1 MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSAGSSVAGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPCSHYGR+PPCA+ +++ G++RVV+ DP+ +V+GRG++ L GI VD +
Sbjct: 61 TCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVDVGL 120
Query: 131 ESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L+ + V+ ++T+KI +S D I ++ S IT S+ V +RA
Sbjct: 121 YENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKMRAA 180
Query: 190 SDAILVGIGTVLADDPELTCRLNG-----------LQEHSPMRIILDPHFKLSLDSKIIK 238
SDAI+ G GTV+AD+P L R + +E P+R++LD +++ D ++
Sbjct: 181 SDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDYVMF 240
Query: 239 TALLAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ ++ ++N + + + +L+ L R +LVE G
Sbjct: 241 SQGKVLLVRPSLDSKNISEQINEHLEIFYAPCDFAGRICISAVLSELSKRQCRKVLVEAG 300
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ SF+ RL D + L+ + V+G + + K + + G D
Sbjct: 301 PTLVASFLQERLADELALFVAPKVLGVNAKTAFACDEVSSLDCLKPYKILTIKRSGKDFF 360
Query: 352 LE 353
+
Sbjct: 361 VR 362
>gi|320142810|gb|EFW34610.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 357
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 13 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 73 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 130
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 131 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 248
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 249 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357
>gi|57652067|ref|YP_186652.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus COL]
gi|151221874|ref|YP_001332696.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus str. Newman]
gi|161509986|ref|YP_001575645.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|258450849|ref|ZP_05698907.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
gi|262050319|ref|ZP_06023164.1| riboflavin specific deaminase [Staphylococcus aureus D30]
gi|262053078|ref|ZP_06025250.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
gi|284024817|ref|ZP_06379215.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus 132]
gi|294849930|ref|ZP_06790669.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
gi|304380637|ref|ZP_07363309.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|57286253|gb|AAW38347.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus COL]
gi|150374674|dbj|BAF67934.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus str. Newman]
gi|160368795|gb|ABX29766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|257861473|gb|EEV84276.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948]
gi|259159032|gb|EEW44104.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3]
gi|259161579|gb|EEW46176.1| riboflavin specific deaminase [Staphylococcus aureus D30]
gi|269941247|emb|CBI49636.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus TW20]
gi|294823269|gb|EFG39699.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754]
gi|304340832|gb|EFM06760.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315195936|gb|EFU26300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus CGS01]
gi|329314447|gb|AEB88860.1| Riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus T0131]
gi|329727002|gb|EGG63459.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 21189]
Length = 347
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|315657966|ref|ZP_07910840.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
M23590]
gi|315497002|gb|EFU85323.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis
M23590]
Length = 383
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/353 (31%), Positives = 165/353 (46%), Gaps = 14/353 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G
Sbjct: 40 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 99
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + L+Q GI V +
Sbjct: 100 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAVKDTTLPSKSD--EILTQAGIQVYQQ 157
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + + EK IT+K++ S D S IT K V+ LR
Sbjct: 158 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 217
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+L G TVLAD+P+ T R+ P+R+IL + + L I
Sbjct: 218 HDAVLTGNKTVLADNPQYTTRVKD--GKHPIRVILSRSGDVDFSLDMFHDQLSDIWIYT- 274
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
L N+ I Y + +L L +GV LLVE G V F+ +LV+
Sbjct: 275 ----EDATLTTTLPNVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 330
Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+I+Y + +IG G + + F V ++ LE K
Sbjct: 331 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 383
>gi|289550476|ref|YP_003471380.1| Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Staphylococcus lugdunensis HKU09-01]
gi|289180008|gb|ADC87253.1| Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Staphylococcus lugdunensis HKU09-01]
Length = 368
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/353 (31%), Positives = 165/353 (46%), Gaps = 14/353 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G
Sbjct: 25 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 84
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + L+Q GI V +
Sbjct: 85 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAVKDTTLPSKSD--EILTQAGIQVYQQ 142
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + + EK IT+K++ S D S IT K V+ LR
Sbjct: 143 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 202
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+L G TVLAD+P+ T R+ P+R+IL + + L I
Sbjct: 203 HDAVLTGNKTVLADNPQYTTRVKD--GKHPIRVILSRSGDVDFSLDMFHDQLSDIWIYT- 259
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
L N+ I Y + +L L +GV LLVE G V F+ +LV+
Sbjct: 260 ----EDATLTTTLPNVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 315
Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+I+Y + +IG G + + F V ++ LE K
Sbjct: 316 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 368
>gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
Length = 383
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 179/364 (49%), Gaps = 17/364 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++
Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + +E + +++R R + +K+A S D G+ S IT
Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPHRVLIDSQLDVPLDAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+I E D + A + DL ++L++L R V L V
Sbjct: 241 G--APTLIFCGELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELHV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGS 348
E G + S + VD +++Y + ++G + + + G
Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVERIGD 358
Query: 349 DVCL 352
D+ +
Sbjct: 359 DLRI 362
>gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
Length = 385
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 114/362 (31%), Positives = 174/362 (48%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL ++ + T NP V C+IV++G VIG G T G HAE++A+++
Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K+A S D G+ S ITG
Sbjct: 122 RDAGIEVRCGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+
Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPQAQILA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK----LLTILVGRGVTSLLVEG 294
A + A R + I+ K +L +L R V L VE
Sbjct: 241 GAPTLIFCGNLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + VD +++Y + ++G + + G D+
Sbjct: 301 GYKLNGSLLREGCVDELLVYLAPSLLGNDSMSMFNLSAPATLEGRVKLAFHNVERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|33862648|ref|NP_894208.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9313]
gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9313]
Length = 368
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 115/358 (32%), Positives = 174/358 (48%), Gaps = 10/358 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AG++A
Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H GR+PPC + +I G+RRVVV + DPD RV+G G+ L G+ V
Sbjct: 74 GGTLLVTLEPCCHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E E A++ R R LK A+S D + S I+G ++ VH LR
Sbjct: 134 AVLELEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARRWVHRLR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
Q DA++VG GTV ADDP LT R + E P R++L L +++ TA+ ++
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSRGHSDPE--PKRVVLSRSLDLPQQAQLWNTAVAQ-TLV 250
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ LA + ++ + +LL L + +L E G +A + +
Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPVSEPLELLQALAQQDCNRVLWECGPGLAAAALQQGC 310
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360
V + + + ++G +PL++ L V G+D L+Y C
Sbjct: 311 VQELAVVVAPKLLGGLPARTPLDDLGLTSMKEVVGLASGSLQSLGADWLLQYELSKHC 368
>gi|282927316|ref|ZP_06334937.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
gi|282592080|gb|EFB97105.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765]
Length = 347
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKKPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia vietnamiensis G4]
gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia vietnamiensis G4]
Length = 373
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 117/366 (31%), Positives = 171/366 (46%), Gaps = 13/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGCDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAYEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRVLVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGEIRANVLQSRGAEVVSLANMQGKVDLPGMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGSDAAAMFDLAAPTSLDGRTRLAFHSVERVGDDL 360
Query: 351 CLEYIG 356
+
Sbjct: 361 RIVARV 366
>gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5]
Length = 401
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 133/352 (37%), Positives = 183/352 (51%), Gaps = 5/352 (1%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
FM AA+R + +G TS NP+V ++VK G V+ RG A G PHAEV AL AG ARG
Sbjct: 34 FMRAAVREATKGLGRTSPNPAVGAVLVKGGRVVARGHHARAGGPHAEVVALRAAGARARG 93
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A Y TLEPC H+GR+PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ V
Sbjct: 94 ADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEVVTG 153
Query: 130 MESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E L+ + T E+R H+TLK AV+ D I + +TG ++ VH LR
Sbjct: 154 VLRETCDELNAHWFTFITERRPHVTLKAAVTLDGRIATRTGDARWVTGEPARRWVHRLRD 213
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+LVG GT ADDP LT RL G + P+R++LD L D + + AP ++
Sbjct: 214 RVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLDTDLSLPRDLNLFRQRSAAPTLVA 273
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + DL+ LL L RGVT LLVEGGA V F+ LV
Sbjct: 274 HASARARDLGPRIELLRCRRGPGGVDLRDLLARLAARGVTHLLVEGGARVHARFLQEGLV 333
Query: 309 DSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
D + ++ + + G GIP G + VR + G DV +
Sbjct: 334 DRVAIFVAPKIAGGDGIPLVAGRGPARMADALSLADVRVERVGDDVLVTGTP 385
>gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
14684]
gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM
14684]
Length = 374
Score = 204 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 15/372 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P + D ++ AL + G S NP V +I +DG V+ G + G PHAEV+A+
Sbjct: 4 PTTDTDRLHLARALELAAQGRGRVSPNPMVGAVITRDGEVVAEGWHSEYGAPHAEVEAIA 63
Query: 62 EAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG+ + GAT YV+LEPC H G+ PPC I+ GIRRVVV DDP + SGRGL L
Sbjct: 64 AAGDADLSGATLYVSLEPCCHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILR 123
Query: 121 QKGIIVDRMMES---EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+G+ V ++ + + R + K A++ D + S I+
Sbjct: 124 DEGVDVAVAGGELAARARLLNQPFRKQARTGRPWVLFKSAMTLDGKVATRAGDSKWISST 183
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S+ + H RA+ DA+ VGIGT LADDP+LT R P R++ D ++ LDS+++
Sbjct: 184 QSRERAHHWRAECDAVAVGIGTALADDPQLTAR-IPGVARQPRRVVFDSLARVPLDSQLV 242
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLLV 292
+ A P+ +V P A + + + + + L L GV S+L+
Sbjct: 243 QAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVVSALDQLGAVGVASILL 302
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFG 347
EGG +A +F+++ +D + L+ + IV+G PLE +E + + D G
Sbjct: 303 EGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLEGEGVETISEALRALTLDCDRVG 362
Query: 348 SDVCLEYIGKNL 359
D+ + K
Sbjct: 363 EDLLVSARLKEW 374
>gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Burkholderia cenocepacia J2315]
gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Burkholderia cenocepacia J2315]
Length = 373
Score = 204 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 118/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRILVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLSFHGIERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|240124968|ref|ZP_04737854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae SK-92-679]
gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-92-679]
gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-92-679]
Length = 369
Score = 204 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E D+ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIG-EGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P + V + G D+
Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC
25196]
gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira
multiformis ATCC 25196]
Length = 366
Score = 204 bits (517), Expect = 3e-50, Method: Composition-based stats.
Identities = 115/362 (31%), Positives = 175/362 (48%), Gaps = 7/362 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D RFM+ ALR + + TS NP V C++V+DG V+G G G HAE+ AL
Sbjct: 2 FSPTDYRFMAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGA AY+TLEPCSHYGR+PPCA +++ G+ +V+ + DP+ V+GRG L +
Sbjct: 62 AGPAARGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEA 121
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L+ +++R R + +KIA S D + S IT ++
Sbjct: 122 GIEVKTGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARR 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H RA+S A++ GIGTVLADDP+LT R PM +++D + LD+ +++ A
Sbjct: 182 DGHRWRARSCAVMTGIGTVLADDPQLTVRHI-HTSRQPMPVVVDRGLDIPLDAGLLRGAG 240
Query: 242 L-APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+E L + DL ++ L + +LVE G+ +
Sbjct: 241 ELVFTAAASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSGLNG 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
I + LVD ++Y + +IG L ++ G D+ + G
Sbjct: 301 GLIQADLVDEFVIYLAPCLIGNAARDMLKLPELSNLEDKRALKIHNVRAVGQDIRIIARG 360
Query: 357 KN 358
+
Sbjct: 361 PD 362
>gi|126727883|ref|ZP_01743711.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
HTCC2150]
gi|126702824|gb|EBA01929.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium
HTCC2150]
Length = 364
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 182/364 (50%), Gaps = 14/364 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + + D R+M A+ +G T NP+V C+IVKDG V+ R TA GG PHAE QAL
Sbjct: 1 MTL-ATDERWMRLAISLGAQRLGQTWPNPAVGCVIVKDGRVLARAATAPGGRPHAETQAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G A+G+T YV+LEPC+H G++PPCAQ +I+ + RVV + DPD RV G+G LS
Sbjct: 60 D--GINAKGSTVYVSLEPCAHTGKTPPCAQALIDARVARVVYGMRDPDCRVDGKGTSMLS 117
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + + + + R +TLK+A S D I A S ITG +
Sbjct: 118 AAGIAVTGPVLEKQALAANQGFITAITKGRPALTLKLATSFDGRIATASGQSQWITGPNA 177
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH++RA DAI+VG GT ADDP LT R G H P+R+I + +D ++
Sbjct: 178 RRAVHMMRANHDAIMVGAGTARADDPTLTQR-VGGIAHQPIRVICTSDLNIPMDGALVGA 236
Query: 240 ALLAPVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
AP+ ++ D A + + D+ + L +G+T + EG
Sbjct: 237 IKHAPLWLIHGQDAKASARDAWLQKGAKLIQVPSSPNGLDMTVAMQKLCEKGITRVFCEG 296
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A + ++LVD ++ + + + +G G L+ + F G D+
Sbjct: 297 GGQLAAGLLKAKLVDRLVGFTAGMALGGDGRACVGALNLDAIDETQAFQLENLREIGGDI 356
Query: 351 CLEY 354
+
Sbjct: 357 LHIW 360
>gi|167464708|ref|ZP_02329797.1| riboflavin specific deaminase [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 341
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 6/337 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M AL ++ G T NP V C++VKDG +IG G + G HAEV AL+ AG
Sbjct: 5 QDEMYMRLALDMAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGA 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
EA G+TAYVTLEPCSH+G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI
Sbjct: 65 EAEGSTAYVTLEPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIE 124
Query: 126 VDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
VD + +E A+ V +T+K A + D I S ITG +S+ VH
Sbjct: 125 VDVGLLAEEASAMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVH 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R Q ILV + TV+ADDP+L+ R + P+RI+ D +L L++++++ P
Sbjct: 185 TMRHQHQGILVSVDTVIADDPQLSTR-LTVPALQPVRIVADSRLRLPLEAQVLQDLDRQP 243
Query: 245 VIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
I++T + + DL+ + L R + S+L+EGG +
Sbjct: 244 TIVLTTELSSPERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNG 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ + LVD I+L+ + +IG P + E+
Sbjct: 304 AMLEQGLVDKIMLFVAPKIIGGKLSPQAISMEGWERM 340
>gi|49474161|ref|YP_032203.1| riboflavin biosynthesis protein ribD [Bartonella quintana str.
Toulouse]
gi|49239665|emb|CAF26036.1| Riboflavin biosynthesis protein ribD [Bartonella quintana str.
Toulouse]
Length = 365
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 145/366 (39%), Positives = 211/366 (57%), Gaps = 13/366 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65
M+AA+R + H+GLT NPSV +I ++ ++G GVTA G PHAEVQAL AG
Sbjct: 1 MAAAIRLAERHIGLTGENPSVGTIIARNDDSRGRCIVGYGVTAIHGRPHAEVQALHMAGP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPCSHYG++ PC +I GI RVVV + D D RV GRG+ L GI
Sbjct: 61 LARGATAYVTLEPCSHYGKTLPCVNALINSGISRVVVALTDLDKRVDGRGIALLRAAGIE 120
Query: 126 VDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +E + +R +T K+A+S DN +G G G++ I+G S H
Sbjct: 121 VVEGVLAEEAFEALCTYWCIRKLQRCAVTFKMAISADNGVGKKGQGAIKISGMTSHTHTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+LRAQ++AILVG+GT+L DDP+L+CRL G++ SP+RIILD + LD+K+++TA P
Sbjct: 181 ILRAQNNAILVGVGTILVDDPQLSCRLPGMERRSPIRIILDADLCIPLDAKVVQTAKTIP 240
Query: 245 VIIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ + + + + + +L +L RG+ S+L+EGG
Sbjct: 241 TWVICDVNFSKKSKKSALEQCGVSVYSVEMSNGYMQPLAILRLLYQRGINSVLLEGGVKT 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
F+N+ VD +I + + +++G+ I +P YL + F V FG+D C ++ K
Sbjct: 301 GEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ-FYEVETRMFGNDRCYKWRRKT 359
Query: 359 LCLQEL 364
LC QEL
Sbjct: 360 LCSQEL 365
>gi|49484015|ref|YP_041239.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257425881|ref|ZP_05602305.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428548|ref|ZP_05604946.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257431182|ref|ZP_05607559.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433863|ref|ZP_05610221.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus E1410]
gi|257436780|ref|ZP_05612824.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M876]
gi|282904343|ref|ZP_06312231.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C160]
gi|282906168|ref|ZP_06314023.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909085|ref|ZP_06316903.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911393|ref|ZP_06319195.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914562|ref|ZP_06322348.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M899]
gi|282919530|ref|ZP_06327265.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C427]
gi|282924908|ref|ZP_06332574.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C101]
gi|283958523|ref|ZP_06375974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293503640|ref|ZP_06667487.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510656|ref|ZP_06669361.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M809]
gi|293537197|ref|ZP_06671877.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M1015]
gi|295428344|ref|ZP_06820973.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590692|ref|ZP_06949330.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus MN8]
gi|49242144|emb|CAG40844.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257271575|gb|EEV03721.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275389|gb|EEV06876.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278130|gb|EEV08778.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281956|gb|EEV12093.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus E1410]
gi|257284131|gb|EEV14254.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M876]
gi|282313274|gb|EFB43670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C101]
gi|282317340|gb|EFB47714.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C427]
gi|282321743|gb|EFB52068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M899]
gi|282325088|gb|EFB55398.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327349|gb|EFB57644.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331460|gb|EFB60974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595961|gb|EFC00925.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus C160]
gi|283790672|gb|EFC29489.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920042|gb|EFD97110.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M1015]
gi|291095306|gb|EFE25571.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466547|gb|EFF09068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus M809]
gi|295127744|gb|EFG57381.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575578|gb|EFH94294.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus MN8]
gi|312437774|gb|ADQ76845.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus TCH60]
gi|315195682|gb|EFU26069.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus
subsp. aureus CGS00]
Length = 347
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 109/354 (30%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + + GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETIRDHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRHTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DKFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|153009855|ref|YP_001371070.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
49188]
gi|151561743|gb|ABS15241.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC
49188]
Length = 373
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 163/361 (45%), Positives = 225/361 (62%), Gaps = 7/361 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
++ D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL +A
Sbjct: 12 TADDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTAIGGRPHAEPQALADA 71
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSGRG L + G
Sbjct: 72 GEVARGATAYVTLEPCAHHGRTPPCAEALVRAGVARVVVAATDPDERVSGRGFAILREAG 131
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + L YL R +KR + LK+A+S D MIG G G + ITG +++ Q
Sbjct: 132 IEVVPGILAEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQLAITGPVARAQ 191
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H+LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L SK+++TA
Sbjct: 192 SHILRAQTDIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDSGLRLPLSSKLVQTADA 251
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-----KLLTILVGRGVTSLLVEGGAA 297
P+ I + + I +L+ L +G++S+LVEGGA
Sbjct: 252 QPLWIACGEEALPERRYELQAAGCRILATEAYDCRIALPELMDDLAAQGISSVLVEGGAG 311
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VA SF++ LVD + ++RS + IG G+ E ++ F +R+ +G D EY+
Sbjct: 312 VAKSFLDEGLVDRLAIFRSPVEIGSELGVAVDGLETHIADKFKILRQARYGDDAYTEYVR 371
Query: 357 K 357
K
Sbjct: 372 K 372
>gi|313673619|ref|YP_004051730.1| riboflavin biosynthesis protein ribd [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940375|gb|ADR19567.1| riboflavin biosynthesis protein RibD [Calditerrivibrio
nitroreducens DSM 19672]
Length = 385
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 119/356 (33%), Positives = 172/356 (48%), Gaps = 9/356 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G TNP V ++VK+G VIGRG G PHAE++AL++ E G
Sbjct: 8 MDEAIQLALMGKGYNYTNPIVGAVVVKNGKVIGRGYHTGFGMPHAEIEALKDCEESPEGG 67
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129
YVTLEPCS G++PPC II+ GI+RV + V DP+ SG+ ++ L+ GI V
Sbjct: 68 DLYVTLEPCSTTGKTPPCTDAIIKSGIKRVFIGVVDPNPNHSGKAIKILNDAGIEVFLGF 127
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + + ++++ + TLK A S D MI + S I+G S+ VH LR+
Sbjct: 128 NEHVCAEIIEDFTKFILKRQPYFTLKAASSIDGMIATSTGDSKWISGESSRIYVHYLRSV 187
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SD I+VGI TV DDP L R +E P++IILD +S +SK++K +I T
Sbjct: 188 SDGIIVGINTVKNDDPLLNVRNFN-REKEPLKIILDSKLSISPESKVVKDFGKYLIIATT 246
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHSFINSR 306
DD + R +I + L+ + + ++ VEGG V SFI
Sbjct: 247 VRDDSKMDNLKRYGVRVLICKEKNGFVDLMDLSDKLVSLNLLNIFVEGGGKVFASFIKEG 306
Query: 307 LVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
LVD + S VIG G+P E+ F D+ Y +
Sbjct: 307 LVDRFYHFISPKVIGGDGVPLFGDLNCEKIEDAYKCKLTDTKRFEEDILHIYKFND 362
>gi|331005895|ref|ZP_08329246.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
proteobacterium IMCC1989]
gi|330420291|gb|EGG94606.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma
proteobacterium IMCC1989]
Length = 397
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 111/395 (28%), Positives = 174/395 (44%), Gaps = 40/395 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S+ D RFMS A++ + T NP V C++VK+G VI G G HAE+ AL
Sbjct: 1 MTFSADDHRFMSLAIQLAEKGRYTTRPNPCVGCVLVKNGQVISEGWHYRAGEAHAEIHAL 60
Query: 61 EEAGE--EARGATAYVTLEPCSHYGRSPPCAQFI---IECGIRRVVVCVDDPDVRVSGRG 115
++ +A TAYVTLEPCSH GR+ CA + GI RVV ++DP+ V+G+G
Sbjct: 61 QQLPIEVKAENITAYVTLEPCSHQGRTGSCAMALADRTNTGIIRVVYGMEDPNPLVAGKG 120
Query: 116 LQWLSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
L L + G +V+ ME + + R +R + KIA S D MA S I
Sbjct: 121 LAILRESGCVVEGPLMEQQAAALNQGFFRRMQSQRPWVMAKIATSIDGRTAMASGESQWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDP 226
T ++ V LRAQS I+ GI ++L D+ L+ R +H P+R++LD
Sbjct: 181 TSAPARRDVQRLRAQSCGIISGIDSILHDNSRLSVRREDSDLANIDDILQHPPLRVLLDT 240
Query: 227 HFK----LSLDSKIIKTALLAPVIIVTENDDPVLALA-------------------FRKK 263
H + +L + I + A V++ T + ++
Sbjct: 241 HLRIADDDNLSANIFDPSSAAQVLVFTSTAVTDSKMEKVLSLNDSVGDVSVVSPMIKVEQ 300
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ L + ++LVE GA + FI++ LVD +I+Y++ +++G
Sbjct: 301 VATTETGHLCLEQVLTVLATRYECNTVLVETGATLLGGFIDAGLVDELIIYQAPVLLGSD 360
Query: 324 GIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
L + R G D+ ++
Sbjct: 361 ARALANVSLTRMQEKIALTITDRRMVGDDLRIKAR 395
>gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M13399]
Length = 369
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 11/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I V+G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGA 296
I E D+ L + ++ I+ K L+ +L G+ L+VE G+
Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ L D I+LYRS ++G G +P +M V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360
Query: 353 EYIGK 357
+
Sbjct: 361 VFRKN 365
>gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15]
Length = 348
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 123/345 (35%), Positives = 181/345 (52%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+RIILD ++ +++ ++ I T N +A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS +E + K F V G D +
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDYRFIGYPE 344
>gi|238019274|ref|ZP_04599700.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
gi|237863973|gb|EEP65263.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748]
Length = 404
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 177/391 (45%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 3 DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + GI
Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREAGIE 122
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V E + T + +T+K A+S D I S IT S+ H
Sbjct: 123 VVCPVCSEECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNDSSRRDGH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+LVGIGT+LAD+P+L CR + H P IILD
Sbjct: 183 ILRATHDAMLVGIGTILADNPQLNCRLTDTELSEALLDTSILDETIHVHQPDVIILDSLG 242
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALA-----------------FRKKNINIIYCD 271
+ S + + I V++ A K +I
Sbjct: 243 RTPTTSHVFEVDNRKVHIFVSKGCPKERIQALEQVGALVTVVESVATRKSKSTDIVIDIK 302
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG +
Sbjct: 303 KLSIDDILTKLGDFGYTSVLVEGGSAIISSFVETLNFDKVVTYIGNTIIGGTEATPAVGG 362
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + + +++ +E +
Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393
>gi|326563101|gb|EGE13374.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
12P80B1]
Length = 350
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 25/357 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D MA S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQS AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDSDNYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIYR 347
>gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
Length = 372
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 13/365 (3%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M +S+ D +M+ ALR + + T NP V C+IV+D ++G+G G PHAEV A
Sbjct: 1 MSTLSTSDHTYMNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG A GA YVTLEPCSH+GR+PPC Q +I +RVV+ + DP+ V+GRG+ L
Sbjct: 61 LRQAGALAEGADVYVTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTAL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+G+ V + + + L+ R ++ KIA S D ++ S ITG
Sbjct: 121 RAQGVEVVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V RAQS AIL GIGTVLAD+P +T R P+R+I+D +L L+S +++
Sbjct: 181 ARQDVQHWRAQSCAILTGIGTVLADNPSMTVR-FPTATRQPLRVIVDSKLQLPLNSNMLE 239
Query: 239 TALLA--PVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+LA PV++ D A + DL +LL +L R V +LV
Sbjct: 240 PTMLAQSPVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G + +++ L+D I Y + ++G + + G+
Sbjct: 300 EAGQGLNGGLLHAGLIDEFIFYYAPKLMGSAAHGMFAMPAFTTMQQVPDLQVLDVRQVGA 359
Query: 349 DVCLE 353
D+ +
Sbjct: 360 DIRVR 364
>gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
NCCP11945]
gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18]
gi|240112192|ref|ZP_04726682.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
NCCP11945]
Length = 361
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 182/358 (50%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E D+ L +I I+ DL L+ +L G ++VE G+ + +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L D I+LYRS ++G G +P + V + G D+ +
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357
>gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
MC0-3]
gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
MC0-3]
Length = 373
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 118/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRILVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEARTRLSFHGIERIGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|221135084|ref|ZP_03561387.1| riboflavin biosynthesis protein RibD [Glaciecola sp. HTCC2999]
Length = 381
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 109/370 (29%), Positives = 169/370 (45%), Gaps = 18/370 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S+FD M+ ALR ++ + + NP V C+I DG +IG G G HAEV AL
Sbjct: 4 TFSAFDYAMMARALRLAKQGIYTAAPNPMVGCVITLDGEIIGEGHHQQAGTAHAEVNALW 63
Query: 62 EAGE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ E + + ATAYVTLEPCSH GR+ PCA +I+ I RVV+ + DP +V
Sbjct: 64 QVNELIAQGKLVATQLKEATAYVTLEPCSHTGRTGPCADALIDAYIGRVVIAMQDPYSQV 123
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
SGRG+ L + I V+ + + +L+ +R +T K+A S D I +
Sbjct: 124 SGRGIAKLQRANIQVEVGLLAAESNALNRHFLSLVERQRPFVTAKLATSLDGKIALDNGV 183
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
S ITG ++ V RAQ IL G TV+ADDP+L RL L E+ + +P +
Sbjct: 184 SQWITGPEARQDVQAHRAQHMCILTGSQTVIADDPQLNVRLAELPENVQQTLAANPLAQY 243
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGV 287
+ + I + D + I + L L +G+
Sbjct: 244 TQPLRAIIDSQRLISEQYQIVRDANTQAPTHVFTPDNIPLNGNGKCDLSAVLDALGQQGI 303
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
S+ VE GA + + +N+RL+D +I+Y++ +++G + L + +
Sbjct: 304 NSVWVEAGAGLVGAMLNARLLDELIIYQAPLLLGADAKDAINIAKLTQMDQRIELDIIDT 363
Query: 344 DYFGSDVCLE 353
G D+
Sbjct: 364 RKVGQDIKHT 373
>gi|154248198|ref|YP_001419156.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
Py2]
gi|154162283|gb|ABS69499.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus
Py2]
Length = 383
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 144/369 (39%), Positives = 208/369 (56%), Gaps = 16/369 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHAEVQAL 60
D RFM+ AL+ + +G T NPSV ++V+ DG ++G TA G PHAE AL
Sbjct: 15 EDDERFMAEALKVGQSGLGRTWPNPSVGAVVVQHVDGRPHIVGAAATAPTGRPHAEPIAL 74
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARG+T YVTLEPCSH+GR+PPCA +I G+RRVV ++DPD RV GRG+ L
Sbjct: 75 AQAGEAARGSTLYVTLEPCSHHGRTPPCAGAVIAAGVRRVVAAIEDPDHRVKGRGVARLR 134
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + +E + HA R+V + R H+ LK+AVS D +AG +TG +
Sbjct: 135 AAGIWVTVGVGAEQALADHAGHIRRVTEGRPHVLLKMAVSADGKAALAGPRPAVVTGPEA 194
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + HL+RA +DAILVG+GTV ADDP LTCRL G ++ SP+R++LD + L+S +++T
Sbjct: 195 RARAHLMRAHADAILVGLGTVTADDPMLTCRLEGHEDRSPVRLVLDSGLDIPLESALVRT 254
Query: 240 ALLAPVIIVTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLV 292
A PV ++ D P A + L +L +L G+T L+V
Sbjct: 255 ASDVPVWVIAAEDAPAERAAALMERGVEVLRAPRGGIEGRLHLPAVLKLLGLLGITRLMV 314
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
EGG A A +F+ + LVD + ++ S +++G + PL + F V R G+
Sbjct: 315 EGGPATAAAFLEAGLVDEVAVFHSPVLLGPDAYHALAGRPLGRLFAPVGFAEVERAELGA 374
Query: 349 DVCLEYIGK 357
D + +
Sbjct: 375 DRLVRLWRR 383
>gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
Length = 369
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 113/354 (31%), Positives = 169/354 (47%), Gaps = 13/354 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G +
Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V
Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120
Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + +++R R + +K A S D +A S ITG +++ H
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L
Sbjct: 181 RARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLTARLLEGGSLLIFC 239
Query: 247 IVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ A A R + DL +L L RG+ L VE G + S
Sbjct: 240 GALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
+ R VD +++Y + ++G + G D+ +
Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRI 353
>gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Methylophilales bacterium HTCC2181]
gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Methylophilales bacterium HTCC2181]
Length = 363
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 108/355 (30%), Positives = 169/355 (47%), Gaps = 7/355 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
FM+ A+ ++ +G T NP V + VKD +VIG G A G HAEV AL+EAG
Sbjct: 4 DLHTEFMALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A+G+T Y+TLEPC H G++PPC I+ G+ +VVV DP+ V+G+GL L GI
Sbjct: 64 AGAKGSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGI 123
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + L+ ++ K ++ KIA S D +A S IT S+ V
Sbjct: 124 EVVEDVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
RA++ AIL G+GT+ D+P L R N + P R+I D H + +++I+K +
Sbjct: 184 QQWRARACAILTGVGTIHKDNPRLNVR-NLDESDQPFRVIADTHLSIDPEAQILKQKNII 242
Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ ++ A + + DL+ L+ L +LVE G +
Sbjct: 243 LMFCNDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLNGQL 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ LVD +I+Y++ I++G P + + + FG D+ +
Sbjct: 303 LELGLVDELIIYQAPIIMGGNANPLFHHPIMTSMEQKIRLKQIDIRQFGEDLRMI 357
>gi|254173530|ref|ZP_04880202.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
gi|214032222|gb|EEB73052.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4]
Length = 360
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 174/361 (48%), Gaps = 17/361 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SS D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E+
Sbjct: 1 MSSEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRRFGEKHAEVNAIED 60
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV + DP+ VSGRG++ +
Sbjct: 61 AKSRGHDVRGATMYVTLEPCSHWGKQPPCADRIIKEGFKRVVVAMVDPNPLVSGRGIEKM 120
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V+ + E E + ++ K +++K+A++ D I S ITG
Sbjct: 121 RKAGIEVEVGVLEDEARRLNEIFIKYVTTKMPFVSIKLALTLDGFIATETGSSQWITGEK 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + +
Sbjct: 181 ARLKVQELRRRHMAIMVGAGTVLADNPRLNCRLENCPE--KVKVILDRSGRVAEAIRSGR 238
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
L + +++L L G+ S+L+EGG +
Sbjct: 239 KFRL-----FEDGRVIFFTERPELFEGIAEAYPITGPEEILRKLGELGIDSVLIEGG-RI 292
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A F++ D L+ + G G P + + + G +
Sbjct: 293 ACQFLS--YADKFYLFYGPKLFGRGIKPFECLNVRDANEAPLLRIDSIERLGESFLVTAY 350
Query: 356 G 356
Sbjct: 351 P 351
>gi|330815405|ref|YP_004359110.1| Putative deaminase [Burkholderia gladioli BSR3]
gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3]
Length = 384
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 119/362 (32%), Positives = 182/362 (50%), Gaps = 17/362 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ D +M+ AL + + T+ NP V C+IVK GI+IG G T G HAEV+A+++A
Sbjct: 18 ALDRAWMARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDAR 77
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG L +
Sbjct: 78 ARGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E E + +++R R + +K+A S D + G S ITG ++
Sbjct: 138 AGIEVRGGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAAR 197
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H RA++ +IL GIGTV DDP+L R P R+++D L +++++
Sbjct: 198 ADGHAWRARACSILTGIGTVRGDDPQLNVRGID-TPRQPRRVLIDGRLDLPHEARLMAG- 255
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINI------IYCDCRDLKKLLTILVGRGVTSLLVEG 294
P++ E D P A A + DL +L L RG L VE
Sbjct: 256 -APPLVFCGELDAPARARADALRARGAEVVSLANARGSVDLAAVLAELGCRGDNELHVEA 314
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDV 350
G ++ + + + LVD +++Y + ++G + + G D+
Sbjct: 315 GRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPVSLESRVKLRFHDVERVGEDL 374
Query: 351 CL 352
+
Sbjct: 375 RI 376
>gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
Length = 379
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 120/377 (31%), Positives = 187/377 (49%), Gaps = 22/377 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL A
Sbjct: 3 SIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAMA 62
Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ +VSGRG++
Sbjct: 63 TKRASQAALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIKM 122
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI VD + S+ ++ +++E+ +T+K+A S D ++ S ITG
Sbjct: 123 LRDAGIEVDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITGP 182
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPH 227
S+ V LRA+++A++ GI TVL DDP L R + H P+R++LD
Sbjct: 183 ESRRDVQRLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDSR 242
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG- 286
+L+ +K+ ++ + + + I+ D +L + G
Sbjct: 243 ARLTSTAKLFTVTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAHLGK 302
Query: 287 -VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCV 341
S+L+E GA +A S I+ D +ILY++ ++G G + + +
Sbjct: 303 TYNSVLIEAGATLAGSVISQNHADELILYQAMKILGSNGRNLISLPDYTDMADIPSVELI 362
Query: 342 RRDYFGSDVCLEYIGKN 358
G D L ++
Sbjct: 363 DERKLGGDTRLTLKIRS 379
>gi|55981033|ref|YP_144330.1| diaminohydroxyphosphoriboxylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase RibD [Thermus thermophilus HB8]
gi|55772446|dbj|BAD70887.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD)
[Thermus thermophilus HB8]
Length = 377
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 103/376 (27%), Positives = 176/376 (46%), Gaps = 21/376 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL++
Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALQQ 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + G + +
Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKGGLERLRAGG 120
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ ++E+E + + Q + + LK A++ D + + I+ S+
Sbjct: 121 VQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRRV 180
Query: 183 VHLLRAQSDAILVGIGTVLADDP----------ELTCRLNGLQEHSPMRIILDPHFKLSL 232
H R A++VG+GTVL DDP + P++++LD +
Sbjct: 181 AHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTPP 240
Query: 233 DSKIIKTALL---APVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVG 284
+++ + A V++ P A + D ++ L L+
Sbjct: 241 TARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARVVALPREGGRVDPERALAFLLE 300
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCV 341
GV +L+EGG +A +F+ LVD + L+ + ++GEG + +E
Sbjct: 301 EGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRLA 360
Query: 342 RRDYFGSDVCLEYIGK 357
RR++ G ++ LE +
Sbjct: 361 RREWLGENLWLEAYPE 376
>gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
BAA-1200]
Length = 374
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 13/366 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D R M AL +R TS NP V C+I + G ++G+G G PHAEV AL
Sbjct: 7 NFSDTDRRHMRTALALAREGRFTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALR 66
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ARGATAYVTLEPC+H+GR+PPCAQ +I G+ RVV V DP+ +V+G+GL L+
Sbjct: 67 QAGELARGATAYVTLEPCAHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAA 126
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + E+E + H +L+R R + LK A S D ++ S IT ++
Sbjct: 127 AGIAAECGLFEAEARELNHGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH+LRA+S A+L GIGTVLADDP LT R +P R++LD +L +K++
Sbjct: 187 ADVHILRAESCAVLTGIGTVLADDPLLTVRGFP-VVRAPARVVLDSRLRLPQTAKLLADP 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGG 295
APV+++T DP AF + ++ + L +L G+ +L E G
Sbjct: 246 S-APVLLLTGEADPAKHAAFARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDV 350
A ++ + + + LVD I+LY++ ++G P + ++ + GS +
Sbjct: 305 ATLSGALLRADLVDEIVLYQAAKILGAPARGLFATPENPAALHAAPHWQTQSVETLGSGI 364
Query: 351 CLEYIG 356
Sbjct: 365 KWVLRR 370
>gi|238024083|ref|YP_002908315.1| putative deaminase [Burkholderia glumae BGR1]
gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1]
gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae]
gi|237878748|gb|ACR31080.1| Putative deaminase [Burkholderia glumae BGR1]
Length = 384
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 117/365 (32%), Positives = 181/365 (49%), Gaps = 17/365 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ D +M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A++
Sbjct: 15 SRDALDRAWMAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMK 74
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG
Sbjct: 75 DARSRGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAM 134
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + GI V + E E + +++R R + +K+A S D + S ITG
Sbjct: 135 LREAGIEVRGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGS 194
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ H RA++ +IL GIGTV DDP+L R P R+++D L +++++
Sbjct: 195 AARADGHAWRARACSILTGIGTVRRDDPQLNVRGID-TPRQPRRVLIDARLDLPHEARLM 253
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLL 291
P++ E D A A + DL +L L GRG L
Sbjct: 254 AG--PPPLVFCGELDASARARADALRARGAEVVSLASARGSVDLAAVLAELGGRGDNELH 311
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFG 347
VE G ++ + + + LVD +++Y + ++G + + G
Sbjct: 312 VEAGRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVG 371
Query: 348 SDVCL 352
D+ +
Sbjct: 372 EDLRI 376
>gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
DS-1]
gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans
DS-1]
Length = 372
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 142/369 (38%), Positives = 198/369 (53%), Gaps = 15/369 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQAL 60
+DA+FM AL + +G + NP+V C++V+D V+GRG T GG PHAE +AL
Sbjct: 4 PYDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAETEAL 63
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG ARGAT YV+LEPCSH+G++ PCA+ +I+ G+ RVV + DP+ V+GRG L
Sbjct: 64 ARAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFAALE 123
Query: 121 QKGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + L+ EKR +TLKIA S D I S ITG +
Sbjct: 124 ANGIEVTENVCAADAHHLNEGFFLTMSEKRPLVTLKIASSLDGYIATHEGHSQWITGDRA 183
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + HLLRA DAI+VG T + DDPELTCRL GL + SP+RII D +L L SK+++
Sbjct: 184 RERGHLLRATHDAIMVGSATAIVDDPELTCRLPGLGDRSPIRIIADGRLRLPLTSKLVRD 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC------RDLKKLLTILVGRGVTSLLVE 293
A PV I+T + + +++ L + RGVT LLVE
Sbjct: 244 ASKTPVWILTLPGGDGQRRKAFEDCGVTLIEVEAGEGGIMNMRAALEQIAARGVTRLLVE 303
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
GG+ +A S + SRLVD I +R+ +IG G P+ +++ F G D
Sbjct: 304 GGSRLAASLVLSRLVDRIEWFRAPKLIGGDGYPAVSALGVKKLDGAPAFDLRETVALGED 363
Query: 350 VCLEYIGKN 358
Y+ +N
Sbjct: 364 SLSSYVIRN 372
>gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia sp. 383]
gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp.
383]
Length = 373
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 118/362 (32%), Positives = 172/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDIDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGYDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRILVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAASELRANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDLAAPANLDARTRLSFHGFERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|289423250|ref|ZP_06425061.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
653-L]
gi|289156350|gb|EFD05004.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius
653-L]
Length = 433
Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 122/428 (28%), Positives = 188/428 (43%), Gaps = 71/428 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M AL ++ + S NP V +IVKD +IG+G G HAE A+++
Sbjct: 8 EKDQHYMKIALDLAKRGIARVSPNPLVGAVIVKDDQIIGKGYHEKYGGLHAERNAIKDYK 67
Query: 65 EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A GAT YVTLEPC HYG++PPC + IIE I+RVVV DP+ V+G+G+
Sbjct: 68 NRAINDPNLTIEGATMYVTLEPCCHYGKTPPCTEAIIENKIKRVVVASLDPNPLVAGKGV 127
Query: 117 QWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+ L + GI VD + + + + + KR +T+K A++ D + S IT
Sbjct: 128 KILEEVGIEVDIGVLKDEADRQNRIFRHYIINKRPLVTMKYAMTMDGKLATHTGKSKWIT 187
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRI 222
G ++ +VHL R ++ AI+VG+GTVLADDP L CRL +P+R+
Sbjct: 188 GHDARRRVHLDRLRNMAIMVGVGTVLADDPSLNCRLEDFDGFDKIKKDYSIEGLRNPIRV 247
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIV---------------------------------- 248
++D + +SKI+ +A II
Sbjct: 248 VVDSSLRTPFNSKIVTSAKDIKTIIFTISEDMEKIRAYEDRDCIVIKTKKKLYRSIGKKQ 307
Query: 249 -------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ D ++ DL+ L+ IL G+ S+L+EGG+ + S
Sbjct: 308 VQIGQEIQMDQDGHKYQEYQVYQERQGERFVVDLEDLVEILGQMGIDSILLEGGSQLNFS 367
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY-I 355
+ S +VD + Y + G SP+ ++ + D G D+ LE +
Sbjct: 368 ALESGIVDRVQAYIGPKIFGGEKAKSPIGGIGVDLPEDAYMLENIEFDSVGKDILLEGDL 427
Query: 356 GKNLCLQE 363
K C Q
Sbjct: 428 VK--CSQG 433
>gi|228475866|ref|ZP_04060576.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
gi|314936136|ref|ZP_07843483.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
hominis C80]
gi|228270021|gb|EEK11491.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119]
gi|313654755|gb|EFS18500.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp.
hominis C80]
Length = 347
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 167/354 (47%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
FM A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A ++A+
Sbjct: 3 EFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDKAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T Y++LEPC+HYG +PPC IIE G+ +V+ V D +S G L + GI V+
Sbjct: 63 GGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAVKDTT--LSSEGDIILEKAGIEVEY 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
E + + K IT+K++ S D S IT K V+ LR
Sbjct: 121 QYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DA+L G GT+ AD+P+ T R+ P+RIIL ++ +I L I
Sbjct: 181 THDAVLTGNGTIEADNPQYTTRIQE--GKHPIRIILSKRGQIDYSKQIFHDQLSEIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
++ +I IIY + +LK +L+ + RGV LLVE G + F+ S +
Sbjct: 239 ENHELK-----SPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNYL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D +I+Y + +IG G + + F + + ++ + K
Sbjct: 294 DHLIIYYAPKIIGGIGKNQFYQTDNVIDLADAPQFEVISTESIQQNIKMTLRKK 347
>gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Janthinobacterium sp. Marseille]
gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Janthinobacterium sp. Marseille]
Length = 363
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 118/360 (32%), Positives = 178/360 (49%), Gaps = 10/360 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + S D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL
Sbjct: 1 MEIHS-DVQGIRLALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQAL 59
Query: 61 EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A + G+T YVTLEPCSH+GR+PPCA +I+ + RVV + DP+ V+G+GL
Sbjct: 60 NDAADRGFDVSGSTVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLA 119
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + E+E + +L+R + + +K A S D M + S ITG
Sbjct: 120 RLEAAGIQVSCGVLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITG 179
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H RA++ AIL GIGTV+ DDP+LT R P RI++D H ++S +++
Sbjct: 180 DEARADGHYWRARACAILTGIGTVMEDDPQLTVRAID-TPRQPQRIVIDSHLQISPHARV 238
Query: 237 IKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ V + L + + DL L+ L R + L VE G
Sbjct: 239 LSGGGTLIVAAQANPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAG 298
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
+ S I VD +++Y + ++G+ PLE +KN G+D+ +
Sbjct: 299 FKLNGSLIREGCVDELLVYLAPTLLGDAQRMFNLPPLESLEHKKNLTFHEVKQIGADLRI 358
>gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876]
Length = 350
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 122/344 (35%), Positives = 179/344 (52%), Gaps = 11/344 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+R+ILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
+IG PS +E + K F + G D
Sbjct: 300 KIIGGRLAPSFVEGNGITKMKDAIEFKDISFTQIGKDYRFIGYP 343
>gi|326561735|gb|EGE12070.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 7169]
gi|326569043|gb|EGE19112.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC1]
Length = 350
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 112/357 (31%), Positives = 172/357 (48%), Gaps = 25/357 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D A S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA+S AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVD------------------LHMIPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N L + N + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDLDDYQVLNHDNTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIYR 347
>gi|303228926|ref|ZP_07315736.1| riboflavin biosynthesis protein RibD [Veillonella atypica
ACS-134-V-Col7a]
gi|302516340|gb|EFL58272.1| riboflavin biosynthesis protein RibD [Veillonella atypica
ACS-134-V-Col7a]
Length = 406
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 123/391 (31%), Positives = 182/391 (46%), Gaps = 41/391 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG+
Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGDN 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI V
Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + I + T + +T+K A+S D I S IT S+ H+
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHI 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCR------------------LNGLQEHSPMRIILDPH 227
LRA DA+LVGIGT+LADDP L CR N L+ H P IILD
Sbjct: 184 LRASHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDD-----------------PVLALAFRKKNINIIYC 270
+ D+K+ +I V + P ++ + I
Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVEELPTKSVRQGRTTDVAIDI 303
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG + +
Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTAAVG 363
Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+++ +E
Sbjct: 364 GTGFATLHEAPTLEFASSRILDNNIRIESYR 394
>gi|282857766|ref|ZP_06266975.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
W5455]
gi|282584436|gb|EFB89795.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens
W5455]
Length = 364
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 128/365 (35%), Positives = 175/365 (47%), Gaps = 11/365 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D M AL + +G T+ NP V C+IVKDG V+GRG + G HAE AL
Sbjct: 1 MRQQWTDEHHMRQALDLALRGLGKTTPNPMVGCVIVKDGEVVGRGWHDHLGGLHAEAAAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG++ARGAT YVTLEPCSH GR PPCA +++ G+ R V V DP+ +VSGRGL+ LS
Sbjct: 61 RDAGDKARGATVYVTLEPCSHQGRQPPCAPALVKSGVTRCVCAVGDPNPKVSGRGLKILS 120
Query: 121 QKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V ++E E + + Q +R +TLK A+S D + +A S ITG +
Sbjct: 121 DAGVETVCGVLEKEASWLNRGFFSLQTRRRPWVTLKAALSLDGSMALADGTSRWITGEAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + H LR ++DAIL+G GT+ DDP LT R P+ + D K
Sbjct: 181 RAESHRLRGENDAILIGSGTLRHDDPALTVRAVEGPSPRPVILCSDA-----AVLKGNYK 235
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
AL I+ V + DLK L L G+ +LVE G +
Sbjct: 236 ALRRDAIVFVPEGTAVPPERSGRVYAVSSSAGRPDLKAALEKLAELGLARVLVEAGPTIC 295
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+FI + L D L+ + + GEG + L G D+ LE G
Sbjct: 296 SAFIAAGLADEYQLFVAPVFTGEGRKITGSIRLRRMDDAIPMTLRDVRTAGRDLWLE--G 353
Query: 357 KNLCL 361
N C
Sbjct: 354 GNPCS 358
>gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
F0359]
gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis
F0359]
Length = 371
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 116/361 (32%), Positives = 180/361 (49%), Gaps = 13/361 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R +G TS NP+V C+IVKDG ++GRG G PHAEV AL EA E+A+GA
Sbjct: 1 MEEALNLARMGLGYTSPNPTVGCVIVKDGEIVGRGYHHQAGTPHAEVWALREAKEKAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC+HYG++PPCA+ +++ G+ +VV + DP+ V+G+G L GI V +
Sbjct: 61 TVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIVGL 120
Query: 131 ESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
S+ ++ + + I +K+A S D S IT ++ + H LR+
Sbjct: 121 MSKEAVKMNEVFIKNMIVHKPFIAVKLAQSLDGCTASRTGKSKWITNDTARQEGHYLRSL 180
Query: 190 SDAILVGIGTVLADDP---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
DAILVGI TV +D+P T R + P RIILD ++ L + ++ +I
Sbjct: 181 YDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRIILDSTGRIDLQALLVTDKQSPTII 240
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHS 301
+ TE A + +I D + L+ L +G+ S+L+EGG+ V S
Sbjct: 241 VTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGLMDTLYKKGICSILIEGGSTVIGS 300
Query: 302 FINSRLVDSIILYRSQIVI----GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
F + LVD + ++ I++ + E +++ +E K
Sbjct: 301 FFDENLVDKLYVFTGHIIMGGKGKSSVGGKGINELSEAPELEYESVAIRNNNIFIEAYVK 360
Query: 358 N 358
+
Sbjct: 361 D 361
>gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91]
Length = 369
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 114/354 (32%), Positives = 171/354 (48%), Gaps = 13/354 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G +
Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V
Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120
Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + +++R R + +K A S D +A S ITG +++ H
Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L
Sbjct: 181 RARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLAARLLEGGSLLVFC 239
Query: 247 IVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ A A R + I+ DL +L L RG+ L VE G + S
Sbjct: 240 GALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
+ R VD +++Y + ++G + G D+ +
Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRI 353
>gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU
1054]
gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
HI2424]
gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
cenocepacia AU 1054]
gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia cenocepacia HI2424]
Length = 373
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 118/362 (32%), Positives = 171/362 (47%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRILVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + R VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEARTRLSFHGIERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|329733229|gb|EGG69566.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 21193]
Length = 347
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 109/354 (30%), Positives = 164/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNS--LDTHGDETLRAQGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY +L +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTTNQTHIEIIYLKSCELTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|222148205|ref|YP_002549162.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
S4]
gi|221735193|gb|ACM36156.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis
S4]
Length = 366
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 179/357 (50%), Positives = 230/357 (64%), Gaps = 7/357 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFM+AA+R R H+G T TNPSV C+IV DG ++G VTA GG PHAE QA+ AG
Sbjct: 6 PDDQRFMAAAIRLGRSHLGQTLTNPSVGCVIVADGTIVGSAVTAIGGRPHAERQAIAVAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV V DPD RVSGRGL L+ GI
Sbjct: 66 EKARGATAYVTLEPCSHHGKTPPCADALVEAGVARVVVAVTDPDPRVSGRGLSILTDAGI 125
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E + L AYLTRQ ++R H+TLK+A+S+D MIG AG G V ITG +++ QV
Sbjct: 126 EVVTGVLEREARYGLAAYLTRQTKQRPHVTLKLALSRDGMIGRAGEGQVAITGPLARTQV 185
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LLRA+SDAILVGIGT ADDP+LT RL G SP+RI+LD +L + SK+++TA
Sbjct: 186 QLLRAESDAILVGIGTAKADDPDLTVRLAGQTHLSPLRIVLDRRLELPIGSKLVQTAGHV 245
Query: 244 PVIIVTENDDPVLALAFRKKNIN------IIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P + + + + DL LL L +G++SLLVEGGAA
Sbjct: 246 PTVCACGEPSTFTCTESFEASRTALQAAGVDVWPVADLDDLLRQLAVQGMSSLLVEGGAA 305
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +F+N+ LVD I LY+ IG G+ SPL + +NF +R FG+D EY
Sbjct: 306 AAKAFLNAGLVDRIHLYQGPDEIGGSGLASPLTPANIPENFRHLRSVNFGADRFDEY 362
>gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Candidatus Nitrospira defluvii]
gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Candidatus Nitrospira defluvii]
Length = 373
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 118/366 (32%), Positives = 175/366 (47%), Gaps = 16/366 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SS D +M+ ALR + G TS NP V L+V G ++G+G G PHAEV AL +
Sbjct: 1 MSSRDREYMTLALRLAAKGRGSTSPNPMVGALVVTRGRIVGQGSHRKAGGPHAEVIALSQ 60
Query: 63 AGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG A+G T YVTLEPCSH R+PPC ++ G+RRVVV + DP+ +V G G+ L++
Sbjct: 61 AGSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTR 120
Query: 122 KGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI VD L+ R LK ++ D I A S IT +S+
Sbjct: 121 AGIRVDVGCCEAEATQLNQAYLHWVKTGRPFTILKAGMTLDGQIATASGESQWITDEVSR 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPE----LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
Q H LRA DAILVGIGTVL D+P+ +T P+RI++D ++ L +K+
Sbjct: 181 QQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTTGRQPLRIVVDSRLRIPLKAKV 240
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLL 291
++ A +I T + +K +L L L GVT++L
Sbjct: 241 LEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAGGHVNLPVLWARLGQLGVTTVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYF 346
VEGG+ + + + + L ++ Y + +++G VR +
Sbjct: 301 VEGGSDLNAAVLQAGLPQRLMCYVAPLLLGGQDAKGLFGGRSPRRLRSAVPLKNVRIEPV 360
Query: 347 GSDVCL 352
G D+ +
Sbjct: 361 GRDMLI 366
>gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 371
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 122/366 (33%), Positives = 171/366 (46%), Gaps = 14/366 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+
Sbjct: 1 MTNIKDLESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAI 60
Query: 61 EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
++A E+ +G+T +VTLEPC HYGR+PPC IIE GI +V+ V D + V G+G+
Sbjct: 61 KDAKEKGYDLKGSTMFVTLEPCCHYGRTPPCTNAIIEEGISEIVIGVLDQNPVVKGQGVN 120
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + E E + + T EKR + LK+A S D I S IT
Sbjct: 121 ILKSHGIKVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKTGDSKWITS 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ H LR ++ AILVG T L D+P LT R E P+RI++D K+ I
Sbjct: 181 EKSRQFAHQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPVRILIDKRLKVPPTYNI 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLL 291
VI L K+N+ I++ + + +L L R + LL
Sbjct: 240 YNNEAKTIVITSKLASQENLKRLSEKENVEIVFLDLDENENFKIDDILKTLYAREIVHLL 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFG 347
VEGG V I R D I ++ + I+IG+ GI +E+
Sbjct: 300 VEGGRGVITDLIKERKFDKISIFTAPILIGDDGISWLGYLGIEKIQDSLKLKVEDFKVLD 359
Query: 348 SDVCLE 353
D E
Sbjct: 360 KDFYFE 365
>gi|13476938|ref|NP_108508.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
MAFF303099]
gi|14027701|dbj|BAB54294.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti
MAFF303099]
Length = 376
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 162/364 (44%), Positives = 215/364 (59%), Gaps = 10/364 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59
++ D RFM+AALR SR + G TSTNPSV +IV+D +++G GVTA GG PHAE +A
Sbjct: 12 TALDRRFMAAALRLSRRNAGRTSTNPSVGTIIVRDDGAGPMIVGTGVTAVGGRPHAETEA 71
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ GI RVV DPD RVSG+G L
Sbjct: 72 LAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGIARVVGAASDPDPRVSGKGYAIL 131
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI+V + + A + KR +TLK+A+S D IG G G V ITG I
Sbjct: 132 RAAGIVVVEKVLATEAAEQMAGYLIRSLRKRPEVTLKLALSSDGKIGRKGAGQVAITGEI 191
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V+L+RA+SDAIL+GIGT L DDP LT RL GL+ SP RIILD +L SK++
Sbjct: 192 ARRDVYLMRAESDAILIGIGTALEDDPALTVRLPGLENRSPARIILDRQIRLPEASKLVS 251
Query: 239 TALLAP-----VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
P + + L A + + L +LL L G+ S+LVE
Sbjct: 252 GVDRVPLYVAACLEADPHRRSALERAGVRFIGTETHDGVVALPELLEDLAALGMASVLVE 311
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA VA +F++ LVD I+L++ IGE GI SP++ ++ F +R FG D E
Sbjct: 312 GGAQVAKAFLDEDLVDRIVLFQGPEAIGEDGIASPVDADHIPAGFRKLREMRFGEDSYAE 371
Query: 354 YIGK 357
++
Sbjct: 372 WVRD 375
>gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 356
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 121/368 (32%), Positives = 174/368 (47%), Gaps = 19/368 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M AL + G TS NP V C+I +DG ++G G G PHAE +AL
Sbjct: 1 MKSRVEDVTYMRRALSLAMRGTGYTSPNPMVGCVIARDGEILGEGYHRRCGAPHAEREAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A GATAYVTLEPCSH+G++PPCA ++E GI R VV DPD RVSGRG++ L
Sbjct: 61 MSAVGGVAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V + E E + ++ + +T+K A+S D + + S IT S
Sbjct: 121 SAGVDVSVGVLEEECRWLNRGFIKGALAGLPWVTVKAAISLDGDMSLPDGKSKWITNGTS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + HLLR++SDA++VG GTV ADDP LT R + P+ I
Sbjct: 181 RVKAHLLRSESDAVMVGRGTVTADDPALTVRDVPGKSPIPVVI-------------GGID 227
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + + DL+ +L L G GV LLVEGG +
Sbjct: 228 ENRRVFLDDRCIIYTKRFAGLNGERVIPEKNGQVDLETVLRDLYGSGVRRLLVEGGGRII 287
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
S ++ LVD + L+ + ++G+G +P L N + D+ LE +
Sbjct: 288 SSLLSDGLVDEVSLFVAPKIMGQGQTMTPGMILSSMEESMNLSLISCRGQDGDLWLEGVF 347
Query: 357 KNLCLQEL 364
C ++L
Sbjct: 348 P--CSRDL 353
>gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis
L2TR]
gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis
L2TR]
Length = 375
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 122/364 (33%), Positives = 173/364 (47%), Gaps = 14/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
FD + M AL +R + T NP+V C+I V+G G G PHAEV AL AG+
Sbjct: 9 FDHQMMHRALMLARRGLMTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHALRAAGQ 68
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGATAYVTLEPCSH GR+PPC +IE G++RVVV + DP+ RVSG G+Q L GI
Sbjct: 69 KVRGATAYVTLEPCSHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGIS 128
Query: 126 VDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
VD + L+ R +R +TLK+A S D ++ S IT S++ V
Sbjct: 129 VDVGVLQLAAESLNPGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQ 188
Query: 185 LLRAQSDAILVGIGTVLADDP--------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
RAQ+DAIL G T+LADDP R P+RII+D +++ ++++
Sbjct: 189 FFRAQADAILSGAATILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARV 248
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ ++ T P + I L L+ L R + L E GA
Sbjct: 249 FDSPAPVWLVRTTPGK-PSCHPHCHELIIAADPNGKVSLPALMVELANREINQLWTECGA 307
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
+A + I +L D +++Y S ++G G F + R G D L
Sbjct: 308 NLAGALIQQQLCDRLMIYSSGQLLGHHGRSVIDMNEPLNLASAPRFKIIDRRQVGPDQRL 367
Query: 353 EYIG 356
+
Sbjct: 368 VAVP 371
>gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
49989]
gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC
49989]
Length = 368
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 118/356 (33%), Positives = 179/356 (50%), Gaps = 17/356 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++MS AL + +G TS NP V +IVK+G +IG+G G HAEV+A+++A +
Sbjct: 10 EKYMSMALELAEKGLGTTSPNPMVGAVIVKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKD 69
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-- 122
GA YVTLEPCSH GR+P C+ +I+ I RV + + DP+ V+G G++ L
Sbjct: 70 YDIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALI 129
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
V + E + +L EK ++ K ++ D I S IT S+
Sbjct: 130 KCEVGILEERC-RQLNKVFLKYVTEKMPYVIFKSGITLDGKIATGTGKSKWITSEESRKD 188
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VHLLR++ AI+VGIGTVLADDP LT R G + P++II+D +L L++K++ +
Sbjct: 189 VHLLRSRCSAIMVGIGTVLADDPRLTARFEG--AYDPVKIIVDSKLRLPLEAKVVGEDCI 246
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + L + I + DL+K + L + S+L+EGGA +A S
Sbjct: 247 VGCCENVSRE-KIEELTNKGVKIIKAGKNKVDLRKFMAELAKLEIDSVLLEGGATLAASM 305
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYFGSDVCL 352
+LVD I LY + ++ G G S LE ++ + DV L
Sbjct: 306 FKEQLVDEIRLYMAPMIFGSG--KSFLEGELDIDDVSDAIRIEGMKVEKINEDVVL 359
>gi|15924761|ref|NP_372295.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927345|ref|NP_374878.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
N315]
gi|148268246|ref|YP_001247189.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus JH9]
gi|150394314|ref|YP_001316989.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus JH1]
gi|156980087|ref|YP_001442346.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315858|ref|ZP_04839071.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255006556|ref|ZP_05145157.2| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794151|ref|ZP_05643130.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
gi|258420684|ref|ZP_05683623.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
gi|258438334|ref|ZP_05689618.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
gi|258443792|ref|ZP_05692131.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
gi|258446003|ref|ZP_05694179.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
gi|258448269|ref|ZP_05696396.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
gi|258454203|ref|ZP_05702174.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
gi|282893262|ref|ZP_06301496.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
gi|282927897|ref|ZP_06335508.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
gi|295406080|ref|ZP_06815888.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
gi|296276038|ref|ZP_06858545.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
MR1]
gi|297244995|ref|ZP_06928872.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
gi|13701564|dbj|BAB42857.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
N315]
gi|14247543|dbj|BAB57933.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
Mu50]
gi|147741315|gb|ABQ49613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus aureus subsp. aureus JH9]
gi|149946766|gb|ABR52702.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus JH1]
gi|156722222|dbj|BAF78639.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
Mu3]
gi|257788123|gb|EEV26463.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781]
gi|257843288|gb|EEV67698.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719]
gi|257848378|gb|EEV72369.1| riboflavin specific deaminase [Staphylococcus aureus A9299]
gi|257851198|gb|EEV75141.1| riboflavin specific deaminase [Staphylococcus aureus A8115]
gi|257855245|gb|EEV78184.1| riboflavin specific deaminase [Staphylococcus aureus A6300]
gi|257858508|gb|EEV81384.1| riboflavin specific deaminase [Staphylococcus aureus A6224]
gi|257863655|gb|EEV86412.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937]
gi|282590407|gb|EFB95486.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102]
gi|282764580|gb|EFC04706.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117]
gi|285817450|gb|ADC37937.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Staphylococcus aureus 04-02981]
gi|294969077|gb|EFG45098.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819]
gi|297178075|gb|EFH37323.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796]
gi|315130592|gb|EFT86578.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727599|gb|EGG64055.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus 21172]
Length = 347
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 109/354 (30%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240355]
Length = 361
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 125/359 (34%), Positives = 183/359 (50%), Gaps = 11/359 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E ++ L +I I+ DL L+ +L G ++VE G+ + +F+
Sbjct: 240 LERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L D I+LYRS ++G G +P + V + G D+ + +
Sbjct: 300 AEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKND 358
>gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
Length = 370
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 122/370 (32%), Positives = 185/370 (50%), Gaps = 22/370 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP S D FM+ A++ ++ + T NP V C++VK+G +IG G G HAEV AL
Sbjct: 1 MP-SHID--FMARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNAL 57
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG A+GATAYVTLEPCSH+GR+PPC+ +I+ GIR +V + DP+ VSGRG + +
Sbjct: 58 AQAGSAAQGATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMR 117
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI + + L+ +++ ++ +KIA S D MA S ITG +
Sbjct: 118 AAGIEIISGVLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNA 177
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHF 228
+ V LRA+S AI+ GI ++LADD LT R + E P+R+ILD H
Sbjct: 178 RADVQRLRARSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHG 237
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
++ D K++ + V + P + +L++LL L R
Sbjct: 238 RIRPDHKVVNQSGQTLVCVRHGVQLPNFVES----LALNHGESGLNLRELLKALADRQCN 293
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDY 345
+LVE G+ +A FI LVD ++ Y + ++G P +E + +
Sbjct: 294 EVLVETGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARPVFAMDIETMADKIPVQISDVRH 353
Query: 346 FGSDVCLEYI 355
FG+D+ Y
Sbjct: 354 FGNDIRFTYT 363
>gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
Length = 373
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 112/360 (31%), Positives = 175/360 (48%), Gaps = 14/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ + + T NP V C++V+ G ++G G + G HAEV AL +A
Sbjct: 6 DRAYMARALKLAWRGLFTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPC H GR+PPC + +IE G+ RVV + DP+ +V+G+GL L + G+ V
Sbjct: 66 ARGATCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQV 125
Query: 127 DRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E L+ ++ V+ R + K+A+S D +A S IT ++ V
Sbjct: 126 EYGLLQEEAQALNPGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQR 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
RA+S AIL GIGTV+ DDP L R + P R+ILD +S ++++
Sbjct: 186 WRARSSAILTGIGTVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLLS 245
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGA 296
+ +L + + + DLK L+ +L R + L VE GA
Sbjct: 246 LPGPVLIACADGEQPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVECGA 305
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A S + + L+D ++LY + ++GE ++ G D L
Sbjct: 306 RLAGSLLQAGLMDELVLYIAPKLMGEASLGLLRLPGIQTMEDCIQVDIKEIRAVGRDWRL 365
>gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
ATCC 35110]
gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium
ATCC 35110]
Length = 368
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 100/362 (27%), Positives = 161/362 (44%), Gaps = 13/362 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D ++ L+ ++ G S NP V +IV +G +IG G G PHAEV A+
Sbjct: 6 SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVIVHNGKIIGEGFHEVYGGPHAEVNAIGSVA 65
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ + +T YV LEPC+H+G++PPCA II I RVV+ DP VSG+G + L
Sbjct: 66 QPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRHA 125
Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + + L+ ++ ++KR + LK A + D I S IT S+
Sbjct: 126 GVEVKVGVLESEALRLNEAFIHFHIQKRPFVALKFAQTLDGKIATTSGDSKWITNKASRT 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR+ AIL+G T LADDPELT R +P+R++LD + L +KI A
Sbjct: 186 LGHQLRSWHSAILIGTNTALADDPELTVRHVE--GKNPVRVLLDRRLSVPLTAKIFNAAA 243
Query: 242 LAPVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
V ++N + + ++ +L + + S+ VEGG+
Sbjct: 244 NTLVFTSSQNTNHPKVGKLNEKNVEVFFVTENEAGLSFSEIFQVLYEKKLLSVYVEGGSG 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
V I + + + ++G G+ + + + + D+ +E
Sbjct: 304 VYSRLIQEGYCEKFYGFIAPKIVGGDGLATFRPLEITNMAEAVSLRFHQVQMLDGDIFIE 363
Query: 354 YI 355
Sbjct: 364 GY 365
>gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8]
Length = 369
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 116/369 (31%), Positives = 172/369 (46%), Gaps = 16/369 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
FM AAL + +G + NP V +IV+DG +I G G HAE A + G
Sbjct: 4 EDFMQAALDSAENGMGFVNPNPMVGAVIVRDGKIIASGFHERYGSLHAERSAFAQCNKKG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
GA YVTLEPC H+G+ PPC + I GIR V + DP+ VSG+G +L +GI
Sbjct: 64 INCAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGI 123
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E L+ + + +TLK A++ D S ITG ++ V
Sbjct: 124 GVTEGVLKEKCDKLNEIFFKFITTGLPFVTLKYAMTLDGKTACYTGESKWITGETARRHV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R + AI+ GIGTVLADDP LTCR+ P+R+I D H ++ LDS I++TA
Sbjct: 184 HRERLRHAAIMAGIGTVLADDPLLTCRIEN--GRDPLRMICDTHLRIPLDSNIVRTAEKV 241
Query: 244 PVIIVTENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P +IV +D A + DL L+ +L + + S+L+EGG +A
Sbjct: 242 PTMIVCGEEDAQKADALKNAGCQIVCLPNGNGGTDLSALMKMLGEKKIDSVLIEGGGTLA 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
S + +VD ++ Y + + G +P+ + D+ +E
Sbjct: 302 WSALECSIVDKVMAYTAPKIFGGKSPFTPVGGKGAKSPAKAFMLEDTTVTALDGDILIEG 361
Query: 355 IGKNLCLQE 363
K C ++
Sbjct: 362 RVKK-CSRD 369
>gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chromohalobacter salexigens DSM 3043]
gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chromohalobacter salexigens DSM 3043]
Length = 380
Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 183/366 (50%), Gaps = 17/366 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
M+ AL+ +R T NP V C++V G ++G G AY G PHAEV AL EAG+ A
Sbjct: 7 EACMARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREAGDAA 66
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPCSH+GR+PPCAQ +I+ G+RRVVV + DP+ +V+GRG+ L + GI VD
Sbjct: 67 AGATVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVD 126
Query: 128 RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + L+ +++ + LK+A+S D MA S ITG ++ +V L
Sbjct: 127 VGLLATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRL 186
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLDSKIIK 238
RA++ A++ G+ +V+ D+ LT R + + P+R+++D +L L + ++
Sbjct: 187 RARASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLR 246
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV----GRGVTSLLVEG 294
V T ++ AL+ + ++ D L +L +L+E
Sbjct: 247 EPGRTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLET 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
GA +A + ++ +D + L+ + ++G P LE ++ G D
Sbjct: 307 GATLAGAMLDLEAIDEMHLFVAPTLLGGEARPLFALPGLERMAQQRPLHIDDIRAVGQDW 366
Query: 351 CLEYIG 356
+
Sbjct: 367 RIVARP 372
>gi|258415855|ref|ZP_05682126.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
gi|257839448|gb|EEV63921.1| riboflavin specific deaminase [Staphylococcus aureus A9763]
Length = 347
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 109/354 (30%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDEALRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|223939370|ref|ZP_03631249.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
gi|223891974|gb|EEF58456.1| riboflavin biosynthesis protein RibD [bacterium Ellin514]
Length = 365
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 165/363 (45%), Gaps = 16/363 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL +R G TS NP V ++VK G VIGRG G PHAEV+AL++A G +
Sbjct: 1 MQNALALARRAYGNTSPNPLVGAVLVKHGKVIGRGWHHRAGQPHAEVEALKDAASKGNDP 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIV 126
+GAT YVTLEPC +GR+PPC + I I++VVV DP+ +GR L + G +V
Sbjct: 61 KGATLYVTLEPCCTHGRTPPCTEAIKAAKIKKVVVAATDPNPAHAGRAFPLLERAGIKVV 120
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ E ++ V + +K A++ D I AG S ITG ++ L
Sbjct: 121 SGILAEEAGELNESFNHWIVHGTPLVIVKAAMTLDGKIATAGGESKWITGEKARAYGMKL 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTALLA 243
R +DAILVG+ TVLADDP LT R+ E RIILD + L +K++
Sbjct: 181 RQGADAILVGVNTVLADDPSLTVRVQSRNKSEEKKFRRIILDSQARTPLKAKVVSDEFRE 240
Query: 244 PVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
IV P + DL+ L+ L G V SLLVEGG V
Sbjct: 241 FTTIVVLKSAPERRVTALARQANVLVAPEKQGKIDLRWLVKKLGGENVMSLLVEGGGEVN 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEY 354
SF+ RL + + + ++G + V G+D+ L
Sbjct: 301 ASFLLGRLAHRVAFFYAPKILGGRDARKGVAGDGSTTLADAIKLKDVEWRRLGADLLLTA 360
Query: 355 IGK 357
Sbjct: 361 RVD 363
>gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
Length = 354
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 123/353 (34%), Positives = 184/353 (52%), Gaps = 7/353 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
++M A++ ++ G T NP V ++VKDG ++G G G PHAEV A+ AG A
Sbjct: 2 KQYMEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAAA 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPCSH+G++PPCA I+E GI+RVV+ + DP+ V+G G+ L G+ VD
Sbjct: 62 YGATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVD 121
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+E+E + A+L KR ++ LK A S D + + S +T ++ VH L
Sbjct: 122 VGLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHEL 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA DAIL GIGTVLADDP LT R P R++LD +L S + +TA PV+
Sbjct: 182 RATVDAILTGIGTVLADDPSLTVR-LDRVTRQPKRVVLDRDLRLPFASTLARTAEDVPVL 240
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ T +D+ + I + +L L G+ +L+E G + S ++
Sbjct: 241 LFTSSDEAERRERAKAAGIELFDYTSLGT--VLETLYANGIGRVLIEAGPTLVTSLLDGG 298
Query: 307 LVDSIILYRSQIVIGEG-GIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
VD + Y+S V G G+ +EG ++ F + + G D+ +
Sbjct: 299 YVDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDLKVVLRK 351
>gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Thiomonas sp. 3As]
Length = 387
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 116/372 (31%), Positives = 178/372 (47%), Gaps = 22/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA++
Sbjct: 7 SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G E RGATAYVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ
Sbjct: 67 QAWERGHEVRGATAYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126
Query: 119 LSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI VD E + +++R V + LK+A S D + + S IT
Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSE 186
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS------ 231
++ H RA++ A+L G+GTV ADDP+L R P+RI++D +
Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVVDSRLECPATVRLL 245
Query: 232 --------LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + + + L L ++ DL+ L+ +L
Sbjct: 246 QSADSPLWIVHALPPEQAAPRLAALRSAATASLDLQDIALPVDPDKPGKTDLRALMQVLG 305
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMC 340
RG+ L E G + S + + +VD +++Y + ++GEG P ++
Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDELLMYLAPQLLGEGAGLAALGPYQQVNEGLALRW 365
Query: 341 VRRDYFGSDVCL 352
G+D+ +
Sbjct: 366 HDVQRIGADLRI 377
>gi|325568121|ref|ZP_08144562.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
ATCC 12755]
gi|325158322|gb|EGC70473.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
ATCC 12755]
Length = 358
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 106/363 (29%), Positives = 158/363 (43%), Gaps = 10/363 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
+M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+
Sbjct: 1 MHNEYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHS 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC Q II+ GI++VV+ DP+ V+G+G ++L +G
Sbjct: 61 SEDLINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKRFLENQG 120
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + Y + ++ LK A++ D I ITG
Sbjct: 121 IDVLVGIEETEVRRLNPHYNFYHQHQLPYVALKQAITLDGRIAHDAQTRSAITGSAVWQN 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R ILVG TVL DDP L + + + +
Sbjct: 181 VHQERGDYQGILVGSQTVLTDDPTLLTTIETSFPPIRIVVDRRGRTLSQPQLALFADDSA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + L ++++I + + LL L R V SL VEGGAA+ +F
Sbjct: 241 PVWIFTQQAAVSDLPA-----HVSVIQLEELTIAALLKELATRQVQSLYVEGGAAIHDAF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLC 360
+ S L I Y + +G + S E + + V G DVC+ C
Sbjct: 296 LASGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEEC 355
Query: 361 LQE 363
Q+
Sbjct: 356 SQD 358
>gi|223043509|ref|ZP_03613554.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
gi|222442997|gb|EEE49097.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14]
Length = 349
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 167/354 (47%), Gaps = 12/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE+A+
Sbjct: 3 RFMNYAIQLAKMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGEDAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+
Sbjct: 63 DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAVKDTT--LASKGDEILKEAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + +T+K++ S D S IT K V+ LR
Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G T+ ADDP T R+ P+R+IL ++ + ++ I
Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQD--GKHPIRVILSKSGQIDFEQQLFADTASPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ K+I II + D +L L RG+ LLVE G V F+ S +
Sbjct: 239 ENENLK---NQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D +ILY + +IG G + + F V ++ L+ K
Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNIKLKLRKK 349
>gi|253732422|ref|ZP_04866587.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253723812|gb|EES92541.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 357
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 111/354 (31%), Positives = 164/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A
Sbjct: 13 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+
Sbjct: 73 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNS--LDTHGDETLRAQGIEVEC 130
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 131 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 248
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + NI IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 249 ENPN-----LTTNQTNIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357
>gi|302751598|gb|ADL65775.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
[Staphylococcus aureus subsp. aureus str. JKD6008]
Length = 343
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 110/352 (31%), Positives = 161/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ +
Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|239831592|ref|ZP_04679921.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
3301]
gi|239823859|gb|EEQ95427.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG
3301]
Length = 375
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 164/362 (45%), Positives = 223/362 (61%), Gaps = 7/362 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
V+S D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E
Sbjct: 13 VTSDDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAE 72
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSG+G L +
Sbjct: 73 AGDAARGATAYVTLEPCAHHGRTPPCAETLVRAGVARVVAAATDPDERVSGKGFAILREA 132
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L YL R +KR + LK+A+S D MIG G G V ITG I++
Sbjct: 133 GIEVVPGILADQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQVAITGPIARA 192
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
Q H+LRAQ+D IL+GI T LADDP L CRL GL + SP+R++LD +L L S++++T
Sbjct: 193 QSHILRAQTDVILIGIETALADDPVLNCRLRGLGQRSPVRVVLDGGLRLPLSSRLVQTTD 252
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-----KLLTILVGRGVTSLLVEGGA 296
P+ I + I D +L+ L +G++S+LVEGGA
Sbjct: 253 AQPLWIACGEEASPERRYELTAAGCRILATEADDCRIALPELMDDLAAQGISSVLVEGGA 312
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
VA SF++ LVD + ++RS + IG G+ E ++ F +R+ +G D EY+
Sbjct: 313 GVAKSFLDEGLVDRLAIFRSPVEIGSEHGVAVDGLETHIADEFKILRQARYGDDAYAEYV 372
Query: 356 GK 357
K
Sbjct: 373 RK 374
>gi|256545035|ref|ZP_05472403.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
51170]
gi|256399331|gb|EEU12940.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC
51170]
Length = 359
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 98/352 (27%), Positives = 147/352 (41%), Gaps = 8/352 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M ++ G T TNP V ++VKD +I G G HAEV +
Sbjct: 3 DKEYMRKCFELAKKARGKTLTNPLVGAVLVKDNKIISTGFHHEYGKTHAEVDCFNNLKSD 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GA YV LEPCSH+G+ PC II+ I++V++ D + +V G +V
Sbjct: 63 CDGAILYVNLEPCSHWGKQGPCTLEIIKRNIKKVIISNIDTNPKVDGL-KVLKDNNIEVV 121
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++E EGK + R I LK A + D I S I+ S+ VH L
Sbjct: 122 TGLLEDEGKKLNEKFFFNVKYNRPLIALKFAQTLDGKISSNINDSKWISNESSRAYVHEL 181
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R+ DAI+VG T++ D+P L R+ P+RII+D + ++ D K L
Sbjct: 182 RSDYDAIIVGKNTLIKDNPSLNSRIEN--GVDPVRIIVDTNLEIEKDYMSYKIFNLKSDK 239
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + DL L L + S+LVEGG+++ + F+
Sbjct: 240 KTYIATCKDTNNPNLNIIKCKMKNNHVDLNDLANKLYKMKIGSILVEGGSSLNYGFLQEG 299
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353
LVD I + S +I S ++K F F D+ +E
Sbjct: 300 LVDKIYEFISPKIISGFDSKSSFYGRGVDKIKDAYEFEIEDVKRFDDDIMIE 351
>gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3]
Length = 350
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 120/345 (34%), Positives = 179/345 (51%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSG G++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+R+ILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVADREAPTWIFTTSNYAAEKRKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGEVNASFIENKLMDKLILYFAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS +E + K F + G D +
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 344
>gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae TCDC-NG08107]
Length = 361
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 182/358 (50%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQAGEMAKG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E D+ L +I I+ DL L+ +L G ++VE G+ + +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L D I+LYRS ++G G +P + V + G D+ +
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357
>gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W]
gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185]
gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 350
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 122/344 (35%), Positives = 179/344 (52%), Gaps = 11/344 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+R+ILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
+IG PS +E + K F + G D
Sbjct: 300 KIIGGRLAPSFVEGTGITKMKDAIEFKDISFTQIGKDYRFIGYP 343
>gi|317052209|ref|YP_004113325.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
S5]
gi|316947293|gb|ADU66769.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum
S5]
Length = 377
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 114/367 (31%), Positives = 173/367 (47%), Gaps = 15/367 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
M S+ M AL +R +G TS NP V +IV G ++G G A G HAEV A
Sbjct: 1 MTRSAQYEVSMQMALNLARKGLGFTSPNPVVGSVIVDAAGAIVGMGYHAKAGMAHAEVVA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L++AGE+ARGAT YVTLEPC GR+PPC II GI++VV DP+ V+GR L
Sbjct: 61 LKDAGEKARGATLYVTLEPCCVQGRTPPCTDAIIRAGIQKVVYAAQDPNPAVAGRSRAIL 120
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V+ + E E + + + +ITLK A++ D +A S ITG
Sbjct: 121 EAAGIAVESGILEPEARYLNRHFNKHITRQMPYITLKSAITLDGKTAVANGQSRWITGEE 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237
++ H LR DAI VGIGT++ADDP LTCR G P +I D + ++ ++
Sbjct: 181 ARQDGHFLRGIHDAIAVGIGTIIADDPLLTCRHGGKTALPHPDVVIFDTFLRTPRNAAVL 240
Query: 238 KTALLAP--------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + ++ ++ +L + + + + G+TS
Sbjct: 241 RPSEAERRVIIVTSSTMMESDTATRLLGAGIQLIGLPPASQGLPLQQAFAALYEQYGITS 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
+LVEGGA + + I L D ++Y + + G+ G+ + +
Sbjct: 301 VLVEGGAGLTSAIIKETLEDEHVIYMAPKLFGDEGMTWSGSLKVPTPDKAYQLRLHSVER 360
Query: 346 FGSDVCL 352
G+D+ +
Sbjct: 361 LGNDIRI 367
>gi|229542331|ref|ZP_04431391.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
gi|229326751|gb|EEN92426.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1]
Length = 370
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 171/353 (48%), Gaps = 8/353 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL + G TS NP V ++VK+G + G G HAE A+E+AG A
Sbjct: 4 EDYMQLALHLAESVAGQTSPNPPVGSVVVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLA 63
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GA +VTLEPC+HYG++PPCA F+IE GI+ V + DP+ V+G+G++ L Q G+ V+
Sbjct: 64 EGAEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKVE 123
Query: 128 RMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E L+ ++ K +T+K A++ D I S IT ++ L
Sbjct: 124 TGILKEQAEKLYRPFFHFIQTKTPFVTVKTAMTADGKIASETRDSKWITSEEARRDARRL 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R++ DAILVGI TVL D+P L +P+RI+LD H ++ ++K++ +
Sbjct: 184 RSRHDAILVGIQTVLHDNP-LLTTRLPHSRKNPIRIVLDTHLRIPPEAKVLSGDAPTIIF 242
Query: 247 I-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ L + + ++ +L L +G+ +LLVEGGAAV SF+
Sbjct: 243 CGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGEKGIMTLLVEGGAAVNGSFLKE 302
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
V I Y + VIG PSP + + G D+ +
Sbjct: 303 GAVQQYIFYIAPKVIGGKNAPSPFGGHGFGKVADALPLRFEKVEQIGPDLKIT 355
>gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
3776]
gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM
3776]
Length = 401
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 123/388 (31%), Positives = 176/388 (45%), Gaps = 32/388 (8%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQA 59
M + DA M AL +R VG NP+V ++V + ++G G G PHAEV A
Sbjct: 1 MRFPNPDAV-MEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHA 59
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AGE+ARGAT Y TLEPCSH+G++PPCA +I GIR V V DP VSG+G++ L
Sbjct: 60 LAKAGEKARGATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKL 119
Query: 120 SQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
Q GI V+ + + L ++ Q R + K A++ D I S I+
Sbjct: 120 RQAGITVNVGRCADKARELLAPFVAFQCANRPWVHAKWAMTLDGKISTKTGHSHWISSEA 179
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELT---CRLNGLQEHSPMRIILDPHFKLSLDSK 235
S+ VH LR + DAI+VGIGTVL DDP+L +P RI+LD +S S+
Sbjct: 180 SRRTVHELRGRVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPARIVLDSRLSISPHSQ 239
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC---------------------DCRD 274
+++TA P I+ T + +
Sbjct: 240 LVQTARKIPTIVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSLPCGSTDIGLAHHPC 299
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
L LL + G+ LLVEGGA + SF++ L+D + Y + ++G SP+
Sbjct: 300 LIHLLDKMRAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLVGGSAAASPIAGKGR 359
Query: 334 ----LEKNFMCVRRDYFGSDVCLEYIGK 357
+ F D I +
Sbjct: 360 MTIFDGEEFASGEFTTIDKDAYFHGIRR 387
>gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL2A]
gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL2A]
Length = 364
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 108/366 (29%), Positives = 175/366 (47%), Gaps = 14/366 (3%)
Query: 1 MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55
M + D + +M +++ + G TS NP V +++ +G ++G G + G PHA
Sbjct: 1 MINLAEDQKIWVPWMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
E++AL +AG++A T VTLEPC H G +PPC + II G+++VVV + DPD RVSG G
Sbjct: 61 EIEALAQAGKKALDGTIVVTLEPCCHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L G+ V + E + + R R LK A+S D IG+ S I
Sbjct: 121 ISRLKDSGLEVIEGVLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T +++ VH +R++ DA++VG GTV AD+P LT R E P+R++ L +
Sbjct: 181 TDIPARHSVHRIRSKCDAVIVGGGTVRADNPLLTSREKLDFE--PLRVVFSKTLNLPQSA 238
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K+ T + +I + + + + + +LL+ L +G +L E
Sbjct: 239 KLWDTKIARTII-AYGPEGDESFFSDLPNGPEKLRLNSNNPSELLSSLAKKGCNKILWEC 297
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
G +A S I + V ++++ + ++G SPL E D G D
Sbjct: 298 GPQLATSAIEANCVQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGED 357
Query: 350 VCLEYI 355
+C I
Sbjct: 358 ICWRLI 363
>gi|115524816|ref|YP_781727.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
BisA53]
gi|115518763|gb|ABJ06747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rhodopseudomonas palustris BisA53]
Length = 383
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 153/362 (42%), Positives = 200/362 (55%), Gaps = 12/362 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M AL R +G T NP+V +IVKDG+++GRG T G PHAEV+AL AGE
Sbjct: 21 DLRYMQLALALGRRGLGNTWPNPAVGAVIVKDGVIVGRGWTQPRGRPHAEVEALARAGEA 80
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+G++PPC +IE G+ RVV ++DP+ V+G+G L GI V
Sbjct: 81 ARGATLYVTLEPCSHHGKTPPCCDAVIEAGLARVVAAIEDPNPEVAGQGHAKLRAAGIKV 140
Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + HA R++ R H+ LK+A+S D+ I AG V ITG + QV L
Sbjct: 141 DVGCGAVDAARDHAGHFRKIRDGRPHVILKLALSSDDKIAAAGRKRVAITGAAANAQVQL 200
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ DAILVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A P+
Sbjct: 201 LRAQCDAILVGIGTVLADDPELTCRLPGMAARSPVRVVLDRALRIPGASKLVLSARQTPL 260
Query: 246 IIVTENDDPVLALAFRKKNINI-------IYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ A A DL +L +L RGVT L+VEGGA V
Sbjct: 261 WLIAAETAEAAAAARLGAAGAQVLRLPVEPTARGLDLNAVLKLLAERGVTRLMVEGGAQV 320
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +F+ VD I L+R IG+ GIP+ PL F D +
Sbjct: 321 ASTFVAQNFVDEIWLFRGSQPIGDDGIPALQTLPLTAITASPAFRVRDSQTLSPDTLTIF 380
Query: 355 IG 356
Sbjct: 381 ER 382
>gi|149197492|ref|ZP_01874543.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
HTCC2155]
gi|149139510|gb|EDM27912.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa
HTCC2155]
Length = 342
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 94/359 (26%), Positives = 151/359 (42%), Gaps = 34/359 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++M A+ + G TS NP V +IVKDG VI G G HAE A+ A E
Sbjct: 1 MHEKWMQRAIDNALKAWGHTSPNPHVGAVIVKDGEVIADGWHKKAGTHHAEKDAITNAKE 60
Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ G+T YVTLEPC YGR+ PC ++I++ GI +VV D + +GRG +L
Sbjct: 61 AGREDDLYGSTIYVTLEPCCTYGRTEPCTEWIMDAGIAKVVYGCTDSNPEHAGRGFNYLL 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
Q G+ ++ + E E + E++ ++ LK+A + D I S ITG +
Sbjct: 121 QAGVEIEGPILEEECLAINRFFFKWIDEQKPYVILKMAQTLDGKIATESGQSQWITGAEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+++V LR DAI+VG T+ D+P L R H I + + +
Sbjct: 181 RHEVQKLRQGCDAIMVGSETLRQDNPSLNVREIENPRHPKRYIWSRSDLDQNFKAFTQEG 240
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + L+ L G +TSLL+EGG +A
Sbjct: 241 GAT-----------------------YCRAQSKNEWQYFLSQLGGEEITSLLLEGGGFLA 277
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----EGYLEKNFMCVRRDYFGSDVCLE 353
+ + +++VD I + + ++G S + ++ G D +
Sbjct: 278 SAALKAQIVDEIQFFIAPKILGGEDSRSSVSGLNPLGLDEAIELENMQITPCGKDFLVT 336
>gi|326571732|gb|EGE21745.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC8]
gi|326571813|gb|EGE21819.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC7]
gi|326574353|gb|EGE24296.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis CO72]
Length = 350
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 110/357 (30%), Positives = 171/357 (47%), Gaps = 25/357 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D MA S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQS AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDSDNYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIYR 347
>gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279]
Length = 384
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 103/374 (27%), Positives = 168/374 (44%), Gaps = 23/374 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R++ AL+ + G T NP V ++VK+G ++G G G PHAEV AL +AG
Sbjct: 9 ALDERYLRRALQLAERGRGHTHPNPLVGAVLVKNGRIVGEGYHPRAGEPHAEVFALHQAG 68
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
EEA+GAT YV+LEPC H+GR+PPC+ ++E G+ RVVV DP+ + G GL+ L G+
Sbjct: 69 EEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPKAQG-GLERLRSAGV 127
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ ++E+E + + +R + K A+S D + + ++ +S+
Sbjct: 128 AVELGLLEAEARAQNEVFFHALRRRRPFVLWKAALSLDGQVATRSGHAAWVSNALSRRVA 187
Query: 184 HLLRAQSDAILVGIGTVLADDPE----------LTCRLNGLQEHSPMRIILDPHFKLSLD 233
R A++VG+GTVLADDP+ L P++++LD +
Sbjct: 188 QGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHLLEPPPLRDPLKVVLDTEARTPPG 247
Query: 234 SKIIKTALLAPVIIV--------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+++ V VL L+ L L +
Sbjct: 248 ARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGATVVELPREGGRVSLEAALAWLWEQ 307
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVR 342
GV +L+EGG +A + + VD + L+ + ++GEG + R
Sbjct: 308 GVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVGEGRGALLGFAAGRMDEALGLETRR 367
Query: 343 RDYFGSDVCLEYIG 356
+ D+ LE
Sbjct: 368 LELLEGDIWLEAYP 381
>gi|75675917|ref|YP_318338.1| riboflavin biosynthesis protein RibD [Nitrobacter winogradskyi
Nb-255]
gi|74420787|gb|ABA04986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter
winogradskyi Nb-255]
Length = 387
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 150/364 (41%), Positives = 198/364 (54%), Gaps = 12/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM AL R +G ++ NP+V +IVKDG+++GRG T GG PHAE +AL AG
Sbjct: 19 TVDLHFMQLALALGRRSLGASAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEAEALRRAG 78
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP VSG+G L G+
Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVSGQGHARLRAAGV 138
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ +E + R ++R HI LK+AVS D I AG V ITG ++ +
Sbjct: 139 AVEIGLCAAEAAHHHAGHFRRVRDRRPHIILKLAVSSDGKIAAAGGVPVAITGEAARARA 198
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HLLRAQ AILVGIGTVLADDP LTCRL G++ SP+R++LD ++ S+++++A
Sbjct: 199 HLLRAQCSAILVGIGTVLADDPLLTCRLPGMETRSPLRVVLDQALRIPESSRLVQSARET 258
Query: 244 PVIIVTENDDPVLAL-------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ I+T A + DL +L L GVT L+VEGGA
Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGARVMRVPGAAGAPGLDLVAVLRALSESGVTRLVVEGGA 318
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
VA SFI + LVD L R IG+ G+ + PL F + D
Sbjct: 319 RVAASFIAAALVDEAWLLRGPDPIGDDGVAALGALPLTVITGSPEFRMCAGETLDQDALA 378
Query: 353 EYIG 356
Y
Sbjct: 379 IYER 382
>gi|296114110|ref|YP_003628048.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
gi|295921804|gb|ADG62155.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4]
Length = 350
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 171/357 (47%), Gaps = 25/357 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D A S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA+S AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N L + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDLDDYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIYR 347
>gi|163793213|ref|ZP_02187189.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
gi|159181859|gb|EDP66371.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199]
Length = 369
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 145/368 (39%), Positives = 203/368 (55%), Gaps = 11/368 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D R+M+ ALR + VG T+ NP V C++V+DG ++GRG T GG PHAE AL
Sbjct: 1 MADEADDDRWMALALRLAHSAVGDTAENPPVGCVLVRDGRIVGRGRTGSGGRPHAEAVAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG ARGATA+VTLEPC+H+GR+PPCA ++ G+ RVV + DPD RV G G L
Sbjct: 61 AQAGNAARGATAFVTLEPCAHHGRTPPCADALVAAGVVRVVAAIGDPDPRVDGGGFATLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V + ++ +R + R +TLKIA S D I A S ITG +
Sbjct: 121 RAGVSVSVGVAAQQAATATTGFLSRVQDARPFVTLKIATSLDGRIATASGASRWITGTAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H++RA+ DAILVGIGT LADDP LTCR GL+E SP+R++LD +L +DS + +T
Sbjct: 181 RRHAHVVRARQDAILVGIGTALADDPALTCRTPGLEERSPVRVVLDSGLRLPVDSDLART 240
Query: 240 ALLAPVIIVTE------NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
A P ++T + + L + D+ +L L GRG+ +LVE
Sbjct: 241 ARWVPTWVITSVGAGSGHARALTDLGVEVFGVARDAGGRPDVPAVLATLAGRGIGRVLVE 300
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349
GGA VA SF+ + VD I YR+ I+IG G P+ + F +D
Sbjct: 301 GGATVARSFVAADAVDEIQWYRAPILIGGDGRPAVDALDVATPDGAPRFDRTDCISLDAD 360
Query: 350 VCLEYIGK 357
+ Y +
Sbjct: 361 MLETYRRR 368
>gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
Length = 396
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 124/356 (34%), Positives = 179/356 (50%), Gaps = 7/356 (1%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D + M+ ALR + T NP V C+I V+G+G G PHAEV AL
Sbjct: 39 PFSVLDHQHMANALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 98
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L +
Sbjct: 99 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRE 158
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V M ++ + +L+R R + +K+A S D MA S ITG ++
Sbjct: 159 AGIDVSEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAR 218
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V RA++ AIL G TVLADDP LT RL + P+R++LD + S++ +
Sbjct: 219 EDVQHWRARAGAILTGADTVLADDPMLTVRLADAEVMPPLRVVLDSRLRSLECSRVREG- 277
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
P + + A + DL +L +L RG+ + E GA +A
Sbjct: 278 -GTPTLYLHNAIVSPPDAADAAFASVALRHGHLDLGAVLALLADRGINEVHTEAGATLAG 336
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ + VD ++LY + ++G+ G P ++ ++ V + G D+ L
Sbjct: 337 ALLRGGWVDELLLYLAPTLLGDSGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDLRL 392
>gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 371
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 120/366 (32%), Positives = 169/366 (46%), Gaps = 14/366 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+
Sbjct: 1 MTNIKDLESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAI 60
Query: 61 EEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
++A E+ +G+T +VTLEPC HYGR+PPC IIE GI VV+ D + V G+G+
Sbjct: 61 KDAKEKGHDLKGSTMFVTLEPCCHYGRTPPCTSAIIEEGISEVVIGALDQNPIVKGQGVN 120
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + E E + + T EKR + LK+A S D I S IT
Sbjct: 121 ILKSHGIKVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKIGDSKWITS 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ H LR ++ AILVG T L D+P LT R E P R+++D K+ I
Sbjct: 181 EKSRQFAHQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPARVLIDKKLKVPPTYNI 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLL 291
VI + L K+N+ I++ + + +L L R + LL
Sbjct: 240 YNNEAKTIVITSKLANQENLKRLSEKENVEIVFLDLDENEKFKIDDILNTLYEREIVHLL 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFG 347
VEGG V I R D I ++ + ++IG GI +E+
Sbjct: 300 VEGGRGVITDLIKERKFDKISIFTAPLLIGNDGISWLGCIGIEKIQDSLKLRVEDFKVLD 359
Query: 348 SDVCLE 353
D E
Sbjct: 360 KDFYFE 365
>gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
Length = 379
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 116/375 (30%), Positives = 177/375 (47%), Gaps = 21/375 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D MS A++ +R + T NP V C++ KDG ++G G G PHAEV AL
Sbjct: 1 MNWSVEDIEMMSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHAL 60
Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A + A+GATAYVTLEPCSHYGR+PPCA+ +I + RVVV V+DP+ +V GRG+
Sbjct: 61 AMANSDSNLGAKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI VD + + ++ +++E +T+K+A S D +A S IT
Sbjct: 121 AMLRDAGIQVDVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELT----------CRLNGLQEHSPMRIILD 225
G ++ V LRA+ A++ G+ T+LAD+P L R + H P+R++LD
Sbjct: 181 GPEARRDVQRLRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLD 240
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT--ILV 283
+++ D + ++ + + CD L +
Sbjct: 241 SRARVTSDLALFAIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFKYL 300
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFM 339
G+ S+L+E GA +A S I D ++LY++ ++G G Y
Sbjct: 301 GKQCNSVLIEAGATLAGSVIAKGHGDELVLYQALKMLGSSGRNLITLPEYTAMSQIPAIK 360
Query: 340 CVRRDYFGSDVCLEY 354
V G+D L
Sbjct: 361 LVDERKVGADTRLTL 375
>gi|240127481|ref|ZP_04740142.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-93-1035]
Length = 361
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 181/358 (50%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E D+ L +I I+ DL L+ +L G ++VE G + +F+
Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L D I+LYRS ++G G +P + V + G D+ +
Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357
>gi|58584287|ref|YP_197860.1| pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
TRS of Brugia malayi]
gi|58418603|gb|AAW70618.1| Pyrimidine deaminase and reductase [Wolbachia endosymbiont strain
TRS of Brugia malayi]
Length = 378
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 129/373 (34%), Positives = 175/373 (46%), Gaps = 24/373 (6%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FMS AL + +G + NP+V C+IVKDG+V+G G T GG PHAEV AL+ A
Sbjct: 2 IDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKG 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT YVTLEPC HYG + PC II GI++VVV DPD RVSG G++ L + GI
Sbjct: 62 STHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGIT 121
Query: 126 VDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V++ + E L+ + R I KIA + D I S IT ++N VH
Sbjct: 122 VEQGIMQEEAEKLNIGFFTTRKLHRPFIACKIATTLDGKIATFKGDSKWITSGSTRNWVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRA+ DAI++G T++ DDP LTCRL GL+ SP+R+I+D KL ++KTA
Sbjct: 182 ELRAKYDAIMIGSNTLINDDPLLTCRLPGLESRSPIRLIIDSQEKLKEKHNVVKTADKVT 241
Query: 245 VI-------------------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+ P L ++
Sbjct: 242 TWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSEI 301
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCV 341
G+T LLVEGG + + L+D +I+ RS ++G IP N F
Sbjct: 302 GITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIPFIGNLEIQSINNCYQFKKA 361
Query: 342 RRDYFGSDVCLEY 354
F D+ +
Sbjct: 362 EIIDFDEDIVEVW 374
>gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
Length = 373
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 170/362 (46%), Gaps = 13/362 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVRGID-TPRQPQRILVDSRLDLPLDARLLE 240
Query: 239 T----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ E VL + DL +L L RGV L VE
Sbjct: 241 GAPLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEA 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDV 350
G + S + VD +++Y + ++G + G D+
Sbjct: 301 GHKLNGSLLREHCVDELLVYLAPSLLGADAAGMFDLAAPASLEARTRLSFHGIERVGDDL 360
Query: 351 CL 352
+
Sbjct: 361 RI 362
>gi|240114937|ref|ZP_04728999.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae PID18]
Length = 361
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 186/358 (51%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L DS+++ +I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPDSRLLTDGQSPTLIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E ++ L + ++ I+ DL +L+ +L G G ++VE GA + +F+
Sbjct: 240 LERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIG-EGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L D I+LYRS ++G G +P + V + G D+ +
Sbjct: 300 AENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357
>gi|303231427|ref|ZP_07318158.1| riboflavin biosynthesis protein RibD [Veillonella atypica
ACS-049-V-Sch6]
gi|302513864|gb|EFL55875.1| riboflavin biosynthesis protein RibD [Veillonella atypica
ACS-049-V-Sch6]
Length = 406
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 41/391 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG
Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGYN 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI V
Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + I + T + +T+K A+S D I S IT S+ H+
Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHV 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCR------------------LNGLQEHSPMRIILDPH 227
LRA DA+LVGIGT+LADDP L CR N L+ H P IILD
Sbjct: 184 LRATHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDD-----------------PVLALAFRKKNINIIYC 270
+ D+K+ +I V + P ++ + I
Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVKELPTKSVRQGRTTDVAIDI 303
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG S +
Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTSAVG 363
Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+++ +E
Sbjct: 364 GTGFATLHEAPTLEFDSSRILDNNIRIESYR 394
>gi|33593884|ref|NP_881528.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
I]
gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
I]
gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS]
Length = 386
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 113/368 (30%), Positives = 177/368 (48%), Gaps = 13/368 (3%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S+ D ++ AL +R + T+ NP V C+IV+DG V+G G T G PHAEV
Sbjct: 1 MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60
Query: 59 ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
AL EA G GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RV+G+G
Sbjct: 61 ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQG 120
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPI 174
L L GI V + + + L+A ++ + + LK+A S D + S I
Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
TG ++ H RA+S +L G+GTVL DDP+L R H P + ++D F++ D+
Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLL 291
++ + + +A R + + D L + L + + +
Sbjct: 240 RLFDDGAQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVH 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGS 348
VE GA ++ + + VD +++Y + +++G+ LE + F G+
Sbjct: 300 VEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGT 359
Query: 349 DVCLEYIG 356
DV L
Sbjct: 360 DVRLRARV 367
>gi|314933920|ref|ZP_07841285.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
gi|313654070|gb|EFS17827.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87]
Length = 349
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 166/354 (46%), Gaps = 12/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE A+
Sbjct: 3 RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGENAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+
Sbjct: 63 DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAVKDTT--LASKGDEILKEAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + +T+K++ S D S IT K V+ LR
Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G T+ ADDP T R+ P+R+IL ++ + ++ I
Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQD--GKHPIRVILSKSGQIDFEQQLFADTASPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ K+I II + D +L L RG+ LLVE G V F+ S +
Sbjct: 239 ENENLK---NQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D +ILY + +IG G + + F V ++ L+ K
Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNLKLKLRKK 349
>gi|323439574|gb|EGA97294.1| riboflavin specific deaminase [Staphylococcus aureus O11]
gi|323442021|gb|EGA99657.1| riboflavin specific deaminase [Staphylococcus aureus O46]
Length = 343
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 109/352 (30%), Positives = 161/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ +
Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRDHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera
pallida ATCC 43644]
gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera
pallida ATCC 43644]
Length = 387
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 129/361 (35%), Positives = 183/361 (50%), Gaps = 21/361 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M AL + G NP V LIV+ G V+GRG G PHAEV+AL + AR
Sbjct: 1 MRLALALAERGRGHVEPNPMVGALIVRGGEVVGRGWHRRFGGPHAEVEALRSLSDPALAR 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT +VTLEPC H G++PPC Q I+E GI RVV + DP +V+G GL L G+ V
Sbjct: 61 GATLFVTLEPCCHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEVCH 120
Query: 129 M-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
E+ + AYL + + R ++T K A++ D A S I+ S+ +VH LR
Sbjct: 121 GLEETAARRLNAAYLKQVLIGRPYVTAKWAMTLDGKTAAATGDSRWISNERSRARVHELR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DAI+VGIGT LADDP LT R +P RI+LD +L L S++++T AP+ +
Sbjct: 181 GRMDAIVVGIGTALADDPLLTVR--PPGPRTPTRIVLDSQARLPLSSRLVRTIDQAPLWL 238
Query: 248 VTENDDP-----------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
V D P V A + +++ + LL L G+T LLVEGG
Sbjct: 239 VHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGVPIVPLLDELGREGMTHLLVEGGG 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351
VA +F ++ +D++ ++ + VIG +PL F+ R + D+
Sbjct: 299 RVAGAFFDAGAIDALEVFIAPRVIGGTARFAPLLGQGRPLMAQAARFIESRLEILDGDLR 358
Query: 352 L 352
L
Sbjct: 359 L 359
>gi|257877850|ref|ZP_05657503.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
EC20]
gi|257812016|gb|EEV40836.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
EC20]
Length = 358
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 107/363 (29%), Positives = 159/363 (43%), Gaps = 10/363 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
+M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+
Sbjct: 1 MHNEYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHF 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC Q II+ GI++VV+ DP+ V+G+G Q+L ++G
Sbjct: 61 SEDLINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKQFLEEQG 120
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+ + Y +R ++ LK A++ D I ITG
Sbjct: 121 IDVLVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQN 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R ILVG TVL DDP L + + + +
Sbjct: 181 VHQERGDYQGILVGSQTVLTDDPTLLTTVETSFPPIRIVLDRRGRTLSQPHLALFADDSA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + L ++++I + + LL L R V SL VEGGAA+ +F
Sbjct: 241 PVWIFTQQTTVSDLPA-----HVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLC 360
+ S L I Y + +G + S E + + V G DVC+ C
Sbjct: 296 LASGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEEC 355
Query: 361 LQE 363
Q+
Sbjct: 356 SQD 358
>gi|332976011|gb|EGK12882.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. 1501(2011)]
Length = 374
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 171/353 (48%), Gaps = 22/353 (6%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A+ ++ + T NP+V C++VKDG++IG G G PHAEV AL A +
Sbjct: 36 DYYYMNLAIEAAKKGLYTTRPNPAVGCVLVKDGLIIGTGFHPKAGQPHAEVFALRNATQS 95
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ATAYVTLEPCSH G++PPCA+ +I+ + RVV+ DP+ +V+GRG++ L GI V
Sbjct: 96 VAAATAYVTLEPCSHTGKTPPCAEALIKAQVSRVVIAGLDPNPKVAGRGVRLLLDAGIKV 155
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ +E L+ +L + ++ LKIA S D MA S ITG ++ V
Sbjct: 156 SVGVCTEQAEQLNLGFLKSMRTQMPYVRLKIASSLDGRTAMASGESKWITGSAAREDVQQ 215
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA S AI+ G T++ D+P L R L V
Sbjct: 216 LRALSGAIITGSQTIIKDNPSLNVRSTQLGVDIEQI------------------PQPKVV 257
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
++ + +++ D L +++V + +L+E G+ V+ SFI +
Sbjct: 258 VLDRRQRLKGSDYKVLQNEQTLLWADNDLKTLLHSLVVEHDIHDVLIEAGSKVSGSFIEA 317
Query: 306 RLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
LVD +I+Y++ V+G P + ++ F G+D+ L ++
Sbjct: 318 GLVDELIVYQAPCVLGHEAQPMLTMTVNRLSSQRRFKLAHCSQIGTDIKLNFV 370
>gi|326562323|gb|EGE12649.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
103P14B1]
gi|326575527|gb|EGE25452.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
101P30B1]
Length = 350
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 111/356 (31%), Positives = 169/356 (47%), Gaps = 25/356 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 E---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L
Sbjct: 69 RGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D A S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRA+S AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N L + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDLDDYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGT 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEY 354
FI LVD +I+Y++ ++G+ P L+ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDHLAKQYRFGLHSADIIGNDIRLIY 346
>gi|257868250|ref|ZP_05647903.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
gi|257874477|ref|ZP_05654130.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
EC10]
gi|257802364|gb|EEV31236.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30]
gi|257808641|gb|EEV37463.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus
EC10]
Length = 358
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 107/363 (29%), Positives = 159/363 (43%), Gaps = 10/363 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
+M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+
Sbjct: 1 MHNEYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHS 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC Q II+ GI++VVV DP+ V+G+G ++L ++G
Sbjct: 61 SEDLINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVVGQLDPNPIVAGQGKRFLEEQG 120
Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+ + Y +R ++ LK A++ D I ITG
Sbjct: 121 IDVLVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQN 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R ILVG TVL DDP L + + + +
Sbjct: 181 VHQERGDYQGILVGSQTVLTDDPTLLTTVETSFPPIRIVLDRRGRTLSQPHLALFVDDSA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I + L ++++I + + LL L R V SL VEGGAA+ +F
Sbjct: 241 PVWIFTQQTTVSDLPA-----HVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLC 360
+ S L I Y + +G + S E + + V G DVC+ C
Sbjct: 296 LASGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEEC 355
Query: 361 LQE 363
Q+
Sbjct: 356 SQD 358
>gi|298695036|gb|ADI98258.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
ED133]
Length = 343
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 109/352 (30%), Positives = 160/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ +
Sbjct: 61 TIYITLEPCSHFGLTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDDTLRDHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42]
Length = 350
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 122/345 (35%), Positives = 179/345 (51%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATFLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+R+ILD ++ +++ ++ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRVILDSTLRIPMEANVVTDEEAPTWIFTTSNHAAEKRKAL 239
Query: 261 R---KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K I +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY +
Sbjct: 240 ESAGVKVFVISGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS +E + K F + G D +
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDYRFIGYPE 344
>gi|320139809|gb|EFW31673.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus MRSA131]
Length = 343
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 109/352 (30%), Positives = 161/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ +
Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411]
Length = 375
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 15/365 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM A+ ++ T NP V +IVK+G +IG+G G PHAEV+A+
Sbjct: 14 NKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKEGKIIGQGYHKKAGLPHAEVEAINSVK 73
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ + AT YV LEPC+HYGR+PPC+ II GI+RVV+ + D + + SG G++ L
Sbjct: 74 DRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDINKKASG-GIERLKGA 132
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ ++ +K A+ + I + G S IT ++
Sbjct: 133 GIDVKVGVLEDEAKKLNEVFIENTLNRKPFFIMKAAMLLNGCIAVKGGVSQWITSEKARR 192
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LR + A+LVGI T++ DDP LTCR+ G P R++LD + K+ + +KI
Sbjct: 193 FSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGY--RQPKRVVLDMNLKIPISAKIFSEYP 250
Query: 242 LAPVIIVTENDDPVLALAFRKKN----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
II ++N D R + + L L+ + S +VEGG+
Sbjct: 251 NNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEFNPADLSEKLLENEICSCIVEGGSR 310
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----EGYLEKNFMCVRRDYFGSDVCL 352
F+ ++L + L + + G G + + + + G D+
Sbjct: 311 THGYFLKNKLYNKAYLLYAPKITGSYGAFNVAGFDAPKDLNEAIKLIDTKCKKIGDDILF 370
Query: 353 EYIGK 357
E K
Sbjct: 371 EGYFK 375
>gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3]
Length = 368
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 99/361 (27%), Positives = 166/361 (45%), Gaps = 9/361 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ + NP V C+IVK+G +IG G G PHAE +A+
Sbjct: 4 FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E G+ YVTLEPC HYG +PPC +I+ + V + + DPD RVSGRG L +
Sbjct: 64 ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E +Y+ ++ + + +K A + D + S IT ++
Sbjct: 124 GICVYEGLGKEEAERSLKSYIYQRTHGKPWVVIKSAATVDGQVADRDGQSQWITCPEARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDP--ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TVL D+P L P+R+++D + ++K+ +
Sbjct: 184 DVGKLRARSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRVVVDSKGVVPPEAKVFHS 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
A + + ++ + +L +L+ L +LVEGGA
Sbjct: 244 AGKSLYVTTPQSSEDHRKKIEDLGVDLLVTEPQGAKVNLHELMAYLSTTPTLQVLVEGGA 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVCLE 353
A+ +F+ RLV +++LY ++G+ P+ + + + + + + G+ +
Sbjct: 304 ALHTAFLKERLVHALVLYLGPKILGDQRNPTFGDLGLRLHSSQKIVPIFSEIIGNSLKTS 363
Query: 354 Y 354
+
Sbjct: 364 W 364
>gi|239617610|ref|YP_002940932.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
gi|239506441|gb|ACR79928.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1]
Length = 345
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 168/361 (46%), Gaps = 21/361 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +FM A+ +R GL + NP V +IVK+G ++ G Y G HAE+ A+E A +
Sbjct: 1 MDEKFMELAIEEARKGEGLVNPNPLVGAVIVKNGKILSTGYHEYFGGRHAEIVAIENAKK 60
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GA YVTLEPC HYG++PPC II G V + DP+ V G+G + L
Sbjct: 61 MGYDIKGAEIYVTLEPCVHYGKTPPCTDRIIREGFSAVYIGTLDPNPMVHGKGEEKLKNA 120
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L K + LK+A+S D I IT ++
Sbjct: 121 GICVKHGILEVKAKELIEVFAKYMKTKMPFVALKLAMSLDGFITSMRGKRERITSDRARE 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LR AI++G T ++DDP LTCR + +P+RIILD K + + +
Sbjct: 181 KVHRLRNYYSAIMIGSKTAISDDPLLTCR-YSFCKRNPIRIILDRSGKTAKVNLKLFAQE 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+I + N+ +N+ +I D + +L L G+ S+LVEGGA VA
Sbjct: 240 GRTIIFTSSNE-------RWPENVEVIRKDDLSPEPILKALGKMGIDSVLVEGGANVASQ 292
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
FI D I L+ + I G G P K F R + + D+ E I C
Sbjct: 293 FI--NYADKIHLFYAPIAFGNGLSPF----DRKFKGFTTKRVEVYHPDIYWELIP---CS 343
Query: 362 Q 362
Q
Sbjct: 344 Q 344
>gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
Length = 371
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 110/360 (30%), Positives = 174/360 (48%), Gaps = 14/360 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG
Sbjct: 3 DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIR 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+G+T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ V
Sbjct: 63 AQGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQV 122
Query: 127 DRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E L+ ++ V+ R + K+A+S D +A S IT ++ V
Sbjct: 123 EHGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG-------LQEHSPMRIILDPHFKLSLDSKIIK 238
RA+S AIL GIGTVL DDP L R P+R+ILD +S+ ++++
Sbjct: 183 WRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLLS 242
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ +L R + + DL L+ L R + L VE GA
Sbjct: 243 LPGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVECGA 302
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
+A S + + L+D ++LY + ++GE + ++ G D L
Sbjct: 303 RLAGSLLQAGLMDELVLYIAPKLMGEAALGLLQLPGIQTMKDCIEVDIKEMRAVGRDWRL 362
>gi|312830146|emb|CBX34988.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ECT-R 2]
Length = 347
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 161/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ + A
Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMVQQNAE 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+
Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVEC 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + ++ IT+K++ S D S IT K V+ LR
Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L + +I IIY DL +L L RGV +LLVE G F+ S +
Sbjct: 239 ENPN-----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D ILY + +IG G + E F V + +V L K
Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347
>gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
Length = 367
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 125/367 (34%), Positives = 189/367 (51%), Gaps = 11/367 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R R + LK A S D ++ S ITG ++
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P+L R P RI+LD ++ LD ++
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVRSFP-TLRQPARIVLDSRLQIPLDCHLVTDTE 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGA 296
VI+ +D+ L ++I II + L+ L G +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCL 352
+A +F+ LVD I+LY++ ++G G L E + + + G D+
Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAVLLSDSPWQSQSVEIIGQDIKW 360
Query: 353 EYIGKNL 359
K++
Sbjct: 361 VLRKKSI 367
>gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
EO147]
Length = 369
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 112/354 (31%), Positives = 172/354 (48%), Gaps = 13/354 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++A G +
Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V
Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120
Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + +++R R + +K A S D +A S ITG +++ H
Sbjct: 121 CGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L
Sbjct: 181 RARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLSARLLEGGSLLIFC 239
Query: 247 IVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ A A R + I+ DL +L +L RG+ L VE G + S
Sbjct: 240 GALDPQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLNGSL 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
+ R VD +++Y + ++G + G D+ +
Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFEVAAPASLADRTRLAFHSVERVGDDLRI 353
>gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
Length = 380
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 119/378 (31%), Positives = 180/378 (47%), Gaps = 23/378 (6%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL A
Sbjct: 3 SIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAMA 62
Query: 64 GEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ RVSGRG+
Sbjct: 63 TQRADGLADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGIN 122
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI VD + + ++ ++++ +T+K+A S D ++ S ITG
Sbjct: 123 MLKDAGIKVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWITG 182
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDP 226
S+ V LRA+S A++ GI TVL DDP L R + P+R+ILD
Sbjct: 183 PESRRDVQRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILDS 242
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
+L+ +K+ ++ + + + D +L + G
Sbjct: 243 RARLTSSAKLFAITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFSHLG 302
Query: 287 --VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMC 340
S+L+E GA +A S I+ D +ILY++ ++G G + +
Sbjct: 303 KTCNSVLIEAGATLAGSVISHNHADELILYQAMKLLGANGRNLISLPDYTDMADIPSVEL 362
Query: 341 VRRDYFGSDVCLEYIGKN 358
+ G D L ++
Sbjct: 363 IDERKLGDDTRLTLKIRS 380
>gi|116493546|ref|YP_805281.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pediococcus pentosaceus ATCC 25745]
gi|116103696|gb|ABJ68839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus
pentosaceus ATCC 25745]
Length = 353
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 111/359 (30%), Positives = 175/359 (48%), Gaps = 15/359 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D +M+ A + T TNP V +IVK+ +V+ +G G HAE+ AL+
Sbjct: 4 ISEQD--YMNLAFEMAEKGKYQTWTNPLVGAVIVKNNVVLAKGYHHQFGAAHAEIDALQH 61
Query: 63 AG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++ARGAT YV+LEPCSH+G++PPCA+ + E GI+ VVV DP+ V+GRGLQ L
Sbjct: 62 LDDLKQARGATMYVSLEPCSHFGKTPPCAKKLAEVGIKAVVVGQKDPNPLVAGRGLQILR 121
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI + + ++ G + + +R ++ +K A++ D I ITG +
Sbjct: 122 DAGIEIKVLNQTGGLNVKYNFFY--QHQRPYVNVKYAMTLDGKINQQANQRSIITGKEAY 179
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
LRA+ AILVG T+ D P+LT R + + P R++L
Sbjct: 180 QDSQQLRAEYQAILVGENTLKVDHPQLTVRQIAVYQ-QPWRMVLIRDVDQLKVEDYAFFK 238
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
P++++T + + N + D K+LT+L RG+ S+LVEGG+ +
Sbjct: 239 TADPILLLTSS-----VTRRQWPNNVEVISDRWTPNKILTLLAKRGIQSVLVEGGSQIHA 293
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCVRRDYFGSDVCLEYIG 356
F+ S LVD I +Y + + G G+P+ L + V + G D+
Sbjct: 294 EFLASGLVDEINVYLAPRIYGATGLPAIFNPTQLPYQSNAYQLVEKMELGPDMKFRLRR 352
>gi|326573500|gb|EGE23466.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E]
Length = 350
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 111/356 (31%), Positives = 172/356 (48%), Gaps = 25/356 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D MA S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQS AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N L + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDLDDYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEY 354
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIY 346
>gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001]
Length = 371
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 111/351 (31%), Positives = 170/351 (48%), Gaps = 9/351 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL+ + G TS NP V C+++ +G ++G G + G HAEV AL +AGE ARG
Sbjct: 1 MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
TA VTLEPC H+GR+PPC+ ++ GIRRVVV + DPD +V+G G+ L G+ V
Sbjct: 61 GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEVIEG 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E + A+L R +R LK A+ D + S I+G ++N VH LRA
Sbjct: 121 VAAEEARALNRAFLHRIAHRRPFGILKWAMGVDGRTALPNGASQWISGPEARNWVHALRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++VG GTV ADDP LT R E P+R++L L +++ TA ++
Sbjct: 181 RCDAVVVGGGTVRADDPLLTSRGRRHSE--PLRVVLSRSLALPERARLWDTAQAPTLVAH 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
++ I + + + L+ L RG +L E GA +A + + V
Sbjct: 239 GYEAPARRRFQLDQRGIERLVLEACEPWALMQELARRGCNQVLWECGAELATAALRQSCV 298
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
+ + V+G +P+ + + G D+ +
Sbjct: 299 QEVAAVIAPKVMGGTLARTPVGDLGFTGMQQVPAWQTTCPQQLGDDLLWQL 349
>gi|326560692|gb|EGE11060.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis
46P47B1]
Length = 350
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 111/356 (31%), Positives = 172/356 (48%), Gaps = 25/356 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A
Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68
Query: 66 ---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L
Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ +L ++ LK A S D MA S ITG ++
Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGTEARE 188
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V LRAQS AI+ G GT++AD+P LT R L +
Sbjct: 189 DVQRLRAQSAAIVTGSGTIIADNPALTVRSKQLGVD------------------LHMLPK 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ N L + + + L T++ +L+E G+ ++ +
Sbjct: 231 PKVVIVDRRNRLSDLDDYQVLNRDDTLIWRNDLMSLLKTLVSQYACYDVLIEAGSELSGA 290
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEY 354
FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Y
Sbjct: 291 FITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLIY 346
>gi|159903849|ref|YP_001551193.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9211]
gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9211]
Length = 365
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 112/351 (31%), Positives = 179/351 (50%), Gaps = 10/351 (2%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCPHAEVQALEEAGEEA 67
+M A + ++ G T+ NP V +++ + IG G + G PHAEV+AL +AG+ A
Sbjct: 13 YWMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAA 72
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G T VTLEPC HYG +PPC + IIE G+ RVVV + DPD RVSG G++ L + GI V
Sbjct: 73 KGGTLLVTLEPCCHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVI 132
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + E A++ R R LK+A+S D G++ S IT ++ +VH L
Sbjct: 133 TGILKEEISFQNRAFIFRIKTGRPWGILKLAMSFDGRTGLSNGKSKWITSQEAREKVHAL 192
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+ DA+++G GT+ ADDP LT R E P+R++ L + ++I +T A +
Sbjct: 193 RAKCDAVIIGGGTLRADDPLLTSRGLRNPE--PLRVVFSQSLSLPIGAQIWRTES-AKTL 249
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ N++ + + +N+ + + ++LL L +G +L E G ++A S I
Sbjct: 250 VAFSNENALPLIQELPENVEKLKLHESNPRELLEELAKKGCNRILWECGPSLATSAIKQN 309
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352
V I+++ + ++G + L V G D L
Sbjct: 310 CVQEIVIFMAPKLLGGLPAMTLLGNFGFDSLDQALILKEVSLAKSGKDFVL 360
>gi|257126309|ref|YP_003164423.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
C-1013-b]
gi|257050248|gb|ACV39432.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis
C-1013-b]
Length = 371
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 112/368 (30%), Positives = 183/368 (49%), Gaps = 16/368 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M A+ ++ + NP V ++V+ G VIG G Y G PHAEV AL+EA
Sbjct: 4 NIDEKYMRMAIELAKKGARAVNPNPMVGAVVVQAGKVIGTGYHKYFGGPHAEVYALDEAS 63
Query: 65 EE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L
Sbjct: 64 KNSKDLSNATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGVQILKN 123
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E L+ + + K ++ LK A++ D I S IT ++
Sbjct: 124 AGIGVAENVLKEECDKLNQVFFKYILTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V R + I+VGI TVLAD+P LT R+ +P RII+DPH K IIK
Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIEN--GVNPYRIIIDPHLKTEKIHNIIKEN 241
Query: 241 LLAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ IIVT + K + K++L + G+ S+L+EGG
Sbjct: 242 IDEKTIIVTSEKNKNSEKQLDFSENNKVKFVFLNGTKFSFKEILEKIGTLGIDSILLEGG 301
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV 350
+ ++D+ ++ + ++G+ S + + V+ + +G +V
Sbjct: 302 QLLISQAFEEDVIDAGEIFIANKILGDTEGKSFIAGFDKKNMDESIILKNVKYNIYGENV 361
Query: 351 CLEYIGKN 358
+E++ K+
Sbjct: 362 GMEFLQKS 369
>gi|313894496|ref|ZP_07828060.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
158 str. F0412]
gi|313440892|gb|EFR59320.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon
158 str. F0412]
Length = 404
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 123/391 (31%), Positives = 179/391 (45%), Gaps = 39/391 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+
Sbjct: 3 DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + I
Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREASIE 122
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + SE + + T + +T+K A+S D I S IT S+ H
Sbjct: 123 VVCPVCSEECVELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNESSRRDGH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR----------------LNGLQEHSPMRIILDPHF 228
+LRA DA+L+GIGT+LAD+P+L CR + H P IILD
Sbjct: 183 VLRATHDAMLIGIGTILADNPQLNCRLTDTELSEALLDTSILDEPIHVHQPDVIILDSLG 242
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALA-----------------FRKKNINIIYCD 271
+ S++ + I V+ A K +I
Sbjct: 243 RTPTTSRVFEVENRKVHIFVSTGCPKDRIQALENAGAIVTVVESISTRKSKSTDIVIDIK 302
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG +
Sbjct: 303 KLSIDDILTKLGEIGYTSVLVEGGSAIISSFVETMNFDKVVTYIGNTIIGGTEATPAVGG 362
Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
E + + +++ +E +
Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393
>gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 378
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 18/364 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++ A + +R T+ NP+V C+I++D V+G G G PHAE+ AL AG
Sbjct: 4 DEFYLALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAM 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAY+TLEPC+HYG +PPC + +I GI RVV + DP+ +V+GRGL L Q I V
Sbjct: 64 AYGATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEV 123
Query: 127 DRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + ++ +L R I +K+A S D MA S IT ++ V
Sbjct: 124 RHSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQR 183
Query: 186 LRAQSDAILVGIGTVLADDP-----------ELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
RA+SDAIL TVLAD+P ++ C P+++I+D +++
Sbjct: 184 FRAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFH 243
Query: 235 KIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+IIK+ + + +D P + ++ DL L+ +L R + S+ V
Sbjct: 244 RIIKSNGTTWLARIQPDDKIWPRWVEQIQLPVLSRQDILRIDLMALMILLGKRHINSVWV 303
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
E GA +A S + + LVD +ILY S ++G+ P LE N + G
Sbjct: 304 EAGANLAGSLLLAGLVDELILYMSPKLLGDKARPLCLLPGLERLSDALNCKLLNIRQVGP 363
Query: 349 DVCL 352
D+ +
Sbjct: 364 DIRI 367
>gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC
19707]
gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus
oceani ATCC 19707]
gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
Length = 365
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 107/356 (30%), Positives = 171/356 (48%), Gaps = 14/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG A+G+
Sbjct: 1 MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIRAQGS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ V+ +
Sbjct: 61 TCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVEHGL 120
Query: 131 ESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E L+ ++ V+ R + K+A+S D +A S IT ++ V RA+
Sbjct: 121 LQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRWRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
S AIL GIGTV+ DDP L R P+R++LD + ++++
Sbjct: 181 SSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLLSLRGP 240
Query: 243 APVIIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++ +L R + + DL L+ +L R + L VE GA +A
Sbjct: 241 VMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGARLAG 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCL 352
S + + L+D ++LY + ++GE + G G D L
Sbjct: 301 SLLQAGLMDELVLYIAPKLMGEAALGLLQLPGIQTMRDCIEVDIKEMRAVGQDWRL 356
>gi|242374059|ref|ZP_04819633.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis M23864:W1]
gi|242348184|gb|EES39786.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis M23864:W1]
Length = 347
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 166/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AG+ A+
Sbjct: 3 RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGQAAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPC+H+G +PPC IIE GI++V+ + D + +G + L + GI V+
Sbjct: 63 DATIYVSLEPCTHHGSTPPCVDKIIEFGIKKVIYAIKDTT--LVSKGDEILKEAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QFNEDAAELYKDFFPAKRKGIPELTVKVSSSLDGKQATDLDESKWITNKEVKEDVYRLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ ADDP T R+ +P+R+IL ++ + ++ K I
Sbjct: 181 EHDAVVTGRKTIEADDPLYTTRVPD--GKNPIRVILSKTGDINFEHQLFKDTTSQIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+I II + ++L L RG+ LLVE G + F+ S +
Sbjct: 239 ENEKLKNNDK-----HIEIINMQECETTEILKDLYRRGIGKLLVEAGPNITSQFLQSDHL 293
Query: 309 DSIILYRSQIVIGEGGIPSPLE-----EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYLAPKLIGGSGKHQFFKTDEVIDLPEATQFEIVYSKLINQNIKLKLRKK 347
>gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica RB50]
gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica RB50]
Length = 374
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 112/356 (31%), Positives = 171/356 (48%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV AL EA G
Sbjct: 1 MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+GL L GI V
Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVT 120
Query: 128 RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + + L+A ++ + + LK+A S D + S ITG ++ H
Sbjct: 121 EDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+S +L G+GTVL DDP+L R H P + ++D F++ D+++ V
Sbjct: 181 RARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLVF 239
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGGAAVAHSFI 303
+ +A R + + D L + L + + + VE GA ++ + +
Sbjct: 240 TARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALL 299
Query: 304 NSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD +++Y + +++G+ LE + F G+DV L
Sbjct: 300 AEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRARV 355
>gi|254500590|ref|ZP_05112741.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
gi|222436661|gb|EEE43340.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11]
Length = 375
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 162/372 (43%), Positives = 218/372 (58%), Gaps = 16/372 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAE 56
++ D RFM+AA R +R +G NP+VA LIV++ +++GRGVT+ G HAE
Sbjct: 3 SITETDNRFMAAAERLARRGLGRVWPNPAVAALIVQENSEGVPVLVGRGVTSRPGMAHAE 62
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V AL +AGE A+GAT YVTLEPCSHYGR+PPC+ +IE G+ RVVV + DP+ RVSGRG+
Sbjct: 63 VNALTQAGELAKGATCYVTLEPCSHYGRTPPCSLALIEAGVSRVVVGMMDPNPRVSGRGV 122
Query: 117 QWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + E K + RQ R + LK+AVS+D IG G G + I+
Sbjct: 123 GMLQDAGIELVTGVRERALKDLYRGFTYRQRRHRPSVFLKLAVSKDGFIGREGEGQIKIS 182
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G IS VH RA SDAILVGIGT LADDP+LTCRL GL SP+R+++D +L L SK
Sbjct: 183 GPISMRMVHGFRAASDAILVGIGTALADDPQLTCRLPGLHARSPVRVVVDRQARLPLMSK 242
Query: 236 IIKTALLAPVIIVTEND-----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+++T + PV +V N LA A D +L+ L RG+T L
Sbjct: 243 LVRTCVDVPVWLVCGNAADADKVNALAAAGVNIIRVPATQTGIDPDVILSALATRGITRL 302
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
+VEGGA +A SF+N+ L+D + + + IGEGGIP+ L + F + Y
Sbjct: 303 MVEGGARLASSFLNAGLIDDLCVVTGDMEIGEGGIPALHDLDLANVLTDPQFARIGAGYL 362
Query: 347 GSDVCLEYIGKN 358
G+D Y+ K+
Sbjct: 363 GAD-RYTYLRKS 373
>gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
Length = 372
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 122/369 (33%), Positives = 184/369 (49%), Gaps = 11/369 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ VSG+GL L
Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R R + LK A S D ++ S ITG ++
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P+L R P RI+LD ++ LD ++
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVRSFP-TLRQPARIVLDSRLQIPLDCHLVTDTD 240
Query: 242 LAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
VI+ +D+ R + +L L+ L G +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ LVD I+LY++ ++G G +P + + + G D+
Sbjct: 301 TLTSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWQSQSVEIIGQDIKW 360
Query: 353 EYIGKNLCL 361
K +
Sbjct: 361 VLRKKIRLI 369
>gi|56416383|ref|YP_153457.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
Maries]
gi|222474753|ref|YP_002563168.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
Florida]
gi|254994610|ref|ZP_05276800.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
Mississippi]
gi|56387615|gb|AAV86202.1| riboflavin biosynthesis protein [Anaplasma marginale str. St.
Maries]
gi|222418889|gb|ACM48912.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
Florida]
Length = 371
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 137/354 (38%), Positives = 189/354 (53%), Gaps = 7/354 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AG
Sbjct: 3 DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+
Sbjct: 63 EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122
Query: 125 IVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L+ + ++R IT+K+A + D I + IT +++ V
Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ +
Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
P I T+NDD A R I L G+T L VEGG + +
Sbjct: 243 PTYIATDNDDHKALHAVRYLRICERGDFLAGTMNALAE--ELGITRLFVEGGGVLVTELL 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEY 354
LVD I R+ V GE G+ S L L +F V+ F D +
Sbjct: 301 KRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTVDIF 354
>gi|302333432|gb|ADL23625.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 343
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 109/352 (30%), Positives = 160/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGNKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ +
Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDDTLRAHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTLIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Limnobacter sp. MED105]
gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Limnobacter sp. MED105]
Length = 377
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 112/374 (29%), Positives = 175/374 (46%), Gaps = 18/374 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +M AL + T+ NP V C+ V+DG+ I G A G HAEVQA+
Sbjct: 3 TFSPTDEHWMQHALNLAWKGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIA 62
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ G G+TAYVTLEPC+H+GR+ PCA+ ++ G+ RVV V DP+ VSG+G+
Sbjct: 63 DSRARGVSLAGSTAYVTLEPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAI 122
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI + + + + +R +R + LK+A S D + + S ITG
Sbjct: 123 LQAAGIETAHGVLIEQARWINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGE 182
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-- 235
++ H LRAQ+ A+L GIGTV AD+P+L R E P+++I+D ++S D++
Sbjct: 183 AARLHGHHLRAQACAVLSGIGTVKADNPQLNVRGID-TERQPLKVIVDSKLEISPDARLL 241
Query: 236 --------IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + DL +LL L RG+
Sbjct: 242 QSGRVLIAHTEPHRPGWLTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQRGI 301
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRD 344
L +E G + SF+ + LVD I+ Y + +G G L E ++ +
Sbjct: 302 NELHLEAGFGLNGSFLQAGLVDEIVQYIAPRFLGPGQGLFRLPELEALPAYVSWAIQSFE 361
Query: 345 YFGSDVCLEYIGKN 358
G D+ + ++ N
Sbjct: 362 QIGPDLRITWVQNN 375
>gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 113/356 (31%), Positives = 175/356 (49%), Gaps = 10/356 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M A+ + G TS NP V +I+ + ++G G G PHAE+ A+E+AG A+
Sbjct: 13 WMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSLAK 72
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T V LEPC H G++PPC I+ GI+RVVV + DPD RVSG+G+ +L + GI V
Sbjct: 73 GGTLLVNLEPCCHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEVVT 132
Query: 129 MMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + FL+ + R TLK A+S D IG++ S I+G S+ +VH LR
Sbjct: 133 GILEKEAAFLNRAFIFRNRTGRPWGTLKWAMSFDGRIGLSNGKSKWISGEKSRKRVHSLR 192
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A++DA++VG GTV +D+P LT R E P+R++ L ++++ T LA +I
Sbjct: 193 AKNDAVIVGGGTVRSDNPLLTTRGIADIE--PLRVVCSSTLDLPKEAQLWNT-ELAKTLI 249
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ L + + K++ L RG +L E G+++A I
Sbjct: 250 FYGPESDARCLENLPSGPERLCLEENTPIKVMEALAQRGCNQVLWECGSSLATKAIQQNC 309
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
V + L+ S ++G +PL + V + G D L + N
Sbjct: 310 VQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEVSSNKSGEDFVLNMLFDN 365
>gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 350
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 124/345 (35%), Positives = 179/345 (51%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH
Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140
+GR+ PCA+ I++ GI++VVV DP+ VSGRG+Q L GI V + E E K
Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEV 121
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV
Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R+ +P+RIILD ++ +++ I+ I T N A
Sbjct: 182 QKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANIVTDGEAPTWIFTTSNHAGEKKKAL 239
Query: 261 RK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY +
Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+IG PS +E + K F + G D +
Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDYRYIGYPE 344
>gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5]
gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5]
Length = 353
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 110/365 (30%), Positives = 166/365 (45%), Gaps = 22/365 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A
Sbjct: 1 MASVSVDEA-MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG ARG TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ SG
Sbjct: 60 LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASGGAATLR 119
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ + + E + A+LT ++ K A + D A S+ IT +
Sbjct: 120 AAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPE---LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+ VH LR DA+L G+GTVL DDP R + P+R+++D + D+++
Sbjct: 180 RIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARV 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
A + E DL LL L RGV + L+EGG
Sbjct: 240 RDGAARTWIATAAEVG--------------AGPDGRVDLPALLAELHHRGVRAALLEGGP 285
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A +F+ + LVD I+ Y + ++G G + + + + G D+ +
Sbjct: 286 TLAGAFLAAGLVDRIVGYVAPKLLGAGPTALLDAGVSTIADAIDLEITDVTRVGPDLRIT 345
Query: 354 YIGKN 358
+ +
Sbjct: 346 ALPRK 350
>gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD
[Candidatus Kuenenia stuttgartiensis]
Length = 367
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 127/365 (34%), Positives = 186/365 (50%), Gaps = 14/365 (3%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
MP + D +M+ AL + G+ NP V +IVK+ ++G+G G HAE+ A
Sbjct: 1 MPLMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNNEIVGKGYHKNYGGAHAEIHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ E G +GAT YVT+EPC+HYG++ PCA II GI +VV DP+ SG+G++ L
Sbjct: 61 INEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+A + + +I +K A+S D I S IT
Sbjct: 121 QAAGITVRMGVMEDQAKKLNAPFFKLIQKGMPYIIVKWAMSIDGKIATVTGDSKWITSEE 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH LR+Q D ++VGI TVL DDP LTCR NG +P RII+D L L S +I+
Sbjct: 181 SRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNG--GRNPKRIIIDSRASLPLTSALIR 238
Query: 239 TALLAPVIIVTENDDPVL-----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
T + +II + P + + D DLK+L L +T+++VE
Sbjct: 239 TVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVDLKELFLKLGSMRLTNIMVE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGS 348
GG+ + S + RL D II++ + I+IG G SP+ +E VR F
Sbjct: 299 GGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGVENVCDALKIREVRHYRFSD 358
Query: 349 DVCLE 353
D+ +E
Sbjct: 359 DIVVE 363
>gi|110633489|ref|YP_673697.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Mesorhizobium sp. BNC1]
gi|110284473|gb|ABG62532.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chelativorans
sp. BNC1]
Length = 370
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 169/365 (46%), Positives = 228/365 (62%), Gaps = 10/365 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GI---VIGRGVTAYGGCPHAEV 57
P+S+ D RFM+AA+R SR H+GLT NPSV CLIV+D G ++GR VTA GG PHAE
Sbjct: 5 PISAHDRRFMAAAVRLSRRHLGLTGANPSVGCLIVRDDGEGPYIVGRAVTAIGGRPHAES 64
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
QALEEAGE ARGATAYVTLEPC+H+GR+PPC+ +I G+ RVV DPD+RVSG+G
Sbjct: 65 QALEEAGELARGATAYVTLEPCAHHGRTPPCSLALIAAGVARVVGAASDPDLRVSGKGYS 124
Query: 118 WLSQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L G +V+ ++ +E L YLTR +KR +TLK+A+S D IG G G V IT
Sbjct: 125 MLRAAGIEVVEGLLAAEAADLLAGYLTRSTKKRPEVTLKVALSADMKIGREGQGQVRITE 184
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
I++ QVH++RA++DAIL+G GT LADDP LT RL GL+ SP RI+LD H +L DS +
Sbjct: 185 AIARRQVHMMRAEADAILIGNGTALADDPLLTSRLPGLEARSPARIVLDRHLRLPPDSVL 244
Query: 237 IKTALLAPVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ TA P+++ D A + + L + L L RG+++L+
Sbjct: 245 VSTAREVPLLVTAAQDVDSERRAALAAAGVELIGVEAFDGHIALPEFLEDLAARGISTLM 304
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
VEGGA A F++ LVD + L+ + IG+ GI SP++ ++ F R FG D+
Sbjct: 305 VEGGAFTAREFLSEDLVDRLCLFVGRGKIGDEGIASPVDLDHIPSGFAKRREARFGEDLY 364
Query: 352 LEYIG 356
EY+
Sbjct: 365 FEYVR 369
>gi|255003850|ref|ZP_05278651.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
Virginia]
Length = 360
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 137/354 (38%), Positives = 189/354 (53%), Gaps = 7/354 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AG
Sbjct: 3 DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+
Sbjct: 63 EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122
Query: 125 IVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L+ + ++R IT+K+A + D I + IT +++ V
Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ +
Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
P I T+NDD A R I L G+T L VEGG + +
Sbjct: 243 PTYIATDNDDHKALHAVRYLRICERGDFLAGTMNALAE--ELGITRLFVEGGGVLVTELL 300
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEY 354
LVD I R+ V GE G+ S L L +F V+ F D +
Sbjct: 301 KRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTVDIF 354
>gi|172058721|ref|YP_001815181.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
255-15]
gi|171991242|gb|ACB62164.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum
255-15]
Length = 348
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 116/356 (32%), Positives = 179/356 (50%), Gaps = 15/356 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ +R G TS NPSV C+I K G V G G + G PHAEV+AL AGE ARGA
Sbjct: 5 MHQAMQLARMLDGQTSPNPSVGCVITKHGKVFGFGAHRFAGGPHAEVEALNMAGEAARGA 64
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPC+H+G++PPC + I+ GI+RV V +D V+G+G++ L G+ V+ +
Sbjct: 65 DLYVTLEPCNHHGKTPPCTEAILAAGIKRVFVATEDRHAIVAGQGIKRLRDAGLTVEVGL 124
Query: 131 ESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + + + R ++T+K+A S + ++ IT ++ LRA
Sbjct: 125 LEDEAVRFYTPFWQSLKRNRPNVTVKVAQSLNGIVTT--GEQRFITSLAAREAGRELRAT 182
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAILVG TVL DDP LT R E P+RI++D +L ++I + L +
Sbjct: 183 HDAILVGSETVLVDDPALTLRTEAGPE--PIRIVVDRRGRLPETAQIFRDGLNTTYWLTE 240
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ + +++L L +G+ S+L+EGG + +F+ + LVD
Sbjct: 241 QPRVSAQSNVTALVGTY------ATPEQILETLYAQGIHSVLIEGGPTIQSAFLEADLVD 294
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK--NLCLQE 363
+ +Y++ V+ G+P +E F G DV L Y K C Q+
Sbjct: 295 RLEVYQAPSVL--KGMPGLASAVEIEDRFDLTAVAPIGQDVHLRYARKGDGSCSQD 348
>gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
Length = 367
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 107/358 (29%), Positives = 164/358 (45%), Gaps = 12/358 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---G 64
+M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G
Sbjct: 4 FYMNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+
Sbjct: 64 NDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGV 123
Query: 125 IVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E + + +R + + +K A S D + + S IT ++
Sbjct: 124 DVEIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADG 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA++ IL GIGTVL D+P L R + ++D + D+ ++K
Sbjct: 184 HAWRARACTILTGIGTVLEDNPRLNVRDQPTPRQPRI-AVVDSKLDIPPDAHVLKAPSGC 242
Query: 244 PVIIV--TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ ++ L DL LL L RG L VE G + S
Sbjct: 243 FIYTCSINQSKIEKLRALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNGS 302
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
I LVD ++ Y++ ++G G + PL+ G D+ +
Sbjct: 303 LIREGLVDELLFYQAPKLLGTGAMGIANFGPLDSLEQGLPLEFHDVARMGPDLRIVAR 360
>gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 348
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/336 (29%), Positives = 165/336 (49%), Gaps = 8/336 (2%)
Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
+ NP V ++VK+G +IG G G PHAEV AL +AGE A G T YV LEPC+HYGR+
Sbjct: 8 NPNPMVGAVVVKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCNHYGRT 67
Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-GKIFLHAYLTR 144
PPC + +I + +VVV + DP+ VSG+GL L GI V +E + A+ R
Sbjct: 68 PPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEVIVGVEETACRRLNEAFCHR 127
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+ + LK A++ D I + S +TG S+ VH RA DA++VG TV D+
Sbjct: 128 ILHHQCFGILKYAMTLDGKIATSTGHSAWVTGTTSRQLVHQTRAGCDAVIVGGNTVRRDN 187
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P L ++ +P+R+++ + L ++ + + ++ +P L R K
Sbjct: 188 PHL--TIHQATGRNPLRVVMSRNLHLPQEANLWDVQVAPTLVFTEWGKNPSLQAELRSKG 245
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ ++ +++ +L R ++S+L E G + I ++ ++ + + +IG
Sbjct: 246 VEVLELSPLSPAQVMEVLYERQLSSILWECGGVLGAQAIREGVIQKVMAFMAPKIIGGVS 305
Query: 325 IPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355
SP+ + LEK V D+ +E
Sbjct: 306 AASPVGDLGLEKMSDALLLESVILRQVDQDILVEGY 341
>gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Herminiimonas arsenicoxydans]
gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Herminiimonas arsenicoxydans]
Length = 363
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 117/360 (32%), Positives = 177/360 (49%), Gaps = 10/360 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + S D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL
Sbjct: 1 MEIHS-DVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQAL 59
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G + G+T YVTLEPCSH+GR+PPCA +I + RVV + DP+ V+G+GL
Sbjct: 60 NDAANKGYDVAGSTVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLA 119
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + E+E + +L+R + + +K A S D M + S ITG
Sbjct: 120 RLEAAGIEVACGVLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITG 179
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H+ RA++ AIL GIGTV DDP+LT R P RI++D ++S +++
Sbjct: 180 DEARADGHVWRARACAILTGIGTVREDDPQLTVRAID-IPRQPQRIVIDSQLQISPHARV 238
Query: 237 IKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ V + +L + + DL L+ L R + L VE G
Sbjct: 239 LSGGGTWIVAAQAHPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAG 298
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
+ S I VD +++Y + ++G+ LE +KN G+D+ +
Sbjct: 299 FKLNGSLIREDCVDELLVYLAPTLLGDAQRMFNLPVLESLEQKKNMTFHEVKQIGADLRI 358
>gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1]
gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC]
gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10]
gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC]
Length = 368
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 9/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ + NP V C+IVK+G +IG G G PHAE +A+
Sbjct: 4 FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E G+ YVTLEPC HYG +PPC +I+ + V V + DPD RVSGRG+ L +
Sbjct: 64 ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E +YL ++ + + +K A + D + S IT ++
Sbjct: 124 GICVYEGLGKEEAERSLKSYLYQRTHGKPWVVIKSAATLDGQVADKDGQSQWITCPEARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDP--ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA S AI+VG TVL D+P L P+R+++D + ++ I +
Sbjct: 184 DVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRVVVDSKGVIPPEANIFHS 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ + ++ +L +L+T L +LVEGGA
Sbjct: 244 TGKSLYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHELMTYLSTTHTLQVLVEGGA 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCLE 353
+ SF+ RL ++++LY ++G+ P + G + + + + G+ +
Sbjct: 304 VLHTSFLKERLANTLVLYLGPKILGDQRKPIFGDLGLYLHSSQKIVPTFSEILGNSLKTS 363
Query: 354 YIG 356
+
Sbjct: 364 WEV 366
>gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 370
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 184/364 (50%), Gaps = 13/364 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AL ++ TS NP V +IVK+G +I G G PHAE +A+ A E
Sbjct: 7 DDKFFMKKALLLAKKANWRTSPNPMVGAVIVKNGKIISEGYHKKAGLPHAEAEAIRNANE 66
Query: 66 EARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+GAT YVTLEPC H + PPC II GI RVV+ + DP+ +VSG+G++ L+ GI
Sbjct: 67 SLKGATLYVTLEPCCHKDKKTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E E K Y+ R + LKIA++ D I S IT S+ V
Sbjct: 127 KVIEGVLEEEVKKLNEFYIKYITTSRPFVILKIAMTLDGKIATPLGESKWITSEKSRKFV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL+R++ DA+L GTVL D+P T R+ G +P+R+I+DP K+ L+ +
Sbjct: 187 HLIRSRVDALLSAYGTVLKDNPMFTSRIKG--GKNPLRVIIDPELKIPLNYHVYNPPPNT 244
Query: 244 P--VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V ND + L R I + DL+ L+ L R +TSL++EGG+++
Sbjct: 245 IAVVHEKKLNDKNIKHLIHRGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSLNSY 304
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF------MCVRRDYFGSDVCLEYI 355
+ S +VD ++++ + +IG P G + KN ++ FG D+ +E
Sbjct: 305 ALWSGIVDKLMIFIAPKIIGG-AQSYPSIGGNIYKNLDEAFEIKDLKIRMFGGDIFIEGY 363
Query: 356 GKNL 359
K L
Sbjct: 364 LKGL 367
>gi|253735372|ref|ZP_04869537.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
TCH130]
gi|269203407|ref|YP_003282676.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ED98]
gi|253726661|gb|EES95390.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus
TCH130]
gi|262075697|gb|ACY11670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus ED98]
Length = 343
Score = 199 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 108/352 (30%), Positives = 160/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A GA
Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ +
Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVECVD 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + + ++ IT+K++ S D S IT K V+ LR +
Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+L G TV DDP+ T R+ +P+++IL + + +I + I
Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ L + +I IIY DL +L L RGV +LLVE G F+ S +D
Sbjct: 237 PN-----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
ILY + +IG G + E F V + +V L K
Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343
>gi|70726154|ref|YP_253068.1| riboflavin specific deaminase [Staphylococcus haemolyticus
JCSC1435]
gi|68446878|dbj|BAE04462.1| riboflavin specific deaminase [Staphylococcus haemolyticus
JCSC1435]
Length = 347
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 101/353 (28%), Positives = 163/353 (46%), Gaps = 14/353 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
FM A++ ++ G T NP V ++V +G ++G G G HAEVQAL+ AG+EA+G
Sbjct: 4 FMEYAIQLAQMVKGQTGINPPVGAVVVNNGRIVGLGAHLKQGEKHAEVQALDMAGKEAKG 63
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
Y++LEPC+H+G +PPC IIE G+ +V+ V D + G L Q GI V+
Sbjct: 64 GIIYISLEPCTHFGSTPPCVNKIIEFGLSKVIYAVKDTTLPSE--GDAILEQAGIDVEYQ 121
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + + + IT+K++VS D S IT K V+ LR
Sbjct: 122 YSEEAAALYKDFFKAKSGQIPEITMKVSVSLDGKQATDLGQSKWITNSEVKQDVYHLRHT 181
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+L G GT+ AD+P T R+ +P+RI+L + ++ + + I
Sbjct: 182 HDAVLTGNGTINADNPLYTTRIPN--GKNPIRIVLAKSGNVDFTKQLFQDSSSEVWIYTE 239
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
L +NI +I D LK +L + RG+ SLL+E G + F+ + ++
Sbjct: 240 NQ-----TLESPNRNIKVICIDKCYLKDILKDIYKRGIGSLLIEAGPRITSKFLQTDFIN 294
Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+I+Y + +IG G + + F + ++ + K
Sbjct: 295 QLIIYYAPKIIGGSGKNQFYQTADIIDLNETTQFEISSTELINQNLKMILRKK 347
>gi|329735920|gb|EGG72197.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
VCU045]
Length = 347
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +
Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ AD+P T R+ P+R+IL +L + +I K I
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVPD--GKHPIRVILSKKGQLDFNQQIFKDTASEIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
K I II D +L L RG+ LLVE G + F+ S+ +
Sbjct: 239 ENEKLK-----TNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347
>gi|328543537|ref|YP_004303646.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [polymorphum gilvum SL003B-26A1]
gi|326413281|gb|ADZ70344.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Polymorphum gilvum SL003B-26A1]
Length = 388
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 152/368 (41%), Positives = 210/368 (57%), Gaps = 14/368 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQAL 60
D R+M+AA+ +R +G NPSV LIV D +V+GRGVT+ G PHAEV AL
Sbjct: 20 DIDRRYMAAAVALARRGLGRVWPNPSVGALIVADTGGAPVVVGRGVTSPPGGPHAEVNAL 79
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+ ARGAT YVTLEPCSH+GR+PPC+ ++ G+RRVV+ + DP+ RVSGRG+ L
Sbjct: 80 RQAGDRARGATCYVTLEPCSHHGRTPPCSAALVSAGVRRVVIGIADPNRRVSGRGIGMLR 139
Query: 121 QKGIIVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +E + + R + +R +TLK+A+S D IG G G + ITG +S
Sbjct: 140 DAGIAVTVGVEAVACRDLHLGHSLRVLAQRPAVTLKLALSADGFIGRLGAGQIAITGSLS 199
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
K H +RA+SD ILVG+GTVLADDP+LTCRL GL+ SP+R++LDP+ +L L S+++++
Sbjct: 200 KRFAHGIRARSDGILVGVGTVLADDPQLTCRLPGLEGRSPVRVVLDPNARLPLGSRLVRS 259
Query: 240 ALLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A PV V N A + D LT L RG+T ++VEG
Sbjct: 260 AAEVPVWAVVANAADPDRLGALARAGVLIIRVPAGPEGIDPLVALTALSARGITRVMVEG 319
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDV 350
G+ VA +F+ + +VD L +G GG+ EG F V +G D
Sbjct: 320 GSRVAAAFLRADMVDEAWLVHGPASLGAGGVLPFGAEGADALAGTGRFHVVETGIWGEDH 379
Query: 351 CLEYIGKN 358
+ Y K
Sbjct: 380 YVRYRRKE 387
>gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240013]
Length = 370
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 127/366 (34%), Positives = 183/366 (50%), Gaps = 12/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M ALR + TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E + + +L+R +R + LK AVS D ++ S ITG ++
Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPLDSHLLTDGQ 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGA 296
I E ++ L +I I+ DL L+ +L G ++VE G+
Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVC 351
+ +F+ L D I+LYRS ++G GG + V + G D+
Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGGGGLFCLLENRAALSAPPLWTPVSSEILGHDIK 360
Query: 352 LEYIGK 357
+
Sbjct: 361 TVFRKN 366
>gi|227893613|ref|ZP_04011418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus ultunensis DSM 16047]
gi|227864473|gb|EEJ71894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus ultunensis DSM 16047]
Length = 352
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 155/350 (44%), Gaps = 7/350 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
D +M+ AL+ ++ T NP V +IVK+ V+ G + G HAE A+ +
Sbjct: 2 EKDQYYMNLALQEAKKGRFQTWKNPMVGAVIVKNNQVLATGHHIHYGQNHAERDAISKLT 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+HYG+ PPC+ I++ I+RVV+ DP V+G+G+ L
Sbjct: 62 PEQLFNSTLYVTLEPCNHYGKQPPCSDLIVKSKIKRVVIGQVDPHKLVTGKGIAKLKSHN 121
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + S+ + Y + IT+K A S D + IT +
Sbjct: 122 IEVKTGVLTSKIEELNKFYNYFYRNNKPWITIKEATSLDYRVSQNKNTRTNITNQSVYFR 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA AI++G T + DDP L + + + LD K++
Sbjct: 182 VHQERANYQAIMIGSSTAIIDDPSLLTSVKTDYPPIRVIVDRRGRLLNHLDLKVLTDHQS 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I D NI ++ +L +++ L R + S+ VEGG +A SF
Sbjct: 242 LTWIFTQNKDLIRK---KFNDNIQVLLMKSNELSEVVNKLAQREIQSIYVEGGPTLARSF 298
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+N L + +I Y + +G G L G L N V+ + +++ +
Sbjct: 299 LNEDLANELIDYIAPTFLGSAGPAGVLPRGNL--NLHNVQIENLNNNIRI 346
>gi|260466843|ref|ZP_05813027.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
WSM2075]
gi|259029345|gb|EEW30637.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum
WSM2075]
Length = 376
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 161/363 (44%), Positives = 213/363 (58%), Gaps = 10/363 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQAL 60
+ D RFM+AALR SR + G TSTNPSV LIV+D +++G GVTA GG PHAE +AL
Sbjct: 13 ALDHRFMAAALRLSRRNAGRTSTNPSVGTLIVRDDGAGPMIVGTGVTAVGGRPHAETEAL 72
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG+G L
Sbjct: 73 AEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGASSDPDPRVSGKGYAILR 132
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + A + +KR + LK+A+S D IG G G V ITG ++
Sbjct: 133 AAGIEVVEKVLAAQAAEQMAGYLIRSLKKRPEVILKLALSSDGKIGREGAGQVAITGDMA 192
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L SK++
Sbjct: 193 RREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLVSG 252
Query: 240 ALLAP-----VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
P + L A + + L +LL L G+ S+LVEG
Sbjct: 253 VDRVPLYVAACLQADPQRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLVEG 312
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA VA +F+ LVD I+L++ IGEGGI SP++ ++ F +R FG D E+
Sbjct: 313 GARVASAFLADGLVDRIVLFQGPEAIGEGGIASPIDGDHIPAGFRKLREMRFGEDGYAEW 372
Query: 355 IGK 357
I
Sbjct: 373 IRD 375
>gi|269958267|ref|YP_003328054.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
gi|269848096|gb|ACZ48740.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel]
Length = 365
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 139/352 (39%), Positives = 187/352 (53%), Gaps = 5/352 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
D RFMS ALR +R +G T NP+V C+I G ++GRG TA GG PHAEV AL AGE
Sbjct: 4 DERFMSIALRLARRGLGNTYPNPTVGCVITNGAGSIVGRGWTAMGGRPHAEVVALRHAGE 63
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A G+TAYVTLEPC H G++ PC +I G+RRVV+ DPD RVSG+G + LS+ G+
Sbjct: 64 AAAGSTAYVTLEPCCHRGQTGPCTAALINAGVRRVVIAALDPDERVSGKGAKSLSEAGVE 123
Query: 126 VDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + L+A + R +T+K+A + D I + IT +++ VH
Sbjct: 124 VKLGVLQQQAEELNAGFFYSKTRSRPFVTVKLATTLDGKISLPSGDERWITNELTRKWVH 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P
Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLRAHHKVVATSDVVP 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I T+ND+ A R + LT G+T L VEGG + +
Sbjct: 244 TYIATDNDNHETLCAARYLKVGGKGDFLARTMSALTE--ELGITRLFVEGGGVLVTELLK 301
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
RLVD I R+ V G G S L +F V+ F D +
Sbjct: 302 RRLVDQFIWCRAAKVCGTGAAESILS-LDARCHFSRVKTLTFMGDTVEVFRV 352
>gi|319401074|gb|EFV89293.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
FRI909]
Length = 347
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 100/354 (28%), Positives = 155/354 (43%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG A+
Sbjct: 3 RFMDDAIQLAQMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNAQ 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ AD+P T R+ + + + +
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVPDGKHPIRVILSKTGQLDFNQQIF-------KDTASE 233
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L K I II D +L L RG+ LLVE G + F+ S+ +
Sbjct: 234 IWIYTENEKLKTDKSFIKIINISNCDTATILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347
>gi|190571227|ref|YP_001975585.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|190357499|emb|CAQ54935.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
Length = 405
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 129/398 (32%), Positives = 185/398 (46%), Gaps = 48/398 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FMS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A +
Sbjct: 3 DDYFMSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDL 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
AT YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI V
Sbjct: 63 THSATMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEV 122
Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ + + L+ + T + R I KIA + D I S IT ++N VH
Sbjct: 123 EQGIMQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL--- 242
LRA+ DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA
Sbjct: 183 LRAKYDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYN 242
Query: 243 ----------------------------------------APVIIVTENDDPVLALAFRK 262
+ +I +
Sbjct: 243 HDLSKEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYL 302
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ ++ G+T LLVEGG + + L+D +I+ RS ++G
Sbjct: 303 VVNSNNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGN 362
Query: 323 GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIG 356
P + G N F V+ F DV +
Sbjct: 363 DATPFIGDLGIQSINNCHKFKKVKIIEFSEDVVEVWDR 400
>gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
Length = 361
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 122/358 (34%), Positives = 181/358 (50%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G
Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI +
Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA
Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I
Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFP-TLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239
Query: 249 TENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
E ++ L ++ I+ DL L+ +L G ++VE G+ + +F+
Sbjct: 240 LERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEYIGK 357
L D I+LYRS ++G G L E + V + G ++ +
Sbjct: 300 AENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIKTVFRKN 357
>gi|27468359|ref|NP_764996.1| riboflavin specific deaminase [Staphylococcus epidermidis ATCC
12228]
gi|27315905|gb|AAO05040.1|AE016748_274 riboflavin specific deaminase [Staphylococcus epidermidis ATCC
12228]
Length = 347
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +
Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ AD+P T R+ P+R+IL +L + +I K I
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVPD--GKHPIRVILSKKGQLDFNQQIFKDTASEIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
K I II D +L L RG+ LLVE G + F+ S+ +
Sbjct: 239 ENEKLK-----TNKSFIKIISISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347
>gi|57867218|ref|YP_188900.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
RP62A]
gi|57637876|gb|AAW54664.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
RP62A]
Length = 347
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +
Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ AD+P T R+ P+R+IL +L + +I K I
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVPD--GKHPIRVILSKKGQLDFNQQIFKDTASEIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
K I II D +L L RG+ LLVE G + F+ S+ +
Sbjct: 239 ENEKLK-----TNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347
>gi|251811149|ref|ZP_04825622.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis BCM-HMP0060]
gi|282875812|ref|ZP_06284679.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
SK135]
gi|251805369|gb|EES58026.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis BCM-HMP0060]
gi|281294837|gb|EFA87364.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
SK135]
gi|329730651|gb|EGG67035.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
VCU144]
gi|329737423|gb|EGG73677.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
VCU028]
Length = 347
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 103/354 (29%), Positives = 161/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +
Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ T + + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++ G T+ AD+P T R+ P+R+IL +L + +I K I
Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVPD--GKHPIRVILSKKGQLDFNQQIFKDTASEIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ NI+ +L L RG+ LLVE G + F+ S+ +
Sbjct: 239 ENEKLKTDKSFIKIINISNCDTTT-----ILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + + F V ++ L+ K
Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347
>gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
sediminis HAW-EB3]
gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
sediminis HAW-EB3]
Length = 374
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 180/372 (48%), Gaps = 17/372 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D MS A++ +R + T NP V ++ K G VIG G G PHAEV AL A
Sbjct: 3 SVEDIEMMSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAMA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVVV ++DP+ +VSGRG++ L+ G
Sbjct: 63 SDNAKGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDAG 122
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD + + ++ ++++ IT+K+A S D + S ITG ++
Sbjct: 123 IQVDVGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARRD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKLSL 232
V LRA+ A++ GI TVL DDP L R + + H P+R+ILD +L+
Sbjct: 183 VQRLRARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLTK 242
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG--VTSL 290
K+ ++ T+ + + D L + G S+
Sbjct: 243 GFKLFSVNSPILLVSCTDYPLEEQTAWPEHVSHLKLPADDCGRVVLSLLFKHLGQSCNSV 302
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYF 346
L+E GA +A S I D ++LY++ ++G G GY +
Sbjct: 303 LIEAGATLAGSVIEQGHGDELVLYQAMKILGSAGRNLISLPGYEAMADIPAVELIDERKL 362
Query: 347 GSDVCLEYIGKN 358
G D L ++
Sbjct: 363 GKDTRLTLKIRS 374
>gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
Length = 353
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 110/365 (30%), Positives = 166/365 (45%), Gaps = 22/365 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A
Sbjct: 1 MASVSVDEA-MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG ARG TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ SG
Sbjct: 60 LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASGGAATLR 119
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ + + E + A+LT ++ K A + D A S+ IT +
Sbjct: 120 AAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPE---LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+ VH LR DA+L G+GTVL DDP R + P+R+++D + D+++
Sbjct: 180 RIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARV 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
A + E DL LL L RGV + L+EGG
Sbjct: 240 RDGAARTWIATAAEVG--------------AGPDGRVDLPALLAELHHRGVRAALLEGGP 285
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A +F+ + LVD I+ Y + ++G G + + + + G D+ +
Sbjct: 286 TLAGAFLAAGLVDRIVGYVAPKLLGAGPTALLDAGVSTIADAIDLEITDVTRVGPDLRIT 345
Query: 354 YIGKN 358
+ +
Sbjct: 346 ALPRK 350
>gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella petrii DSM 12804]
gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella petrii]
Length = 380
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 108/370 (29%), Positives = 169/370 (45%), Gaps = 13/370 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
D +M AL +R + T+ NP V C+IV+DG V+G G T G PHAE+ AL +A
Sbjct: 7 PDDLIWMRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAA 66
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
GE +GAT YVTLEPCSHYGR+PPCA + G RVVV + DP+ +V G+GL L
Sbjct: 67 ARGESVQGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRA 126
Query: 122 KGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + ++ R +K+A S D + S ITG ++
Sbjct: 127 AGIAVTSNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAAR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H RA+S +L G+GTVL D+P L R +P + ++D F + D++ +
Sbjct: 187 ADGHAWRARSCVVLTGMGTVLKDNPRLNVRAVE-TPRAPRKAVVDGDFAIPEDAR-LFDG 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + LA R + DL ++ L + VE GA
Sbjct: 245 AEVIIFTARTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAGAG 304
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + +++ +D +++Y + +++G+ +E + G D+ L
Sbjct: 305 LGGALMSAGCIDELLVYLAPVLLGDAAAMLRLPLIEHLDHARRLEFTDTARIGPDLRLR- 363
Query: 355 IGKNLCLQEL 364
+ Q L
Sbjct: 364 ARDSTRWQAL 373
>gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916]
Length = 386
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 117/380 (30%), Positives = 181/380 (47%), Gaps = 21/380 (5%)
Query: 3 VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58
+S+ + R+ M AL+ + G TS NP V +++ G ++G G A G PHAEV
Sbjct: 1 MSAAEQRWIPWMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVG 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL +AG+ ARG T VTLEPC H+GR+PPCA +I GI+RVVV + DPD RV+G GLQ
Sbjct: 61 ALAQAGDAARGGTIVVTLEPCCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQR 120
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L G+ V + E+E A++ R R LK A+ D ++ S I+G
Sbjct: 121 LRDAGLEVISGVLEAEAAYQNRAFVHRVQTGRPWGVLKWAMGLDGRTALSNGASQWISGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ VH LRA DA++VG GTV ADDP LT R G P+R++L L +++
Sbjct: 181 PARAWVHQLRAGCDAVIVGGGTVRADDPLLTSR--GRCASEPLRVVLSRSLDLPQSAQLW 238
Query: 238 KTALLAPVIIVTENDDPV---------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ ++ A + + + D + + L L RG
Sbjct: 239 DQTVAPTLVAHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEALFPELASRGCN 298
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----- 343
+L E G ++A + ++ V + + + V+G +PL + V
Sbjct: 299 RVLWECGPSLAAAALHQGCVQELAVVIAPKVMGGELARTPLGDLGFTAMDQVVPVSLAAA 358
Query: 344 DYFGSDVCLEYIGKNLCLQE 363
G D+ L+ + + +Q+
Sbjct: 359 QNLGRDLLLQGVVGAMPIQD 378
>gi|217076388|ref|YP_002334104.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
gi|217036241|gb|ACJ74763.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B]
Length = 343
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 103/355 (29%), Positives = 167/355 (47%), Gaps = 20/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+FM AL+ ++ G S NP V +IVKDG +I G G HAE A+ A
Sbjct: 2 EKFMKLALKLAKKGTGRVSPNPLVGAVIVKDGKIISTGYHKRYGDFHAERNAILNAKTSL 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T +V LEPC H+G++PPC II+ I +V + + DP+ V+G+G+ L + GI V
Sbjct: 62 EGSTLFVNLEPCCHHGKTPPCTDLIIKSKISQVFISILDPNPLVNGKGVDILRKNGIEVH 121
Query: 128 RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + + ++ +K ++ LK+A++ D I S IT + N H L
Sbjct: 122 VGLLEKEASYLNRVFIKFITKKTPYVALKVAMTLDGFICDNLGKSKWITK-NNFNISHNL 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R AI+VG TVL D+P+LTCR +P+RIILD KL+ + + ++
Sbjct: 181 RNFFTAIMVGANTVLKDNPQLTCR---NGGRNPIRIILDYEGKLAGKNFSVFDDQSRTIV 237
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ +K + +L L + S+L+EGGA+V F
Sbjct: 238 ----------FSSRCEKYNGAECYPETRPEDILERLYSLNIDSVLIEGGASVLSQF--YD 285
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF--MCVRRDYFGSDVCLEYIGKNL 359
D + L+ + + G+G E Y+++ F + ++ LE + KN+
Sbjct: 286 FSDELHLFYAPKIFGKGLSAFSGIEKYIDEEFDLKIKKIRRLKNEFYLE-VIKNV 339
>gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
Length = 369
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 109/368 (29%), Positives = 167/368 (45%), Gaps = 15/368 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M S+ FM+ AL + + L+S NP V C+IV +IG+G T G PHAEV A
Sbjct: 1 MTPSA---HFMNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMA 57
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L +A G + RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G
Sbjct: 58 LRDAAAKGNDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGF 117
Query: 117 QWLSQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+ L G+ V+ E + + +R + + +K A S D + + S IT
Sbjct: 118 ERLRAAGVDVEIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWIT 177
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
++ H RA++ IL GIGTVL D+P + R + ++D + LD+
Sbjct: 178 SAAARADGHAWRARACTILTGIGTVLEDNPRMNVRDVDTPRQPRI-AVVDSKLDIPLDAH 236
Query: 236 --IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ L ++ L DL +L L RG L VE
Sbjct: 237 VLKAPSGCLIYTCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVE 296
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349
G + S I LVD ++ Y++ ++G G + PL+ + G D
Sbjct: 297 AGFKLNGSLIREGLVDELLFYQAPKLLGTGAMGIANFGPLDRLDQGLPLVFHDVARLGPD 356
Query: 350 VCLEYIGK 357
+ + +
Sbjct: 357 LRIVARVQ 364
>gi|89055912|ref|YP_511363.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Jannaschia sp. CCS1]
gi|88865461|gb|ABD56338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Jannaschia sp. CCS1]
Length = 365
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 134/361 (37%), Positives = 189/361 (52%), Gaps = 12/361 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
DAR+M+ AL +G NP+V C++V++G V+GRG TA GG PHAEV AL +AG
Sbjct: 3 DARWMALALSLGARGMGQVWPNPAVGCVLVREGRVVGRGWTARGGRPHAEVVALGQAGAL 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGA AYV+LEPC+H G++ PCA +I+ G+ RVVV +DPD RV+G G+ L G+ V
Sbjct: 63 ARGACAYVSLEPCNHVGQTGPCASALIDAGVARVVVACEDPDPRVAGGGIARLRAAGVEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + H R+V + R +TLK+A S D I A S ITG ++ +VH
Sbjct: 123 VVGVGAAEAERAHTGFFRRVREGRPMLTLKVATSLDGRIATASGESQWITGPDARRRVHG 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+RA+ DA+LVG GT ADDP LT R G P+R+++ + +D + +TA PV
Sbjct: 183 MRARHDAVLVGAGTARADDPSLTVRGFGDVP-QPVRVVVSRRLDVPVDLALGRTARDVPV 241
Query: 246 IIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+V D P A A + D+ L L G+T + EGG A+A
Sbjct: 242 WLVHGPDVPSAARAAWVAAGATLIESALGAGGQLDVGAALQRLGEAGLTRVFCEGGGALA 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
S + + LVD + ++ +VIG G PS L F R + G D +
Sbjct: 302 ASLLTADLVDELAVFSGGLVIGAEGTPSVGAMGLTGLAEAPRFTRERVEGVGPDALSLWT 361
Query: 356 G 356
Sbjct: 362 R 362
>gi|284033021|ref|YP_003382952.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
gi|283812314|gb|ADB34153.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836]
Length = 344
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 109/357 (30%), Positives = 159/357 (44%), Gaps = 27/357 (7%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62
S D +M A+ + +G T NP V C+I +DG G G A G PHAEV AL
Sbjct: 5 SPIDVAWMRRAIELAARGLGSTHPNPVVGCVITGRDGHPAGEGFHAVAGGPHAEVAALRM 64
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARG TAYVTLEPC+H GR+ PCA +IE G+ RV+ V DP+ + +G + S+
Sbjct: 65 AGDRARGGTAYVTLEPCNHTGRTGPCADALIEAGVARVLYAVPDPNRQAAGGADKLRSKN 124
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ ++ +E + H +L R +T K A + D S ITG ++
Sbjct: 125 VHVEQGLLRAEAEAVNHVWLHSVRMGRPFVTWKFATTLDGRSAAPDRSSRWITGEQARAD 184
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ DAI VG TVL DDPELT R + + + + + ++
Sbjct: 185 VHRQRAECDAIAVGTQTVLTDDPELTVRDAQDRPVGRQPLRVVVGDREIPATARVRNDRA 244
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ D ++L L + L +EGG +A +F
Sbjct: 245 ETLL-----------------------LPTHDPAEVLRQLDDHHIRHLWLEGGPTLAAAF 281
Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
+ S LVD I+ Y + V+G G L ++ + F G DV L
Sbjct: 282 LRSGLVDQIVAYVAPAVLGSGFAAIGDLGAESIDHLRRFQLADVTRLGDDVRLTLTP 338
>gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD
(diaminohydroxyphosphoribosylaminopyrimidine deaminase /
[Synechococcus sp. CB0205]
Length = 371
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 180/361 (49%), Gaps = 10/361 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M S++ +M AL+ + G TS NP V C+++ + G ++G G G PHAEV A
Sbjct: 12 MSSSAW-RPWMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHA 70
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AGE A+G TA V+LEPC H+GR+PPC++ +I G+RRVVV + DPD RV+G G+ L
Sbjct: 71 LSQAGERAQGGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQL 130
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + L+ ++V+ R LK A+S D + S I+G
Sbjct: 131 QAAGIEVISGVCEAEAQALNRSFIQRVQTGRPWGILKWAMSLDGRTALPNGASQWISGPP 190
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ VH LRAQ DA+LVG GTV AD+P LT R G + P+R++L L D+++
Sbjct: 191 ARAWVHQLRAQCDAVLVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRSLDLPQDTQLWD 248
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+L +++ + + + + L +L RG +L E GA +
Sbjct: 249 QSLAQTLVLHGSKAPAERQQQLDRLGVEHLALPECQPRAALELLAQRGCNQVLWECGAEL 308
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
A + + V + + ++G +PL E L + + R G+D LE
Sbjct: 309 AAAALREGCVQQLAGVIAPKLLGGLAARTPLGELGLVDVNQAETWPQQRLRRLGNDWLLE 368
Query: 354 Y 354
Sbjct: 369 L 369
>gi|18976434|ref|NP_577791.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
gi|18891968|gb|AAL80186.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638]
Length = 354
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 108/360 (30%), Positives = 166/360 (46%), Gaps = 19/360 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +FM ALR +R GLT+ NP V ++VKD +IG G G HAEV A+E+A +
Sbjct: 3 DEKFMKLALRLARKGEGLTNPNPMVGAVLVKDNKIIGTGWHKRFGDKHAEVNAIEDAKRK 62
Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GAT YVTLEPCSH+G+ PPCA IIE GI RVV+ + DP+ VSGRG++ L + G
Sbjct: 63 GYTIEGATLYVTLEPCSHWGKQPPCADRIIEEGISRVVIAMVDPNPLVSGRGIKKLKEAG 122
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E E K ++ K +++K+A++ D I S IT ++ +
Sbjct: 123 VEVKVGVLEEEAKKLNEIFVKYITTKIPFVSIKLALTLDGFIATQNFKSKWITDEKARGE 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTAL 241
V LR + AI+VG T++ D+P L CR+ G E + + ++
Sbjct: 183 VQKLRRRHMAIMVGANTIIQDNPRLDCRIKGCTEKFKVILDSQGKVADFIKKGHKLRVFE 242
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
VI+ T+ + + ++L L G+ S+L+EGG +A
Sbjct: 243 NGKVIVFTKRPEKFK--------GICEAYPITEPFEILKKLGEIGIDSVLIEGG-RIAGE 293
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
F+ D + L+ + G G P + + F G + +
Sbjct: 294 FL--NFADKLYLFYGPKIFGRGIKPFEILKVRDINEAPKFHIEGIKRVGKSFLVTAYPGD 351
>gi|150396042|ref|YP_001326509.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
gi|150027557|gb|ABR59674.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419]
Length = 398
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 174/390 (44%), Positives = 234/390 (60%), Gaps = 39/390 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM+AALR SR ++G T TNPSV C+IV +G+++GR VTA GG PHAE QAL EAGE+
Sbjct: 8 DERFMAAALRLSRRNLGRTGTNPSVGCVIVNEGMIVGRAVTASGGRPHAETQALAEAGEK 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPCSH+G++PPC +I G+ RVVV + DPD RV+GRG+ L + GI V
Sbjct: 68 ARGATAYVTLEPCSHHGKTPPCTDALIASGVARVVVAILDPDERVAGRGIVLLREAGIAV 127
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + EG+ L AYL RQ +KR H+TLK+AVS D MIG G G V ITG +S+ QV +
Sbjct: 128 DIGVLREEGERALQAYLMRQCKKRPHVTLKLAVSNDGMIGRRGEGQVRITGAVSRAQVQI 187
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA++DAILVGIGT ADDPELT R+ GL++ SP+RI+LD +L ++SK++++A +
Sbjct: 188 LRAETDAILVGIGTASADDPELTVRMQGLEDRSPVRIVLDRRLELPIESKLVRSAGEVSL 247
Query: 246 IIVTENDDPVLALAFRKKNINIIYCD---------------------------------- 271
I+V + +
Sbjct: 248 IVVAGDAGSPSPRMRVEGERRADEGQVSGVSLPLTPTLSPVAGRGGDYEARRDVLVSAGV 307
Query: 272 ----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
++ LL L RG++SLLVEGG++ A +F++ LVD I+L+ IG+GGIPS
Sbjct: 308 EILNADNIPDLLAALASRGISSLLVEGGSSAARAFLDVELVDRILLFTGPSPIGKGGIPS 367
Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
P + + F R +G D+ EY
Sbjct: 368 PFQRRSVPAGFTLQRTARYGDDIFEEYERD 397
>gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella
excrementihominis YIT 11859]
gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella
excrementihominis YIT 11859]
Length = 355
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 112/355 (31%), Positives = 168/355 (47%), Gaps = 11/355 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M AL ++ NP+V C+IVKD +IG G T G HAEV AL +A GE
Sbjct: 1 MRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESV 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPCSHYGR+PPCA + + RVV + DP+ V+G+GL+ L + G+ V+
Sbjct: 61 AGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVE 120
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E + +L RQ E + K+A+S D +A S IT ++ H
Sbjct: 121 CGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R S A+L G+GTVLAD+P++T R P+++++D + L+ D KI + V
Sbjct: 181 RGISGAVLTGLGTVLADNPQMTAR-FEGVTRQPLKVVVDSNLSLNPDLKIFQGGKTLLVC 239
Query: 247 IVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + + I DL+ L+ L R + + VE GA + +
Sbjct: 240 AHYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGALAME 299
Query: 306 RLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L+D ++Y + + +G+G PS ++ G DV L
Sbjct: 300 GLIDEYLIYVAPVFLGDGRRLLDLPSF-KDLCEGVALEFTDIQKVGPDVRLMLRP 353
>gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
sp. CNPT3]
gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
sp. CNPT3]
Length = 381
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 112/372 (30%), Positives = 170/372 (45%), Gaps = 21/372 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D +MS AL ++ ++ NP+V C+IV D IV+G G G HAEV AL
Sbjct: 6 FSEQDKEYMSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYALAM 65
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG +A+ +T YVTLEPCSH+GR+PPCA +I+ G++RV V + DP+ +V+G+G++ L
Sbjct: 66 AGSKAQSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDA 125
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + L+ ++ KR+ +TLK+ S D + S ITG S+
Sbjct: 126 GIEVSVGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRC 185
Query: 182 QVHLLRAQSDAILVGIGTVLADD-------------PELTCRLNGLQEHSPMRIILDPHF 228
V RAQ AIL TVLADD ++ Q P+RIILD
Sbjct: 186 DVQHFRAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRN 245
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-- 286
KL+ KI ++ + D + + D L ++L
Sbjct: 246 KLTGQEKIFSLPGDIILVALQLRHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLNRY 305
Query: 287 -VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCV 341
+ + +E GA +A +F ++LVD ILY++ ++G
Sbjct: 306 ELNDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMGAQARSLVNLDDFSTMDDVLQLTLQ 365
Query: 342 RRDYFGSDVCLE 353
G+D+ +
Sbjct: 366 EVTVIGNDIRII 377
>gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
33386]
gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC
33386]
Length = 363
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 116/365 (31%), Positives = 186/365 (50%), Gaps = 13/365 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M AL + +G + NP V ++VKDG V+G+G G PHAEV AL+EAG+
Sbjct: 1 MDKKYMEMALEIAEKGLGHVNPNPLVGAVVVKDGTVVGKGYHGVYGGPHAEVYALDEAGK 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA YVTLEPCSHYG++PPCA+ IIE GI+R V DP+ VSG+G++ L + I
Sbjct: 61 SAEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIE 120
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + E A+ EK ++ LK A++ D I S I+ ++ +V
Sbjct: 121 VHTGVLKEECDNINKAFFKYIKEKIPYLFLKCAITLDGKIASRNGDSKWISNETAREKVQ 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R + I+VGIGTVL D+P LT R+ +P+RII+DPH K++ + II
Sbjct: 181 FYRNKFMGIMVGIGTVLNDNPRLTARIEN--GVNPLRIIVDPHLKVNTELNIISNNYDKK 238
Query: 245 VIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVA 299
II+T ++ + + IL G + S+L+EGG +
Sbjct: 239 TIIITSENNTGTAKYSELENEFGIKFITLPDYEFSVSDILRELGRAKIDSVLLEGGEKMI 298
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ +L+D ++ S ++G+ S + EK ++ + +G+++ +E+
Sbjct: 299 SKAFSEKLIDGGEIFISDKILGDSSGKSFISGFSTEKISDSIILRNIKYNLYGNNIGVEF 358
Query: 355 IGKNL 359
+ +
Sbjct: 359 ELQEV 363
>gi|116334232|ref|YP_795759.1| pyrimidine reductase, riboflavin biosynthesis [Lactobacillus brevis
ATCC 367]
gi|116099579|gb|ABJ64728.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus brevis ATCC 367]
Length = 356
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 11/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GEEA 67
FM A+ +R G T TNP V + VK G ++ G G HAE+ AL + ++A
Sbjct: 6 FMQQAVIAARRGSGHTWTNPLVGAVFVKHGKILSVGYHHRYGQRHAEIDALAQLQRPQQA 65
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+GAT YVTLEPCSH+G++PPCA +IE G+ RVV+ DP+ V+GRG+ L GI V
Sbjct: 66 QGATLYVTLEPCSHFGKTPPCADRLIEVGVGRVVIGQRDPNPLVAGRGISKLRAAGIPVS 125
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + + + R +T+K A+S D + A +TG + LR
Sbjct: 126 VLDSTTALNPAYNFYYQHH--RPQVTVKYAMSLDGKVNQAEAQRTYLTGAAAMADSQQLR 183
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
Q AIL+G T+ D P LT R E P+R+++ + S+ + A ++
Sbjct: 184 RQQQAILIGERTLTIDHPRLTIRDAITDEPVPIRMVVLHDIEHIDTSQPLFKAPGPIWLL 243
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T L + + + + +G+ +LLVEGG+ + +F+ L
Sbjct: 244 TTHPATCQLPE-----QVRVFTRTTWSPAAITALCYQQGIQALLVEGGSHLQAAFVRDDL 298
Query: 308 VDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
D +++Y S ++IG G+P+ ++ ++ G+DV L + C QE
Sbjct: 299 ADQLVIYLSPLLIGGAGLPAVYAPDWPSPKRAYIPPVTTLLGNDVKLTTRRQRKCSQE 356
>gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans
C54]
Length = 386
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 114/370 (30%), Positives = 177/370 (47%), Gaps = 13/370 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
S D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV AL +A
Sbjct: 8 SDDLSWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALRDAQ 67
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL L Q
Sbjct: 68 ARGESVAGATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLARLRQ 127
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E + L+A ++ + LK+A S D + S ITG ++
Sbjct: 128 AGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGPEAR 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
HL RA+S +L GIGTVL DDP+LT R + P R ++D F++ D++ +
Sbjct: 188 ADGHLWRARSCVVLTGIGTVLKDDPQLTVR-SVQTPRQPRRAVVDGRFEIPEDAR-LFDG 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGGAA 297
V + L R + + D L + L + + VE GA
Sbjct: 246 GEVIVFTARVDAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHVEAGAG 305
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
++ + + + VD +++Y + +++G+ LE + + +D+ +
Sbjct: 306 LSGALVAAGCVDELLIYMAPMLLGDAAGVVRLPLLERLDAAPRYEFIEAQRVAADLRVRA 365
Query: 355 IGKNLCLQEL 364
+ L
Sbjct: 366 RVPEH-WRGL 374
>gi|300022486|ref|YP_003755097.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524307|gb|ADJ22776.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans
ATCC 51888]
Length = 368
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 138/362 (38%), Positives = 191/362 (52%), Gaps = 10/362 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALE 61
S+FD M+ ALR + +G T NPSV +I + G ++ RGVTA GG PHAE QA+
Sbjct: 7 SAFDEEMMAIALRMAERGLGATMPNPSVGAVIADETTGEILARGVTAPGGRPHAETQAIA 66
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG+ RGAT YVTLEPCSH+GR+ PCA+ I+ G++R VV ++DPD RVSGRGL L
Sbjct: 67 AAGDRVRGATIYVTLEPCSHHGRTGPCAEAIVAAGLKRAVVAIEDPDPRVSGRGLDKLRD 126
Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFIS 179
G +V + +E + ++ R E+R T+K+A+ I + +T ++
Sbjct: 127 AGLEVVRGVGAAEARRITRGHIVRITERRPFTTVKLALDGSGEIARGNGVSPIWVTAEMA 186
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ LLRA DAILVG TV DDPELTCRL GL + SP RIIL + +K++++
Sbjct: 187 RAHGMLLRAHYDAILVGSATVRDDDPELTCRLPGLIDRSPARIILSRSLDIPAGAKLVRS 246
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEG 294
A P ++T D + I+ L ++ LVGRGVT LLVEG
Sbjct: 247 ASGVPTWMMTAPDSDPQKREQLTSHGVEIHDIPIVGQSLWLPAIMEALVGRGVTRLLVEG 306
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G + SF + LVD +ILY + + G+ +E V R G D
Sbjct: 307 GPRIWRSFAEASLVDEVILYMAGMP-GDDVAMDAIERQLGPVALSLVDRRTMGGDTMWRL 365
Query: 355 IG 356
Sbjct: 366 HR 367
>gi|330466988|ref|YP_004404731.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
AB-18-032]
gi|328809959|gb|AEB44131.1| riboflavin biosynthesis protein ribd [Verrucosispora maris
AB-18-032]
Length = 353
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 113/366 (30%), Positives = 171/366 (46%), Gaps = 24/366 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A
Sbjct: 1 MASVSVDEA-MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVA 59
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L +AG A+G TA VTLEPC H GR+ PC+ +++ + RVV+ V DP V+ G L
Sbjct: 60 LAQAGHRAKGGTAVVTLEPCDHTGRTGPCSDALVQAQVARVVIAVPDPTP-VAAGGAATL 118
Query: 120 SQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI VD + + + T ++ K A + D A S+ IT
Sbjct: 119 RAAGIRVDLGVRATEAENGNVAWLTAMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSK 235
++ VH LRA DA++VG+GTVLADDP LT R P+R+++D + LD++
Sbjct: 179 ARMDVHALRATVDAVIVGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGRTPLDAQ 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
I A + E DL LL L +GV ++L+EGG
Sbjct: 239 IRDAAARTWIATAAEVG--------------AGPDGGVDLPALLAALHAKGVRAVLLEGG 284
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A +F+ + LVD ++ Y + ++G G + + + G D+ +
Sbjct: 285 PKLAGAFLAAGLVDRVVGYLAPRLLGAGPAALVDAGVTTIAEAIDLEITDVTQIGPDLRI 344
Query: 353 EYIGKN 358
+ +
Sbjct: 345 TALPRK 350
>gi|282889950|ref|ZP_06298485.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500143|gb|EFB42427.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 359
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 115/358 (32%), Positives = 171/358 (47%), Gaps = 13/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL + L+ NP V +IVK G ++G G T G HAE+ AL +A +A +
Sbjct: 1 MDRALALATQARLLSPPNPWVGAVIVKQGKIVGEGFTQAPGEAHAEIMALRQALHQAENS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPCSH+G++PPC II+ I VV+ ++DPD +VSGRG+Q L + GI V +
Sbjct: 61 TLYVTLEPCSHFGKTPPCVNAIIQAKIAHVVIALEDPDPQVSGRGIQKLKEAGISVTVGV 120
Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + L YL ++ R K A+S D + + S IT +S+ LRA+
Sbjct: 121 EQQRATELLEPYLFQRKTGRPFCVAKAAISLDGRVAASDHTSKWITNELSRQDAQRLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
S AIL+G GT D P LT R + P+R++LD L+ S + LAP I+
Sbjct: 181 SQAILIGSGTAKYDHPRLTVRSFSPLPYQAPLRVVLDSRGTLTDLSSPLFNTNLAPTCIL 240
Query: 249 TENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRGVTSLLVEGGAAVAHS 301
T + + + + DL +++ L +G+ +L+EGGA +
Sbjct: 241 TTDRCSTEIRDMWQSHGIESIILSQAKNGEGVDLNEVMKTLGKKGILQVLIEGGATLLGQ 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYI 355
F++ +L+ ++ LY V+G GIP F V L Y
Sbjct: 301 FMHEQLIQTLHLYIGPKVLGCDGIPLFGSFSPQTLINAPQFQLKETKRLDDCVYLHYR 358
>gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
34H]
gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
34H]
Length = 389
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 113/382 (29%), Positives = 178/382 (46%), Gaps = 39/382 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDG--IVIGRGVTAYGGCPHAEVQALEEAGEE 66
MS A+ ++ TS NP V C++V K+G VIG G G HAEV AL EA
Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60
Query: 67 ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+GATAYVTLEPCSH+GR+PPCA+ +++ G+ V+ + DP+ +VSG GL L +
Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E ++ ++ + V ++ K+A S D MA S IT ++
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL----------NGLQEHSPMRIILDPHFKLS 231
V LRAQS AI+ G +VL D+ ++T R P+RI++D +L+
Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----------------CRDL 275
+ + + +I + D + +N+ +L
Sbjct: 241 PNLALFEHQSPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKINL 300
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEE 331
K LL L RG+ +L+E GA ++ +FI LV+ +ILY++ ++G G + +
Sbjct: 301 KALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDGKNLMEMPSVSK 360
Query: 332 GYLEKNFMCVRRDYFGSDVCLE 353
K G D+ +
Sbjct: 361 LNQAKALTISDIRMVGVDIRIT 382
>gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM
4136]
Length = 354
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 156/360 (43%), Gaps = 32/360 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
D ++M AL +R +GLTS NP+V ++V +G +IG+G G PHAEV+AL A
Sbjct: 4 PEDEKWMRLALAEARRGIGLTSPNPAVGAVLVNEGRLIGQGWHHRVGQPHAEVEALRNAE 63
Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
G E RGATAYVTLEPCS +GR+ C + + G+ RVV DP+ +G + L
Sbjct: 64 ANGHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLL 123
Query: 120 SQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V ++ E + L + ++ K S D + S IT +
Sbjct: 124 QEAGIAVLSGVLREECEEVLRPFAKWITTGLPYVVAKAGQSLDGRLTRPPGESQWITSEV 183
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPE--LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ LR QSDAIL+G T+ D+P L + P R+++ L + +
Sbjct: 184 SRAHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPEGKIQPWRVVVTRGGDLPRGANL 243
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+++ R ++L L RG+TSLL+E G
Sbjct: 244 FNDEFKERTLVLEG---------------------ERCFPEILQELAARGITSLLLESGG 282
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + VD + Y + + G G + G R + GSDVC+
Sbjct: 283 NLLGQAFAAGAVDEVCWYIAPRICGGGTMAVGGLDFALGAKSVELEKARVEVLGSDVCVR 342
>gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces
bingchenggensis BCW-1]
Length = 378
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 170/358 (47%), Gaps = 12/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I+ DG G G G PHAEV AL AGE ARG
Sbjct: 10 MRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALRAAGERARG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + +G + + +
Sbjct: 70 GTAVVTLEPCNHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAAGTAVESGL 129
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + A+LT R + K A + D A S IT S+ VH LRA+
Sbjct: 130 LADQAAAVNEAWLTSMRFGRPFVLWKYAATLDGRSAAADGTSRWITSAESRADVHRLRAE 189
Query: 190 SDAILVGIGTVLADDPELTCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
SDA++VG GT+ ADDP L R P+R++LD ++ D++++
Sbjct: 190 SDAVVVGSGTLRADDPHLAVRGASGSNGASGSNGARQPLRVVLDSKATIAPDARVLDGTA 249
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + LA A + I D+ LL L GRG+ S+L+EGG +A +
Sbjct: 250 PTLIAVAEDAPAVRLAGAETVRLPRAISGPGLDIPALLGELHGRGIRSVLLEGGPTLAGA 309
Query: 302 FINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ +R VD ++ Y + ++G G + + G D+ + +
Sbjct: 310 FLAARAVDKVVGYLAPALLGAGAPALADAGITTITQALRLELTDVTRLGPDLRITAVP 367
>gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
Length = 367
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 184/367 (50%), Gaps = 11/367 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A A+GATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L
Sbjct: 62 AQAAAKGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R R I LK A S D ++ S ITG ++
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAARE 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P+L R P RI+LD ++ LD ++
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVRSFP-TLRQPARIVLDSRLQIPLDCHLVTDTD 240
Query: 242 LAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
VI+ +D+ R + +L L+ L G +L E G+
Sbjct: 241 SPTVIVTLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +F+ LVD I+LY++ ++G G +P + ++ + G D+
Sbjct: 301 TLVSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWLSQSVEIIGQDIKW 360
Query: 353 EYIGKNL 359
K++
Sbjct: 361 VLRKKSV 367
>gi|327538743|gb|EGF25393.1| riboflavin biosynthesis protein RibD [Rhodopirellula baltica WH47]
Length = 394
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 119/383 (31%), Positives = 182/383 (47%), Gaps = 31/383 (8%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ A+ + G NP V C++V+D + IG+G G PHAEV+AL +
Sbjct: 13 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCVLVRDSVCIGKGYHQRFGGPHAEVEAL-SS 71
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G
Sbjct: 72 CDDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 131
Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E + L AYL R + K A+S D I S ITG S+
Sbjct: 132 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 191
Query: 183 VHLLRAQSDAILVGIGTVLADDP-------------ELTCRLNGLQEHSPMRIILDPHFK 229
VH LRA DAI VG+GTV+AD+P + + +R++
Sbjct: 192 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTNTEDRSNQLVRLVYSRSRL 251
Query: 230 LSLDSKIIKTALLAPVIIVTENDD---------PVLALAFRKKNINIIYCDCRDLKKLLT 280
L S++++TA P ++ ++ ++ + I + L L +
Sbjct: 252 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 311
Query: 281 ILVGRG--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
RG +T L+VEGG+ + SF + +D + + + IG P PL + ++
Sbjct: 312 KDNPRGLEMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGSCIGGRSAPGPLGDPGIKALS 371
Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356
+ R D F +DV L Y
Sbjct: 372 DATSLRMSRVDSFDNDVRLIYRR 394
>gi|239637909|ref|ZP_04678870.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
L37603]
gi|239596472|gb|EEQ79008.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri
L37603]
Length = 347
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 162/354 (45%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA
Sbjct: 3 KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAN 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G L GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGIHKVIYAVKDTT--LISKGDDILKNAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + T + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKEVKKDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DA+L G TV ADDP T R+ P+R+IL KL + ++ I
Sbjct: 181 SHDAVLTGRKTVEADDPLYTTRIAD--GKHPIRVILSKSGKLDFNQQLFHDYASPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L N+ IIY + D+K +L L +G+ LLVE G + F+ S +
Sbjct: 239 EN-----KNLKVDNSNVTIIYMEQCDIKSILKDLYQKGIGKLLVEAGPEITSEFLQSDHL 293
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
D ++LY + +IG G + + F V ++ L K
Sbjct: 294 DHLVLYFAPKIIGGSGKYQFFQTDQIVSLPDTTQFEIVNSTLIQQNIKLVLRKK 347
>gi|118587985|ref|ZP_01545395.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
gi|118439607|gb|EAV46238.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614]
Length = 374
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 166/372 (44%), Positives = 226/372 (60%), Gaps = 15/372 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGVTAYGGCPHA 55
M +S+ DARFM+AA R +R +G NPSVA LIV+ DG +V GRGVT+ G HA
Sbjct: 1 MSELSNLDARFMAAAERLTRRGLGRVWPNPSVAALIVRFEDGAAVVAGRGVTSRPGMAHA 60
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL +AGE+A+GAT YVTLEPCSHYGR+PPCA+ +IE G++RVVV + DP+ RV+GRG
Sbjct: 61 EVNALNQAGEKAQGATCYVTLEPCSHYGRTPPCAKALIEAGVKRVVVGMLDPNPRVAGRG 120
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L + GI V + + L+ T + ++R + LK+AVS+D IG AG G V I
Sbjct: 121 VGMLREAGIEVVVGVREKAMQALYRGFTYRQLKQRPVVFLKLAVSRDGFIGRAGEGQVKI 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+G +S +VH RA+ DAILVG GT LADDP+LTCRL GL + SP+R+I+D +LSL S
Sbjct: 181 SGPLSMRKVHGYRAECDAILVGSGTALADDPQLTCRLPGLADRSPVRVIIDRCARLSLTS 240
Query: 235 KIIKTALLAPVIIVTEN-----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
K+++T + PV +V N LA A +L+ L RG+T
Sbjct: 241 KLVQTCVDVPVWLVCSNTADADKIADLAAAGVNVIRVPAEETGIKPSVILSALATRGITR 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345
++VEGG+ +A SF+ + LVD + + IVIGEGGIP+ L + F V
Sbjct: 301 VMVEGGSRLASSFLAADLVDDLCVVTGDIVIGEGGIPALHGLDLADVLKNPKFERVDAGR 360
Query: 346 FGSDVCLEYIGK 357
FG D + +
Sbjct: 361 FGPDSFVYLRRR 372
>gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
17093]
gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM
17093]
Length = 393
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 107/366 (29%), Positives = 154/366 (42%), Gaps = 14/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ R+MS AL + G T+ NP V C+IV+D +IG G G HAEV+AL++A
Sbjct: 10 AEHERYMSRALELAERGRGSTAPNPMVGCVIVRDDEIIGEGWHERAGEAHAEVRALQDAR 69
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G RGAT YVTLEPC+H GR+PPC + I+E G+RRVV+ DPD RV G G+ L
Sbjct: 70 SRGARVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQA 129
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + + + R + K A++ D I S ITG ++
Sbjct: 130 AGVEVVTGVLAAEAEAQNEVFRTVHLRGRPWVLYKTAMTLDGKIATRTGRSRWITGPAAR 189
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM------RIILDPHFKLSLDS 234
+V RA A+ VG+ TVL DDP LTCR+ G + R
Sbjct: 190 ERVQRWRAHLSAVAVGVNTVLLDDPLLTCRVPGGHTPHKVVFDTVARTPPTAQLFHPDPQ 249
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
L L + + D++ L L GV +LL+EG
Sbjct: 250 GEAARVTLFVTERAPAARVAALRYRGAEVVVLPETRGRADVRSALAHLKEVGVQTLLLEG 309
Query: 295 GAAVAHSFINSRLVDSIILYRSQI----VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
G +A SF + VD + ++ + E + + G D+
Sbjct: 310 GGTLAWSFFEVQAVDRVAVFIGPKLLGGGGASPLGGLGVTEMERAITLSGLTTEEVGGDL 369
Query: 351 CLEYIG 356
+
Sbjct: 370 LVTGRV 375
>gi|319784162|ref|YP_004143638.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170050|gb|ADV13588.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 371
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 159/370 (42%), Positives = 213/370 (57%), Gaps = 13/370 (3%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCP 53
M S D RFM+AALR SR + G T+TNPSV LIV+D +++G GVTA GG P
Sbjct: 1 MTASEQAALDRRFMAAALRLSRKNAGRTATNPSVGTLIVRDDGNGPMIVGTGVTAVGGRP 60
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAE +AL EAG+ ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG
Sbjct: 61 HAETEALAEAGDLARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGAASDPDSRVSG 120
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSV 172
+G L G+ V + + A + KR + LK+A+S D IG G G V
Sbjct: 121 KGYAILRAAGVEVVEKVLAAEAAEQMAGYLIRSLRKRPEVILKLALSSDGKIGREGDGQV 180
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
ITG I++ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L
Sbjct: 181 SITGDIARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPE 240
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGV 287
SK++ P+ I + L A ++ +LL L G+
Sbjct: 241 ASKLVSGVDRVPLYIAACLEADPLRRAALERAGVRFIGTETHEGGVALPELLEDLAALGM 300
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
S+LVEGGA VA +F+ LVD I+L++ IG+ GI SP++ ++ F +R FG
Sbjct: 301 ASVLVEGGARVASAFLADGLVDRIVLFQGPDAIGDDGIASPVDADHIPAGFRKLRDMRFG 360
Query: 348 SDVCLEYIGK 357
D E+I
Sbjct: 361 EDSYAEWIRD 370
>gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
desulfuricans SSM1]
gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter
desulfuricans SSM1]
Length = 384
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 110/358 (30%), Positives = 180/358 (50%), Gaps = 11/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M ++ + G T TNP V +IVKDG +IGRG G HAE+ A+ +A E GA
Sbjct: 8 MKECVQLALLGKGYTKTNPIVGAIIVKDGKIIGRGYHEEYGKSHAEINAMNDAVEPLEGA 67
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCS +G++PPC IIE I+RV + V DP+ +++G+G+ L + G+ V
Sbjct: 68 DLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVGF 127
Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + + + + + TLK+A S D I S IT S+ VH +R+
Sbjct: 128 DEELCASIIEDFTKGVLNQEPYYTLKLAQSLDGKIATKTGDSKWITSESSRVYVHYIRSV 187
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SDAILVG+ TV D+P L RL E +P +++LDP F++ +S + K ++ V
Sbjct: 188 SDAILVGVNTVNRDNPRLDVRLIK-AEVNPYKVVLDPFFEIDTNSFLCKNYSNKLILFVK 246
Query: 250 ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + + I+ + DL + L + + ++L+EGG+ A FI++
Sbjct: 247 DIKSKEKYDKLISEGVEIVKDESIGELFDLNFISKYLYSKNILNVLIEGGSETAGRFIDA 306
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
VD ++ + + +IG S ++ +EK +F +D+ + K+
Sbjct: 307 GKVDKVLFFIAPKIIGGRDAVSSIKGDGVEKIQDAIEVKMAEVKHFDNDILISGKIKD 364
>gi|241888469|ref|ZP_04775779.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
10379]
gi|241864861|gb|EER69233.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC
10379]
Length = 356
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 103/363 (28%), Positives = 150/363 (41%), Gaps = 12/363 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
FM AL ++ T TNP V +IVKD +I RG GC HAE A+
Sbjct: 1 MHEYFMKLALLEAKRGTKYTHTNPIVGAIIVKDDEIIARGSHLRYGCEHAEKNAISTCET 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC I+E GI +VVV DP+ VSG+G+++L G
Sbjct: 61 PEKLFNSTLYVTLEPCNHKGKQPPCTDTIVEMGISKVVVAQLDPNPLVSGKGIKYLQDNG 120
Query: 124 IIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + L+ EKR ++ LK A S D + + +
Sbjct: 121 IEVITGVLEKEAYNLNYAYNLFHSEKRPYVVLKQATSLDGKLAFTNKRTQITGK-DVYDF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V R AILVG TVL D+P+LT L + D L
Sbjct: 180 VRNERDNYQAILVGARTVLTDNPKLTGANTSLFPPKRIV------LDADGDIFEHNNLNL 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ ++ II +K++L+ + G+ S+ VEGG + F
Sbjct: 234 FNNSLSEVIVFTKQKCKNLPSHVTIITPKEFSIKEILSEVAKLGIQSVYVEGGPNIHDQF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR--DYFGSDVCLEYIGKNLC 360
+ S D +I Y S I++G S + G D+ + + C
Sbjct: 294 LASGYWDEVITYISPILLGGNNTSSFTSNRITNEKIQLHDTKITKLGEDIRVSGRRVSQC 353
Query: 361 LQE 363
LQ+
Sbjct: 354 LQD 356
>gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rubrivivax benzoatilyticus JA2]
gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rubrivivax benzoatilyticus JA2]
Length = 370
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 118/368 (32%), Positives = 171/368 (46%), Gaps = 13/368 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQA 59
MP++ D + AL + +GLT NP V C+I DG V+GRG T G HAEV A
Sbjct: 1 MPLAPLDRTRLLEALALAEGSIGLTDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMA 60
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L +A G + RGATA+VTLEPC+H+GR+PPC ++ GI RVVV V DP +V+G G+
Sbjct: 61 LRDAAAAGHDTRGATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGI 120
Query: 117 QWLSQKGIIVDRMMESEG---KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
L G+ V+ E + + +R R + +KIA S D + S
Sbjct: 121 TRLRAAGVQVELGDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQW 180
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
ITG ++ H R ++ +L GIGTVL DDP L R PMR ++D +L
Sbjct: 181 ITGEAARTDGHAWRRRAGCVLTGIGTVLDDDPRLDVRRVPTVLQ-PMRAVMDSGLRLPAG 239
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLL 291
++++ V AL + D +L L GV L
Sbjct: 240 ARVLAPPGRCLVFHAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNELH 299
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGS 348
VE GA + + + + LVD +++Y + +++GEG P E + V G
Sbjct: 300 VEAGARLNGALLAAGLVDELLVYTAPLLLGEGRPMAALGPFETLAQGHRYGFVDATPVGE 359
Query: 349 DVCLEYIG 356
D+ L
Sbjct: 360 DLRLRLRR 367
>gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Prosthecochloris vibrioformis DSM 265]
gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
phaeovibrioides DSM 265]
Length = 357
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 120/356 (33%), Positives = 175/356 (49%), Gaps = 13/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M L +R G S NP V +IV DG V+G G G PHAEV A+ G+ R
Sbjct: 1 MVRCLELARQGAGAVSPNPMVGSVIVCDGEVVGEGYHEAFGGPHAEVNAIASVGDGAVLR 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127
+T YV LEPCSH+G++PPCA IIE GIRRVV+ DP+ +V+GRG+ L G+ V +
Sbjct: 61 RSTLYVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEVLE 120
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
++E+E K A++T E R + LK+A + D I A S ITG ++ +VH LR
Sbjct: 121 GVLEAESKRLNEAFMTSHAEGRPFVALKLAETLDGRIATADGQSKWITGDAARLEVHRLR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
DA+L G T+ AD LT R +P+R++LDP LS D+ + +
Sbjct: 181 CSYDAVLSGAATIRADGSRLTVRHCA--GRNPLRVVLDPSLSLSPDAPVFGDEAKTLLFA 238
Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ AL + + +++ + DL+ +L L R V S+LVE G ++ S
Sbjct: 239 SQSMEGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHRRQVLSVLVESGGRLSASLA 298
Query: 304 NSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
RL+D + ++ + + G P + F G DV LE
Sbjct: 299 RERLLDKLYMFIAPKLFGGDALASFAPLGVSSPDEAPAFRFEPPRLVGEDVLLEAY 354
>gi|330685448|gb|EGG97103.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
VCU121]
Length = 347
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA+
Sbjct: 3 KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YV+LEPC+H+G +PPC IIE GI++V+ V D + +G L GI V+
Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGIQKVIYAVKDTT--LISKGDDILKNAGIEVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + T + +T+K++ S D S IT K V+ LR
Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKDVKKDVYQLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DA+L G T+ ADDP T R+ P+R+IL KL ++ I
Sbjct: 181 SHDAVLTGRKTIEADDPLYTTRIAD--GKHPIRVILSKSGKLDFGQQLFHDNASPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L N+ IIY + ++K +L L +G+ LLVE G + F+ S +
Sbjct: 239 EN-----KNLTVDNSNVTIIYMEQCEIKSILKDLYHKGIGKLLVEAGPEITSEFLQSDHL 293
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
D ++LY + +IG G + + F V ++ L K
Sbjct: 294 DHLVLYFAPKIIGGSGKNQFFQTDQIISLPDTTQFEIVNSTLIHQNIKLVLRKK 347
>gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus
ATCC 23779]
Length = 371
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 113/348 (32%), Positives = 165/348 (47%), Gaps = 14/348 (4%)
Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G TS NP+V ++V+ G ++GRG T G HAEV AL EAGE+ARGA+ YVTLEPC+ +
Sbjct: 22 GRTSPNPAVGAVVVQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTIW 81
Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
GR+PPC II GI V++ DP+ R L GI V E E
Sbjct: 82 GRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTEA 141
Query: 143 TRQVE--KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R K+ +T+K A+S D I + I+G S+ +VH LR Q+DAILVGI TV
Sbjct: 142 FRHWIVTKQPFVTVKYAMSLDGKIATRTGDARWISGPASRQKVHELRDQTDAILVGINTV 201
Query: 201 LADDP--ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LADDP + P+R++LD ++ + ++ A+ II T
Sbjct: 202 LADDPLLTTRLEQHWRPVQHPVRVVLDARGRMPASAAMLADAVPGSTIIATTAAASAAWR 261
Query: 259 AFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
A + LL L RG++SL+VEGG +F+ ++ V + +
Sbjct: 262 ASLNNAEILELPSNLEGRVSIPALLNELGQRGISSLMVEGGGETIAAFLAAQAVQKVQVV 321
Query: 315 RSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357
+ +IG PSP+ + + + + G+D+ L
Sbjct: 322 IAPKIIGGVA-PSPVAGVGIARMSEAQLWQVRSSEQIGADIWLTAYPN 368
>gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
19624]
gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
19624]
Length = 377
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 103/362 (28%), Positives = 166/362 (45%), Gaps = 21/362 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M AL + + LTS NP V C+IV +G ++G G T G PHAEV AL +A G +
Sbjct: 7 MQRALALAEQGLYLTSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHD 66
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATAYVTLEPC+H GR+ PC + + GI +VV ++DP+ +V+G+G L G++V
Sbjct: 67 VRGATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVV 126
Query: 127 DRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + + +R + +KIA S D + S IT ++ H
Sbjct: 127 EVGPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHA 186
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-- 243
RA++ AIL G+GTV D+P L RL + +++D + + + +
Sbjct: 187 WRARACAILTGMGTVREDNPRLDVRLVETPRQPRL-VVVDSRLETPPTAALFEPHRDTAP 245
Query: 244 -----PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVE 293
PV+I D A + + +++ K L + R + L VE
Sbjct: 246 GREAQPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREINELHVE 305
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350
G + S + LVD +++Y + ++G G + PL G D+
Sbjct: 306 AGHQLNGSLLREGLVDELLIYLAPKLLGAGRGMAQIGPLNTLTDAVTLDYREITQVGPDL 365
Query: 351 CL 352
+
Sbjct: 366 RV 367
>gi|185535483|gb|ACC77864.1| riboflavin biosynthesis protein [Staphylococcus xylosus]
Length = 347
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 165/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+++ A++ ++ G T NP V ++V DG ++G G G HAEVQAL+ A + AR
Sbjct: 3 HYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNAR 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T Y++LEPC+HYG +PPC IIE GI++VV V D + G L Q GI V
Sbjct: 63 GGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAVKDTTLPSE--GDDILEQAGIEVIF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+S+ + + + E +T+K++ S D S IT KN V LR
Sbjct: 121 RSQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA+L G GT+ AD+P+ T R+ P+++IL ++ + I + I
Sbjct: 181 KHDAVLTGRGTIHADNPQYTTRIEE--GKHPIKVILSKTGEIDFNLDIFQLRNEPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L +++ II ++ +L L RG+ S+LVE G V F+ S+
Sbjct: 239 QN-----KNLKTNIEHVEIIALTDCSIENILKDLYQRGIGSVLVEAGPTVTSEFLESKFT 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +ILY + +IG G + F V ++ LE K
Sbjct: 294 NELILYYAPKIIGGSGNYQFFQSESIFNLSEVPQFEIVNSQMLEQNIKLELRKK 347
>gi|71066695|ref|YP_265422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychrobacter arcticus 273-4]
gi|71039680|gb|AAZ19988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychrobacter arcticus 273-4]
Length = 351
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 29/361 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM A+ ++ + T NP+V C+IV+ V+G+G G PHAEV AL++AG
Sbjct: 10 AKDRYFMMLAIEQAKLGLYSTRPNPAVGCVIVQAEEVVGQGFHPKVGQPHAEVFALKDAG 69
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q GI
Sbjct: 70 IRAVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVRLLEQAGI 129
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L+ + ++ LKIA S D MA S ITG ++ V
Sbjct: 130 EVTVGILTAQAEVLNKGFLKAMRTQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDV 189
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
LRAQS AI+ G TV+ D+P+L R + Q P +ILD +L + +
Sbjct: 190 QKLRAQSGAIITGSETVIVDNPQLNVRSSQLGIAPEQVPHPKVVILDRRERLQYNLQSDY 249
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
I+ +D + L ++ +L+E GA+V
Sbjct: 250 QLCRRTDILYWRDD--------------------NLTELLKVLVSEYQCYDVLIEAGASV 289
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEYI 355
A SF+ +LVD +I+Y++ ++G+ + F R + GSD+ L +
Sbjct: 290 AGSFLQQQLVDELIVYQAPCLLGQQARSMVDINPLSLAQQLRFDIKRYEQLGSDMKLTLM 349
Query: 356 G 356
Sbjct: 350 P 350
>gi|124026389|ref|YP_001015504.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL1A]
gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. NATL1A]
Length = 350
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 105/352 (29%), Positives = 171/352 (48%), Gaps = 10/352 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M +++ + G TS NP V +++ +G ++G G G PHAE++AL +AG+++
Sbjct: 1 MRRSIQLALLAEGRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLD 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC H G +PPC + II+ G+++VVV + DPD RVSG G+ L G+ V
Sbjct: 61 GTIVVTLEPCCHQGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIEG 120
Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E + + R R LK A+S D IG+ S IT +++ VH +R+
Sbjct: 121 VLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARDSVHRIRS 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++VG GTV AD+P LT R E P+R++ L +K+ T + A ++
Sbjct: 181 KCDAVIVGGGTVRADNPLLTSRGKSDFE--PLRVVFSRTLNLPQSAKLWDTKI-ARTLVA 237
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + + + + +LL+ L +G +L E G +A S I + V
Sbjct: 238 YGPEGDESFFSDLLDGPEKLRLNSDNPSELLSSLAKKGCNKILWECGPQLATSAIEANCV 297
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355
++++ + ++G SPL E D G D+C I
Sbjct: 298 QELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGEDICWRLI 349
>gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense Y51]
gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense Y51]
Length = 372
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 128/360 (35%), Positives = 187/360 (51%), Gaps = 14/360 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +MS AL + +G TS NP V C+IVKDG+++G G G PHAEV AL+ AG
Sbjct: 9 ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGVIVGEGYHQKAGTPHAEVHALQAAG 68
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ VSG+G+ L GI
Sbjct: 69 EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGI 128
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD E E + +L + K A++ D I S ++ S+ V
Sbjct: 129 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVSNEASRAYV 188
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR D I+VG TV D+P L CR++ P+R+++D ++ L + ++ ++ A
Sbjct: 189 HRLRDHFDVIMVGSETVRQDNPALNCRIDE--GRDPVRLLVDGALQIPLQAAVLASSCTA 246
Query: 244 PVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P +I T P+ L + LK LL LV RG S+L+EGG +
Sbjct: 247 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 306
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-----SDVCLE 353
A S + ++L+D + + +IG G PSPL L + ++ D+ +
Sbjct: 307 AGSLLRAQLIDEVEFIYAPKLIGGKG-PSPLSGLELPLMAQAIPLEFLEIDGGTGDLRVR 365
>gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Coprococcus catus GD/7]
Length = 371
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 128/372 (34%), Positives = 191/372 (51%), Gaps = 16/372 (4%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + D R+M AL ++ G T+ NP V +IVKDG VI +G G HAEV+A
Sbjct: 1 MTDRNQEDLRYMQMALDMAKLGRGYTNPNPMVGAVIVKDGQVIAKGYHHCCGQGHAEVEA 60
Query: 60 LEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++AG ++ GAT YVTLEPCSHYG++PPCA IIE I RVVV DP+ V+GRG++
Sbjct: 61 FKDAGNQDVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEK 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGF 177
+ GI V + +E I L+ + + + L K A+S D I S I+
Sbjct: 121 IRNAGIEVTTGVLAEESIKLNEIFMKYIVNKEPFVLYKSAMSLDGKIATVSGESQWISCE 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S+ +VH LR Q AI+VG TVL DDP L CRL P+R+++D ++ + ++++
Sbjct: 181 ASRKEVHELRHQYMAIMVGSQTVLDDDPMLNCRLIE--GKDPIRVVVDSSLRIPMTARLV 238
Query: 238 KTALLAPVIIVT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
KTA I+ E L A + DLKKL L + S+L+
Sbjct: 239 KTARDIRTIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKKLTEELGRMQIDSILL 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347
EGGAA+A + + ++D + +Y + +IG +P+ +E + G
Sbjct: 299 EGGAALAAAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEHLSDAWQLKDITARNIG 358
Query: 348 SDVCLE-YIGKN 358
+D+C+ YI +
Sbjct: 359 NDICITGYIRRE 370
>gi|254516856|ref|ZP_05128914.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
gi|219674361|gb|EED30729.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3]
Length = 365
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 119/358 (33%), Positives = 182/358 (50%), Gaps = 12/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR + NP V C++V+D ++G G T G HAEV AL+ AG+ AR
Sbjct: 1 MARALRLAERGKYWARPNPHVGCVLVRDSGIVGEGFTQPAGGDHAEVVALKSAGDAARDC 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TAYVTLEPC+H GR+PPC+Q +IE G+ RVVV + DP+ +V G GL+ L+ GI V
Sbjct: 61 TAYVTLEPCAHVGRTPPCSQALIEAGVARVVVGLKDPNPKVDGGGLRDLAAAGIEVSEGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
M ++ ++ L +L RQ R + +K+A+S D MA S ITG ++ V LRA+
Sbjct: 121 MAAQVELQLAGFLARQRRGRPRLRIKLAMSLDGRTAMASGESQWITGADARRDVQKLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGL-------QEHSPMRIILDPHFKLSLDSKIIKTALL 242
S AIL GIGTVLADD LT R + +R++ D + D+ +++ A
Sbjct: 181 SCAILTGIGTVLADDCALTVRDAFFDEELLPPPQRRAIRVVADTRLRTPPDAAVLQGAQP 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ ++ + P +L + + D ++L+ L R +L+E G +A +
Sbjct: 241 SLLLHANDAVCPG-SLTGAARLALPSPAEGLDPAQILSALADRECNEILLESGPTLAGAM 299
Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ S L D +I+Y + +++G P P V R G D + +
Sbjct: 300 LQSGLADQLIVYMAPVLLGSRARPLMELPFNRMAEALRLRLVDRRQMGVDQRFVFEPR 357
>gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311]
Length = 365
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 111/350 (31%), Positives = 171/350 (48%), Gaps = 13/350 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G TS NP V +++ G ++G G A G HAEV AL +AG A+
Sbjct: 11 WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H GR+PPC++ +I+ GI+RVVV + DPD RV+G G+Q L G+ V
Sbjct: 71 GGTIIVTLEPCCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEVIT 130
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E+E A++ R R LK A+S D + S I+ ++ VH LR
Sbjct: 131 GVLEAEAAHQNRAFIHRVQTGRPWGLLKWAMSLDGRTALPNGESQWISAPPARGWVHQLR 190
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A DA++VG GTV AD+P LT R G++ P+R++L L +++ T L + ++
Sbjct: 191 AGCDAVIVGGGTVRADNPLLTSR--GVRAPEPLRVVLSRSLDLPPQAQLWDTTLASTLL- 247
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
P A + + + LL L RG +L E G ++A +
Sbjct: 248 ---AHGPGCADRPLPEGPERLELLASEPLDLLHALAPRGCNRVLWECGPSLAAQAVKQGC 304
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
V + + + ++G +PL E + ++ G D+ L
Sbjct: 305 VQELAVVIAPKLLGGTLARTPLGELGFSAMDQVIPLSALTAEWLGCDLLL 354
>gi|86749753|ref|YP_486249.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
HaA2]
gi|86572781|gb|ABD07338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodopseudomonas palustris HaA2]
Length = 389
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 159/362 (43%), Positives = 206/362 (56%), Gaps = 12/362 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM AL R +G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE
Sbjct: 27 DRRFMQLALTLGRRGLGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALARAGEA 86
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+GRSPPCA II G+ RVV ++DP+ V G+G L GI V
Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIIAAGVARVVSAIEDPNPLVGGQGHGKLRAAGIAV 146
Query: 127 DRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E HA R E+R H+ LK+AVS D+ I G V ITG ++ +VHL
Sbjct: 147 ELGVCVEEAARDHAGHLLRVREQRPHVVLKLAVSTDDKIAADGRKPVAITGEAARARVHL 206
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LD ++ DSK++ +A P+
Sbjct: 207 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDRALRIPGDSKLVHSARATPL 266
Query: 246 IIVTENDDPVLALAFRKKN-------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ A A + D+ +L L +GVT LLVEGGA
Sbjct: 267 WLMASEIAEPAAAARLGAAGAEVIRAPDCQRTPGLDIAAVLAALSEKGVTRLLVEGGARA 326
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +F+ S LVD I L R IGE G+ + PL + + G D +
Sbjct: 327 ARAFVESGLVDEIWLLRGDKAIGEDGVDALDGLPLASITASSAWRVRDSERLGPDTLTIF 386
Query: 355 IG 356
Sbjct: 387 EP 388
>gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DCB-2]
gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense
DCB-2]
Length = 365
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 129/360 (35%), Positives = 184/360 (51%), Gaps = 14/360 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +MS AL + +G TS NP V C+IVKDG ++G G G PHAEV AL+ AG
Sbjct: 2 ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYHQKAGTPHAEVHALQAAG 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ V G+G+ L GI
Sbjct: 62 EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGI 121
Query: 125 IVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD E E + +L + K A++ D I S +T S+ V
Sbjct: 122 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVTNEASRAYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR D I+VG TV D+P L CR++ P+R+I+D ++ L + ++ ++ A
Sbjct: 182 HRLRDHFDVIMVGSETVRQDNPALNCRIDE--GRDPVRLIVDGTLQIPLQAAVLASSCTA 239
Query: 244 PVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P +I T P+ L + LK LL LV RG S+L+EGG +
Sbjct: 240 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-----SDVCLE 353
A S + +L+D + + +IG G PSPL L + ++ D+ +
Sbjct: 300 AGSLLREQLIDEVEFIYAPKLIGGKG-PSPLTGLELPLMAQAIPLEFLEIDGGTGDLRVR 358
>gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1]
Length = 357
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 13/358 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M AL + + G T NP+V LIVKD ++ G G HAE+ AL+
Sbjct: 1 MINKDKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDDKILSIGAHKKAGTDHAEIVALKN 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A E+ +GAT YVTLEPCS +G++PPC II GI++VV+ DP+ +VSG+G++WL
Sbjct: 61 AQEDVKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSA 120
Query: 123 GIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V+ + E L+ +KR ITLK A+S D + S I+ ++
Sbjct: 121 GIEVEVGVLKEECDKLNEDFFVYITQKRPFITLKCAMSLDGKLAKENKDSKWISSEKARK 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H+ R S AILVGI T+L D+P+LT R E+ P +++DP+ + D+ I K
Sbjct: 181 ISHIYRKYSSAILVGINTILKDNPKLTVR-LEGNEYQPYSVVIDPNLDIPYDANIFKKGY 239
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+IIV+ D + + ++ + D+K +L L + + VEGGA
Sbjct: 240 ENIIIIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKALYEIDIMHIFVEGGAYTISR 299
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGS--DVCLEY 354
F+ + D ++++R IG+G +F + D+ Y
Sbjct: 300 FLEENMWDKMLIFRGYKFIGKG------IGLDFYSDFSKIYKGSLQIIDDTTDLLEIY 351
>gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107]
Length = 354
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 110/353 (31%), Positives = 173/353 (49%), Gaps = 13/353 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL + G TS NP V +++ + G ++G G A G PHAEV AL +AG+ A+
Sbjct: 5 WMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAGDRAK 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G+ L G+ V
Sbjct: 65 GGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGLDVIS 124
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ ++E A+L R R TLK A+ D ++ S I+G ++ VH LR
Sbjct: 125 GVLQAEAAFQNRAFLHRVRTGRPWGTLKWAMGLDGRTALSNGESQWISGPTARRWVHQLR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
++SDA++VG GTV ADDP LT R G ++ P+R++L +L + +++ T+L + ++
Sbjct: 185 SKSDAVIVGGGTVRADDPLLTSR--GRRKPEPLRVVLSRSMELPVTAQLWDTSLASTLV- 241
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
P + + K L+ L RG +L E G +A + I
Sbjct: 242 ---AHGPEAQEQPFPHGPQRLLLSASEPKPLMQELANRGCNRVLWECGPELAAAAIRQGC 298
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYI 355
+ + + ++G +PL E V G D +
Sbjct: 299 IQEVAAVVAPKLMGGVAARTPLGELGFTAMDQVVAGSCLSPVPLGGDWLFQLR 351
>gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella avium 197N]
gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella avium 197N]
Length = 371
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 103/363 (28%), Positives = 168/363 (46%), Gaps = 11/363 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67
M AL +R + T+ NP V C+IV+DG ++G G T G HAEV AL AG +
Sbjct: 1 MQRALGLAREVLYTTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RVSG+G L G+ V
Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVS 120
Query: 128 RMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E + L+ R + LK+A S D + S ITG ++ H
Sbjct: 121 SGVCEEEALALNPGFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++D +L G+GT++ DDP+L R P R ++D F++ D+++ +
Sbjct: 181 RARADLVLTGLGTIVHDDPQLNVRAVS-TPRQPRRGVVDGQFRVPEDARLFDGEPVWVFT 239
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + + + + + ++ L + VE GA ++ + +
Sbjct: 240 ARQDHAKAERLASRNVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGALLA 299
Query: 305 SRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361
+ VD +++Y + +++G+ LE + + G DV L+
Sbjct: 300 ADCVDELLVYLAPVLLGDAAGMVRLPVLERLDAARRYAFTDLVRVGEDVRLQ-ARDPARW 358
Query: 362 QEL 364
Q L
Sbjct: 359 QAL 361
>gi|256060883|ref|ZP_05451043.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
gi|261324881|ref|ZP_05964078.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
gi|261300861|gb|EEY04358.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33]
Length = 373
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 223/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A I +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAAMGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|319892826|ref|YP_004149701.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5- phosphoribosylamino)uracil reductase
[Staphylococcus pseudintermedius HKU10-03]
gi|317162522|gb|ADV06065.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5- phosphoribosylamino)uracil reductase
[Staphylococcus pseudintermedius HKU10-03]
gi|323464142|gb|ADX76295.1| riboflavin specific deaminase [Staphylococcus pseudintermedius
ED99]
Length = 348
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 164/355 (46%), Gaps = 15/355 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-A 67
++ A++ + G T TNP+V +IVK G +IG G G HAE+QA++ AG +
Sbjct: 3 HYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAKHV 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+GAT YV+LEPCSHYG +PPCAQ II+ GI +VV D + + Q GI V+
Sbjct: 63 KGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAAKDTT--LQETSHDVMVQHGIEVE 120
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ A+ + +T+K++ S D S IT K V LR
Sbjct: 121 YRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATDHFESQWITSKQVKADVFQLR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
DAI+ G GT+ D+P LT R+ H P ++IL K++ D+++ + + I
Sbjct: 181 HSHDAIITGNGTLTHDNPSLTTRVED--GHHPAKVILSRSGKINWDAQLFQDHVTPIYIY 238
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
L ++ II ++ +L L +G +LVE G V F+ SRL
Sbjct: 239 TENQA-----LTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRL 293
Query: 308 VDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
V ILY + +IG G+ + F V+ D +D+ L K
Sbjct: 294 VTHFILYLAPKIIGGQGVNQFYQTPLVTPLNQLPQFEIVQTDIIDTDLKLRMQRK 348
>gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701]
Length = 354
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 109/351 (31%), Positives = 169/351 (48%), Gaps = 9/351 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + G TS NP V L++ +G+++G G A G PHAEV AL +AGE ARG
Sbjct: 1 MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC H+GR+PPC++ +I GIRRV+V ++DPD RV+G+G++ L Q G V
Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLVG 120
Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ L+A + R LK A+S D + S I+G S+ VH LRA
Sbjct: 121 VRQSEARNLNAAFCHRLRSGRPLGILKWAMSVDGRTALPNGASQWISGPASREWVHRLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DA++VG GT+ DDP LT R G + P+R+++ L +++ + ++
Sbjct: 181 RCDAVIVGGGTLRTDDPLLTSR--GRRAIEPLRVVISRELGLPEQAQLWDQSTAPTLVAH 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L + + + +L+ L RG +L E G ++A + + V
Sbjct: 239 GPEAPEPDRLQLDALGVERLELAGCEPLELMEALAQRGCNQVLWECGPSLAAAALRQGCV 298
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
+ + ++G +PL + L + G D+ E
Sbjct: 299 QRVAAVMAPKLLGGTAARTPLGDLQLNSMAMALPWREQGLSRSGDDLIWEL 349
>gi|242243028|ref|ZP_04797473.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis W23144]
gi|242233486|gb|EES35798.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Staphylococcus epidermidis W23144]
Length = 343
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 98/352 (27%), Positives = 154/352 (43%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +A+GA
Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 61 TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEFQY 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ T + + +T+K++ S D S IT K V+ LR +
Sbjct: 119 NENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA++ G T+ AD+P T R+ + + + +
Sbjct: 179 DAVITGRRTIEADNPLYTTRVPDGKHPIRVILSKTGQLDFNQQIF-------KDTASEIW 231
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
L K I II D +L L RG+ LLVE G + F+ S+ ++
Sbjct: 232 IYTENEKLKTDKSFIKIINISKCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ILY + +IG G + + F V ++ L+ K
Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343
>gi|227877508|ref|ZP_03995573.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus crispatus JV-V01]
gi|227862901|gb|EEJ70355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus crispatus JV-V01]
Length = 356
Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats.
Identities = 100/356 (28%), Positives = 159/356 (44%), Gaps = 8/356 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + + D +M A++ ++ + T NP V +IVKDG ++ G G HAE A
Sbjct: 1 MKEMENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDA 60
Query: 60 LEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ + E+ +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+
Sbjct: 61 ISKLTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAK 120
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L Q I V + E + K Y ITLK AVS D I A IT
Sbjct: 121 LRQHNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNE 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+VH RA AI++G T + D+P L + + + L+ K++
Sbjct: 181 TVYQRVHRERANYQAIMIGSNTAIIDNPSLLTTVTTDFPPIRIIVDRRGRLLNHLNIKLL 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
L I LA +NI+I + +++ L + S+ VEGG
Sbjct: 241 TDKLSPTWIFTQNTS---LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPT 297
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A++ + V+++I Y S I++G+ G + +R + + +E
Sbjct: 298 LANALLAEGQVNNLITYISPILLGQKGKLGI--SPSSKTTLHNLRAEKLDDNFRIE 351
>gi|73662304|ref|YP_301085.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494819|dbj|BAE18140.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 347
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 98/354 (27%), Positives = 163/354 (46%), Gaps = 14/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
++++ A++ ++ G T NP V ++V G ++G G G HAEVQAL+ A + A+
Sbjct: 3 QYLNYAIQLAQMVEGQTGLNPPVGAVVVNRGRIVGIGAHLKKGDKHAEVQALDMAKDNAK 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T Y++LEPC+H+G +PPC IIE GI RVV V D + G L + GI V+
Sbjct: 63 GGTIYISLEPCTHFGSTPPCVNKIIEAGINRVVYAVKDTTLP--SNGDSILQEAGIDVEF 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + + + +T+K++ S D S IT + K V LR
Sbjct: 121 RHQPDAENLYKDFFITKRQSVPMVTVKVSCSLDGKQATDTGESKWITNKLVKKDVFKLRH 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DA+L G GT+ AD+P+ T R+ +P+++IL + + + I K I
Sbjct: 181 HHDAVLTGSGTLNADNPQYTTRIEE--GKNPIKVILAQNGNIDFNLDIFKNTNTPIWIYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
L +++ II ++ ++ L +G+ LLVE G V F+ S
Sbjct: 239 QNEA-----LVTDIEHVEIIQLTNCSVENIMKNLYEKGIGRLLVEAGPTVTSEFLQSNYT 293
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +I+Y + +IG G + + F V ++ LE K
Sbjct: 294 NKLIIYYAPKIIGGSGKYQFFHTDKIIDLSEVPQFEIVDSQMLEQNLKLELRKK 347
>gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans
OS217]
gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella denitrificans OS217]
Length = 378
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 119/374 (31%), Positives = 179/374 (47%), Gaps = 19/374 (5%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ- 58
MP S FD MS A++ + T NP V C+IVKDGI + G G HAEV
Sbjct: 1 MPSWSKFDIEMMSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNA 60
Query: 59 --ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
AL+ A A GATAYVTLEPCSH+GR+PPCAQ ++E G+ +VVV + D + +V+G+G+
Sbjct: 61 LAALKSANLSAIGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGI 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPIT 175
L + GI V+ + + L+ +++ +T+K+A S D ++ S IT
Sbjct: 121 AMLREAGIAVEVGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILD 225
G S+N V LRA+S A++ GI TVLADDP L R + H P+RI+LD
Sbjct: 181 GDASRNDVQKLRARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLD 240
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+L+ D ++ ++ + V+ A + D R L +G+
Sbjct: 241 SKARLTADKRLFSITSPIILVSTQAYPETVIFPAHVQCLQFAPDNDGRVPLISLFHHLGK 300
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
+L+E GA +A + L D + LY++ ++G G Y +
Sbjct: 301 SYNQVLIEAGATLAGKVLELGLGDELYLYQAMKILGSHGRNLVQLPDYQAMDDIPSLQLK 360
Query: 342 RRDYFGSDVCLEYI 355
G D +
Sbjct: 361 DSRQLGEDRRYIFR 374
>gi|256159495|ref|ZP_05457263.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
gi|256254781|ref|ZP_05460317.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
gi|261221961|ref|ZP_05936242.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
gi|265997924|ref|ZP_06110481.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
gi|260920545|gb|EEX87198.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94]
gi|262552392|gb|EEZ08382.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1]
Length = 373
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 165/358 (46%), Positives = 224/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVS +G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSRKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|329768554|ref|ZP_08260041.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
gi|328836595|gb|EGF86254.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341]
Length = 356
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 12/363 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
FM+ AL ++ T TNP V +IVKD ++ RG GC HAE A+
Sbjct: 1 MHEYFMNLALLEAKRGAKYTHTNPLVGAIIVKDNKIVARGSHLRYGCEHAEKNAISTCKT 60
Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC + I++ GI +VVV DP+ VSG+G+++L G
Sbjct: 61 PEKIFNSTLYVTLEPCNHKGKQPPCTEAILKMGISKVVVAQLDPNPIVSGKGIKFLRDNG 120
Query: 124 IIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + L+ +KR ++ LK A S D + ITG +
Sbjct: 121 IEVTTGILEKEAYNLNYAYNLFHTQKRPYVVLKQATSLDGKL-AFTNERTQITGKEVYDF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V R AILVG TVL D+P+LT L + K L
Sbjct: 180 VRKERDNYQAILVGAKTVLIDNPKLTGASTSLYPPKRII------LDKEGTIFQHKELNL 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ II + +K++LT + G+ S+ VEGG + F
Sbjct: 234 FKDDSSEVIVFSKYKNEDLPSHVTIITPNEFTIKEILTEIAKLGIQSVYVEGGPCIHDQF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC--VRRDYFGSDVCLEYIGKNLC 360
+ S D +I Y S ++G S + + + G D+ + ++ C
Sbjct: 294 LASGYWDEVISYISPTLLGGSNTSSFNSDRTTNEKITLHDINVTKLGEDIRISGRKESQC 353
Query: 361 LQE 363
LQ+
Sbjct: 354 LQD 356
>gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Ruthia magnifica str. Cm (Calyptogena magnifica)]
Length = 349
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 175/360 (48%), Gaps = 18/360 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D + M AL+ + +NP V C+IVK +I +G G H E+ AL+
Sbjct: 4 TFSKNDTQNMVIALKLASQGKYGVKSNPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQ 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ +A+GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L
Sbjct: 64 QINHQAQGATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLEN 123
Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + L+ ++ + + KIA+S D M+ S IT +++
Sbjct: 124 AGIEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V LRA AI+ G GT++ D+P +T RL+ + +P+R+++D +++ S I A
Sbjct: 184 LDVQKLRANHQAIMTGSGTIINDNPLMTVRLDNINL-TPLRVVIDSKNQITNTSLNIFNA 242
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I N + DL +LT L +G+ ++L+E G +
Sbjct: 243 DAPTLI-------------LNPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPKLIG 289
Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
S I S L+D I+Y + I++G + ++ + V +D+ + K
Sbjct: 290 SMIKSNLIDEFIIYMAPILMGSNANSMLNLVIKNMAHKIKLNIVDVRMVSNDIKITATLK 349
>gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharophagus degradans 2-40]
gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharophagus degradans 2-40]
Length = 365
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 110/363 (30%), Positives = 176/363 (48%), Gaps = 7/363 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58
M S D RFM+ A++ +R T+ NP V C++V ++G G G HAEV
Sbjct: 1 MSNYSVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVN 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A+ +AG ARG TAYVTLEPCSH G++ PC + ++ G+ RVV ++DP+ +V+GRGL
Sbjct: 61 AIADAGAAARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDH 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI VD + L+ +++ + I +K+A+S D MA S IT
Sbjct: 121 LEAAGIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+++ V LRA+S A++ G+ +VL DDP LT R P+R+I+D +L D+ I+
Sbjct: 181 RARDDVQRLRARSCALITGVDSVLLDDPSLTVR-LSDDARQPLRVIVDSKLRLPKDAAIL 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + + L+ L L + +LVE GA
Sbjct: 240 SQPGKTVIATCANVNQAQSPYGDTEIWTLPEKDGRVSLQALARKLAQQECNEVLVETGAT 299
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A +F++S LVD +++Y + ++G P P+ + + G + +
Sbjct: 300 LAGAFVSSGLVDELVIYMAGKLLGSTARPLFDIPISKMSAQLPLSITDIRAIGDNWRITA 359
Query: 355 IGK 357
I
Sbjct: 360 IPD 362
>gi|254701540|ref|ZP_05163368.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
gi|261752090|ref|ZP_05995799.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
gi|261741843|gb|EEY29769.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513]
Length = 373
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|254486598|ref|ZP_05099803.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
gi|214043467|gb|EEB84105.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101]
Length = 356
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 125/356 (35%), Positives = 179/356 (50%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL R G NP+V C+IV+ ++GRG T GG PHAE +AL +AG +A GA
Sbjct: 1 MALALSLGRRGQGTVWPNPAVGCVIVQGDRIVGRGWTQPGGRPHAEPEALAQAGAQAVGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC+H G++PPCAQ +I+ + RVV+ D D RVSG+G+ L GI VD +
Sbjct: 61 TVYVTLEPCAHTGKTPPCAQALIDAQVARVVIACADSDPRVSGKGIAMLQAAGIAVDTGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E + +L+R R +TLK+A S D I A S IT ++ VH +RA+
Sbjct: 121 LEDEARKDHIGFLSRIDIARPMVTLKLASSFDGRIATATGESQWITAGPARRLVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT DDP LT R G P RI++ L L K+ +TA L PVI+
Sbjct: 181 HDAVMVGGGTARQDDPSLTVRDIG-ITRQPARIVVSSRLDLPLSGKLAQTAALIPVILCH 239
Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ ++ D +L L G+T + EGG +A S +
Sbjct: 240 ATSADPHLVTTWQQLGATLIPCATRAGQLDPADILRKLADHGLTRIFCEGGGGLAASLLQ 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD ++ + + + IG G+P+ L + F G D+ +
Sbjct: 300 ADLVDHLVGFTAGLAIGADGLPAIGPLGLSQLGKAPRFSLEYTRAIGPDILHSWSR 355
>gi|23501654|ref|NP_697781.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
gi|62289719|ref|YP_221512.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str.
9-941]
gi|82699648|ref|YP_414222.1| cytidine/deoxycytidylate deaminase zinc-binding subunit [Brucella
melitensis biovar Abortus 2308]
gi|148559719|ref|YP_001258746.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
gi|161618734|ref|YP_001592621.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
gi|163843038|ref|YP_001627442.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
gi|189023968|ref|YP_001934736.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
gi|225627265|ref|ZP_03785302.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
gi|225852283|ref|YP_002732516.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
23457]
gi|237815207|ref|ZP_04594205.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
gi|254689028|ref|ZP_05152282.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
870]
gi|254693511|ref|ZP_05155339.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
Tulya]
gi|254697163|ref|ZP_05158991.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
86/8/59]
gi|254704089|ref|ZP_05165917.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
gi|254707010|ref|ZP_05168838.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M163/99/10]
gi|254709881|ref|ZP_05171692.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
gi|254713882|ref|ZP_05175693.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
gi|254717061|ref|ZP_05178872.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
gi|254730059|ref|ZP_05188637.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
292]
gi|256031374|ref|ZP_05444988.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M292/94/1]
gi|256257278|ref|ZP_05462814.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
C68]
gi|256264212|ref|ZP_05466744.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
str. 63/9]
gi|260168507|ref|ZP_05755318.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
gi|260545528|ref|ZP_05821269.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
gi|260566663|ref|ZP_05837133.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
gi|260754523|ref|ZP_05866871.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
870]
gi|260757744|ref|ZP_05870092.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
292]
gi|260761569|ref|ZP_05873912.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
86/8/59]
gi|260883551|ref|ZP_05895165.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
C68]
gi|261213771|ref|ZP_05928052.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
Tulya]
gi|261218871|ref|ZP_05933152.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
gi|261314477|ref|ZP_05953674.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M163/99/10]
gi|261317423|ref|ZP_05956620.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
gi|261321630|ref|ZP_05960827.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
gi|261754749|ref|ZP_05998458.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
gi|261757977|ref|ZP_06001686.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
gi|265988460|ref|ZP_06101017.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M292/94/1]
gi|297248124|ref|ZP_06931842.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
B3196]
gi|23347574|gb|AAN29696.1| riboflavin biosynthesis protein RibD [Brucella suis 1330]
gi|62195851|gb|AAX74151.1| RibD, riboflavin biosynthesis protein RibD [Brucella abortus bv. 1
str. 9-941]
gi|82615749|emb|CAJ10745.1| Cytidine/deoxycytidylate deaminase, zinc-binding region:Bacterial
bifunctional deaminase-reductase, C-terminal:Riboflavin
bio [Brucella melitensis biovar Abortus 2308]
gi|148370976|gb|ABQ60955.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840]
gi|161335545|gb|ABX61850.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365]
gi|163673761|gb|ABY37872.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445]
gi|189019540|gb|ACD72262.1| riboflavin biosynthesis protein RibD [Brucella abortus S19]
gi|225617270|gb|EEH14315.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo]
gi|225640648|gb|ACO00562.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC
23457]
gi|237790044|gb|EEP64254.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A]
gi|260096935|gb|EEW80810.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038]
gi|260156181|gb|EEW91261.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40]
gi|260668062|gb|EEX55002.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str.
292]
gi|260672001|gb|EEX58822.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str.
86/8/59]
gi|260674631|gb|EEX61452.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str.
870]
gi|260873079|gb|EEX80148.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str.
C68]
gi|260915378|gb|EEX82239.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str.
Tulya]
gi|260923960|gb|EEX90528.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1]
gi|261294320|gb|EEX97816.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1]
gi|261296646|gb|EEY00143.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94]
gi|261303503|gb|EEY07000.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M163/99/10]
gi|261737961|gb|EEY25957.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99]
gi|261744502|gb|EEY32428.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686]
gi|263094456|gb|EEZ18278.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2
str. 63/9]
gi|264660657|gb|EEZ30918.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis
M292/94/1]
gi|297175293|gb|EFH34640.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str.
B3196]
gi|326408787|gb|ADZ65852.1| riboflavin biosynthesis protein RibD [Brucella melitensis M28]
Length = 373
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|256113297|ref|ZP_05454165.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
str. Ether]
gi|265994710|ref|ZP_06107267.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
str. Ether]
gi|262765823|gb|EEZ11612.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3
str. Ether]
Length = 373
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 165/358 (46%), Positives = 224/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLKQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++ S +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFLSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
Length = 362
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 106/358 (29%), Positives = 163/358 (45%), Gaps = 12/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G +
Sbjct: 1 MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+ V
Sbjct: 61 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120
Query: 127 DRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + +R + + +K A S D + + S IT ++ H
Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK--IIKTALLA 243
RA++ IL GIGTVL D+P + R + ++D + LD+ + L
Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVRDVDTPRQPRI-AVVDSKLDIPLDAHVLKAPSGCLI 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
++ L DL +L L RG L VE G + S I
Sbjct: 240 YTCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLI 299
Query: 304 NSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
LVD ++ Y++ ++G G + PL+ + G D+ + +
Sbjct: 300 REGLVDELLFYQAPKLLGTGAMGIANFGPLDSLDQGLPLVFHDVARLGPDLRIVARVQ 357
>gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
NRL30031/H210]
gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
NRL30031/H210]
Length = 370
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 11/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +
Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L
Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI + +E++ + +L+R R + LK A S D ++ S ITG ++
Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARK 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
V +LRA+S A+L GIGTVLAD+P+L R P RI+LD ++ LD ++
Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVRSFP-TLRQPARIVLDSRLQIPLDCHLVTDTE 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGA 296
VI+ +D+ L ++I II + L+ L G +LVE G+
Sbjct: 241 SPTVIVTLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
+A +F+ LVD I+LY++ ++G G L E + + D+
Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAALLSGGPWQSQSVEIIVQDIKW 360
Query: 353 EYIGKN 358
K+
Sbjct: 361 VLRKKS 366
>gi|160888034|ref|ZP_02069037.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
gi|317478584|ref|ZP_07937741.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
gi|156862533|gb|EDO55964.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492]
gi|316905225|gb|EFV27022.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36]
Length = 351
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 103/338 (30%), Positives = 163/338 (48%), Gaps = 13/338 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+
Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60
Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L
Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGF 177
G V + E+E + + ++T +R +ITLK A S D I + V ++
Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ VH RA+ AILVG T D+P L R + + + SL
Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPCLNVRHWYGRSPVRIVLDRQQKLSPSLHLFDG 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P ++ TE L + + + L +L+ L RG+ SLLVEGG+
Sbjct: 241 S----VPTLVFTEAPHAPLPN---VEYLPVSDYRRNILPELMETLYTRGLQSLLVEGGSQ 293
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
SFI++ L D I + + ++ G+ +P
Sbjct: 294 TLQSFIDAGLWDEIFVEEAPHLL-HSGVKAPEISDGYP 330
>gi|313675594|ref|YP_004053590.1| riboflavin biosynthesis protein ribd [Marivirga tractuosa DSM 4126]
gi|312942292|gb|ADR21482.1| riboflavin biosynthesis protein RibD [Marivirga tractuosa DSM 4126]
Length = 359
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 175/361 (48%), Gaps = 21/361 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D FM AL+ + + S NP V C+IV DG VIG G G PHAEV A+
Sbjct: 10 MSKQDELFMQRALQLAGYGKATASPNPMVGCVIVLDGKVIGEGWHKKAGEPHAEVMAIRS 69
Query: 63 A--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E + +TAYVTLEPC+HYG++PPCA+ ++E +++VV+ DP+ V+G+G+Q L
Sbjct: 70 VENPELLKSSTAYVTLEPCAHYGKTPPCAELLVEKQLKKVVIGAVDPNPLVAGKGIQILK 129
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V+ + E E A+ T +KR +I LK A + D I S I+ +S
Sbjct: 130 KAGIEVESAVLEQECLEVNKAFFTYMQKKRPYIILKWAQTSDGFIARENFDSKWISNPLS 189
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH R ++DAIL+G T DDP+LT R +P+R+++D L D KI
Sbjct: 190 RQIVHKWRTETDAILIGKNTAKYDDPQLTARDWS--GKNPIRLVIDHDLTLGNDLKIFDG 247
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ +A I L+ +L L + S+L+EGGA
Sbjct: 248 EQKTIFFHSQDQKIERKGIA------AIKLSKEDFLRDMLNYLHQEKIQSVLIEGGAQTV 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS----DVCLEYI 355
SFI++ L D ++ + + E GI + K+ V ++ DV Y
Sbjct: 302 QSFIDAGLWDEARIFTASVSF-EKGIKA-----AELKSHQLVSQENIQDKNQTDVLTTYR 355
Query: 356 G 356
Sbjct: 356 N 356
>gi|294852128|ref|ZP_06792801.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
gi|294820717|gb|EFG37716.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026]
Length = 373
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 167/358 (46%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E Y+ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETYIASEFKILRRMRYADDACAEYVRN 372
>gi|293366290|ref|ZP_06612971.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319592|gb|EFE59957.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 343
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 104/352 (29%), Positives = 160/352 (45%), Gaps = 14/352 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +GA
Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+
Sbjct: 61 TIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAVKDTT--LVSKGDEILREAGIEVEFQY 118
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ T + + +T+K++ S D S IT K V+ LR +
Sbjct: 119 NENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA++ G T+ AD+P T R+ P+R+IL +L + +I K I
Sbjct: 179 DAVITGRRTIEADNPLYTTRVPD--GKHPIRVILSKKGQLDFNQQIFKDTASEIWIYTEN 236
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
K I II D +L L RG+ LLVE G + F+ S+ ++
Sbjct: 237 EKLK-----TNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291
Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ILY + +IG G + + F V ++ L+ K
Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343
>gi|93007294|ref|YP_581731.1| riboflavin biosynthesis protein RibD [Psychrobacter cryohalolentis
K5]
gi|92394972|gb|ABE76247.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychrobacter cryohalolentis K5]
Length = 370
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 116/361 (32%), Positives = 174/361 (48%), Gaps = 29/361 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM A+ ++ + NP+V C+IV+ V+G+G G PHAEV AL++AG
Sbjct: 29 AKDHYFMMLAIEQAKLGLYTARPNPAVGCVIVQAEEVVGQGFHPKAGQPHAEVFALKDAG 88
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q GI
Sbjct: 89 IRTVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVKLLEQAGI 148
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + L+ + ++ LKIA S D MA S ITG ++ V
Sbjct: 149 AVSVGVLKTQAEALNKGFLKAMRNQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDV 208
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG-----LQEHSPMRIILDPHFKLSLDSKIIK 238
LRAQS AI+ G TV+ D+P+L R N + P +ILD +L D +
Sbjct: 209 QKLRAQSGAIITGSETVIVDNPQLNVRSNQLGIAIEEVPHPKVVILDRRGRLKHDLQSDY 268
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P + + + + L ++ +L+E GA+V
Sbjct: 269 QLCRRP--------------------DTLYWREDNLRELLKVLVTEYQCYDVLIEAGASV 308
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEYI 355
A SF+ +LVD +I+Y++ ++G+ + F + GSD+ L +
Sbjct: 309 AGSFLQQQLVDELIVYQAPCLLGQKARAMVDINPLSLAQQLRFDIQCHEQLGSDLKLTLL 368
Query: 356 G 356
Sbjct: 369 P 369
>gi|256842978|ref|ZP_05548466.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
125-2-CHN]
gi|256848647|ref|ZP_05554081.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
gi|262045946|ref|ZP_06018910.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
MV-3A-US]
gi|293381447|ref|ZP_06627444.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
214-1]
gi|256614398|gb|EEU19599.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
125-2-CHN]
gi|256714186|gb|EEU29173.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US]
gi|260573905|gb|EEX30461.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
MV-3A-US]
gi|290921994|gb|EFD98999.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
214-1]
Length = 353
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 158/353 (44%), Gaps = 7/353 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +M A++ ++ + T NP V +IVKDG ++ G G HAE A+ +
Sbjct: 1 MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK 60
Query: 63 A-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+ L Q
Sbjct: 61 LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ 120
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V + E + K Y ITLK AVS D I A IT
Sbjct: 121 HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH RA AI++G T + D+P L + + + L+ K++
Sbjct: 181 QRVHRERANYQAIMIGSNTAIIDNPSLLTTVTTDFPPIRIIVDRRGRLLNHLNIKLLTDK 240
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
L I LA +NI+I + +++ L + S+ VEGG +A+
Sbjct: 241 LSPTWIFTQNTS---LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLAN 297
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + V+++I Y S I++G+ G + +R + + +E
Sbjct: 298 ALLAEGQVNNLITYISPILLGQKGKLGI--SPSSKTTLHNLRAEKLDDNFRIE 348
>gi|32474082|ref|NP_867076.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
baltica SH 1]
gi|32444619|emb|CAD74621.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula
baltica SH 1]
Length = 427
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 119/383 (31%), Positives = 181/383 (47%), Gaps = 31/383 (8%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S+ D R+M+ A+ + G NP V C +V+D + IG+G G PHAEV+AL +
Sbjct: 46 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCALVRDSVCIGKGYHQRFGGPHAEVEAL-SS 104
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G
Sbjct: 105 CDDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 164
Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E + L AYL R + K A+S D I S ITG S+
Sbjct: 165 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 224
Query: 183 VHLLRAQSDAILVGIGTVLADDP-------------ELTCRLNGLQEHSPMRIILDPHFK 229
VH LRA DAI VG+GTV+AD+P + + +R++
Sbjct: 225 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTHTEDRSNQLVRLVYSRSRL 284
Query: 230 LSLDSKIIKTALLAPVIIVTENDD---------PVLALAFRKKNINIIYCDCRDLKKLLT 280
L S++++TA P ++ ++ ++ + I + L L +
Sbjct: 285 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 344
Query: 281 ILVGRG--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
RG +T L+VEGG+ + SF + +D + + + IG P PL + ++
Sbjct: 345 KDNPRGLAMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGKCIGGRSAPGPLGDPGIKALS 404
Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356
+ R D F +DV L Y
Sbjct: 405 DATSLRMSRVDSFDNDVRLIYRR 427
>gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 377
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 136/353 (38%), Positives = 189/353 (53%), Gaps = 8/353 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
FM AL + S NP V C+IVKDG V+G G G PHAEV+AL AG+
Sbjct: 18 HGYFMRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMAGDR 77
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A+GATAYVTLEPCSH+G++PPCA ++E GIRRVV + DP+ +V+GRGL+ L+ G +
Sbjct: 78 AQGATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEV 137
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V +ME + ++ R R +TLK A+S D + S ITG +++ + HL
Sbjct: 138 VGPVMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHL 197
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+ DAILVGI TV+ DDP L R + SP ++ILD ++ LD+K +K
Sbjct: 198 LRAEHDAILVGINTVINDDPALNVR--SVDGDSPKKVILDGGLRVPLDAKALKDGERIVF 255
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
D V AL + + DL +L+ L G GV SLLVEGG V +F+
Sbjct: 256 TSTDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAFV 315
Query: 304 NSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ L D + L+ S ++G G +E + G+D+ LE
Sbjct: 316 DRCLGDMVSLFISPSILGRGLQLCESFEIEGMENRVHIRDHSIRRAGNDIWLE 368
>gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
Vesicomyosocius okutanii HA]
gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
Vesicomyosocius okutanii HA]
Length = 349
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 100/360 (27%), Positives = 175/360 (48%), Gaps = 18/360 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S + + M+ A++ + +NP V C+IVK +I +G G H E+ AL+
Sbjct: 4 TFSKNETQNMTIAIKLALQGRYGVKSNPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQ 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ +A GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L
Sbjct: 64 QINYKAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKY 123
Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + L+ ++ R + I K+A+S D M+ S IT +++
Sbjct: 124 AGIEVKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V LRA AI+ G GT++ D+P +T RL+G+ P+R+++D +++ S I
Sbjct: 184 LDVQKLRANHQAIITGSGTIINDNPLMTVRLDGVNS-KPLRVVIDSKNQITDTSLNIFNT 242
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I N ++ DL +LT L +G+ ++L+E G +
Sbjct: 243 DAPTLI-------------LNPDNTKVLASGKLDLSNVLTQLGNQGINNVLLEAGPKLIG 289
Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ I L+D I+Y + I++G + +++ + V G ++ + K
Sbjct: 290 AMIKINLIDEFIIYMAPILMGSDANSILNLVIKDMSYKIKLDIVDVRMVGDNIKITATLK 349
>gi|212223758|ref|YP_002306994.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
gi|212008715|gb|ACJ16097.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1]
Length = 361
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 108/363 (29%), Positives = 167/363 (46%), Gaps = 16/363 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +FM AL ++ G + NP V +IVKDG VIG G G HAE+ A+E+
Sbjct: 1 MMDEDKKFMHLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRKFGEKHAEINAIED 60
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP V+GRG++ +
Sbjct: 61 AKDRGHDTRGATLYVTLEPCSHWGKQPPCADRIIAEGFKRVVVAMKDPHSLVAGRGIEKM 120
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI VD + E E K ++ K +++K+A++ D I S ITG
Sbjct: 121 QRAGIEVDVGILEEEAKKLNEIFIKYITTKIPFVSIKLALTLDGFIATESFSSQWITGDK 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ +V LR + AI+VG GT+L D+P+L CRL +
Sbjct: 181 ARQKVQELRRRHMAIMVGAGTILRDNPKLNCRLPECPPKYKVI------LDRHGLIGEEL 234
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + N +N + D +++L L G+ S+L+EGG +
Sbjct: 235 SGGRRFRLFNDGNVIIFTENPEAFGEVNATIVEETDPERILRKLGEMGIDSVLIEGG-RI 293
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A F++ D ++ + G G P ++E + G + +
Sbjct: 294 ACQFLS--YADKFYIFYGPKLFGRGIKPFECLSVKEANEAPVLEIESIEKLGESLLVTAY 351
Query: 356 GKN 358
+
Sbjct: 352 PGD 354
>gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2148]
gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2148]
Length = 371
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 116/369 (31%), Positives = 179/369 (48%), Gaps = 16/369 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ + R M+ AL+ +R NP V C++ +DG VIG G T G HAEVQAL EA
Sbjct: 3 TELNTRMMARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQALAEA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G +A GATAYVTLEPCSH G++ PCA +I G+ RV ++DP+ V+G GL L G
Sbjct: 63 G-DASGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAAG 121
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V+ +E++ + + +++R R + K+A+S D MA S ITG ++
Sbjct: 122 IEVEVGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARAD 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPE----------LTCRLNGLQEHSPMRIILDPHFKLSL 232
V LRA S A++ GIGTVL+DD + P+R++LD + +
Sbjct: 182 VQRLRAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTPA 241
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLL 291
+ I+ A + + D +A + +L +L+ L R +L
Sbjct: 242 SAAILDGAAPTLICHDEKLDASTAIVASGVDRLALGGDENGLNLAQLIDYLSARQSNEIL 301
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348
VE G +A +F+ L+D +I+Y + +++G P PLE + G
Sbjct: 302 VECGPRLAGAFVREGLLDELIVYMAPVLMGSAARPLLDLPLEAMAQKIPLQIEDMRKVGD 361
Query: 349 DVCLEYIGK 357
D + I +
Sbjct: 362 DWRMTAIPQ 370
>gi|269302657|gb|ACZ32757.1| riboflavin biosynthesis protein RibD [Chlamydophila pneumoniae
LPCoLN]
Length = 376
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 108/361 (29%), Positives = 162/361 (44%), Gaps = 9/361 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ NP V C++V++ +IG G AY G PHAE A++
Sbjct: 4 FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A G+ YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q
Sbjct: 64 ASMPISGSDVYVSLEPCSHFGSRPPCANLLIKYKVSRVFVALVDPDPKVAGQGIAMLRQA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + YL ++ LK A S D + + S IT +++
Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AILVG TVL+DDP LT R + P+R++LD + SK+
Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDK 243
Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+N VL + DL K+ L + + +LVEGG
Sbjct: 244 TSPTLYVTTERCPKNYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEGGT 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLE 353
+ S + R V+S++LY +++G+ P G L G+ + +
Sbjct: 304 TLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLKVV 363
Query: 354 Y 354
+
Sbjct: 364 W 364
>gi|270295600|ref|ZP_06201801.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
gi|270274847|gb|EFA20708.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20]
Length = 351
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 102/338 (30%), Positives = 164/338 (48%), Gaps = 13/338 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+
Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60
Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L
Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGF 177
G V + E+E + + ++T +R +ITLK A S D I + V ++
Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ VH RA+ AILVG T D+P L R + + + SL
Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPGLNVRHWYGRSPVRIVLDRQQKLSPSLHLFDG 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P ++ TE L + + + L +++ +L RG+ SLLVEGG+
Sbjct: 241 S----VPTLVFTEIPHAPLPN---VEYLPVSDYRQNILPEIMEMLYTRGLQSLLVEGGSQ 293
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
SFI++ L D I + + ++ G+ +P
Sbjct: 294 TLQSFIDAGLWDEIFVEEAPHLL-HSGVKAPEISDGYP 330
>gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273]
gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium
luteolum DSM 273]
Length = 366
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 116/364 (31%), Positives = 174/364 (47%), Gaps = 13/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ DA M+ + + G S NP V LIV DG VIG G G PHAEV A+
Sbjct: 2 LTEADACHMARCIELALQGAGSVSPNPMVGSLIVCDGSVIGEGYHMQCGGPHAEVNAIAA 61
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ +T YV LEPCSH+GR+PPC+ IIE I RVVV DP+ +V+GRG+ L
Sbjct: 62 VSDPSLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLR 121
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V + E+E A++T + R + LKIA + D I A S ITG +
Sbjct: 122 DSGVDVYEGVLEAECLRLNEAFITSHTKGRPFVALKIAETLDGRIATADGASKWITGSEA 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +VH LR+ DA+L G TVL D +LT R +P+R++LD ++ D+ + +
Sbjct: 182 RREVHRLRSTYDAVLAGAATVLLDRAQLTVRDVE--GRNPLRVVLDSGLRVPFDAPVFSS 239
Query: 240 ALLAPVIIVTEN----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
V + + DL ++L L R V SLLVE G
Sbjct: 240 DAPTLVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQVLRELHRRDVLSLLVESG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351
+ ++ +F+ + L D ++++ + + G +PS +E + FG D+
Sbjct: 300 SRLSAAFVRAGLADKLLMFIAPKLFGADALPSFAPLAVEAPSGAVQLEFGQSKAFGRDIL 359
Query: 352 LEYI 355
LE
Sbjct: 360 LEAY 363
>gi|313680606|ref|YP_004058345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Oceanithermus profundus DSM 14977]
gi|313153321|gb|ADR37172.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Oceanithermus profundus DSM 14977]
Length = 380
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 110/379 (29%), Positives = 163/379 (43%), Gaps = 23/379 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S D RFM AL + G TS NP V ++V G ++G G G PHAEV AL
Sbjct: 1 MSFSDPDRRFMQRALALAERARGHTSPNPIVGAVVVSGGRIVGEGFHPRAGEPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AGE ARGAT YVTLEPC+H+GR+PPC+ ++E G+ RVV DP SG G + L
Sbjct: 61 RQAGEAARGATVYVTLEPCNHHGRTPPCSLALLEAGVSRVVYAAADPGE-TSGGGAERLR 119
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V+ + E E ++ A+ R + K A++ D + G G ++ +S
Sbjct: 120 RAGVRVEAGLLEEEARVQNRAFFHAAAFGRPFVLWKAALTLDGRVAARGRGGEAVSNTLS 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPE----------LTCRLNGLQEHSPMRIILDPHFK 229
H R A+ VG GTV ADDP + P++++ D K
Sbjct: 180 HRVAHGYRQACAAVAVGAGTVRADDPALTVRAPDFRAFAAMVEPPPLRDPLKVVFDSQAK 239
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRK--------KNINIIYCDCRDLKKLLTI 281
+++ + V + ++ L
Sbjct: 240 TPPSARLFEPGPRGEPARVLVFVGEDADADRVQALEAAGAEVVSLPAGEGGLSVEAALAE 299
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNF 338
L RGV SLL+EGG +A SF+ + VD + + ++GEG F
Sbjct: 300 LYRRGVDSLLLEGGPRLAGSFVRAGRVDRAAFFVAPRILGEGRGLIEGFSFGSMQRAMRF 359
Query: 339 MCVRRDYFGSDVCLEYIGK 357
+ R + D+ LE +
Sbjct: 360 LPERSEVLEGDLWLEGRLE 378
>gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 374
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 16/367 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D R M A++ ++ T+ NP+V C+I + ++G G G PHAEV AL++
Sbjct: 2 FTHLDTRLMLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI +V+ + DP+ V+GRG++ L +
Sbjct: 62 AGTLAKGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKA 121
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E L+ ++ +K + LK+A S D +A S ITG ++
Sbjct: 122 GIDVQVGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKL 230
V RA++ AIL TV+ADDP L R + P+R+I+D +L
Sbjct: 182 DVQRHRARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRL 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ ++ + E D+ + DL +L+ L G+ +
Sbjct: 242 TPAYQLFHLPGKTILARTEEGDEDWPESVSQWVVPTRQNSQQIDLTELMRQLAEAGINHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A ++++LVDS+ILY++ ++G L +
Sbjct: 302 WVEAGAGLAGGLLDAQLVDSLILYQAPKLMGADSRSLMNLPTLTAMDQVIDLNITDVRMV 361
Query: 347 GSDVCLE 353
D+ +
Sbjct: 362 DCDLKIT 368
>gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
CNS-205]
gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola
CNS-205]
Length = 353
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 113/362 (31%), Positives = 166/362 (45%), Gaps = 24/362 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ AL +A
Sbjct: 5 SVDEA-MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVALAQA 63
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARG TA VTLEPC H GR+ PC+ +++ GI RVV+ V DP R + G L G
Sbjct: 64 GERARGGTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDP-NRAASGGAATLRAAG 122
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I VD + + + T ++ K A + D A S+ IT +++
Sbjct: 123 IRVDLGVRAAEAEAGNVAWLTSTRRGWPYVIWKYAATLDGRSAAADGTSMWITSEVARMD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKT 239
VH LR DA+L G+GTVLADDP LT R P+R+++D + +++
Sbjct: 183 VHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSTGRTPPGARVRDD 242
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
A + E LL L RGV + LVEGG +A
Sbjct: 243 AAPTWIATAEEVGVDPEGRVELAG--------------LLAALHQRGVRAALVEGGPRLA 288
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ + LVD I+ Y + ++G G + + + V G D+ + +
Sbjct: 289 GAFLAAGLVDKIVGYVAPRLLGAGPAALTEAGVTTITEAIDCEVVDVTQVGPDLRITALP 348
Query: 357 KN 358
+
Sbjct: 349 RK 350
>gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
6192]
gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
6192]
Length = 362
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 125/359 (34%), Positives = 192/359 (53%), Gaps = 4/359 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D FM AL +R G TS NP V ++VKDG V+G G G PHAEV AL E
Sbjct: 1 MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGEEARGA YVTLEPC H+GR+PPC I++ G+RRVVV DP+ +V+G+GL L++
Sbjct: 61 AGEEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + E + +++R R + K+A S D I + S ITG ++
Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARW 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LRA SD ++ GIGTVLADDP T R+ G + P ++LD +L + +++++
Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREGT 240
Query: 242 LAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ V + + I D++ + L GV +VE GA V
Sbjct: 241 VVMVGPGVDAGWRGEVERRGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAGVTG 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+F+ + +VD ++++ + V+GEG + + EG E+ + G DV + + +
Sbjct: 301 AFLEAGMVDELVVFVAPRVLGEGRGWVEGRVVEGLGEREWEVREVRRVGEDVMVRCVRR 359
>gi|29840652|ref|NP_829758.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
gi|29835002|gb|AAP05636.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC]
Length = 368
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 95/345 (27%), Positives = 157/345 (45%), Gaps = 6/345 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ NP V C+IVK+G +IG G G HAE A+
Sbjct: 4 FSEQQLFFMRRAIELGEKGRFSAPPNPWVGCVIVKNGQIIGEGYHEKRGQLHAEENAINS 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G+ YVTLEPC HYG +PPC +I+ + V V + DPD RV+G+G+ L +
Sbjct: 64 TSVSVEGSEVYVTLEPCCHYGNTPPCVNLLIKHKVSTVYVALLDPDSRVAGKGVASLKEA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + +Y+ ++ + +K A + D + S IT ++
Sbjct: 124 GIRVFEGLGKKEAEESLKSYIHQRTYGTPWVVIKSAATVDGQTADSHGKSQWITCPEARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA S AI+VG TVL D+P LT R H P+R+++D + +KI +
Sbjct: 184 DVGKLRASSQAIVVGSKTVLQDNPLLTAREPSGELYSHQPLRVVVDSLGNVGPQAKIFHS 243
Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ +++ + + +L KL++ L + + +LVEGG
Sbjct: 244 HGKSLYVTTTQCSKDHIKSIEDLGVDILVTEPRDSRVNLHKLMSYLATKQILQVLVEGGP 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
+ +F+ RL +++++Y + G+ P + GY ++ +
Sbjct: 304 VLHTAFLKERLANALVIYLGPKIFGDQRKPLFGDLGYQLQSAQKI 348
>gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sutterella wadsworthensis 3_1_45B]
gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sutterella wadsworthensis 3_1_45B]
Length = 415
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 118/366 (32%), Positives = 177/366 (48%), Gaps = 13/366 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D +M AL +R ++ NPSV +IV++G ++G G T G PHAEV AL
Sbjct: 51 RSAADDAWMDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRS 110
Query: 63 AGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A E GAT YVTLEPCSHYGR+PPCA +I+ + RVV V DP+ +V GRG++ L
Sbjct: 111 AFERGLSVEGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRML 170
Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI + + E+E + A+LTR + +K AV+ D S ITG
Sbjct: 171 LEAGIPAELGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEA 230
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ V R ++ A+L GIGTVLADDP++ R QE P+RI++DP + K++
Sbjct: 231 ARADVQFWRGRAGAVLTGIGTVLADDPQMNVR-LPDQERQPLRIVIDPRMETPPAGKLLT 289
Query: 239 TALLAPVIIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ I A A + DL++L+ L R V + VE
Sbjct: 290 SKGGKVFIAAAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVE 349
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDV 350
G ++ + + L+D ++ Y + + G G P+ + E + D G D
Sbjct: 350 AGPRLSGALFAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPGAAYRWRLQSLDQIGGDF 409
Query: 351 CLEYIG 356
+
Sbjct: 410 RVLLRR 415
>gi|307945264|ref|ZP_07660600.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
gi|307771137|gb|EFO30362.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4]
Length = 376
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 150/373 (40%), Positives = 216/373 (57%), Gaps = 17/373 (4%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCP 53
M + D RFM+AA R++R +G NP VA LIV++ V+GRG T+ G P
Sbjct: 1 MAFTQMQTDLRFMAAAERYARRGLGEVWPNPPVAALIVRENENGQHVVVGRGRTSKPGGP 60
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAEV AL AG A+GAT YVTLEPCSHYGR+PPC+ ++E GI+RVV+ + DP+ RV+G
Sbjct: 61 HAEVNALTMAGTAAKGATCYVTLEPCSHYGRTPPCSVALVEAGIKRVVIGMRDPNPRVAG 120
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
RG++ L + G+ V+ + L++ ++ R + R + LK+A+S+D IG G G V
Sbjct: 121 RGIKMLEEAGVEVEVGVHEVACQELYSGFIMRITQHRPKVLLKLAISKDGFIGKKGEGQV 180
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ +S VH R+ DAI+VGIGT LADDP+LTCRL G+ E SP+R+I+D +L L
Sbjct: 181 RISNPLSMRHVHGFRSTYDAIMVGIGTALADDPQLTCRLPGMAERSPVRVIIDSDARLPL 240
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-----KLLTILVGRGV 287
SK++ TA PV +V + P + K +I + + L RG+
Sbjct: 241 ASKLVMTAAEVPVWLVCSSTAPAERIEALSKAGVLIIRVPTTDCGIEPSVVTSALSTRGI 300
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343
T L+VEGG+ +A +F+ + LVD + + I +GEGGIP LE+ + +F V
Sbjct: 301 TRLMVEGGSRIASAFLKAGLVDDMCIVTGDIEVGEGGIPVLHDLRLEDVVADPSFAKVEA 360
Query: 344 DYFGSDVCLEYIG 356
GSD +
Sbjct: 361 GVIGSDQFIYLRR 373
>gi|322381771|ref|ZP_08055725.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
protein/5-amino-6-(5-phosphoribosylamino) uracil
reductase-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321154159|gb|EFX46481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like
protein/5-amino-6-(5-phosphoribosylamino) uracil
reductase-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 362
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 114/350 (32%), Positives = 179/350 (51%), Gaps = 11/350 (3%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76
++ G T NP V C++VKDG +IG G + G HAEV AL+ AG EA G+TAYVTL
Sbjct: 1 MAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAEAEGSTAYVTL 60
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
EPCSH+G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI VD + +E
Sbjct: 61 EPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEVDVGLLAEEAS 120
Query: 137 -FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
A+ V +T+K A + D I S ITG +S+ VH +R Q ILV
Sbjct: 121 AMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHTMRHQHQGILV 180
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----EN 251
+ TV+ADDP+L+ R + P+RI+ D +L L++++++ P I++T
Sbjct: 181 SVDTVIADDPQLSTR-LTVPALQPVRIVADSRLRLPLEAQVLQDLDRQPTIVLTTELSSP 239
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
+ + DL+ + L R + S+L+EGG + + + LVD I
Sbjct: 240 ERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGAMLEQGLVDKI 299
Query: 312 ILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+L+ + +IG P + E + + G D+CL
Sbjct: 300 MLFVAPKIIGGKLSPQAISMEGWERMKDALRLERFQAEPVGEDICLSGYP 349
>gi|256369199|ref|YP_003106707.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
gi|255999359|gb|ACU47758.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915]
Length = 373
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDKKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|17987472|ref|NP_540106.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Brucella melitensis bv. 1 str. 16M]
gi|256044453|ref|ZP_05447357.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Brucella melitensis bv. 1 str. Rev.1]
gi|260563804|ref|ZP_05834290.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
str. 16M]
gi|265990874|ref|ZP_06103431.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
str. Rev.1]
gi|17983168|gb|AAL52370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Brucella melitensis bv. 1 str. 16M]
gi|260153820|gb|EEW88912.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
str. 16M]
gi|263001658|gb|EEZ14233.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1
str. Rev.1]
Length = 373
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHITSEFKILRRMRYADDACAEYVRN 372
>gi|15618780|ref|NP_225066.1| riboflavin deaminase [Chlamydophila pneumoniae CWL029]
gi|15836404|ref|NP_300928.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
gi|16752168|ref|NP_445535.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
gi|33242231|ref|NP_877172.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
gi|6225949|sp|Q9Z735|RIBD_CHLPN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|4377188|gb|AAD19009.1| Riboflavin Deaminase [Chlamydophila pneumoniae CWL029]
gi|7189911|gb|AAF38776.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39]
gi|8979245|dbj|BAA99079.1| riboflavin deaminase [Chlamydophila pneumoniae J138]
gi|33236742|gb|AAP98829.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183]
Length = 376
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 162/361 (44%), Gaps = 9/361 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ NP V C++V++ +IG G AY G PHAE A++
Sbjct: 4 FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A G+ YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q
Sbjct: 64 ASMPISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + YL ++ LK A S D + + S IT +++
Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AILVG TVL+DDP LT R + P+R++LD + SK+
Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDK 243
Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
EN VL + DL K+ L + + +LVEGG
Sbjct: 244 TSPTLYVTTERCPENYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEGGT 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLE 353
+ S + R V+S++LY +++G+ P G L G+ + +
Sbjct: 304 TLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLKVV 363
Query: 354 Y 354
+
Sbjct: 364 W 364
>gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 377
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 110/354 (31%), Positives = 166/354 (46%), Gaps = 12/354 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA---GE 65
FM ALR + + TS NP V C++V +IG+G T G PHAEV AL +A G
Sbjct: 14 FMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRDARARGH 73
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+GA AYVTLEPCSH+GR+ PC ++E GI RVV + DP+ RV+G+G + L G+
Sbjct: 74 ATQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERLRAAGVE 133
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + +L+R V + + LK A S D + + S IT ++ VH
Sbjct: 134 VEVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAAARADVH 193
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L G+GTVLADDP L R E P +LD H + D+ +++
Sbjct: 194 AWRARACAVLTGVGTVLADDPRLDVREVP-TERQPWVAVLDSHLRTPPDAALLRAQARDV 252
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHS 301
VI D+ + L ++ R + VE GA + +
Sbjct: 253 VIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEAGAIASGA 312
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVCL 352
+ LVD ++LY + ++G+G +P + G D+ +
Sbjct: 313 LCAAGLVDEVLLYLAPKLLGQGRGIAPFGPLPDLGQALGLTIRSVAQVGPDLRV 366
>gi|323699086|ref|ZP_08110998.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. ND132]
gi|323459018|gb|EGB14883.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
ND132]
Length = 364
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 87/364 (23%), Positives = 149/364 (40%), Gaps = 17/364 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M+ A+ + G T+ NP V ++V+DG+++ G G HAE + L +A G +
Sbjct: 1 MARAVELAGRGRGATAPNPCVGAVLVRDGVIVAEGWHTRFGRLHAERECLADARRKGVDP 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGA YVTLEPC+H+G++PPC + +IE G+ V V DP+ +G + + +
Sbjct: 61 RGAAMYVTLEPCNHHGKTPPCTEALIEAGVAEVFVGTRDPNPVAAGGVEKLRAHGIEVTV 120
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
++E + + +L Q + +K+A + D I A P++ S +VH LR
Sbjct: 121 GVLEQPCRDLIADFLLWQNTHSCYNIVKMAATLDGKIAAAARRPEPVSCPESLARVHDLR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--------- 238
A + A++VG T AD+P LTCR L + +L D
Sbjct: 181 ALAGAVIVGGNTFYADNPSLTCRKKDLPPDFVQPFGVIVTSRLPDDPSRFTLLRERPERA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + + D + + + G L EGG
Sbjct: 241 IFMTSKTAAHSPQADVLRRRGTSVWPMPGRAGSLVLACGFERLRYDCGCHYTLCEGGGRF 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLE 353
A + I L D ++ + + ++G+ PS +F + G+D+ L
Sbjct: 301 ALALIEQGLADELVHFVAPRILGDDAAPSAYSGRDNVPMAEALDFRIADFEPVGTDIMLT 360
Query: 354 YIGK 357
+
Sbjct: 361 LRRR 364
>gi|90579822|ref|ZP_01235630.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
S14]
gi|90438707|gb|EAS63890.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum
S14]
Length = 374
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 112/372 (30%), Positives = 176/372 (47%), Gaps = 16/372 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++
Sbjct: 2 FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIANGDEILGEGFHYRAGEPHAEVFALKQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ V+GRG++ L +
Sbjct: 62 AGVRAKGATAYVTLEPCSHYGRTPPCAEALIKSGVSRVICAMVDPNPLVAGRGVEMLQKA 121
Query: 123 GIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + E A++ + K ++ LK+A S D +A S ITG ++
Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
V RAQ+ AIL TV+ADDP L R P+R+I+D +L
Sbjct: 182 DVQRHRAQAGAILSTSATVMADDPSLNVRWSELGTQIQDEYPQADVRQPIRVIIDSQNRL 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ ++ + ++ + DL L+ L G+ +
Sbjct: 242 TPAYQLFHLPGETILARAEIGNEDWPDSVSQWIIPTRENSQQLDLTLLMRKLAENGINHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
VE GA +A + ++LVD +ILY++ ++G SPL +
Sbjct: 302 WVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMDQVIDLNITDIRMV 361
Query: 347 GSDVCLEYIGKN 358
DV + K
Sbjct: 362 DCDVKITATVKR 373
>gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
[Oxalobacteraceae bacterium IMCC9480]
gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
[Oxalobacteraceae bacterium IMCC9480]
Length = 363
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 114/361 (31%), Positives = 180/361 (49%), Gaps = 12/361 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + + D + M+ AL ++ + +T+ NP V C++V+DG+V+G G T G HAE+QAL
Sbjct: 1 MKI-ANDQQGMALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQAL 59
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G GAT YVTLEPCSH+GR+PPCA II G+ RVV + DP+ V+G GL+
Sbjct: 60 ADAQARGNSVTGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLE 119
Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V + + + +R + + +K A S D + S IT
Sbjct: 120 RLRAAGIAVTTEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITA 179
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+++ H+ RA++ A+L GIGTV ADDP+LT R P RI++D ++ L ++I
Sbjct: 180 APARDDGHVWRARACAVLTGIGTVKADDPQLTVRAVA-TPRQPRRIVIDSRLEIDLQARI 238
Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ A + V + D + + DL L+ L R + L VE G
Sbjct: 239 LQDAPVWVVCAQADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAG 298
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ S + VD ++LY + +IG+ +P+ L + + G D+
Sbjct: 299 FKLNGSLLREGCVDELLLYLAPSLIGDAQGLFDLPA-LTSLSGKTGLVFHDVKQIGPDLR 357
Query: 352 L 352
+
Sbjct: 358 I 358
>gi|89073130|ref|ZP_01159669.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
sp. SKA34]
gi|89051083|gb|EAR56540.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
sp. SKA34]
Length = 374
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 113/372 (30%), Positives = 177/372 (47%), Gaps = 16/372 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++
Sbjct: 2 FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIAIGDEILGEGFHYRAGEPHAEVFALKQ 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI RV+ + DP+ V+GRG++ L +
Sbjct: 62 AGTRAKGATAYVTLEPCSHYGRTPPCAEALIKSGISRVICAMVDPNPLVAGRGVEMLQKA 121
Query: 123 GIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + E A++ + K ++ LK+A S D +A S ITG ++
Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-----------GLQEHSPMRIILDPHFKL 230
V RAQ+ AIL TV+ADDP L R + P+R+I+D +L
Sbjct: 182 DVQRHRAQAGAILSTSATVIADDPSLNVRWSELGTLIQDEYAQADVRQPIRVIIDSQNRL 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ ++ + ++ + DL L+ L G+ +
Sbjct: 242 TPAYQVFHLPGKTILARTMSGNEDWPDSVSQWIIPTRENNQQLDLTLLMRKLAENGINHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346
VE GA +A + ++LVD +ILY++ ++G SPL +
Sbjct: 302 WVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMNQTIDLNITDIRMV 361
Query: 347 GSDVCLEYIGKN 358
DV + K
Sbjct: 362 DCDVKITATVKR 373
>gi|90419410|ref|ZP_01227320.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336347|gb|EAS50088.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 383
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 163/368 (44%), Positives = 211/368 (57%), Gaps = 12/368 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
P + D RFM+AA+R+++ HVG T+TNPSVA LIV+D ++GRGVTA GG PHAE
Sbjct: 14 PATDADRRFMAAAIRYAQRHVGRTATNPSVATLIVRDDGTGPRIVGRGVTAIGGRPHAET 73
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL EAGE ARGATAYVTLEPC+H+GR+PPCA+ ++ GI RVV DPD RV GRG
Sbjct: 74 GALAEAGELARGATAYVTLEPCAHHGRTPPCAEALVTAGIARVVSAAADPDPRVDGRGHA 133
Query: 118 WLSQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L G+ V + + E + YLTR R I LK+A+S+D IG+ G G V ITG
Sbjct: 134 ILRAGGLSVTPRVMAAEAAAPISGYLTRHGAGRPEILLKMALSRDGRIGIRGGGQVKITG 193
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ Q HL+RA+ D IL+G GT DDP L CRL G+ + SP RI+LDP + D I
Sbjct: 194 AVADAQTHLVRARHDTILIGAGTAQEDDPRLDCRLPGMADRSPNRIVLDPRLRTPPDLTI 253
Query: 237 IKTALLAPVIIVTENDDPVLALA-------FRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+TA P +I T A L +LL L GV S
Sbjct: 254 ARTAAETPTLIATLASADPERRAALARQGVQFIACEADPETGRIALPELLEDLAATGVAS 313
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LVEGGA SF++S LVD +IL + + IGE G+ +P++ F VR FG D
Sbjct: 314 VLVEGGAETGASFLDSDLVDRLILVQGPVEIGEEGVRAPIDVATARCRFRLVREYRFGDD 373
Query: 350 VCLEYIGK 357
E+ +
Sbjct: 374 HWYEFERR 381
>gi|225874950|ref|YP_002756409.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
ATCC 51196]
gi|225792610|gb|ACO32700.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum
ATCC 51196]
Length = 380
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 181/364 (49%), Gaps = 10/364 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R+M AL +R ++S NP+V C++V++G ++G G Y HAE+ AL++AG
Sbjct: 13 NEDQRWMQRALALARLSKAVSSPNPAVGCVLVREGALVGEGYHDYSRKDHAEIVALKQAG 72
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++ARGATAYVTLEPC H GR+ PC + +I G+RRVV DP+ +VSG+GL+ L Q GI
Sbjct: 73 DQARGATAYVTLEPCCHTGRTGPCTEALIAAGVRRVVAATVDPNPKVSGQGLERLRQAGI 132
Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITGFI 178
+ ESE + A+ +TLK VS D I +TG
Sbjct: 133 ETTAGIGESEARALNDAFACSMRNGHPFVTLKAGVSLDGRIAPRPGSVETGKPYFLTGPQ 192
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ QV ++R + DA+L GI TVL DDP+L+ R + +R++LD +L LDSK+++
Sbjct: 193 ALAQVQVMRHEHDALLTGINTVLTDDPQLSDRTGLPRRRPLLRVVLDSALRLPLDSKLVR 252
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI----NIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
TA ++ + L ++L L + S+++E
Sbjct: 253 TAQQDVLVFCSFAPIARRQALESMGVRVEELPGKTRGRISLDEVLGRLHEMQILSVMLEA 312
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V S + L+D ++LY + +++G GGI + G D+
Sbjct: 313 GGMVNASALADGLIDKLVLYYAPVLLGTGGISLADGIEMQQLALQRPEWTQTGPDLRFSA 372
Query: 355 IGKN 358
++
Sbjct: 373 YLRD 376
>gi|329964682|ref|ZP_08301736.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
gi|328525082|gb|EGF52134.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057]
Length = 349
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 100/336 (29%), Positives = 159/336 (47%), Gaps = 14/336 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ + ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+
Sbjct: 2 NTEEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L
Sbjct: 62 EPALLKKSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLKDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFIS 179
G V + E E K + ++T +R +ITLK A S D I + V ++ ++
Sbjct: 122 GREVIVGVLEEECKSLIRRFITFHTLQRPYITLKWAESADKYIDLNRTNGSPVVLSSPLT 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH RA+ AI+VG T D+P L R + + + + +
Sbjct: 182 AMLVHKKRAEHKAIMVGTHTAWLDNPSLNIRHWSGKSPVRIVLDKKQSL----PASLHLF 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P ++ TE L I L +++ L RG+ SLLVEGG+ +
Sbjct: 238 DGSVPTLVFTEMPHKPLPN----VEYLPIDYQRDILPQIMETLYKRGIQSLLVEGGSILL 293
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
SFI++ + D I + + ++ G+ SP +
Sbjct: 294 QSFIDAGMWDEIFVEEAPNLL-HSGVKSPEISNKIP 328
>gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
39149]
gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC
39149]
Length = 353
Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats.
Identities = 114/364 (31%), Positives = 169/364 (46%), Gaps = 23/364 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
VS DA M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL
Sbjct: 3 SVSVDDA--MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG ARG TA VTLEPC H GR PC+ +I G+ RVV+ V DP+ SG +
Sbjct: 61 AQAGRRARGGTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASGGAATLRA 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ + +E + A+LT ++T K A + D A S+ IT ++
Sbjct: 121 GGLDVEVGVRAAEAEAGNVAWLTSMRRGWPYVTWKYAATLDGRSAAADGTSMWITSEAAR 180
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKII 237
VH LR DA++ G+GTVLADDP LT R P+R+++D + D+++
Sbjct: 181 IDVHALRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVVVDTFGRTPADARVR 240
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A V E DL LL L RGV + L+EGG
Sbjct: 241 DGAARTWVATAAEVG--------------AGPDGRVDLPALLAELHHRGVRAALLEGGPK 286
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A +F+ + LVD ++ Y + ++G G + + + G D+ +
Sbjct: 287 LAGAFLAAGLVDRVVGYVAPKLLGAGPTALADAGVTTIADAIDLEITDVTQVGPDLRITA 346
Query: 355 IGKN 358
+ +
Sbjct: 347 LPRK 350
>gi|124023623|ref|YP_001017930.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9303]
gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Prochlorococcus marinus str. MIT 9303]
Length = 368
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 115/358 (32%), Positives = 172/358 (48%), Gaps = 10/358 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AGE+A
Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H GR+PPC Q +I G+RRVVV + DPD RV+G G+ L G+ V
Sbjct: 74 GGTLVVTLEPCCHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E E A++ R R LK A+S D + S I+G +++ VH LR
Sbjct: 134 AVLEPEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARSWVHRLR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
Q DA++VG GTV ADDP LT R + E P R++L L + + +A ++
Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSRGHSDPE--PKRVVLSRSLDLPQQA-QLWDIAVAHTLV 250
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ LA + ++ + +LL L + +L E G A+A + +
Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPASEPLELLQALAQQDCNRVLWECGPALAAAALQQGC 310
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360
V + + + ++G +P ++ V G+D L+Y C
Sbjct: 311 VQELAVVVAPKLLGGLPARTPFDDLGFTSMKEVVGLASGSLQQLGADWLLQYELSKHC 368
>gi|319790138|ref|YP_004151771.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
HB-1]
gi|317114640|gb|ADU97130.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans
HB-1]
Length = 371
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 121/364 (33%), Positives = 177/364 (48%), Gaps = 13/364 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FM AL + G T NP+V ++V++G V+ G G PHAE ALE AG++
Sbjct: 3 DCYFMELALAEAYKGKGKTLPNPAVGAVVVREGRVVATGYHEAPGRPHAEAVALERAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPC+HYGR+PPC + II G++RVVV + DP+ V+ G++ L GI V
Sbjct: 63 AKGATLYVTLEPCNHYGRTPPCTEKIIASGVKRVVVGLRDPNP-VASGGIERLRGAGIEV 121
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + +LT RS + LK+A + D S ITG ++ VH
Sbjct: 122 TVGVLKERCFELVEDFLTLVTCGRSFLHLKLASTLDGATADRDGRSKWITGGEARRLVHR 181
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR+ +A++VGIGTVLADDP LT R E P+ +++DP KL ++ +++K V
Sbjct: 182 LRSYHNAVMVGIGTVLADDPLLTVREFP-VEKQPIAVVVDPSLKLPVNCRLVKERAAELV 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG------VTSLLVEGGAAVA 299
++ + + + + +L G V SLL EGGA +A
Sbjct: 241 VVTAQESLLSYKASLLQDLGVRLLPVFGGEGRLDLEEALNGLKEEFSVYSLLCEGGARLA 300
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYI 355
S + LVD + L+ + +G NF GSD L+
Sbjct: 301 GSLLVQGLVDRLSLFYAPKALGGRDFVPIFGCESRSLEEAFNFWLFECGKVGSDALLKLY 360
Query: 356 GKNL 359
+ L
Sbjct: 361 SREL 364
>gi|182678211|ref|YP_001832357.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634094|gb|ACB94868.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 401
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 137/386 (35%), Positives = 190/386 (49%), Gaps = 32/386 (8%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D +M+ AL S+ +G T+ NPSV +IVKDG ++GRG T GG PHAE +AL
Sbjct: 19 PDSETDTHYMAEALALSQQGLGRTAPNPSVGAIIVKDGKIVGRGWTQPGGRPHAETEALA 78
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EAG+ ARGAT YVTLEPCSH+G +PPCA II G+ RVV ++DPD RVSGRG + L +
Sbjct: 79 EAGDAARGATLYVTLEPCSHFGVTPPCASAIIAAGVARVVCALEDPDPRVSGRGYRMLRE 138
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS- 179
GI V + E+E + ++ R +R +TLK+A++ D +
Sbjct: 139 AGIAVTHGVLEAEARRANLGHIRRVQAQRPMVTLKLAMTADGFVASTAPREGQAPRLKIT 198
Query: 180 ----KNQVHLLRAQSDAILVGIGTVLADDPE----------LTCRLNGLQEHSPMRIILD 225
VH +RAQ DAI++GIGT LADDP + G P RI+LD
Sbjct: 199 GAAANEHVHRMRAQHDAIMIGIGTALADDPMLTVRLSGQEEMGKAEMGKVAARPRRIVLD 258
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI-------IYCDCRDLKKL 278
H +L L S +++TA P +++T +D A+A ++ + DL
Sbjct: 259 SHLRLPLQSHLVQTAADYPTLVLTRDDASAEAMARLREASVVVETLESAQSTPSLDLSAA 318
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPLEEG 332
L L G+T + EGG VA S I D +IL S ++G G + L
Sbjct: 319 LQRLASLGLTRIFSEGGPRVAESLIGQHAADEVILLESPAILGAGVEGLSPRARAILGNL 378
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGKN 358
L + D Y +
Sbjct: 379 TL---YRPAETRMIEEDRLTRYERID 401
>gi|198273955|ref|ZP_03206487.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
gi|198273033|gb|EDY97302.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135]
Length = 346
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 110/339 (32%), Positives = 171/339 (50%), Gaps = 14/339 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M ++ +R + + NP V +IV+DG +IG G G HAEV A+
Sbjct: 2 TIDEKYMRRCIQLARNGICHAAPNPMVGAVIVRDGKIIGEGYHVRCGEGHAEVNAIASVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+E + AT YV+LEPCSHYG++PPCA II GI RVVV DP V+GRG+Q L
Sbjct: 62 DESLLKDATIYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCVDPFSLVAGRGIQKLRDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFIS 179
GI V + E E + + A++T ++KR +ITLK A S D + + +V ++ +S
Sbjct: 122 GIEVTVGVLEKECRELIRAFVTFNLKKRPYITLKWAQSADGFLDIRREDGNAVRLSTPLS 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH +RA+ AILVG T D+P LT R +P+R+++D L +
Sbjct: 182 TLAVHKMRAEQKAILVGRRTAQLDNPSLTVR--EWYGQNPLRLVIDRQLTLPPHLHLFDG 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ V E A + + L +++ +L + + +LLVEGG+
Sbjct: 240 STPTLVFTEKEKA------ATQNLTYVTLDFGQNILPQIMQVLYEQKIQTLLVEGGSQTL 293
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+F+ L D + +++ + GIP+PL E F
Sbjct: 294 QAFLEQGLWDEAFIEHARVTL-HDGIPAPLLPHGQESRF 331
>gi|332157888|ref|YP_004423167.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
gi|331033351|gb|AEC51163.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2]
Length = 349
Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 170/366 (46%), Gaps = 25/366 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++M AL +R G + NP V +IVK+G VIG+G Y G HAEV A+E+A
Sbjct: 2 KEDEKYMKLALELARLGEGRVNPNPMVGAVIVKNGKVIGKGHHEYFGGKHAEVNAIEDAK 61
Query: 65 EE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
RGAT YVTLEPC+H+G+ PPC II+ GI RVVV DP+ V+G G++ L +
Sbjct: 62 RNGYSVRGATMYVTLEPCAHWGKQPPCVDRIIKEGISRVVVATLDPNPMVNGEGVKRLME 121
Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + E Y + +K+A++ D I S IT ++
Sbjct: 122 AGIEVEVGILKEEAEKLNEIYFKYIKTSMPFVAIKLALTLDGFIATKSFSSKWITNEKAR 181
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+V +R + AI+VG TV D+P L CR+NG ++ K+ + T
Sbjct: 182 LKVQEIRRRFMAIMVGANTVTIDNPRLNCRVNGCRD------------KVKVILDRHGTT 229
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ V + ++ K N K++L IL G+ S+L+EGG +A
Sbjct: 230 ANRKDLNVFKEGKVIVFTESDKSWDNAKVIKETSPKRILEILGKMGIDSVLIEGG-RIAC 288
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
F+ D + L+ +IG G P +++ L + + FG +E
Sbjct: 289 QFLP--FADKLYLFYGNKLIGNGISPFECLEVDDVNLALKVELLNIETFGDSYLVEARP- 345
Query: 358 NLCLQE 363
C +E
Sbjct: 346 --CSRE 349
>gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58]
Length = 372
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 102/332 (30%), Positives = 156/332 (46%), Gaps = 6/332 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ T NP V C++VK+G ++ G Y G PHAE A+ +
Sbjct: 4 FSEQQQLFMRRAIEIGERGRITTPPNPWVGCVLVKNGKILSEGYHEYPGGPHAEEIAIRK 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A GA Y++LEPCSHYG+ PPC +I+ + V + + DPD RVSG+G++ L
Sbjct: 64 AHVSLEGAQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNV 123
Query: 123 GIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V E+ + L YL ++ + LK A S D + S IT +++
Sbjct: 124 GIRVHVGLEEARARKSLQPYLYQRSSCSPWVVLKSAASIDGQVADRNSQSQWITCPEARH 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKT 239
V +RA S A++VG GTV+AD+P+LT R P+RI+LD ++ +S++
Sbjct: 184 DVGFIRACSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIVLDSSGRVPKESQVFHL 243
Query: 240 ALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L + DL +++ +L + +LVEGGA
Sbjct: 244 GGEVLYVTTKRCPSQHLQYLEALGVEIACVKASSSGVDLHEVMRLLANKHFLQVLVEGGA 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
V F+ L ++IILY ++G+ P
Sbjct: 304 TVHTEFLKHHLANAIILYYGPKILGDQKKPLF 335
>gi|300769800|ref|ZP_07079680.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
ATCC 33861]
gi|300763251|gb|EFK60067.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum
ATCC 33861]
Length = 350
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 107/367 (29%), Positives = 170/367 (46%), Gaps = 26/367 (7%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + R+M L + G S NP V +IV + +IG G T+ G PHAEV A+
Sbjct: 1 MNMQ---ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAI 57
Query: 61 EEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
++ ++ + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+
Sbjct: 58 QQVKDQYPDSADRLLEESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVN 117
Query: 113 GRGLQWLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
G+GL L + GI V+ + + + TR + R +I LK A + D +
Sbjct: 118 GKGLGILQEAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYIILKWAETADGYMAKNTDEQ 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
I+ SK VH R++ DAILVG T L D+P LT R + +P R+++D +
Sbjct: 178 AWISNEASKQLVHKWRSEEDAILVGTRTALIDNPSLTVR--EWEGSNPKRVLVDKQLSVP 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ I V + D I + D + +L L + S++
Sbjct: 236 ETAAIFSEDADTIVFNAVKTDWQGRIK-----YIELENYDLYLPQNILYQLYLMDIQSVI 290
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+EGGA FI++ L D + +S V E GI +P+ EG L++ DV
Sbjct: 291 IEGGAKTLQHFIDAGLWDEARVIKS-KVFWEDGIKAPVIEGELKEQHTVAS-----DDVY 344
Query: 352 LEYIGKN 358
L + KN
Sbjct: 345 LI-VKKN 350
>gi|254556365|ref|YP_003062782.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
plantarum JDM1]
gi|254045292|gb|ACT62085.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
plantarum JDM1]
Length = 355
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 6/353 (1%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR
Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G +V
Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + Y V++R ITLK A++ D I ++ S LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+Q AIL+G T+ DDP+LT RL P+R+++ ++L+ ++++ ++
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTA-MVQPPVRLVVLNTSTVALNHRLVQDGQAPTWLL 243
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ L + + + V +G SLLVEGGA + F+ + L
Sbjct: 244 CRQAAASDDQLR--NSPNVHVLIGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
+D + Y + ++IG G+P+ + F G+++ L + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354
>gi|242278131|ref|YP_002990260.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
2638]
gi|242121025|gb|ACS78721.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM
2638]
Length = 377
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 19/369 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D RFM+ A+ + T+ NP+V ++V+DG ++ G + G HAE + + +A
Sbjct: 8 DERFMARAVELAIRGRNRTAPNPTVGAVMVRDGQIVAEGYHMFCGGLHAERECIADAKAK 67
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + T YVTLEPC+H+G++PPC + I+E I +VV DP+ + +G G+++L KG
Sbjct: 68 GVDMSKCTMYVTLEPCNHHGKTPPCTEGILEASIPHIVVGTRDPNPKAAG-GIEYLESKG 126
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ VD+ + E + K + +L Q + R++ LK+A + D I A ++ S +
Sbjct: 127 VRVDQGVLEEQCKDLISDFLCWQFKDRAYSILKLACTVDGKIAGATGAQEAVSCPESFHD 186
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTA 240
V LR+ A++VG T+ D+P L CRL+ L E +++ + + D + T
Sbjct: 187 VQHLRSMVGAVIVGGNTLREDNPSLNCRLDPLPEGFSQPKAVVVTNNLPQNHDEYTLTTT 246
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLVE 293
A I T + A KN I +K + V L E
Sbjct: 247 RAADTIFWTSAEQAATKTASELKNKGIEVLPLPSNEKGLILEKGFTMLREKHNVLRTLCE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYL----EKNFMCVRRDYFGS 348
GG +A S LVD ++Y++ ++G G P+ + + R + G
Sbjct: 307 GGGRLACSLAEQGLVDEFVMYQAPRILGNVDGRPNFAGSDNVLISEAMDLRISRVEQSGR 366
Query: 349 DVCLEYIGK 357
D+ + + +
Sbjct: 367 DLKIVFKPE 375
>gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
307]
gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
307]
Length = 370
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 125/357 (35%), Positives = 178/357 (49%), Gaps = 15/357 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ G +
Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GID 58
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GAT+YVTLEPC+H+G++PPC +I + RVV+ DPD RV+G+G+ L GI V
Sbjct: 59 ADGATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGIDV 118
Query: 127 DRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ A R E R +TLK+A S D I A S ITG ++ +VH
Sbjct: 119 ITGVREHEAREDMAGFLLRVTENRPFVTLKLASSFDGRIATATGQSKWITGPDARRKVHA 178
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+RA DA+LVG GTV ADDP LT R G P+R++ + + ++ T AP+
Sbjct: 179 MRAGHDAVLVGAGTVRADDPTLTVRNTGA-VRQPVRVVASRRLDI-GAANLLATLGDAPL 236
Query: 246 IIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ D A K + D ++ L G+T + EGG ++A S +
Sbjct: 237 WLCHGANVDAQKWADLGAKTLACDLQGRQIDPVDMMHKLAASGLTRVFCEGGGSLAASLL 296
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD I+ + + I +G G PS L+ F + G+D+ +
Sbjct: 297 GAGLVDEIVGFTAGIALGAEGTPSIGALGLDVLDDAPRFDLIETTQVGADIMHRWHR 353
>gi|260642492|ref|ZP_05859416.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
17565]
gi|260621884|gb|EEX44755.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM
17565]
Length = 373
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 110/350 (31%), Positives = 168/350 (48%), Gaps = 18/350 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 32 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGRIIGEGYHVRCGEAHAEVNAIRSVKDES 91
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 92 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLQNAGRE 151
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E + ++T +R ITLK A S D I V ++ ++
Sbjct: 152 VIVGVLEEECLHLIRRFITFNTLRRPFITLKWAESADQFIDIERIDGNPVLLSSPLTSML 211
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++ AI+VG T L D+P LT R +P+RI+LD + L D +I
Sbjct: 212 VHKKRAENTAIMVGRRTALLDNPSLTVR--NWYGRNPIRIVLDRNLSLPNDLQIFNG--E 267
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P ++ TE + P ++ L R + SLLVEGG+ + SF
Sbjct: 268 VPTLVFTEKEHPEEKSVSYITIDFGHNPLK----LIMEELYQRNIQSLLVEGGSQLLQSF 323
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
I++ L D + + + G+ SP + NF +++FG +
Sbjct: 324 IDNELWDEAYIEKCPKRL-YSGVKSP----EISNNFSYSTKEHFGRQIWY 368
>gi|308180337|ref|YP_003924465.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308045828|gb|ADN98371.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 355
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 172/353 (48%), Gaps = 6/353 (1%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR
Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G +V
Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + Y V++R ITLK A++ D I ++ S LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+Q AIL+G T+ DDP+LT RL P+R+++ ++L+ ++++ ++
Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTA-MVRPPVRLVVLNTSTVALNHRLVQDGQAPTWLL 243
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ L + + + V +G SLLVEGGA + F+ + L
Sbjct: 244 CRQAAASDDQLR--NSPNVHVLIGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
+D + Y + ++IG G+P+ + F G+++ L + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354
>gi|300767117|ref|ZP_07077029.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300494936|gb|EFK30092.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 355
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 171/353 (48%), Gaps = 6/353 (1%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR
Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127
GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G +V
Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + Y V++R ITLK A++ D I ++ S LR
Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+Q AIL+G T+ DDP+L RL P+R+++ ++L+ ++++ ++
Sbjct: 185 SQFQAILIGERTLTIDDPQLAVRLTA-MVQPPVRLVVLNTSTVALNHRLVQDGQAPTWLL 243
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ L + + + V +G SLLVEGGA + F+ + L
Sbjct: 244 CRQAAASDDQLR--NSPNVHVLIGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359
+D + Y + ++IG G+P+ + F G+++ L + K +
Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354
>gi|224536352|ref|ZP_03676891.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522049|gb|EEF91154.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus
DSM 14838]
Length = 348
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 100/326 (30%), Positives = 151/326 (46%), Gaps = 14/326 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ E
Sbjct: 7 EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGKAHAEVNAIRSVKETS 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 67 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 126
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182
V + E E + + ++T R +ITLK A S D I + V ++ ++
Sbjct: 127 VIVGVLEDECRHLIKRFITFHTLHRPYITLKWAESADGFIDLCRTEGNPVILSTPLTSML 186
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ AILVG T D+P L R + + I +L L
Sbjct: 187 VHKKRAEHSAILVGTRTAKLDNPSLNVRNWYGRSPIRLVIDRKQSLSPTLHLFDGSVLTL 246
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
A I L +++ IL RG+ SLLVEGG+ + SF
Sbjct: 247 VFT--------EHFHDALPNVEYLPIDFQQDILPQIMQILYERGIQSLLVEGGSTLLQSF 298
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328
I++ L D + + S + G+ +P
Sbjct: 299 IDAGLWDEVYVEESPRSL-ISGVKAP 323
>gi|217978262|ref|YP_002362409.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
gi|217503638|gb|ACK51047.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2]
Length = 370
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 129/368 (35%), Positives = 194/368 (52%), Gaps = 12/368 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D RFM+AA+ +R +G+ + NP+V LIVKDG+V+ RG T GG PHAE +AL
Sbjct: 1 MSQVDADERFMAAAIALARRGLGVCAPNPAVGALIVKDGVVLARGWTQAGGRPHAEAEAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+++RG+T YVTLEPCSH+G++PPCA+ +I GI RV ++DPD RV+GRG + L
Sbjct: 61 RQAGDKSRGSTLYVTLEPCSHHGKTPPCAEAVIASGIARVASAIEDPDPRVAGRGHELLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+IV + ++ + + R + R ITLK+A++ D + +
Sbjct: 121 AAGLIVRTGVCAQAALRANLGHVLRVTQNRPLITLKLAMTADGFVAGGPNEPRLSITGEA 180
Query: 180 KN-QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
N VHL+RA DAIL+G+GT LADDP LT RL GL++ P+RI+LD ++S S+++
Sbjct: 181 ANGAVHLMRAMYDAILIGVGTALADDPLLTVRLPGLEQRRPLRIVLDSALRISPASRLVA 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL------KKLLTILVGRGVTSLLV 292
TA P +I+ P A + D + L +L RG+T +
Sbjct: 241 TARSHPTLIIAGEAAPAANEARLVAENVAVARVPTDGGGRLDLRAALGLLASRGLTRIFC 300
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348
E G +A + + D II+ SQ + G+ + + V + G
Sbjct: 301 EAGPTLAEALLREDAADDIIMLTSQKRLARPGLCGFTAERINALEDGSRYRLVEQRAIGD 360
Query: 349 DVCLEYIG 356
D+
Sbjct: 361 DLLTRRER 368
>gi|326335510|ref|ZP_08201697.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692276|gb|EGD34228.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 360
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 109/360 (30%), Positives = 153/360 (42%), Gaps = 22/360 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D ++M L +R +G T NP V +IV G +IG G G PHAEV A+
Sbjct: 1 MIMI-IDEKYMQRCLFLARKAMGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAI 59
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ + +T YV LEPC H+G++PPCA IIE GI R+V+ D +V+G+G+Q
Sbjct: 60 TSVRDKSLLKESTLYVNLEPCVHFGKTPPCADLIIEKGIPRIVIGCTDIYSKVAGKGIQR 119
Query: 119 LSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPI 174
L Q G V + + + T +KR +I LK A ++D I V I
Sbjct: 120 LQQAGREVVLDVLEQESQALNIRFFTFHSQKRPYIILKWAQTRDGFIAPQQRKNKAPVWI 179
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T S+ HL RAQ AILVG TV+ D+P LT R + I SL
Sbjct: 180 TNDFSQQLTHLWRAQEGAILVGKSTVVQDNPSLTTRYWVGNTPLRIVIDASHSLPDSLAV 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
P ++ T + ++ L + V SL+VEG
Sbjct: 240 FQKM-----PTVVFTSKEMTDTFNVSFVPFNPSFSMPK----QVCNYLYEKNVQSLIVEG 290
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V FIN RL D ++ G+ +PL + V R D Y
Sbjct: 291 GTQVLQQFINERLWDEARIFIGNKRF-SEGVKAPLLQDG-----NLVERQDIQGDSLFVY 344
>gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
Length = 375
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 168/361 (46%), Gaps = 15/361 (4%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
FM+ AL +R T NP V C++V +G VIG+G T G PHAEV AL +A G
Sbjct: 10 FMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGH 69
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GATA+VTLEPC+H+GR+ PC + GI RVV + DP+ V+G+G + L G+
Sbjct: 70 SVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVA 129
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ E + + +R V K + LK A S D G+ S IT ++ H
Sbjct: 130 VEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGH 189
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L G+GTVL DDP L RL P +I+D + ++I
Sbjct: 190 AWRARASAVLTGVGTVLEDDPRLDVRLVET-TRQPHVVIVDSQLQTPPGARIFMAGRPVW 248
Query: 245 VIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ +++ AL R DL +L L R V L VE G + S
Sbjct: 249 IYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNGSL 308
Query: 303 INSRLVDSIILYRSQIVIGEG-----GIPS--PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ LVD +++Y + +IG+G GI + PL + + G D+ +
Sbjct: 309 LREGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTIERIGPDLRIVAR 368
Query: 356 G 356
Sbjct: 369 V 369
>gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
Length = 383
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 170/367 (46%), Gaps = 20/367 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
D FM A+ + G TS P+V +IV+D VIGRG T+ PHAE+ AL EAG
Sbjct: 3 DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDNRVIGRGATSPPYGPHAEIHALNEAGAT 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124
A GA Y TLEPC +PPC + II GIRRV++ DP+ RVSGRG+ L + GI
Sbjct: 63 AASGADLYTTLEPCCIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAGIN 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V + + E + + T + R ++T K A++ D + + I+G ++ VH
Sbjct: 123 VVTGIAQQETSALIRPFATYITQGRPYVTAKWAMTLDGKLATHTGDAHWISGPAARTWVH 182
Query: 185 LLRAQSDAILVGIGTVLADDP-------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
LR + DAI++G GT AD+P E P+RI+L + KL ++
Sbjct: 183 QLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKRTPRQDPLRIVLSSYGKLGSHLHLL 242
Query: 238 KTALLAPVIIVTE------NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L ++ + + + + DL L IL +G+ LL
Sbjct: 243 QEQLAPGTCVMVSETSSLQQREDLRQRGVQVIEVPANKTGQVDLVAALNILAQKGIMHLL 302
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
+EGG+ + + L+D + + + +IG G PSP+ L V
Sbjct: 303 LEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPSPIGGSGLAVMQHALRLQGVSIQTI 362
Query: 347 GSDVCLE 353
D+ +E
Sbjct: 363 DEDLLIE 369
>gi|83951487|ref|ZP_00960219.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
gi|83836493|gb|EAP75790.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM]
Length = 364
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 134/364 (36%), Positives = 192/364 (52%), Gaps = 11/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S D M ALR R +G NP+V C+IV ++GRG TA GG PHAE QAL E
Sbjct: 1 MSEQDIHHMREALRLGRSAMGSAWPNPAVGCVIVAGDQIVGRGATAPGGRPHAEPQALAE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGATAYVTLEPC+H+G++PPCA+ +I+ G+ RVVV V D D RVSGRG++ L +
Sbjct: 61 AGAAARGATAYVTLEPCAHHGKTPPCAEVLIKAGVARVVVAVGDSDPRVSGRGIEMLRKA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + E E + L + R E R +TLK+A S D I A S ITG ++
Sbjct: 121 GIEVVQGVLEDEARTDLAGFFLRIEEGRPWVTLKLASSFDGRIATASGHSQWITGPEARQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH RA+ DA++VG GT AD+P LT R + ++ + L S++ +TA
Sbjct: 181 RVHEFRARHDAVMVGAGTARADNPMLTVRGLDVPRQPVRVVVS-RRLDVPLMSELARTAG 239
Query: 242 LAPVIIVTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PV + D + ++ ++ +L L RG+T + EGG
Sbjct: 240 EVPVWMCHGPDADKSLREAWQGLGAELVECRLHGRQLEIGSVLQALGERGLTRVFCEGGG 299
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
A+A S +++ LVD +I + + +VIG G+P L F + G D+
Sbjct: 300 ALAASLLSAGLVDELIGFTAGVVIGAEGLPGVGAMGLARLEEAPRFRLIEAAAVGGDIMH 359
Query: 353 EYIG 356
+
Sbjct: 360 RWHR 363
>gi|317474402|ref|ZP_07933676.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
1_2_48FAA]
gi|316909083|gb|EFV30763.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii
1_2_48FAA]
Length = 347
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 103/351 (29%), Positives = 167/351 (47%), Gaps = 15/351 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E
Sbjct: 4 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + K + ++T R +ITLK A S D I P+ +
Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + +++ + +GT A+ + + Q SP+RI++D +LS + ++
Sbjct: 184 VHKRRAEHSAIMVGTHTAELDNPSLTVRNWQGQSPVRIVIDRQQRLSPSLHLFDDSIRTL 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + AF +I L +++ L +G+ SLLVEGG+ + SFIN
Sbjct: 244 VFTGQPHA------AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSFIN 297
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ L D I + S + + G+ +P + V YFG + YI
Sbjct: 298 AELWDEIFVEESPLKLFS-GVKAPEIGNKIPY----VNEQYFGRNFR-HYI 342
>gi|330996373|ref|ZP_08320256.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
YIT 11841]
gi|329573231|gb|EGG54845.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila
YIT 11841]
Length = 358
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 99/330 (30%), Positives = 157/330 (47%), Gaps = 8/330 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+ G
Sbjct: 2 TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRSVG 61
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L +
Sbjct: 62 NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQEA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFI 178
GI V + E+E ++T +R +ITLK A S D + P
Sbjct: 122 GIEVTVGVLEAECLALNRRFMTFHTHRRPYITLKWAESADGFMDGLRTDYEKEKPYAFST 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ + R ++ + +G A L SP+R+++D + L +
Sbjct: 182 PYTRMLVHRCRAGHQAILVGRQTALADNPLLNLRLWPGKSPLRLVVDRNGSLPKHLALFN 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
V + + P+ + + + + L + V SLLVEGG +
Sbjct: 242 DGAETRVYLDALSVHPLYGEQAGVTCVRLDFSRDILPQVLDDLYH-LSVQSLLVEGGRRL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
SFI++ L D I + +S + + + G+PSP
Sbjct: 301 LESFISAGLWDEIRVEQSPVWL-KEGVPSP 329
>gi|298386833|ref|ZP_06996388.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
gi|298260507|gb|EFI03376.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14]
Length = 345
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 105/356 (29%), Positives = 169/356 (47%), Gaps = 19/356 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++
Sbjct: 4 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E + + ++T R ITLK A S D+ I V ++ ++
Sbjct: 124 VTIGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ +
Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEVP 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + I L +++ +L + + SLLVEGG+ + SF
Sbjct: 242 TIVFTAE------KHPDKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I++ L D + + + + G+ +P + NF +F + Y+ +
Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW-HYVFEK 345
>gi|325283811|ref|YP_004256352.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
MRP]
gi|324315620|gb|ADY26735.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus
MRP]
Length = 376
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 117/358 (32%), Positives = 178/358 (49%), Gaps = 21/358 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEE 62
D FM+ AL + +G TS NP V C++V+ G V+GRG G PHAEV AL E
Sbjct: 8 DEDFMAQALAEAARGLGRTSPNPPVGCVLVQPNGSGGEVVGRGFHPRAGEPHAEVFALRE 67
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV DP+ +V+GRGL+ L
Sbjct: 68 AGERARGATAYVTLEPCSHFGRTPPCADALMAAGVARVVVAAGDPNPQVNGRGLERLRAA 127
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCG-----SVPITG 176
GI V + + A ++ R + K A++ D + G + +TG
Sbjct: 128 GIAVQTGVLEAQAVRQQAGFRARMLLGRPFVIYKYAMTLDGKVAALEEGGGSEANGAVTG 187
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ +V R ++DAI VG+ T+L DDP+LT R + P +I D + ++
Sbjct: 188 PEARARVMGWRNEADAIAVGVDTLLTDDPQLTTR-GVVGGRDPRPVIFDRQGRTPPTARA 246
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + A A + + L++ L L GV++LL+EGG
Sbjct: 247 LRPGAVVVT--------APGAEAPALADAGAVLLPAATLEEALRGLHDLGVSTLLLEGGP 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+A +F S L+D + + + ++G G P PL + G+D+ +
Sbjct: 299 TLASAFAESDLIDEVRAFIAPKLLGAGLSPLAGPLRRMNAAGMLDMYALEQLGADILV 356
>gi|253571299|ref|ZP_04848706.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
gi|251839252|gb|EES67336.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6]
Length = 345
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 105/356 (29%), Positives = 169/356 (47%), Gaps = 19/356 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++
Sbjct: 4 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E + + ++T R ITLK A S D+ I V ++ ++
Sbjct: 124 VTVGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ +
Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEVP 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + I L +++ +L + + SLLVEGG+ + SF
Sbjct: 242 TIVFTAE------KHPDKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I++ L D + + + + G+ +P + NF +F + Y+ +
Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW-HYVFEK 345
>gi|319955752|ref|YP_004167019.1| riboflavin biosynthesis protein ribd [Cellulophaga algicola DSM
14237]
gi|319424412|gb|ADV51521.1| riboflavin biosynthesis protein RibD [Cellulophaga algicola DSM
14237]
Length = 351
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 102/366 (27%), Positives = 166/366 (45%), Gaps = 24/366 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + ++ ++ ++ +G T+ NP V +IV + +IG G T+ G PHAEV A+
Sbjct: 1 MKI---HEFYILRCIQIAQNGLGTTAPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAI 57
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ AT YVTLEPCSH+G++PPCA II+ I+ VVV + DP +V+G+G+Q
Sbjct: 58 NAVADKNLLVNATIYVTLEPCSHHGKTPPCADLIIKHKIKNVVVGLLDPHEKVAGQGIQK 117
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGS 171
L G V + E+E + +LT Q + R +I LK A + D I
Sbjct: 118 LKDAGCTVTVGVLENECREHHKRFLTFQEKNRPYIILKWAETADGFIAPELALRTKEKQP 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
IT S+ VH RA+ AILVG TVLAD+P+L R +P RIILD + K++
Sbjct: 178 FWITNTYSRQLVHQWRAEEQAILVGTHTVLADNPKLDVR--SWTGKNPTRIILDRNLKIN 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ ++ + + + + L + + S++
Sbjct: 236 TTFHVVDKSIKTIIFTEILEESRYQSEVIYIPIDFKKNIASQICTAL----YLQNIQSVI 291
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+EGG +FI L D +++ + + G+ +P+ D+
Sbjct: 292 IEGGLQTLQTFIAENLWDEARIFKGNSLF-KRGVKAPIIATR-----TLKETRNIEKDIL 345
Query: 352 LEYIGK 357
Y
Sbjct: 346 NLYYND 351
>gi|182415465|ref|YP_001820531.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
gi|177842679|gb|ACB76931.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1]
Length = 389
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 104/365 (28%), Positives = 153/365 (41%), Gaps = 15/365 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
++ FM AL +R G T NP V LIV++G V+ G A G PHAE AL
Sbjct: 6 TNNHETFMRRALEVARKGWGDTHPNPMVGALIVEEGRVVAEGFHAQDGGPHAERLALLNR 65
Query: 64 GEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G+ R GAT YVTLEPCS GR+ C II GI++VVV DP+ SG+G + L
Sbjct: 66 GKPPRAGATMYVTLEPCSTSGRTGACTDAIISSGIKQVVVGATDPNPEHSGKGFEVLRAA 125
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + L+ + + + + K AV+ D + S ITG ++
Sbjct: 126 GVEVIHGVLERECTDLNLIFNHWIHRATPLIASKSAVTLDGRMACRTGESKWITGEPARA 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK----LSLDSKII 237
VH+ R AI VG GTV D+P LT R+ G E P+R + D + L
Sbjct: 186 NVHVWRRLFPAIAVGAGTVFKDNPRLTARVEGQPEWCPIRFVFDGLLRTVVDKQLPKLYT 245
Query: 238 KTALLAPVIIVTEN----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
V++ T + L + + + + V V +L E
Sbjct: 246 DEFHSRTVVVTTPHGGLGYVRKLREMGVQVWVIPSPTQRVPMSEFRKKCVEERVAGVLFE 305
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348
GGA + + + +D + +YR+ ++ + EK VR + G
Sbjct: 306 GGAQLVSHLLQEKQLDYLFIYRAPVLFADDRAKPMFNGLRTEKPVNGVRLSDVRNEVHGD 365
Query: 349 DVCLE 353
D
Sbjct: 366 DTLTR 370
>gi|163733978|ref|ZP_02141419.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
149]
gi|161392514|gb|EDQ16842.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och
149]
Length = 366
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 11/358 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
R+M+ AL R +G NP+V C+IVK+ V+GRG T GG PHAE QAL +AG +AR
Sbjct: 6 RYMALALSLGRRGLGRVWPNPAVGCVIVKEDRVVGRGWTQPGGRPHAETQALAQAGAQAR 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GA YVTLEPC+H+G++PPCA +++ G+ RV DPD RV G G + L Q GI V
Sbjct: 66 GADVYVTLEPCAHHGKTPPCAAALVKAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E++ + + R R +TLK+A S D I S ITG ++ VH LR
Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGRQARRVVHALR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A+ DA++VG GT DDP LT R + P R+++ + L + +TA PVI+
Sbjct: 186 ARHDAVMVGAGTARKDDPALTVR-DLGTAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244
Query: 248 VTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
D + + D ++ L G G+T + EGG+A+A S
Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAAKGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD +I + + + IG G+PS L + GSD+ +
Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSNLSRAPRYGLRSTQRIGSDIMHIWER 362
>gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
Length = 377
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 112/368 (30%), Positives = 163/368 (44%), Gaps = 16/368 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL 60
P S D M AL+ + + TS NP V C++V G +IG+G T G PHAEV AL
Sbjct: 7 PASPADL--MQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMAL 64
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G GATAYVTLEPCSH+GR+ PC ++E GI RVV + DP+ V+G+G +
Sbjct: 65 RDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFE 124
Query: 118 WLSQKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L G+ V+ + + + +R + +K A S D + S IT
Sbjct: 125 RLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITS 184
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H RA++ A+L GIGT+LADDP L R P I+D H + ++
Sbjct: 185 PEARADGHAWRARACAVLTGIGTILADDPRLDVRE-AETPRQPHLAIIDSHLQTPPGARF 243
Query: 237 IKTALLAPVIIVTENDDPVL-----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ +I D A L + R V L
Sbjct: 244 FEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELH 303
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348
VE GA + + + +RLVD I+LY + ++G G + P D G+
Sbjct: 304 VEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGA 363
Query: 349 DVCLEYIG 356
D+ + G
Sbjct: 364 DLRIIARG 371
>gi|326538505|gb|ADZ86720.1| riboflavin biosynthesis protein RibD [Brucella melitensis M5-90]
Length = 373
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 165/356 (46%), Positives = 224/356 (62%), Gaps = 7/356 (1%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE AR
Sbjct: 17 RFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEAAR 76
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 77 GATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEVVP 136
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+LR
Sbjct: 137 GILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHILR 196
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
AQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ +
Sbjct: 197 AQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPLWV 256
Query: 248 VTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ P A + + L +LL L +G+ S+LVEGGA VA SF
Sbjct: 257 ACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAKSF 316
Query: 303 INSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 317 LDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|218131999|ref|ZP_03460803.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
gi|217985875|gb|EEC52215.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697]
Length = 347
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 103/351 (29%), Positives = 167/351 (47%), Gaps = 15/351 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E
Sbjct: 4 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E + K + ++T R +ITLK A S D I P+ +
Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + +++ + +GT A+ + + Q SP+RI++D +LS + ++
Sbjct: 184 VHKRRAEHSTIMVGTHTAELDNPSLTVRNWQGQSPVRIVIDRQQRLSPSLHLFDDSIRTL 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + AF +I L +++ L +G+ SLLVEGG+ + SFIN
Sbjct: 244 VFTGQPHA------AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSFIN 297
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ L D I + S + + G+ +P + V YFG + YI
Sbjct: 298 AELWDEIFVEESPLKLFS-GVKAPEIGNKIPY----VNEQYFGRNFR-HYI 342
>gi|114777001|ref|ZP_01452021.1| RibD [Mariprofundus ferrooxydans PV-1]
gi|114552522|gb|EAU54982.1| RibD [Mariprofundus ferrooxydans PV-1]
Length = 379
Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 107/364 (29%), Positives = 161/364 (44%), Gaps = 13/364 (3%)
Query: 1 MP--VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M + + M A+ ++ G T NP V ++V G V+G G G PHAE
Sbjct: 17 MSEDMPTQHEALMLQAIELAQRGGGTTHPNPRVGAVVVNRGEVVGVGWHKRAGGPHAEAV 76
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL+ AG+ ARG T YVTLEPCS +GR+P C + I GI+ VV DP+ ++SG G +
Sbjct: 77 ALQVAGKRARGGTLYVTLEPCSAHGRTPACTEAIRRAGIKHVVYASPDPNPQMSG-GHKI 135
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI V + E L+ R ++ K A+S D + S I+G
Sbjct: 136 LEAAGISVTAGVLREQAEALNIPFFHYLRTGRPYVIAKAAISLDGKMATRTHHSQWISGE 195
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S+ LRA SDAI+VG GT+ D+P LT R P+R+++ +
Sbjct: 196 ASRLHAQGLRAASDAIIVGAGTLKHDNPSLTVRGVPAVGDVPLRVVMCFE-TPKFFADCK 254
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ AP + + + + I L +L L G LL+EGG
Sbjct: 255 LLSAEAPTRFYVRSINTH---TEQWREAGIEVEQVTSLAGVLKHLAEDGRLMLLLEGGGE 311
Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
+ SF+ +R D ++LY++ I+IG IP ++ + + R G D +
Sbjct: 312 LHASFLEARFTDELVLYQAPILIGGRDAIPLWSGQGVDSVDHAPHLEQIERRILGVDQMI 371
Query: 353 EYIG 356
Sbjct: 372 RGRV 375
>gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
JJ]
gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans
JJ]
Length = 380
Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 21/375 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ DA FM+ AL + G NP V ++V+DG ++ G G PHAEV+ L +
Sbjct: 1 MAPVDADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVAEGWHKVFGGPHAEVECLHD 60
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G G T YVTLEPC+H+G++PPC++ +++ GI RVVV DP+ G
Sbjct: 61 AERKGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDPNPVAGGGAALLR 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ + ++ES+ + + ++T Q R ++T+K+A++ D I + ++ S
Sbjct: 121 QEGVEVTVGVLESQCREAVADFITWQTMGRPYVTVKLAMTLDGRIATRTGDAAWVSCEAS 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKII 237
+ +VH +RA S A+LVG GT+ AD+P L+ RL H+P + + +L +
Sbjct: 181 RERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAHNPQPLGVVVTRRLPDADAQL 240
Query: 238 KTALLAPVIIVTENDDPVLALA-----------FRKKNINIIYCDCRDLKKLLTILVGRG 286
P +V D A L +
Sbjct: 241 ALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRAANGEGLDLAAGLARLRQEAR 300
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCV 341
V +LL EGG +A S + L D ++++ + V+G+ + +
Sbjct: 301 VFALLCEGGGELAASLLGQGLADELVIFYAPKVLGDAAAVPGFSGLTVPRMADAAQLRFT 360
Query: 342 RRDYFGSDVCLEYIG 356
+ G+DV +
Sbjct: 361 SMESVGTDVMVRLRP 375
>gi|302871184|ref|YP_003839820.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
obsidiansis OB47]
gi|302574043|gb|ADL41834.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
obsidiansis OB47]
Length = 371
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 15/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A
Sbjct: 6 HSYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + AT YV+LEPC H+G+ PPC + II+ GI++V++ DP+ V+G+G+Q L Q G
Sbjct: 66 GNSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVIIATRDPNPLVNGKGIQILKQHG 125
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + ++ + ++K +I +K+A S D I
Sbjct: 126 IEVVEGVLQKEAESVNKEFFKYMKKGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + A LV + TV++D+P L R + P+R+++D + ++ L+ I+KT+
Sbjct: 186 VHSLRQKYMATLVSVNTVISDNPILNVRYGEIIR-QPIRVVIDTNLRIPLECNIVKTSDE 244
Query: 243 APVIIVTENDDPVL-------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
IV + + +L + + L + + S+LVEGG
Sbjct: 245 YSTYIVCSENVNDTQKIKLLSQKGIKIIFAKQSEDGHLELSDVFSKLAQQKIISVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCL 352
+ + S + R+ D + IG + E + + F + +
Sbjct: 305 SMLNFSLLKKRIADYWYSLIFNVFIGGQNTKGVVGAEGFEEFFPKLVNPKVTIFKNSTII 364
Query: 353 E 353
E
Sbjct: 365 E 365
>gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
Nor1]
gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans
Nor1]
Length = 379
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 125/364 (34%), Positives = 184/364 (50%), Gaps = 12/364 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL +R G TS NP V +IVKDG ++G G G PHAE+ A+ +AG+
Sbjct: 3 HESYMRRALALARRAEGQTSPNPMVGAVIVKDGTIVGEGWHHRAGTPHAEIHAINQAGDL 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+ AT YVTLEPCSHYGR+ PC Q I++ GI RVV + DP+ V+G+G ++L + G+ V
Sbjct: 63 AKDATLYVTLEPCSHYGRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ +E ++ K LK A+S D I S ITG ++ +VH
Sbjct: 123 IEGVLATEAAQLNEVFIKWITTKMPFGILKTAMSLDGKIATYTGHSRWITGLPARTRVHE 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R++ DAILVG+GTV+AD+PELT RL +P+RI+ D + L++KI+ +
Sbjct: 183 WRSKYDAILVGVGTVVADNPELTARLIP-NGKNPLRIVADSLARTPLNAKIVTDGKAPTI 241
Query: 246 IIVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
I VT A + + D DL+ L L R VTS+++EGG A+ S
Sbjct: 242 IAVTPEAPSDRIAALKASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGGGALGAS 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLE-YI 355
+ + +VD + + + +IG P P+ + G D + YI
Sbjct: 302 ALAANVVDKVYWFIAPKIIGGRSAPGPIGGMGAEYLEQAVELENTAIECVGEDFLVTAYI 361
Query: 356 GKNL 359
K
Sbjct: 362 KKRE 365
>gi|312128288|ref|YP_003993162.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
hydrothermalis 108]
gi|311778307|gb|ADQ07793.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
hydrothermalis 108]
Length = 371
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 102/365 (27%), Positives = 163/365 (44%), Gaps = 15/365 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+
Sbjct: 2 RSLSHSYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIED 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + AT YV+LEPC H+G+ PPC + II+ GI++VV+ DP+ V+G+G+Q L
Sbjct: 62 AIKNGYSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVIATRDPNPFVNGKGIQIL 121
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
Q GI V + E E + + +I +K+A S D I
Sbjct: 122 KQHGIEVVEGVLEKEAESINKDFFKYMKTGIPYIAIKVAHSIDGKIATPSNKRFLFNTEE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
VH LR + A LV + TV++D+P L R G P+R++LD ++ + I+K
Sbjct: 182 ENVFVHSLRQKYMATLVSVNTVISDNPILNAR-YGQIVRQPIRVVLDSKLRIPFECNIVK 240
Query: 239 TALLAPVIIVTENDDPVL-------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
T+ IV + + +L + + L + + S+L
Sbjct: 241 TSDEYSTYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLELSDVFSKLAQQKIVSVL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGS 348
VEGG+ + S + R+ D + IG + E + + F +
Sbjct: 301 VEGGSLLNFSLLKQRIADYWYSLIFNVFIGGQHTKGVVGSEGFEDLFPKLVNTKVTTFKN 360
Query: 349 DVCLE 353
+E
Sbjct: 361 STIIE 365
>gi|94984408|ref|YP_603772.1| riboflavin biosynthesis protein RibD [Deinococcus geothermalis DSM
11300]
gi|94554689|gb|ABF44603.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Deinococcus
geothermalis DSM 11300]
Length = 383
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 116/358 (32%), Positives = 175/358 (48%), Gaps = 12/358 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ DA M AL + + +G T+ NP V C+IV+ G V+GRG G PHAEV AL EAG
Sbjct: 24 AADAALMDQALAQAAYGLGRTAPNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFALREAG 83
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH+GR+PPCA +I G+ RVVV DP+ +V+GRG++ L G+
Sbjct: 84 ERARGATAYVTLEPCSHFGRTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLRAAGL 143
Query: 125 IVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + A R + K A++ D + G G+ +T ++ +V
Sbjct: 144 HVTVGVGEEAALRQQAGFRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPARARV 203
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R + DA+ VG GT+LADDP LT R P ++ D + + ++ ++ +
Sbjct: 204 MRWRNELDAVAVGSGTLLADDPALTTRGVP-GGRDPRPVLFDRRARTPVAARALRPGTIV 262
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
T D A A + L + L L ++SLL+EGG +A +F
Sbjct: 263 VTAPETNTDHLEAAGA--------VILRADSLPEALHGLGELNISSLLLEGGPRLASAFF 314
Query: 304 NSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
L+D + + ++G G P P + + + G D+ + +
Sbjct: 315 ADGLIDEVRALIAPRLLGAGLPPLDGPARPLAQAQILRDPQGEPLGPDLLVTGRLNEI 372
>gi|116623314|ref|YP_825470.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Candidatus Solibacter usitatus Ellin6076]
gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Candidatus Solibacter usitatus Ellin6076]
Length = 369
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 110/351 (31%), Positives = 158/351 (45%), Gaps = 11/351 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
+M AL +R L S NP V +IV+DG V+GRG Y G HAE+ AL +AGE+ARG
Sbjct: 5 YMREALDLARKGRSLASPNPLVGAVIVRDGKVVGRGFHTYAGLHHAEIIALAQAGEQARG 64
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A Y+ LEPCSH GR+PPC +I GI RVV + DP+ V+G+G L + GI V
Sbjct: 65 AEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEVVMA 124
Query: 130 MESEGK--IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
E + +L + R +TLK A++ D I IT ++ V LR
Sbjct: 125 DEFAAEAGKLNEPFLHFMLTGRPLVTLKTAITLDGKISAPDDNRGWITSERARAHVQELR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI----IKTALLA 243
DAIL GIGTVLADD L+ R + +RI++D +L LDSK+ L
Sbjct: 185 HDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIVMDSQLRLPLDSKMARSANGDVLAI 244
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ +L + + DL+ ++ L SL++E G+ + S +
Sbjct: 245 TTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIVEWLGRHRYLSLMIEAGSKLNWSAL 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSD 349
+VD + Y ++G + D
Sbjct: 305 EGNVVDRVFFYYGPKILGGLEALPLAGGIGRRRRQDAIQLHNLSIHQIPPD 355
>gi|255038066|ref|YP_003088687.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
18053]
gi|254950822|gb|ACT95522.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM
18053]
Length = 354
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 117/362 (32%), Positives = 171/362 (47%), Gaps = 20/362 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62
D ++M AL+ + + G S NP V C+IV DG +IG G G PHAEV+A+E+
Sbjct: 2 ETDNQWMERALQLAGYGRGAVSPNPMVGCVIVHDGRIIGEGWHRAYGGPHAEVRAIEDTD 61
Query: 63 ---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
ATAYVTLEPCSH G++PPCA ++ ++RVV+C +DP+ VSGRG++ L
Sbjct: 62 ARGNSHLLPQATAYVTLEPCSHTGKTPPCADLLVSRRLKRVVICNNDPNPLVSGRGIRRL 121
Query: 120 SQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V+ + + T +R ++ LK A + D +G + I+G +
Sbjct: 122 REAGIEVECGVAEAAGTELNKRFFTAMTLQRPYVILKWAETADGFLGYQAGSPLQISGTL 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S +VH R + DAI+VG T L D+P L R +P+RI+ D H +L +
Sbjct: 182 SNMRVHQWRTEEDAIMVGYKTALMDNPRLNVRHWA--GRNPVRIVTDRHLQLPPQLHLFD 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGVTSLLVEGG 295
+ V+ D ++++L I L R V SLLVEGG
Sbjct: 240 QSQSTVVVSYDLETDIPSDPERYLAPTTAYMKIEPKVEEILQILQGLHRRKVQSLLVEGG 299
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
AAV ++F L D I + I IG G P+P + G D+ Y
Sbjct: 300 AAVINAFFECGLWDEIRRCQGGITIGNGVAAPAPKGIFRG--------SERVGDDLWTFY 351
Query: 355 IG 356
Sbjct: 352 SR 353
>gi|237719659|ref|ZP_04550140.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
gi|229450928|gb|EEO56719.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4]
Length = 345
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 110/355 (30%), Positives = 164/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 4 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T R ITLK A S D+ I V ++ ++
Sbjct: 124 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I
Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDG--N 239
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P I TE + P + ++ L R + SLLVEGG + SF
Sbjct: 240 VPTFIFTEKEQPEKKNITYITINFNHNPLKQIMEAL----YQRKIQSLLVEGGRQLLQSF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + G+ +P + + Y+ +
Sbjct: 296 IDNELWDEAYIEKCPSRL-HSGVKAPQMDDNFSYSIEEHFERQI-----WHYVRR 344
>gi|320335323|ref|YP_004172034.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
21211]
gi|319756612|gb|ADV68369.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM
21211]
Length = 353
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 119/347 (34%), Positives = 169/347 (48%), Gaps = 12/347 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
FM AL+ + +G T+ NP V C+IV G V+GRG G HAEV AL++AG AR
Sbjct: 2 HFMHQALQQAALGLGRTAPNPPVGCVIVAGGEVVGRGFHPRAGQGHAEVFALQDAGVRAR 61
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ V+GRG+ L G+ V
Sbjct: 62 GATAYVTLEPCSHTGRTPPCADALIRAGVARVVVAALDPNPVVAGRGVARLRTHGLDVHV 121
Query: 129 MMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
++ + A R + K A + D I +P++G ++ VH R
Sbjct: 122 GPLADAAVRQQAGFRSLITRGRPWVVYKYAATLDGKISADDARPLPVSGPDARALVHTWR 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DAI VG+GTVLADDP LT R P I+ D H + ++ V++
Sbjct: 182 NEFDAIAVGVGTVLADDPHLTTRGVP-GGRDPRPIVFDRHARTPTTAR---ALRPGTVLV 237
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ A L + L L GVTSLL+EGGA +A + + L
Sbjct: 238 TGPDARTDAHEA-----AGAHVLRAPTLHEALQGLGALGVTSLLLEGGARLASALYAADL 292
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKN-FMCVRRDYFGSDVCLE 353
+D + + + ++G G+P+ V+ G+DV +E
Sbjct: 293 IDEVRAFIAPTLLGA-GLPALTSPAAHAPRALHDVQATRVGTDVLIE 338
>gi|150019955|ref|YP_001305309.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
BI429]
gi|149792476|gb|ABR29924.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis
BI429]
Length = 337
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 94/353 (26%), Positives = 161/353 (45%), Gaps = 21/353 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
++M A+ S+ +G S NP V +IVK+G +IG G G HAE A+ A E+
Sbjct: 2 EKYMKLAIELSKKGIGKVSPNPLVGAVIVKNGKIIGMGYHERYGGFHAERNAILNAKEDV 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+G++ +V LEPCSH+G++ PC II GI +V + DP+ V+G+G++ L + GI VD
Sbjct: 62 KGSSLFVNLEPCSHHGKNLPCVDLIISSGISKVYIASVDPNPLVNGKGIEKLKKNGIEVD 121
Query: 128 RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ S+ +L+ + + K+ ++ LK+A++ D I + S IT + N H L
Sbjct: 122 VGLLSDEAKYLNRVFFKYITKKLPYVALKVALTLDGFIADSNGNSKWITKQ-NFNVSHSL 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R +ILVG TVL D+P R+ + + + + +
Sbjct: 181 RNFFSSILVGANTVLKDNP---------------RLTCRNGGRNPVRIVLDRDGITLGRG 225
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
N++ + + + + +L+ L G+ S+L+EGGA+V F+
Sbjct: 226 FNVYNEEARTIVFSKCCQGTLECYPETEPFDILSRLYNLGIDSVLIEGGASVLSQFL--N 283
Query: 307 LVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D + L+ S + G G P + ++ F + LE
Sbjct: 284 FADELHLFYSTKIFGRGLSPFENIIKFVSQNMEFKIRNLKRLEDEFYLEVFRN 336
>gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Bacteriovorax marinus SJ]
Length = 378
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 113/379 (29%), Positives = 171/379 (45%), Gaps = 17/379 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +++ ++ G+TS NP V +IV+D I+IG G G PHAE A+
Sbjct: 1 MDI-KIDEQYIRRCFALAKKATGMTSPNPLVGSVIVQDNIIIGEGYHQRYGEPHAEPNAI 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A E GAT Y LEPC H + PPC IIE I+RVV+ DP+ V+G G++ L
Sbjct: 60 NNAVEPVEGATLYCNLEPCCHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKL 119
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + E EG+ + ++ + +K+A + D I S I+ +
Sbjct: 120 REAGIAVSVGVLEEEGRELNEVFFKYITTQKPFVHIKLAQTLDGKIATDSGDSKWISSEL 179
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237
++ +VH R + DA+L+G T+ DDP L R+ E P RIIL KLS + K+
Sbjct: 180 ARERVHQWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHPFRIILCSVDKLSTEFKVF 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINI---------IYCDCRDLKKLLTILVGRGVT 288
+ A II+T + + + D DL LL L ++
Sbjct: 240 NDSASAKTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKEDSFDLNDLLLKLGALKIS 299
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDY 345
S+LVEGG +V +FI+ D + L+ +IG G + + +
Sbjct: 300 SILVEGGQSVITAFIDQVEYDKLSLFICPKIIGNGISYYKNDKKQKMSEAIQLNISEIEN 359
Query: 346 FGSDVCLE-YIGKNLCLQE 363
F + Y G CLQ
Sbjct: 360 FDGQIIYHTYSGGQKCLQG 378
>gi|255002722|ref|ZP_05277686.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str.
Puerto Rico]
Length = 364
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 134/349 (38%), Positives = 186/349 (53%), Gaps = 7/349 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
MS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AGE A G
Sbjct: 1 MSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGEAAAG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ V
Sbjct: 61 STVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVEVKLG 120
Query: 130 MESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + L+ + ++R IT+K+A + D I + IT +++ VH RA
Sbjct: 121 VLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVHKQRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P I
Sbjct: 181 MHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVPTYIA 240
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
T+NDD A R I L G+T L VEGG + + LV
Sbjct: 241 TDNDDHKALHAVRYLRICERGDFLAGTMNALAE--ELGITRLFVEGGGVLVTELLKRGLV 298
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEY 354
D I R+ V GE G+ S L L +F V+ F D +
Sbjct: 299 DQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTVDIF 347
>gi|213018626|ref|ZP_03334434.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|212995577|gb|EEB56217.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 399
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 127/394 (32%), Positives = 183/394 (46%), Gaps = 48/394 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
MS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A + A
Sbjct: 1 MSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDLTHSA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI V++ +
Sbjct: 61 TMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEVEQGI 120
Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L+ + T + R I KIA + D I S IT ++N VH LRA+
Sbjct: 121 MQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHELRAK 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL------- 242
DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA
Sbjct: 181 YDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYNHDLS 240
Query: 243 ------------------------------------APVIIVTENDDPVLALAFRKKNIN 266
+ +I + +
Sbjct: 241 KEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYLVVNS 300
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
++ G+T LLVEGG + + L+D +I+ RS ++G P
Sbjct: 301 NNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGNDATP 360
Query: 327 SPLEEGYLEKN----FMCVRRDYFGSDVCLEYIG 356
+ G N F V+ F DV +
Sbjct: 361 FIGDLGIQSINNCHKFKKVKIIEFSEDVVEVWDR 394
>gi|91977144|ref|YP_569803.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris
BisB5]
gi|91683600|gb|ABE39902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodopseudomonas palustris BisB5]
Length = 396
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 156/366 (42%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM AL R +G T+TNP+V +IVKDG+++GRG T GG PHAEV+AL AGE
Sbjct: 28 DLRFMQLALTLGRRGLGRTATNPAVGAVIVKDGVILGRGWTEVGGRPHAEVEALARAGEA 87
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH GRSPPCA +I GI RVV ++DP+ V+G+G L GI V
Sbjct: 88 ARGATLYVTLEPCSHVGRSPPCADAVIAAGISRVVSAIEDPNPLVAGQGHDKLRAAGIAV 147
Query: 127 DRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + + HA R+ ++R H+ LK+AVS D+ I AG V ITG ++ +VHL
Sbjct: 148 DVGLCAAEAARDHAGHFRRVRDRRPHVVLKLAVSTDDKIARAGHKPVAITGEETRARVHL 207
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LDP ++ SK++ +A P+
Sbjct: 208 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDPSLRIPGGSKLVHSARQTPL 267
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK-------------KLLTILVGRGVTSLLV 292
++ A + +L L +GVT LLV
Sbjct: 268 WLIASEVAEAAAATRLGAAGAHVIHVADRPSVTDGQSRPGLDLAAVLATLSEKGVTRLLV 327
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348
EGGA VA + ++ L D I L R + IG G+ + PL + + G
Sbjct: 328 EGGARVASALVSENLADEIWLLRGETTIGADGVDALDRLPLTTITQSSGWRVRDSERLGP 387
Query: 349 DVCLEY 354
D Y
Sbjct: 388 DTLTIY 393
>gi|312134474|ref|YP_004001812.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
owensensis OL]
gi|311774525|gb|ADQ04012.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
owensensis OL]
Length = 371
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 102/350 (29%), Positives = 163/350 (46%), Gaps = 13/350 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A
Sbjct: 6 HSYYMNMALELAKKASYLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + AT YV+LEPCSH+G+ PPC + II+ GI++VVV DP+ V+G+G+Q L Q G
Sbjct: 66 GYSLKNATMYVSLEPCSHFGKQPPCTEAIIKSGIKKVVVATRDPNPIVNGKGIQILKQHG 125
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + ++ + ++ +I +K+A S D I
Sbjct: 126 IEVVEGVLQKEAEIVNKEFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+
Sbjct: 186 VHSLRQKYMATLVSVNTVISDNPILNAR-YGQIVRQPIRVVLDTKLRIPLECNIVKTSDE 244
Query: 243 APVIIVTENDDPVLAL-------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
IV + + +L + L + + S+LVEGG
Sbjct: 245 YSTYIVCSENVNDTQKIDLLSQRGIKIIYAKSSEDGHLELSDAFSKLAQQKIISVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRD 344
+ + S + R+ D + IG + + E+ F V
Sbjct: 305 SMLNFSLLKKRIADYWYSLIFNVFIGGENTKGVVGKEGFEEFFPKLVNTK 354
>gi|298373665|ref|ZP_06983654.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
str. F0058]
gi|298274717|gb|EFI16269.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274
str. F0058]
Length = 349
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 21/355 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
D ++M + +R+ G + NP V +IV+DG +IG G G HAEV A+
Sbjct: 3 IDEQYMRRCITLARYADGYAAPNPMVGAVIVRDGKIIGEGYHRRYGEAHAEVNAVNSVLN 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ R +T YV LEPCSHYG++PPC I+ GI VVV + D + V G G++ L + G
Sbjct: 63 KDLLRRSTLYVNLEPCSHYGKTPPCVDLIVRSGIPNVVVGMRDVNPEVCGNGIRKLLEAG 122
Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFI 178
+ +V+ ++E E + ++T +KR +I LK A + D I + I+
Sbjct: 123 VGVVEGVLEDECRFLNRRFITFMQKKRPYIILKWAQTADGFIDELRDTPARKPLKISNPT 182
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+K H +R +I+V T + D+P LT +P+RI++D + ++ I
Sbjct: 183 TKTLNHCMRTHEMSIMVATRTAILDNPRLTAS--KWNGRNPIRILIDRTLSVPIEYNIFD 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
V + + + + + ++L L R + S++VEGG +
Sbjct: 241 DKAKTLVF------NSIRNEINDNIEFVKLDFEQNIIPQILNELYVRNIQSVIVEGGRRL 294
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
SFI + D S+ +I G+P+P + V FG ++C
Sbjct: 295 LVSFIEYGVWDECHTEVSKQII-RNGVPAP-----SMIDLEPVAEQQFGENICFT 343
>gi|284037818|ref|YP_003387748.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
gi|283817111|gb|ADB38949.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74]
Length = 352
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 124/368 (33%), Positives = 179/368 (48%), Gaps = 27/368 (7%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPH 54
M VS S D RFM AL + G S NP V C+I +IG G G H
Sbjct: 1 MNVSGLSVDERFMRRALELATLGRGHVSPNPMVGCVITHGSGSQERIIGEGWHKRYGDWH 60
Query: 55 AEVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
AEV A+ + AT YVTLEPCSH+G++PPCA +IE ++RVV C DDP+
Sbjct: 61 AEVNAVNSVLPEHQQLLSEATVYVTLEPCSHWGKTPPCADLLIERHVKRVVCCNDDPNPL 120
Query: 111 VSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
VSG+G L GI V+ + +G++ + T +KR +I LK A + D I AG
Sbjct: 121 VSGQGFAKLRAAGIQVETGVLAEQGRLLNARFFTFFEQKRPYILLKWAETADGFIAGAGG 180
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
V I+G ++ VH R + DAILVG T D+P L RL P R++LD +
Sbjct: 181 QPVKISGDLAHRLVHRWRGEEDAILVGANTARLDNPRLNTRLWE--GKDPTRVVLDRNLT 238
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
L+ D + + V ++ D N+ Y L ++++ L R V S
Sbjct: 239 LTTDLHLFDGSQPTLVYHASQTD-------ALPDLPNVQYVVAESLYQVMSDLYQRKVQS 291
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LVEGGA V ++F+ + L D + ++RS+ ++G G+ +P G R+ G D
Sbjct: 292 VLVEGGAVVLNAFMEAGLWDEMRVFRSRTMLG-NGVKAPTVRGI------IHSREKVGDD 344
Query: 350 VCLEYIGK 357
Y+
Sbjct: 345 ELTSYMKP 352
>gi|254449430|ref|ZP_05062867.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
238]
gi|198263836|gb|EDY88106.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus
238]
Length = 359
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 122/355 (34%), Positives = 172/355 (48%), Gaps = 11/355 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ +
Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPCENGGRVIGRGWTADGGRPHAETRALDS--ID 58
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GATAYVTLEPC+H+ ++PPC +I + RVV+ DPD RV+G+G+ L GI V
Sbjct: 59 AAGATAYVTLEPCAHHAKTPPCVDALIAANVSRVVIATGDPDPRVAGKGIAILRAAGIDV 118
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E ++ + +L R E R +TLK+A S D I A S ITG ++ +VH
Sbjct: 119 MIGVREDEARVDMAGFLLRITENRPLVTLKLASSFDGRIAAATGESKWITGPDARRKVHA 178
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+RA DA+LVG GTV ADDP LT R G + + + +
Sbjct: 179 MRAAHDAVLVGAGTVRADDPTLTVREMGAVRQPVRIVASGRLDMGAANLLATINYAPLWL 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
D K + D ++ L G+T + EGG ++A S + +
Sbjct: 239 CHGANVDAQKWVDQGAKSLPCDLQGREIDPVDMMHKLAAAGLTRVFCEGGGSLAASLLGA 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD I+ + + IV+G G PS L+ F V G+D+ +
Sbjct: 299 GLVDEIVGFTAGIVLGAEGTPSIGAMGLDRLADAPRFDLVETTRIGADIMHRWRR 353
>gi|153808975|ref|ZP_01961643.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
gi|149128308|gb|EDM19527.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185]
Length = 348
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 95/356 (26%), Positives = 163/356 (45%), Gaps = 15/356 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 4 EKYMRRCIELAKNGLCNAAPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ESE + + ++T R +ITLK A S D+ I + P+ +
Sbjct: 124 VIVGVLESECRQLIRRFITFNTLHRPYITLKWAESADHFIDLERTDGQPVVLSSPLTSML 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + +++++ + +G A + + +P+R++LD L D ++ +
Sbjct: 184 VHKRRAESVAIMVGRRTALLDNPSLTVRNWYGRNPIRVVLDRTLSLPNDLQLFDGNVPTL 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + I + +++ L R + SLLVEGG+ + SFI
Sbjct: 244 VFTAN------KHPEAKNITYITIDFNHNLFTQIMEELYQRKIQSLLVEGGSQLLQSFIA 297
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
+ L D I + + + G+ +P + F ++FG YI ++
Sbjct: 298 NELWDEIYIEKCPNKL-YSGVKAP----EICDKFSYSTEEHFGR-QFWHYIHQDKL 347
>gi|213962287|ref|ZP_03390550.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
Capno]
gi|213954953|gb|EEB66272.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena
Capno]
Length = 323
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 158/323 (48%), Gaps = 7/323 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67
+ ++ + +G T NP V C+IV DG +IG G G PHAEV+A+ ++
Sbjct: 1 MIKRCIQLAYNGLGTTYPNPLVGCVIVHDGKIIGEGWHQKAGEPHAEVRAIASVKDKSLL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+T YV+LEPC+HYG++PPCA II I RVV+ DP +V+GRG++ L G V
Sbjct: 61 AESTLYVSLEPCNHYGKTPPCADLIITHRIPRVVIGTTDPFAKVAGRGIEKLRDAGCEVT 120
Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT-GFISKNQVHL 185
+ME E + + T +KR +I LK A + D I A ++ + +
Sbjct: 121 VGVMEKECRELNKRFFTFHEKKRPYIFLKWAETADGFIAPAHKDTLAPVWITDVYTRQEV 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+ +S+ + +G + +P+R+I+DPH + + K+ L P
Sbjct: 181 HKMRSEEQAILVGVGTVLADNPSLDTRDWYGKNPLRVIIDPHLRSPKEFKVWND--LQPT 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ +T + + I I +++ +L R + SL+VEGGA FIN+
Sbjct: 239 LFITNKEKVSDKNYGVQTEIIGIDFTHNVPQQICDLLYQRNIQSLIVEGGAYTLQQFINA 298
Query: 306 RLVDSIILYRSQIVIGEGGIPSP 328
L D + +Y+S++ G+ G+ +P
Sbjct: 299 GLYDEMRIYKSEVSFGK-GVKAP 320
>gi|237715308|ref|ZP_04545789.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
gi|294643551|ref|ZP_06721357.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
gi|294807058|ref|ZP_06765877.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
CC 1b]
gi|229444617|gb|EEO50408.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1]
gi|292641126|gb|EFF59338.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a]
gi|294445757|gb|EFG14405.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD
CC 1b]
Length = 345
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 111/355 (31%), Positives = 165/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 4 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T R ITLK A S D+ I + ++ ++
Sbjct: 124 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I
Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDG--N 239
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + ++ L R + SLLVEGG + SF
Sbjct: 240 VPTLIFTEKQQPEKKNITYITINFSHNPLKQIMEAL----YQRKIQSLLVEGGRQLLQSF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + GI +P + + Y+ +
Sbjct: 296 IDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQI-----WHYVRR 344
>gi|297621291|ref|YP_003709428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Waddlia chondrophila WSU 86-1044]
gi|297376592|gb|ADI38422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Waddlia chondrophila WSU 86-1044]
Length = 339
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 119/355 (33%), Positives = 175/355 (49%), Gaps = 28/355 (7%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D R+M A+ NP V C++VK+G ++G G G PHAEV AL EAG+
Sbjct: 2 DDRRWMEMAIAEGLKGRLDAPPNPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQ 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPC H GR+ PC +IE G+ RVVV V+DPD +VSG G+ L GI
Sbjct: 62 NARGATAYVTLEPCVHTGRTLPCIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIK 121
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E E ++ L YL + R + K A+S D + S I+ ++ H
Sbjct: 122 VTVGVEREAVELSLAPYLHHRRTGRPFVIAKTALSIDGRAAASDKTSQWISCEAARRDAH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIKTALLA 243
+RA+S AIL+G GT + D P+LT R + P+R++LDP+ K+ DS + L
Sbjct: 182 EMRAESQAILIGAGTAVKDSPQLTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLDLAP 241
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
++ + + + +K+L+IL +GV LL+EGG F+
Sbjct: 242 TLV----------------------FSEKMEPEKILSILGEKGVIQLLIEGGPTTITQFL 279
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
L+D +I+Y ++G G+P + + G+ V Y
Sbjct: 280 QQHLIDRLIVYTGPCLLGSDGLPGFGSMGICSMENALRLHLLESSAIGNSVKSVY 334
>gi|262405149|ref|ZP_06081699.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
gi|262356024|gb|EEZ05114.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22]
Length = 351
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 111/355 (31%), Positives = 165/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T R ITLK A S D+ I + ++ ++
Sbjct: 130 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDG--N 245
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + ++ L R + SLLVEGG + SF
Sbjct: 246 VPTLIFTEKQQPEKKNITYITINFSHNPLKQIMEAL----YQRKIQSLLVEGGRQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + GI +P + + Y+ +
Sbjct: 302 IDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQI-----WHYVRR 350
>gi|293371696|ref|ZP_06618107.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
gi|292633393|gb|EFF51963.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f]
Length = 351
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 111/355 (31%), Positives = 165/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E
Sbjct: 10 EKYMKRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCANLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T R ITLK A S D+ I V ++ ++
Sbjct: 130 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVSLSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDG--N 245
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + ++ L R + SLLVEGG + SF
Sbjct: 246 VPTLIFTEKQQPEKKNITYITINFNHNPLKQIMEAL----YQRKIQSLLVEGGRQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + G+ +P + + Y+ +
Sbjct: 302 IDNELWDEAYIEKCPGRL-HSGVKAPQMDDNFSYSIEEHFERQI-----WHYVRR 350
>gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
4252]
gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM
4252]
Length = 368
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 115/364 (31%), Positives = 162/364 (44%), Gaps = 25/364 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-----G 64
M L + G S NP V ++V DG V+ G G PHAE A+EEA
Sbjct: 1 MVRCLELAFRGAGRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGP 60
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E R AT YV LEPC+HYG++PPCA FII GI RVVV + DP +V+GRG+ L G+
Sbjct: 61 EALRRATLYVNLEPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGV 120
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E+ + F A++ R +TLK+A + D + S I+G ++ V
Sbjct: 121 QVEVGVLEAACRRFNEAFVHHVETGRPLVTLKMAQTLDGFVATRTGQSRWISGERARKLV 180
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA D +LVG GT ADDP LT R P+RI+LD L ++ A
Sbjct: 181 HCWRAVLDGVLVGSGTAAADDPALTVRHVE--GRQPVRIVLDRTGGLPPTLRLFTDEQAA 238
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----------GRGVTSLLV 292
+ + A ++ ++ L + GR + SLLV
Sbjct: 239 RTLAIVGPGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLERLGREGGPDGRPLQSLLV 298
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348
E G +A + LVD L+ + + G G+P + G F R G
Sbjct: 299 EAGPRLATALFRQGLVDRFFLFIAPRLFG-EGVPLLNDLGVRAVDEGPRFEAHRWVEVGE 357
Query: 349 DVCL 352
D+
Sbjct: 358 DLLF 361
>gi|298482442|ref|ZP_07000628.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
gi|298271421|gb|EFI12996.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22]
Length = 351
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 165/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T + R ITLK A S D+ I V ++ ++
Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDG--N 245
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + ++ L R + SLLVEGG + SF
Sbjct: 246 VPTLIFTEKQQPEKKNITYITINFSHNPLKQIIEAL----YQRKIQSLLVEGGRQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + G+ +P + + Y+ +
Sbjct: 302 IDNELWDEAYIEKCPSRL-HSGVKAPQMDDNFSYSIEEHFERQI-----WHYVRR 350
>gi|124010107|ref|ZP_01694767.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
23134]
gi|123983875|gb|EAY24280.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC
23134]
Length = 355
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 18/353 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +FM AL + G S NP V C+IV +IG G + G HAEV A+ +
Sbjct: 14 DEKFMQRALDLAVLGAGKVSPNPMVGCVIVHQEQIIGEGWHQFYGKAHAEVNAVNAVENK 73
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
AT YVTLEPC+H G++PPCA +I+ ++RVVVC DP V G+GL+ L GI
Sbjct: 74 ALLSEATVYVTLEPCAHQGKTPPCADLLIKHQVKRVVVCNQDPHPLVGGKGLEKLRTAGI 133
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E++GK + T +++R ++ K A + D I S I+ +S+ V
Sbjct: 134 EVTVGILEAQGKEVNKRFFTGLLKQRPYVIFKWAETADGFIARKNYESKWISNKMSRMLV 193
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R + D+I+VG T D+P+L R + +P R+++D KL + + L
Sbjct: 194 HKWRTEEDSIMVGSNTARYDNPQLNAR--LWKGRNPARVVIDRRLKLPSNLHLYNQQQLT 251
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ L+ + + + + L+++L L + + S++VEGG+ + + I
Sbjct: 252 FIY-------NQLSRSQASNLEFVKLDEDKFLEEVLLDLYEKKIRSVIVEGGSTLINLLI 304
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ D +++S + GI +P + + V + D EY
Sbjct: 305 EQNMWDEARVFKSTQTVFHEGIKAP------KVHGHLVNTERIMDDFYYEYRP 351
>gi|158422887|ref|YP_001524179.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
gi|158329776|dbj|BAF87261.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571]
Length = 384
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 143/367 (38%), Positives = 198/367 (53%), Gaps = 15/367 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQAL 60
D M+ AL + +G T NPSV ++V+ ++GR TA G PHAE AL
Sbjct: 17 EEDEALMAEALAVGQLGLGRTWPNPSVGAVVVRPTSAGPQILGRAGTAPAGRPHAEPLAL 76
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+ ARGAT YVTLEPCSH+GR+PPCA +I GI RVV V+DPD RV GRG+ +
Sbjct: 77 AQAGDAARGATLYVTLEPCSHFGRTPPCADAVIAAGITRVVAAVEDPDPRVRGRGVARMR 136
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V + +E + HA +V + R H+ LK+AVS D G+ G ITG +
Sbjct: 137 AAGLWVTVGVGAERALEDHAGHISRVTRGRPHVLLKMAVSADGKAGLEGPRPAAITGEEA 196
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +VHL+RA +DAI+VGIGTVLADDP+LT RL G++ SP+RI+LD +L +++T
Sbjct: 197 RARVHLMRAHADAIMVGIGTVLADDPQLTVRLPGMEGRSPVRIVLDGDLRLPTTCGLVRT 256
Query: 240 ALLAPVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
A PV + D P + DL ++ +L GVT L+VE
Sbjct: 257 AEQVPVWAIAAEDAPAEREKALVDAGVQVLRAPRAASGRLDLPAVMKLLGLLGVTRLMVE 316
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349
GG VA + ++ LVD + + RS +G GG+ + PL F V R G D
Sbjct: 317 GGPQVAAALLDEGLVDEVAVLRSPDALGAGGLDALAGRPLARLTEPVGFAVVERTELGRD 376
Query: 350 VCLEYIG 356
+
Sbjct: 377 SLMRLRR 383
>gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chromobacterium violaceum ATCC 12472]
gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chromobacterium violaceum ATCC 12472]
Length = 368
Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats.
Identities = 121/367 (32%), Positives = 175/367 (47%), Gaps = 11/367 (2%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S+ D +M ALR + + NP V C++V G V+G G T G HAEVQA
Sbjct: 1 MTDYSADDYLYMQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQA 60
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+++ GE RGATAYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP VSGRG+
Sbjct: 61 IKDCLARGESPRGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGI 120
Query: 117 QWLSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L G+ ME++ + +L+R R +TLK A + D + S IT
Sbjct: 121 AMLRAAGVEASAGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G ++ V LRA AIL G GTVLADDP+LT R P R++LD + ++
Sbjct: 181 GPEARMDVQRLRAAHCAILTGSGTVLADDPQLTVR-ELQVASQPWRVVLDGDLRTDPAAR 239
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + + + DL LL L GRGV L+VE
Sbjct: 240 VYQGGGAWLASCAADAGRLAAFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEA 299
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
GA + + + + LVD I+LY + + G+ L++ + G D+
Sbjct: 300 GAGLNGAMLRAGLVDEIVLYLAPSLAGDAARGLFAWPALDDLADKVELDVADVGMVGRDL 359
Query: 351 CLEYIGK 357
L +
Sbjct: 360 RLTLRPR 366
>gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS]
gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS]
Length = 375
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 118/370 (31%), Positives = 170/370 (45%), Gaps = 15/370 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
MP DA+ ++ ALR + + LT NP V C++ +G V+G+G T G PHAEV A
Sbjct: 1 MPSHEQDAQHIATALRLASDALLLTDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMA 60
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L +A G GATAYVTLEPCSH+GR+ PC +I GI RVV + DP+ V+G+G
Sbjct: 61 LRDAAAQGHSVEGATAYVTLEPCSHHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGF 120
Query: 117 QWLSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+ L G+ V+ E + + +R V K + LK+A S D G+ S IT
Sbjct: 121 ERLRAAGVEVEVGPGADESRELNIGFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
++ H RA++ A+L G+GTVL D+P L RL P +++D + D+
Sbjct: 181 SEPARADGHAWRARASAVLTGVGTVLEDNPRLDVRLVPT-PRQPHLVVVDSRLQTPPDAH 239
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVE 293
I + ++ AL R + DL +L L RGV L VE
Sbjct: 240 IFIAGRPVWIYAAVRDEAKAAALEARGATVTCLANADGKVDLGAMLKDLAARGVNELHVE 299
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYF 346
G + S I VD +++Y + +IG G PL D F
Sbjct: 300 SGHKLNGSLIREGCVDELLVYLAPKLIGRGLDMASHIHADGPLTSLAGVLPLEFKSVDMF 359
Query: 347 GSDVCLEYIG 356
D+ +
Sbjct: 360 APDLRIVARV 369
>gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ruegeria sp. TM1040]
gi|99038255|gb|ABF64867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ruegeria sp. TM1040]
Length = 358
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 128/357 (35%), Positives = 181/357 (50%), Gaps = 11/357 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL R G T NP+V C+IV+ G V+GRG T GG PHAE AL +AG ARGA
Sbjct: 1 MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYV+LEPC+H+G++PPCAQ +IE G+ RVV ++D D RVSG+G + L GI V +
Sbjct: 61 TAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGV 120
Query: 131 ESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E F H + + R +TLK+A S D I S ITG ++ VH +RA+
Sbjct: 121 RAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT ADDP LT R + + P R+++ H L L SK+ ++A P+ +
Sbjct: 181 HDAVMVGAGTARADDPSLTVR-DLGIDQQPARVVVSRHLDLPLISKLARSAAEVPLYLCH 239
Query: 250 ENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
L D +L L G+T + EGG A+A S +
Sbjct: 240 GTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSVGLTRVFCEGGGALAASLLA 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
LVD ++ + + + IG G+PS + F G+D+ +
Sbjct: 300 HDLVDELVGFSAGLTIGAEGLPSIGALGIGHLSEAPRFDLHETRPIGADILHRWRRP 356
>gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium]
Length = 350
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 101/324 (31%), Positives = 167/324 (51%), Gaps = 15/324 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D+ +M+ AL+ + NP V C+IVKD +I +G G H E+ AL+
Sbjct: 4 TFSKNDSHYMAIALKLANEGRYGVGANPMVGCVIVKDDQIIAKGYHQTFGEAHGEINALK 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ +A GAT YVTLEPCSH G++PPCAQ II+ G ++V++ + DP+ VSG+G+ L
Sbjct: 64 QIDHQAHGATFYVTLEPCSHQGKTPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLEN 123
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + L+ ++++ +T KIA+S D M S ITG ++
Sbjct: 124 SGIEVITGLMENKALELNRGFVKRMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPAR 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
V LRA AI+ G GT++ D+P +T RLN + SP+R+++D ++ + I +
Sbjct: 184 QDVQKLRANHQAIITGSGTIITDNPSMTVRLNNINS-SPLRVVIDSKNQIQDTALNIFSN 242
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I N+ ++ DL L L +G+ + L+E G +
Sbjct: 243 DAPTLI-------------LNTNNVQVLESGKLDLNDALKHLGDQGINNALLEAGPGLIG 289
Query: 301 SFINSRLVDSIILYRSQIVIGEGG 324
+ + ++L+D I+Y + I++G
Sbjct: 290 AMLEAKLIDEFIIYTAPILMGSEA 313
>gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Thiobacillus denitrificans ATCC 25259]
gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5- phosphoribosylamino)uracil reductase
oxidoreductase protein [Thiobacillus denitrificans ATCC
25259]
Length = 359
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 124/361 (34%), Positives = 186/361 (51%), Gaps = 8/361 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D+RFMS AL+ + + TS NP V C++VKD ++G G G PHAE+ AL
Sbjct: 1 MRFTAADSRFMSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V+G G+ L+
Sbjct: 61 RAAGEAARGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLT 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI + ME+E + +++R +R + LK A + D +A S ITG +
Sbjct: 121 LAGIAAEVGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ V LRA++ AIL G GTVLADDP + R +P+R+++D + + I+
Sbjct: 181 RADVQRLRARACAILTGSGTVLADDPRMNVRDFD-IGRAPLRVVVDSTLRTPASAAILPA 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + L A + DL LL +L RGV + VE GAA+
Sbjct: 240 LVACR--DASPATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAGAALN 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + LVD + Y + + +G+ +PL F G D+ L +
Sbjct: 298 GALLAAGLVDEWVAYLAPLAVGDDARGLFAHAPLATLAEAARFRLQDLRQIGGDLRLTLL 357
Query: 356 G 356
Sbjct: 358 P 358
>gi|313207146|ref|YP_004046323.1| riboflavin biosynthesis protein ribd [Riemerella anatipestifer DSM
15868]
gi|312446462|gb|ADQ82817.1| riboflavin biosynthesis protein RibD [Riemerella anatipestifer DSM
15868]
gi|315022456|gb|EFT35483.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Riemerella
anatipestifer RA-YM]
gi|325335416|gb|ADZ11690.1| Pyrimidine deaminase [Riemerella anatipestifer RA-GD]
Length = 339
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 170/354 (48%), Gaps = 20/354 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+++S + + G T NP V +IV +GI+IG G G PHAE+ A+ +
Sbjct: 3 HEKYISRCIALAEKARGNTYPNPLVGAVIVHNGIIIGEGYHHKAGEPHAEINAINSVENK 62
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSH+GR+PPCA I E G ++VV+ D + +VSG+G + + GI
Sbjct: 63 GLLKESTIYVSLEPCSHFGRTPPCATKITEIGFKKVVIGSADSNEKVSGKGKAMIEEAGI 122
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + + T +KR +I LK A S D I PI+ ++ V
Sbjct: 123 EVVDKVLEERCRWLNRRFFTFHEKKRPYIILKWAESNDGFI-DRNFVPTPISNTLASQYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +RA+ AILVG T L D+P L R +P R+++D K+ I T
Sbjct: 182 HKMRAEEHAILVGTQTALNDNPTLDVRHLD--GRNPTRVLIDLELKVPQSFNIFNTNAPT 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ + +ND + I L++L+ L + + S+++EGG+ + ++FI
Sbjct: 240 IIFNLHKND-------NQDHLKWIKIDKENFLEELMYHLYEQQIQSIIIEGGSKMLNTFI 292
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++L D ++ ++ + G +P+ EK + + D L + K
Sbjct: 293 EAQLWDEAVVIKAPNLTLNNGTKAPIFN---EKPYRQKQMR----DNVLNFYKK 339
>gi|332881258|ref|ZP_08448908.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332680634|gb|EGJ53581.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 358
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 110/332 (33%), Positives = 163/332 (49%), Gaps = 12/332 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--E 62
+ D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+
Sbjct: 2 TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRFVR 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L +
Sbjct: 62 NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQES 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPITG 176
GI V + E+E ++T R +ITLK A S D + +
Sbjct: 122 GIEVTVGVLEAECLALNRRFITFHTHHRPYITLKWAESADGFMDSLRTDYEKEKPYAFST 181
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ VH RA+ AILVG T LAD+P L R+ + P+R+++D L +
Sbjct: 182 PYTRMLVHRCRAEHQAILVGRQTALADNPSLNLRMWPGKS--PLRLVIDRRGDLPGHLAL 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
V + + P + L ++L L V SLLVEGG
Sbjct: 240 FNDGAETRVYLDVLSVLPPYGK-QTGVTCVRLDFSRDILPQILDDLYRLSVQSLLVEGGH 298
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ SFI++ L D I + +S + + + G+PSP
Sbjct: 299 RLLESFISAGLWDEIRVEQSPVFL-KEGVPSP 329
>gi|94265528|ref|ZP_01289276.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [delta proteobacterium MLMS-1]
gi|93453969|gb|EAT04315.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [delta proteobacterium MLMS-1]
Length = 374
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 129/374 (34%), Positives = 180/374 (48%), Gaps = 22/374 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL
Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A GAT YVTLEPC+H+GR+PPC++ II GIRRVV + DP V+ G + L
Sbjct: 61 AGEAAAGATIYVTLEPCNHHGRTPPCSEAIIAAGIRRVVYGLADPHE-VARGGAKRLESA 119
Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V ++ E + ++ R R + LK AVS D I A S ITG ++
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LR QSDAILVG GTVLADDP LT R G + P+R++LD + ++++
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLSQQ 239
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL---------------KKLLTILVGR 285
A I + A + + ++L L
Sbjct: 240 SPAATWIFCAPEAATERAAALEAAGARVVRLEPTPGGQSGLEPNFSGLDLWQVLRELAAN 299
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLE--EGYLEKNFMCV 341
GV LLVEGG V SF+ L D + + ++IG G+P +PL V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359
Query: 342 RRDYFGSDVCLEYI 355
G D+ L
Sbjct: 360 SSRRLGDDIMLRGY 373
>gi|239939894|ref|ZP_04691831.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
NRRL 15998]
gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus
NRRL 11379]
gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
Length = 366
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 106/357 (29%), Positives = 162/357 (45%), Gaps = 4/357 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL
Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A + ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP+ + +G G +
Sbjct: 63 ADDRARGGTAYVTLEPCNHTGRTGPCVQALLAAGISRVVYAVGDPNPQATGGGDTLRAAG 122
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ ++ E A+LT R ++ K A + D I A S IT ++
Sbjct: 123 VQVEQGLLAEEAGAGNAAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA++DA+LVG GT DDP+L R ++ + ++++
Sbjct: 183 VHRLRAEADAVLVGSGTARTDDPQLGVRGIDGATQPLRVVVDTNAAAVKPGARVLDATAP 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + + L A + DL LL L RGV S+L+EGG +A +F
Sbjct: 243 TLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLESLHTRGVRSVLLEGGPTLAGAF 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + VD ++ Y + +++G G + + G D+ + +
Sbjct: 303 VAAGKVDKVVGYLAPVLLGAGPAALADAGISTISQALRLDVTETVAIGPDLRVTAVP 359
>gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3]
Length = 380
Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 132/382 (34%), Positives = 184/382 (48%), Gaps = 38/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG-------------VTAYGGCP 53
D +M AL ++ VG TS NP G G P
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNP-------------AVGAVVVNGGTVVGLGAHLKAGEP 50
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAEV A+ AGE+ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G
Sbjct: 51 HAEVYAIRMAGEKARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAG 110
Query: 114 RGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
+G+ L Q GI VD + + + K +TLK A S D I A S
Sbjct: 111 KGIAKLRQAGIDVDVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESK 170
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
IT ++ VH LRAQ DAILVG+ TVL D+P+LT R ++ +P+RIILD + L
Sbjct: 171 WITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRK-NPLRIILDTKLRTPL 229
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
D+ ++ II A R + + D++ +L +L +GV SL
Sbjct: 230 DAHVVADKEAETWIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLF 289
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
VEGG+ V SF+ + V+ +I Y + +IG G P+P+ + R +
Sbjct: 290 VEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETI 349
Query: 347 GSDVCLEYIGK----NLCLQEL 364
G D+ + K +LC L
Sbjct: 350 GPDIKIVAAPKRKEESLCSLAL 371
>gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans
CJ2]
gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas
naphthalenivorans CJ2]
Length = 370
Score = 189 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 113/365 (30%), Positives = 174/365 (47%), Gaps = 10/365 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D M A+ + + +TS NP V C++ G V+G+G T G PHAE+ AL
Sbjct: 1 MELCVPDTEMMPRAVALALAAMRITSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMAL 60
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G GATAYVTLEPCSH+GR+ PC +I GI+++V + DP+ VSG+G +
Sbjct: 61 RDAAAQGHSVVGATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFE 120
Query: 118 WLSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V+ +E + + +R + K + +K+A S D +A S IT
Sbjct: 121 RLRAAGIEVEVGPGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITS 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H RA++ A+L GIGTVL D+P L RL P I++D + LD+ +
Sbjct: 181 AEARADGHAWRARACAVLTGIGTVLQDNPRLDVRLVS-TPRQPHLIVVDSRLETPLDAHL 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ +N+ AL + DL ++ L R + L VE
Sbjct: 240 FIAGRALYIYAAVQNEAKKQALEAKGATVIYLPDANGKVDLTAMVQDLGRREINELHVEA 299
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPS--PLEEGYLEKNFMCVRRDYFGSDVC 351
G+ + S I + LVD +LY + ++G G+ S PL+ D G+D+
Sbjct: 300 GSKLNGSLIRAGLVDEFLLYLAPKLLGPGQGMASFGPLQALSDAVELQFQSTDRVGADLR 359
Query: 352 LEYIG 356
+
Sbjct: 360 IVARV 364
>gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61]
gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52]
Length = 380
Score = 189 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 132/382 (34%), Positives = 184/382 (48%), Gaps = 38/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG-------------VTAYGGCP 53
D +M AL ++ VG TS NP G G P
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNP-------------AVGAVVVNGGTVVGLGAHLKAGEP 50
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAEV A+ AGE+ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G
Sbjct: 51 HAEVYAIRMAGEKARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAG 110
Query: 114 RGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
+G+ L Q GI VD + + + K +TLK A S D I A S
Sbjct: 111 KGIAKLRQAGIDVDVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESK 170
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
IT ++ VH LRAQ DAILVG+ TVL D+P+LT R ++ +P+RIILD + L
Sbjct: 171 WITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRK-NPLRIILDTKLRTPL 229
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
D+ ++ II A R + + D++ +L +L +GV SL
Sbjct: 230 DAHVVADKEAETWIITGGVSREQAAAYERLGVRVFSMPTAQTDVRDVLRLLGEQGVMSLF 289
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
VEGG+ V SF+ + V+ +I Y + +IG G P+P+ + R +
Sbjct: 290 VEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETI 349
Query: 347 GSDVCLEYIGK----NLCLQEL 364
G D+ + K +LC L
Sbjct: 350 GPDIKIVAAPKRKEESLCSLAL 371
>gi|312794193|ref|YP_004027116.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181333|gb|ADQ41503.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 371
Score = 189 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 101/361 (27%), Positives = 161/361 (44%), Gaps = 15/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A
Sbjct: 6 HSYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q L Q G
Sbjct: 66 GYLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHG 125
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + E + + + + +K+A S D I +
Sbjct: 126 IEVVEGVLQKEAESINKDFFKYMKKGIPYTAIKVAQSIDGKIATPSNKRFLFSTEEENLF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + A LV + TV++D+P L R P+R++LD ++ L+ I+KT+
Sbjct: 186 VHSLRQKYMATLVSVNTVISDNPILNARYGE-IVRQPIRVVLDTKLRIPLECNIVKTSDE 244
Query: 243 APVIIVTENDDPVL-------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
IV + + DL + L + + S+LVEGG
Sbjct: 245 YSTYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCL 352
+ + S + R+ D + IG + E + + F + +
Sbjct: 305 SLLNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKLVNTKVTTFKNSTII 364
Query: 353 E 353
E
Sbjct: 365 E 365
>gi|227537349|ref|ZP_03967398.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Sphingobacterium spiritivorum ATCC 33300]
gi|227242852|gb|EEI92867.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Sphingobacterium spiritivorum ATCC 33300]
Length = 350
Score = 189 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 104/346 (30%), Positives = 167/346 (48%), Gaps = 20/346 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + R+M L + G S NP V +IV + +IG G T+ G PHAEV A+
Sbjct: 1 MNMQ---ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAI 57
Query: 61 EEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
++ ++ + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+
Sbjct: 58 QQVKDQYPDSADRLLAESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVN 117
Query: 113 GRGLQWLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
G+GL L Q GI V+ + + + TR + R ++ LK A + D +
Sbjct: 118 GKGLGILQQAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYVILKWAETADGYMAKNTDEQ 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
I+ SK VH R++ DAILVG T L D+P LT R + ++P R+++D +
Sbjct: 178 AWISNEASKQLVHRWRSEEDAILVGTRTALIDNPSLTVR--EWEGNNPKRVLIDKQLSVP 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ I V + D I + D + +L L + S++
Sbjct: 236 ESAAIFSEDADTIVFNAVKTDWQGRIK-----YIELENYDLYLPQNILYQLYLMDIQSII 290
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+EGGA FI++ L D + RS V+ EGGI +P+ EG L++
Sbjct: 291 IEGGAKTLQLFIDAGLWDEARVIRS-KVLWEGGIKAPVVEGELKEQ 335
>gi|94264512|ref|ZP_01288299.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [delta proteobacterium MLMS-1]
gi|93455071|gb|EAT05298.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase-like [delta proteobacterium MLMS-1]
Length = 374
Score = 189 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 132/374 (35%), Positives = 182/374 (48%), Gaps = 22/374 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL
Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A GAT YVTLEPC+H GR+PPC++ II GIRRVV + DP V+ G + L
Sbjct: 61 AGEAAAGATIYVTLEPCNHLGRTPPCSEAIIAAGIRRVVYGLADPHE-VARGGAKRLESA 119
Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V ++ E + ++ R R + LK AVS D I A S ITG ++
Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LR QSDAILVG GTVLADDP LT R G + P+R++LD + ++++
Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLIQQ 239
Query: 241 LLAPVIIVTENDDP---------------VLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
A I + L ++ C DL ++L L
Sbjct: 240 SPAATWIFCAPEAATERATALEAAGARVVRLEPTPGGQSGPEPNCSGLDLWQVLRELAAN 299
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLE--EGYLEKNFMCV 341
GV LLVEGG V SF+ L D + + ++IG G+P +PL V
Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359
Query: 342 RRDYFGSDVCLEYI 355
G D+ L
Sbjct: 360 SSRRLGDDIMLRGY 373
>gi|167762046|ref|ZP_02434173.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
43183]
gi|167700138|gb|EDS16717.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC
43183]
Length = 347
Score = 189 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 155/351 (44%), Gaps = 18/351 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ +
Sbjct: 4 EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDPS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG++ L G
Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKEIPRIVIGCQDPFAKVAGRGIRKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + + ++T R +ITLK A S D I P+ +
Sbjct: 124 VITGVLEDECRSLIRRFITFHTLHRPYITLKWAESADKYIDKNREDGQPVILSTPLTSML 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + +++ + +GT A+ + + Q SP+RI+ D +LS ++ +
Sbjct: 184 VHKKRAEHNAIMVGTRTAELDNPSLTVRNWQGRSPVRIVTDRQLRLSPKLRVFDGNVRTL 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V I L +++ L +G+ SLLVEGG + SFI+
Sbjct: 244 VF------TEKPCQPQPNVEYIPIDFQRNILPQIMEHLYMQGLQSLLVEGGNILLQSFID 297
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--------KNFMCVRRDYFG 347
+ L D + S + + GI +P +NF G
Sbjct: 298 AELWDEAFVEESPLTL-LSGIKAPEIGNKAPCTNEVYFGRNFRHYSATRLG 347
>gi|332286796|ref|YP_004418707.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
Length = 374
Score = 189 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 7/356 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D +M AL + + +T+ NP VACLIV+DG ++ G T G PHAE+ AL +A
Sbjct: 3 DEGWMRQALHLAESVLYITAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAER 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + GAT YVTLEPCSHYGR+PPC +I RVV+ + DP+ V G+G+ L G
Sbjct: 63 GIDTAGATVYVTLEPCSHYGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATG 122
Query: 124 IIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + +E ++ R K + LK+A S D I +A S ITG ++
Sbjct: 123 IAVTTDICTEEALAINPGFVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H RA+S +L G+GTVLADDP++ R I+ + T
Sbjct: 183 GHHWRARSCVVLSGVGTVLADDPQMNVRHVETARPPIKAIVDTRFQVMEQARIFDGTPTW 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ LA + DL L+ L + + VE GA ++ +
Sbjct: 243 VFTCVSDPEKVHRLADRNVQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARLSGAL 302
Query: 303 INSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ ++ D +++Y + +++GEG PL++ + F + DV L
Sbjct: 303 LQAQCTDELLVYMAPVLLGEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRLRAR 358
>gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805]
Length = 372
Score = 189 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 115/358 (32%), Positives = 173/358 (48%), Gaps = 12/358 (3%)
Query: 5 SFDARF---MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
D R+ M AL + G TS NP V +++ G ++G G A G PHAEV AL
Sbjct: 6 DADQRWIPWMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVGAL 65
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG+ ARG T VTLEPC H+GR+PPC +I+ GI RVVV + DPD RV+G GLQ L
Sbjct: 66 AQAGDAARGGTIIVTLEPCCHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQRLR 125
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ V + E+E +A++ R R LK A+S D + S I+G +
Sbjct: 126 DAGVEVISGVLEAEAAQQNYAFVHRVRTGRPWGLLKWAMSLDGRTALPNGASQWISGSTA 185
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRAQ DA++VG GTV ADDP LT R GL+ P+R++L L ++I
Sbjct: 186 RTWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRRLDLPDQAQIWDQ 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++ +++ ++ + + L+ +L RG +L E G +A
Sbjct: 244 SVAPTLVVHGQDAPAEARDRLEALGLQREVLPACGPESLMAVLAQRGCNRVLWECGPELA 303
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
+ + V + + ++G +PL + +R+ D+ L
Sbjct: 304 AAALQQACVQELAAVIAPKLLGGEPARTPLGHLGFQAMEEVVVLQGLRQQRLTDDLLL 361
>gi|295088113|emb|CBK69636.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacteroides xylanisolvens XB1A]
Length = 351
Score = 189 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 165/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E K + ++T + R ITLK A S D+ I V ++ ++
Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDG--N 245
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + ++ L R + SLLVEGG + SF
Sbjct: 246 VPTLIFTEKQQPEKKNITYITINFSHNPLKQIMEAL----YQRKIQSLLVEGGRQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I++ L D + + + G+ +P + + Y+ +
Sbjct: 302 IDNELWDEAYIEKCPGRL-HSGVKAPQMDDNFSYSIEEHFERQI-----WHYVRR 350
>gi|320354106|ref|YP_004195445.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfobulbus propionicus DSM 2032]
gi|320122608|gb|ADW18154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfobulbus propionicus DSM 2032]
Length = 368
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 181/363 (49%), Gaps = 12/363 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL +R +G TS NP+V ++VKDG V+GRG G PHAEV AL +AG +
Sbjct: 5 HEWYMELALAEARKGLGRTSPNPAVGAVVVKDGKVVGRGYHHRAGTPHAEVHALADAGPQ 64
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
ARGAT YVTLEPC+H GR+PPC + I+ GI VV+ + DP+ RV+G G +L Q+G +
Sbjct: 65 ARGATIYVTLEPCNHTGRTPPCTEAILAAGIAMVVIGMADPNPRVAGGGAAYLRQRGLEV 124
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V ++E + + ++ + +K +S D I +TG S VH
Sbjct: 125 VSGVLEQPCRALNYPFIKHSTTGLPWVMMKAGLSLDGKITFRSRQGAALTGEESWRFVHR 184
Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR Q+DAIL+G+ T + DDP LT R P+R++LD +L ++++ A
Sbjct: 185 LRNQTDAILIGVETAIIDDPSLTTRLEGVADTRDPVRVVLDSCLRLPPQARMLHQRSTAE 244
Query: 245 VIIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+V ++ + + DL +L +L R +TS+LVEGGA +
Sbjct: 245 TWVVCGSEASSDREEQLVRAGARVLRLALGADGRVDLPAMLRLLGARNLTSVLVEGGAGI 304
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ RLVD ++L+ + ++G+ G P L V G+D
Sbjct: 305 HGAMYGQRLVDELLLFYAPFIVGDQGTPLVSGYSLARRDQAPRLADVALQPLGNDFLFRA 364
Query: 355 IGK 357
+ +
Sbjct: 365 LVR 367
>gi|89897925|ref|YP_515035.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
gi|89331297|dbj|BAE80890.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56]
Length = 377
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 96/332 (28%), Positives = 150/332 (45%), Gaps = 6/332 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S FM A+ NP V C+IVK+G +IG G G PHAE +A+
Sbjct: 4 FSEQQLFFMRRAIELGENGRLSAPPNPWVGCVIVKNGRIIGEGYHKKKGQPHAEEEAVNS 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
E G YVTLEPC HYG +PPC +I+ + V V + DPD RVSG+G+ L
Sbjct: 64 TTESIEGCDVYVTLEPCCHYGSTPPCVNLLIKHKVSTVYVALLDPDGRVSGKGIAALRNA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E +Y+ ++ + I +K A + D + + S IT ++
Sbjct: 124 GIRVYVGLGKEEAESSLKSYIYQRTYGKPWIVIKSAATLDGQVADSDGQSQWITCPEARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDP--ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V +RA S AI++G TVL DDP L + P+R+++D + +K+
Sbjct: 184 DVGKIRASSQAIVIGSKTVLQDDPLLTARKPSGELYSNQPLRVVVDSSGIVPPQAKVFHV 243
Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ + + + + DL +L+ L + V +LVEGG+
Sbjct: 244 PGKSLYVTTTRSSSEHIKNIEDLGVEVLVTQPRESKVDLHELVAYLSNKTVLQVLVEGGS 303
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ SF+ RL ++++LY + G+ P
Sbjct: 304 ILHTSFLKERLANALVLYLGPKIFGDQRKPLF 335
>gi|87161517|ref|YP_494408.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195585|ref|YP_500391.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87127491|gb|ABD22005.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87203143|gb|ABD30953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp.
aureus NCTC 8325]
Length = 334
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 107/341 (31%), Positives = 156/341 (45%), Gaps = 14/341 (4%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G T NP V ++VK+G ++G G G HAEVQAL+ A + A GAT Y+TLEPCSH
Sbjct: 3 QGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSH 62
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
+G +PPC II+C I +VV D + G + L GI V+ + + +
Sbjct: 63 FGSTPPCVNKIIDCKIAKVVYATKDNS--LDTHGDETLRAHGIEVECVDDERASQLYQDF 120
Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
+ ++ IT+K++ S D S IT K V+ LR + DA+L G TV
Sbjct: 121 FKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVE 180
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
DDP+ T R+ +P+++IL + + +I + I + L
Sbjct: 181 LDDPQYTTRIQD--GKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTENPN-----LTTN 233
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ +I IIY DL +L L RGV +LLVE G F+ S +D ILY + +IG
Sbjct: 234 QTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIG 293
Query: 322 EGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
G + E F V + +V L K
Sbjct: 294 GSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 334
>gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Herbaspirillum seropedicae SmR1]
gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase protein [Herbaspirillum seropedicae SmR1]
Length = 354
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 115/350 (32%), Positives = 175/350 (50%), Gaps = 9/350 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M+ AL + + + T+ NP V C+IVKD +IG G T G HAE+QA+ +A G +
Sbjct: 1 MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGAT YVTLEPCSH+GR+PPCA +I G+ RVV + DP+ V+G+GL L GI V
Sbjct: 61 RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+E E + +L R R + +K A S D + S ITG +++ H+
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ AI+ GIGT+ DD +LT R P RI++D +S ++++I+
Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIE-TPRQPRRIVIDSKLIVSPEARVIQGGNTWVFT 239
Query: 247 IVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ D A + I DL L+ L R + L VE GA + + +
Sbjct: 240 ATDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLRE 299
Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
VD +++Y + +IG+G PLE+ + G+D+ +
Sbjct: 300 GCVDELLVYLAPSLIGDGRNMFELPPLEDLSGKIGIRFHEVKQVGADLRI 349
>gi|224476858|ref|YP_002634464.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222421465|emb|CAL28279.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 349
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 119/354 (33%), Positives = 167/354 (47%), Gaps = 12/354 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RF+ A++ ++ G T NP+V ++V G ++G G G HAEVQAL+ AG++AR
Sbjct: 3 RFLENAIQLAKMAEGQTGVNPAVGSVVVNHGRIVGLGAHLKQGERHAEVQALDMAGDQAR 62
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T YV+LEPC+HYG +PPC IIE GI +VV + D + G + L GI V
Sbjct: 63 GGTIYVSLEPCTHYGSTPPCVNKIIEAGISKVVYAMKDIT--LDSPGDEILKSAGIEVVY 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
E E + + +V K +TLK++VS D S IT K V RA
Sbjct: 121 QHEVEAEKMYKDFFAAKVSKIPEVTLKVSVSLDGKQATDSGQSQWITNPGVKQDVLKNRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAIL G GTV AD+P LT R+ G E P+R+ILD LS I L +
Sbjct: 181 RHDAILTGAGTVEADNPSLTVRIEG--ERQPIRVILDKSGSLSFQENIFHDQLTPVWLYT 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
N NINII + + +L L +G+ SL VE G V+ F+ S V
Sbjct: 239 ENNAVQNK---EHLDNINIIQLEECSVHNILRDLYNKGIGSLYVEAGPNVSSQFLQSECV 295
Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++I+Y + VIG G + F + ++ + K
Sbjct: 296 QTLIIYYAPKVIGGSGKYQFYQTEEVLSLDKIPQFEIANSEIIDQNIKVSLRKK 349
>gi|325103646|ref|YP_004273300.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
gi|324972494|gb|ADY51478.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145]
Length = 347
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 103/360 (28%), Positives = 161/360 (44%), Gaps = 22/360 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---- 60
+ D+ FM A+ + G S NP V ++ DG +IG G G HAEV A+
Sbjct: 2 TNDSIFMQRAIDLALLGAGSVSPNPMVGAVVAHDGQIIGEGYHKKYGESHAEVNAIQNVI 61
Query: 61 ---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ A + +T YVTLEPC+HYG++PPCA II+ I R+V+ DP V+G+G++
Sbjct: 62 DNFKNADHLLKQSTIYVTLEPCAHYGKTPPCADLIIKHCIPRIVIGCRDPFDSVNGKGIE 121
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L G V + E+E + T+ ++R ++ LK A + + ITG
Sbjct: 122 KLLIAGKEVITGVLETECLELNRRFFTQIQKQRPYVILKWAQTANGFFAPENHQQRWITG 181
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
SK VH RA+ D ILVG T + D+P+L R ++ +P R ++D + L +
Sbjct: 182 KESKILVHQWRAEEDCILVGKNTAIIDNPQLNVR--LVKGKNPKRAVIDKNLALPPHLNL 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ + E+ ++ + +L L + V S++VEGG
Sbjct: 240 LDNKQETFIFNAIESKIVGKNKYISIEDFDHFLPQY-----ILYQLYLQDVQSVIVEGGV 294
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
SFI L D ++ S+ E GI +P +G + D GSD
Sbjct: 295 TTLQSFIKHNLWDEARIFYSEDY-WENGINAPTIKGNQ------ISTDKVGSDTLTILKP 347
>gi|299147398|ref|ZP_07040463.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
gi|298514676|gb|EFI38560.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23]
Length = 351
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 105/355 (29%), Positives = 166/355 (46%), Gaps = 19/355 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVTGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E + + ++T R +ITLK A S D I + ++ ++
Sbjct: 130 VTVGILEKECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I +
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNVP 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V A I + L++++ +L R + SLLVEGG+ + SF
Sbjct: 248 TLVF------TEKKQPARTNITYISIDFNHNTLEQIMEVLYQRKIQSLLVEGGSQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I+ L D + + + G+ +P + + Y+ +
Sbjct: 302 IDDELWDEAYIEKCPNRL-HSGVKAPQMDDKFSYSIEEHFERQI-----WHYVRR 350
>gi|295135421|ref|YP_003586097.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
profunda SM-A87]
gi|294983436|gb|ADF53901.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia
profunda SM-A87]
Length = 348
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 99/359 (27%), Positives = 167/359 (46%), Gaps = 20/359 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ +++ L+ + +G T NP V +IV +IG G G PHAEV A+
Sbjct: 4 NIHEKYIKRCLQLAENGLGSTYPNPMVGSVIVYKNQIIGEGWHQKAGEPHAEVNAVNSVK 63
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +T YV+LEPCSH+G++PPC+ II GI++VVV DP V+GRG++ L +
Sbjct: 64 NRDLLKKSTIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVVATVDPFAEVAGRGIKKLMEA 123
Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFI 178
G V + + + T +KR +I LK A S+D I V I+
Sbjct: 124 GCDVTLGVLEQEAQHLNKRFFTFHNKKRPYIILKWAQSEDGFIAPLQRKDRAPVWISNRY 183
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
SK VH RA+ AILVG T + D+P+L RL ++P+R+++D K+ S I
Sbjct: 184 SKQLVHKWRAEEQAILVGTKTAIEDNPKLNTRLYA--GNNPVRVVIDRSGKIPAASAIFD 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
++ +I L +++ +IL + S+++EGG
Sbjct: 242 GSIKTIIITENNQKITSKNLE-----YRHADFSQNLPEQIGSILFQENLQSVIIEGGLQT 296
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SFI+++L D ++ + + + G+ +P +G + + ++ Y+
Sbjct: 297 LQSFIDAKLWDEARVFSGNVQL-KMGVSAPEFQG------KLISEEKIEDNLLKTYLND 348
>gi|257869314|ref|ZP_05648967.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
gi|257803478|gb|EEV32300.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2]
Length = 359
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 14/358 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64
+M A+ + G T TNP V +IVKD ++ G G PHAE A++
Sbjct: 1 MHETYMKRAISEALKGKGQTFTNPLVGAVIVKDEEIVAVGSHMAYGQPHAEKNAIDSCSS 60
Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC HYG+ PPC I++ GI++VV+ DP+ VSG+G +L +G
Sbjct: 61 PEKLIDSTIYVTLEPCHHYGKQPPCTTAILQSGIKKVVIGQLDPNPLVSGKGKAFLESQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E E + Y T E+R + LK A + D I +A ITG + +
Sbjct: 121 VAVITGVLEKEVREINRHYNTYHEEQRPFVALKQATTLDGKIALA-GQRARITGEAALRR 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V R+ AIL+G T L D+P L R++LD + +
Sbjct: 180 VRQERSDYQAILIGSRTALIDNPTLRTE----AAFPTYRVVLDRKGETLKQQLTLFEDTS 235
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+PV++ T + ++NII L ++ L R + S+ VEGG+++ +F
Sbjct: 236 SPVLVFTTK----KVQSVFSNHVNIITTPSLTLSFVMKELYRRKIQSVYVEGGSSIHDAF 291
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR--RDYFGSDVCLEYIGKN 358
+ D +I Y S +IG G S + + F + G ++ + +
Sbjct: 292 LADGYWDQVITYLSPKLIGGNGTASFASSREVNQMFALTEVTVEPVGEELRIVGRRQE 349
>gi|311745056|ref|ZP_07718841.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
gi|311302325|gb|EAZ81787.2| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
Length = 340
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 103/336 (30%), Positives = 166/336 (49%), Gaps = 13/336 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+M AL + G S NP V C+IVK+ +IG G G HAEV A+ ++
Sbjct: 6 YMRRALELAELGRGKVSPNPVVGCVIVKEDKIIGEGYHQKYGEAHAEVNAVNSVEDQTDI 65
Query: 69 -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G+T YVTLEPC+H+G++PPCA +++ + +VV+ D + V G+G+Q L + GI V+
Sbjct: 66 VGSTVYVTLEPCAHFGKTPPCANLLVDKKVGKVVIAAFDSNPLVGGKGIQILEEAGIEVE 125
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ E + + T+ +KR ++ LK A +QD + + S I+ S+ VH
Sbjct: 126 TGLLQEEARWQNRRFFTQIEKKRPYVILKWAQTQDGFVARSDYSSKWISNSSSRRLVHQW 185
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+ DAI+VG T DDP L R +P+R+++D +LS K+ A+
Sbjct: 186 RAEEDAIMVGKNTAKYDDPALNVR--DWVGKNPLRLVIDSKLELSQSLKLFDQAVPTICY 243
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ ++ + L ++L L R + SLLVEGG+ + + FI
Sbjct: 244 NTQKTEES-------GNLEFVKLKPGFSLDQILEDLHNRNIQSLLVEGGSFLLNKFIELG 296
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
L D ++ S+ G GI +PL +N +
Sbjct: 297 LWDEARIFTSRNKFG-EGIKAPLIPKPSSENIPVLE 331
>gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426]
gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino)uracil reductase )
[Geobacillus kaustophilus HTA426]
Length = 380
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 132/382 (34%), Positives = 184/382 (48%), Gaps = 38/382 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------TAYGGCP 53
D +M AL ++ VG TS NP G G P
Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNP-------------AVGAVVVNGGTVVGLGGHLKAGEP 50
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAEV A+ AGE+ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G
Sbjct: 51 HAEVYAIRMAGEKARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAG 110
Query: 114 RGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
+G+ L Q GI VD + + + K +TLK A S D I A S
Sbjct: 111 KGIAKLRQAGIDVDVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESK 170
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
IT ++ VH LRAQ DAILVG+ TVL D+P+LT R ++ +P+RIILD + L
Sbjct: 171 WITSSAAREDVHRLRAQHDAILVGVNTVLTDNPKLTVRFGEKRK-NPLRIILDTKLRTPL 229
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
D+ ++ II A R + + D++ +L +L +GV SL
Sbjct: 230 DAHVVADKEAETWIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLF 289
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346
VEGG+ V SF+ + V+ +I Y + +IG G P+P+ + R +
Sbjct: 290 VEGGSRVHDSFLRAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETI 349
Query: 347 GSDVCLEYIGK----NLCLQEL 364
G D+ + K +LC L
Sbjct: 350 GPDIKIVAAPKRKEESLCSLAL 371
>gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae]
Length = 360
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 113/356 (31%), Positives = 172/356 (48%), Gaps = 18/356 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A+++A G E
Sbjct: 1 MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGATAYVTLEPCSHYGR+PPCA+ ++E GI P+ VSGRG L + GI V
Sbjct: 61 RGATAYVTLEPCSHYGRTPPCAKGLVEAGI-APWCGDGGPEPAVSGRGYAMLREAGIEVR 119
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E E + +++R R + +K+A S D + S ITG ++ H
Sbjct: 120 GGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHAW 179
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ +IL GIGTV DDP+L R P R+++D L +++++ P++
Sbjct: 180 RARACSILTGIGTVRRDDPQLNVRGID-TPRQPRRVLIDARLDLPHEARLMAG--PPPLV 236
Query: 247 IVTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
E D A A + DL +L L GRG L VE G ++
Sbjct: 237 FCGELDASARARADALRRRGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEAGRTLSG 296
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
+ + + LVD +++Y + ++G + + G D+ +
Sbjct: 297 ALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDLRI 352
>gi|325953844|ref|YP_004237504.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
gi|323436462|gb|ADX66926.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922]
Length = 345
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 100/362 (27%), Positives = 159/362 (43%), Gaps = 22/362 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M+ L+ + +G T NP V +IV + +IG G T++ G PHAEV A+
Sbjct: 1 MTQDRTDEFYMNRCLQLAANGLGNTYPNPFVGSVIVHNQNIIGEGFTSFYGGPHAEVNAI 60
Query: 61 EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
E +T YVTLEPC+H+G++PPC+ IIE I RVVV DP V+G G+
Sbjct: 61 HSVEKKELLPSSTLYVTLEPCAHFGKTPPCSDLIIEHKIPRVVVGCLDPFALVNGEGINR 120
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ GI V + E E + T +KR ++ LK A + + I+
Sbjct: 121 MRTHGIEVSVGILEKECLELNRRFFTIHQKKRPYVILKWAQTANGYFAPKNHTQQWISNR 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
SK VH R Q AILVG T + D+P+L R +Q +P+R+++D +
Sbjct: 181 FSKQLVHWWRTQEQAILVGKNTAIVDNPQLNSR--LVQGRNPIRVLIDYDLSTPTTHYLF 238
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
L + + V + +L+++L IL + + S+++EGG+
Sbjct: 239 DQTLPTIIF------NKVKGGKNELIEYIQLQSKENNLEEILRILYQKNIQSIIIEGGSR 292
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCLEYI 355
+FI L D ++ S + E+G + + +D Y
Sbjct: 293 TLQTFIEQNLWDEARVFSS---------STVWEDGIFAPHLHKKPSKTQIIDNDFLRIYR 343
Query: 356 GK 357
Sbjct: 344 ND 345
>gi|315186245|gb|EFU20006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Spirochaeta thermophila DSM 6578]
Length = 362
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 4/359 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D FM AL +R G TS NP V ++VKDG V+G G G PHAEV AL E
Sbjct: 1 MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSE 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG EARGA YVTLEPC H+GR+PPC I++ G+RRVVV DP+ +V+G+GL L++
Sbjct: 61 AGGEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + E + +++R R + K+A S D I + S ITG S+
Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRR 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+VH LRA SD ++ GIGTVLADDP T R+ + P ++LD +L + +++++
Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREGT 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300
+ V + + + + R + + +G+ GV ++VE GA V
Sbjct: 241 VVMVGPGVDEGWRGEMERRGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAGVTG 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+F+ + +VD ++++ + V+GEG + + EG E+ + G D + + +
Sbjct: 301 AFLEAGVVDELVVFVAPRVLGEGRGWVEGRVLEGLGEREWEVREVRGVGEDAVVRCVRR 359
>gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
Length = 368
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 107/351 (30%), Positives = 165/351 (47%), Gaps = 11/351 (3%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
ALR + + +++ NP V C++V DG ++G+G T G PHAEV AL +A G +
Sbjct: 9 REALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDV 68
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGATAYVTLEPC+H GR+ PC+ +I GI RVV ++DP+ V+G+G L G+ V+
Sbjct: 69 RGATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVE 128
Query: 128 RMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E + + +R V + K A S D ++ S IT ++ H
Sbjct: 129 VGPGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAW 188
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++ A+L GIGTVL D+P L R P +++D + D+ + +
Sbjct: 189 RARACAVLTGIGTVLDDNPRLDVRA-LQTPRQPHVVVVDSQLQTPPDAHLFIAERACYIY 247
Query: 247 IVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ND AL R DL +L L RG+ L VE G + S +
Sbjct: 248 TAVQNDVKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLLR 307
Query: 305 SRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
LVD +++Y + ++G G P + + G+D+ +
Sbjct: 308 EGLVDEMLVYLAPTLLGPGLSIANIGPFDNLAQGVAMDFTSVERVGADIRI 358
>gi|218264485|ref|ZP_03478318.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
DSM 18315]
gi|218221978|gb|EEC94628.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii
DSM 18315]
Length = 354
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 112/328 (34%), Positives = 171/328 (52%), Gaps = 16/328 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +E
Sbjct: 12 EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 71
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
R +T YV+LEPCSHYG++PPCA+ II+ GI RVVV DP VSGRG++ L + G+
Sbjct: 72 LLRDSTIYVSLEPCSHYGKTPPCAELIIKKGIPRVVVGTLDPFPEVSGRGVRMLREAGVE 131
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISK 180
V + E E + A++T Q+ KR ++ LK A S D + A V ++ +
Sbjct: 132 VVTGVLEEEARTLNPAFMTFQIRKRPYVYLKWAQSADGFMDVRREDATESPVLLSSAETL 191
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH LR++ AI+VG T L D+P LT R Q P+R++LD KL S ++
Sbjct: 192 RRVHRLRSEVAAIMVGTRTALLDNPSLTVRHWAGQS--PVRVVLDRTLKLPAGSHLLDGM 249
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ V E + + I + L ++L L + + SL+VEGGA +
Sbjct: 250 VRTLVFTAAEVE------SRPNVEYVRIDFEQEVLPQVLQYLYEQNLNSLMVEGGAGLLE 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
SF+++ L D + + V+G G+ +P
Sbjct: 304 SFLDAGLWDEAWVETAPAVLGA-GVKAP 330
>gi|260662243|ref|ZP_05863139.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
28-3-CHN]
gi|260553626|gb|EEX26518.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum
28-3-CHN]
Length = 352
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 105/356 (29%), Positives = 152/356 (42%), Gaps = 7/356 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + +
Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G
Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V+ ++ + + Y ++ IT K A+S D + A + IT ++
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQWPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA AI+VG GTVLADDP L C L + + D + A
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQLFPPVRVILDRAGRLLDYQDRFVFTDASA 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ T ++ + D +LL + SL VEGG AV
Sbjct: 242 PTWLVTTNRA---ATKVDWPAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTEL 298
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ V+ +I Y +IG+ G+ F G D+ ++
Sbjct: 299 FQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTA--FTHRTVTQLGDDIRIDERNDE 352
>gi|257066652|ref|YP_003152908.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
20548]
gi|256798532|gb|ACV29187.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM
20548]
Length = 357
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 115/349 (32%), Positives = 164/349 (46%), Gaps = 12/349 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M +R G TNP V +++K+G +I +G C HAE+ E A GA
Sbjct: 7 MRECFDLARKGAGKVLTNPMVGAILIKNGEIIAKGYHKSNTCDHAEIDCFNNLKESAEGA 66
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T V LEPCSH+G+ PPC +I+ ++RVV+ D + +V GL L + GI V +
Sbjct: 67 TLIVNLEPCSHFGKHPPCVDEVIKRKVKRVVIANLDTNPKVD--GLSKLKEAGIEVITGV 124
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E EG+ + R + LK A S D I A S IT S+ VH LR++
Sbjct: 125 LEDEGRKLNEKFFFNMENNRPLVALKYAQSLDGKIATASFDSKWITNEESRAYVHKLRSE 184
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAILVG T+ D+P LT R+ G +P RIIL + D ++ + I T
Sbjct: 185 YDAILVGANTLRQDNPRLTSRIEG--GVNPYRIILSDKLDIDKDREVFRENADKKTYIAT 242
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+D + A + DLK LL L R + S+LVEGG+ + +SF+ LVD
Sbjct: 243 ISDKDIDINA--EIIRCKEKDGRVDLKDLLDKLYERNIGSVLVEGGSIINNSFLEEDLVD 300
Query: 310 SIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353
I + + I++ G + + EG K F FG+DV E
Sbjct: 301 KIYQFMAPIIVSGLDSRSAFIGEGAKVIKDAKRFSIDDIKRFGTDVMFE 349
>gi|260172134|ref|ZP_05758546.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D2]
gi|315920443|ref|ZP_07916683.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694318|gb|EFS31153.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 351
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 109/344 (31%), Positives = 163/344 (47%), Gaps = 14/344 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + NP V +IV +G +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182
V + E E + + ++T R ITLK A S D+ I M V ++ ++
Sbjct: 130 VIVGVLEEECQSLIRRFITFNTLHRPFITLKWAESADHFIDMERTSGMPVKLSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I +
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDENVP 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V A I + LK+++ +L R + SLLVEGG+ + SF
Sbjct: 248 TLVF------TEKKQPARTNITYISIDFNHNTLKQIMEVLYQRKIQSLLVEGGSQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
IN L D + + + G+ +P + F
Sbjct: 302 INDELWDEAYIEKCPSRL-HSGVKAPQINNNFSYSIEEHFERQF 344
>gi|305667257|ref|YP_003863544.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
gi|88709304|gb|EAR01537.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170]
Length = 350
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 108/359 (30%), Positives = 169/359 (47%), Gaps = 22/359 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D +M AL ++ +G T+ NP V ++V + +I G T+ G HAEV A+
Sbjct: 2 SLDHLYMQRALLLAKNGLGTTAPNPMVGAVLVCNEKIIAEGYTSPYGGAHAEVNAINSVE 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ +T YVTLEPCSH+G++PPCA II+ I RVV+ D +V+G+G + L +
Sbjct: 62 DKSILANSTLYVTLEPCSHHGKTPPCADLIIKHNIPRVVIGTLDSHEKVAGKGKRMLEES 121
Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG------SVPIT 175
G V ++E+ K +LT KR +I LK A + D I IT
Sbjct: 122 GCKVTLGVLENACKEHHKRFLTFHQRKRPYIILKWAQTSDGFIAPDKNKRKAKAEPYWIT 181
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
S+ VH R++ AILVG TVL D+P+L R P+RI++D + S
Sbjct: 182 NSYSRQIVHKWRSEEQAILVGTKTVLDDNPKLNTRSWAGTS--PIRIVMDKKLN--IGSN 237
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ +P I++T+N D A +I ++ +L R + S+L+EGG
Sbjct: 238 HHVLDVSSPTIVITQNTDEDKRAA--NIAYEVIDFSKNQTTQICQVLYKRNIISVLIEGG 295
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A +FI+ L D ++ + + G+ +P N + SD+ Y
Sbjct: 296 AKTLQTFIDENLWDEARVFTGKNNF-KKGLKAP------RMNKEAFKSITIESDILNIY 347
>gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
Hxd3]
gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans
Hxd3]
Length = 363
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 183/361 (50%), Gaps = 10/361 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM+ AL + G TS NP V ++V+DG V+G+G A G PHAEV A+++AGE
Sbjct: 2 DDTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVGQGFHAAAGKPHAEVVAIDDAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA YVTLEPC+H GR+PPC + I + GI RVVV D + V+G G+Q+L +GI
Sbjct: 62 LARGADLYVTLEPCNHTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRGIA 121
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E K + + R +T+K A++ D I S +TG ++ VH
Sbjct: 122 VTVGVCEAEAKKQIEWFAKYVTTGRPFVTVKCAMTLDGRIATRTGDSKWVTGEAARAFVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R SDAILVG+GT AD+P LT R+ G++ PMRI+LD + D+ + A
Sbjct: 182 RMRHASDAILVGVGTANADNPRLTARVEGMRTRDPMRIVLDTKLSIREDAAMFDLDSSAE 241
Query: 245 VIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+IV K D+ L+ L G+TSLL+EGG V
Sbjct: 242 TLIVVGPGHDKKKRDRLKGKARFFDAALAIGRIDMAGLMDGLGKMGITSLLIEGGGQVIG 301
Query: 301 SFINSRLVDSIILYRSQIVIGE-GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + +VD + + + ++G G+P + E+ V F D+ +E
Sbjct: 302 AAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQEQMKNALPVRNVSVTRFDDDILIEGY 361
Query: 356 G 356
Sbjct: 362 V 362
>gi|262196460|ref|YP_003267669.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
14365]
gi|262079807|gb|ACY15776.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM
14365]
Length = 367
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 114/358 (31%), Positives = 166/358 (46%), Gaps = 21/358 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+ L +R G T+ NP V C+IV G VI G G PHAE +AL + A G
Sbjct: 1 MARCLELARRAEGRTAPNPMVGCVIVAPSGEVIAEGYHRRAGAPHAEAEALAQLDGRAPG 60
Query: 70 ATAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
T YV LEPC H + PCA + E GI R+VV + DP R G WL+++G+ V
Sbjct: 61 CTMYVNLEPCRHRRKRRTVPCAPAVAEAGIARLVVGMGDPI-RSHAGGAAWLARQGVSVT 119
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
R + ++ + ++TR + R LK A++ D + S ITG ++ H L
Sbjct: 120 RGVLRADCRDLNRGFITRARKGRPWFALKAAMTLDGKVATRTGDSQWITGPQARAHGHGL 179
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK--IIKTALLAP 244
R + DA+LVGIGTVLADDP LT R P+R+++D + LD++ T+ A
Sbjct: 180 RDRLDAMLVGIGTVLADDPRLTAR-GARDARDPVRVVVDSRLRTPLDARLLPANTSSPAR 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
II P ++ DL+ L L + ++LVEGGA +
Sbjct: 239 TIIAASERAPRTRERRLADAGAEVWRVGAGPRVDLEALAQRLAAAELNTVLVEGGAELHA 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCV-RRDYFGSD 349
+F+ + L D ++LY + +V+G G S L F + G D
Sbjct: 299 AFVAADLADELLLYVAPMVLGGRGRDSGLGWLGGAGVERLADATRFSFRGDSESLGED 356
>gi|319900207|ref|YP_004159935.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacteroides helcogenes P 36-108]
gi|319415238|gb|ADV42349.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacteroides helcogenes P 36-108]
Length = 347
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 100/333 (30%), Positives = 152/333 (45%), Gaps = 14/333 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ ++ + T+ NP V +IV DG +IG G + G HAEV A+ +
Sbjct: 3 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVHCGEAHAEVNAIRSVKDPS 62
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ AT YV+LEPCSHYG++PPCA IIE I R+++ DP +V+GRG+Q L G
Sbjct: 63 LLQRATIYVSLEPCSHYGKTPPCADLIIEKQIPRIIIGCMDPFSKVAGRGIQKLKDAGRE 122
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182
V + E E K + ++T +R +ITLK A S D I V ++ +
Sbjct: 123 VIVGVLEEECKSLIRRFVTFHTLRRPYITLKWAESADGYIDSYRTNGNPVVLSSPFTSML 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R + AI+VG T D+P L R + + D L T L
Sbjct: 183 VHKQRTEHSAIMVGTHTAKLDNPRLNVRHWYGHPPVRIVLDKDRALPTDLHLFDGDTLTL 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I L +++ L RG+ SLLVEGG+ + SF
Sbjct: 243 VFT--------ETPHDLLPNVEYLPINYQQDILPQIMEELYTRGLQSLLVEGGSILLQSF 294
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
I++ + D I + + I++ G+ +P G
Sbjct: 295 IDTGIWDEIFVEEAPILL-HSGVKAPEISGKNP 326
>gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1]
Length = 360
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 112/351 (31%), Positives = 166/351 (47%), Gaps = 4/351 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I G V+G G G PHAEV AL AG ARG
Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC+H GR+ PCAQ +IE G+ RVV V DP+ + SG G + +
Sbjct: 61 GTAYVTLEPCNHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGATLRAAGIATEAGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E E + A+LT R H+ K A + D I A S I+ S+ VH LRA+
Sbjct: 121 LEQEAEEGNAAWLTSVRRGRPHVLWKYAATLDGRIAAADGTSRWISSPESRADVHRLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DA++VG GT+ ADDP L R + + + + + ++ AP +I
Sbjct: 181 ADAVVVGSGTLRADDPHLAVRGRPGTDPADQPLRVVLDTRATVRPGARVLDDAAPTLIAV 240
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D L + + LL L RGV S+L+EGG +A +F+ + VD
Sbjct: 241 AEDADTGHLPGVDLVRLPADENGISVHALLAELHRRGVRSVLLEGGPTLAGAFVAAGAVD 300
Query: 310 SIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++ Y + +++G G + ++ G D+ + + +
Sbjct: 301 KVVGYLAPVLLGAGRTALGDAGIDTIADALRLRITETVRIGPDLRVTAVPE 351
>gi|126663421|ref|ZP_01734418.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
BAL38]
gi|126624369|gb|EAZ95060.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
BAL38]
Length = 346
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 14/344 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ ++ + ++ +G T NP V +IV + +IG G G PHAEV A+
Sbjct: 2 TTHEFYIKRCIELAKNGLGTTYPNPLVGSVIVYENKIIGEGWHKKAGEPHAEVNAVNSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ + AT YV+LEPCSH+G++PPC II I VVV DP +V+G G++ L +
Sbjct: 62 DKSLLKEATIYVSLEPCSHFGKTPPCCDLIIVNEIPNVVVGTVDPFAKVAGNGIKKLVES 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFI 178
G V + E E + T ++R +I LK A + + I + IT
Sbjct: 122 GKKVTVGILEDECNELNKRFFTFHQKQRPYIILKWAETANGFIAPISKEEKSPIWITNQY 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH R + AILVG TVL D+P+L R E++P+R++LD K+S + +
Sbjct: 182 SRQLVHKWRTEEQAILVGTNTVLDDNPKLDARDFS--ENNPIRVVLDKSGKVSKNYHVKD 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ I + + N D ++ + IL + S+++EGG
Sbjct: 240 NSQKTIFIT-----ESEKYASTENCNYENTIFDVNLVRSICDILYKNNIQSIIIEGGTKT 294
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
SFI++ L D ++R + + + GI +P+ G F +
Sbjct: 295 IQSFIDANLWDEAKVFRGKKIF-QNGIIAPIISGNPVARFEIMN 337
>gi|294054578|ref|YP_003548236.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
DSM 45221]
gi|293613911|gb|ADE54066.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis
DSM 45221]
Length = 369
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 96/366 (26%), Positives = 146/366 (39%), Gaps = 14/366 (3%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S S +M+ AL+ + G T NP V +IV+DG ++ G G PHAE++A
Sbjct: 1 MSASHSEHEFYMARALKLAAQGWGTTHPNPMVGAVIVEDGAIVAEGWHTAAGQPHAEIEA 60
Query: 60 LEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
L G A A YVTLEPCS GR+ C I+ GI+ VV+ DP+ +G GL
Sbjct: 61 LAALGRAPASDAVLYVTLEPCSTSGRTGACTDAILRAGIQNVVIGATDPNPDHAGNGLDL 120
Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + G+ V + + L+ + V + I KIA + D + S +TG
Sbjct: 121 LREAGVHVQAGILEQECDDLNLIFNHWIVRQSPLIAAKIATTLDGKFAASNGQSKWVTGP 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-----SL 232
+++ V R AI V T +AD+P LT R P+R + D + L
Sbjct: 181 LARADVMHWRRYFPAIAVTAQTAVADNPSLTSR-LEDGTWCPLRFVFDRNLATLERLGDL 239
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
A V +D L + + D D+ + + +
Sbjct: 240 QLYNDSFAENTIVCCSEASDPKPLLDVGIRCWQFPVVDDHLDIDAFRRRCFEESIAGVYI 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFG 347
E G + + I +R VD + Y S + + G E N +R F
Sbjct: 300 EAGPGLMTAMIEARFVDYVFHYLSPRYMSDSGSTGIGSARETESMGETLNLEQIRYANFE 359
Query: 348 SDVCLE 353
D+ +
Sbjct: 360 PDLLIR 365
>gi|29349136|ref|NP_812639.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341044|gb|AAO78833.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron
VPI-5482]
Length = 339
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 167/353 (47%), Gaps = 19/353 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M + ++ + + NP V +IV DG++IG G G HAEV A+ ++
Sbjct: 1 MRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKSLLS 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G V
Sbjct: 61 RSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGREVTV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQVHL 185
+ E E + + ++T R ITLK A S D+ I V ++ ++ VH
Sbjct: 121 GVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSMLVHK 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA++DAI+VG T L D+P LT R +P+RI+LD L ++ + V
Sbjct: 181 KRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEVPTIV 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ I L +++ +L + + SLLVEGG+ + SFI++
Sbjct: 239 FTAE------KHPDKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSFIDA 292
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L D + + + + G+ +P + NF +F + Y+ +
Sbjct: 293 ELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW-HYVFEK 339
>gi|283851293|ref|ZP_06368575.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
gi|283573243|gb|EFC21221.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B]
Length = 383
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 90/371 (24%), Positives = 165/371 (44%), Gaps = 19/371 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L +A
Sbjct: 2 ASDADFMARALVLAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLHDAE 61
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G + GAT YVTLEPC+H+G++PPC++ +++ + RVVV DP+ G
Sbjct: 62 KKGVDPAGATMYVTLEPCNHFGKTPPCSRTLLDARVGRVVVGCLDPNPVAGGGAELLRQG 121
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ ++ E + + ++ + R +T+K+A++ D I S ++G S+
Sbjct: 122 GVDVTVGVLALECRDAIADFVVWKTLGRPFVTVKLAMTLDGRIASRTGDSGWVSGEASRA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+VH +RA A+LVG GT+ AD+P LT R + P+ + + +
Sbjct: 182 RVHAMRAACQAVLVGGGTLAADNPRLTHRLDGGPLARNPQPLAVAVTRRLPAPDGPLALV 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--------LLTILVGRGVTSL 290
++I T A + + + + L+ + V ++
Sbjct: 242 RDRPEQLVIFTGKAAAAGPAAAKLTALGVRVFGLPEKADGGLDLLPGLVRLRTEANVYTV 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDY 345
L EGG +A + + L+D + ++ + V+G+ + + + F V +
Sbjct: 302 LCEGGGGLAATLLAQGLLDELTVFYAPKVLGDDKAVAGFSGLAVPRMAGAAPFRFVATER 361
Query: 346 FGSDVCLEYIG 356
G D+ +
Sbjct: 362 VGEDLMVTARP 372
>gi|325977849|ref|YP_004287565.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325177777|emb|CBZ47821.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 351
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 108/352 (30%), Positives = 159/352 (45%), Gaps = 12/352 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63
+M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA
Sbjct: 1 MHENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEA 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +G
Sbjct: 61 PEELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + Y KR ++ LK AVS D I +T +
Sbjct: 121 IEVVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKI-AVLGKRTALTDDETNRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AILVG TVL D+P+L L + + + +
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPQLFGAGTSLYPPVRVI------LDETGRIFDKRELQI 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+A +I +I + +L L + + S+ VEGGA V +F
Sbjct: 234 FKNQSAPVYIFSRRQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCL 352
+ S L D +I Y + VIG G + +E+ + G+++ L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDLQDFSVQTIGTNLRL 345
>gi|304320114|ref|YP_003853757.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
+5-amino-6-(5-phosphoribosylamino)uracil reductase
(RibD) [Parvularcula bermudensis HTCC2503]
gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase
+5-amino-6-(5-phosphoribosylamino)uracil reductase
(RibD) [Parvularcula bermudensis HTCC2503]
Length = 366
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 101/363 (27%), Positives = 155/363 (42%), Gaps = 8/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A G T+ NP V C++VK G ++G G G HAE+ AL+
Sbjct: 1 MTLTDDICMDRAAALGELGAGFTAPNPMVGCVLVKGGQIVGEGYHPRPGADHAEIAALKA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG EARGA AYVTLEPC+HYG +PPC + +IE G+ VV V DP+ ++ G + L
Sbjct: 61 AGAEARGAVAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADPNP-LASGGRETLQAA 119
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
GI V A+ R + K A + D + G S ITG ++ +
Sbjct: 120 GIAVRAHPTLAASRLTDAWRFSLTADRPWVAAKFAATLDGRVATRGGDSQWITGPAARAR 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR +S AI+VG+GTVLAD+P L R G +++I D + + + +
Sbjct: 180 SHDLRQRSGAIVVGVGTVLADNPALNPRPEGRAAAETLKVIFDSQARTPPHAACLSSPGP 239
Query: 243 APVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+I + ++ L + G S++VEGG +
Sbjct: 240 VLLITAEDAPGAAKSALKESGAHIISVQRENEGLCLRSALHCLRADFGCLSIMVEGGGRL 299
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
SF ++ L+D + + + ++G G V + G D +
Sbjct: 300 LGSFADAGLIDEVWAFLAPKILGGGQCAVDGHGPSRIGEAMALTDVSIEMAGPDFLIRGR 359
Query: 356 GKN 358
Sbjct: 360 VPR 362
>gi|325478589|gb|EGC81701.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 357
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 149/349 (42%), Gaps = 12/349 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M + G TNP V ++ KDG +I RG HAE+ E A GA
Sbjct: 7 MRECFDLALKGSGKVLTNPMVGAVLYKDGKIIARGYHKSYYDDHAEIDCFNNLNESAEGA 66
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T V LEPCSH+G+ PPC +I ++RVV+ D + +V G+ L + GI V +
Sbjct: 67 TLVVNLEPCSHFGKHPPCVDEVIRRKVKRVVISNTDTNPKVD--GISKLKEAGIEVITGV 124
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E EG+ + R + LK A S D I S I+ S+ VH LR+
Sbjct: 125 LEEEGEKLNEKFFFNMKYNRPLVALKYAQSLDGKIATENFDSKWISNEESRLFVHKLRSD 184
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI+VG T+ D+P LT R+ + + + L + + +
Sbjct: 185 YDAIIVGRNTLETDNPRLTSRITNGVDPFRVIVTSKAKLDLGYEVFKENSDNKTII---- 240
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ + K DL LL + + S+LVEGG+ + +SF+ + LVD
Sbjct: 241 ATNSKIDLGEGVKVLTLKDKNGSVDLNDLLDRIYELNIGSVLVEGGSVLNNSFLEADLVD 300
Query: 310 SIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353
I + + IV+ G+ + + +G K F FGSDV E
Sbjct: 301 KIYQFMAPIVVSGKNSRSAFVGKGAKLIKDAKRFRIDEIKRFGSDVMFE 349
>gi|312977170|ref|ZP_07788918.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
CTV-05]
gi|310895601|gb|EFQ44667.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus
CTV-05]
Length = 355
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 98/354 (27%), Positives = 160/354 (45%), Gaps = 8/354 (2%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+
Sbjct: 1 MILMEKDNFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAI 60
Query: 61 EEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ E+ +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L
Sbjct: 61 SKLTPEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAKL 120
Query: 120 SQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ G+ V + ++ Y IT+K A S DN + M PIT
Sbjct: 121 QENGVQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQA 179
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
QVH RA AI++G T + DDP L + + I L +++
Sbjct: 180 VYQQVHSERADYQAIMIGSSTAIIDDPILRTNVKSDYPPIRIIIDRRGRLLNHLRLRLLS 239
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + F I II+ ++++ L + + S+ VEGG +
Sbjct: 240 DTNPTWIFTPNKQMSK---NNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTL 296
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +N V+ +I Y + I +G+ G+ + + V++ FG++ +
Sbjct: 297 EKAIMNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNNERI 348
>gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440]
gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Salinispora tropica CNB-440]
Length = 353
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 110/362 (30%), Positives = 166/362 (45%), Gaps = 24/362 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ AL A
Sbjct: 5 SVDEA-MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVALAHA 63
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARG TA VTLEPC H GR+ PC+ +++ G+ RVV+ V DP + + G L G
Sbjct: 64 GERARGGTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDP-NQAASGGAATLRAAG 122
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ VD + + + T ++ K A + D A S+ IT ++
Sbjct: 123 VRVDLGVRAAEAEAGNIAWLTSTRRGWPYLLWKYAATLDGRSAAADGTSMWITSEAARMD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKT 239
VH LR DA+L G+GTVLADDP LT R P+R+++D + +++
Sbjct: 183 VHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGQTPAGARVRDD 242
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
A + E DL LL L RGV + L+EGG +A
Sbjct: 243 AAPTWIATADEVGTDSA--------------GRVDLPALLAALHQRGVRAALLEGGPRLA 288
Query: 300 HSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ + LVD I+ Y + ++G G + + + + G D+ + +
Sbjct: 289 GAFLAAGLVDKIVGYVAPRLLGAGPTALADAGVTTITDAIDCEVIDVTQVGPDLRITALP 348
Query: 357 KN 358
+
Sbjct: 349 RK 350
>gi|306830959|ref|ZP_07464121.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426982|gb|EFM30092.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 351
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 108/352 (30%), Positives = 159/352 (45%), Gaps = 12/352 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63
+M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA
Sbjct: 1 MHENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEA 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +G
Sbjct: 61 PEELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + Y KR ++ LK AVS D I +T +
Sbjct: 121 IEVVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKI-AVLGKRTALTDDETNRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AILVG TVL D+P+L L + + + +
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPQLFGAGTSLYPPVRVI------LDETGRIFGKRELQI 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+A +I +I + +L L + + S+ VEGGA V +F
Sbjct: 234 FKNQSAPVYIFSRRQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCL 352
+ S L D +I Y + VIG G + +E+ + G+++ L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDLQDFSVQTIGTNLRL 345
>gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470]
Length = 434
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 116/368 (31%), Positives = 177/368 (48%), Gaps = 13/368 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +FM+ AL + +G T NP V ++VKDG +IG G + G PHAEV A
Sbjct: 1 MRI-DDDKKFMARALELAANGMGHTRPNPMVGAVLVKDGEIIGEGWHEFYGGPHAEVNAF 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ + GAT YVTLEPC HYG++PPCA I+ + RVVV + DP+ VSG+G++ L
Sbjct: 60 ADCRADPAGATLYVTLEPCCHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKLK 119
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFIS 179
GI V + + L+ + + ++ L K AVS D S I+ S
Sbjct: 120 DAGIFVTTGVMEKEAQVLNEVFMKFITEKKPFVLYKSAVSMDGKTACHTGKSQWISSEES 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LR A++ G GT+ ADDP LT R G P+RII+D +S++S++
Sbjct: 180 REEVRTLRGLYAAVMAGAGTIAADDPLLTARTEG--LEDPVRIIVDGKLSVSMESRVFGG 237
Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGG 295
V+ + + V A + + D L ++G +G+ S+L+EGG
Sbjct: 238 ESRVIVLTTSSAASEKVKAFQSKGIEVIFADSDTEGCVDLEAAMIGLAVKGIDSILLEGG 297
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350
A A + + +VD I Y + I+IG P + +R + G D+
Sbjct: 298 AETAAAAFEAGIVDKIRFYMAPILIGGKDAPGAVGGTGAALIPEAVQLENIRTERSGVDL 357
Query: 351 CLEYIGKN 358
+E K
Sbjct: 358 VVEGYVKK 365
>gi|154491828|ref|ZP_02031454.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
43184]
gi|154088069|gb|EDN87114.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC
43184]
Length = 395
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 113/328 (34%), Positives = 172/328 (52%), Gaps = 16/328 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +E
Sbjct: 53 EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 112
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
R +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + GI
Sbjct: 113 LLRDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGTLDPFPEVSGRGVRMLREAGIE 172
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISK 180
V + E E + A++T Q+ KR ++ LK A S D I + + + +
Sbjct: 173 VVTGVLEEEARALNPAFMTFQIRKRPYVYLKWAQSADGFIDIRREDASVPSVLLSSAETL 232
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH LR++ AI+VG T L D+P LT R + P+R++LD KL + S ++ A
Sbjct: 233 RRVHRLRSEVAAIMVGTRTALLDNPSLTVRHWAGRS--PVRVVLDRTLKLPVGSHLLDGA 290
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ V E + + I L ++L L G+ + SL+VEGGA +
Sbjct: 291 VPTLVFTAVEVE------SRPNVEYVQIDFGQEVLSQVLQYLYGQNLNSLMVEGGAELLE 344
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
SF+++ L D + + +V+G G+ +P
Sbjct: 345 SFLDAGLWDEAWVETAPVVLGA-GVKAP 371
>gi|146295833|ref|YP_001179604.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409409|gb|ABP66413.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 371
Score = 187 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 100/361 (27%), Positives = 161/361 (44%), Gaps = 15/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M AL ++ L NP V +IVK+G +IG+G G HAEV A+E+A
Sbjct: 6 HSYYMHIALELAKKASPLVLPNPRVGSVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + +T YV+LEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q G
Sbjct: 66 GHSLKNSTMYVSLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHG 125
Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+V+ ++E E + + +I +K+A S D I
Sbjct: 126 IKVVEGILEKEAESVNKEFFKYMKTGIPYIAIKVAQSIDGKIAKPSGERFIFNTEDENVF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + A +V + TV++D+P L R G P+R++LD ++ L+S I+KT+
Sbjct: 186 VHSLRQKYMATMVSVNTVISDNPILNAR-YGQIVRQPIRVVLDSKLRIPLESNIVKTSDE 244
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEGG 295
V + I + + L+ L + + S+LVEGG
Sbjct: 245 YSTYTVCSENVNDTQKIEFLSQKGIKIIFAKSSEDGHLDLLDALSKLAQQKIVSVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCL 352
+ + S + R+ D + IG + E + F + +
Sbjct: 305 SFLNFSLLKQRIADYWYSLIFNVFIGGQNTKGVVGAEGFEQFFPKLANTKVTTFKNSTII 364
Query: 353 E 353
E
Sbjct: 365 E 365
>gi|116617932|ref|YP_818303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|116096779|gb|ABJ61930.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 344
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 20/353 (5%)
Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A + + T NP V +IVKDG VI G G HAE+ A
Sbjct: 3 DLTWMKLAADEAIRAMPYQTFENPRVGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62
Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ GAT YVTLEPCS G+ CA I G++RVVV DP+ +G+G++ L G
Sbjct: 63 KTEFLGATLYVTLEPCSTQGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNGKGIKMLRSAG 122
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I VD + E K A+ + ++ LK+A+SQ+ + +T ++ V
Sbjct: 123 ITVDVLNTVENKEINPAFHYFYTTRLPYVQLKLAMSQNGFVAEKFGKRKKLTDELADTDV 182
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA AI++G T++ D P LT R + P+R+++D +L + L
Sbjct: 183 HRERATRSAIMIGSETMITDQPMLTVRHINISHKQPLRVVIDRRGRLQNTNFDFSNNWLI 242
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
V K + + LK +L L + + S++VEGG ++ HSF+
Sbjct: 243 YTENV-----------LFSKQHSYVKLMSGALKDILIDLAKQNIQSVMVEGGPSLIHSFL 291
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L +++Y + V+ + + + + G+ V YI
Sbjct: 292 KENLWQEMLIYTTDKVLSKDSLK------GISVSQKPKNEVQVGNAVKKVYIN 338
>gi|184155252|ref|YP_001843592.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
gi|183226596|dbj|BAG27112.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956]
Length = 352
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 106/356 (29%), Positives = 153/356 (42%), Gaps = 7/356 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63
S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + +
Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G
Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V+ ++ + + Y ++R IT K A+S D + A + IT ++
Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA AI+VG GTVLADDP L C L + + D + A
Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQLFPPVRVILDRAGRLLDYQDRFVFTDASA 241
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ T ++ + D +LL + SL VEGG AV
Sbjct: 242 PTWLVTTNRA---ATKVDWPAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTEL 298
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ V+ +I Y +IG+ G+ F G D+ ++
Sbjct: 299 FQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTA--FTHRTVTQLGDDIRIDERNDE 352
>gi|239905200|ref|YP_002951939.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Desulfovibrio magneticus RS-1]
gi|239795064|dbj|BAH74053.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Desulfovibrio magneticus RS-1]
Length = 381
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 97/373 (26%), Positives = 163/373 (43%), Gaps = 22/373 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L EA
Sbjct: 4 DNDAVFMARALELAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLREAE 63
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G + GAT YVTLEPC+H+G++PPC++ ++E G+ RVV+ DP+ G
Sbjct: 64 ERGIDPAGATMYVTLEPCNHFGKTPPCSRTVLEAGVSRVVIGCLDPNPVAGGGAETLRQG 123
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ ++ E + + ++ + R ++TLK+A++ D I S ++G S+
Sbjct: 124 GVAVDVGILGQECRDAVADFVVYKTMGRPYVTLKLAMTLDGRIAARTGDSAWVSGPESRR 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKII 237
+VH +RA S A++VG GT ADDP LT R P+ +++ D++
Sbjct: 184 RVHRMRAASQAVMVGGGTFRADDPRLTHRLEVVDPLSGNPQPLAVVVTRSL-PPADARFA 242
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK---------LLTILVGRGVT 288
+P ++ ++ A A + L+ L + V
Sbjct: 243 LVRERSPSLVFLTSEAEARAAAGLALAKRGVRVYGLPLRDEGELDLLPGLTRLRDEARVF 302
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP----LEEGYLEKNFMCVRR 343
LL EGG +A + L D + L+ + V+ + +P + F
Sbjct: 303 RLLCEGGGGLAGQLVAQGLADELALFYAPKVLADAEAVPGFSGRIIPRMADAAGFRFCGL 362
Query: 344 DYFGSDVCLEYIG 356
G D+ +
Sbjct: 363 RQVGEDILVTARP 375
>gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
Ellin428]
gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus
Ellin428]
Length = 344
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 159/354 (44%), Gaps = 29/354 (8%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM AAL +R +G TS NP+V +IV+ G +I RG G PHAE++AL +
Sbjct: 2 QDEEFMRAALAEARRGLGQTSPNPAVGAVIVRAGKIIARGYHHRAGLPHAEIEALRALPK 61
Query: 66 E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
ARGAT YVTLEPCS +GR+PPC + II G RRVV+ DP+ +GRG++ L G
Sbjct: 62 PALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDTG 121
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + A+ V K + K +S D I +T +++
Sbjct: 122 IAVTTDVLEAECRALNAAFNHWIVTKMPLVIAKAGMSLDGRITRPPGEGQWLTNAVARKD 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR+Q DAIL+G T+ D+P LT R P RI++ KL ++ +
Sbjct: 182 AHRLRSQVDAILIGAETLRQDNPRLTVR-GVRGARQPWRIVITRSGKLPKEAHLFTDEHR 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ E +L L R +TS+++EGG V
Sbjct: 241 ERTLVYREKSLRT----------------------VLRDLGKRQITSVMIEGGGGVLGEA 278
Query: 303 INSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ RLV Y + ++ G + + G ++CL
Sbjct: 279 FDRRLVQRAHFYLAPLLCGGPAVVVKGLGVGSNAEAATIRNATYTRLGDNLCLT 332
>gi|56696631|ref|YP_166992.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
gi|56678368|gb|AAV95034.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3]
Length = 364
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 131/367 (35%), Positives = 197/367 (53%), Gaps = 13/367 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +S DAR+M+ AL R G+ NP+V C+IV +G ++GRG T GG PHAEV AL
Sbjct: 1 MSMS--DARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVAL 58
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++D D RV+G G + L
Sbjct: 59 AQAGGAARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLR 118
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + + A + E R +TLK+A S D I A S ITG +
Sbjct: 119 RAGIEVSVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEA 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RA+ DA+LVG GT +DDP LT R G P+R+++ + L L S++ +T
Sbjct: 179 RRAVHAMRARHDAVLVGAGTARSDDPSLTVRDMG-VAQQPVRVVVSRYLDLPLMSQLART 237
Query: 240 ALLAPVIIVTENDDPVLALAFR-----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A PV + + + + LL L G+G+T + EG
Sbjct: 238 ARQVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATDLLRQLGGQGLTRVFCEG 297
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350
GA++A S + + +VD ++ + + + IG G+P+ LE+ F + G+D+
Sbjct: 298 GASLAASLLAADMVDELVGFTAGLAIGAEGLPAVGVLGLEQLSEAARFDLIETRAIGADI 357
Query: 351 CLEYIGK 357
+ +
Sbjct: 358 LHRWQRQ 364
>gi|295424908|ref|ZP_06817620.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
DSM 11664]
gi|295065347|gb|EFG56243.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus
DSM 11664]
Length = 347
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 162/351 (46%), Gaps = 6/351 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EEARG 69
M AL+ + T NP V +IVKD V+ G + G HAE A+ + E+
Sbjct: 1 MQLALQEACKGRHQTWKNPLVGAVIVKDNHVLATGYHHHFGERHAERDAISKLTPEQLFN 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+T YVTLEPC+H+G+ PPC+Q I+ I+RVV+ DP V+G+G+ L + GI V
Sbjct: 61 STLYVTLEPCNHFGKQPPCSQLIVNKHIKRVVIAQIDPHKLVTGKGIAALKENGIQVATG 120
Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ +E + Y + IT+K A+S D+ + + IT + +VH RA
Sbjct: 121 ILANEARKLNEHYTYFYETNQPWITVKQAISLDHKVAVRTNQRTKITNDLVYQKVHSERA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
AI++G T + D+P L ++ + + LD K+ I
Sbjct: 181 DYQAIVIGSSTAIIDNPSLLTNVHTDYSPIRIVLDRRGRLLKHLDLKLFTDQKAQTWIFT 240
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
F K ++ + + ++ L + + S+ VEGG + SF+++ LV
Sbjct: 241 ENKSLSSH--PFNNKFVHCFFSKNDSIGAMINELKNQELQSIYVEGGPTLEKSFLDNYLV 298
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ +I Y + ++G G+ + + +F V+ D ++V ++ +N+
Sbjct: 299 NELITYIAPDLLGANGVSAVSPSSF--HHFSDVKIDKLNNNVRIDERKQNV 347
>gi|227364534|ref|ZP_03848595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus reuteri MM2-3]
gi|325682351|ref|ZP_08161868.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
gi|227070371|gb|EEI08733.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus reuteri MM2-3]
gi|324978190|gb|EGC15140.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A]
Length = 355
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 8/348 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GE 65
DA FM A+ + T NP V ++VK+G V+ RG T G HAE A+ + +
Sbjct: 6 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 65
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ II
Sbjct: 66 QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 125
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E Y +R +TLK AVS D + IT VH
Sbjct: 126 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 185
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R IL+G T + D+P L + + K + ++
Sbjct: 186 TERGNFQGILIGSQTAIIDNPTLLTTSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQAPT 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + + L +L + + S+ VEGG V +F+
Sbjct: 246 WIFTENSSLQDQFAKSIQVFYRRTWSINDILHELGR----QEIQSVYVEGGPTVHQAFLR 301
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
L + +I Y + ++GE G+P L + +++ +
Sbjct: 302 KGLFEELITYLAPQMLGEKGVPGMESPHQL--HLAHQEIKVLENNIRI 347
>gi|148544108|ref|YP_001271478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus reuteri DSM 20016]
gi|184153479|ref|YP_001841820.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
gi|148531142|gb|ABQ83141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Lactobacillus reuteri DSM 20016]
gi|183224823|dbj|BAG25340.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112]
Length = 352
Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 8/348 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GE 65
DA FM A+ + T NP V ++VK+G V+ RG T G HAE A+ + +
Sbjct: 3 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ II
Sbjct: 63 QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 122
Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E Y +R +TLK AVS D + IT VH
Sbjct: 123 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R IL+G T + D+P L + + K + ++
Sbjct: 183 TERGNFQGILIGSQTAIIDNPTLLTTSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQAPT 242
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + + L +L + + S+ VEGG V +F+
Sbjct: 243 WIFTENSSLQDQFAKSIQVFYRRTWSINDILHELGR----QEIQSVYVEGGPTVHQAFLR 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
L + +I Y + ++GE G+P L + +++ +
Sbjct: 299 KGLFEELITYLAPQMLGEKGVPGMESPHQL--HLAHQEIKVLENNIRI 344
>gi|222528581|ref|YP_002572463.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
DSM 6725]
gi|222455428|gb|ACM59690.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii
DSM 6725]
Length = 371
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 106/361 (29%), Positives = 159/361 (44%), Gaps = 15/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A
Sbjct: 6 HSYYMNMALELAKKASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + AT YVTLEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q G
Sbjct: 66 GYLLKNATMYVTLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHG 125
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + + E + + +I +K+A S D I
Sbjct: 126 IEVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTEEENVF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + AILV + TV++D+P L R G P R++LD ++ L+ I+KTA
Sbjct: 186 VHSLRQKYMAILVSVNTVISDNPILNAR-YGQIVRQPTRVVLDSKLRIPLECNIVKTADK 244
Query: 243 APVIIVTENDDPV-------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
IV + + DL + L + + S+LVEGG
Sbjct: 245 YSTYIVCSENVNDIQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCL 352
+ + + R+ D + IG + E + F + +
Sbjct: 305 SLLNFFLLKQRIADYWYSLIFNVFIGGQDTKGVVGAEGFEDFFPKLANTKVTTFKNSTII 364
Query: 353 E 353
E
Sbjct: 365 E 365
>gi|110679096|ref|YP_682103.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
114]
gi|109455212|gb|ABG31417.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh
114]
Length = 365
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 126/358 (35%), Positives = 179/358 (50%), Gaps = 11/358 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
R+M+ AL R G NP+V C+IVKDG +IGRG T GG PHAE QAL +A +AR
Sbjct: 6 RYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQAR 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GA YVTLEPC+H+G++PPCA+ ++ G+ RV DPD RV G G + L Q GI V
Sbjct: 66 GADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E++ + + R R +TLK+A S D I S ITG ++ VH LR
Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRVVHALR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A+ DA++VG GT DDP LT R + P R+++ + L + +TA PVI+
Sbjct: 186 ARHDAVMVGAGTARKDDPALTVR-DLGTAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244
Query: 248 VTENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
D + + D ++ L G G+T + EGG+A+A S
Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD +I + + + IG G+PS L + + G DV +
Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWER 362
>gi|218296564|ref|ZP_03497292.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
gi|218243106|gb|EED09638.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23]
Length = 377
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 103/377 (27%), Positives = 167/377 (44%), Gaps = 23/377 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D RF+ AL+ + G T NP V ++V+DG ++G G G PHAE ALE
Sbjct: 1 MRDLDERFLRRALQIAERARGHTHPNPLVGAVVVRDGEIVGEGYHPRAGAPHAEALALEA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGAT YV+LEPC H+GR+PPC+ +I G+ RVV+ DP+ ++ G+ L
Sbjct: 61 AGERARGATVYVSLEPCDHHGRTPPCSLALIRAGVARVVLAARDPNP-LAQGGMARLLAA 119
Query: 123 GIIVDRMMESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + E + R + LK A++ D + + ++ S+
Sbjct: 120 GVAVEAGLLEEEAQDQNEAFFTALRRGRPFVLLKAALTLDGRVATRLGDARYVSSEASRR 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLS 231
H R A++VG+GTVL DDP LT R + P++++LD +
Sbjct: 180 VAHAYRQWLPAVMVGVGTVLQDDPALTVREPDFRPFPLMLEPPPLRDPLKVVLDTEARTP 239
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR------ 285
+++ + V K ++ + R
Sbjct: 240 PTARLFRPGPRGERARVLILAGEGAPKERLKALEAAGARVEELPREGGRVSPERALALLR 299
Query: 286 --GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMC 340
G+ +L+EGG +A +F+ LVD + L+ + ++GEG +E
Sbjct: 300 AEGIDGVLLEGGPGLAGAFLARGLVDKLALFLAPKLLGEGRGLLEGFGVERMAEALRLRL 359
Query: 341 VRRDYFGSDVCLEYIGK 357
RR++ G D+ LE +
Sbjct: 360 HRREWLGDDLWLEAYLE 376
>gi|312877999|ref|ZP_07737939.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
lactoaceticus 6A]
gi|311795234|gb|EFR11623.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
lactoaceticus 6A]
Length = 371
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 103/367 (28%), Positives = 163/367 (44%), Gaps = 16/367 (4%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+
Sbjct: 1 MRFLS-HSYYMNMALDLAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAI 59
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
E+A G + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q
Sbjct: 60 EDAIKNGYLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQ 119
Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L Q GI V + + E + + + + +K+A S D I +
Sbjct: 120 ILKQHGIEVVEGVLQKEAESINKDFFKYIKKGIPYTAIKVAQSIDGKIAKPSNKRFLFST 179
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
VH LR + A LV + TV++D+P L R P+R++LD ++ L+ I
Sbjct: 180 EEENVFVHSLRQKYMATLVSVNTVISDNPILNARYGE-IVRQPIRVVLDTKLRIPLECNI 238
Query: 237 IKTALLAPVIIVTENDDPVL-------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+KT+ IV + + DL + L + + S
Sbjct: 239 VKTSDEYSTYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVS 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYF 346
+LVEGG+ + S + R+ D + IG + E + + F
Sbjct: 299 VLVEGGSLLNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKLVNTKVTTF 358
Query: 347 GSDVCLE 353
+ +E
Sbjct: 359 KNSTIIE 365
>gi|288904903|ref|YP_003430125.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
gi|288731629|emb|CBI13184.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34]
Length = 351
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 107/352 (30%), Positives = 157/352 (44%), Gaps = 12/352 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63
+M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA
Sbjct: 1 MHENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEA 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +G
Sbjct: 61 PEELTNSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + Y KR ++ LK AVS D I +T +
Sbjct: 121 IEVVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKI-AVLGKRTALTDDETNRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AILVG TVL D+P+L L + + +
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPQLLGAGTTLYPPVRVI------LDEIGRIFDKRELQI 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ +I +I + +L L + + S+ VEGGA V +F
Sbjct: 234 FKNQSAPVYIFSRRQVTNLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCL 352
+ S L D +I Y + VIG G + +E+ + G+++ L
Sbjct: 294 LASDLWDELISYMTPKVIGGNGRAAIASSRQVEQVYDLQDFSVQTIGTNLRL 345
>gi|15644572|ref|NP_229625.1| riboflavin-specific deaminase [Thermotoga maritima MSB8]
gi|148270243|ref|YP_001244703.1| riboflavin biosynthesis protein RibD [Thermotoga petrophila RKU-1]
gi|281412422|ref|YP_003346501.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
RKU-10]
gi|4982410|gb|AAD36891.1|AE001819_14 riboflavin-specific deaminase [Thermotoga maritima MSB8]
gi|147735787|gb|ABQ47127.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Thermotoga petrophila RKU-1]
gi|281373525|gb|ADA67087.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila
RKU-10]
Length = 348
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 170/361 (47%), Gaps = 20/361 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G
Sbjct: 3 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ ++ +
Sbjct: 63 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIE 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+++ ++E E K ++T +KR + LK A + D I S IT + +VH
Sbjct: 123 VIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITD-KLRFKVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R A+LVG GTVL D+P+LTCRL +P+R+ILD LS +
Sbjct: 182 EMRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFEENARV 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + ++ +L L R + S+LVEGG+ V F++
Sbjct: 240 IVFTESEEAE-------YPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLD 292
Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
D + + S + G+G L + + F V ++ S+ +E C +
Sbjct: 293 H--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP---CSR 347
Query: 363 E 363
E
Sbjct: 348 E 348
>gi|254474397|ref|ZP_05087783.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
gi|214028640|gb|EEB69475.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11]
Length = 358
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 130/356 (36%), Positives = 185/356 (51%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
MS AL R G NP+V C+IVKDG ++GRG T GG PHAE +AL AG ARGA
Sbjct: 1 MSLALSLGRRGQGQCWPNPAVGCVIVKDGRIVGRGWTQPGGRPHAEPEALARAGALARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYV+LEPC+H+G++PPCAQ +I+ G++RVV ++D D RVSG G L GI V +
Sbjct: 61 TAYVSLEPCAHFGKTPPCAQALIDAGVKRVVAAIEDSDPRVSGHGFAMLRDAGIEVTTGI 120
Query: 131 ESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ HA + + R +TLK+A S D I A S ITG ++ VH +RA+
Sbjct: 121 CADEAARDHAGFFLKTEQGRPFVTLKLANSFDGRIATATGESKWITGPDARRAVHAMRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG GT ADDP LT R G P+R+++ H L L ++ +TA P+ I
Sbjct: 181 HDAVMVGGGTARADDPSLTVRDMG-ISRQPVRVVISRHLDLPLMGQLARTAKDVPLWICH 239
Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ L + + +L L G+T + EGG+ +A S +
Sbjct: 240 GSGADADRLRAWEGVGATLIHCASDGLQLEAADVLQQLGQAGLTRVFCEGGSGLAASLLK 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD +I + + +VIG GG+ S E F + + G D+ +
Sbjct: 300 QDLVDELIGFTAGVVIGGGGLSSIGSLGHEALADAPRFDLIEQTQIGPDLLHRWAR 355
>gi|301336274|ref|ZP_07224476.1| riboflavin-specific deaminase [Chlamydia muridarum MopnTet14]
Length = 368
Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats.
Identities = 107/363 (29%), Positives = 171/363 (47%), Gaps = 8/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGERGRLFAPPNPWVGCVIVKNGCVIGEGWHKGIGFPHAEVCAIQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L +
Sbjct: 64 SPCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVALLDPDPRVCKKGIARLREA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D S I+G +++
Sbjct: 124 GIPVYVGIGSKEAQASLQPYLHQRETGLPWVVMKTAASLDGQTADREGRSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S A++VG TV D+P L+ R L E P+R+++D K+ LD+++ +
Sbjct: 184 DVGKLRAESQAVIVGSRTVCLDNPRLSARQALGNLYERQPLRVVIDSLGKVPLDARVWNS 243
Query: 240 ALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
++ TE + + L + DL++LL L +G +L+EGGA
Sbjct: 244 DSGKSLLATTEQCSLEYMQRLEDLGVEVWQSSSQQVDLRELLQTLAAKGCLQVLIEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEY 354
+ +F LV++ ++Y +G+ G P + K+ G V + +
Sbjct: 304 LHSAFWKEHLVNAGVIYWGPKFLGDQGSPMLQDLQVCLANAKSVKITEISLVGDSVKVCF 363
Query: 355 IGK 357
+
Sbjct: 364 ERE 366
>gi|298291639|ref|YP_003693578.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
gi|296928150|gb|ADH88959.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506]
Length = 370
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 140/370 (37%), Positives = 205/370 (55%), Gaps = 13/370 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56
M + D M+AAL R +G T NP+V L+V++ +V+GRG T+ GG PHAE
Sbjct: 1 MTKTIHDEALMAAALSVGRRELGHTWPNPAVGALVVRETGGAPVVLGRGWTSKGGRPHAE 60
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
QAL +AGE ARGAT YVTLEPCSH+G +PPC + G+ RVV ++DPD RV+GRG
Sbjct: 61 PQALAQAGEGARGATLYVTLEPCSHHGLTPPCVDAVRASGVARVVAAIEDPDFRVAGRGF 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPIT 175
L + GI V+ + + HA R+V + R H+ LK+AVS D +G+AG IT
Sbjct: 121 SLLREAGIDVEVGVGAPEARLAHAGHIRRVTEGRPHVMLKLAVSADGKVGLAGRRPAAIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G +++ +VHL+R+ DA+L GIGTVLADDP LTCRL G+++ SP+RI+LD +L S
Sbjct: 181 GEVARGRVHLMRSIYDAVLTGIGTVLADDPLLTCRLPGMEDRSPLRIVLDADLRLPSTSA 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ ++ AP+ I+ D PV + DL + L +L RG+T
Sbjct: 241 LARSLGTAPLWIIAAEDAPVAPEEMLVAMGVEVMRVRRRPDGGIDLNEALKLLALRGITR 300
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFG 347
L+VE G V+ + + LVD ++ + + +GEG + + + ++ G
Sbjct: 301 LMVEAGPRVSTAVLREGLVDEANIFLAPVQLGEGALDALEGLPLSALDDYLSDAELEWHG 360
Query: 348 SDVCLEYIGK 357
D +
Sbjct: 361 EDRLRIMRRR 370
>gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
5692]
gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM
5692]
Length = 384
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 17/364 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67
M A+ G T+ NP V +I ++G V+ G G PHAEV+A+ AG +
Sbjct: 1 MQHAVELGETGFGRTAPNPCVGAVITRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
T +VTLEPC+H+GR+PPC + IIE GIR V + DP+ V G G +L +G+ V+
Sbjct: 61 SECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEVE 120
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E + + +L Q EKR + LK+A + D I S ++G ++ +VH L
Sbjct: 121 VGILEPACRDLIADFLLWQQEKRPGVLLKLAATLDGKIATRSGHSAWVSGPEAREEVHGL 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + D +LVG GT+ AD+P LTCR P+ +++ + D + I
Sbjct: 181 RGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALVVTSRLPEAQDDLHLLRHRPQETI 240
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRGV-TSLLVEGGAAV 298
T +D A + + D DL+ LT +G+ ++L EGG +
Sbjct: 241 FWTTDDQSRTPQADALRALGCRIWDLPLTASGMLDLRAGLTHFFDQGLGHTILCEGGGRL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLE 353
A + L D + LY + ++G+ + + R G+D+CLE
Sbjct: 301 ALALAEQGLADRLRLYLAPKILGDATAINLFSGRDELDMGQALPWRFTRSRQVGADMCLE 360
Query: 354 YIGK 357
+
Sbjct: 361 LRPQ 364
>gi|227499806|ref|ZP_03929901.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
tetradius ATCC 35098]
gi|227218110|gb|EEI83378.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus
tetradius ATCC 35098]
Length = 357
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 111/349 (31%), Positives = 161/349 (46%), Gaps = 12/349 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M +R G TNP V ++ KDG VIGRG HAE+ + A GA
Sbjct: 7 MRECFSLARKGRGKVLTNPMVGAIVYKDGEVIGRGYHKSFYDDHAEIDCFKNLKGSAEGA 66
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T V LEPCSH+G+ PPC +I I+RVV+ D + +V G+ L GI V +
Sbjct: 67 TLIVNLEPCSHFGKHPPCVDEVIRRKIKRVVISNIDTNPKVD--GISKLKACGIEVISGV 124
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E EGK + KR + LK A S D I S I+ S+ VH LR
Sbjct: 125 LEEEGKKLNEKFFFNMSHKRPLVALKYAQSLDGKIATGKFDSKWISNEKSREFVHQLRND 184
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI+VG T+L D+P LT R++ P+RII+ L+ D ++ K I +
Sbjct: 185 YDAIIVGKNTLLTDNPRLTSRIDK--GIDPVRIIVSDSLDLNPDLEVFKENSDGKTYIAS 242
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+D + + + + DL+ LL L + + S+LVEGG+ + +SF+ L+D
Sbjct: 243 SSDKDIKLDSGLIRCKSKNGH--IDLEDLLKKLYEKNIGSVLVEGGSVLNNSFLEEDLID 300
Query: 310 SIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353
I + + I++ G + + +G K F FG DV E
Sbjct: 301 KIYQFMAPIIVSGFYSRSAFIGKGVGYIKDAKRFRIDDIKRFGEDVMFE 349
>gi|312869208|ref|ZP_07729380.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
PB013-T2-3]
gi|311095229|gb|EFQ53501.1| riboflavin biosynthesis protein RibD [Lactobacillus oris
PB013-T2-3]
Length = 352
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 101/356 (28%), Positives = 158/356 (44%), Gaps = 9/356 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65
D M A+ ++ T NP V ++VK+G V+ G T G PHAE AL + A
Sbjct: 3 DEDLMGLAVAAAKQAGVATWRNPGVGAVVVKNGHVLATGHTQPYGGPHAERDALSQLAPG 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
+A GAT YVTLEPC+HYG+ PPC Q II+ GI+RVV+ DP V+G+G+ L G
Sbjct: 63 QAAGATLYVTLEPCNHYGKQPPCTQLIIDSGIQRVVIAQLDPHALVTGKGVAALRHHGIE 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V + + Y R +TLK AVS D I IT +VH
Sbjct: 123 VVTGIGTQQAAQVNPHYNFFYRHHRPWVTLKQAVSLDGRISAGPGQRTAITNQAVYQRVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA I++G T + DDP L + + D ++ + L
Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTLVPTPQLTHLPIRVVLDRRGRLADYPDRQLFRDGLAPT 242
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ P + + ++ +L GV SL VEGG + ++F
Sbjct: 243 WVFTERKSLPDRLGP----RAWVFVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNAFAR 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-EYIGKNL 359
+ LV+ ++ Y S +++G+ G+P + F + + G++V + E +++
Sbjct: 299 AGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRIAERERQDV 352
>gi|294083733|ref|YP_003550490.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663305|gb|ADE38406.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 366
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 141/362 (38%), Positives = 190/362 (52%), Gaps = 18/362 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ +R VG + NP V C+I+ G +IG G TA G PHAE AL AG+ A G
Sbjct: 1 MRYAISEARKAVGRAAENPPVGCVIIAASGQLIGAGHTARTGRPHAETVALAMAGQRAHG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC+H+G++PPCA +IE GIRRVV+ DPD RV+G+G+ L GI V
Sbjct: 61 GTAYVTLEPCAHHGQTPPCATALIEAGIRRVVIACQDPDRRVNGKGVTMLRAAGIDVITD 120
Query: 130 MESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ S+ + R V KR +T+K A S D I + V +T + VH+LR+
Sbjct: 121 IGSDMAYSVMQGFLHRMVHKRPLVTIKTATSLDGGIALGDGRKVWLTSPPMRRYVHVLRS 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+SDAIL GIGT+LADDPE+TCRL GL+ SP R ILD + +KI++ P +I
Sbjct: 181 KSDAILTGIGTILADDPEMTCRLPGLEHDSPSRFILDSQLRCPPGAKILQNNNAVPTVIF 240
Query: 249 T------------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
E V+ K + DL+K+L L GV +LLVE G+
Sbjct: 241 CAETASPDARIALEKSGAVIVPMAVDKAQDDGLQKRLDLQKILRYLGDAGVNNLLVEAGS 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352
++ S I LVD I +SQ ++G IP SPL+ L + + G D
Sbjct: 301 SIVTSIIADDLVDVIHWTQSQHLLGSDAIPAISPLKLVALPEQTRYTETHHQQIGRDRLT 360
Query: 353 EY 354
Sbjct: 361 IL 362
>gi|260665250|ref|ZP_05866099.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
SJ-7A-US]
gi|313472797|ref|ZP_07813285.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
gi|260560987|gb|EEX26962.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
SJ-7A-US]
gi|313448878|gb|EEQ68026.2| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153]
Length = 352
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 13/354 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D FM AL + T TNP V ++VKD V+ G G HAE A+ +
Sbjct: 1 MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 60
Query: 63 A-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L
Sbjct: 61 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 120
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V + E K Y+ ++TLK A+S D+ + ITG +
Sbjct: 121 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNK-RIQITGNAAS 179
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH RA AI+VG T L D+P L + P+R+++D +L + +
Sbjct: 180 QRVHQERADYQAIMVGSSTALIDNPTLLTSIKQDHP--PIRLVIDRRGRLLNQQLTLFSD 237
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
AP I T+ +P LA ++ + D L ++L IL V S+ VEGG A+
Sbjct: 238 NRAPTWIFTQ--NPELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 295
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCL 352
SF+ +L +I Y S +G L+ + +N + D+ +
Sbjct: 296 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 345
>gi|238855788|ref|ZP_04646080.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
gi|282934748|ref|ZP_06339990.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
gi|238831564|gb|EEQ23909.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3]
gi|281301189|gb|EFA93491.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
Length = 359
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 13/354 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D FM AL + T TNP V ++VKD V+ G G HAE A+ +
Sbjct: 8 MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 67
Query: 63 A-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L
Sbjct: 68 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 127
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V + E K Y+ ++TLK A+S D+ + ITG +
Sbjct: 128 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNK-RIQITGNAAS 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH RA AI+VG T L D+P L + P+R+++D +L + +
Sbjct: 187 QRVHQERADYQAIMVGSSTALIDNPTLLTSIKQDHP--PIRLVIDRRGRLLNQQLTLFSD 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
AP I T+ +P LA ++ + D L ++L IL V S+ VEGG A+
Sbjct: 245 NRAPTWIFTQ--NPELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 302
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCL 352
SF+ +L +I Y S +G L+ + +N + D+ +
Sbjct: 303 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 352
>gi|295692792|ref|YP_003601402.1| riboflavin biosynthesis protein ribd [Lactobacillus crispatus ST1]
gi|295030898|emb|CBL50377.1| Riboflavin biosynthesis protein ribD [Lactobacillus crispatus ST1]
Length = 352
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 158/350 (45%), Gaps = 8/350 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+ +
Sbjct: 2 EKDTFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLT 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L + G
Sbjct: 62 PEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAQLQKNG 121
Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + ++ Y IT+K A S DN + M PIT Q
Sbjct: 122 IQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQAVYQQ 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA AI++G T + DDP L + + I L +++
Sbjct: 181 VHSERADYQAIMIGSSTAIIDDPILRTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDTNP 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + F I II+ ++++ L + + S+ VEGG + +
Sbjct: 241 TWIFTQNKQMSK---NNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAI 297
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+N V+ +I Y + I +G+ G+ + + V++ FG++ +
Sbjct: 298 MNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNNERI 345
>gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
Length = 365
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 117/348 (33%), Positives = 172/348 (49%), Gaps = 7/348 (2%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
L+ + + TS NP V C+IV+DG +G G A G HAEV AL +AG ARGATAYV
Sbjct: 15 LQLAARGLDTTSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAAARGATAYV 74
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
TLEPCSH+GR+PPCA +IE G+ RV+ ++DP+ V+GRGL L GI + +E
Sbjct: 75 TLEPCSHFGRTPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLLAEA 134
Query: 135 KIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
L+ +++R R + LK+A + D + S ITG ++ H RA++ AI
Sbjct: 135 AQELNIGFVSRMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARACAI 194
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIVTEND 252
L GIGTV DDP+L R E P+RI++D ++S ++I +L +
Sbjct: 195 LTGIGTVREDDPQLGVRDVP-CERQPLRILVDARLEVSPQARILQGEPILIATGSTDQAR 253
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+L A + DL LL +L RG+ L VE G + S + VD ++
Sbjct: 254 IDMLRAAGHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVDELL 313
Query: 313 LYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+Y + +++G+ L G D+ L
Sbjct: 314 IYLAPMLVGDAAQGLFNLPALTRLEGATRLDIRDLRRIGPDLRLIARP 361
>gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica
W22703]
Length = 337
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 109/336 (32%), Positives = 157/336 (46%), Gaps = 16/336 (4%)
Query: 37 KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
+DG ++G G G PHAEV AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G
Sbjct: 2 RDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALLTAG 61
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLK 155
++RVV + DP+ +V+GRGL L Q G+ VD + ++ +L R ++ LK
Sbjct: 62 VKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPYLQLK 121
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+A S D MA S IT ++ V RAQS AIL TVLADDP LT R L
Sbjct: 122 MAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRWQELD 181
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-- 273
+ + + + + + P V + D P + +
Sbjct: 182 AQTQA-LYPQDALRQPVRIIVDSHNRVTPQHKVIQQDGPCWLARVETDEQSWPNNVEQLL 240
Query: 274 --------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
DL L+ L R + S+ VE G A + + + +VD +ILY + ++G
Sbjct: 241 LPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAPKLLGSDAR 300
Query: 326 ----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ L + F+ G D+ L K
Sbjct: 301 GLCQLTGLTQLSDAPEFVFSEVRQVGPDLRLRLQPK 336
>gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae
EF01-2]
gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Verminephrobacter eiseniae EF01-2]
Length = 371
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 116/361 (32%), Positives = 168/361 (46%), Gaps = 13/361 (3%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
AL + + TS NP V C+I G+VIGRG T G HAE+ AL A G R
Sbjct: 11 EALDLAHQGLYRTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVR 70
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATAYVTLEPCSH+GR+ PC ++ GI +VV + DP+ V+G+G L G+ V
Sbjct: 71 GATAYVTLEPCSHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQV 130
Query: 129 MMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
++ L+ ++ R + +K+A S D + +A S ITG ++ H R
Sbjct: 131 GPGAQAARELNVGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWR 190
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A++ A+L GIGTVLADDP L R E P ++LD ++ LD+ I +
Sbjct: 191 ARACALLTGIGTVLADDPRLDVRA-LHTERQPALVLLDSALRVPLDACIFAADRAVHLYA 249
Query: 248 VTENDDPVLALAFRKKN--INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
END AL R + DL +L L R V L VE G + + +
Sbjct: 250 AAENDAKRRALEQRGATLAVLPDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQ 309
Query: 306 RLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL--EYIGKNLC 360
LVD +++Y + +IG +PL + + G DV + + +
Sbjct: 310 GLVDELLVYLAPKLIGPGLGMAQLAPLAALSQAQALDFHGLERVGEDVRILARWRDREPF 369
Query: 361 L 361
Sbjct: 370 W 370
>gi|15888505|ref|NP_354186.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
tumefaciens str. C58]
gi|15156207|gb|AAK86971.1| bifunctional riboflavin deaminase-reductase [Agrobacterium
tumefaciens str. C58]
Length = 414
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 171/413 (41%), Positives = 222/413 (53%), Gaps = 56/413 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +FM+ A+ S H G T TNPSV C++VKDG +I VTA GG PHAE QAL
Sbjct: 1 MTSRADDEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E AGE ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L
Sbjct: 61 EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILR 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI+V+ + EGK L YLTRQ++KR H+ LK+AVS D MIG G G V ITG S
Sbjct: 121 DAGIVVETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAES 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH LRA+ D ILVGI T +ADDPELT R+ G++ SP+RI+LD F+L L SK++++
Sbjct: 181 RRVVHELRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRS 240
Query: 240 ALLAPVIIV----------------------------------------------TENDD 253
A PVI+ +
Sbjct: 241 AREVPVIVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEG 300
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE---------GGAAVAHSFIN 304
+ A ++L + +L E GGA A SF+
Sbjct: 301 EMPGRAEGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLE 360
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ LVD I+L+ S +VIGEGGI +PL + ++ V +G D C +Y
Sbjct: 361 AGLVDRIMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDYERP 413
>gi|256851712|ref|ZP_05557100.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
27-2-CHN]
gi|260661570|ref|ZP_05862482.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
115-3-CHN]
gi|256615670|gb|EEU20859.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
27-2-CHN]
gi|260547627|gb|EEX23605.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
115-3-CHN]
Length = 352
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 141/352 (40%), Gaps = 9/352 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + D +FM+ A+ + T TNP V ++VKDG V+ G G HAE A+ +
Sbjct: 1 MMNKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISK 60
Query: 63 A-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L
Sbjct: 61 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRS 120
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
I V + E K Y K +I LK A+S D+ +
Sbjct: 121 HNISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQITGK-AAY 179
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
QVH RA AI++G T L D+P L + + + +
Sbjct: 180 EQVHRERADYQAIMIGSSTALIDNPTLLTSVKQDHPPIRIVLDRRGRLLNKNLALFSDKH 239
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ K + L+++L +L V S+ VEGG +
Sbjct: 240 AQTWLFTQNTKLTKFPYPPHIKVFLLH----SGSLREVLQLLTQNNVQSIYVEGGPTLMK 295
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+FI +L +I Y S +G + E N + D+ +
Sbjct: 296 TFIEEKLAQELITYFSPTFLGNNALDGF--EITENINLIKPDYQVLDKDIRI 345
>gi|189464287|ref|ZP_03013072.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
17393]
gi|189438077|gb|EDV07062.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM
17393]
Length = 345
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 10/324 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65
++M ++ ++ + NP V +IV DG +IG G G HAEV A+ +
Sbjct: 4 EKYMRRCIQLAQNGFCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDTS 63
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E+E + + ++T +R +ITLK A S D I + G P+ +
Sbjct: 124 VTVGVLENECRHLIRRFITFHTLRRPYITLKWAESADGFIDLHRNGGSPVILSTPLTSMM 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + +++ + +GT A+ + + SP+R+++D LS + +
Sbjct: 184 VHKKRAEHAAILVGTRTAELDNPSLNVRNWYGRSPVRLVIDRRLSLSPTLHLFDGNVPTL 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + I L +++ +L R + SLLVEGG+ + SFI+
Sbjct: 244 VF------TEHPHNSLPGVEYLPINFGQDILPQIMQVLYERNLQSLLVEGGSTLLQSFID 297
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP 328
+ L D + S I + G+ +P
Sbjct: 298 ASLWDEAFVEESPIHL-TSGVNAP 320
>gi|271964337|ref|YP_003338533.1| diaminohydroxyphosphoribosylaminopyrimidinedeami nase
[Streptosporangium roseum DSM 43021]
gi|270507512|gb|ACZ85790.1| Diaminohydroxyphosphoribosylaminopyrimidinedeami nase
[Streptosporangium roseum DSM 43021]
Length = 388
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 117/380 (30%), Positives = 164/380 (43%), Gaps = 30/380 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M A+ + G TS NP V C+++ G V+G G AY G PHAEV AL AGE
Sbjct: 3 DQAHMRRAIELAARGRGTTSPNPVVGCVVLDAAGQVVGEGFHAYAGGPHAEVVALRAAGE 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARG TAYVTLEPC H GR+ PCA ++E GI RVVV V DP+ +G + +
Sbjct: 63 RARGGTAYVTLEPCDHTGRTGPCALALLEAGIARVVVAVRDPNPAAAGGADRLTRHGVAV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ E +LT R H+T K A + D A S IT S+ VH
Sbjct: 123 TTGVLAEEAGRGNAEWLTSVRLGRPHVTWKYAATLDGRSAAADGTSQWITSPESRADVHR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--------------------------GLQEHSP 219
LR ++DAI+ GIGTVLADD LT R P
Sbjct: 183 LRGEADAIIAGIGTVLADDARLTVRRPAADGAPAGVDSGLPDGAATARPLAQGAPATRPP 242
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
+R+++D + L ++++ V + + D LA + DL LL
Sbjct: 243 LRVVVDSDARTPLTARVLDGRAPTLVAVADDADADALAAGAEVVRLARRRPYGLDLAGLL 302
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI---GEGGIPSPLEEGYLEK 336
L R + +L+EGG +A SF+ L+D ++ Y + ++ P+
Sbjct: 303 AELHRRQIVGVLLEGGPTLAGSFLKEGLIDRVVGYLAPALLGEGAAALGPAGAATIAETH 362
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
G D+ L
Sbjct: 363 RLEFEDVTPIGPDLRLTARP 382
>gi|149001717|ref|ZP_01826690.1| Holliday junction DNA helicase motor protein [Streptococcus
pneumoniae SP14-BS69]
gi|147760175|gb|EDK67164.1| Holliday junction DNA helicase motor protein [Streptococcus
pneumoniae SP14-BS69]
Length = 341
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 109/344 (31%), Positives = 167/344 (48%), Gaps = 13/344 (3%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89
V +IVKD +IG+G + G PHAE AL+ E GAT YVTLEPC H+G++PPC
Sbjct: 1 MVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGATLYVTLEPCCHFGKTPPCI 60
Query: 90 QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEK 148
II+ GI RVV+ D + VSG+G++ L + + V + E+E + ++ +
Sbjct: 61 DAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGILENECLNLIKSFRKYITQH 120
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
++ +K A+S D I S IT ++ VH LR AI+VG+ TV+ DDP LT
Sbjct: 121 VPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLT 180
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
CRL +P+RII D H + L SKI+KTA I T ++D ++ I+
Sbjct: 181 CRLEE--GKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLYQNHGCEIL 238
Query: 269 YCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ L+ L + SL++EGG+ + S + ++VD + +Y + + G
Sbjct: 239 SIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGGSA 298
Query: 325 IPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
P+ + G+D +E C QE
Sbjct: 299 -KFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPCSQE 341
>gi|119502840|ref|ZP_01624925.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2080]
gi|119461186|gb|EAW42276.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2080]
Length = 359
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 19/357 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R + NP V C+IV D ++G+G T G HAE+ AL A +GA
Sbjct: 1 MEQALAEARKGRFWATPNPHVGCVIVSDNKILGKGFTQPVGGAHAEIMAL-GACASPQGA 59
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
TAYVTLEPC+H GR+ PC + +I GI RVV ++DP+ VSG+G L GI V + +
Sbjct: 60 TAYVTLEPCAHQGRTGPCVEALISAGIGRVVGALEDPNPSVSGKGYDRLRAAGIAVTQGV 119
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ L +L R + LK+A S D MA S ITG +++ V RA
Sbjct: 120 YSEAARVELAGFLLRMERGWGRVRLKLACSLDGRTAMASGESQWITGALARQDVQRQRAA 179
Query: 190 SDAILVGIGTVLADDPELTCRLN----------GLQEHSPMRIILDPHFKLSLDSKIIKT 239
S I+ GIGTVLADD LT R + P R++LD + + +++++ +
Sbjct: 180 SSVIITGIGTVLADDCSLTVRSDELGLRGEELTRALHRPPTRVVLDSNARTPGEARVLSS 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ E P A + DL +L L +G +L+E G ++A
Sbjct: 240 NAPTLVVTANEKQVP----AGALHKTAPVTEAGLDLGDVLESLGSQGANEILIESGPSLA 295
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+F+ + LVD +++Y++ +++G P E GSD+ +
Sbjct: 296 AAFLKADLVDELLIYQAPVLLGSSARPLADLAFSELKDGIQLAYQELSPLGSDLRII 352
>gi|282933540|ref|ZP_06338910.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
gi|297205330|ref|ZP_06922726.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
JV-V16]
gi|281302283|gb|EFA94515.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1]
gi|297149908|gb|EFH30205.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii
JV-V16]
Length = 351
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 140/350 (40%), Gaps = 9/350 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ D +FM+ A+ + T TNP V ++VKDG V+ G G HAE A+ +
Sbjct: 2 NKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKLT 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L
Sbjct: 62 PEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSHN 121
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E K Y K +I LK A+S D+ + Q
Sbjct: 122 ISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQITGK-AAYEQ 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA AI++G T L D+P L + + + +
Sbjct: 181 VHRERADYQAIMIGSSTALIDNPTLLTSVKQDHPPIRIVLDRRGRLLNKNLALFSDKHAQ 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ K + L+++L +L V S+ VEGG + +F
Sbjct: 241 TWLFTQNTKLTKFPYPPHIKVFLLH----SGSLREVLQLLTQNNVQSIYVEGGPTLMKTF 296
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
I +L +I Y S +G + E N + D+ +
Sbjct: 297 IEEKLAQELITYFSPTFLGNNALDGF--EITENINLIKPDYQVLDKDIRI 344
>gi|256421260|ref|YP_003121913.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
2588]
gi|256036168|gb|ACU59712.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM
2588]
Length = 352
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 102/358 (28%), Positives = 158/358 (44%), Gaps = 20/358 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
SSFD +M L+ ++ G + NP V ++V +G +IG G G HAEV +
Sbjct: 3 SSFDEFYMQRCLQLAKLGAGNVAPNPMVGAVLVYEGRIIGEGYHRQYGFAHAEVNCVHSV 62
Query: 64 G----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AT YV+LEPC+HYG++PPCA+ I+ I VV+ D +V+G+G+ L
Sbjct: 63 KPEDQHLIPAATMYVSLEPCAHYGKTPPCAELIVSQQISTVVIGCVDTFSQVAGKGIGIL 122
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + E+ + + T +KR +I LK A + D + A V I+ +
Sbjct: 123 KAAGITVRTGVLEAAARELNSRFFTFHEQKRPYIILKWAQNADGFMAGADGRPVRISNPL 182
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ VH R++ ILVG T +AD+P L R P+RI++D K + +
Sbjct: 183 TDRLVHRWRSEEMGILVGTNTAVADNPRLNNR--LWTGKDPVRIVIDRTLKTPREYHLWH 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
A + I E + + L +L+ IL R + S+LVEGGA V
Sbjct: 241 G--PATLFITAEQAEKQDTAE-----MVTADFSQPLLPQLMKILHDRRILSVLVEGGAHV 293
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D ++++IG+ ++ L SD L Y
Sbjct: 294 LREMTEAGLWDE-----ARVIIGDNPFALGVKAPVLPHAL-LKETQILESDQILFYRN 345
>gi|54307992|ref|YP_129012.1| putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum SS9]
gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum SS9]
Length = 371
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 108/370 (29%), Positives = 170/370 (45%), Gaps = 16/370 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL
Sbjct: 2 FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFALRA 61
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+A+GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L
Sbjct: 62 AGEQAKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + + L+ ++++ ++ LK+A S D ++ S ITG ++
Sbjct: 122 GIEVQTGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230
V RA++ AIL TV+ADDP L R P R+I+D ++
Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRV 241
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ D K+ + + + + +L L+ L + + +
Sbjct: 242 TPDFKLFSLEGETLLARAEMGQETWPDSVTQVLIPKQDDSEQLNLTSLMLELAKQDINHI 301
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
VE GA +A + + LVD +ILY++ ++G L N
Sbjct: 302 WVEAGAELAGGLLAAGLVDELILYQAPKLMGCDSRSLINLKGLTSMSQVLNLEITDVRMI 361
Query: 347 GSDVCLEYIG 356
G D+ +
Sbjct: 362 GPDLRIIARV 371
>gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
and5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. RS9917]
gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase
and5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. RS9917]
Length = 369
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 117/353 (33%), Positives = 168/353 (47%), Gaps = 15/353 (4%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL+ + G TS NP V +++ G ++G G A G PHAEV AL +AGE AR
Sbjct: 9 WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGYHARAGKPHAEVGALVQAGEAAR 68
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H+GR+PPC + +I GIRRVVV + DPD R++G GLQ L G+ V
Sbjct: 69 GGTLVVTLEPCCHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEVIP 128
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E+E A++ R R LK A+S D + S I+G ++ VH LR
Sbjct: 129 GVLEAEAAHQNRAFVHRVKTGRPWGLLKWAMSLDGRTALPNGASQWISGAAARAWVHRLR 188
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A DA++VG GTV ADDP LT R GL+ P+R++L L ++I TA ++
Sbjct: 189 AHCDAVIVGGGTVRADDPLLTSR--GLRTPEPLRVVLSRSLDLPAAARIWTTAEAPTLLA 246
Query: 248 VTE------NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ L A + + LL L RG +L E G A+A +
Sbjct: 247 HGPAVEAADAESSPLLEALGAAGVICTALKRCEPLALLEQLASRGCNRVLWECGPALAAA 306
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSD 349
+ V + + + ++G +PL + + D
Sbjct: 307 ALQQGCVQELAVVIAPKLLGGLAARTPLADLGFTALDQVIPLQDLNLQRLERD 359
>gi|270284895|ref|ZP_06194289.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
gi|270288923|ref|ZP_06195225.1| riboflavin-specific deaminase [Chlamydia muridarum Weiss]
gi|13633863|sp|Q9PLJ6|RIBD_CHLMU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
Length = 371
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 164/361 (45%), Gaps = 9/361 (2%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M VSS FM A+ NP V C+IVK+G +IGRG G PHAEV A
Sbjct: 1 MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
++ GA YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L
Sbjct: 61 FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 120
Query: 120 SQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + E YL ++ + +K A S D S I+G
Sbjct: 121 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKI 236
++ V LRA+S A++VG TV D+P L+ R+ E P+R+++D + LD+++
Sbjct: 181 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 240
Query: 237 IKTALLAPVIIVTENDDPVLALA--FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ TE R + DLK+LL L +G +LVEG
Sbjct: 241 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 300
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVC 351
GA + +F LV++ ++Y +G+ G P + ++ + G V
Sbjct: 301 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 360
Query: 352 L 352
Sbjct: 361 T 361
>gi|88608126|ref|YP_506383.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
Miyayama]
gi|88600295|gb|ABD45763.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str.
Miyayama]
Length = 372
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 109/349 (31%), Positives = 159/349 (45%), Gaps = 10/349 (2%)
Query: 1 MPVSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M S +M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE
Sbjct: 1 MSFSKMHGRIVYYMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEA 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL+ AG +ARGA Y TLEPC+H+GR+ PC IIE GI+ V + DPD RV+G+G+Q
Sbjct: 61 VALKVAGIKARGADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQ 120
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L + GI+V + + + + + LK A + D I S IT
Sbjct: 121 KLQESGIVVTTGILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITS 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+ H+LR S ++++ T+ DDP+L+CRL G+++ S ++ S
Sbjct: 181 PAMRRTAHMLRRMSSSVMISYSTLKHDDPQLSCRLPGVKKESIKVVLDTRG----EISSP 236
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + F N+ L L G+ S+LVE G
Sbjct: 237 NFKIFNDGIVWSFGKRNIFKHKNFFNFEANLNGEMLDLEDVL-QQLGTMGINSVLVECGG 295
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ SFI L D II +RS V G + S ++
Sbjct: 296 KLFSSFITGDLFDQIIWFRSNKVAGGDAL-SCCSNLNFNHPLKFIKLRK 343
>gi|332187003|ref|ZP_08388744.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
gi|332013013|gb|EGI55077.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17]
Length = 313
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 125/354 (35%), Positives = 170/354 (48%), Gaps = 50/354 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AAL + +G T+ NP+V C++V+DG VIGRG T GG PHAE AL EAGE A GA
Sbjct: 1 MGAALALAGRGIGRTAPNPNVGCILVRDGRVIGRGWTQPGGRPHAEAMALAEAGESACGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECG-IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
TAYVTLEPC+H P ++ + +V + DPD R +G+G GI V
Sbjct: 61 TAYVTLEPCAHVSTRGPACTDLLIAAGVAHIVAAMGDPDPRTNGQGFDRARAAGIAVTTG 120
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ESE + + +LTR+ ++R +TLK+A S D I S ITG ++ HL R+
Sbjct: 121 ICESEARAMIAGFLTRRAKERPFVTLKLATSLDGRIARPDGTSRWITGPQARAHTHLERS 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ +AILVG GT+ AD P L RL GL+ SP RI+L P
Sbjct: 181 RHEAILVGRGTLQADSPRLDVRLPGLETRSPRRILLSRT--------------SEPGWET 226
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + LA GV L+VEGGA A +F+ + LV
Sbjct: 227 ISSPHAITHLA--------------------------GVDRLMVEGGAQTASAFLAADLV 260
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLEYIG 356
D ++LYR+ I+IGEG + L + L + G D Y
Sbjct: 261 DRLLLYRAPILIGEG--RAALGDIGLAALADAHGRWRLRDSRMLGIDRMEVYER 312
>gi|282866177|ref|ZP_06275224.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
gi|282558961|gb|EFB64516.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE]
Length = 366
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 108/357 (30%), Positives = 171/357 (47%), Gaps = 4/357 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+++ G G G G PHAE+ AL E
Sbjct: 3 TTADITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALRE 62
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARG TAYVTLEPC+H GR+ PCAQ +++ GIRRVV V DP+ + +G ++
Sbjct: 63 AGERARGGTAYVTLEPCNHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATGGADTLRAEG 122
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ ++ E + A+LT R ++ K A + D + A S IT S+
Sbjct: 123 VQVEQGLLADEAETGNTAWLTSVRLGRPYVLWKYAATLDGRVAAADATSRWITSAESRAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA++DA++VG GT ADDP+L R ++ + ++++ +
Sbjct: 183 VHRLRAEADAVVVGSGTARADDPQLGVRGIDGAVQPLRVVVDTGATAVKPGARVLDGSAP 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + D L + D+ LL L RGV S+L+EGG +A SF
Sbjct: 243 TLVAVAEDADASHLPKDAVLRLPRAADGRGLDVPALLAALHARGVRSVLLEGGPVLAGSF 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + VD+++ Y + +++G G + + G D+ + +
Sbjct: 303 VAAGTVDTVVGYLAPVLLGAGPAALADAGITTLSQALRLAVTETVRIGPDLRVTAVP 359
>gi|329956196|ref|ZP_08296876.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
gi|328524670|gb|EGF51731.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056]
Length = 347
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 97/333 (29%), Positives = 148/333 (44%), Gaps = 14/333 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ ++ + + NP V ++V DG +IG G G HAEV A+ E
Sbjct: 4 EKYMRRCIQLAQNGLCNAAPNPMVGAVVVCDGKIIGEGYHVRCGEAHAEVNAIRSVKEPS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182
V + E E + + ++T R +ITLK A S D I V ++ ++
Sbjct: 124 VTVGVLEQECRNLIRRFITFHTLHRPYITLKWAESADRYIDNFREGGKPVILSNPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ AI+VG T D+P LT R + + I L L
Sbjct: 184 VHKKRAEHSAIMVGTRTAELDNPGLTVRNWQGRSPVRIVIDRKQKLSPELHLFDGNVRTL 243
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I L +++ L +G+ SLLVEGG + SF
Sbjct: 244 VFT--------EKPHSPQSNIEYIPIDFRQNILPQIMEYLYAQGLQSLLVEGGNILLQSF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
I++ L D + S ++ G+ +P +
Sbjct: 296 IDAELWDEAFVEESPSMLFS-GVKAPEIGDKIP 327
>gi|332703475|ref|ZP_08423563.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
Walvis Bay]
gi|332553624|gb|EGJ50668.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str.
Walvis Bay]
Length = 380
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 109/373 (29%), Positives = 172/373 (46%), Gaps = 20/373 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ A FM AL + G T+ NP V ++V+DG V+ G G PHAE +A+ +A
Sbjct: 2 TDHAIFMRRALELAERCRGFTAPNPCVGAVLVRDGQVVAEGWHKIYGGPHAEREAIADAR 61
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G + YVTLEPCSH+G++PPC + I+E GIRRV V D + V GRG ++L
Sbjct: 62 AKGVDTSTCDMYVTLEPCSHHGKTPPCTEAILEAGIRRVFVGCKDLNPTVPGRGTEYLLS 121
Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
KG+ V+ ++E E + + ++ + + R+ TLK+A++ D IG ++G S
Sbjct: 122 KGVQVELGILEQECRDAIADFMLWKTQGRAWCTLKLAMTLDGRIGGPTGKPESVSGPESH 181
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR---IILDPHFKLSLDSKII 237
+V LLRA+SDA+L+G GT+ ADDP LTCRL R I+ S +
Sbjct: 182 RRVQLLRARSDAVLIGGGTLRADDPRLTCRLQPEGNAQVKRPLAIVATRKLTGISASFYL 241
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--------LLTILVGRGVTS 289
+ +I T ++ A R ++ + L + G
Sbjct: 242 LRERPSELIFWTTDEAARSDTADRLGDMGCRVWGLPEHSAGGLDLAAGLERFMRDAGGHY 301
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--- 346
+L EGG +A S D + ++ + +G+ P+ +E V
Sbjct: 302 VLCEGGGHMAMSLALQSAADELKVFLAPRALGDERAPASFAGRSVESVAEAVDWRVLRAE 361
Query: 347 --GSDVCLEYIGK 357
GSD+ + +
Sbjct: 362 PSGSDLEITLRPQ 374
>gi|303327265|ref|ZP_07357707.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
gi|302863253|gb|EFL86185.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3]
Length = 385
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 96/376 (25%), Positives = 158/376 (42%), Gaps = 23/376 (6%)
Query: 3 VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
++ D FM A+ + NP+V ++++DG V+ RG G HAEV L+
Sbjct: 1 MTEQDFAPFMREAIALAEQGRWKACPNPTVGAVLLRDGRVVARGWHHEAGQDHAEVDCLK 60
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G + +G T VTLEPC+H G++PPC Q I++ GI RVV+ + DP+ + +G G
Sbjct: 61 DAATRGVDPKGCTLVVTLEPCNHQGKTPPCTQAILDAGISRVVMGLADPNPQAAG-GAAR 119
Query: 119 LSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L G+ V + E+E + + +L Q R ++ LK+A + D I S I+
Sbjct: 120 LRDTGMEVLGPVCEAECRDLVADFLVWQSTDRPYVILKMAATLDGRIATRNGQSQWISCE 179
Query: 178 ISKNQVHLLRA----QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
S+++V LRA A+LVG GT AD+P LT R +G P+ +L
Sbjct: 180 TSRHEVQELRAGLGLSGGAVLVGGGTFRADNPRLTAREDGYDGPQPLACLLTSRLPKPDA 239
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNI--------NIIYCDCRDLKKLLTILVGR 285
+ I + A + + + +
Sbjct: 240 DFHLLKERPGQTIFLASPAAAASTTAQALRQMGVRVLALGPGPQGGPDFPELFRALRREL 299
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE----EGYLEKNFMC 340
G +L EGG +A + + + VD L+ + +++G+ P
Sbjct: 300 GCPYVLCEGGGRLALALLEAGFVDEFHLHLAPMILGDSDARPLFAGRAPLSLDEALRLRV 359
Query: 341 VRRDYFGSDVCLEYIG 356
R G+DV +
Sbjct: 360 SRTGLCGNDVHILLRP 375
>gi|170288788|ref|YP_001739026.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
gi|170176291|gb|ACB09343.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2]
Length = 348
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 110/361 (30%), Positives = 170/361 (47%), Gaps = 20/361 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G
Sbjct: 3 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ ++ +
Sbjct: 63 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIE 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+++ ++E E K ++T +KR + LK A + D I S IT + +VH
Sbjct: 123 VIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITD-KLRFKVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R A+LVG GTVL DDP+LTCRL +P+R+ILD LS +
Sbjct: 182 EMRNIYSAVLVGAGTVLKDDPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFEENARV 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + ++ +L L R + S+LVEGG+ V F++
Sbjct: 240 IVFTESEEAE-------YPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLD 292
Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
D + + S + G+G L + + F V ++ S+ +E C +
Sbjct: 293 H--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMR---TCSR 347
Query: 363 E 363
E
Sbjct: 348 E 348
>gi|15834728|ref|NP_296487.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
gi|7190138|gb|AAF38983.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg]
Length = 396
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 164/361 (45%), Gaps = 9/361 (2%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M VSS FM A+ NP V C+IVK+G +IGRG G PHAEV A
Sbjct: 26 MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 85
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
++ GA YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L
Sbjct: 86 FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 145
Query: 120 SQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + E YL ++ + +K A S D S I+G
Sbjct: 146 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 205
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKI 236
++ V LRA+S A++VG TV D+P L+ R+ E P+R+++D + LD+++
Sbjct: 206 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 265
Query: 237 IKTALLAPVIIVTENDDPVLALA--FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ TE R + DLK+LL L +G +LVEG
Sbjct: 266 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 325
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVC 351
GA + +F LV++ ++Y +G+ G P + ++ + G V
Sbjct: 326 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 385
Query: 352 L 352
Sbjct: 386 T 386
>gi|160885546|ref|ZP_02066549.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
gi|156109168|gb|EDO10913.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483]
Length = 351
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 106/344 (30%), Positives = 163/344 (47%), Gaps = 14/344 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E
Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G
Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182
V + E E + + ++T R +ITLK A S D I + ++ ++
Sbjct: 130 VTVGILEEECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I +
Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNVP 247
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V A I + L++++ +L R + SLLVEGG+ + SF
Sbjct: 248 TLVF------TEKKQPARTNITYISIDFNHNPLEQIMEVLYQRKIQSLLVEGGSQLLQSF 301
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
IN L D + + + G+ +P + F
Sbjct: 302 INDELWDEAYIEKCPSRL-HSGVQAPQMNDNFSYSIEEHFERQF 344
>gi|150003437|ref|YP_001298181.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
8482]
gi|254881264|ref|ZP_05253974.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
gi|149931861|gb|ABR38559.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC
8482]
gi|254834057|gb|EET14366.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA]
Length = 350
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 108/350 (30%), Positives = 176/350 (50%), Gaps = 17/350 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E
Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+G+G++ L + GI
Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPYSQVAGKGIEKLRKAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKN 181
V + E E + + ++T KR +ITLK A S D I + + ++ ++
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ +
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFNGKI 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V P + + L +++ +L + + SLLVEGG+ + S
Sbjct: 242 KTFVFTRESPCQPNALTE-----YISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
FI+S L D + ++ + + GI +P +K+F + YFG ++
Sbjct: 297 FIDSGLWDEAFIEKAPLRL-NNGIQAP---SIQKKHFKLNKI-YFGREIM 341
>gi|294777680|ref|ZP_06743131.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
gi|319640266|ref|ZP_07994991.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
gi|294448748|gb|EFG17297.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510]
gi|317388041|gb|EFV68895.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A]
Length = 350
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 109/350 (31%), Positives = 176/350 (50%), Gaps = 17/350 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E
Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+GRG++ L + GI
Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPFSQVAGRGIEKLRKAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKN 181
V + E E + + ++T KR +ITLK A S D I + + ++ ++
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ +
Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFNGKI 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V P + + L +++ +L + + SLLVEGG+ + S
Sbjct: 242 KTFVFTRESPCQPNALTE-----YISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
FI+S L D + ++ + + GI +P +K+F + YFG ++
Sbjct: 297 FIDSGLWDEAFIEKAPLRL-NNGIQAP---SIQKKHFKLNKI-YFGREIM 341
>gi|254718884|ref|ZP_05180695.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
gi|265983870|ref|ZP_06096605.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
gi|264662462|gb|EEZ32723.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13]
Length = 373
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 166/358 (46%), Positives = 224/358 (62%), Gaps = 7/358 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL EAGE
Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI V
Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + L YL R K + LK+A+S D MIG G G V ITG +S+ Q H+
Sbjct: 135 VPGILSEQAADDLAGYLNRSARKCPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L SK++++A P+
Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPPSSKLVRSADTQPL 254
Query: 246 IIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + P A + + L +LL L +G+ S+LVEGGA VA
Sbjct: 255 WVACGEEAPDERRAALSAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314
Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+
Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372
>gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ralstonia eutropha JMP134]
gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ralstonia eutropha JMP134]
Length = 371
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 176/353 (49%), Gaps = 15/353 (4%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
+ T+ NP V C++ K+G +IG+G T G HAE+QAL++A G + GATAYVTL
Sbjct: 19 RGMFTTTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTL 78
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGK 135
EPCSH+GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L GI V +E E +
Sbjct: 79 EPCSHFGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
+++R + +K+A S D + S ITG +++ H RA++ AIL
Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKTALLAPVIIVTEND 252
GIGTV D+P++T R P R+++D ++ LD++ L PV++ + D
Sbjct: 199 GIGTVRDDNPQMTVRAIP-TPRQPQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVD 257
Query: 253 DPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
D A + +L+K+L L RG+ L VE G + S I
Sbjct: 258 DRERRHALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCA 317
Query: 309 DSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
D +++Y + ++G+ PL +F G D+ L +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLPPLSRLQDAASFRWHDVRQIGEDLRLIARRSD 370
>gi|315093789|gb|EFT65765.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL060PA1]
Length = 331
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%)
Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D R+ M AL + NP V C+IV + VIG+G G PHAEV+AL +
Sbjct: 1 MDQRWDDAMVLALDMAAKSPCP-DPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ V+ G QWL
Sbjct: 60 AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTH 118
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + SE L+ + Q+ +R + K A S D S ITG +++
Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QV L RA+ AI+VG GT LAD+P LT R + + ++
Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVR---------LPGVTRQPLRV----------- 218
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V +P R + + ++ D ++L +L RGV + +EGG +A +
Sbjct: 219 ------VVGMREPPAECHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
F+ + L+D +I + + V+G G + + +F+ G D+ +
Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|255532071|ref|YP_003092443.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
2366]
gi|255345055|gb|ACU04381.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM
2366]
Length = 353
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 106/362 (29%), Positives = 160/362 (44%), Gaps = 26/362 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M L + +G S NP V C+IV DG +IG G A G HAEV A+
Sbjct: 4 ELYMQRCLELAAMGMGNVSPNPMVGCVIVSDGKIIGEGYHARFGEAHAEVNAINSVVHNY 63
Query: 68 RG--------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
ATAYV+LEPC+H+G++PPCA +I+ I++VV+ DP V+G+G++ L
Sbjct: 64 GNTAETLLAAATAYVSLEPCAHFGKTPPCADLLIKHRIKKVVIGNTDPFDGVNGKGIEKL 123
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + E+E + TR ++ +I LK A S + I+G
Sbjct: 124 KNAGIEVVSGVLEAECSQLNRRFFTRIGQQHPYIILKWATSANGYFAPENTTQQWISGPE 183
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+K VH R + DA+LVG T +AD+P LT R +P+RI++D H ++ I
Sbjct: 184 AKKLVHKWRTEEDAVLVGRLTAMADNPRLTVR--EWYGRNPVRIVVDRHLQVPSSHHIYN 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + D I + +K+ L + S+++EGGA V
Sbjct: 242 KEAKTIIFNEQKTDV-----QENIHFIQMEDMQHYLPQKIAFQLYLMDIASVIIEGGAQV 296
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRRDYFGSDVCLEYI 355
+ FI +RL D ++RS + P E N + G D Y
Sbjct: 297 LNQFIQARLWDEARVFRS-------AVSWPAGIPSPELNLQSCAITDQFPIGKDQLTIYK 349
Query: 356 GK 357
Sbjct: 350 NN 351
>gi|163759204|ref|ZP_02166290.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
DFL-43]
gi|162283608|gb|EDQ33893.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica
DFL-43]
Length = 379
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 166/362 (45%), Positives = 220/362 (60%), Gaps = 10/362 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHAEVQAL 60
+ D RFM+AA+R +RWH G T +NPSVA LIV+ + ++GRGVTA GG PHAE QAL
Sbjct: 17 ALDRRFMAAAIRLARWHQGRTGSNPSVATLIVREINDEPVIVGRGVTAVGGRPHAEPQAL 76
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSGRG Q L
Sbjct: 77 AEAGDLARGATAYVTLEPCAHHGRTPPCAEALVSAGVSRVVAAASDPDDRVSGRGYQILR 136
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I V+ + E L YLTR+++ R H+TLK+A+S++ IG G V ITG +S
Sbjct: 137 DARIEVEENVLAEEAARDLAGYLTRRMKNRVHVTLKLALSRNGKIGRRDGGQVLITGEVS 196
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
QVH LRAQ+D IL+GIGT L DDP LTCR+ GL++ SP+R++LD KL + SK+++T
Sbjct: 197 NRQVHALRAQADVILIGIGTALNDDPSLTCRIEGLEDRSPIRLVLDTQLKLPVASKLVRT 256
Query: 240 ALLAPVIIVTENDDPVL-----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A P+ I T A A + L +LL L RG++S+LVEG
Sbjct: 257 AREVPLWIATSAAQDHPARAGLAAAGADFIACETHDGQIALPELLEDLAARGLSSVLVEG 316
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G VA +F+ LVD +IL QI I + +P G + F FG+D E+
Sbjct: 317 GEQVAEAFLAEGLVDRLILLTGQIDIEGDAVDAPFAPGIVPPGFRKTSSMTFGADHMDEF 376
Query: 355 IG 356
Sbjct: 377 ER 378
>gi|312887826|ref|ZP_07747413.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
18603]
gi|311299645|gb|EFQ76727.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM
18603]
Length = 343
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 105/354 (29%), Positives = 161/354 (45%), Gaps = 22/354 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-------A 63
M L ++ +G S NP V +IV G +IG G G HAEV A+ A
Sbjct: 1 MLRCLELAKLGLGSVSPNPMVGAVIVHQGRIIGEGYHQRYGEAHAEVNAVNNVINRFDDA 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ + YV+LEPC+HYG++PPCA II+ I VVV DP +V+G+G++ L G
Sbjct: 61 AQLLSESVIYVSLEPCAHYGKTPPCADLIIKHQIPEVVVGCRDPFDQVNGKGIEKLQAAG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E E + TR ++ R +I LK A ++D A + ITG S+
Sbjct: 121 VKVTVGVLEKECLDLNKRFFTRILKHRPYIILKWAQTEDCFFAPADQSQLWITGEESRKL 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R + DAILVG T D+P+L R + P RI++D +LS + + +
Sbjct: 181 VHQWRGEEDAILVGKNTAAIDNPQLNVRYGPGKS--PKRIVIDRRLELSKELYLFDQTVE 238
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + ++ N +L L + + S+++EGGA F
Sbjct: 239 TFVFNEVKTEFDGKVKYISLEDFNYYVPQY-----ILYQLYLQDIQSVIIEGGATTLAHF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
I L D ++ I + + GI +P +G + V D G+DV
Sbjct: 294 IKDGLWDEARIFTGAITL-KKGIQAPQIKGDV------VSEDRVGNDVLKIIRP 340
>gi|114765495|ref|ZP_01444605.1| riboflavin biosynthesis protein RibD [Pelagibaca bermudensis
HTCC2601]
gi|114542205|gb|EAU45236.1| riboflavin biosynthesis protein RibD [Roseovarius sp. HTCC2601]
Length = 350
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 130/345 (37%), Positives = 180/345 (52%), Gaps = 11/345 (3%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
+G NP+V C+IVKDG V+GRG TA GG PHAE QAL +AGE ARGATAYVTLEPCSH
Sbjct: 1 MGQCWPNPAVGCVIVKDGRVVGRGATAPGGRPHAEPQALAQAGEAARGATAYVTLEPCSH 60
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
+G++PPCA+ +++ G+ RVV + D D RVSG+G L + GI V + +E HA
Sbjct: 61 HGKTPPCAEALVKSGVARVVAPLADNDARVSGQGFAHLRKHGIEVTTGVLAEDAARDHAG 120
Query: 142 LT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R R +TLK+A S D I A S ITG ++ VH LRA DA++VG GT
Sbjct: 121 FFLRNDHGRPLVTLKLANSFDGRIATATGESQWITGPEARRYVHGLRASHDAVMVGAGTA 180
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
ADDP LT R G + P+R+I+ + L S + +A PV + +D +
Sbjct: 181 RADDPALTVRGWG-EVQQPVRVIVSRLIDVPLMSTLASSAREVPVWLAHGSDAASMTKRA 239
Query: 261 RKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ + D LL+ L G+T + EGG +A S + + LVD ++ +
Sbjct: 240 WQSCGAKLLQCKVSGGRIDPHALLSALGKEGLTRVFCEGGGQLAASLLAADLVDELVGFT 299
Query: 316 SQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ I +G G P ++ F G DV +
Sbjct: 300 AGIAVGAEGRPGIGAMGVDRLAEAPRFELEEVRAVGGDVLHRWRR 344
>gi|314924237|gb|EFS88068.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL001PA1]
gi|314964911|gb|EFT09010.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL082PA2]
gi|315103908|gb|EFT75884.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL050PA2]
gi|327325608|gb|EGE67407.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL103PA1]
Length = 331
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%)
Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D R+ M AL + NP V C+IV + VIG+G G PHAEV+AL +
Sbjct: 1 MDQRWDDAMVLALDMAAKSPCP-DPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG++A+GATA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ V+ G QWL
Sbjct: 60 AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTH 118
Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + SE L+ + Q+ +R + K A S D S ITG +++
Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QV L RA+ AI+VG GT LAD+P LT R + + ++
Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVR---------LPGVTRQPLRV----------- 218
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V +P R + + ++ D ++L +L RGV + +EGG +A +
Sbjct: 219 ------VVGMREPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
F+ + L+D +I + + V+G G + + +F+ G D+ +
Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|312623117|ref|YP_004024730.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203584|gb|ADQ46911.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor
kronotskyensis 2002]
Length = 371
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 103/361 (28%), Positives = 159/361 (44%), Gaps = 15/361 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A
Sbjct: 6 HSYYMNMALELAKEASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKN 65
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + +T YVTLEPC HYG+ PC + II+ GI+RVV+ DP+ V+G+G+Q L Q G
Sbjct: 66 GYLLKNSTMYVTLEPCCHYGKQLPCTEAIIKSGIKRVVIATKDPNPLVNGKGIQILKQHG 125
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
V + + E + + +I +K+A S D I +
Sbjct: 126 TEVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIAIPSNKRFLFNTEEENVF 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+
Sbjct: 186 VHSLRQKYMATLVSVNTVISDNPILNAR-YGQIVRQPIRVVLDSKLRIPLECNIVKTSDK 244
Query: 243 APVIIVTENDDPVL-------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
IV + + DL L + + S+LVEGG
Sbjct: 245 YSTYIVCSENVNDTQKIELLSQKGIKIIFAKSSEDGHLDLLDTFLKLAQQKIVSVLVEGG 304
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCL 352
+ + S + R+ D + IG + E + F + +
Sbjct: 305 SLLNFSLLKQRIADYWYSLIFNVFIGGQNTKGAVGGEGFEQFFPKLANTKVTTFRNSTII 364
Query: 353 E 353
E
Sbjct: 365 E 365
>gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY]
gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY]
Length = 370
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 111/359 (30%), Positives = 169/359 (47%), Gaps = 13/359 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
F+S AL + + L++ NP V C+I D G V+G+G T G PHAEV AL +A G
Sbjct: 7 FISQALGLAAQALFLSNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGN 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGATAYVTLEPC+H GR+ PC +I+ GI RVV V DP+ V+G+G L G+
Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVA 126
Query: 126 VDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + E + + +R V + +K A S D + + S IT ++ H
Sbjct: 127 VEAGPGAAETRELNIGFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGH 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L GIGTVL DDP L R P +I+D + +++ A
Sbjct: 187 AWRARACAVLSGIGTVLEDDPLLNVREVAT-PRQPHLVIVDSRLQTPPGARLFDVADRQV 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHS 301
+I + + + ++ + R L +L R V L VE G + S
Sbjct: 246 LIYAAQGEAQAAEALRARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNGS 305
Query: 302 FINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ LVD ++LY++ +++G G PL+ G D+ +
Sbjct: 306 FLREGLVDEMLLYQAPLLLGSGAHGLASWGPLQALSDGVRMEFHSVRQIGPDLRVVARV 364
>gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
SRS30216]
gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans
SRS30216]
Length = 338
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 111/360 (30%), Positives = 156/360 (43%), Gaps = 30/360 (8%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
MP D M+ A+ + +G TS NP V C+++ G V G G G PHAEV A
Sbjct: 1 MP----DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNA 56
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG+ ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP G +
Sbjct: 57 LAAAGDRARGGTAYVTLEPCNHTGRTGPCVQALLRAGIARVVFAVADPGALAGGGARELR 116
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ +V ++ E + A+LT R H+ K A + D A S I+ S
Sbjct: 117 AAGVEVVAGVLAEEAERVNEAWLTSARRHRPHVLWKFAATLDGRSAAADGTSRWISSAAS 176
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ QVH LR + DA++ G GTVLADDP LT R + + + + + +
Sbjct: 177 RGQVHDLRRRVDAVVAGSGTVLADDPRLTAREPDGTLSARQPLRVVVDRRGRVPATAAVL 236
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
AP + LL L RGV S+L+EGG +A
Sbjct: 237 DGSAPTL----------------------VSTAATPADLLAELHERGVVSVLLEGGPTLA 274
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ + LVD + Y + ++G G + + G DV L
Sbjct: 275 GAFLAAGLVDRVTAYVAPTLLGAGPAALAGTGITTIADAVGLDVDDVSVVGGDVRLSGRP 334
>gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
HTCC5015]
gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
HTCC5015]
Length = 363
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 165/357 (46%), Gaps = 15/357 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---EA 67
M+ AL+ + + T +NP V C+I + V+ G G HAEV+AL+ E +
Sbjct: 1 MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
ATAYVTLEPCSHYG++ PC++ +I+ GI RVV + DP+ V+G GL L Q G+ V
Sbjct: 61 STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120
Query: 128 RM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ESE + ++ R + LK+A S D +A S IT ++ H
Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDSKIIKTAL 241
RA++DAI+ G+ TVLAD+ LT R + Q P+R++LD + D+ ++ A
Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLVEGGAAV 298
++ D P L L L GV E GA +
Sbjct: 241 RVLILHRDGADSPRLRALLDAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGARL 300
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
A S + LVD ++ Y + ++IG P L+ +K F V G D
Sbjct: 301 AGSLLEEGLVDELLYYLAPVLIGSEAKPIAEFSLQALSEKKAFKVVEERRMGRDWRF 357
>gi|314927222|gb|EFS91053.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL044PA1]
Length = 331
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 35/355 (9%)
Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D R+ M+ AL + NP V C+IV D VIG+G G PHAE++AL +
Sbjct: 1 MDQRWDAAMTLALNMAGKSPCP-DPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATA VTLEPC+H GR+ PC+ +++ GI RVV+ DP+ + G QWL
Sbjct: 60 AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNP-AASGGEQWLRAH 118
Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V ++ + + Q+ +R + K A S D S ITG +++
Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QV L R++ AI++G GT LADDP L RL G+ ++ +
Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVPRQPLRVVVGLRDL----PADCHLRDD 234
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + +D ++L L RG+ + +EGG +A +
Sbjct: 235 SAPTLHIRSHD----------------------PVEVLDQLWHRGIHRVWLEGGPRLAGA 272
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
F+ + LVD +I + + +V+G+G + +F+ G D+ +
Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327
>gi|313835935|gb|EFS73649.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL037PA2]
gi|314970655|gb|EFT14753.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL037PA3]
gi|328906122|gb|EGG25897.1| riboflavin biosynthesis protein RibD [Propionibacterium sp. P08]
Length = 331
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 35/355 (9%)
Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D R+ M+ AL + NP V C+IV D VIG+G G PHAE++AL +
Sbjct: 1 MDQRWDAAMTLALNMAGKSPCP-DPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG+ ARGATA VTLEPC+H GR+ PC+ +++ GI RVV+ DP+ + G QWL
Sbjct: 60 AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNP-AASGGEQWLRAH 118
Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V ++ + + Q+ +R + K A S D S ITG +++
Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
QV L R++ AI++G GT LADDP L RL G+ ++ +
Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVTRQPLRVVVGLRDL----PADCHLRDD 234
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP + + +D ++L L RG+ + +EGG +A +
Sbjct: 235 SAPTLHIRSHD----------------------PVEVLDQLWHRGIHRVWLEGGPRLAGA 272
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
F+ + LVD +I + + +V+G+G + +F+ G D+ +
Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327
>gi|332885428|gb|EGK05677.1| riboflavin biosynthesis protein RibD [Dysgonomonas mossii DSM
22836]
Length = 348
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 99/336 (29%), Positives = 148/336 (44%), Gaps = 12/336 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M L+ + G S NP V ++V + +IG G G HAEV A+
Sbjct: 2 TVDEKYMYRCLQLALNGKGFVSPNPMVGAVVVHNDKIIGEGFHREYGKAHAEVNAIASVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ + +T YV+LEPC+H G++PPCAQ II+ I VV+ DP VSGRG++ L
Sbjct: 62 DKSLLKESTIYVSLEPCAHQGKTPPCAQLIIDNQIPHVVIACLDPYPAVSGRGIKMLQDA 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI VD + L+ K R +I LK A +QD I A N
Sbjct: 122 GIKVDVGILEREAWELNKEFFTIQTKGRPYIYLKWAQTQDGFIDKARDEKDIPQPTPISN 181
Query: 182 QVHLLRAQSDAILVG---IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ + +V IGT A + +P+R+ILD ++ LD I
Sbjct: 182 EFSKMLVHKKRAVVPAIMIGTNTAIKDNPSLTTRHWYGKNPVRVILDRQGRIPLDYTIFD 241
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ V E+ K I D L+ + T L R + S+LVEGG +
Sbjct: 242 GKVETIVFTEKESSPK-----LEKVTFIQIPFDENILENIFTTLKKRKIISVLVEGGQEL 296
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
S I+ RL D + S I G+ +P+ G++
Sbjct: 297 LQSIIDKRLWDEAFIEISGITF-NNGVRAPIIAGHV 331
>gi|304391942|ref|ZP_07373884.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
gi|303296171|gb|EFL90529.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130]
Length = 367
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 135/355 (38%), Positives = 184/355 (51%), Gaps = 4/355 (1%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M + A +M A LR +R H GLT TNPSV L+VKDG V+GRG+TA GG PHAE
Sbjct: 7 MARNEPRTHAEWMGACLRLARRHRGLTGTNPSVGTLLVKDGRVVGRGITAKGGRPHAERV 66
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL++AG A G+ AYVTLEPC+H+G +PPCAQ +I G+ V DPD RV G+G
Sbjct: 67 ALDQAGPNAVGSIAYVTLEPCAHHGATPPCAQALINAGVAEVHTAYIDPDHRVDGKGHAM 126
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
L + I V SE + + + + V ITG +
Sbjct: 127 LREAEIAVHAGQGSEIAGSDMRGYLTRKRLGRPMVTLKLAVSRDGMLGRTGEEVSITGPL 186
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ VH +RA+ DAI VG GTV ADDP+LTCRL+GL+ SP R I D L+ S+++
Sbjct: 187 ARAMVHRMRAEHDAIAVGRGTVEADDPDLTCRLSGLEARSPERFIFDSAGVLTETSRLVA 246
Query: 239 TALLAPV--IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+A PV I L + + L ++L L RG++SL++EGGA
Sbjct: 247 SARTVPVHLISTLPGLPEHLLASGVRHFAAEAENGHIALPEVLDDLGARGISSLMLEGGA 306
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+A SF+N+ LVD I + +G GI SP+ + F R G +
Sbjct: 307 QLASSFLNAGLVDEIAFFVGAKDVGPDGIASPITLATIPAEFNAGRTLQLGPNQL 361
>gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira
thiodismutans ASO3-1]
Length = 371
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 92/371 (24%), Positives = 153/371 (41%), Gaps = 19/371 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M S FM AL +R G T+ NP V L+ ++G+G G HAEV+A+
Sbjct: 1 MNQSE----FMLKALGLARQAKGFTAPNPCVGALVTCGDRIMGKGWHRAPGENHAEVEAI 56
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
E A G + YVTLEPC+H+GR+PPC +I+ GI +++ DP+ +V G G +
Sbjct: 57 ENARENGADLSSCRMYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAE 116
Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
+L G+ V + E + + + Q R ++ LK A + D I S +T
Sbjct: 117 FLRNHGLRVTVGVEEQKCLDLIADFSLWQNSGRPYVYLKTASTLDGRIATRTGHSRWVTS 176
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ VH LR+ A+LVG T D+P LTCR+ ++ ++ D +
Sbjct: 177 ANARQMVHQLRSIVGAVLVGGNTFYQDNPALTCRIQEVKNQPWAVVLTSRLPDPDQDFYL 236
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI------LVGRGVTSL 290
++ + +N A + + + L G+ L
Sbjct: 237 LQKRASRTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLDLKLGLEMLRRETGIYYL 296
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDY 345
L EGG +A S + L D + + + ++G+ +E +F
Sbjct: 297 LCEGGGQLASSLLQQGLADEVWAFVALKILGDSLAVPVTSGREVELMDQTLDFRPGEILN 356
Query: 346 FGSDVCLEYIG 356
G ++ L
Sbjct: 357 LGPEILLRLFP 367
>gi|332676151|gb|AEE72967.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes 266]
Length = 323
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 108/347 (31%), Positives = 165/347 (47%), Gaps = 32/347 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL + NP V C+IV + VIG+G G PHAEV+AL +AG++ RGA
Sbjct: 1 MALALDMAAKSPCP-DPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGA 59
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ V+ G QWL G+ V +
Sbjct: 60 TAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGV 118
Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
SE L+ + Q+ +R + K A S D S ITG +++QV L RA+
Sbjct: 119 LSEEATALNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRAR 178
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AI+VG GT LAD+P LT R + + ++ V
Sbjct: 179 CGAIIVGTGTALADNPRLTVR---------LPGVTHQPLRV-----------------VV 212
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+P R + + ++ D ++L +L RGV + +EGG +A +F+ + LVD
Sbjct: 213 GMREPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVD 272
Query: 310 SIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+I + + V+G G + +F+ G D+ +
Sbjct: 273 EVIAHMAPTVLGGGRAAVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 319
>gi|325299195|ref|YP_004259112.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
18170]
gi|324318748|gb|ADY36639.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM
18170]
Length = 356
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 111/348 (31%), Positives = 167/348 (47%), Gaps = 14/348 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +++S ++ ++ + T NP V +IV +IG G G HAEV A+
Sbjct: 2 TQDEKYISRCIQLAKNGLCNTPPNPMVGAVIVYQDRIIGEGYHIRCGEGHAEVNAIASVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+E R +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L
Sbjct: 62 DESLLRQSTLYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCTDPFPLVSGRGIQKLRDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFIS 179
G+ V + E E K + ++T +++R +ITLK A S D I V ++ ++
Sbjct: 122 GVEVKVGVLEQECKDLIRRFVTFNLKQRPYITLKWAQSADGFIDVLRQEGTPVKLSSPLT 181
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH LRA+ AILVG T L D+P LT R +P+R+++D L ++
Sbjct: 182 SMYVHKLRAEHQAILVGRKTALLDNPSLTVR--EWYGKNPLRLVIDRDLSLPASLRLFDG 239
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ V E + + L ++ L V SLLVEGG+ +
Sbjct: 240 STPTWVFTSKEKA------SRPNLTYVRLDFGQDILPQIAQALCENKVQSLLVEGGSTLL 293
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
SFI+ + D I + V+G+ G+P+P + + G
Sbjct: 294 QSFIDRGMWDEIYAEHTSAVLGK-GVPAPAIPSGIPVGYSIRDNSVIG 340
>gi|256819357|ref|YP_003140636.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
7271]
gi|256580940|gb|ACU92075.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM
7271]
Length = 331
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 96/337 (28%), Positives = 156/337 (46%), Gaps = 16/337 (4%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S D +M ++ + +G T NP V +IV +G +IG G G HAEV+
Sbjct: 1 MTTSELTIDEWYMRRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60
Query: 59 ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A+ ++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G+
Sbjct: 61 AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120
Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SV 172
+ L G V + E+E + + T + R +I LK A ++D I
Sbjct: 121 EKLRNAGCEVIVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP +
Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + + I + L+++ L + S++V
Sbjct: 239 EFAVWNDRT-----TTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
EGGA FI+ L D +++ I G G+ +P+
Sbjct: 294 EGGAYTLQQFIDEGLWDEAVVFTGDICFG-EGVKAPI 329
>gi|254469111|ref|ZP_05082516.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
gi|211960946|gb|EEA96141.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062]
Length = 381
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 130/367 (35%), Positives = 202/367 (55%), Gaps = 13/367 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60
+ RFM+AAL + G T NP V ++ KD +++G+G T G HAEV A+
Sbjct: 13 AEHERFMAAALSYGIRAKGRTWPNPPVGAILTKDFGDGPVIVGQGATLPPGGSHAEVLAI 72
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++AGE A+GATAYVTLEPC+HYGR+ PCA+ ++ G+ RVV DP+ V+GRG + L
Sbjct: 73 KDAGEHAKGATAYVTLEPCAHYGRTGPCARALVAAGVSRVVYGTADPNPAVAGRGKKILE 132
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ G+ V + E E + + +++R + +R + LK+AVS+D IG G G V I+ +S
Sbjct: 133 EGGVEVLIGVLEKECREAVRGHISRILNERPFVQLKMAVSKDGYIGKRGAGQVAISSPLS 192
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH +RAQ DAI+VGIGTVL DDPEL+ RL G+ SP ++ D ++ L SK+++
Sbjct: 193 RQLVHAMRAQMDAIVVGIGTVLEDDPELSVRLPGMAHRSPQPVVFDSQARIPLSSKLVQN 252
Query: 240 ALLAPVIIVTENDDPVL------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
A + +V ++ P + + L K L L G++ ++VE
Sbjct: 253 AESNSLWVVIGDNAPDHRVSALEREGVTVIVNDCLRNGKVCLDKALDALYMHGLSQIMVE 312
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPSPLEEG-YLEKNFMCVRRDYFGSDVC 351
GGA +AH + LVD +++++ +G G +P E L+ + + G D+
Sbjct: 313 GGAELAHGLLQQDLVDELLIFQGTSTVGSDGLLPFGFEGLESLQDGYNKQMLRHVGEDLL 372
Query: 352 LEYIGKN 358
Y K
Sbjct: 373 WRYTPKE 379
>gi|255349125|ref|ZP_05381132.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 70]
gi|255503662|ref|ZP_05382052.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 70s]
gi|255507341|ref|ZP_05382980.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis D(s)2923]
gi|289525774|emb|CBJ15255.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis Sweden2]
gi|296435349|gb|ADH17527.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis E/150]
gi|296439066|gb|ADH21219.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis E/11023]
Length = 375
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 102/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|166154072|ref|YP_001654190.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 434/Bu]
gi|166154947|ref|YP_001653202.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|165930060|emb|CAP03543.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 434/Bu]
gi|165930935|emb|CAP06497.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 375
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 102/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|296395033|ref|YP_003659917.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
44985]
gi|296182180|gb|ADG99086.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM
44985]
Length = 343
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 115/365 (31%), Positives = 161/365 (44%), Gaps = 36/365 (9%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57
MPV D FM A+ SR G TS NP V ++V DG ++GRG T G HAEV
Sbjct: 1 MPVRDLPVDEAFMREAIAVSRLARGRTSPNPPVGAVLVSPDGQIVGRGATRPPGQEHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL +AGE ARGATAYVTLEPC+H GR+ PCA+ +++ G+ VV V DP+ R G
Sbjct: 61 VALAQAGERARGATAYVTLEPCNHVGRTGPCARALVDAGVAAVVCAVPDPNQRSGGGAKT 120
Query: 118 WLSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
+ G+ V + L +L Q R H+T K A + D S ITG
Sbjct: 121 LEAAGVGVRVGVLAHEARTGPLREWLHAQRTGRPHVTWKFAATLDGRSAARDGSSQWITG 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
+ VH +RA+ DAI+VG GT LADDP LT RL +
Sbjct: 181 PQIRKSVHAVRAELDAIIVGTGTALADDPWLTARLPDGSLAPRQPTRVVVGMTELPRGAR 240
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ V+ T + LA+ +L+EGG
Sbjct: 241 VLDGSAPTVLAKTRDPAEALAMLGDAV-------------------------HVLLEGGP 275
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351
+A +F+ + LVD + + + +++G G P+ L + + F G DV
Sbjct: 276 TLAAAFLRAGLVDLVQAHIAPVLLGAG--PAALGDLGIATLADALRFTVEEVRQVGRDVL 333
Query: 352 LEYIG 356
++
Sbjct: 334 VQLAP 338
>gi|317154507|ref|YP_004122555.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
Aspo-2]
gi|316944758|gb|ADU63809.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis
Aspo-2]
Length = 377
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 101/365 (27%), Positives = 159/365 (43%), Gaps = 19/365 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M+ A+ +R G + NP V ++V ++ G G HAE + L +A G
Sbjct: 14 MARAIELARLGRGAVAPNPCVGAVLVDGDRIVAEGWHMRYGGLHAERECLVDARSKGVTP 73
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RG T +VTLEPC+H+G++PPC Q +IE G+ RVVV DP+ V+ G++ L+ GI V+
Sbjct: 74 RGLTMFVTLEPCNHHGKTPPCTQALIEEGVARVVVGTRDPNP-VAAGGIERLTAAGIEVE 132
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
ESE + + +L Q + +K+A + D I P++ S +VH L
Sbjct: 133 VGALESECRDLIADFLVWQNSHSTFNIIKMAATLDGKIASRLRRPEPVSCAESFARVHAL 192
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI---ILDPHFKLSLDSKIIKTALLA 243
R++ DAI+VG T ADDP LTCRL L + I + +T
Sbjct: 193 RSRVDAIIVGGSTFRADDPSLTCRLTTLPDGFVQPYGVVITSRLPDDPARHVLTRTRPER 252
Query: 244 PVIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + T + D + + L + G + L EGG
Sbjct: 253 TIFMTTDTSARSQEADRLREGGTSVWPLPGPPGGLNLSLGLERLRYDLGCHTTLCEGGGQ 312
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352
+A F+ L D I+ + + ++G+ G PS N+ + GSD+ L
Sbjct: 313 LAMQFVGQGLGDEIVHFVAPRILGDEGAPSAYSGRQGVTMAQTLNYRIIDMHPSGSDIML 372
Query: 353 EYIGK 357
+
Sbjct: 373 TLRPR 377
>gi|189219671|ref|YP_001940312.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
infernorum V4]
gi|189186529|gb|ACD83714.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum
infernorum V4]
Length = 376
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 100/357 (28%), Positives = 159/357 (44%), Gaps = 29/357 (8%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +M AL+++ GLTS NP+V ++VK+G +IGRG G HAE++A+E
Sbjct: 21 NFSPEDRYWMKEALKWALLGEGLTSPNPAVGAVLVKEGTLIGRGYHRKAGQAHAEIEAIE 80
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A GE G+T YVTLEPCS +G++PPC + I++ I RVV DP+ R R ++
Sbjct: 81 DAKKRGESVAGSTLYVTLEPCSSWGKTPPCTERIVKEKISRVVASSPDPNPRNKPRAVEL 140
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
L G+ + E + R + + + KIA++ D + I+G
Sbjct: 141 LPSLGVDFSWEILEEALFLNRGFYHRILTGKPWVIGKIAMAIDGSLSAGVGEERWISGIA 200
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKII 237
++ H LR +DAIL+G T D+P LT R ++ + P R+I+ L D +
Sbjct: 201 ARTVAHRLRMIADAILIGAQTARTDNPRLTIRLVDPKGKIQPWRVIVSRSGNLPGDLFLF 260
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A ++ + ++L L R V LLVEGGA
Sbjct: 261 TDAFKERTLLFVKMPWE----------------------RVLGELGSRDVGILLVEGGAE 298
Query: 298 VAHSFINSRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
V H I + + + S ++IG+ + + + F D+
Sbjct: 299 VLHQLIKEGWIQEVSFFLSPLIIGKQPLEDSSTDASFLSVPLELVNPSWQKFDEDMY 355
>gi|94986602|ref|YP_594535.1| pyrimidine reductase, riboflavin biosynthesis [Lawsonia
intracellularis PHE/MN1-00]
gi|94730851|emb|CAJ54213.1| Pyrimidine reductase, riboflavin biosynthesis [Lawsonia
intracellularis PHE/MN1-00]
Length = 382
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/382 (22%), Positives = 150/382 (39%), Gaps = 26/382 (6%)
Query: 1 MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M + M A+ + T+ NP V +++++G ++ G + G PHAEV
Sbjct: 1 MSLQVNHPYDYAMKYAISIAEKGRWDTAPNPVVGSVLIQNGKIVAEGFHSLYGGPHAEVL 60
Query: 59 ALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+ +A + T TLEPC+HYG++PPC + II+ I+ V++ DP ++ G
Sbjct: 61 CINDAKNKHINLSDCTLITTLEPCNHYGKTPPCTKAIIDNNIKHVIIGTKDPTT-LASGG 119
Query: 116 LQWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ L+ GI V+ + + L ++T Q R +I LK+A + D I + S I
Sbjct: 120 VHTLTSAGITVEVGILEKECQALIADFITWQNTSRPYILLKLATTLDGKIATSTGHSKWI 179
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTV------LADDPELTCRLNGLQEHSPMRIILDPHF 228
+ +S+ +VH LR + I N + P+ II+
Sbjct: 180 SSEVSRQKVHKLRENVGKVGGAILIGGNTLKLDNPQLTCRNNNNNNKIQQPLAIIITSTL 239
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---- 284
D + + +I T +K I L IL
Sbjct: 240 PEQQDIYLFNSRPTETIIYTTPQSGSTQQATTLRKKGVKIVTLKNWSPDLSAILTDITEH 299
Query: 285 ----RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLE 335
+G +L EGG + S + + LVD + +Y S ++G+ + +
Sbjct: 300 IRSTQGCLYMLCEGGGKLGSSLLKANLVDELHIYLSPKILGDNNALPIVNGRNPLTIHDA 359
Query: 336 KNFMCVRRDYFGSDVCLEYIGK 357
+ + GSD+ L + +
Sbjct: 360 ISLKIHTMELSGSDIHLTFRPE 381
>gi|320546418|ref|ZP_08040733.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
9812]
gi|320448803|gb|EFW89531.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC
9812]
Length = 351
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 106/357 (29%), Positives = 163/357 (45%), Gaps = 12/357 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
D +M A+ ++ T TNP V +IVKD VI RG G HAE A+
Sbjct: 1 MDKNYMLQAIEEAKRGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+E GI++VV DP+ V+G+G+ +L ++G
Sbjct: 61 PEELFNSTLYVTLEPCHHGGKQPPCTQAIVEVGIKKVVAGQFDPNPLVAGKGVAFLKEQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E E + Y KR ++ LK AVS D I +T +
Sbjct: 121 IEVVTHVLEEEARALNKHYNVYYERKRPYVVLKQAVSLDGKI-AVLGKRTALTDDETSRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AILVG TVL D+P L P+R+ILD ++ +
Sbjct: 180 VHDERDDFHAILVGADTVLIDNPRLLGSETSFCP--PVRVILDEKGRVFDQLDLQIFEDN 237
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + + + ++ K++ +I ++ +L +L + + S+ VEGGA+V +F
Sbjct: 238 SAPVYIFSS----RKVSDLPKHVTVIDLPEFSIENILQVLYEKKLQSVYVEGGASVHDAF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCLEYIGK 357
+ S L D II Y + +IG + + G+++ L +
Sbjct: 294 LESGLFDEIISYVTPKLIGGNAKAAMSSFRLVSHALELDDFSCQKIGNNIRLSARRR 350
>gi|149186473|ref|ZP_01864786.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
gi|148830062|gb|EDL48500.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21]
Length = 329
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 135/361 (37%), Positives = 174/361 (48%), Gaps = 44/361 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ DAR++ AA R + L NP+V CL+V G VI RG T GG PHAE AL
Sbjct: 1 MIPTASDARWLDAAARLASRGRPLARPNPAVGCLLVNKGRVIARGWTREGGRPHAEAVAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
E+AG ARGATAYVTLEPC+H P C+ +++ G+ RVVV DPD R SG GL+ L
Sbjct: 61 EQAGSAARGATAYVTLEPCAHRSTRGPACSDLLVKAGVARVVVGALDPDPRTSGEGLERL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + K L YL R R H+TLK+A+S D I MA S ITG +
Sbjct: 121 RRSGIEVSQDYTEAVKASLAGYLIRAHRGRPHVTLKLALSLDGCIAMADGSSQWITGEEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH RA SDAILVG GT D P L RL GL++ SP R++L
Sbjct: 181 RAHVHSRRAMSDAILVGGGTWRQDKPHLDVRLPGLEDRSPARVLLSRG------------ 228
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + + I GV L VEGGA A
Sbjct: 229 ---------------------------VPPDGVKVINDPAQIAQLEGVHYLYVEGGAGAA 261
Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-IPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYI 355
SF+ + LVD + +YR+ I+IG G + G L + ++ GSD Y
Sbjct: 262 ASFVRADLVDRLEIYRAPILIGNGAPALGDIGLGSLAEAHGRWVLAETRRLGSDTYTAYR 321
Query: 356 G 356
Sbjct: 322 R 322
>gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8]
Length = 397
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 103/372 (27%), Positives = 154/372 (41%), Gaps = 23/372 (6%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66
+M L +R G S NP V +++ DG V+G G G PHAE +AL+ A ++
Sbjct: 27 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86
Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G
Sbjct: 87 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146
Query: 124 IIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V+ + + A+ R +TLK A + D I S ITG ++
Sbjct: 147 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 206
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ D ILVG GT DDP LT R + + + A
Sbjct: 207 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQPLRLVLDRKGTLSPDRTLFTDAHADD 266
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----------GRGVTSLL 291
++ + P A + I+ D L + + SLL
Sbjct: 267 TVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQSLL 326
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFG 347
VE G +A + LVD + + V+G G P+ + E F G
Sbjct: 327 VEAGPGLATALFRQDLVDRFFCFVAPKVLG-DGRPALHDLGITEMDGALTFAEQAWATVG 385
Query: 348 SDVCLEYIGKNL 359
+DV L + +
Sbjct: 386 ADVLLRGYRRTV 397
>gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855]
Length = 373
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 103/372 (27%), Positives = 154/372 (41%), Gaps = 23/372 (6%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66
+M L +R G S NP V +++ DG V+G G G PHAE +AL+ A ++
Sbjct: 3 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62
Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G
Sbjct: 63 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122
Query: 124 IIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V+ + + A+ R +TLK A + D I S ITG ++
Sbjct: 123 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ D ILVG GT DDP LT R + + + A
Sbjct: 183 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQPLRLVLDRKGTLSPDRTLFTDAHADD 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----------GRGVTSLL 291
++ + P A + I+ D L + + SLL
Sbjct: 243 TVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQSLL 302
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFG 347
VE G +A + LVD + + V+G G P+ + E F G
Sbjct: 303 VEAGPGLATALFRQDLVDRFFCFVAPKVLG-DGRPALHDLGITEMDGALTFAEQAWATVG 361
Query: 348 SDVCLEYIGKNL 359
+DV L + +
Sbjct: 362 ADVLLRGYRRTV 373
>gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946]
Length = 383
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 21/369 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FM AL + +G TS NP V C++V+ V+GRG G PHAEV AL +AGE
Sbjct: 6 DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGAEVVGRGFHPRAGEPHAEVLALRQAGER 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAY+TLEPC+HYGR+PPCAQ +IE G+ RVVV DP+ +VSGRGL+ L++ G+ V
Sbjct: 66 AQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVAV 125
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + + + K A+S D + ++G ++ +V L
Sbjct: 126 TTGLLRDEAERQQEVFRHWIAHREPFVVFKTALSLDGKTATVAGDARWVSGEAARERVQL 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
LR + DA++VG+GTVL DDP LTCR + P++++ D H + +++
Sbjct: 186 LRDELDAVVVGVGTVLTDDPWLTCRLREPAVPHRVPRDPVKVVFDTHARTPPRARLFAPG 245
Query: 241 LLAPVIIV---------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
V + + + L+ L L RG+T LL
Sbjct: 246 PRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAGPDGRPRLEAALQALEARGLTGLL 305
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
+EGG+ +A SF ++ V ++ + + ++G G P+PL + ++ VR +
Sbjct: 306 LEGGSVLAGSFFDAGKVHKVVAFVAPKLVGGRG-PTPLAGNGVARMSQARHLERVRVEPL 364
Query: 347 GSDVCLEYI 355
G+DV +E
Sbjct: 365 GTDVLVEGY 373
>gi|120434994|ref|YP_860680.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
forsetii KT0803]
gi|117577144|emb|CAL65613.1| bifunctional riboflavin biosynthesis protein RibD [Gramella
forsetii KT0803]
Length = 347
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 15/357 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ +++ + ++ +G T NP V +IV +IG G G PHAEV A+
Sbjct: 2 NIHEKYIKRCIELAQNGLGTTYPNPMVGSVIVYKNKIIGEGWHKKAGEPHAEVNAINSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ + A YV+LEPCSH+G++PPC+ II GI++V++ DP +V+GRG++ L
Sbjct: 62 DQSLLKHAIIYVSLEPCSHFGKTPPCSDLIIAKGIKKVIIGTMDPFAKVAGRGIKKLMDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT-GFISK 180
G V+ + E E + T Q ++R +I LK A +QD I
Sbjct: 122 GCEVNVGILEEECLELNKRFFTFQKKQRPYIILKWAQTQDGFIAPEKKDKKRPVWITNKY 181
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+ + + +S+ + +GT + + + +P+RII+D + K+S D ++
Sbjct: 182 SGQLVHKWRSEETAILVGTNTVIEDNPSLNVRKWTGSNPVRIIIDQNLKISKDHSVLDEK 241
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
V+ I +++ +L + S+++EGG+
Sbjct: 242 QKTVVL----CKKKTTGSEDGNIIFEEIEFSENISQEICDVLHKYDLQSVIIEGGSNTLQ 297
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
FI + L D + + G+ +P G V D+ Y
Sbjct: 298 QFIKAGLWDEARVLTGSSYF-QSGVKAPEISGI------PVAEKNISGDLLKIYKND 347
>gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus taiwanensis LMG 19424]
gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus taiwanensis LMG 19424]
Length = 371
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 174/353 (49%), Gaps = 15/353 (4%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
+ T+ NP V C+++KDG VIG+G T G HAE+QA+++A G + GATAYVTL
Sbjct: 19 RGMFNTTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTL 78
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGK 135
EPCSH+GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L GI V +E E +
Sbjct: 79 EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
+++R + +K+A S D + S ITG +++ H RA++ AIL
Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKTALLAPVIIVTEND 252
GIGTV D+P LT R P R+++D ++ LD++ PV++ +
Sbjct: 199 GIGTVRDDNPALTVRAFA-TPRQPQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVE 257
Query: 253 DPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
D A + +L+++L L RG+ L VE G + S +
Sbjct: 258 DRQRQRALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317
Query: 309 DSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
D +++Y + ++G+ PL + F G D+ L +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLPPLARLQDAEQFRWHEVRQIGDDLRLIARRND 370
>gi|301335276|ref|ZP_07223520.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis L2tet1]
Length = 375
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 103/330 (31%), Positives = 157/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL LV RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLVERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|228469568|ref|ZP_04054561.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
gi|228308918|gb|EEK17593.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3]
Length = 338
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 113/340 (33%), Positives = 158/340 (46%), Gaps = 16/340 (4%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M ++ D +M L+ + G TS NP V +IV +IG G Y G PHAEV
Sbjct: 1 MKRTAPTTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEV 60
Query: 58 QALEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A EE RG AT YV+LEPC+HYG++PPCA+ I RVVV + DP +V G
Sbjct: 61 MAWRSVPEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDG 120
Query: 114 RGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMI----GMAG 168
RG+ L + GI V + I +L Q R ++TLK A S D+ I A
Sbjct: 121 RGVARLREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDAS 180
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + + VH LR DAILVG T DDP LT R + +L H
Sbjct: 181 EAPYIFSSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSGCGGQP---IRLLWCHS 237
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+L + A II+ + +++ LLT+L +G+
Sbjct: 238 RLPRPELRMLQDATARTIILLPPTLMAQVPDGQYPPHVSCLATTGEVRDLLTLLRSQGIE 297
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
SLLVEGGA V F++S L D + + + + + G+P+P
Sbjct: 298 SLLVEGGAQVLQRFLDSGLYDELNVEHAPVEL-HDGVPAP 336
>gi|253564134|ref|ZP_04841591.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
gi|251947910|gb|EES88192.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5]
gi|301161570|emb|CBW21110.1| putative riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacteroides fragilis 638R]
Length = 340
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 102/330 (30%), Positives = 162/330 (49%), Gaps = 14/330 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + +
Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G V
Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQVHL 185
+ E E + + ++T R +I LK A S D I + V ++ ++ VH
Sbjct: 121 GVLEPECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + ++ V
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHLSDNSVSTLV 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ L ++L+ L R + SL+VEGG + SFI S
Sbjct: 239 FTEHPRSGK------ENLEYITLNYQTDILPQILSALYQRNLQSLMVEGGRILLESFIRS 292
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ D +I+ +S ++ G+ +P +
Sbjct: 293 GIWDEVIIEKSDKLL-YSGVKAPEISDKIS 321
>gi|189462016|ref|ZP_03010801.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
gi|189431230|gb|EDV00215.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136]
Length = 344
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 112/355 (31%), Positives = 174/355 (49%), Gaps = 19/355 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++ ++ +R + + NP V +IV + +IG G G HAEV A+ +E
Sbjct: 4 DEKYIRRCIQLARNGMCNAAPNPMVGAVIVCNDRIIGEGYHVRCGEGHAEVNAIRSVKDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L GI
Sbjct: 64 SLLKKSTIYVSLEPCSHYGKTPPCADLIISKGIPRVVVGCVDPFSLVSGRGIQKLRDAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKN 181
V + E+E + + ++T ++KR +ITLK A S D I + V ++ I+
Sbjct: 124 EVTVGVLENECRALIKRFVTFNIQKRPYITLKWAESADGFIDVNRESGQPVILSTPITSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ AILVG T L D+P LT R +P+R+++D L L+ K+
Sbjct: 184 YVHKQRAEHQAILVGRKTALLDNPSLTTR--NWYGKNPIRLVIDKELTLPLNLKLFDGKT 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V E + + + + L ++L IL + SLLVEGG+ + S
Sbjct: 242 PTWVFTALEKE------STTNIIYYKLDFNQNILPQILQILYENKLQSLLVEGGSQLLQS 295
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FI+ + D I + S+ ++ +G + GY ++ + + Y
Sbjct: 296 FIDEEIWDEIYIEYSEALLHKGVKHPVVPAGYGKQVLSK------DKNTIIHYEK 344
>gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
Length = 371
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 176/353 (49%), Gaps = 15/353 (4%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76
+ +T+ NP V C++VKDG VIG+G T G HAE+QA+++A G + G+TAYVTL
Sbjct: 19 RGMFITTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTL 78
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGK 135
EPCSH+GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L + G+ V +E E +
Sbjct: 79 EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEAR 138
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
+++R + +K+A S D + S ITG +++ H RA++ AIL
Sbjct: 139 DLNIGFVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKTALLAPVIIVTEND 252
GIGTV D+P LT R P R+++D ++ LD++ PV++ +
Sbjct: 199 GIGTVRDDNPALTVRAIA-TPRQPQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVE 257
Query: 253 DPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
D A + + +L+++L L RG+ L VE G + S +
Sbjct: 258 DRERQRALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317
Query: 309 DSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
D +++Y + ++G+ PL F G D+ L +
Sbjct: 318 DELLIYLAPKLLGDAQGMFNLPPLARLQDAAQFRWHEIRQIGDDLRLIARRND 370
>gi|145628121|ref|ZP_01783922.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
22.1-21]
gi|144979896|gb|EDJ89555.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae
22.1-21]
Length = 339
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 113/337 (33%), Positives = 172/337 (51%), Gaps = 20/337 (5%)
Query: 37 KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
K+G ++G G G PHAE AL +AGE A+GATAYVTLEPCSHYGR+PPCA +IE G
Sbjct: 5 KNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAG 64
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
+ +V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + LK
Sbjct: 65 VVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLK 124
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+A+S D MA S ITG +++ V +RA+S A+L TV+ADDP L R +
Sbjct: 125 LAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFP 184
Query: 216 EH-----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
E+ P+R+ILD ++ K+ T ++ D F
Sbjct: 185 ENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFLTHSPVWLVSSEPRD----LTGFPDFC 240
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+
Sbjct: 241 EQIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 300
Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L + + + G D+ L Y K
Sbjct: 301 RGLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 337
>gi|228472970|ref|ZP_04057727.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
ATCC 33624]
gi|228275552|gb|EEK14329.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis
ATCC 33624]
Length = 347
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 99/359 (27%), Positives = 154/359 (42%), Gaps = 22/359 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R+M L + +G T NP V +IV G +IG G G PHAEV A+
Sbjct: 2 TIDQRYMQRCLSLAGKALGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAIASVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ + + YV LEPC+H+G++PPCA IIE I +VV+ D +V+G+G++ L +
Sbjct: 62 DSSLLKESVLYVNLEPCAHFGKTPPCADLIIEKEIPKVVIGCMDIFSKVAGKGIERLQKA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178
G V + E+E + + T + R +I LK A +++ +I I+
Sbjct: 122 GREVVVGVLENECQALNTRFFTFHSKGRPYIILKWAQTRNGLIAPLHQEQQAPVWISNEF 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ HL RA+ AILVG TV D+P LT R + + I +
Sbjct: 182 SQQLTHLWRAEEGAILVGRTTVERDNPSLTVRHWVGKNPLRLVIEGEHSL-----LDTFN 236
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P ++ + P + + D ++ L R + SL+VEGGA V
Sbjct: 237 VFQGEPTVVFSSKQSPN----TEHVSYQTLSSDLSMPNEVCNYLYDRQIQSLIVEGGAQV 292
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
FI+ L D ++ + GI +PL L + + D Y
Sbjct: 293 LQQFISEGLWDEARIFVGKSQF-SEGIKAPL----LHEPWE--SVHNVEGDYLFIYKNP 344
>gi|254456442|ref|ZP_05069871.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083444|gb|EDZ60870.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp.
HTCC7211]
Length = 353
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/353 (33%), Positives = 179/353 (50%), Gaps = 11/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R + GLT TNPSV C+IVK +I G T+Y G PHAEV A++ + E A
Sbjct: 1 MDLALDLARSNEGLTGTNPSVGCIIVKHDKIISIGQTSYNGRPHAEVNAIKNSIENLNDA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
T YVTLEPCSH+G +PPC II+ ++ V+ + D D RV G+ + L K I V
Sbjct: 61 TMYVTLEPCSHHGVTPPCTSSIIKSKLKEVIYSIIDIDQRVKGKTYKILKSKKIKVRTGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ + K F Y + +K +++ KIA+S++N+I + IT S H LR +
Sbjct: 121 LKKKVKQFYTPYFFNRQKKLPYVSGKIAISKNNLIFS--KKNRKITNIKSDKFTHFLRYK 178
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+D+IL+ T+ D+P+L CRL GL++ SP RIILD K + +S + KTA I
Sbjct: 179 NDSILISYRTLNKDNPKLNCRLKGLEKFSPKRIILDNKLKTNTNSYLFKTANKENTIFFY 238
Query: 250 ENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
L F+K I NI + + L G ++LVEGG + +F++
Sbjct: 239 NEAIKSKILEFKKNKITVLKLNIDNNKRFNPSIIFKKLYTLGCRNVLVEGGDELTKNFVS 298
Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFM--CVRRDYFGSDVCLEY 354
+++ + L++ + + L+KN+ FG D Y
Sbjct: 299 NKIFNQFFLFKGSKDLSKSFEFKEFSGLKILKKNYKKRLKINSNFGKDTITLY 351
>gi|300812786|ref|ZP_07093184.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496238|gb|EFK31362.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 351
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 100/357 (28%), Positives = 159/357 (44%), Gaps = 9/357 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
+ D +M A+ +R T NP V +VKDG V+ G + G HAE + +
Sbjct: 2 ASDEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKLT 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E+ +T YVTLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G
Sbjct: 62 PEQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAG 121
Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + ++ Y ++TLK A++ D+M+ ITG + +
Sbjct: 122 LEVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHML-AKKGERTAITGAEAWTR 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA A+L+G T + DDP L + + + + LD ++
Sbjct: 181 VHQERAGYQAVLIGSETAIIDDPLLLTSEDLVHPPVRVVLDRRGRLLEHLDLRLFSDKRA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
I+ D + + K + K+ L +GV S+ EGGA + S
Sbjct: 241 ETWILTENPDFLEQDMPKQVKIFALPDGKISTSIKI---LADQGVQSVYAEGGAHLQESL 297
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ + LV+ +I Y + +G G + E + V+ + G DV + K++
Sbjct: 298 LAAGLVNDVISYVAPRFLGRGTEAAVAAE---ALDLKDVQTEQVGDDVRIYGRIKDV 351
>gi|54401353|gb|AAV34447.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
[uncultured proteobacterium RedeBAC7D11]
Length = 366
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 89/368 (24%), Positives = 151/368 (41%), Gaps = 21/368 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
D+ F+S A+ V C+IVKD +IGRG G HAE+ A+ + +
Sbjct: 3 DSFFISKAISLGLKGRFTAKPGVKVGCVIVKDNKIIGRGFYQKYGGSHAEINAINDVKKK 62
Query: 66 -------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ G+ +VTLEPCS G++ C + + +R++V DP + G+
Sbjct: 63 YKTNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIIVGAKDP----TQSGINS 118
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
L + G V + + +I ++ + K+ + K+A+S D+ A ITG
Sbjct: 119 LQRAGYEVKNLNNQQCQILNESFFHKVKSKKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDS 234
++N V +LRA++D IL G GT+ D+P + R P R + KL+ +
Sbjct: 179 ARNDVQILRAEADIILTGAGTINEDNPSMNVRSKKIIANENFIQPERYVFSNSLKLNWSA 238
Query: 235 KIIKTALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
K V+ ++ + + D + K + + V ++L+E
Sbjct: 239 PFFKLPGKKVVVTSKKSLPKLSQGIKDISLMNLGKNNDSLNSKDFIKRISKLNVNNILIE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSD 349
G + SF + LVD I Y S +G+ + L +K F V G D
Sbjct: 299 AGPRLLGSFSDHDLVDEYIFYISPEKLGDKALHFYGGNKQLNFFDKKLFDIVDETNIGKD 358
Query: 350 VCLEYIGK 357
+ K
Sbjct: 359 KKITLRKK 366
>gi|222099734|ref|YP_002534302.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
4359]
gi|221572124|gb|ACM22936.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM
4359]
Length = 348
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 165/361 (45%), Gaps = 20/361 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
RFM A+ ++ +G + NP V ++VK+G +I G Y G PHAE A+E A G
Sbjct: 3 ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPYFGGPHAERVAIESAKRKG 62
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ +
Sbjct: 63 EDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNPVSGSGVEKLKKHGIE 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V+ ++E E K ++T E R I LK A + D I A S IT +++ H
Sbjct: 123 VVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQ-DLRHKAH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+R A+LVG TVL DDP LTCR +P R+ILD LS S +
Sbjct: 182 EMRNVYSAVLVGARTVLKDDPRLTCR--LKGGRNPTRVILDRRGILSGGSYRVFEDNARV 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + + + +L +L +GV S+LVEGG+ V F+
Sbjct: 240 IVFTENKEAK-------YPVHVEKVLNDCSVGGILKVLYEKGVDSVLVEGGSEVLGEFLE 292
Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
D + + S V GEG F VR ++ +++ LE C +
Sbjct: 293 --YADVVFAFYSTKVFGEGLDVFSGYRSSVSDPPRFRIVRSEHTDTELFLEMRP---CSR 347
Query: 363 E 363
Sbjct: 348 G 348
>gi|265765179|ref|ZP_06093454.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
gi|263254563|gb|EEZ25997.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16]
Length = 340
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 163/330 (49%), Gaps = 14/330 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + +
Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G V
Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQVHL 185
+ E+E + + ++T R +I LK A S D I + V ++ ++ VH
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + ++ V
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHLSDNSVSTLV 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ L ++L+ L R + SL++EGG + SFI S
Sbjct: 239 FTEHPRAGK------ENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRS 292
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ D +I+ +S ++ G+ +P +
Sbjct: 293 GIWDEVIIEKSDKLL-YSGVKAPEISDKIS 321
>gi|222151702|ref|YP_002560858.1| hypothetical protein MCCL_1455 [Macrococcus caseolyticus JCSC5402]
gi|222120827|dbj|BAH18162.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 341
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 18/352 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
+++ A +W G T NP+V C+IVKD ++G G G HAEV A+ AG A+G
Sbjct: 2 YINKAFELVKWTEGQTGMNPAVGCVIVKDDRIVGIGAHLTEGEAHAEVNAIHMAGSHAQG 61
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT Y TLEPCSH+G++PPC + I+ GI +VV D G++++ + I V+++
Sbjct: 62 ATLYCTLEPCSHHGKTPPCTEKIVAAGISKVVYAASDV---TLSSGVKYMRSESIEVEKV 118
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
F + T + ++T+K+A + D S IT S+ H +R +
Sbjct: 119 ECRAIDDFYAPFFTSKTSSLPYVTIKMATTVDGKTADDESISKWITNEKSRAHAHEVRYR 178
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI+VG T D P L RL + + + + L+++ + +IIV+
Sbjct: 179 MDAIMVGYNTYKKDIPTLDARLYKDKRIKKVIVT---NGPFVLNTQDDNDYDRSRLIIVS 235
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ + + +L L + +LL+EGG +FI ++ +
Sbjct: 236 AIEQHIEGVTVIHVPHLSPEH-------ILKALYNERIRNLLIEGGMQTIRTFIEAKYYN 288
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
I Y + ++G L L +F V + F DV L Y
Sbjct: 289 EIHHYIAPKLLGGTSKHQFLTTDTLSSMRDMTHFNLVSVNQFDDDVLLIYRK 340
>gi|306841987|ref|ZP_07474661.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
gi|306843711|ref|ZP_07476311.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
gi|306276021|gb|EFM57730.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1]
gi|306287915|gb|EFM59332.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2]
Length = 373
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 168/372 (45%), Positives = 228/372 (61%), Gaps = 15/372 (4%)
Query: 1 MPVSSF--------DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC 52
M S F D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG
Sbjct: 1 MSASEFPRSKATLNDLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGR 60
Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
PHAE QAL EAGE ARGATAYVTLEPC+H+GR+PPCAQ ++ G+ RVVV DPD RVS
Sbjct: 61 PHAEPQALAEAGEAARGATAYVTLEPCAHHGRTPPCAQALVRAGVTRVVVAATDPDERVS 120
Query: 113 GRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
G+G L + GI V + + L YL R +KR + LK+A+S D MIG G G
Sbjct: 121 GKGFAILREAGIEVVPGILPEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRKGAGQ 180
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
V ITG +S+ Q H+LRAQ+D IL+GI T LADDP L CRL GL+ SP+R++LD +L
Sbjct: 181 VAITGPVSRAQSHILRAQADIILIGIETALADDPVLNCRLPGLESRSPVRVVLDGGLRLP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRG 286
L S+++++A P+ + + A + + L +LL L +G
Sbjct: 241 LSSRLVRSADTQPLWVACREEASDERRAALGAASCRILATETHDGRIALPELLDDLAAQG 300
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDY 345
+ S+LVEGGA VA SF++ +LVD ++++RS +VIG G+ E ++ F +R+
Sbjct: 301 IASVLVEGGAGVAKSFLDEKLVDRLVIFRSPLVIGAADGVAVEELETHIASEFKILRQVR 360
Query: 346 FGSDVCLEYIGK 357
+ D C EY+
Sbjct: 361 YADDACAEYVRN 372
>gi|53711798|ref|YP_097790.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
gi|52214663|dbj|BAD47256.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46]
Length = 340
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 163/330 (49%), Gaps = 14/330 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + +
Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G V
Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQVHL 185
+ E+E + + ++T R +I LK A S D I + V ++ ++ VH
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + ++ V
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWHGHNPVRIVMDRNHSLPQTSHLSDNSVSTLV 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ L ++L+ L R + SL++EGG + SFI S
Sbjct: 239 FTEHPRAGK------ENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRS 292
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ D +I+ +S ++ G+ +P +
Sbjct: 293 GIWDEVIIEKSDKLL-YSGVKAPEISDKIS 321
>gi|315224801|ref|ZP_07866622.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
F0287]
gi|314945204|gb|EFS97232.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea
F0287]
Length = 331
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 95/337 (28%), Positives = 155/337 (45%), Gaps = 16/337 (4%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S D +M ++ + +G T NP V +IV +G +IG G G HAEV+
Sbjct: 1 MTTSELTVDEWYMHRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60
Query: 59 ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A+ ++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G+
Sbjct: 61 AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120
Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SV 172
+ L G V + E+E + + T + R +I LK A ++D I
Sbjct: 121 EKLRNAGCEVTVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP +
Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + + I + L+++ L + S++V
Sbjct: 239 EFAVWNDRT-----TTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
EGG FI+ L D +++ I G G+ +P+
Sbjct: 294 EGGGYTLQQFIDEGLWDEAVVFTGDICFG-EGVKAPI 329
>gi|325288196|ref|YP_004263986.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
gi|324323650|gb|ADY31115.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489]
Length = 350
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 25/366 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + +++ ++ ++ +G T NP V LIV + +IG G T+ G HAEV A+
Sbjct: 1 MKI---HEKYILRCIQIAKNGLGSTFPNPMVGALIVHNNAIIGEGFTSPYGGSHAEVNAI 57
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
++ + +T YVTLEPCSHYG++PPCA II+ I +V+ + DP +V+G G++
Sbjct: 58 NSIKDKSVLKESTIYVTLEPCSHYGKTPPCADLIIKHKIPNIVIGLKDPHEKVAGNGIKK 117
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGS 171
L G V + E E + + +L +KR +I LK A + D I A
Sbjct: 118 LRAAGCNVTIGVLEEECREHHNRFLCFYEKKRPYIILKWAETNDGFIAPLQEKRSATPEP 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
IT ++ VH R++ ILVG T++ D+P+L R SP RII+D + K+
Sbjct: 178 FWITTKAARQLVHQWRSEEQGILVGTNTIIEDNPKLDVR--NWHGKSPTRIIIDQNLKID 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
I+ T++ VI + + + ++ IL + S++
Sbjct: 236 ASKNILNTSVKTIVI----TKESNKNEQLQGIIYESVNFKKPLAMQICNILHKHNILSVI 291
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+EGG+ +FIN L D ++ GI +P G + +D
Sbjct: 292 IEGGSKTLQTFINENLWDEARVFTGTTNF-NKGIAAPKFTG------KLKSTNTIKTDTL 344
Query: 352 LEYIGK 357
Y
Sbjct: 345 KTYYND 350
>gi|255009912|ref|ZP_05282038.1| putative riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacteroides fragilis 3_1_12]
gi|313147700|ref|ZP_07809893.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
gi|313136467|gb|EFR53827.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12]
Length = 346
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 14/333 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ +R + S NP V +IV D +IG G G HAEV A+ +
Sbjct: 4 EKYMRRCIQLARNGLCNVSPNPMVGAVIVCDEQIIGEGYHVRCGEAHAEVNAIRSVKDPS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSH+G++PPCA IIE I ++V+ DP +V+G+G+Q L G
Sbjct: 64 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPKIVIGCQDPFSKVAGKGIQKLRNAGRE 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182
V + E E + + ++T R +I LK A S D I + V ++ ++
Sbjct: 124 VIVGVLEKECRELIQKFITFHTLHRPYIVLKWAESADGFIDLERTEGHPVLLSTPLTSML 183
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+SDAI+VG T L DDP LT R H+P+RI LD + L S ++ +
Sbjct: 184 VHKKRAESDAIMVGTRTALLDDPALTVRH--WYGHNPVRIALDRNHSLPQTSHLLDGS-- 239
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
P +I TE P + L ++L L R + SL+VEGG + SF
Sbjct: 240 VPTLIFTECHRPGKKNL----EYIPLDYQTDILPQILATLYQRNLQSLMVEGGKILLESF 295
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
I S + D II+ RS + G+ +P +
Sbjct: 296 ICSGIWDEIIIERSDKRL-YSGVKAPEISDKIS 327
>gi|91763228|ref|ZP_01265192.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717641|gb|EAS84292.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Pelagibacter ubique HTCC1002]
Length = 366
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 116/361 (32%), Positives = 178/361 (49%), Gaps = 10/361 (2%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D FM AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++
Sbjct: 7 KFSIKDKIFMELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIK 66
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ E G+ YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L+ L
Sbjct: 67 NSHENIEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLKILKS 126
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
K I+V + + + +A +K ++T KIA+S++N+I + I+ +
Sbjct: 127 KNILVKKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLIYS--KDTKRISDIHTD 184
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LR ++D++++ T+ DDP+L CR+ GL + SP RIILD + ++ +S I KTA
Sbjct: 185 KFTHFLRYKNDSLMISSKTLNKDDPKLNCRIKGLSKFSPKRIILDRNLEIKKNSYIFKTA 244
Query: 241 LLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
II N +L + + + D+K +L L G +LLVEGG
Sbjct: 245 NKDNTIIFYHNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGN 304
Query: 297 AVAHSFINSRLVDSIILYRSQI---VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
++ I +L + LY+ + L+E G DV
Sbjct: 305 DLSKHIIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNKFKINKKLGKDVITL 364
Query: 354 Y 354
Y
Sbjct: 365 Y 365
>gi|218531424|ref|YP_002422240.1| riboflavin biosynthesis protein RibD [Methylobacterium
chloromethanicum CM4]
gi|218523727|gb|ACK84312.1| riboflavin biosynthesis protein RibD [Methylobacterium
chloromethanicum CM4]
Length = 376
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 11/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG
Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI
Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E H +V + R + LK+A ++D + + ITG ++ V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252
Query: 244 PVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +++T P A + DL L L RG+T + EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A + L+D+ L + +GE G + + L + + V +G D +
Sbjct: 313 LADTLAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372
Query: 354 YIG 356
Y
Sbjct: 373 YER 375
>gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C]
Length = 376
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 121/352 (34%), Positives = 165/352 (46%), Gaps = 7/352 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I G V+G G G PHAEV AL AGE ARG
Sbjct: 23 MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + SG G + +
Sbjct: 83 GTAYVTLEPCNHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGATLRAAGIDTEAGL 142
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + A+LT R H+T K A + D S IT S+ VH LRA+
Sbjct: 143 LADEAEQGNTAWLTSVRLGRPHVTWKYAATLDGRSAAEDGSSRWITSPESRADVHRLRAE 202
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DA+LVG GT+ ADDP L R P+R+ LD L ++I+ AP +IVT
Sbjct: 203 ADAVLVGGGTLRADDPHLAVRGVD-GAVQPLRVALDTRAGLPATARILDD--AAPTLIVT 259
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D L + L LL L GRGV S+L+EGG +A +F+ + VD
Sbjct: 260 GEDADTAHLPGTDVLRLPLRDGRLPLGPLLAELYGRGVRSVLLEGGPTLAGAFLEAGAVD 319
Query: 310 SIILYR---SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
++ Y + + G D+ + + N
Sbjct: 320 RVVGYIAPALLGAGPAALAGAGITNIAHAVRLDITEAVRTGPDLRITAVPAN 371
>gi|60680029|ref|YP_210173.1| putative riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacteroides fragilis NCTC 9343]
gi|60491463|emb|CAH06213.1| putative riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bacteroides fragilis NCTC 9343]
Length = 340
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 102/330 (30%), Positives = 163/330 (49%), Gaps = 14/330 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + +
Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G V
Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQVHL 185
+ E+E + + ++T R +I LK A S D I + V ++ ++ VH
Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + ++ V
Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHLSDNSVSTLV 238
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ L ++L+ L R + SL++EGG + SFI S
Sbjct: 239 FTEHPRSGK------ENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRS 292
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ D +I+ +S +I G+ +P +
Sbjct: 293 GIWDEVIIEKSDKLI-YSGVKAPEISDKIS 321
>gi|332827503|gb|EGK00249.1| riboflavin biosynthesis protein RibD [Dysgonomonas gadei ATCC
BAA-286]
Length = 355
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 11/327 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M L+ ++ G TS NP V +IV G +IG G G HAEV A+ ++
Sbjct: 5 EKYMYRCLQLAQNGRGFTSPNPMVGAVIVHQGKIIGEGYHRQYGKAHAEVNAVNSVKDKA 64
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ +T YV+LEPCSH+G++PPCAQ II+ I +VVV DP VSGRG++ L +GI
Sbjct: 65 LLKDSTIYVSLEPCSHHGKTPPCAQLIIDNQIPKVVVACLDPYPAVSGRGIKMLQDRGIE 124
Query: 126 VDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKN 181
V + + L+ Q R +I LK A +QD I C P +
Sbjct: 125 VSVGVLEKEAQALNRVFFTAQTRNRPYIYLKWAQTQDGFIDKERCDGEKPQPTPISNEFS 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
++ + + +++ + IGT A + + +P+RII+D ++ ++ +
Sbjct: 185 RMLVHKKRAETAGIMIGTNTAVNDNPSLTTRFWYGKNPVRIIIDRQGRIPSGYQLFDGKV 244
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + + + + +IL + S+LVEGG + S
Sbjct: 245 KTIIF----TEKDLYEKQSDSVIYIRTDFNESLFENIFSILKSHKIDSVLVEGGRELLQS 300
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP 328
I+ ++ D + S G+ G+ +P
Sbjct: 301 LIDIQMWDEAYIETSNACFGK-GVKAP 326
>gi|209548782|ref|YP_002280699.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534538|gb|ACI54473.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 404
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 186/402 (46%), Positives = 239/402 (59%), Gaps = 46/402 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+V+G+ VTA GG PHAE QAL
Sbjct: 1 MSVTPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVVVGQAVTAVGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGAAARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI VD + E++G+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG +
Sbjct: 121 EAGIEVDAGVLEADGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK+++T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVQT 240
Query: 240 ALLAPVIIVTE---------------------------------------------NDDP 254
A PVI+V D
Sbjct: 241 ARDVPVIVVASEEISPSGSEEGLSPSALGANPQPISPLVGEMSGRTEGGATLPAAAMDLD 300
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
A + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY
Sbjct: 301 SRRTALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLY 360
Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++ +VIGEGGI SPL+ + F FG D EY
Sbjct: 361 QAPVVIGEGGIESPLDATDIPPGFAQTGTQMFGEDRLDEYER 402
>gi|89070868|ref|ZP_01158107.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
HTCC2516]
gi|89043556|gb|EAR49766.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus
HTCC2516]
Length = 362
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 123/365 (33%), Positives = 181/365 (49%), Gaps = 13/365 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D RFM+ AL R +G T NPSV C++V+DG ++ R TA GG PHAE++AL
Sbjct: 1 MNEADGRFMALALGLGRQGLGRTWPNPSVGCVLVRDGRILARARTADGGRPHAEMRALAA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
A + RGATAYVTLEPC+H G +P CA + G+ RVV+ D D R +G+G+ L
Sbjct: 61 A--DPRGATAYVTLEPCAHVGETPACASELARAGVARVVIGCADADARTAGQGVAILRAA 118
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V + LHA +R R +TLK+A S D I A S ITG ++
Sbjct: 119 GVAVTTGVREAEARALHAGFLSRVERGRPALTLKLAASLDGRIATATGESQWITGTEARR 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+ DA++VG GT ADDP LT R P+R+++ L D ++ TA
Sbjct: 179 HVHALRARHDAVMVGAGTARADDPALTVR-GLGIARQPVRVVVSRRLDLPRDGRLAATAR 237
Query: 242 LAPVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P+ + D + A + + + +L L G+TS+ EGG
Sbjct: 238 DVPLWLCHGPDAAAASRAAWEAAGARLLPCAVDHGQLAPESVLAALGAAGLTSVFCEGGG 297
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+A S + + LVD ++ Y + +V+G G+P ++ F G D+
Sbjct: 298 GLAASLLAADLVDELVAYSAGLVLGAEGLPMVGAMGVDALAAAPRFHLAETTPIGGDLLH 357
Query: 353 EYIGK 357
+
Sbjct: 358 RWRRD 362
>gi|297748861|gb|ADI51407.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
trachomatis D-EC]
gi|297749741|gb|ADI52419.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
trachomatis D-LC]
Length = 400
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 29 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 88
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 89 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 148
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 149 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 208
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 209 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 268
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 269 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 328
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 329 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 358
>gi|262340928|ref|YP_003283783.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272265|gb|ACY40173.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 343
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 103/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
FMS A++ ++ +G+TS NP V C+I ++G +I G G HAE A+ +
Sbjct: 5 ETFMSRAIQLAKNGLGMTSPNPMVGCVIERNGFIISEGWHYKKGMDHAEAIAINRIKNKS 64
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T YVTLEPC H+G + PC II+ I R+VV + DP +V G G+Q L + GI
Sbjct: 65 LFLDSTLYVTLEPCVHFGETSPCVDLIIKNHIPRIVVGIQDPHDKVKGLGIQKLKEYGIE 124
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +++ + + T + R +I LK A S D IG ++ I+G ++ H
Sbjct: 125 VIENVLKNKCRFLNKRFFTFHEKNRPYIILKWAQSHDGFIGSENKKNIWISGTYARQLNH 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA+ D+ILVG TVL D+P+L R +P+RI +D K+S I+
Sbjct: 185 KWRAEEDSILVGRKTVLNDNPKLNVR--EWFGSNPIRIFIDKKLKISDSHFILDGTQKTI 242
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V + I + + + +L L + + SL+VEGG SFI
Sbjct: 243 VF------TEKKKENQKNIEYIQISFEGKIINHILNFLYKKNILSLIVEGGKKTLESFIK 296
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ D ++ + + + G+ +P G + K GSD+
Sbjct: 297 ENVWDECRIFVCDVTL-KKGLKAPRIGGEVFKKM------NIGSDLLFI 338
>gi|237803160|ref|YP_002888354.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis B/Jali20/OT]
gi|231274394|emb|CAX11189.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis B/Jali20/OT]
Length = 375
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|15605463|ref|NP_220249.1| riboflavin deaminase [Chlamydia trachomatis D/UW-3/CX]
gi|237805081|ref|YP_002889235.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis B/TZ1A828/OT]
gi|255311561|ref|ZP_05354131.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 6276]
gi|255317862|ref|ZP_05359108.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis 6276s]
gi|13633735|sp|O84735|RIBD_CHLTR RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|3329187|gb|AAC68325.1| Riboflavin Deaminase [Chlamydia trachomatis D/UW-3/CX]
gi|231273381|emb|CAX10296.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis B/TZ1A828/OT]
gi|296436276|gb|ADH18450.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis G/9768]
gi|296437205|gb|ADH19375.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis G/11222]
gi|296438136|gb|ADH20297.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis G/11074]
gi|297140637|gb|ADH97395.1| Riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
[Chlamydia trachomatis G/9301]
Length = 375
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|313885967|ref|ZP_07819705.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924497|gb|EFR35268.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
PR426713P-I]
Length = 343
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 110/336 (32%), Positives = 157/336 (46%), Gaps = 13/336 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A
Sbjct: 7 STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66
Query: 62 EAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
EE R AT YV+LEPC+HYG++PPCA+ + RVV+ + DP +V GRG+
Sbjct: 67 SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAGLRPARVVIAMLDPFAKVDGRGVA 126
Query: 118 WLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSV 172
L + GI V + I +L Q R ++TLK A S D+ I A
Sbjct: 127 RLREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
+ + + VH LR+ DAILVG T DDP LT R + +L H +L
Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQP---IRLLWCHSRLPR 243
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ AP I++ + +++ LLT+L +G+ SLLV
Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPTHVSCLATTGEVRDLLTLLHSQGIESLLV 303
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
EGGA V F+++ L D I + + + + G+P+P
Sbjct: 304 EGGAQVLQRFLDAGLYDEINVEHAPVEL-REGVPAP 338
>gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109]
Length = 354
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 13/355 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL + G TS NP V +++ + G ++G G A G HAEV AL +AG+
Sbjct: 3 ELWMRRALALAALAEGHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDA 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L + G+ V
Sbjct: 63 ARGGTLVVTLEPCCHHGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEV 122
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + A+L R R LK A+S D + S I+G + +
Sbjct: 123 ISGVLREEARQQNRAFLHRVRTGRPFGVLKWAMSLDGRTALPNGVSQWISG--PSARDWV 180
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R +S V +G + G + P+R++L L +++ TAL +
Sbjct: 181 HRLRSGMDAVVVGGGTVRGDDPLLTSRGRRSPEPLRVVLSRSLDLPNQAQLWDTALAPTL 240
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ P L + + ++L+ L RG +L E G +A + I
Sbjct: 241 V----AHGPDADLRRLPSGPEELGLSACEPQQLMEALAKRGCNQVLWECGPELAAAAIRQ 296
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYI 355
V I + ++G +PL + + + G+D L +
Sbjct: 297 GCVQEIAAVVAPKLMGGMAARTPLGDLNFRAMDQVLQGQWHHSEPMGNDWLLRWR 351
>gi|260063122|ref|YP_003196202.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
HTCC2501]
gi|88784691|gb|EAR15861.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata
HTCC2501]
Length = 350
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 112/366 (30%), Positives = 167/366 (45%), Gaps = 25/366 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + ++M ++ R +G ++ NP V L+ +IG G T+ G PHAEV A+
Sbjct: 1 MKIQ---EKYMLRCIQIGRNALGRSAPNPMVGALLTHGDTIIGSGYTSAFGGPHAEVNAI 57
Query: 61 EEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ + +T YVTLEPC H+G++PPC IIE GIRRVVV + DP +V+G+G+
Sbjct: 58 RSVADPGKLPDSTLYVTLEPCCHHGKTPPCTDRIIESGIRRVVVGLPDPHDKVAGQGIAQ 117
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG------S 171
L + G V+ + + +LT + R +I LK A S D +
Sbjct: 118 LREAGCQVEVGVAADACREHHKRFLTLHEKGRPYIVLKWAQSPDGFLAPDPEVRGESTGP 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
ITG S+ VH R Q AILVG T ADDP+LT R P+R++LDP +
Sbjct: 178 WWITGRESRQLVHKWRTQESAILVGWRTAAADDPQLTSRDWA--GKDPLRVLLDPSGRAP 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+++ P + V A + + L+ L L RGV S+L
Sbjct: 236 EGLRLLDG--KVPTLRVLHTGQQPTGSA--RVENIFLEPGPGFLRALCRELRERGVLSIL 291
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
VEGGA SF+++ L D ++ + GG+ +P G V G+D
Sbjct: 292 VEGGAHTLGSFLSAGLWDEARVFTGPRPL-NGGLRAPALSG------RLVANTASGADTL 344
Query: 352 LEYIGK 357
+
Sbjct: 345 TLWRND 350
>gi|220904884|ref|YP_002480196.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869183|gb|ACL49518.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 385
Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats.
Identities = 89/378 (23%), Positives = 148/378 (39%), Gaps = 24/378 (6%)
Query: 3 VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S D FM A+ ++ T NP V ++V+DG ++ RG G HAEV L
Sbjct: 1 MSELDYTPFMREAIALAQQGRWKTCPNPMVGAVLVRDGHIVARGWHRAFGLDHAEVDCLN 60
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G + T VTLEPC H G++PPC ++ GI+++VV + DP+ G +
Sbjct: 61 DAAAQGVDPSECTLVVTLEPCCHQGKTPPCTDAVLRAGIKKIVVGLSDPNPEACGGACRL 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+++ + + + +L Q +R ++ LK+A + D I S I+
Sbjct: 121 RESGLDVIEGVCADACRDLVADFLVWQQAQRPYVILKMAATLDGRIATRKGESQWISSEE 180
Query: 179 SKNQVHLLR----AQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLS 231
S+ +V LR A+LVG GT ADDP LT R E P+ +L
Sbjct: 181 SRQEVQRLRAGIGRCGGAVLVGGGTFRADDPRLTVRPINDGEPLGPQPLACVLTSRLPQP 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII--------YCDCRDLKKLLTILV 283
+ + + A +++ + L T+
Sbjct: 241 DADFYLLKERPQQTVFLASPAAAASTTAKALRDMGVRVLSLGPSLRGGPDLTHMLRTMRE 300
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE----EGYLEKNF 338
LL EGG +A S + + +VD L+ + +++G+ P
Sbjct: 301 ELDCPYLLCEGGGHLALSLLEAGVVDEFRLHMAPMILGDADAQPLFSGRAPLSLDEALRM 360
Query: 339 MCVRRDYFGSDVCLEYIG 356
G D+ +E
Sbjct: 361 RVTGSHISGGDIHIELRP 378
>gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus
ATCC 33331]
Length = 366
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 108/351 (30%), Positives = 167/351 (47%), Gaps = 6/351 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I+ G G G G PHAEV AL AGE ARG
Sbjct: 10 MRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAAGERARG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PCAQ +IE G+RRVV V DP+ + +G G L G+ V +
Sbjct: 70 GTAIVTLEPCNHTGRTGPCAQALIEAGVRRVVYAVSDPNPQATG-GADTLRGAGLEVAQG 128
Query: 130 MESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++ + T R ++ K A + D I A S IT ++ VH LRA
Sbjct: 129 LLADEAEAGNTAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARADVHRLRA 188
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
++DA++VG GT ADDP+L R ++ + ++++ + + V +
Sbjct: 189 EADAVVVGSGTARADDPQLGVRGIEGAVQPLRVVVDTGATAVRPGARVLDGSAPSLVAVA 248
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + L + D+ LL L RGV S+L+EGG +A SF+ + V
Sbjct: 249 DDAEAGHLPEEAVLRLPRAATGPGLDIDALLAALHARGVRSVLLEGGPVLAGSFVAAGAV 308
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
D+++ Y + +++G G + + G D+ + +
Sbjct: 309 DTVVGYLAPVLLGAGPAALADAGISTISQALRLDVTETVRIGPDLRITAVP 359
>gi|301308353|ref|ZP_07214307.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
gi|300833823|gb|EFK64439.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3]
Length = 359
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 163/353 (46%), Gaps = 16/353 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIG----MAGCGSVPIT 175
+ G+ V + E L+ Q + R +I LK A S+D I ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLNGFSRTLIFTEKEVENR------ENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
A + +SF+ + + D + + + + + G+ +P+ +
Sbjct: 293 AQLINSFVEADVWDEVRVETAPVRL-YQGVHAPMLGKEAVSGISRRSVMSIKN 344
>gi|241761018|ref|ZP_04759107.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241374637|gb|EER64098.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 323
Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 108/363 (29%), Positives = 162/363 (44%), Gaps = 48/363 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A
Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
L + + +GAT YVTLEPC+H P C+ ++ RVV+ DPD R +G+G+
Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAALPERVVIACRDPDPRTNGQGISK 119
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ GI V+ + + + + + R ++TLK+A S D I + S ITG
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ HL R +S+ I+VG T+ D P L RL GL + + + +
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGD------------RSPKKAVLG 227
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + I + E D + A +L+EGGA
Sbjct: 228 HGEIPSGWIGLREPTDIIKTTAD----------------------------HVLIEGGAK 259
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
A +F+ + LVD I+LYR+ I+IG+G + R G+D
Sbjct: 260 TAAAFLKADLVDRILLYRAPILIGKGLHALADIGLTNLSEAHHRWHLKERRTLGNDQLEA 319
Query: 354 YIG 356
Y+
Sbjct: 320 YLR 322
>gi|225159038|ref|ZP_03725347.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
gi|224802351|gb|EEG20614.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2]
Length = 388
Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 105/364 (28%), Positives = 143/364 (39%), Gaps = 15/364 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ FM AL +R G T NP V +IV+DG V+ G A G PHAE AL G
Sbjct: 6 ARHECFMWQALALARRAWGNTHPNPMVGAIIVEDGAVVAEGWHARDGGPHAERVALTALG 65
Query: 65 EEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ GAT YVTLEPCS +GR+ C IIE GIRRVVV DP+ +G G L G
Sbjct: 66 RAPKPGATLYVTLEPCSTHGRTGACCDAIIEAGIRRVVVGATDPNPDHAGAGYARLRAAG 125
Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + E E + + KIA + D I S ITG ++
Sbjct: 126 VEVITGVRERECADLNLIFNQWITTGLPLLAGKIATTLDGKIACRTGHSKWITGEAARAD 185
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK----LSLDSKIIK 238
VH R AI VG TVLADDP LT R E P R + D + L
Sbjct: 186 VHRWRRLFPAIAVGAMTVLADDPRLTARPADGGEWCPWRFVFDGLLRTLGGPRLPQVYTD 245
Query: 239 TALLAPVIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+++ T + R+ + + +T + EG
Sbjct: 246 GHRERTIVVTTPHGGMGYVRKLREMGVAVWVLDAPTQRVNFADFRRRCAEEKITGVYFEG 305
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349
GA + + SR +D + YR+ ++ + S E + G D
Sbjct: 306 GAQLLSELLRSRELDYLFNYRAPLLFADDKARSVFTGLRTESVQQAVRIQGATTEVHGED 365
Query: 350 VCLE 353
+
Sbjct: 366 SLVR 369
>gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
Length = 396
Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 121/383 (31%), Positives = 178/383 (46%), Gaps = 34/383 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R M+ AL + NP V C++V++G V+G G+ G HAEV AL AGE
Sbjct: 12 DRRHMARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA 71
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGAT YVTLEPCSH+GR+PPC + +I+ G+ RVV+ + DP+ +V G G++ L GI V
Sbjct: 72 ARGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEV 131
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E+E + ++ R + R + +K+A S D MA S ITG ++ V L
Sbjct: 132 ETGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQL 191
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------------EHSPMRIILDPHF 228
RA++ AIL G GTV+ADDP LT RL Q P+R+ILD
Sbjct: 192 WRARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARL 251
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-- 286
+ ++I+K+ PV I+T D A + + G
Sbjct: 252 RTPPGAQILKS---GPVWILTGPDAARSPAADTLRGHGADVRPIALASDSPDGGLDLGEV 308
Query: 287 --------VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLE 335
V L VE G +A + VD +LY++ +++G P PL
Sbjct: 309 LAELARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARPLVEWPLARMDER 368
Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
+ + G + L +
Sbjct: 369 AELEILESRWVGDSLRLRARPRR 391
>gi|146276894|ref|YP_001167053.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
17025]
gi|145555135|gb|ABP69748.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rhodobacter sphaeroides ATCC 17025]
Length = 356
Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 134/356 (37%), Positives = 187/356 (52%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL EAG A GA
Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAEAGAAALGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPC+H+GR+PPCA+ + G+ RVV DPD RV+GRG L GI V +
Sbjct: 61 TAYVTLEPCAHHGRTPPCAEALAAAGVARVVTATGDPDPRVAGRGHALLHAAGIAVTEGV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + +L R +TLK+A S D I A S ITG ++ VH +R +
Sbjct: 121 LEAEARAANAGFLKRVTLGLPFVTLKLAASVDGRIATASGESRWITGAHARRAVHAMRMR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG+GT LADDP+L+ R G H P+RI++D + S DS++ +TA PV +
Sbjct: 181 HDAVMVGVGTALADDPDLSVRDLG-AAHQPVRIVVDSLLRHSCDSRLGRTARHVPVWLCH 239
Query: 250 ENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
D P A A + D D ++ L G+T + EGGA + + +
Sbjct: 240 GPDAPEAARAGWRAAGALLLECEAGPDGLDPAAVMRRLASEGLTRIFCEGGARLGAALVR 299
Query: 305 SRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D ++ + + +IGE G P L + F + G D+ +
Sbjct: 300 AGLCDELVSFTAGKLIGEEGRGAMGPLRLAQLAAAPAFRLASVETVGVDLLARWRP 355
>gi|76789470|ref|YP_328556.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlamydia
trachomatis A/HAR-13]
gi|76168000|gb|AAX51008.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia
trachomatis A/HAR-13]
Length = 375
Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats.
Identities = 101/330 (30%), Positives = 156/330 (47%), Gaps = 5/330 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S FM A+ NP V C+IVK+G VIG G G PHAEV A+++
Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGGVIGEGWHQGIGSPHAEVCAVQD 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L
Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + S+ YL ++ + +K A S D G S I+G +++
Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
V LRA+S AI+VG TV D+P L L E P+R+++D + L+S++
Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAA 297
+ + + T+ + + + + LL L RG +LVEGGA
Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +F +LV++ ++Y +G+ G P
Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPM 333
>gi|146297767|ref|YP_001192358.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
UW101]
gi|146152185|gb|ABQ03039.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae
UW101]
Length = 349
Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats.
Identities = 104/361 (28%), Positives = 171/361 (47%), Gaps = 23/361 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ +++ + +R G T NP V +IV + +IG G G PHAEV A+
Sbjct: 2 NKHEKYIKRCIELARNGFGTTYPNPMVGSVIVYEDTIIGEGWHKKAGEPHAEVNAVRSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ + AT YV+LEPCSH+G++PPC II I VVV DP+ +V+GRG++ L +
Sbjct: 62 DKSLLKKATIYVSLEPCSHFGKTPPCCDLIIANKIPNVVVGTVDPNEKVAGRGIKKLIEA 121
Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPITG 176
G +V ++E E + T +KR +I LK A S D + V IT
Sbjct: 122 GANVVVGILEDECNELNKRFFTFHQKKRPYIILKWAESLDGFLAPEKEIDQERKPVWITN 181
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ VH R++ AIL G TV+ D+P+L R ++P+R+ILD + ++S DS +
Sbjct: 182 QYSRQLVHKWRSEEQAILAGTQTVVDDNPKLNVRDWS--GNNPVRVILDQNNRISKDSFV 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ V +EN ++ I D ++ +L +L + S+++EGG
Sbjct: 240 FDESVKTIVFTKSEN-----MISTENTIFEKIDFDKNSIENILAVLYQHQIQSIIIEGGR 294
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
SFIN + D ++ + + G +P + Y +D + Y+
Sbjct: 295 QTLESFINENIWDEARIFIGKNTF-KKGTKAPELQKQNAIK------TYIQNDELI-YVR 346
Query: 357 K 357
Sbjct: 347 N 347
>gi|255535790|ref|YP_003096161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Flavobacteriaceae bacterium 3519-10]
gi|255341986|gb|ACU08099.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Flavobacteriaceae bacterium 3519-10]
Length = 342
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 99/347 (28%), Positives = 156/347 (44%), Gaps = 15/347 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M + ++ +G T NP V +IV DG +IG G G PHAE+ A+ +
Sbjct: 3 DELYMKRCIELAKKALGQTYPNPMVGSVIVHDGRIIGEGFHQKAGSPHAEINAINSVKDP 62
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
R +T YV+LEPC+H+G++PPCA + E G ++VV+ + D +V+G+G Q L GI
Sbjct: 63 SLLRDSTIYVSLEPCAHFGKTPPCADKLAEIGFKKVVIGILDSHDKVNGKGKQILENAGI 122
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + Q +KR I LK A S D I I ++K V
Sbjct: 123 EVVTDVLRNECFDLNKRFFAFQEKKRPFILLKWAESADRFIDKDFG-PTQIGNALTKQYV 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H LR++ AILVG T L D+P LT R +P+RI++D K+ I +
Sbjct: 182 HTLRSEEHAILVGTNTALTDNPSLTVREIS--GRNPVRILVDFDLKVPTSFNIYNSEAPT 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
V +N I L++ L + + S++VEGG FI
Sbjct: 240 LVFNGVKNSVE-------GHISFIKISKDNFPATLMSQLYEKQIQSVIVEGGRFTLQQFI 292
Query: 304 NSRLVDSIILYRSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ L D ++ R++ + P E + F +++ +
Sbjct: 293 DTDLWDETVIIRNENINLTNGTKAPDFTAEASETQIFRDNTVEFYKN 339
>gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)]
gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24]
Length = 381
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/375 (31%), Positives = 173/375 (46%), Gaps = 29/375 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + VG T +NP+V C+++ +G + GV G PHAEV AL A RG
Sbjct: 1 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + +V +
Sbjct: 61 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ +E + L +LT R +T K A + D A + I+ S+ H LRA+
Sbjct: 121 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A V+
Sbjct: 181 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGAAPTLVVTDP 239
Query: 250 ENDDPVLALAFRKKNINIIY-----------------------CDCRDLKKLLTILVGRG 286
+ N I LL L GRG
Sbjct: 240 ATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAALDGRG 299
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVR 342
V S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ P + F
Sbjct: 300 VRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHRFRITS 359
Query: 343 RDYFGSDVCLEYIGK 357
D G D+ +E
Sbjct: 360 VDRIGPDLRIELRPP 374
>gi|256787680|ref|ZP_05526111.1| riboflavin-specific deaminase [Streptomyces lividans TK24]
Length = 405
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 119/375 (31%), Positives = 173/375 (46%), Gaps = 29/375 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + VG T +NP+V C+++ +G + GV G PHAEV AL A RG
Sbjct: 25 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 84
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + +V +
Sbjct: 85 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 144
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ +E + L +LT R +T K A + D A + I+ S+ H LRA+
Sbjct: 145 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 204
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A V+
Sbjct: 205 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGAAPTLVVTDP 263
Query: 250 ENDDPVLALAFRKKNINIIY-----------------------CDCRDLKKLLTILVGRG 286
+ N I LL L GRG
Sbjct: 264 ATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAALDGRG 323
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVR 342
V S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ P + F
Sbjct: 324 VRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHRFRITS 383
Query: 343 RDYFGSDVCLEYIGK 357
D G D+ +E
Sbjct: 384 VDRIGPDLRIELRPP 398
>gi|306833066|ref|ZP_07466197.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
700338]
gi|304424775|gb|EFM27910.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC
700338]
Length = 351
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 106/352 (30%), Positives = 157/352 (44%), Gaps = 12/352 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63
+M+ A+ ++ TNP V +IVK+G VI RG G HAE A+ E
Sbjct: 1 MHENYMAQAIAAAKQGFRQIYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEV 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +G
Sbjct: 61 PEELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E+E + Y KR ++ LK AVS D I +T +
Sbjct: 121 IEVVTQVLENEARALNPHYNFYHEYKRPYVVLKQAVSLDGKI-AVLGKRTALTNDETNRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH R AILVG TVL D+P+L L + + + +
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPQLLGAGTSLYPPVRVI------LDETGRIFDKRELQI 233
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+A +I +I + +L L + + S+ VEGGA V +F
Sbjct: 234 FKNQSAPVYIFSRRQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCL 352
+ S L D +I Y + VIG G + +E+ + G+++ L
Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAMASSRQVEQVYDLQDFSVQTIGTNLRL 345
>gi|332878860|ref|ZP_08446575.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683211|gb|EGJ56093.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 350
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 113/358 (31%), Positives = 171/358 (47%), Gaps = 16/358 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++ ++ ++ +G T NP V +IV + VIG G G HAEV+A+ ++
Sbjct: 3 DQQYIHRCIQLAQNGLGTTYPNPVVGSVIVYNDRVIGEGWHVRAGEAHAEVRAIASVKDK 62
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+T YV+LEPCSHYG++PPCA II I RVV+ DP +V+GRG+Q L + G
Sbjct: 63 QLLSESTLYVSLEPCSHYGKTPPCADLIIAHRIPRVVIGCTDPFAKVAGRGIQKLREAGC 122
Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISK 180
V + + E + + T +KR +I LK A ++D +I ITG ++
Sbjct: 123 EVVVGVCQEECEALNKRFFTFHQKKRPYIFLKWAETRDGLIAPLHKQEIAPQWITGAYAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VHLLR+ AILVG GTV AD+P L+ R SP+R+I+DP D +
Sbjct: 183 QYVHLLRSTEAAILVGAGTVWADNPSLSTR--SWYGKSPLRVIIDPRLSTRKDFNVWND- 239
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
P + + + D + ++ + I L +L +L R V SL+VEGGA
Sbjct: 240 -EVPTLFIADRDYKGVRHFGQRTEVACIDFGGEVLPQLCKVLYEREVQSLIVEGGAHTLQ 298
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
FI + L D +++R V G+ +P F D + I
Sbjct: 299 QFIKADLWDEALVFRGDTVF-TNGLKAPQLSHAC-----LHSVASFPPDFLMTMINDK 350
>gi|149372326|ref|ZP_01891514.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
SCB49]
gi|149354716|gb|EDM43279.1| riboflavin biosynthesis protein ribD [unidentified eubacterium
SCB49]
Length = 340
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 21/355 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M ++ ++ +G T NP V +IV D +IG G G PHAEV A+ +E
Sbjct: 1 MFRCIQLAKKGLGYTYPNPLVGSVIVVDDKIIGEGWHLEAGKPHAEVNAINSVTDEKLLE 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPCSH+G++PPCA I+ GI+ +V+ DP+ +V+G+G+ L Q G V
Sbjct: 61 KATIYVSLEPCSHFGKTPPCADLIVTKGIKNIVIGSTDPNPKVAGKGIIKLMQAGCKVKV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVH 184
+ + E + T Q +KR +I LK A +QD I IT ++ +VH
Sbjct: 121 GVLQKECDALNKRFFTFQTKKRPYIFLKWAETQDGFIAPKTRNEQAPVWITNKYARQRVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA AIL+G T LAD+P LT R + +P+R+++D K+ + I
Sbjct: 181 QMRAAEQAILIGTNTALADNPSLTTR--DVIGSNPIRVLIDRQLKVPKTAAIFDEQAKTI 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
VI ++ + + + ++ +L + S++VEGGA +FI+
Sbjct: 239 VITEKSAEN------TETVHFECVDFNKPLAHQICEVLFKHEIESVIVEGGAQTLQTFIS 292
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
L D +Y +G + + N SD+ +L
Sbjct: 293 ENLWDEAHIY-------KGAVSFTEGTKAPKINGTIFSETTIKSDILTVLKKDSL 340
>gi|332299428|ref|YP_004441349.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
DSM 20707]
gi|332176491|gb|AEE12181.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica
DSM 20707]
Length = 343
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 13/336 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A
Sbjct: 7 STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66
Query: 62 EAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
EE R AT YV+LEPC+HYG++PPCA+ + + RVV+ + DP +V GRG+
Sbjct: 67 SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAKLRPARVVIAMLDPFAKVDGRGVA 126
Query: 118 WLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSV 172
L + GI V + I +L Q R ++TLK A S D+ I A
Sbjct: 127 RLREAGIEVSIGCLEQEAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
+ + + VH LR+ DAILVG T DDP LT R + +L H +L
Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQP---IRLLWCHSRLPR 243
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ AP I++ + +++ LLT+L +G+ SLLV
Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPPHVSCLATTGEVRDLLTLLHSQGIESLLV 303
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
EGGA V F+++ L D I + + + + G+P+P
Sbjct: 304 EGGAQVQQRFLDAGLYDEINVEHAPVEL-HEGVPAP 338
>gi|327405290|ref|YP_004346128.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
16823]
gi|327320798|gb|AEA45290.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM
16823]
Length = 347
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 107/362 (29%), Positives = 172/362 (47%), Gaps = 26/362 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++M AL+ ++ + NP V +IV + +IG G G HAEV A+
Sbjct: 2 NLDEKYMLRALQLAKSGGISVAPNPLVGAVIVHNQQIIGEGYHQKYGEAHAEVNAVNSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ +T YVTLEPCSH+G++PPCA ++ +RVV+ DP V+GRG++ L
Sbjct: 62 DKSLLSESTIYVTLEPCSHFGKTPPCADLLVHSQFKRVVIAQIDPFSEVAGRGIEKLKNA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPITG 176
GI VD + ESE K ++T +KR ITLK A ++D I G I+
Sbjct: 122 GIQVDCGILESEAKELNKRFITFHTKKRPFITLKWAQTKDGFIDRDRSQDKEIGINWISQ 181
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H +R+ AILVG T+ D+P LT R+ +P+RII+DP+ K ++ I
Sbjct: 182 PETQVITHQMRSTEQAILVGWKTIQNDNPSLTTRVFT--GPNPIRIIIDPNLKAPKNATI 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
L V +I + + D K +L L + S+++EGGA
Sbjct: 240 FTDGLKTVVFN--------KTEEKTINSIQYVRLESIDSKSILRKLHELQINSVIIEGGA 291
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FI+S D ++ ++GE + ++ L + + + FG D + Y
Sbjct: 292 FTLTQFIDSSNWDEALI-----IVGENQFKTGIKAPILPQ--IPYKSIQFGKD-KINYFK 343
Query: 357 KN 358
+
Sbjct: 344 NS 345
>gi|333028400|ref|ZP_08456464.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
gi|332748252|gb|EGJ78693.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071]
Length = 372
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 112/351 (31%), Positives = 162/351 (46%), Gaps = 8/351 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G T NP V C+++ G V GRG G PHAE+ AL AGE ARG
Sbjct: 18 MREAIALAARGLGRTRPNPVVGCVVLDASGEVAGRGWHQRAGGPHAEIHALRAAGERARG 77
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+
Sbjct: 78 GTALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHG 136
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E E A+LT R H+T K A S D A S IT ++ VH LRA
Sbjct: 137 LLEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRA 196
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DA+LVG GT DDP L R ++ + ++++ AP ++
Sbjct: 197 TCDAVLVGSGTARTDDPHLAVRGIPGAPQPLRVVLDTEGTAVRGGARVLDD--AAPTLVA 254
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+D P A + DL LL L R V +L+EGGA +A +F+ +
Sbjct: 255 LADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGVLLEGGARLAGAFVAAGYT 314
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
D ++ Y + +++G G + + G D+ + +
Sbjct: 315 DRVVGYLAPVLLGAGPAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 365
>gi|313203842|ref|YP_004042499.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-aminO-6-(5-phosphoribosylamino)uracil reductase
[Paludibacter propionicigenes WB4]
gi|312443158|gb|ADQ79514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Paludibacter propionicigenes WB4]
Length = 360
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 16/329 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65
+M L+ + VG + NP V ++V + +IG G G HAE A+ E
Sbjct: 20 ELYMHRCLQLAELGVGYVAPNPMVGAVLVCNDKIIGEGYHHRYGEAHAEPNAINSVKEVE 79
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T YV+LEPCSHYG++PPCA I+ GI RVV+ DP+ +V+G+G+ L G+
Sbjct: 80 LLGQSTLYVSLEPCSHYGKTPPCADLIVSSGIPRVVIGTLDPNPKVAGKGVAKLRNAGVE 139
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISK 180
V + E E + + Q ++R ++ LK A ++D + + I+ I++
Sbjct: 140 VIVGVLEEECRELNKRFFIFQEQRRPYVLLKWAQTRDGFMDRVRTDVSEPPLQISNNITR 199
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H +RA++ +ILVG TVL D+P LT R + P+RI +D ++ + ++ +
Sbjct: 200 QLTHKMRAENQSILVGANTVLLDNPSLTVRNWSGRS--PVRIAIDRQRRIPDNFNLLDGS 257
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
L V + ++ I D ++ +LT L R + S+LVEGG + +
Sbjct: 258 LQTIVFTEKDVENRPRIE------FVKINFDSNSVETILTELYKRNIHSVLVEGGPTILN 311
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329
SFI++ D + + + I G+ +P
Sbjct: 312 SFIDAGCWDEANIEIAPVRI-NEGVAAPF 339
>gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Polaromonas sp. JS666]
gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp.
JS666]
Length = 373
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/358 (30%), Positives = 163/358 (45%), Gaps = 16/358 (4%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
F+ AL +R VG + NP V C+I D V+G G T G HAE+ AL +A
Sbjct: 7 FIDQALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARR 66
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
GATAYVTLEPCSH+GR+ PC +I GI++VV + DP+ VSG+G + + GI
Sbjct: 67 HVVAGATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGI 126
Query: 125 IVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + E + + +R + K + +KIA S D + S IT ++
Sbjct: 127 EVVVGPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDG 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA++ AIL GIGT+L D+P L R P +++D +L L++ +
Sbjct: 187 HAWRARASAILTGIGTILEDNPRLDVRSVAT-PRQPHLVVVDSRLQLPLNANLFTGNRTI 245
Query: 244 PVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
V +D AL D DL +L L R V + VE G
Sbjct: 246 YVYAAVPDDAKKTALEERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAGHK 305
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
+ S + LVD ++Y + ++G G + PL++ + G D+ +
Sbjct: 306 LNGSLLREELVDEFLVYLAPKLLGSGNGMASFGPLQQLSDAVPLEFLSAQPVGVDLRV 363
>gi|187735315|ref|YP_001877427.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
BAA-835]
gi|187425367|gb|ACD04646.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC
BAA-835]
Length = 356
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 103/367 (28%), Positives = 161/367 (43%), Gaps = 29/367 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62
+ D +M+ A++ + +GLTS NP V +IV + VIG G G PHAE +A+ +
Sbjct: 10 NQDDCWMNMAIKLASNGIGLTSPNPCVGAVIVHENQVIGSGFHKKAGLPHAEREAIADGV 69
Query: 63 AGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A A +T YVTLEPCS G++PPC I++ +RVV +DP+ + G L
Sbjct: 70 ANGNAPLFADSTLYVTLEPCSTSGKTPPCTDAILKYRFKRVVYGSEDPNPKHRGAAADIL 129
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
Q GI V R + E E + + +E R + K A+S D I + S +T
Sbjct: 130 EQAGIKVTRGVLEKECDRLIRRFRVNMLEGRPWVIAKSAMSLDGRISRSPERSQWLTNEK 189
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S++ VH LRA+ DA+L G TV D+P LT R S
Sbjct: 190 SRSFVHTLRAECDAVLTGGNTVRLDNPSLTIRKPDRPVSPLKEQPWRIILTHDASSIPAD 249
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ L + ++ L+ L + + + ++L+E G +
Sbjct: 250 SICLT---------------DEFRDRTLVVENVFSYLELLKKLYNDKKIGTILLEAGGCL 294
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
F+ + LVD + + + I+IG G P P E E + + FG DVC+
Sbjct: 295 VREFLKAGLVDEWVGFYAPIIIGGGADGVAPGPFLEH--EAHLEQPVVNIFGGDVCIRG- 351
Query: 356 GKNLCLQ 362
++C +
Sbjct: 352 --DICYR 356
>gi|256839100|ref|ZP_05544610.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
gi|256740019|gb|EEU53343.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13]
Length = 359
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 162/353 (45%), Gaps = 16/353 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIG----MAGCGSVPIT 175
+ G+ V + E L+ Q + R +I LK A S+D I ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLNGFSRTLIFTEKEVENR------ENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
A + +SF+ + + D + + + + G+ +P+ +
Sbjct: 293 AQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLGKEAVSGISRRSVMSIKN 344
>gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CC9605]
gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605]
Length = 349
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 160/353 (45%), Gaps = 13/353 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + G TS NP V +++ +G ++G G A G HAEV AL +AG+ A+G
Sbjct: 1 MRRALALAALAEGHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L Q G+ V
Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEVISG 120
Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E + A+L R R LK A+S D + S I+G + + R
Sbjct: 121 VLREEARQQNRAFLHRVRTGRPFGILKWAMSLDGRTALPNGASQWISG--PPARDWVHRL 178
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+S V +G + G + P+R++L L +++ TA+ ++
Sbjct: 179 RSGMDAVVVGGGTVRGDDPLLTSRGRRSPEPLRVVLSRSLDLPDQAQLWDTAVAPTLVAH 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
DP + + + + ++L+ L RG +L E G +A + I V
Sbjct: 239 GPEADPQRLPS----GPDELVLSACEPEQLMEALAQRGCNQVLWECGPELAAAVIRQGCV 294
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIG 356
I + ++G +PL + + + + + G+D L +
Sbjct: 295 QEIAAVVAPKLMGGMPARTPLGDLHFSAMDQVLQGQWHQSEPVGNDWLLRWRN 347
>gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 393
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 102/376 (27%), Positives = 165/376 (43%), Gaps = 29/376 (7%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ DA +M + +R VG TS NP V C+IVKDG ++GRG G PHAEV AL EA
Sbjct: 25 TEVDAFYMRMCVDLARQAVGKTSPNPIVGCVIVKDGRIVGRGFHPKAGEPHAEVFALREA 84
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A+GATAYV+LEPC+HYGR+PPC+Q +++ ++RVVV V DP+ +V G+G++ L G
Sbjct: 85 GPLAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAG 144
Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V +E + + ++ R +TL+ ++S D S G SK
Sbjct: 145 IEVVVGVEETLCLKANESFMHRMATGRPFVTLRYSMSMDGGFLGNMGLSNAQGGLYSKLL 204
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
V + + P+R+IL L ++SK+ T+
Sbjct: 205 QENDAVVITDAAV--------LDDPDLLSSEPGAKQPLRVILARSLDLPVESKVFDTSYA 256
Query: 243 APVIIVTENDDPVLALAFRKKNINII-----------YCDCRDLKKLLTILVGRGVTSLL 291
+++ + +I + L+ +L++ G TS+L
Sbjct: 257 KTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDLTLENVLSVCYQLGATSVL 316
Query: 292 VEGGAAV---AHSFINSRLVDS-----IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
++ V +F+ + +D +++ + I +GE V
Sbjct: 317 LDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGENRTEPCFRMDSDLVKLERVSS 376
Query: 344 DYFGSDVCLE-YIGKN 358
G DV +E Y +
Sbjct: 377 HMVGQDVVIEGYFPER 392
>gi|237725969|ref|ZP_04556450.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D4]
gi|229435777|gb|EEO45854.1| riboflavin biosynthesis protein ribD [Bacteroides dorei 5_1_36/D4]
Length = 355
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 106/350 (30%), Positives = 173/350 (49%), Gaps = 17/350 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E
Sbjct: 4 DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + GI
Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKN 181
V + E E + + ++T KR +ITLK A S D I + + ++ ++
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ +
Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFSGRI 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V P + L +++ +L + + SLLVEGG+ + S
Sbjct: 242 KTFVFTRKSPHQPNTLTE-----YISLDFSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
FI+S L D + + + + + +E ++K + + + YFG ++
Sbjct: 297 FIDSSLWDEAFIEKVPLCL-----KNGIEAPSIQKKYFKLNKIYFGREIM 341
>gi|159044799|ref|YP_001533593.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
gi|157912559|gb|ABV93992.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 120/364 (32%), Positives = 180/364 (49%), Gaps = 13/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D R+M AL R +G + NP+V C++V +G V+GRG T GG PHAEV AL +A
Sbjct: 2 SDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQA 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G ARGATAYVTLEPC+H+G++ PC +I G+ RVV ++DPD RV+G+G L G
Sbjct: 62 GAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAAG 121
Query: 124 IIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + + +L R R +TLK+A++ D I A S ITG ++
Sbjct: 122 VAVTEGVGRAAAREDQLGFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEARRY 181
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LRA+ DA+L+G GT DDP LT R G P+R++ + + S++ ++
Sbjct: 182 GHALRARHDAVLIGAGTARTDDPTLTVRGVG-VVRQPVRVVASRDLDVPIPSRLSQSVTA 240
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGGA 296
+ + + R + + + + LL L RG+T + EGG
Sbjct: 241 DAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCEGGG 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
A A + + VD + ++ + VIG G+P + F + G DV
Sbjct: 301 AFAAGLLRAGCVDRLAVFSAGCVIGADGLPGLGDLGVNLLADAPRFRRLGVRQVGGDVLT 360
Query: 353 EYIG 356
E+
Sbjct: 361 EWAR 364
>gi|212695385|ref|ZP_03303513.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
gi|237711578|ref|ZP_04542059.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
gi|265753006|ref|ZP_06088575.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
gi|212662020|gb|EEB22594.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855]
gi|229454273|gb|EEO59994.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA]
gi|263236192|gb|EEZ21687.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA]
Length = 355
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 106/350 (30%), Positives = 173/350 (49%), Gaps = 17/350 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E
Sbjct: 4 DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + GI
Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKN 181
V + E E + + ++T KR +ITLK A S D I + + ++ ++
Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ +
Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFSGRI 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V P + L +++ +L + + SLLVEGG+ + S
Sbjct: 242 KTFVFTRKSPHQPNTLTE-----YISLDFSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
FI+S L D + + + + + +E ++K + + + YFG ++
Sbjct: 297 FIDSSLWDEAFIEKVPLCL-----KNGIEAPSIQKKYFKLNKIYFGREIM 341
>gi|332558836|ref|ZP_08413158.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
gi|332276548|gb|EGJ21863.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N]
Length = 356
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 131/356 (36%), Positives = 191/356 (53%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA
Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAVGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E ++ +L R E +TLK+A + D I A S ITG +++ VH +R +
Sbjct: 121 LEAEARVAHAGFLKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG+GT +ADDP+L+ R + H P+RI++D + + DS++ +TA PV +
Sbjct: 181 HDAVMVGVGTAIADDPDLSVR-DLGSGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239
Query: 250 ENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
P A A + D + + +L L G+T + EGGA + + +
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D ++ + + +IGE G + L + D G D+ +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARWQR 355
>gi|227514654|ref|ZP_03944703.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Lactobacillus fermentum ATCC 14931]
gi|227086963|gb|EEI22275.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Lactobacillus fermentum ATCC 14931]
Length = 345
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 103/350 (29%), Positives = 149/350 (42%), Gaps = 7/350 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARG 69
M AL + T NP V +IVKDG ++ G G HAE A+ + + E+ G
Sbjct: 1 MQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L GI V+
Sbjct: 61 ATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
++ + + Y ++R IT K A+S D + A + IT ++ VH RA
Sbjct: 121 LLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRLVHQERA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
AI+VG GTVLADDP L C L + + D + A ++
Sbjct: 181 DYHAIVVGAGTVLADDPRLLCETPQLFPPVRVILDRAGRLLDYQDRFVFTDASAPTWLVT 240
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
T ++ + D +LL + SL VEGG AV + V
Sbjct: 241 TNRA---ATKVDWPAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVPV 297
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ +I Y +IG+ G+ F G D+ ++
Sbjct: 298 NQLITYLDPQIIGDQGLAGAQFPVGTA--FTHRTVTQLGDDIRIDERNDE 345
>gi|304383732|ref|ZP_07366191.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
gi|304335256|gb|EFM01527.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973]
Length = 315
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 98/363 (26%), Positives = 153/363 (42%), Gaps = 58/363 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D ++M L+ + NP V +IV + +IG G G HAEV A
Sbjct: 1 MSQATTDEKYMRRCLQLAECGRENAKPNPMVGAVIVVENRIIGEGYHVRYGEAHAEVNAF 60
Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+ AT YV+LEPC+H G++PPC + IIE G+ RVVV DP +V GRG+
Sbjct: 61 ASICPKDAALLPSATLYVSLEPCAHQGKTPPCTRLIIEKGVGRVVVGCIDPFAKVQGRGI 120
Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+ L + GI V ++E+E ++ Q R +I LK A + + + ++ ++
Sbjct: 121 RMLQEAGIEVTLGVLEAECLALNRRFIVCQHHCRPYIILKWAQTTNGFLDDNN-HAMQLS 179
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
++ VH LRA DAIL+G T + P LT R + + +
Sbjct: 180 TPFTRMLVHQLRADVDAILIGRHTDEREHPALTVRDWSGKNPRRIVLT------------ 227
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ +L+ L GV SLLVEGG
Sbjct: 228 -----------------------------------HKLNIHQLMNDLYTEGVQSLLVEGG 252
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A SF+N+ L D I + + +V+ G +PL KN + ++ YI
Sbjct: 253 ATTHQSFLNAGLWDEIRVETAPVVVTNGTKAAPL-----PKNIQIANTKEYDGNLITSYI 307
Query: 356 GKN 358
+
Sbjct: 308 KTD 310
>gi|288957859|ref|YP_003448200.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
B510]
gi|288910167|dbj|BAI71656.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp.
B510]
Length = 376
Score = 177 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 148/369 (40%), Positives = 193/369 (52%), Gaps = 14/369 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P D R M AAL + +G T NP+V C++V+DG VIGRG T GG PHAE +AL
Sbjct: 5 PDPETDLRHMRAALALAGRGLGRTWPNPAVGCVLVRDGAVIGRGWTQPGGRPHAETEALA 64
Query: 62 EAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A A GATAYVTLEPC+HYGR+PPCA ++E + RVVV DPD RV+G GL
Sbjct: 65 RARACSGGAEGATAYVTLEPCNHYGRTPPCALALVEARVARVVVACQDPDPRVAGGGLAR 124
Query: 119 LSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI V + + L+ + R R +T KIA + D I A S ITG
Sbjct: 125 LRDAGIAVTTGLCEAEALALNEGFFNRITRNRPLVTCKIASTLDGRIATATGESQWITGP 184
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ H LRA DAILVGIGT LADDPELTCRL GL++ SP+R+++D +L +K+
Sbjct: 185 TARAWGHRLRAGHDAILVGIGTALADDPELTCRLPGLEDRSPVRVVMDSGLRLPATAKLA 244
Query: 238 KTALLAPVIIVTENDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
A P +VT + L D LT L RG+T LL
Sbjct: 245 TGARRIPTWVVTGPSPDPMRAGALAALGVEIVPAAADGDGRVDPAAALTALAARGITRLL 304
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347
VEGGAAVA + + + LVD + +R+ +IG G+P+ + F G
Sbjct: 305 VEGGAAVAGALLGAGLVDRLEWFRAASLIGGDGLPAVAGFGVGALAAMARFERTSVRDAG 364
Query: 348 SDVCLEYIG 356
+D+ Y
Sbjct: 365 ADLAESYRR 373
>gi|300775167|ref|ZP_07085029.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
35910]
gi|300505907|gb|EFK37043.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC
35910]
Length = 341
Score = 177 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 98/356 (27%), Positives = 156/356 (43%), Gaps = 19/356 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D ++ + ++ +G T NP V +IV +G +IG G G HAE+ A+
Sbjct: 2 NNDELYIKRCIELAQKALGKTYPNPLVGSVIVHNGEIIGEGYHHKAGENHAEINAINSVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ +T YV+LEPC+HYG++PPCA I E G ++VV+ D +V+G+G + + +
Sbjct: 62 NKDLIPESTIYVSLEPCAHYGKTPPCALKIRELGFKKVVIGAMDSHDKVNGKGKKIIQEA 121
Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V ++E E + T +KR +I LK A S D + + ++ +
Sbjct: 122 GIEAVSGILEKECIELNKRFFTYHEKKRPYIILKWAESGDGFLDKDFKPTA-VSNTLVNQ 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA AILVG T L D+P LT R +P+RI++D K+ I
Sbjct: 181 FVHQLRADEHAILVGTQTALNDNPSLTVRNAE--GVNPVRILIDFDLKVPAHFNIYNNDA 238
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V+ + I L +L+ L + S+++EGG
Sbjct: 239 KTLVLNSVK-------EGIENHIQFIKINKDDFLPELMKALYKEQIQSIIIEGGRFTLQQ 291
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
FI++ L D I+ I + E N+ R + F + Y K
Sbjct: 292 FIDANLWDEAIV------IKNENLKLENGTKAPEFNYTADRLENFRDNTVSFYRQK 341
>gi|56551372|ref|YP_162211.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56542946|gb|AAV89100.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 323
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 109/363 (30%), Positives = 166/363 (45%), Gaps = 48/363 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A
Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
L + + +GAT YVTLEPC+H P C+ ++ RVV+ DPD R +G+G+
Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDPRTNGQGISK 119
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ GI V+ + + + + + R ++TLK+A S D I + S ITG
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ HL R +S+ I+VG T+ D P L RL GL + + + +
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGD------------RSPKKAVLG 227
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + I + E D + A +L+EGGA
Sbjct: 228 HGEIPSGWIGLREPTDIIKTTAD----------------------------HVLIEGGAK 259
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK---NFMCVRRDYFGSDVCLE 353
A +F+ LVD I+LYR+ I+IG+G + + +L + + R G+D
Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIGKGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLEA 319
Query: 354 YIG 356
Y+
Sbjct: 320 YLR 322
>gi|260753016|ref|YP_003225909.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552379|gb|ACV75325.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 323
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 108/363 (29%), Positives = 165/363 (45%), Gaps = 48/363 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A
Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
L + + +GAT YVTLEPC+H P C+ ++ RVV+ DPD R +G+G+
Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDHRTNGQGISK 119
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ GI V+ + + + + + R ++TLK+A S D I + S ITG
Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ HL R +S+ I+VG T+ D P L RL L + + + +
Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQSLGD------------RSPKKAVLG 227
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + I + E D + A +L+EGGA
Sbjct: 228 HGEIPSGWIGLREPTDIIKTTAD----------------------------HVLIEGGAK 259
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK---NFMCVRRDYFGSDVCLE 353
A +F+ LVD I+LYR+ I+IG+G + + +L + + R G+D
Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIGKGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLEA 319
Query: 354 YIG 356
Y+
Sbjct: 320 YLR 322
>gi|88856442|ref|ZP_01131100.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
gi|88814309|gb|EAR24173.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1]
Length = 345
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 104/363 (28%), Positives = 163/363 (44%), Gaps = 31/363 (8%)
Query: 1 MPVSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAE 56
M + M L + +T NP V C++V D G ++ G G PHAE
Sbjct: 1 MTTPEQHAQLEKLMLHGLSLASRG-PITGGNPQVGCVLVNDAGEIVAEGWHHGAGTPHAE 59
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V AL + G A G TA VTLEPC+H+GR+ PC++ +I+ G+ RVV V DP VR G
Sbjct: 60 VDALTKLGGNAAGLTAVVTLEPCNHHGRTGPCSEALIDAGVSRVVYAVSDPGVRSGGGSQ 119
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
+ ++ +++ + FLH++LT +R H+T+K A + D A S ITG
Sbjct: 120 RLRDAGVEVIGGASQADAEEFLHSWLTATRLQRPHVTVKWASTLDGRAAAADGTSQWITG 179
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ VH RA++DAI+VG GTVLADDP LT R + + + + +
Sbjct: 180 TAARQHVHEQRARADAIVVGTGTVLADDPSLTARGDAGELLEWQPQPVVLGRREIPAAAQ 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++ + D DL L+ L G+ + VEGG
Sbjct: 240 LRHHPK-----------------------QLRQFDGGDLNAALSALFEAGIRRVFVEGGP 276
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A +FI + L D +++Y + ++G + + K+ G+DV +
Sbjct: 277 TIASAFIAAGLADELLIYLAPKLLGGPKVALGELGVATMAEAKDLSITELRPLGNDVLIV 336
Query: 354 YIG 356
Sbjct: 337 ARP 339
>gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
43553]
gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
43553]
Length = 383
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 104/371 (28%), Positives = 169/371 (45%), Gaps = 15/371 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
S D +M AL + + T+ NP V C+IV+DG ++G G T G PHAE++AL +A
Sbjct: 7 SDDIFWMRRALALAESVLYTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALRDAE 66
Query: 65 ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL L
Sbjct: 67 SRQEAVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLARLRA 126
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + + + L+A ++ + + +K+A S D + S ITG ++
Sbjct: 127 AGIQVTTGVCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGPEAR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H RA+S +L G+GT+L DDP L R R + + + +
Sbjct: 187 ADGHHWRARSCVVLTGMGTILKDDPLLNVRGVQTPRQP--RKAVVDGLFVIPEDARLFDG 244
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGGAA 297
V E+ + LA + + + L + + VE GA
Sbjct: 245 AQVIVFTAREDAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVHVEAGAG 304
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
++ + + + VD ++LY + +++G+ LE + + + G+DV L
Sbjct: 305 LSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDAARRYEFIDSTLVGADVRLRA 364
Query: 355 IGK---NLCLQ 362
+ N L+
Sbjct: 365 RVQGTWNELLR 375
>gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
Length = 366
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 110/327 (33%), Positives = 164/327 (50%), Gaps = 19/327 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA++
Sbjct: 7 SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G E RGAT YVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ
Sbjct: 67 QAWERGHEVRGATTYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126
Query: 119 LSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L GI VD E + +++R V + LK+A S D + + S IT
Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSE 186
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ H RA++ A+L G+GTV ADDP+L R P+RI++D + ++++
Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVIDSRLECPPTARLL 245
Query: 238 KTALLAPVIIV--------------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
++A I+ +L L + DL+ L+ +L
Sbjct: 246 QSADSPLWIVHALSPEQAAPRLAALRSAAIALLDLQDIALPADPDKPGKTDLRALMQVLG 305
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDS 310
RG+ L E G + S + + +VD
Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDE 332
>gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera]
Length = 587
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 19/364 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D+ + A + G TS +P+ C+I G V+G G G AEVQA+E AG
Sbjct: 22 ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E RGATAY+ +EP +G + + R VV P + L+ + +G+
Sbjct: 82 ELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRXVVGI-RHPLQHLRSHALRAMRSEGL 140
Query: 125 IVD-----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
VD I + R + LK A++ D I + +
Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
I+ S+ +V LR +SDAI+VG TV D+P+LT R G H P+RI++ L
Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPQLTARHGG--GHVPIRIVMSRTLNLPEV 258
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + + + +++ K + ++ D + + ++ RG S+L E
Sbjct: 259 ANLWDVSSVPTIVVTQRXARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGS 348
G +A S I+S ++ + + + +IG P+P+ E + + + G
Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLIDFSYEQIGP 378
Query: 349 DVCL 352
D+ +
Sbjct: 379 DMLI 382
>gi|298209105|ref|YP_003717284.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
HTCC2559]
gi|83849032|gb|EAP86901.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus
HTCC2559]
Length = 333
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 99/358 (27%), Positives = 151/358 (42%), Gaps = 33/358 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ ++ L+ ++ +G T NP V +IV D +IG G G HAEV A+
Sbjct: 2 NSHKTYIKRCLQLAKKGLGTTYPNPMVGSVIVYDNKIIGEGWHQIAGLAHAEVNAINAVK 61
Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ + +T YV+LEPCSHYG++PPCA II I VV+ DP +V G+G++ L
Sbjct: 62 DKSLLKKSTIYVSLEPCSHYGKTPPCADLIIANNIPNVVIGTVDPFAKVKGQGIKKLLDA 121
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178
G + + E E + + T KR +I LK A S D + IT +
Sbjct: 122 GCKITVGVLEDECQELNKRFFTFHNSKRPYIILKWAESNDAFLAPKTKHKQQPVWITNLV 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ VH RA+ AILVG TV D+P LT R + + I SL
Sbjct: 182 SRQLVHKWRAEEQAILVGTKTVKDDNPSLTTRDWNGPNPTRLVIDRKNVLDKSL----SV 237
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
A ++ +EN L + + S++VEGGA
Sbjct: 238 LNDKAETVVFSENTSNFNNLPQH----------------ICEYCHTNNLQSIIVEGGAQT 281
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FIN+ L D +++ ++ G +PL G + ++ +D Y
Sbjct: 282 LQHFINANLWDEARVFKGDVMF-YEGTKAPLITGS------IIHKETLQNDTLTIYTN 332
>gi|261749554|ref|YP_003257240.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497647|gb|ACX84097.1| riboflavin biosynthesis protein RibD [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 347
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 105/344 (30%), Positives = 162/344 (47%), Gaps = 16/344 (4%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EA 67
FM A++ ++ +GLTS NP V CLI ++G+++ G G HAEV A+
Sbjct: 7 FMYRAIQLAKNGLGLTSPNPMVGCLIERNGLILSEGWHYKVGMDHAEVNAINRVENTSLL 66
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+T YVTLEPC H+G++PPC II+ I RVV+ + DP +V+G G+Q L + GI V
Sbjct: 67 TDSTLYVTLEPCVHFGKTPPCVDLIIKSKIPRVVIGIQDPCHKVNGLGIQKLRENGIEVI 126
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISKNQ 182
+ + +I + T +KR +I LK A S D + I+G S+
Sbjct: 127 ENVLRDQCRILNKRFFTFYEKKRPYIILKWAQSDDGFMDSLKRNEKKKPSWISGIYSRQL 186
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H R++ D+ILVG TV D+P+L R P+RI +D +S I+
Sbjct: 187 SHKWRSEEDSILVGRKTVFNDNPKLDVR--EWFGSDPIRIFMDRKLSISASYFILDGTKK 244
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + I D +K + L + + SL+VEGG SF
Sbjct: 245 TIVF------TEKKKENQKNTEFVQISFDKEIIKNIFNYLYQKNILSLIVEGGRMTLESF 298
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
I + + D ++ I + + G+ +P+ +G + KN RD
Sbjct: 299 IKANIWDESRIFICNIFL-KDGLKAPVIDGRVIKNMYIGERDKL 341
>gi|227542162|ref|ZP_03972211.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181991|gb|EEI62963.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 324
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 114/358 (31%), Positives = 152/358 (42%), Gaps = 38/358 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AA+ VG NP+V C +VK+G VI G T G PHAE+ AL AGE+ARGA
Sbjct: 1 MDAAITAGEEAVGRARPNPAVGCALVKNGRVIATGSTQRVGGPHAEIMALRAAGEDARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPC+H GR+ PC+ ++E GI VV D + G +L G+ V+ +
Sbjct: 61 TAYVTLEPCNHTGRTGPCSLALVEAGIATVVYLTPDTSTPEAAGGGDYLKSHGVEVEYLP 120
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ G L +L Q R T+K+A + D S ITG ++ H R++
Sbjct: 121 VAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGETARAYAHRDRSRR 178
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DAILVG GT LAD+P LT R +
Sbjct: 179 DAILVGTGTALADNPSLTARREDGSLYENQP----------------------------- 209
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
D ++ + +Y L LV +LVEGG V + + LVD+
Sbjct: 210 --DKIVFGSRPVPRDYHLYETGFIQVDTLEELVQLPYNDILVEGGPGVLSTLFTNDLVDT 267
Query: 311 IILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
I Y + V+G GIP K F G DV + CLQ L
Sbjct: 268 IHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVLIVLERHGSCLQGL 324
>gi|126462807|ref|YP_001043921.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC
17029]
gi|126104471|gb|ABN77149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodobacter sphaeroides ATCC 17029]
Length = 356
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 131/356 (36%), Positives = 190/356 (53%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA
Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E + +L R E +TLK+A + D I A S ITG +++ VH +R +
Sbjct: 121 LEAEARAAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHAMRMR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG+GT +ADDP+L+ R + H P+RI++D + + DS++ +TA PV +
Sbjct: 181 HDAVMVGVGTAIADDPDLSVR-DLGSGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239
Query: 250 ENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
P A A + D + + +L L G+T + EGGA + + +
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D ++ + + +IGE G + L + D G D+ +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDMVGGDLLARWQR 355
>gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
gi|156863153|gb|EDO56584.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50]
Length = 336
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 109/332 (32%), Positives = 158/332 (47%), Gaps = 14/332 (4%)
Query: 35 IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
IVKDG +IG G G HAE A E+A GA YVTLEPC HYG+ PPC IIE
Sbjct: 2 IVKDGRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAIIE 61
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHIT 153
I RV V DDP+ VSG+G Q L GI V + E L+ + K ++
Sbjct: 62 HKISRVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEECDSLNPVFFHYIVNKTPYVV 121
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
+K A++ D I S ITG ++ V R I+VG TV+ DDP LTCR G
Sbjct: 122 MKYAMTMDGKIATYSGKSKWITGEEARAHVMEQRNALTGIMVGSETVIKDDPALTCRRAG 181
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR------KKNINI 267
+P+RII D ++ +DS+I++TA P I+ T + + +
Sbjct: 182 --GRNPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQTDKKQKLIGAGVEIIETE 239
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
DL++L+ L R + +L+EGG + S + + +V + +Y + + G +
Sbjct: 240 NVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVKEVDVYIAPKIFGGSAGYT 299
Query: 328 PLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
P+ +E F FG+D+ L+Y
Sbjct: 300 PVGGMGVESPEEAYPFELGSVQRFGADIMLQY 331
>gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
A8]
gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
A8]
Length = 383
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 105/364 (28%), Positives = 173/364 (47%), Gaps = 13/364 (3%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV A
Sbjct: 2 MIPSDNDDIFWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCA 61
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L + GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL
Sbjct: 62 LRDVQARGESVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGL 121
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPIT 175
L GI V + + ++A ++ + + LK+A S D + S IT
Sbjct: 122 ARLRLAGIEVTTGVCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWIT 181
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G ++ H RA++ +L G+GTVL DDP+L R P + ++D F++ D++
Sbjct: 182 GPEARADGHRWRARACVVLTGMGTVLKDDPQLNVRGVD-TPRQPRKAVVDGRFEIPEDAR 240
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---TILVGRGVTSLLV 292
+ + E+ L + + ++ + L L + V
Sbjct: 241 -LFDGAEVIIFTAREDAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEVHV 299
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSD 349
E GA ++ + + + VD ++LY + +++G+ LE + + + G+D
Sbjct: 300 EAGAGLSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDGARRYEFIETAPVGAD 359
Query: 350 VCLE 353
+ +
Sbjct: 360 LRVR 363
>gi|326800779|ref|YP_004318598.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
gi|326551543|gb|ADZ79928.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21]
Length = 348
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 103/363 (28%), Positives = 158/363 (43%), Gaps = 26/363 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--- 61
+M L + G S NP V L+V +IG G G HAE A+
Sbjct: 2 PNHEIYMRRCLELAELGQGSVSPNPIVGALVVHHDTIIGEGWHRKYGEAHAEPNAIADVF 61
Query: 62 ----EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A + R +T YVTLEPCSH+G++PPCA +I+ +++VVV +DP +V+GRG+
Sbjct: 62 NRYPNAADLLRESTVYVTLEPCSHHGKTPPCADLLIKHQVKQVVVACNDPFEQVNGRGIA 121
Query: 118 WLSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
L + GI V + ++E E K + TR +R ++ LK A + + G ITG
Sbjct: 122 KLREAGIDVLEGVLEEEAKFVNRRFFTRVQHQRPYVILKWAETANGYFAPKGEKQQWITG 181
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ H R++ DA+LVG T L D+P+LT R +P RI++D L +
Sbjct: 182 SAAQVVNHRWRSEEDAVLVGANTALIDNPQLTVRH--WFGRNPKRIVIDKELSLPPHLHL 239
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
V +ND +N + +L L V SL+VEGG
Sbjct: 240 FDKEAETIVFNAKKNDWQDRLKLIALENFDWYLPQN-----ILYQLHLMDVQSLIVEGGI 294
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCLEY 354
+ FI + L D + R + ++G + ++ G+D Y
Sbjct: 295 KTLNLFIKAGLWDEARVLRG---------QAYWKDGLEAPRLQVIPQIKENIGNDSLTVY 345
Query: 355 IGK 357
K
Sbjct: 346 FNK 348
>gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 19/364 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D+ + A + G TS +P+ C+I G V+G G G AEVQA+E AG
Sbjct: 22 ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E RGATAY+ +EP +G +++ GI R VV + P + L+ + +G+
Sbjct: 82 ELCRGATAYLNMEPGDCHG-DRTAVSALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGL 140
Query: 125 IVD-----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
VD I + R + LK A++ D I + +
Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
I+ S+ +V LR +SDAI+VG TV D+P LT R G H P+RI++ L
Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPRLTARHGG--GHVPIRIVMSRTLNLPEV 258
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + + + +++ K + ++ D + + ++ RG S+L E
Sbjct: 259 ANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGS 348
G +A S I+S ++ + + + +IG P+P+ E + + + G
Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLIDFSYEQIGP 378
Query: 349 DVCL 352
D+ +
Sbjct: 379 DMLI 382
>gi|77463964|ref|YP_353468.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodobacter sphaeroides 2.4.1]
gi|77388382|gb|ABA79567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodobacter sphaeroides 2.4.1]
Length = 356
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 129/356 (36%), Positives = 188/356 (52%), Gaps = 11/356 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA
Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAAALGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI V +
Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120
Query: 131 ESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
HA ++V + +TLK+A + D I A S ITG +++ VH +R +
Sbjct: 121 LEAEARTAHAGFQKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA++VG+GT +ADDP+L+ R + H P+RI++D + + DS++ +TA PV +
Sbjct: 181 HDAVMVGVGTAIADDPDLSVR-DLGSGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239
Query: 250 ENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
P A A + D + + +L L G+T + EGGA + + +
Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D ++ + + +IGE G + L + D G D+ +
Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARWQR 355
>gi|120602900|ref|YP_967300.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris DP4]
gi|120563129|gb|ABM28873.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
vulgaris DP4]
Length = 377
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 98/368 (26%), Positives = 158/368 (42%), Gaps = 22/368 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
FM A+ + + NP+V ++V+DG V+ RG G PHAEV+ L +A G +
Sbjct: 8 FMREAIALAERGRWYAAPNPTVGAVLVRDGEVVARGWHTGYGKPHAEVECLRDAASKGVD 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
T VTLEPC+H+G++PPC+ I++ GI RVVV + DP+ V+ G ++L G+ V
Sbjct: 68 PAHCTLVVTLEPCNHHGKTPPCSHAIVKAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
D + + L +LT ++ ++ LK+A + D I S I+G ++ VH
Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGEEARATVHE 186
Query: 186 LRAQSDA----ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
LRA+ +LVG T+ DDP+LT R+ L PM ++ H I
Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHLPHHDALPRIFRER 246
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--------LLTILVGRGVTSLLVE 293
+I T+ A + + L+ + GV +L E
Sbjct: 247 PGQCVIWTDAIGAGTEAADTLRTSGVCVMALPLTPAGRLDLRAGLVRLRDDHGVEHVLCE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGS 348
GG +A S + + LV L+ + +IG+ + + G
Sbjct: 307 GGGKLALSLLEAGLVGEFHLHMAPKIIGDAEAAPLFDGRAPLHMDEALRLRMTGIERRGD 366
Query: 349 DVCLEYIG 356
D +
Sbjct: 367 DCIMILRP 374
>gi|150026064|ref|YP_001296890.1| riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
JIP02/86]
gi|149772605|emb|CAL44088.1| Riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum
JIP02/86]
Length = 335
Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats.
Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 35/364 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + +++ + ++ + NPSV +IV + +IG G TA G HAEV A+
Sbjct: 1 MKI---HEKYIKRCIELAKNGLPAAMPNPSVGAVIVFENKIIGEGYTAAYGGNHAEVNAI 57
Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ +T YV+LEPCSH+G++PPC II+ I VV+ D + +VSG+G++
Sbjct: 58 LSVKNKDLLAKSTIYVSLEPCSHFGKTPPCCDLIIKYKIPNVVIGTVDSNSKVSGQGIKK 117
Query: 119 LSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PI 174
L + G V + E+E + + T +KR +I LK A ++D I I
Sbjct: 118 LIEAGANVIVGILEAECRESNKRFFTFHEKKRPYIILKWAETKDQFIAPLLKNEQKPVWI 177
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T S+ H R + AILVG T + D+P L R +P RI+LD + ++ ++
Sbjct: 178 TNIYSRQLAHKWRTEEQAILVGTQTAIDDNPRLDVRDWT--GKNPTRIVLDKNNRIPKEN 235
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
I VI + I ++++ L + S+++EG
Sbjct: 236 HIFDIRQKTFVI-----------------SDKTINYSENVALQIVSFLFDNNLQSVIIEG 278
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G +FI++ L D ++ Q + G +P+ V+R +D L Y
Sbjct: 279 GRQTLQTFIDANLWDEARIFVGQELF-SSGTKAPVITS------KRVKRSKIDNDELLIY 331
Query: 355 IGKN 358
+ +
Sbjct: 332 LNHD 335
>gi|171779591|ref|ZP_02920547.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281693|gb|EDT47127.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 351
Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats.
Identities = 114/358 (31%), Positives = 168/358 (46%), Gaps = 14/358 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63
D +MS A+ ++ T TNP V +IVKD VI RG G HAE A+
Sbjct: 1 MDNYYMSQAIAEAKKGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
EE +T YVTLEPC H G+ PPC Q I+ GI++VVV DP+ V+G+GL +L ++G
Sbjct: 61 PEELVDSTLYVTLEPCHHRGKQPPCTQAILAAGIKKVVVGQLDPNPLVAGKGLAFLKEEG 120
Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V + E E + Y +R ++ LK AVS D I +T +
Sbjct: 121 IEVVTGVLEEEARGLNSHYNFYYENQRPYVVLKQAVSLDGKI-AVLGKRTALTDAETNRF 179
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-IIKTAL 241
VH R AILVG TVL D+P L + +R+ILD ++ I T
Sbjct: 180 VHDERDDYQAILVGADTVLIDNPRLLGAGTS--LYPIVRVILDEAGRVFERRDLQIFTDD 237
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
AP++I +++ L ++ +I + +L +L + S+ VEGGAAV +
Sbjct: 238 SAPILIFSKHKVTDLPS-----HVKVIDLPEFSIANILRVLYDEKIQSVYVEGGAAVHDA 292
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV--RRDYFGSDVCLEYIGK 357
F++S L D II Y + +IG G + +E+ G+ + L +
Sbjct: 293 FLDSGLWDEIISYVTPKLIGGNGKAAMSSFRLVEEVLELQDFSCQKIGNTIRLSAKRR 350
>gi|299138351|ref|ZP_07031530.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
gi|298599597|gb|EFI55756.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8]
Length = 387
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 123/382 (32%), Positives = 186/382 (48%), Gaps = 24/382 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D R + AL ++ VGL S NP+V C++V+DG+V+G G Y HAE+ AL
Sbjct: 1 MSLLPHDERHLQRALDLAQEAVGLASPNPTVGCVLVRDGVVLGEGAHHYDERDHAEIAAL 60
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
++A G +GATAYVTLEPCSH GR+ PCA +I GI R VV DP+ VSG GL
Sbjct: 61 KQAASLGHTPQGATAYVTLEPCSHQGRTGPCADALIAAGIARCVVATVDPNPLVSGGGLA 120
Query: 118 WLSQKGIIVDRMME-----SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---- 168
L GI V + A+ +R +TLK AVS D + A
Sbjct: 121 KLQAAGIEVVVADPASALAQRTRRLNDAFAHWIQHRRPFVTLKAAVSVDGKLAPAPSVRT 180
Query: 169 -CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227
+TG ++ VH LR + DAIL GIGTVLADDP LT R + S +R++LD
Sbjct: 181 ANQPHWLTGEAARADVHRLRHEVDAILTGIGTVLADDPSLTDRSGLPRRRSLLRVVLDSD 240
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILV 283
+ L+S+++++A +++ + A + ++ L L
Sbjct: 241 LRTPLNSQLVRSAGSDLLLLCSRTAPADREAALSDCGVEVLRLSGSGGHLNLRAALDTLA 300
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMC 340
R + S+L+EGG+++ S ++ LVD + LY ++ +G IP +++
Sbjct: 301 QRNIISVLIEGGSSLNGSLLHEGLVDKLTLYYAECELGLDAIPFAEGIASPYVVQEQLQR 360
Query: 341 VRRDYF----GSDVCLEYIGKN 358
++R DV + +
Sbjct: 361 MKRTSLPHGTAEDVRITGYLHD 382
>gi|114794616|pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 108/361 (29%), Positives = 168/361 (46%), Gaps = 20/361 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
F A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G
Sbjct: 15 ETFXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKG 74
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ ++ +
Sbjct: 75 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIE 134
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+++ ++E E K ++T +KR + LK A + D I S IT + +VH
Sbjct: 135 VIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITD-KLRFKVH 193
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
R A+LVG GTVL D+P+LTCRL +P+R+ILD LS +
Sbjct: 194 EXRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFEENARV 251
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + ++ +L L R + S+LVEGG+ V F++
Sbjct: 252 IVFTESEEAE-------YPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLD 304
Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362
D + + S + G+G L + + F V ++ S+ +E C +
Sbjct: 305 H--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEXRP---CSR 359
Query: 363 E 363
E
Sbjct: 360 E 360
>gi|221639820|ref|YP_002526082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5- phosphoribosylamino)uracil reductase
[Rhodobacter sphaeroides KD131]
gi|221160601|gb|ACM01581.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5- phosphoribosylamino)uracil reductase
[Rhodobacter sphaeroides KD131]
Length = 362
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 132/364 (36%), Positives = 193/364 (53%), Gaps = 13/364 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
++ D M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +
Sbjct: 1 MTDAD--HMAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQ 58
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG A GATAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L +
Sbjct: 59 AGAAALGATAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREA 118
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E+E + +L R E +TLK+A + D I A S ITG +++
Sbjct: 119 GIAVTERVLEAEARTAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARR 178
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +R + DA++VG+GT +ADDP+L+ R + H P+RI++D + + DS++ +TA
Sbjct: 179 AVHAMRMRHDAVMVGVGTAIADDPDLSVR-DLGSGHQPVRIVVDSLLRHAPDSRLGRTAR 237
Query: 242 LAPVIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PV + P A A + D + + +L L G+T + EGGA
Sbjct: 238 QVPVWLCHGPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGA 297
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+ + + + L D ++ + + +IGE G + L + D G D+
Sbjct: 298 RLGAALVRAGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTMGGDLLA 357
Query: 353 EYIG 356
+
Sbjct: 358 RWQR 361
>gi|170017119|ref|YP_001728038.1| riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
gi|169803976|gb|ACA82594.1| Riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20]
Length = 347
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 96/344 (27%), Positives = 154/344 (44%), Gaps = 21/344 (6%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSH 81
T NP V +IVK+G ++ G G HAE+ A E ++ +T YVTLEPC
Sbjct: 21 ETYENPRVGAIIVKNGQILATGYHHSFGAAHAEINAFENLRDQTDIVDSTMYVTLEPCFV 80
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
G+ CA I + G++RVVV DP+ GR + +L Q GI VD + + +I +
Sbjct: 81 TGKVGACALAIAQWGVKRVVVGSFDPNPDTHGRSVTFLRQAGIRVDVLGTEDSQILNPGF 140
Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
++ LK+A S ++ + + S IT ++ VH RA AIL+G T+L
Sbjct: 141 YHYFERHLPYVQLKLAESANHFVASSQGQSTKITDRLADIDVHKERASKSAILIGSETML 200
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
D P LT R + P+R+++D +L L
Sbjct: 201 IDQPNLTVRHVPINHPQPLRVVIDRRGRLQNKMDRATNNWLIFT-----------TNTDF 249
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
K + + L +LT L + + S++VEGG ++ +F+ + L I+Y + ++
Sbjct: 250 AKQYDNVLLMSHGLLSVLTSLASKNIQSVMVEGGPSLITAFLKANLWQEFIVYTADSILS 309
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN--LCLQE 363
E G+PS ++ F V G+ + Y+ CLQE
Sbjct: 310 EDGVPS------VQPLFNSVSSYRVGNTLKSRYLNDRSVSCLQE 347
>gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
Length = 363
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 111/348 (31%), Positives = 162/348 (46%), Gaps = 6/348 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I G V+G G G PHAE+ AL AG ARG
Sbjct: 10 MRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHALRAAGVLARG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC+H GR+ PCAQ ++E G+ RVV V DP + G L GI V++
Sbjct: 70 GTAYVTLEPCNHTGRTGPCAQALVEAGVARVVYAVADP-NGEAAGGADTLRAAGIEVEQG 128
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E +LT R H+T K A + D + A S I+ S+ VH LRA
Sbjct: 129 LLAEEAAAGNAGWLTSVRLGRPHVTWKYAATLDGRVAAADGTSRWISSPESRADVHRLRA 188
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
++DA++VG GT ADDP L R +I + ++++ A V +
Sbjct: 189 EADAVVVGSGTARADDPHLAVRGVAGATQPLRVVIDTEAVAVKPGARVLDDAAPTAVAVA 248
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ A + D+ LL L RGV S+L+EGG +A +F+ + V
Sbjct: 249 EDVLPDATAHIADVWRLPRASGGGLDVAALLATLHTRGVRSVLLEGGPTLAGAFVAAGAV 308
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
D +I Y + +++G G + + G+D+ +
Sbjct: 309 DRVIGYLAPVLLGAGPAALADAGITTITDALRLDVTETVRIGTDLRVT 356
>gi|307326834|ref|ZP_07606026.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
gi|306887597|gb|EFN18591.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
Length = 369
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 110/353 (31%), Positives = 162/353 (45%), Gaps = 10/353 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I+ G V+G G G PHAEV AL AG+ ARG
Sbjct: 10 MRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHALRAAGDRARG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC H GR+ PC+Q +I GI RV V DP + G + + +
Sbjct: 70 GTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAAAGVEVEAGL 129
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + +LT R + K A + D A S IT S+ VH LRA+
Sbjct: 130 LAEEAEAVNEPWLTAMRRGRPFVLWKFAATLDGRSAAADGTSRWITSPESRADVHRLRAE 189
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DA++VG GT ADDP L R P+R+++D + ++I+ AP ++
Sbjct: 190 ADAVVVGSGTQRADDPHLAVRDRE-GVTQPLRVVVDTAATIKPGARILDD--AAPTLLAV 246
Query: 250 ENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
D L R + + LL L GRGV S+L+EGG +A +F+ +
Sbjct: 247 AEDASTAHLPRRPGVETVRLPRADGGLAIPALLAELHGRGVRSVLLEGGPTLAGAFLAAG 306
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD +I Y + +++G G + + G D+ + +
Sbjct: 307 AVDKVIGYLAPVLLGAGPAALADAGITTIAQALRLATADVTRLGPDLRVTAVP 359
>gi|91216505|ref|ZP_01253471.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
700755]
gi|91185299|gb|EAS71676.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC
700755]
Length = 347
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 95/350 (27%), Positives = 162/350 (46%), Gaps = 19/350 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++ L + +G T NP V C+IV + +IG G G HAEV+A+ ++
Sbjct: 5 EFYIKRCLELAANGLGTTYPNPLVGCVIVYNDRIIGEGWHIKAGDDHAEVRAINSVKDQS 64
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ + YVTLEPCSHYG++PPC+ IIE I ++V+ DP +V+G G++ L
Sbjct: 65 LLKKSILYVTLEPCSHYGKTPPCSDLIIEKKIPKIVIGTLDPFAKVAGMGIKKLLAAKRS 124
Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFISKN 181
V + E + + T ++R + LK A + I IT S+
Sbjct: 125 VTVGVCEEACEELNKRFFTFHRKQRPFVILKWAETTHGFIAPTEQQKGDIFWITNAYSQQ 184
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH R++ AILVG T L D+P+L R +P R+++D KL ++ T+
Sbjct: 185 LVHKWRSEEQAILVGTQTALKDNPKLNVRHYE--GKNPTRVVIDRALKLPSSLALVDTSQ 242
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ +D + + + + + +++L+ L +G+ S+++EGGA S
Sbjct: 243 PTIIF----HDHKLTKASQYNLSFEALDFERNLPEQILSSLYEKGLQSVIIEGGAMTIQS 298
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
FI+ L D ++ IG+ I L+ L++ R ++ D
Sbjct: 299 FIDHELWDEARVF-----IGKNEIKDGLKGPVLKQ--KATRNEWLEGDQL 341
>gi|302343809|ref|YP_003808338.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
2075]
gi|301640422|gb|ADK85744.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM
2075]
Length = 377
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 118/359 (32%), Positives = 175/359 (48%), Gaps = 14/359 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D FM+ AL +R +G +S NP+V L+V +G ++GRG G PHAE AL +AG
Sbjct: 9 LDRHFMARALALTRRGLGRSSPNPAVGALVVAEGRIVGRGWHVKKGQPHAEPLALAQAGA 68
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGAT YVTLEPC+H G +PPC Q I+ G+ RVV DP+ V+G G +L+ +G+
Sbjct: 69 AARGATLYVTLEPCNHQGATPPCTQAILRAGVARVVYGAGDPNPTVAGGGGAFLAGRGLA 128
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + + +LT + R H+ LK A + D A S ITG S+ VH
Sbjct: 129 VEAGVLAEQCAFEHRFFLTHITKGRPHVILKTAATLDGKTATASGDSRWITGPASRRFVH 188
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR D + VG+GT L DDP+LTCR P+R+I+D ++ +K+ A
Sbjct: 189 RLRGWCDCVCVGVGTALVDDPQLTCR--LPGGRDPLRVIVDSRLRIDHRAKVFDPAAGGG 246
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAV 298
++ + + + DL +LL L RGV +L+EGGA +
Sbjct: 247 CLVACGPLARPADMERLRAVGAEVLRLSPAAGGGLDLAELLDHLGRRGVIGMLLEGGATL 306
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352
A F++ LVD ++ + + ++G L + + F DV L
Sbjct: 307 AWGFLSQGLVDEVMYFFAPKLLGGATAAPMLGGAGVAAMAQAIELGAPRLRRFNPDVLL 365
>gi|148242850|ref|YP_001228007.1| riboflavin biosynthesis protein ribD
(diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. RCC307]
gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. RCC307]
Length = 366
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 109/362 (30%), Positives = 167/362 (46%), Gaps = 10/362 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
D +M+ AL + G TS NP V C+++ +G ++G G G PHAEV AL A
Sbjct: 7 PSDRHWMARALALAALADGRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+ A+G T YVTLEPC H+GR+PPC++ +I G+RRVV+ + DPD RV+G G+ L G
Sbjct: 67 GDRAKGGTLYVTLEPCCHHGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLKAAG 126
Query: 124 IIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ V + + R R LK A+S D + S I+ +++
Sbjct: 127 MEVISGVRQAEAAQQNRAFLHRIRTGRPWGLLKWAMSLDGRTALPNGASQWISSPPARSW 186
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA DA++VG GTV AD+P LT R G + P+R++L L D+++
Sbjct: 187 VHHLRAAVDAVIVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRTLDLPSDAQLWDQTSA 244
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
++ + + I + LL L RG +L E G +A +
Sbjct: 245 TTLVAHGPEAPAQARQQLDQLGVERIELVACEPAALLEALAQRGCNRVLWECGPQLAAAA 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLE-YIG 356
I S V + ++G +PL + +R GSD + +
Sbjct: 305 IASGCVQETAAVVAPALLGGAAARTPLGDLGFTAMDQVIRLAPNIPQALGSDWLFQSLLP 364
Query: 357 KN 358
++
Sbjct: 365 ED 366
>gi|34540017|ref|NP_904496.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
gi|34396328|gb|AAQ65395.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83]
Length = 330
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 112/329 (34%), Positives = 162/329 (49%), Gaps = 14/329 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ +
Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L G+
Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGV 123
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179
V + +E +LT Q + R ++TLK A S D I A V ++ ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH R DAILVG T L D+P LT R +P+R++ D H L +
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVRH--WYGRNPLRVVTDRHLALPRHLTLFDG 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++ V E + + + L +L RG+ SLLVEGGA +
Sbjct: 242 SVPTLVFTEKEQPSGYPSAVSFVRIDPSRPPVEQMLAEL----HARGIQSLLVEGGACIL 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
SFI+S L D + + S I++ G+ +P
Sbjct: 298 RSFIDSGLYDDVRIEHSTIIL-NEGVRAP 325
>gi|312139593|ref|YP_004006929.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase ribg [Rhodococcus equi 103S]
gi|311888932|emb|CBH48245.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase RibG [Rhodococcus equi 103S]
Length = 336
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 117/361 (32%), Positives = 169/361 (46%), Gaps = 33/361 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
++S DA M A+ S G TS NP V +I+ G V+G G T G PHAEV AL
Sbjct: 1 MTSLDAA-MRLAIDASEAARGSTSPNPPVGAVILDASGAVVGVGATRPPGGPHAEVVALA 59
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARG TA VTLEPC+H GR+ PC++ +I+ GI V V DP+ + G L
Sbjct: 60 AAGERARGGTAVVTLEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRA 118
Query: 122 KGIIVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
I V + + L A+L RQ R H+T K A + D A S ITG +
Sbjct: 119 ARIEVTGGLLADDAERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEA 178
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +VH RA+ DAI+VG GTVLADDP LT RL + + + + S
Sbjct: 179 RARVHADRARLDAIVVGTGTVLADDPWLTARLPDGSLAPHQPLRVVVGNR-PVPSTARVL 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
AP +++ +D + ++L+ L + +LVEGG +A
Sbjct: 238 DDAAPTLVLRTHD----------------------VGEILSALADQD--DVLVEGGPRLA 273
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ + +VD + Y + +V+G G + + F + G D+ L I
Sbjct: 274 GAFLAAGVVDRVQAYIAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNLIP 333
Query: 357 K 357
+
Sbjct: 334 R 334
>gi|294010277|ref|YP_003543737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
japonicum UT26S]
gi|292673607|dbj|BAI95125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium
japonicum UT26S]
Length = 317
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 129/352 (36%), Positives = 172/352 (48%), Gaps = 45/352 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+AA+ S+ GL++ NP+V CLIVKDG V+GRG T GG PHAE QAL+EA + ARGA
Sbjct: 1 MAAAIALSQRGRGLSTPNPNVGCLIVKDGHVVGRGWTQRGGRPHAEAQALDEALDRARGA 60
Query: 71 TAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC H P CA + G+RRVV+ + DPD R G+G WL Q G+ VD
Sbjct: 61 TAYVTLEPCFHLSPRGPRCADRMARAGVRRVVIALRDPDPRTDGQGAAWLRQHGVAVDMG 120
Query: 130 MESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + RQ R +TLK+ +S D I +A S ITG ++ H+ RA
Sbjct: 121 LMAGEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPEARAHAHMERA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAILVG GT+ AD P L RL GL++ SP R++L H + I +
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLLGLEDRSPRRVLL-SHGDAPGGWETIAAPEDIAALP- 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
V LLVEGGA A +F+ + LV
Sbjct: 239 -------------------------------------QVDHLLVEGGAQAAAAFLRADLV 261
Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
D ++LYR+ I+IG G G + + G+D Y+
Sbjct: 262 DRLLLYRAPILIGAGLAGVGDIGLTDLAGAHGRWRLDDERRLGNDRLEVYLR 313
>gi|326382172|ref|ZP_08203864.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
B-59395]
gi|326198902|gb|EGD56084.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL
B-59395]
Length = 339
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 104/354 (29%), Positives = 145/354 (40%), Gaps = 32/354 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ S G T+ NP V +++ DG + G G T G PHAEV AL AGE ARG
Sbjct: 10 MRRAIAESEAAQGFTTPNPPVGAVVLDADGEIAGVGRTQPPGGPHAEVMALRAAGERARG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC H GR+ PC Q ++ GI V V DP+ + G Q L G+ V
Sbjct: 70 GTAVVTLEPCDHTGRTGPCTQALLSAGIADVHFAVADPNP-DAAGGAQTLRAAGVDVHPG 128
Query: 130 MESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +L RQ R +T KIA + D I S ITG ++ H +R
Sbjct: 129 VLESEARSGPLKYWLFRQKTGRPFVTAKIAATADGRIAAPDGSSQWITGPQAREHAHEVR 188
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DAI+VG GTVL DDP LT R + + + + ++ V +
Sbjct: 189 GRLDAIVVGTGTVLVDDPSLTARRPDGRLLDHQPTRVVLGLREVPAAARVRDGSAPFVHV 248
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + V+ +LVEGG V +F+ + L
Sbjct: 249 ASRDPRAVVDALPDA-------------------------LHVLVEGGPEVIGAFLAAGL 283
Query: 308 VDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
VD I Y + ++G G + F G D+ L +
Sbjct: 284 VDEIHAYLAPTILGAGRAAVSDESVATLAQAHRFRRSGLLELGEDILLILEPRR 337
>gi|326780548|ref|ZP_08239813.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
XylebKG-1]
gi|326660881|gb|EGE45727.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus
XylebKG-1]
Length = 366
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 107/357 (29%), Positives = 159/357 (44%), Gaps = 4/357 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL
Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G
Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGGDTLRHAG 122
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
++ E + A+LT R ++ K A + D I A S IT ++
Sbjct: 123 VRAEGGLLADEAEAGNAAWLTSVRRGRPYVMWKYAATLDGRIAAADATSRWITSPEARAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA++DA+LVG GT DDP+L R ++ + ++++
Sbjct: 183 VHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQPLRVVVDTNATAVKPGARVLDATAP 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + L + DL LL L RGV S+L+EGG +A +F
Sbjct: 243 TLVAVADDAPAGHLPEPAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTLAGAF 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + VD ++ Y + +++G G + + G D+ + +
Sbjct: 303 VAAGKVDKVVGYLAPVLLGAGPAALADAGISTIAGALRLDVTETVPIGPDLRITAVP 359
>gi|325268454|ref|ZP_08135084.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
16608]
gi|324988982|gb|EGC20935.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM
16608]
Length = 380
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 95/387 (24%), Positives = 142/387 (36%), Gaps = 37/387 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D +M L+ +R L NP V +IV KDG +IG G G HAEV A
Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG
Sbjct: 61 FASVKKEEEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
++ L + GI V + E E ++T R ++ LK A ++
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFVTYNTHHRPYVILKWAQTKRVTTNTLFNTPTNT 180
Query: 175 ---------TGFISKNQVHLLRAQSDAILVGIGTVLA--------DDPELTCRLNGLQEH 217
+ + R D + + G+ +
Sbjct: 181 LSNTPAIPSPSPLPHREGSEHRDSPDDLSIINGSQDEITDREKKTSAAYIGNLPGRDYHP 240
Query: 218 SPMRIILDPHFKLSLDSKII-------KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ L ++ L P + V E P +
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPKREGE 300
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
+ L + + SL+VEGGA SF+ + L D I + + IGEG +E
Sbjct: 301 YATPAEALSHLYAEKK-QSLIVEGGAKTLQSFLEAGLWDEIRIETAPFTIGEG-----IE 354
Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L N +++G+ + Y +
Sbjct: 355 APPLPGNIRITGIEHYGN-AIITYERR 380
>gi|311739500|ref|ZP_07713335.1| riboflavin biosynthesis protein RibD [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305316|gb|EFQ81384.1| riboflavin biosynthesis protein RibD [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 340
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 110/348 (31%), Positives = 154/348 (44%), Gaps = 27/348 (7%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A+ G TS NP V +IV G ++G G T G HAEV AL EAG++ARGAT
Sbjct: 16 RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
A VTLEPC+H GR+ PCAQ +I+ G+ RV DP + +G +
Sbjct: 76 AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAGGAEVLARAGVDVAKLEKP 135
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
+ L +L +R H+TLK A + D A S ITG +++ VH RA D
Sbjct: 136 PHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRD 195
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
AI+VG GT LAD+P LT R + D + +++ +
Sbjct: 196 AIVVGTGTALADNPSLTAR------------LSDGSLRA----------HQPRRVVIGKR 233
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
D A + L + G +LVEGGA +A SF+ + LVD+I
Sbjct: 234 DLESAGDAASHLRELGYEQYDSIEEALYEL-YATGARDVLVEGGAGLASSFLKADLVDAI 292
Query: 312 ILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
Y + +++GEG + F V G DV +EY+
Sbjct: 293 SAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340
>gi|332662070|ref|YP_004444858.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
DSM 1100]
gi|332330884|gb|AEE47985.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis
DSM 1100]
Length = 351
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 104/337 (30%), Positives = 152/337 (45%), Gaps = 11/337 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
R+++ +R G S NP V ++V D +IG G G HAEV AL R
Sbjct: 7 RYITRCFDLARMGAGSVSPNPMVGAVLVYDNKIIGEGYHQKYGGAHAEVNALASVSLSNR 66
Query: 69 ----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+T YV+LEPC +G++PPC II+ I RVV+ D V GRG++ L GI
Sbjct: 67 PLIPESTLYVSLEPCCIFGKTPPCTNLIIQEKIPRVVISCLDLTPEVKGRGVELLRAHGI 126
Query: 125 IVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + L A ++R ++ LK+A++ + IT ++K V
Sbjct: 127 EVTTGVLEKEGQALAATRNVSVSQQRPYVILKMAITSNGYFAPLDRSQFWITQTLTKRLV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H R +SDAILVG T L DDP+L R SP+RI+LD +L K+
Sbjct: 187 HRWRMESDAILVGTTTALMDDPQLDNR--LYYGKSPLRIVLDRRLQLPNSLKVFSDGQPT 244
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+I E + A +++ + + L + + +LVEGG V S I
Sbjct: 245 LIITERE---KSINSASHLHYLSMNFGETFWPDLLAILWREYKLGVILVEGGQKVLSSLI 301
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
++ L D + Q + GIPSP G EKN
Sbjct: 302 DTGLWDEARVLIGQKSL-TVGIPSPTLPGSPEKNLKL 337
>gi|163847753|ref|YP_001635797.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
J-10-fl]
gi|222525619|ref|YP_002570090.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
gi|163669042|gb|ABY35408.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus
J-10-fl]
gi|222449498|gb|ACM53764.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl]
Length = 391
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 117/356 (32%), Positives = 170/356 (47%), Gaps = 14/356 (3%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
AL+ + VG TS NP V ++V+DG V+G G T G PHAE AL AGE ARGA
Sbjct: 15 ELALQQAAAVVGRTSPNPPVGAVVVRDGQVVGLGATQPAGGPHAERIALAAAGERARGAD 74
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
Y TLEPC+ YGR+PPC + II GIRRV DPD R+ L GI V R+
Sbjct: 75 LYTTLEPCTFYGRTPPCTEAIIAAGIRRVFFIAHDPDPRMGDGAAAVLQPAGIEVYRITT 134
Query: 132 --SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L + R R +T K A++ D I A S IT ++ QVH LR Q
Sbjct: 135 GAATVAGQLAPFRCRVQCGRPLVTAKYAMTLDGRIATASGDSRWITDPAARAQVHRLRDQ 194
Query: 190 SDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
D I+VG+GT+ DDP+LT R + + P+R+I+D + L +++++ L +I
Sbjct: 195 VDVIMVGVGTIRNDDPQLTTRLDQHWREPRHPLRVIVDSRGQTPLHARVVRGDLPGQTLI 254
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSF 302
+P A + + + ++ + LL L G LLVEGGA + +
Sbjct: 255 ACVQPEPAWLAAMQSRGVRVVQFPPDATGRVALAPLLHYLAHEGYNHLLVEGGAMLLGAL 314
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
L+D I + V+ + P P+ + + + R + + D L
Sbjct: 315 HAECLIDEIWAFIGARVVNDALAPGPMAGPGVACMAMARRYRLRRLEQYDQDALLI 370
>gi|255325040|ref|ZP_05366146.1| riboflavin biosynthesis protein RibD [Corynebacterium
tuberculostearicum SK141]
gi|255297605|gb|EET76916.1| riboflavin biosynthesis protein RibD [Corynebacterium
tuberculostearicum SK141]
Length = 340
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 110/348 (31%), Positives = 154/348 (44%), Gaps = 27/348 (7%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A+ G TS NP V +IV G ++G G T G HAEV AL EAG++ARGAT
Sbjct: 16 RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
A VTLEPC+H GR+ PCAQ +I+ G+ RV DP + +G +
Sbjct: 76 AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAGGAEVLAGAGVDVAKLEKP 135
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
+ L +L +R H+TLK A + D A S ITG +++ VH RA D
Sbjct: 136 PHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRD 195
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
AI+VG GT LAD+P LT R + D + +++ +
Sbjct: 196 AIVVGTGTALADNPSLTAR------------LSDGSLRA----------HQPRRVVIGKR 233
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
D A + L + G +LVEGGA +A SF+ + LVD+I
Sbjct: 234 DLESAGDAASHLRELGYEQYDSIEEALYEL-YATGARDVLVEGGAGLASSFLKADLVDAI 292
Query: 312 ILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
Y + +++GEG + F V G DV +EY+
Sbjct: 293 SAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340
>gi|114704832|ref|ZP_01437740.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
HTCC2506]
gi|114539617|gb|EAU42737.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi
HTCC2506]
Length = 381
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 166/367 (45%), Positives = 220/367 (59%), Gaps = 12/367 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58
+S+ + RFM+AA+RF H GLT TNPSVA LIV+D ++GRG+TA GG PHAE Q
Sbjct: 14 LSAANERFMAAAIRFGFRHAGLTGTNPSVATLIVRDDGAGPRIVGRGITARGGRPHAEAQ 73
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AL EAG ARGA AYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RV G+G
Sbjct: 74 ALGEAGTLARGAVAYVTLEPCAHHGRTPPCAEALVASGVSRVVSAAADPDPRVDGKGHAI 133
Query: 119 LSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
L + G+ V + E L AYLTR R ITLK+AVS D MIG G G V ITG
Sbjct: 134 LEKGGLSVTPRVMAKEAASDLSAYLTRHARNRPQITLKMAVSPDGMIGRKGHGQVFITGP 193
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
I+ Q HL+RA+ DAILVG+GTV DDP L CRL GL+ SP RI+LDP + ++ ++
Sbjct: 194 IANRQTHLVRARHDAILVGMGTVREDDPGLDCRLPGLENRSPRRIVLDPDLTIEPETGLV 253
Query: 238 KTALLAPVIIVTENDDP-------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
++A P+ IV D + A A + L +L+ L G+ ++
Sbjct: 254 RSARQTPLTIVARGDTDADKRQSLMAAGADFVACDVVPGTGRVALPELMEDLGATGIQNI 313
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
LVEGGA V SF+ + LVD +IL + ++GEGGI SP++ ++ F R FG D
Sbjct: 314 LVEGGATVGESFLEADLVDRLILVEGETMVGEGGIVSPIDVASGKQRFKLTERLRFGPDQ 373
Query: 351 CLEYIGK 357
E+ +
Sbjct: 374 WFEFERR 380
>gi|182439882|ref|YP_001827601.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468398|dbj|BAG22918.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 366
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 108/357 (30%), Positives = 160/357 (44%), Gaps = 4/357 (1%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL
Sbjct: 3 TAADITAMRRAISLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G
Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGGDTLRHAG 122
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
++ E + A+LT R ++ K A + D I A S IT ++
Sbjct: 123 VRAEGGLLADEAEAGNAAWLTSVRRGRPYVLWKYAATLDGRIAAADATSRWITSPEARAD 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LRA++DA+LVG GT DDP+L R ++ + ++++
Sbjct: 183 VHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQPLRVVVDTNATAVKPGARVLDATAA 242
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + L A + DL LL L RGV S+L+EGG +A +F
Sbjct: 243 TLVAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTLAGAF 302
Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + VD ++ Y + +++G G + + G D+ + +
Sbjct: 303 VAAGKVDKVVGYLAPVLLGAGPAALADAGISTIAGALRLDVTETVPIGPDLRITAVP 359
>gi|262382448|ref|ZP_06075585.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
gi|262295326|gb|EEY83257.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B]
Length = 345
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 95/325 (29%), Positives = 156/325 (48%), Gaps = 15/325 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIG----MAGCGSVPIT 175
+ G+ V + E L+ Q + R +I LK A S+D I ++
Sbjct: 121 EAGVEVVTGVMEEEARVLNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLNGSSRTLIFTEKEVENR------ENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVI 320
+ +SF+ + + D + + + +
Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL 317
>gi|255012465|ref|ZP_05284591.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_1_7]
Length = 359
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 16/353 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPI----T 175
+ G+ V + E L+ Q + R +I LK A S+D I + +
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVLEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ +L + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLDGSLRTLIFTEKEVENREDVE------YIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ +SF+ + + D + + + + G+ +P+ E + + +
Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLEKGVVRRVSRGSVMSIKN 344
>gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Methylibium petroleiphilum PM1]
gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Methylibium petroleiphilum PM1]
Length = 377
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 111/375 (29%), Positives = 171/375 (45%), Gaps = 21/375 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M ++ + + ALR + +GL+ NP V C+I DG ++ G T G HAEV A
Sbjct: 1 MKLTPS-ESW-ALALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSA 58
Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
L A G RG TA+VTLEPCSH+GR+PPC ++E G+ V+V + DP+ V+G G+
Sbjct: 59 LRAAQAAGHTVRGGTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGI 118
Query: 117 QWLSQKGIIVD-----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
L GI V + + +L+R + +R + LKIA S D + S
Sbjct: 119 GRLRAAGIDVTVLAPGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLS 178
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
ITG ++ H R ++ A+L GIGTV+ DDP L RL R+++D ++
Sbjct: 179 QWITGDAARTDGHAYRKRAGAVLTGIGTVIDDDPRLDVRLVDTVLQPC-RVVVDSKLDIA 237
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGR 285
LD++I+ V + DL +L L R
Sbjct: 238 LDARILSPPGERLVYTASALARHAAPKVRELAEQGVSVLACANADGKVDLGAMLDDLARR 297
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVR 342
+ L VE G+ ++ SF+ + LVD ++Y + +++G G PL V
Sbjct: 298 EINELHVEAGSKLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEGLALEFVS 357
Query: 343 RDYFGSDVCLEYIGK 357
+ G+D+ L
Sbjct: 358 VERVGADLRLIARPP 372
>gi|226226877|ref|YP_002760983.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Gemmatimonas aurantiaca T-27]
gi|226090068|dbj|BAH38513.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Gemmatimonas aurantiaca T-27]
Length = 384
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 125/361 (34%), Positives = 184/361 (50%), Gaps = 13/361 (3%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
+ D RFM A+ + G + NP V ++V+DG V+G G G P HA A
Sbjct: 22 TVDDVRFMRRAIALAERGAGQVAPNPKVGAVLVRDGQVVGEGWHQQYGGPHAEVHALAAA 81
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A ARGATAYV+LEPC+H+G++PPC + +I G+ RVV DP+ + +G G++ L
Sbjct: 82 HAVAANAARGATAYVSLEPCNHHGKTPPCTEALIAAGVARVVCATRDPNPKAAG-GIERL 140
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTR--QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
GI V + + +A + R +TLK+AVS D I A +TG
Sbjct: 141 EAAGIRVTVGVCEHEALVQNAPFFHAARGTDRPFVTLKLAVSIDGAIVDASRQRGWLTGP 200
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ VH LRA +DA+ VGIGT LADDP LT RL +P RI+ D +L LDS ++
Sbjct: 201 AAHAAVHALRADADAVAVGIGTALADDPALTVRLVEAPRVAPRRIVFDRQGRLPLDSALV 260
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+TA PV ++T PV A A + ++ L L L GV LLVEGGA
Sbjct: 261 RTAGEIPVSVITHAPRPVAANALADAGVQVLEAAG--LADALRTLWAEGVRHLLVEGGAE 318
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + +++ LV +I++++ +++G G + + P + R FG D+
Sbjct: 319 LGSALLHAGLVHHLIIFQAPVILGAGAVSAFATFPAAVADTAPRLRVLERRVFGDDLMTR 378
Query: 354 Y 354
Y
Sbjct: 379 Y 379
>gi|307293539|ref|ZP_07573383.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
L-1]
gi|306879690|gb|EFN10907.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum
L-1]
Length = 317
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 131/354 (37%), Positives = 176/354 (49%), Gaps = 45/354 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+AA+ S GL++ NP+V CLIVK+G V+GRG T GG PHAE QAL+EA E ARGA
Sbjct: 1 MAAAIALSERGRGLSTPNPNVGCLIVKEGHVVGRGWTQKGGRPHAEAQALDEAMERARGA 60
Query: 71 TAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC H R P CA + G+RRVV+ + DPD R G+G WL Q+GI VD
Sbjct: 61 TAYVTLEPCFHLSSRGPRCADLMARAGVRRVVIALRDPDPRTDGQGADWLRQRGIAVDMG 120
Query: 130 MESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++ RQ R +TLK+ +S D I +A S ITG ++ H+ RA
Sbjct: 121 LMAQEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPDARAHAHVERA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAILVG GT+ AD P L RL GL++ SP R++L H ++I +
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRSPRRVLL-SHGDAPDGWEVIAAPEDIAALP- 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
V LLVEGGA A +F+ + LV
Sbjct: 239 -------------------------------------QVDHLLVEGGAQAAAAFLRADLV 261
Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
D ++LYR+ I+IG+G G + + G+D Y+
Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLTDLADAHGRWRLDEERRLGNDRLEVYLRNR 315
>gi|89891631|ref|ZP_01203135.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
BBFL7]
gi|89516178|gb|EAS18841.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium
BBFL7]
Length = 337
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 105/366 (28%), Positives = 166/366 (45%), Gaps = 40/366 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
+++ D ++M L+ ++ +G T NP V +IV + +IG G G PHAEV A+
Sbjct: 1 MTTED-KYMQRCLQLAQNGLGTTYPNPLVGSVIVSENDEIIGEGWHLKSGEPHAEVNAVR 59
Query: 62 EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+A G+ AT YV LEPCSH G++PPCA I++ G ++VVV DP +V+G+G
Sbjct: 60 DAEKKGYDGDAFAKATIYVNLEPCSHTGKTPPCASMIVQKGFKKVVVGTLDPHDKVAGKG 119
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-- 172
+ + + GI V + E E + T +R ++ LK A + D I A
Sbjct: 120 ITIIEKAGIEVVVGILEKECNELNKRFFTFHRRQRPYVILKWAETSDGFIAPATKNEQQP 179
Query: 173 -PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
IT S+ H LRA+ DAILVG TV+ D+P LTCR + + + + + S
Sbjct: 180 VWITNKYSRQLSHQLRAEEDAILVGAKTVIDDNPSLTCRDWSGKNPTRVILDS----RNS 235
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ S AP + + + ++L L V S++
Sbjct: 236 ITSDYQVMDDAAPTLKL--------------------QLSSSNTLEILNSLYQNNVQSVI 275
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+EGG SFI++ L D + V+ G+ +P+ +G + +DV
Sbjct: 276 IEGGTTTIQSFIDTGLWDEAYQFMGTEVLFHEGLQAPVLKGDYSMLYR----KMIANDVL 331
Query: 352 LEYIGK 357
Y K
Sbjct: 332 KIYRKK 337
>gi|322434629|ref|YP_004216841.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
gi|321162356|gb|ADW68061.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9]
Length = 373
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 125/360 (34%), Positives = 174/360 (48%), Gaps = 15/360 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
S D +FM AL + L S NP V C+ V+DG +I G Y HAE+ AL++A
Sbjct: 2 SQDQQFMQRALELAESTTALASPNPQVGCVFVRDGKIIAEGFHLYEARDHAEIAALKQAE 61
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G + G TAYVTLEPCSH+GR+ PCA +I GI R V+ D + V G G+ L
Sbjct: 62 ANGIDVAGDTAYVTLEPCSHHGRTGPCADVLIAAGISRCVIATLDANPVVRGNGVAKLEA 121
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPIT 175
GI V + E + + A+ +TLK A+S D + +T
Sbjct: 122 AGIAVTVGVLEQKARTLNDAFAWSIRHNLPMVTLKAALSVDGKLAPPPSQRQRPEPHWLT 181
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G S+ +V LR SDAIL GIGTVLADDP LT R + RIILD H ++ + SK
Sbjct: 182 GPESRAEVQRLRHASDAILTGIGTVLADDPTLTDRTGLPRRRPLQRIILDAHLRIPVASK 241
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI---LVGRGVTSLLV 292
++++A +I +N A I D L I L R + S+L+
Sbjct: 242 LVESAADDLLIFCNQNAPQDRLTALEAAGAEIHQVPGTDRLDLRAILSTLHERKLLSVLL 301
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRDYFGSD 349
E G ++ +F+ + LV IL+ + +GEG +P + LE+ V R FG D
Sbjct: 302 EAGPSLNGAFLAAHLVQRAILFYADTELGEGALPFAEDLTNPHLLEQTMTHVTRTTFGPD 361
>gi|2766596|gb|AAB95439.1| homologue of Bacillus subtilis ribG [Shigella flexneri]
Length = 245
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 100/240 (41%), Positives = 132/240 (55%), Gaps = 2/240 (0%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE
Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121
Query: 126 VDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V M SE + +L R +I LK+ S D MA S IT ++ V
Sbjct: 122 VSHGLMMSEPEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQS AIL TVLADDP LT R + L E + + + + + I + P
Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQA-LYPQQNLRQPIRIVIDSQNRVTP 240
>gi|188994131|ref|YP_001928383.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
ATCC 33277]
gi|188593811|dbj|BAG32786.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis
ATCC 33277]
Length = 330
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 112/329 (34%), Positives = 162/329 (49%), Gaps = 14/329 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ +
Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L +
Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDASV 123
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179
V + +E +LT Q + R ++TLK A S D I A V ++ ++
Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
VH R DAILVG T L D+P LT R +P+R++ D H L +
Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVRH--WYGRNPLRVVTDRHLALPRHLTLFDG 241
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
++ V E + + + L +L RG+ SLLVEGGA +
Sbjct: 242 SVPTLVFTEKEQPSGYPSSVSFVRIDPSRPPVEQMLAEL----HARGIQSLLVEGGACIL 297
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328
SFI+S L D + + RS I++ G+ +P
Sbjct: 298 RSFIDSGLYDDVRIERSTIIL-NEGVRAP 325
>gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
12809]
gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM
12809]
Length = 387
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 101/347 (29%), Positives = 168/347 (48%), Gaps = 6/347 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M + + G T TNP V ++ ++ RG G PHAEV A++ G
Sbjct: 12 MQECAQLALLGKGYTKTNPVVGAIVANQSEILSRGWHMAYGGPHAEVNAIDSCPVSTEGL 71
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCSH G++PPC + I++ GIRRV + V DP+ V+G+G+++L G+ V
Sbjct: 72 DLYVTLEPCSHSGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYVGY 131
Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + ++ EK+ + T K A + D I + S I+ S+ H +RA
Sbjct: 132 MEDLCASIIEDFVKFITEKKPYYTFKTAQTLDGKIASSTGDSKWISSEASRTYTHYMRAV 191
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SDAILVG+ TV+ADDPEL R+ +LDP ++ LD K+++ + + +
Sbjct: 192 SDAILVGVNTVIADDPELNVRMVKSDRDPFKI-VLDPKGRMPLDRKLVENSADKLIYVTC 250
Query: 250 ENDDPVLALAFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
AL + ++ DL L LV R + ++++EGG A F ++ LV
Sbjct: 251 AESRITEALRNKGADVITLGGDGSLDLNVLSDELVERSILNVMIEGGGTTAGKFFDAGLV 310
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352
D + ++ + +++G + +E V+ +F D+ +
Sbjct: 311 DKVNIFIAMMIMGGSVSSVGGNGVENVAQAYKLKEVQSKHFEGDLMI 357
>gi|150010266|ref|YP_001305009.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
ATCC 8503]
gi|149938690|gb|ABR45387.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis
ATCC 8503]
Length = 359
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 16/353 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIG----MAGCGSVPIT 175
+ G+ V + E L+ Q + R +I LK A S+D I ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLNGSSRTLIFTEKEVENR------ENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ +SF+ + + D + + + + G+ +P+ +
Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL-YQGVHTPMLGKEAVSGISGRSVMSIKN 344
>gi|289424953|ref|ZP_06426732.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
SK187]
gi|289154652|gb|EFD03338.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
SK187]
gi|313763122|gb|EFS34486.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL013PA1]
gi|313793372|gb|EFS41430.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL110PA1]
gi|313800984|gb|EFS42252.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL110PA2]
gi|313812185|gb|EFS49899.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL025PA1]
gi|313814722|gb|EFS52436.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL059PA1]
gi|313828278|gb|EFS65992.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL063PA2]
gi|313838062|gb|EFS75776.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL086PA1]
gi|314914448|gb|EFS78279.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL005PA4]
gi|314917772|gb|EFS81603.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL050PA1]
gi|314919502|gb|EFS83333.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL050PA3]
gi|314930094|gb|EFS93925.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL067PA1]
gi|314957061|gb|EFT01166.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL027PA1]
gi|314957695|gb|EFT01798.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL002PA1]
gi|314963428|gb|EFT07528.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL082PA1]
gi|314968931|gb|EFT13029.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL037PA1]
gi|315077277|gb|EFT49339.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL053PA2]
gi|315079956|gb|EFT51932.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL078PA1]
gi|315097872|gb|EFT69848.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL059PA2]
gi|315100736|gb|EFT72712.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL046PA1]
gi|315109263|gb|EFT81239.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL030PA2]
gi|327451322|gb|EGE97976.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL087PA3]
gi|327451701|gb|EGE98355.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL092PA1]
gi|327452164|gb|EGE98818.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL083PA2]
gi|328752420|gb|EGF66036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL087PA1]
gi|328755093|gb|EGF68709.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL025PA2]
Length = 331
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|295131277|ref|YP_003581940.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
SK137]
gi|291375861|gb|ADD99715.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
SK137]
gi|313773159|gb|EFS39125.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL074PA1]
gi|313810307|gb|EFS48023.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL083PA1]
gi|313830202|gb|EFS67916.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL007PA1]
gi|313833124|gb|EFS70838.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL056PA1]
gi|314972940|gb|EFT17036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL053PA1]
gi|314975459|gb|EFT19554.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL045PA1]
gi|314984254|gb|EFT28346.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL005PA1]
gi|315096643|gb|EFT68619.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL038PA1]
gi|327325313|gb|EGE67118.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL096PA2]
gi|327443828|gb|EGE90482.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL043PA1]
gi|327449140|gb|EGE95794.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL043PA2]
gi|328761071|gb|EGF74621.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL099PA1]
Length = 331
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 105/331 (31%), Positives = 160/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S IT +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITAEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|312131512|ref|YP_003998852.1| riboflavin biosynthesis protein ribd [Leadbetterella byssophila DSM
17132]
gi|311908058|gb|ADQ18499.1| riboflavin biosynthesis protein RibD [Leadbetterella byssophila DSM
17132]
Length = 322
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 102/349 (29%), Positives = 159/349 (45%), Gaps = 38/349 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67
+M AL + S NP V C+IV + +IG G G PHAEV A++ ++
Sbjct: 3 YMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+T YVTLEPC+H+G++PPCA+ +I+ +++VVVC DP +V+G+G+ L GI V+
Sbjct: 63 SESTVYVTLEPCAHFGKTPPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVE 122
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + EG+ + R ++ LK A S+D I G + I+ I+ QVH
Sbjct: 123 VGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFISAEGGKPIKISHPITDIQVHRW 182
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+ DAIL+G T D+P+L R + P IIL + L +K K +
Sbjct: 183 RAEEDAILIGKNTADLDNPQLNVRYWTEDKQ-PKPIILGQPTRQDLRAKGAKIFPNGKNL 241
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
++L L G+ S+LVEGG + SFI
Sbjct: 242 T-----------------------------EILRQLAQDGIQSILVEGGTKIHTSFIEEG 272
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
L D I + + G+ I + ++ L + + +D Y
Sbjct: 273 LFDEIRVIQ-----GDIEILNGVKAPQLPDGLILTDHHTYRNDHIKVYR 316
>gi|318057036|ref|ZP_07975759.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actG]
Length = 364
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 8/350 (2%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG
Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+
Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGL 129
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E E A+LT R H+T K A S D A S IT ++ VH LRA
Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+LVG GT DDP L R ++ + ++++ AP ++
Sbjct: 190 CDAVLVGSGTARTDDPHLAVRGIPGAPQPLRVVLDTEGTAVRGGARVLDD--AAPTLVAL 247
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+D P A + DL LL L R V +L+EGGA +A +F+ + D
Sbjct: 248 ADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTD 307
Query: 310 SIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++ Y + +++G G + + G D+ + +
Sbjct: 308 RVVGYLAPVLLGAGPAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357
>gi|298374645|ref|ZP_06984603.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
gi|298269013|gb|EFI10668.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19]
Length = 359
Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 161/353 (45%), Gaps = 16/353 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+
Sbjct: 1 MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+E +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L
Sbjct: 61 VKDESLLTDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120
Query: 121 QKGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIG----MAGCGSVPIT 175
+ G+ V + E L+ Q + R +I LK A S+D I ++
Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ VH LR++ AI+VG T L D+P L R P+R++LD + +
Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVRHWSGNS--PVRVVLDRRLVIPDSYR 238
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
++ + + E ++ I + ++++L L R + SLLVEGG
Sbjct: 239 LLNGSSRTLIFTEKEVENR------ENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ +SF+ + + D + + + + G+ +P+ +
Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLGKEAVSGISGRSVMSIKN 344
>gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Acidovorax sp. JS42]
gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Acidovorax sp. JS42]
Length = 366
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 106/358 (29%), Positives = 167/358 (46%), Gaps = 13/358 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
+ AL + + L++ NP V C+I +G ++G+G T G HAEV AL +A G
Sbjct: 3 HIDQALGLAAQALFLSNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGC 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGATAYVTLEPC+H GR+ PC +I+ GI VV + DP+ V+G+G L G+
Sbjct: 63 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQ 122
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ ++ + + +R V + +K A S D + +A S IT ++ H
Sbjct: 123 VEVGPGGTQSRELNIGFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L G+GTVLADDP L R P +I+D + ++++ A
Sbjct: 183 AWRARACAVLTGVGTVLADDPRLDVREIAT-PRQPHLVIVDSLLQTPANARLFDVADRRV 241
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR---GVTSLLVEGGAAVAHS 301
+I D A + I + + L +L GV L +E G + S
Sbjct: 242 LIYTARPDAAGAAALRARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNGS 301
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
F+ LVD ++LY + I++G+G PL+ G D+ +
Sbjct: 302 FLREGLVDELLLYLAPIMLGQGAQGLSNWGPLQTLADGIPMQFQAVQQVGPDLRVVAR 359
>gi|50843212|ref|YP_056439.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
KPA171202]
gi|50840814|gb|AAT83481.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
KPA171202]
gi|315106176|gb|EFT78152.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL030PA1]
Length = 331
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G+G
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGDGRA 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 374
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 175/361 (48%), Gaps = 13/361 (3%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL +R +G TS NP V C++V++G+V+ G G HAE AL ++
Sbjct: 14 EAFMRRALALARQGMGHTSPNPMVGCVVVQNGVVVAEGYHERVGGYHAERNALTHCEKDL 73
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
A YVTLEPC HYG++PPC + IIE GI RV V D + +V+GRG++ L GI V
Sbjct: 74 SDADLYVTLEPCCHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKILEAAGIEVV 133
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ E++ + + + + K A++ D I A + ++G S+ QV +
Sbjct: 134 TGILETKCRKLNEVFYHYMTMRTPFVVSKYAMTLDGKIACASGDAKWVSGEASRAQVQRM 193
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R Q I+VGIGTV+ADDP L CR+ P+RI+ D + + L S+I++TA PVI
Sbjct: 194 RKQYSGIMVGIGTVMADDPMLNCRIEA--GVDPVRIVCDSNLHIPLASRIVQTAGDIPVI 251
Query: 247 IVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ A A + DL L+ +L R + S+L+EGGA + +
Sbjct: 252 VACTETAAASAKATALQAAGVTVLPAGDGTRVDLNILMRLLGRREIDSVLLEGGATLNAA 311
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
+ +V+ ++ + + ++G P P+ + V G D+ +
Sbjct: 312 AFEAGVVNKVVAFIAPKLVGGAAAPPPVGGAGIPCMADAIVLTSVETGRCGDDLWVSGYP 371
Query: 357 K 357
Sbjct: 372 D 372
>gi|326388321|ref|ZP_08209917.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Novosphingobium nitrogenifigens DSM 19370]
gi|326207053|gb|EGD57874.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Novosphingobium nitrogenifigens DSM 19370]
Length = 321
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 119/363 (32%), Positives = 164/363 (45%), Gaps = 51/363 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP DA +M +A + L+ NP+V ++V++ V+GRG T GG PHAE +AL
Sbjct: 1 MP---TDADWMRSAAALAARGRPLSRPNPAVGAVLVRENRVVGRGFTRAGGRPHAEAEAL 57
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG+ RGAT YVTLEPC+H P CA ++ RVVV DPD R +G+G+ L
Sbjct: 58 AMAGDATRGATLYVTLEPCAHVSPRGPACADLVVAARPARVVVGCTDPDPRTAGQGIARL 117
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + + L YL R E R +TLK+A S D I + S ITG +
Sbjct: 118 RDAGIAVDLIDCPAARASLAGYLRRTREGRPEVTLKLATSLDGRIALPSGESRWITGDAA 177
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H RA++DAILVG GT+ D P L RL GL E SP+R +L S +
Sbjct: 178 RAHAHAERARADAILVGGGTLRIDAPRLDVRLPGLAERSPLRWVLTRGTAPDGWSAVSDI 237
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L VEGGA A
Sbjct: 238 TAPGAFDDA---------------------------------------QYLFVEGGAQAA 258
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLE 353
F+ +VD ++LYR+ I+IG+G + + + L++ + V G+D
Sbjct: 259 AHFLAVDMVDRLLLYRAPILIGDG--LAAIGDIGLDRLDAAHGRWQLVSHRALGNDTLEI 316
Query: 354 YIG 356
Y
Sbjct: 317 YER 319
>gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Candidatus Koribacter versatilis Ellin345]
gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Koribacter versatilis Ellin345]
Length = 399
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 114/380 (30%), Positives = 179/380 (47%), Gaps = 28/380 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D RF AL + + + S NP V ++V DG VIG G Y G HAEV ALE+AG
Sbjct: 16 DERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKHAEVLALEQAGN 75
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGAT Y+ LEPCSH GR+ PCA +I GI+RVV + DP+ V+GRG L + G+
Sbjct: 76 AARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGRGFAKLREAGVE 135
Query: 126 -VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--------GCGSVPITG 176
+ + + + R +TLK A++ D I IT
Sbjct: 136 LLVGVFADYARKLNEGFSKRIRTGLPLVTLKAAMTLDGKIAPPPAEVTDIGFSQPGWITS 195
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
I++ V LR +D+I++G+GTV++D+P LT R + +R++LD +L LDS++
Sbjct: 196 EIARAHVQELRHAADSIMIGVGTVVSDNPLLTDRTGLPRRRPLLRVVLDSQLRLPLDSRL 255
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-------------KKLLTILV 283
+KTA ++ + ++ A + ++ ++ L
Sbjct: 256 VKTAHHDVLVFCSFAEEKKRAALEERGIQVEQVPLAKNEPGGVAVAGGRPDLNAVVERLG 315
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----F 338
R + SL+VEGGAAV + + + +VD + LY + ++G G +
Sbjct: 316 ARELNSLIVEGGAAVNWAALAAGIVDKVFLYYAPKILGGGNAVPFALGPGYARMDEAAYL 375
Query: 339 MCVRRDYFGSDVCLEYIGKN 358
+ FG D +E ++
Sbjct: 376 RNLELHRFGEDFAVEGYLRD 395
>gi|289427738|ref|ZP_06429450.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
gi|289159229|gb|EFD07421.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165]
gi|313808724|gb|EFS47178.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL087PA2]
gi|313817904|gb|EFS55618.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL046PA2]
gi|313819816|gb|EFS57530.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL036PA1]
gi|313823306|gb|EFS61020.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL036PA2]
gi|313824948|gb|EFS62662.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL063PA1]
gi|314925876|gb|EFS89707.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL036PA3]
gi|314960753|gb|EFT04854.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL002PA2]
gi|314979409|gb|EFT23503.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL072PA2]
gi|314986170|gb|EFT30262.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL005PA2]
gi|314988782|gb|EFT32873.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL005PA3]
gi|315083284|gb|EFT55260.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL027PA2]
gi|315086943|gb|EFT58919.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL002PA3]
gi|315089869|gb|EFT61845.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL072PA1]
gi|327325060|gb|EGE66866.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL096PA3]
gi|327449258|gb|EGE95912.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL013PA2]
gi|328756397|gb|EGF70013.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL020PA1]
Length = 331
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 105/331 (31%), Positives = 160/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ RGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|327332327|gb|EGE74063.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL097PA1]
Length = 331
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 105/331 (31%), Positives = 160/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + + G D+ +
Sbjct: 297 AVVDPTVATLSQAHHLVIDDVTQLGPDIQIH 327
>gi|282855094|ref|ZP_06264426.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
gi|282581682|gb|EFB87067.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139]
Length = 331
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G +
Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Azoarcus sp. BH72]
gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Azoarcus sp. BH72]
Length = 363
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 112/339 (33%), Positives = 165/339 (48%), Gaps = 7/339 (2%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
+ T+ NP V C++V+DG ++G G G HAEV AL AGE A GATAYVTLEPC
Sbjct: 20 NGLCTTTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGERAAGATAYVTLEPC 79
Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFL 138
SH+GR+PPC + ++ G+RRVV ++DP+ V+G GL L GI +ESE +
Sbjct: 80 SHFGRTPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELN 139
Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
+++R R + LK A + D +A S ITG +++ H RA++ AIL GIG
Sbjct: 140 IGFISRMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIG 199
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIVTENDDPVLA 257
TV DDP+LT R E P+R+++D ++ +++I +L I L
Sbjct: 200 TVREDDPQLTVRGVP-CERQPLRVVVDARLEIGREARILQGAPVLIATAIEEGERAAELR 258
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A + L LL L RG+ L VE G + S + VD ++LY +
Sbjct: 259 AAGHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLYMAP 318
Query: 318 IVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
+++G+ L G D +
Sbjct: 319 MLVGDSAQGMFNLSALTSLDQALRLDIRDMRRIGEDFRV 357
>gi|254796854|ref|YP_003081691.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
Illinois]
gi|254590091|gb|ACT69453.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str.
Illinois]
Length = 359
Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 168/352 (47%), Gaps = 18/352 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE AL+ AG +ARGA
Sbjct: 1 MEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
Y TLEPC+H+GR+ PC II GI+ V + DPD RV+G+G+Q L + GI+V +
Sbjct: 61 DLYTTLEPCAHHGRTAPCTDLIIGSGIKNVFIGTRDPDTRVNGKGIQKLRESGIVVTTGI 120
Query: 131 ESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + + +TLK A + D I S IT + VH+LR
Sbjct: 121 LKRECCISNIGYFYRQVFGKPFVTLKTATTLDGKIACFNGKSTWITSPALRRTVHMLRRI 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
S ++++ T+ DDP+L+CRL G+++ S ++ S + KI I+ +
Sbjct: 181 SSSVMISYSTLKHDDPQLSCRLPGVKKESIKVVLDTRGEISSPNFKIFNDG-----IVWS 235
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ + DL +L L G+ S+LVE G + SF+N L D
Sbjct: 236 FGKKNTFKHKNFFNFEANLNGEKLDLGDILQQLGTMGINSVLVECGGKLFSSFVNGNLFD 295
Query: 310 SIILYRSQIVIGEGGI----------PSPLEEGYLEKNFMCV--RRDYFGSD 349
II +RS V G + PS + ++F +D
Sbjct: 296 QIIWFRSNKVAGGDALSCCSNLNFDHPSKFIKLRKTNEIKIHDESVEFFAND 347
>gi|332519663|ref|ZP_08396127.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
gi|332044222|gb|EGI80416.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4]
Length = 321
Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 150/350 (42%), Gaps = 39/350 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M A++ + +G T NP V +IV + I+IG G T+ G HAEV A+ + +
Sbjct: 1 MQRAIQIANNGLGTTRPNPMVGAVIVHNNIIIGEGFTSAYGGNHAEVNAINAVKNKDLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127
+T YVTLEPCSHYG++PPC+ II I VV+ D + V+G+G++ L V
Sbjct: 61 KSTLYVTLEPCSHYGKTPPCSDLIIHHNIPNVVIGCVDDNPEVAGKGIKKLMGANCKVTL 120
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVH 184
++E++ K + T +KR +I LK A + + I IT IS+ VH
Sbjct: 121 GILENKCKEHHKRFFTFHNKKRPYIILKWAETSNGYIAPKTRTEQKPVWITNKISRQLVH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RAQ AILVG TV+ D+P L R +
Sbjct: 181 KWRAQEQAILVGTTTVIKDNPTLNVR--------------------------DWSGNNPT 214
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I++ +N+ + ++ + L + + S+++EGGA FIN
Sbjct: 215 RIVLDKNNLLSKEYTIFNNEAETFTIKAQTANEICSFLFKQTINSVIIEGGAKTLQLFIN 274
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
L D +++ I GI +P G + +D L Y
Sbjct: 275 ENLWDEARVFKGNITF-TDGIKAPNFSG------ELKAEETILNDTLLTY 317
>gi|314982172|gb|EFT26265.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL110PA3]
gi|315090403|gb|EFT62379.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes
HL110PA4]
Length = 331
Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 31/331 (9%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+
Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLTRQ 145
PC+ +++ GI RVV+ DP+ V+ G QWL G+ V + SE L+ + Q
Sbjct: 84 PCSHALVDAGIARVVIAQSDPNP-VASGGEQWLRTHGVEVVTGVLSEEATALNADWTFSQ 142
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P
Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT R + + ++ V +P R +
Sbjct: 203 RLTVR---------LPGVTHQPLRV-----------------VVGMREPPAGCHLRDDSA 236
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G +
Sbjct: 237 STLHIPSHDPAEVLDLLCCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296
Query: 326 PSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ +F+ G D+ +
Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327
>gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 21/369 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+SS D + + A + GLT+ +P+ C+I +G G G AEV A+E
Sbjct: 34 LSSDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGPKSVGEGFLYAQGTKSAEVLAVER 93
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+ ATAY+ LEP +G + + + G+ RVV+ + P + G+ + L Q
Sbjct: 94 AGELAKNATAYLNLEPGDCHG-DASAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQG 152
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-------------RSHITLKIAVSQDNMIGMAGC 169
G+ V+ ++ + + + + LK A++ D I +
Sbjct: 153 GVHVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVDGKIATSTG 212
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
S ++ S+ +V RA+SDA++VG TV D+P LT R G P+RI++
Sbjct: 213 HSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEGGNL--PVRIVMSRCLN 270
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
L D+ + + +++ + +P K + ++ D + ++ RG S
Sbjct: 271 LPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEHCYDRGFLS 330
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRD 344
+L E G +A I S + ++ + S +IG P+P+ E V +
Sbjct: 331 VLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQALQLSDVAFE 390
Query: 345 YFGSDVCLE 353
G D+ +
Sbjct: 391 QIGPDMLMT 399
>gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
WGA-A3]
gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp.
WGA-A3]
Length = 362
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 17/341 (4%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS-PPC 88
V +IV DG V+G G G PHAE+ AL +A +RGAT Y TLEPC H + PPC
Sbjct: 1 MVGAVIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEPCCHTNKRTPPC 60
Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL-TRQVE 147
I+ G+RR+V+ + DP+V+V+GRG++ L + G+ VD + L+
Sbjct: 61 VPAILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQLNEVYLHWMKT 120
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
KR + LK A++ D I A S ITG ++ VH LR+Q D I VG+ TVL DDP+L
Sbjct: 121 KRPFVVLKAAMTLDGKIATASGESQWITGAKARAHVHQLRSQVDVIAVGVETVLKDDPQL 180
Query: 208 TC-----RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-----ENDDPVLA 257
T + + P+R+I+D + +++++ AP +I T L
Sbjct: 181 TVRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIEQAPTVIATTKLAGPRKVERLR 240
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + + L K L L G+ S+L+EGG+ + +F+ + LV+ + LY +
Sbjct: 241 KMGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGSELNAAFLRAGLVNRVALYVAP 300
Query: 318 IVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCLE 353
++G L + ++ G D+ +
Sbjct: 301 SLLGGQLTKGLLGGPSPGRLAEILPVSNLQVQTLGEDMLVT 341
>gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis]
gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis]
Length = 600
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 96/369 (26%), Positives = 167/369 (45%), Gaps = 19/369 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA F+ A + G TS +P+ C+I G V G G G AEVQA+E AGE
Sbjct: 37 DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
++GATAY+ LEP +G +++ GI RVVV + P + G + L G+
Sbjct: 97 WSKGATAYLNLEPGDCHG-DHTAVSSLVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155
Query: 126 VD-----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
V+ + + R + LK A++ D I + + +
Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVLKYAMTLDGKIAASSGHAAWV 215
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+ S+N+V LR++SDAI+VG TV D+P LT R G E+ PMRI++ L ++
Sbjct: 216 SSRKSRNRVFELRSRSDAIIVGGNTVRRDNPRLTARHGG--EYMPMRIVMSQTLDLPEEA 273
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ ++ +++ K + ++ + + ++++ RG S+L E
Sbjct: 274 NLWDVCDVSTIVVTQRGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWEC 333
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G +A S I++ ++ + + + +IG PSP+ E + + + DVC E
Sbjct: 334 GGTLAASAISAGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMTQALDLV----DVCYEQ 389
Query: 355 IGKNLCLQE 363
+G ++ +
Sbjct: 390 VGPDMLISG 398
>gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
Length = 388
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/356 (30%), Positives = 161/356 (45%), Gaps = 8/356 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL
Sbjct: 3 TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 62
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L
Sbjct: 63 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAA 121
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + ++A T R + K A + D I S IT ++
Sbjct: 122 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA +DA+++G GT+ DDP+L R P+R++LD ++ ++++ A
Sbjct: 182 DVHRLRAGADAVVIGSGTLRTDDPQLAVRGIE-GAVQPLRVVLDSRATVTPAARVLDDAA 240
Query: 242 LAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + D L + DL LL L RGV S+L+EGG +A
Sbjct: 241 PTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAG 300
Query: 301 SFINSRLVDSIILY---RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+F+ +R VD +I Y + + G D+ +
Sbjct: 301 AFVAARAVDKVIGYLAPALLGAGPAALGGAGISTIGEALRLDLTESVRIGPDLRIT 356
>gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus
ATCC 27064]
Length = 449
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/356 (30%), Positives = 161/356 (45%), Gaps = 8/356 (2%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL
Sbjct: 64 TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 123
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L
Sbjct: 124 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAA 182
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + ++A T R + K A + D I S IT ++
Sbjct: 183 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 242
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA +DA+++G GT+ DDP+L R P+R++LD ++ ++++ A
Sbjct: 243 DVHRLRAGADAVVIGSGTLRTDDPQLAVRGIE-GAVQPLRVVLDSRATVTPAARVLDDAA 301
Query: 242 LAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + D L + DL LL L RGV S+L+EGG +A
Sbjct: 302 PTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAG 361
Query: 301 SFINSRLVDSIILY---RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+F+ +R VD +I Y + + G D+ +
Sbjct: 362 AFVAARAVDKVIGYLAPALLGAGPAALGGAGISTIGEALRLDLTESVRIGPDLRIT 417
>gi|302345996|ref|YP_003814349.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
ATCC 25845]
gi|302150238|gb|ADK96500.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
ATCC 25845]
Length = 372
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/378 (23%), Positives = 144/378 (38%), Gaps = 29/378 (7%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A
Sbjct: 1 MKQEKTDEKYMRRCLQLARNGQQLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG
Sbjct: 61 FASVRKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
++ + + GI V + E E ++T KR ++ LK A ++ +
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAETESRLTNTPFNTPASP 180
Query: 175 TGFISKNQVHLLRAQSDAIL---------VGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
+ ++ + V T + + + + +
Sbjct: 181 SPLPLPHREGSNHRDTPNDASIINGSKDDVTTCTNNSAVAYIGNLPDKDYQPLIISTPFT 240
Query: 226 PHFKLSLDSKIIKTALLAPV-------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+ ++ + + V E P + L
Sbjct: 241 KMLVHKMRAENDAILVGKTTEELEQPQLTVREWSGPSPEKLVLTSQPTKAGEYATPAEVL 300
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ + SL+VEGGA SF+++ L D I + + + EG +E L +N
Sbjct: 301 SHLYAEKK-QSLIVEGGAKTLQSFLDAGLWDEIRIESAPFTVNEG-----IEAPKLPENI 354
Query: 339 MCVRRDYFGSDVCLEYIG 356
++ + + + + Y
Sbjct: 355 RVIKVEKY-VNTIVTYER 371
>gi|323138569|ref|ZP_08073637.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
gi|322396203|gb|EFX98736.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242]
Length = 376
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 139/366 (37%), Positives = 191/366 (52%), Gaps = 12/366 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D FM+AAL R ++G T+ NP+V L+V+DGI+I RG TA GG PHAE AL AG
Sbjct: 11 ATDEAFMAAALALGRRNMGRTAPNPAVGALVVRDGIIIARGWTAKGGRPHAEAIALAAAG 70
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+G +PPC II GI RVV ++DPD RV+GRG Q L GI
Sbjct: 71 EAARGATLYVTLEPCSHHGSTPPCVDAIIASGIARVVTAMEDPDPRVAGRGHQILRDAGI 130
Query: 125 IVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIG-MAGCGSVPITGFISKNQ 182
V E+ H R + R +TLK+A + D A + ITG I+
Sbjct: 131 DVFIGPEAAAARADHLGHILRVTKHRPMVTLKLAQTPDGYAAGAAHDPRLRITGPIADAF 190
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H+ RA DAI+VG GT DDP +T RL GL+ +P+R++LD LS S++ T+
Sbjct: 191 THVHRALHDAIMVGAGTAREDDPLMTVRLPGLEGVTPLRVVLDEKLALSPRSRVASTSRE 250
Query: 243 APVIIVTENDDPVLALAFRKK------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
P++++T D P + +Y DL L +L RG+T + EGG
Sbjct: 251 TPLLVITALDVPDADVHRFMDATGAEVVKVPMYEGKLDLLAALRLLAERGITRVFSEGGP 310
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352
VA S + + L D +IL+ +G G P+ + + + G+D
Sbjct: 311 RVAESLLTAGLADEVILHMGVKPLGRPGQPALTPKARTALENVSRYRLIESRMLGADQMT 370
Query: 353 EYIGKN 358
Y +
Sbjct: 371 RYARAD 376
>gi|212702196|ref|ZP_03310324.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
gi|212674401|gb|EEB34884.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098]
Length = 380
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/368 (21%), Positives = 132/368 (35%), Gaps = 22/368 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
FM AL + NP+V ++V+DG V+ RG G PHAEV+ L +A G +
Sbjct: 9 FMREALTLAENGRWSACPNPTVGAVLVRDGQVVARGWHHAAGQPHAEVECLRDAQRQGID 68
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
T VTLEPC+HYG++PPC++ ++ GI+RVV+ + DP + +G G + L G+ V
Sbjct: 69 PAQCTLVVTLEPCNHYGKTPPCSEAVLAAGIKRVVIGLYDPTPKAAG-GAERLRAAGVEV 127
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + A + R ++ LK+A + D I S ++ S+ VH L
Sbjct: 128 IGPVCEQECRDQVADFLAWQQGRPYVILKMAATMDGRIATRTGHSRWVSSEGSRALVHRL 187
Query: 187 RAQSDAILVGIGTVLADDP---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
RA + + + +L + I
Sbjct: 188 RAGIGRAGGAVLVGGGTFRADNPCLTARIPGETVEQQPLACVLTSRLPNPAGDIHLLKER 247
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----------CRDLKKLLTILVGRGVTSLLVE 293
P V A + + +L E
Sbjct: 248 PHQAVFLCSPAAAASTAAHALRQMGVRVLALGPGQRGCPDFPAMFHMLYEELHCPYVLCE 307
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGS 348
GG +A S + + D +L+ + ++G+ + + R
Sbjct: 308 GGGHLALSLLEAGFADEFLLHLAPRILGDNEAAPLFDGRSPLTMAEALDLRVCRTTLCDG 367
Query: 349 DVCLEYIG 356
DV L+
Sbjct: 368 DVHLQLRP 375
>gi|302517924|ref|ZP_07270266.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
gi|302426819|gb|EFK98634.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78]
Length = 364
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 107/349 (30%), Positives = 157/349 (44%), Gaps = 6/349 (1%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG
Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G + I ++
Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATGGADTQRAAGVDIEHGLL 130
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
E E A+LT R H+T K A S D A S IT ++ VH LRA
Sbjct: 131 EREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATC 190
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
DA+LVG GT DDP L R ++ + ++++ AP ++
Sbjct: 191 DAVLVGSGTARTDDPHLAVRGIPGAPQPLRVVLDTEGTAVRGGARVLDD--AAPTLVALA 248
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+D P A + DL LL L R V +L+EGGA +A +F+ + D
Sbjct: 249 DDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTDR 308
Query: 311 IILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++ Y + +++G G + + G D+ + +
Sbjct: 309 VVGYLAPVLLGAGPAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357
>gi|86142849|ref|ZP_01061288.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
MED217]
gi|85830881|gb|EAQ49339.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis
MED217]
Length = 343
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 22/353 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
MS L+ ++ +G T NP V +IV + +IG G G PHAEV A+ ++
Sbjct: 1 MSRCLQLAKNGLGNTYPNPMVGSVIVYEDRIIGEGWHQQAGQPHAEVNAVNSVNDQSLLD 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPCSH+G++PPC+ II GI++VV+ DP V+GRG++ L G V
Sbjct: 61 KATIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVIGTVDPFAEVAGRGIKKLIDAGCEVLV 120
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC-----GSVPITGFISKNQ 182
+ E E + + T +KR +I LK A S D I V IT SK
Sbjct: 121 GVLEQECQQLNKRFFTFHQKKRPYIILKWAESLDGFIAPEAKSRSSREPVWITNSYSKQL 180
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA+ +ILVG TV AD+P LT R + P RI+LD K+S +S++ +
Sbjct: 181 VHKWRAEEQSILVGTKTVEADNPSLTTRDWSGKS--PTRIVLDRELKISEESRVFDESAT 238
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + + + ++L L G+ S+++EGG+ +F
Sbjct: 239 TLVF------TEKTKESTSSTKYITVDFNKNLITEVLQTLYKEGLQSVIIEGGSTTLQNF 292
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
I+ L D +++ + GI +P +R D + Y
Sbjct: 293 IDQELWDEARVFKGKQNF-HNGISAPKLSNAQP-----IRSSQLTGDHLVYYT 339
>gi|149914282|ref|ZP_01902813.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
gi|149811801|gb|EDM71634.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b]
Length = 365
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 136/363 (37%), Positives = 196/363 (53%), Gaps = 10/363 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+S DARFM+ AL R G NP+V C++V++G V+GRG T GG PHAE QAL
Sbjct: 1 MSRDDARFMALALSLGRRGQGRCWPNPAVGCVVVREGRVVGRGWTGVGGRPHAEPQALAR 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG ARGAT YV+LEPC+H+GR+PPC++ +I G+ RVV V D D RVSG+G L
Sbjct: 61 AGAAARGATVYVSLEPCAHHGRTPPCSEALIAAGVARVVAPVSDSDPRVSGKGFARLRSA 120
Query: 123 GIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + +E + +L R R H+TLK+A S D I A S ITG +++
Sbjct: 121 GIEVTTGVLAEEAMRDLGGFLRRAGGGRPHLTLKLATSLDGRIATASGHSQWITGPQARH 180
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +RA+ DA++VG GT ADDP LT R G P+RI++ L L S++ +TA
Sbjct: 181 AVHAMRARHDAVMVGAGTARADDPMLTVRGQGDVARQPVRIVVSRRLDLPLMSQLAQTAR 240
Query: 242 LAPVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
PV + D + + D++ +L L +G+T + EGG
Sbjct: 241 EVPVWLCHGPDPDAALADAWDGIGAERIACDLTGRQLDMEAVLLALGQKGLTRIFCEGGG 300
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352
++A S + + LVD ++L+ + ++IG G+PS L+ + F G+D
Sbjct: 301 SLAASLLGAGLVDELVLFSAGLMIGAEGLPSLGAMGLDRLDGAERFRLQELRALGNDAMS 360
Query: 353 EYI 355
+I
Sbjct: 361 RWI 363
>gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902]
gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. CC9902]
Length = 349
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 13/339 (3%)
Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G TS NP V +++ G ++G G A G PHAEV AL +AG+ A+G T VTLEPC H
Sbjct: 13 GHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKGGTLVVTLEPCCH 72
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
+G +PPCA +++ GI RVV+ ++DPD RV+G G+ L G+ V + +F +
Sbjct: 73 HGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEVMSGVLQAEAVFQNRA 132
Query: 142 L-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R R TLK A+ D + S I+G +++ VH LR++SDA++VG GTV
Sbjct: 133 FLHRVRTGRPWGTLKWAMGLDGRNALTNGESQWISGPMARQWVHQLRSKSDAVIVGGGTV 192
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
DDP LT R + E + + + + LAP ++ P
Sbjct: 193 RTDDPLLTSRGRRMPEPLRVVLSRSMEL---PELAQLWDTTLAPTLVAHG---PESQDRP 246
Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+ + + L+ L RG +L E G +A + I + + + ++
Sbjct: 247 FPSGPQRLLLSASEPEPLMQELANRGCNRVLWECGPELAAAAIRQGCIQDVAAVVAPKLM 306
Query: 321 GEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354
G +PL + V G D ++
Sbjct: 307 GGVPARTPLGDLGFTAMDQVVAGSFLSPVPLGDDWLFQF 345
>gi|88803651|ref|ZP_01119175.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
gi|88780384|gb|EAR11565.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P]
Length = 354
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 103/361 (28%), Positives = 177/361 (49%), Gaps = 20/361 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--G 64
+++ L+ ++ +G T NPSV +IV G+++G G TA G HAEV A+
Sbjct: 4 HEQYIQRCLQIAKNGIGTTRPNPSVGAVIVCKGVIVGEGFTAAYGGNHAEVNAVNSVEHK 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ +T YVTLEPCSH+G++PPCA II+ I+RVV+ D + V+G+G++ L G+
Sbjct: 64 KLLVESTLYVTLEPCSHFGKTPPCADLIIKYNIKRVVIGCVDTNSLVAGQGIERLKSAGV 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISK 180
+V + E+E + + Q +KR +I LK A ++D + I+ S+
Sbjct: 124 VVTVGVLEAECRKHHKRFFVVQEKKRPYIILKWAETKDGFVAPLSKDAVAPKFISNRYSQ 183
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH LR+Q AILVG TVL D+P+L R ++P+R++LD + + + +
Sbjct: 184 QLVHKLRSQEHAILVGKNTVLEDNPKLNVR--SWSGNNPIRVVLDSALGIPESAHVFDGS 241
Query: 241 LLAPV----IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ V I E + I +++ +L+ V SL+VEGG
Sbjct: 242 ITTIVITGKIHGHEEVKTKKYAFNKNLIFEPIDFSKNVAEQICVVLLKHQVQSLIVEGGT 301
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+FI+ L D +++ G+ + ++ L+KN+ +++ D+ +Y
Sbjct: 302 QTLATFISENLWDEALVFV-----GDHSFDAGVKAPRLDKNYK---KEHVLEDLIKKYTN 353
Query: 357 K 357
Sbjct: 354 D 354
>gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
acidaminovorans]
gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas
acidaminovorans]
Length = 368
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 115/361 (31%), Positives = 187/361 (51%), Gaps = 15/361 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
++M A++ + G S NP V +IVK+ VI G T G H+E+QAL++AG++A
Sbjct: 7 KQYMQRAIKVAEKARGKCSPNPFVGSVIVKNNQVISEGWTLEYGSDHSEIQALKKAGKKA 66
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
+ AT +VTLEPCSHYG++PPCAQ II+ GI+ V + + DP+ V G+G+ L + GI V
Sbjct: 67 KDATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLKEAGIDVH 126
Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E + + L YL ++R +TLK A++ D + ITG ++ H L
Sbjct: 127 YGFLEEKIRTQLECYLCYIQKERPFVTLKTALTLDGKYAAEDGTAHWITGKKAREYAHQL 186
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R+++D +L GI T+L DDP L RL G + P+R++LDP+ K+ + S + + P +
Sbjct: 187 RSENDVVLTGIMTILFDDPRLNVRLPGNYK-QPLRVVLDPYLKIPVLSYFVSISAKFPGM 245
Query: 247 IVTENDDPVLALAFRKKNIN------IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++T D+ A + +L ++L +L S+L+E G+ +A
Sbjct: 246 VITSPDNLQTDKADILRQKGVKIEALETKDGHFNLHEVLNLLYKMNYYSVLLETGSGIAE 305
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYI 355
+F+ L+D II ++G G SPL +E + + +DV +
Sbjct: 306 AFLKEELIDKIIFIYGAKILG--GTKSPLPNLGIESIYKALYIWKTSCRKIENDVVVTAY 363
Query: 356 G 356
Sbjct: 364 P 364
>gi|296283379|ref|ZP_06861377.1| riboflavin-specific deaminase/reductase [Citromicrobium
bathyomarinum JL354]
Length = 323
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 126/357 (35%), Positives = 168/357 (47%), Gaps = 47/357 (13%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M + + DAR++SAA R S ++ NP+V C+IV+ G V+GRG T GG PHAE A
Sbjct: 1 MTIKTPSDARWLSAAARLSLRGRPASAPNPAVGCVIVQAGRVVGRGWTQAGGRPHAEAMA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
LE AG+ A GA Y TLEPC+H P C +IE RVV+ DPD R +G+G++
Sbjct: 61 LEMAGDAATGADVYATLEPCAHQSPRGPACTDRLIEARPARVVIGQIDPDPRTAGQGIER 120
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
L GI + L YLTR R H+TLK+A+S D I +A S ITG
Sbjct: 121 LHAAGIDAVLLDCPHSAASLAGYLTRAALGRPHVTLKLAMSLDGCIALADGTSQWITGEA 180
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
++ VH RA +DAILVG GT AD P L R+ GL++ SP R +L
Sbjct: 181 ARAHVHSRRALADAILVGGGTWRADSPRLDVRVPGLEDRSPARWVLTSQ----------- 229
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P+ PV L VEGGA
Sbjct: 230 -----PIEGAQTIAAPVDIATIPA-------------------------QYLYVEGGAQT 259
Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
A SF+ + LVD + +YR+ I+IG+G G + E + + V G+D
Sbjct: 260 AASFLEADLVDRLEIYRAPILIGDGLRALGGLNLAELAHAHGRWQPVETRQLGADTF 316
>gi|46579612|ref|YP_010420.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449027|gb|AAS95679.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233416|gb|ADP86270.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris RCH1]
Length = 377
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/368 (22%), Positives = 135/368 (36%), Gaps = 22/368 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
FM A+ + + NP+V ++V+DG V RG G PHAEV+ L +A G +
Sbjct: 8 FMREAIALAERGRWYAAPNPTVGAVLVRDGEVAARGWHTGYGKPHAEVECLRDAASKGVD 67
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
T VTLEPC+H+G++PPC+ I+E GI RVVV + DP+ V+ G ++L G+ V
Sbjct: 68 PAHCTLVVTLEPCNHHGKTPPCSHAIVEAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126
Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK--NQV 183
D + + L +LT ++ ++ LK+A + D I S I+G ++
Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGAEARAAVHE 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
R V +G + + + + + +
Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHVPHHDALPRIFRER 246
Query: 244 PVIIVTENDDPVLALA----------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
P V D L + GV +L E
Sbjct: 247 PGQCVVWTDSTGAGTEAADALRTSGVCIMALPLTPSGRLDLRAGLTRLRADHGVEHVLCE 306
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGS 348
GG +A S + + LV L+ + +IG+ + + G
Sbjct: 307 GGGKLALSLLEAGLVGEFHLHMAPKIIGDAEAALLFDGRAPLHMDEALRLRMTGIERRGD 366
Query: 349 DVCLEYIG 356
D +
Sbjct: 367 DCIMILRP 374
>gi|304570589|ref|YP_388926.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 373
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 88/372 (23%), Positives = 145/372 (38%), Gaps = 19/372 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P SS FM A+ + TS NP V ++VKDG + RG G PHAE++ L
Sbjct: 6 PFSS----FMLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLR 61
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+A G T VTLEPC+H G++PPC+ +++ GIR VVV + DP+ G
Sbjct: 62 DAARRGVNPAECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQGGANFL 121
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ + E + + ++T + + +K+A + D I S I+G
Sbjct: 122 RENGVTVETGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEE 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ +VH LR +DA++VG GT AD+P+LTCRL G++ ++ +++
Sbjct: 182 SRRRVHELRRHADAVIVGGGTFRADNPQLTCRLEGIRRQPLAVVVTSQLPDAGAPMHLLQ 241
Query: 239 TALLAPVIIVT-------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ + D L + L
Sbjct: 242 QRPHETIFWTPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTL 301
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYF 346
EGG +A S + + + L+ + ++ + +
Sbjct: 302 CEGGGMLALSMLEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQALGLRICNVARS 361
Query: 347 GSDVCLEYIGKN 358
G DV L +
Sbjct: 362 GEDVILTLRPRK 373
>gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
44233]
gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM
44233]
Length = 366
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 104/361 (28%), Positives = 155/361 (42%), Gaps = 33/361 (9%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A + + NP V C+++ G +G G G PHAEV AL AG ARG T
Sbjct: 16 RAAELAEYGAATALPNPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALTAAGPLARGGT 75
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV----- 126
A V+LEPC+H GR+ PC+Q +I G+ RV+V V DP +G G+ L Q G+ V
Sbjct: 76 AVVSLEPCNHTGRTGPCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQAGVQVVDLPS 134
Query: 127 -------DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ +L R +T K+ ++ D + A S IT S
Sbjct: 135 LAGQDPAAAAAVEHAQDVNRVWLAAMRHGRPFVTWKVGMTIDGRVAAADATSRWITSPQS 194
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDP--ELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ VH LRA+ D I+VG+GTVL DDP + P+R+++D + ++++
Sbjct: 195 RADVHALRARVDTIMVGVGTVLDDDPALTVRDDQGEPVGRQPLRVVIDSSGRTPAQARVL 254
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
A + DL +L L RG +L+EGG
Sbjct: 255 DDAAPTWLATAESAG--------------TGADGRVDLAAVLAELWRRGRRHVLLEGGPH 300
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A SF+++ LVD ++ Y + ++G G + V FG DV L Y
Sbjct: 301 LAASFLDAGLVDEVVAYVAPTLLGAGPSALSGGAVGTLSDAHAAELVDLTRFGPDVRLRY 360
Query: 355 I 355
Sbjct: 361 R 361
>gi|288803443|ref|ZP_06408875.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
D18]
gi|288334053|gb|EFC72496.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica
D18]
Length = 365
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 89/371 (23%), Positives = 140/371 (37%), Gaps = 22/371 (5%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A
Sbjct: 1 MKQEETDEKYMRRCLQLARNGQLLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG
Sbjct: 61 FASVSKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVS--------QDNMIGM 166
++ + + GI V + E E ++T KR ++ LK A +
Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAEASSPSPLPLPQREGSN 180
Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226
I+ + + + + P + + ++
Sbjct: 181 HRDSPNNSEKVIANITIENRNNRIYCNYKPSVAYIGNLPGKDYQPLIISTPFTKMLVHKM 240
Query: 227 HFKLSLDSKIIKTAL-LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+ T P + V E P + L + +
Sbjct: 241 RAENDAILVGKTTEELEQPQLTVREWSGPNPEKLVLTSQPTKAGEYATPAEVLSHLYAEK 300
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
SL+VEGGA SF+++ L D I + + + +G +E L N ++ +
Sbjct: 301 Q-QSLIVEGGAKTLQSFLDAGLWDEIRIESAPFTVNKG-----IEAPKLPDNLRVIKVEK 354
Query: 346 FGSDVCLEYIG 356
+ + + Y
Sbjct: 355 Y-VNTIVTYER 364
>gi|195640478|gb|ACG39707.1| riboflavin biosynthesis protein ribD [Zea mays]
Length = 392
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 95/358 (26%), Positives = 155/358 (43%), Gaps = 19/358 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG
Sbjct: 47 DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI
Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E + AY+ R + ++ TL+ +S + +I S
Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIG----KGADQSGGYYS 222
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + D +++ L+ Q + + +L + S + A A
Sbjct: 223 QLMKEYDGVIISSDLAKMSALPLSREAGTNQPLCIIIAQGESS-RLHIPSLSQEHASRAI 281
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---AAV 298
V+ + + + DL+ +L +L RG+ S+LV E G A++
Sbjct: 282 VLADSPVTVEPAGVE-------VAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFASL 334
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ F +LV +++ + G+ + G + V LE
Sbjct: 335 LNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLEGYV 392
>gi|212275115|ref|NP_001130669.1| hypothetical protein LOC100191772 [Zea mays]
gi|194689788|gb|ACF78978.1| unknown [Zea mays]
Length = 392
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 95/358 (26%), Positives = 155/358 (43%), Gaps = 19/358 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG
Sbjct: 47 DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI
Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E + AY+ R + ++ TL+ +S + +I S
Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIG----KGADQSGGYYS 222
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + D +++ L+ Q + + +L + S + A A
Sbjct: 223 QLMKEYDGVIISSDLAKMSALPLSREAGTNQPLCIIIAQGESS-RLHIPSLSQEHASRAI 281
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---AAV 298
V+ + + + DL+ +L +L RG+ S+LV E G A++
Sbjct: 282 VLADSPVTVEPAGVE-------VAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFASL 334
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ F +LV +++ + G+ + G + V LE
Sbjct: 335 LNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLEGYV 392
>gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
Length = 369
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 108/360 (30%), Positives = 163/360 (45%), Gaps = 12/360 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
M AL + + L+S NP V C++V DG V+G+G T G PHAEV AL +A GE
Sbjct: 7 HMHQALGLAAQALFLSSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGE 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
+ RGATAYVTLEPCSH GR+ PC +I G+ +VV + DP+ +V+G+G L G
Sbjct: 67 DVRGATAYVTLEPCSHQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVD 126
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V E + + +R + + +K A S D + S IT ++ H
Sbjct: 127 VVVGPGADESRELNIGFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGH 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ +L GIGTVL DDP L R + ++D + L ++ ++
Sbjct: 187 AWRARACTLLTGIGTVLEDDPRLNVRDVATPRQPRI-AVVDSRLDMPLTARALQGPAECL 245
Query: 245 VIIVTENDDPVLALAF--RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ + + AL DL +L L RG L VE G + S
Sbjct: 246 IYTSSRDASKTSALQDLGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNGSL 305
Query: 303 INSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ LVD ++LY + ++G GG+ PL+ G D+ + +
Sbjct: 306 VREGLVDELLLYLAPKLLGTGGMGIASFGPLDALSEALALALHDVQRIGPDLRVVARVVD 365
>gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
Length = 416
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 113/370 (30%), Positives = 167/370 (45%), Gaps = 32/370 (8%)
Query: 19 RWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYV 74
GLT NP V C+IV G ++G G T G PHAEV A+ AG GATAYV
Sbjct: 37 EQGFGLTEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYV 96
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
TLEPC+H+GR+PPCA +IE G++RVV + DP V+G+GL L+ GI V++ + +E
Sbjct: 97 TLEPCAHHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEA 156
Query: 135 KIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
++ +V +R + +K+A S D + S ITG ++ H R ++ A+
Sbjct: 157 ATAINIGFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAV 216
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
L GIGTVL DDP L R PMR+++D + + ++++ V +
Sbjct: 217 LTGIGTVLDDDPRLDVRHVP-TPRQPMRVVVDAPLRTPVTARLLAPPGEVLVYTSADETA 275
Query: 254 PVLALAF-----------------------RKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
LA + ++ DL +L L RGV L
Sbjct: 276 QAAWLAEVQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVNEL 335
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347
VE G + S + LVD ++Y + ++G G PLE G
Sbjct: 336 HVEAGHRLNGSLLREGLVDEFLVYLAPKLLGLGREMWSWGPLESLDQAIELEWGDVQSVG 395
Query: 348 SDVCLEYIGK 357
D+ L +
Sbjct: 396 GDLRLLARPR 405
>gi|242042489|ref|XP_002468639.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
gi|241922493|gb|EER95637.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor]
Length = 396
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 88/359 (24%), Positives = 152/359 (42%), Gaps = 19/359 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
DA++M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG
Sbjct: 50 DLDAQYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAG 109
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI
Sbjct: 110 NLAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGI 169
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E + AY+ R + ++ TL+ +S + ++ +G
Sbjct: 170 NVRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIVTNQIGKGADQSG---GYYS 226
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
L++ I+ ++ P + + + + S +
Sbjct: 227 QLMKEYDGVIISSDLAKMSSLPLSREAGANQPLYIIIAQGENSRLHIPSLS----EEHAS 282
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGAA 297
VI++ ++ + I + +L +L RG+ S+LV E A+
Sbjct: 283 KVIVLADSPVTAAPAGVEVAVLRQIDLES-----ILQLLAQRGLCSVLVDFREATESFAS 337
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + F +LV +++ G+ + G + V +E
Sbjct: 338 LLNDFQEDKLVQKVVVEILPFWFASEGLSNLAFGGSQSFPLKNLEHREVNGGVLMEGYV 396
>gi|259502164|ref|ZP_05745066.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
gi|259169782|gb|EEW54277.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041]
Length = 352
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 101/356 (28%), Positives = 157/356 (44%), Gaps = 9/356 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL-EEAGE 65
D M A+ ++ T NP V ++VK+G V+ G T G HAE AL A
Sbjct: 3 DETLMERAVAAAKQAGAATWRNPQVGAVVVKNGHVLATGHTQPYGGSHAERDALSRLAPG 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
+A GAT YVTLEPC+HYG+ PPC Q II GIRRVVV DP V+G+G+ L Q G
Sbjct: 63 QAAGATLYVTLEPCNHYGKQPPCTQLIINSGIRRVVVAQLDPHALVTGKGVANLRQHGIE 122
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V + + Y R +TLK A+S D + IT +VH
Sbjct: 123 VVTGVGAQQAAQVNPHYDFFYRHHRPWVTLKQALSLDGRVSAGPGQRTAITNQAVYRRVH 182
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA I++G T + DDP L + + + D ++ L
Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTLLPSVQLAHLPIRIVLDRRGRLADYPDLRLFNDGLAPT 242
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ P ++ + ++ +L GV SL VEGG + ++F
Sbjct: 243 WVFTENAALPDRLGP----WARVLVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNAFAR 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-EYIGKNL 359
+ LV+ ++ Y S +++G+ G+P + F + + G++V + E +++
Sbjct: 299 AGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRIAERERQDV 352
>gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
ATCC 27064]
gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus
ATCC 27064]
Length = 379
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 109/349 (31%), Positives = 158/349 (45%), Gaps = 8/349 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I G + G G G PHAEV AL AG ARG
Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L G+ V+
Sbjct: 61 GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAAGVRVECG 119
Query: 130 MESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++A T R + K A + D I S IT ++ VH LRA
Sbjct: 120 LLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARADVHRLRA 179
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+DA+++G GT+ DDP+L R P+R++LD ++ ++++ A + +
Sbjct: 180 GADAVVIGSGTLRTDDPQLAVRGIE-GAVQPLRVVLDSRATVTPAARVLDDAAPTLIAVG 238
Query: 249 TENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
D L + DL LL L RGV S+L+EGG +A +F+ +R
Sbjct: 239 EGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVAARA 298
Query: 308 VDSIILY---RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
VD +I Y + + G D+ +
Sbjct: 299 VDKVIGYLAPALLGAGPAALGGAGISTIGEALRLDLTESVRIGPDLRIT 347
>gi|300727427|ref|ZP_07060836.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
gi|299775307|gb|EFI71906.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14]
Length = 320
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 107/360 (29%), Positives = 155/360 (43%), Gaps = 49/360 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M S D ++M + +R + NPSV +IV D +IG G T+ G PHAEV A
Sbjct: 1 MNQKSIDEKYMRRCIAIARNGLNSAKPNPSVGAVIVSADNRIIGEGYTSSYGGPHAEVNA 60
Query: 60 LEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
AT YV+LEPCSHYG++PPCA ++ G++R V DP V GRG
Sbjct: 61 FASVKPEDEHLLADATLYVSLEPCSHYGKTPPCADLVVRKGVKRCVCGCIDPFSEVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
++ L GI V + E E K + T + R +I LK A + + +G G + I
Sbjct: 121 IKKLRDAGIDVTVGVLEKECKASNKRFFTFNMLHRPYIILKWAQTINGFMG--GKDRLHI 178
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+ ++ VH LRA+ DAIL+G GT+ +D P+L R + +
Sbjct: 179 STPFTQMLVHQLRAECDAILIGRGTLESDHPQLNVRDWYGPSPERIVLS----------- 227
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
I + D+ +LT L SL+VEG
Sbjct: 228 -------------------------HNTDGIPEGFLAFTDIDSVLTHLYQEKKQSLIVEG 262
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + +FI + L D I + S I GI SP+ L + VR+ + + Y
Sbjct: 263 GAQILQAFIEAGLWDEIRIETSPFTI-TEGIKSPI----LPYSAQLVRQKMYDGNRISWY 317
>gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii]
Length = 561
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/373 (23%), Positives = 151/373 (40%), Gaps = 18/373 (4%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S+ FD+ M A + G T+ +P+ AC+I + V+G G AE+Q
Sbjct: 1 MAPSNAGFDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQ 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV--------- 109
A+E AGE +RGATAY+ LEP +G R VV
Sbjct: 61 AVEMAGELSRGATAYLNLEPGDCHGDDTAIKALKQSGVARVVVGLQHPLKHHSGKAIAAL 120
Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
R G + L + G + + L R LK A++ D I +
Sbjct: 121 RGLGIPVDVLEKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLDGKIAASTG 180
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
+ ++ +S+ +V R +SDAI+VG TV D+P LT R G P+R+++
Sbjct: 181 HASWVSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEGGHL--PVRVVMSRTLN 238
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
L L+ + + +++ + + ++ D K ++ RG S
Sbjct: 239 LPLELHLWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYERGFLS 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRD 344
+L E G A++ + + ++ +I + + +IG P+P+ E N + V +
Sbjct: 299 VLWECGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLDVTFE 358
Query: 345 YFGSDVCLEYIGK 357
G D+ + K
Sbjct: 359 QVGPDMLVSGYLK 371
>gi|160872316|ref|ZP_02062448.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
gi|159121115|gb|EDP46453.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli]
Length = 360
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 151/352 (42%), Gaps = 7/352 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EE 66
+++ AL + G S NP V ++VKD VI +G G PHAEV+A++
Sbjct: 6 RQYLELALSLAEIRRGFCSPNPCVGAILVKDNTVIAKGYHHASGLPHAEVEAIQSVNPVH 65
Query: 67 ARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+GAT YVTL+PC H ++PPC II+ GI +V+ DP+ VS L GI
Sbjct: 66 VKGATLYVTLQPCCHSAKKTPPCTDLIIKSGIVKVIYGFQDPNPAVSHHTDNLLKHAGIE 125
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ F +Y+ KR T K+A+S D I V +TG ++ H
Sbjct: 126 CIQHALPAIDNFYASYVYWWTCKRPFTTAKLALSLDGKIAGKNGKRVQLTGEKAQQFTHH 185
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R ++DAIL T+ DDP L RL+ P+ ILD H LS SKI ++A +
Sbjct: 186 HRKKADAILTTAKTISHDDPLLNSRLDHKIYKKPL-YILDTHLNLSTTSKIFESAASVTI 244
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT---SLLVEGGAAVAHSF 302
+ + I ++ L+ + G+ L VE G + +
Sbjct: 245 FHHSSVCKVYQFKEQQPDTRFIPIKHDKNGLNLIAVFDHIGLDGKIDLWVEAGGHLFQAL 304
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
I + L+ +Y + +GE + L+K G D C E+
Sbjct: 305 IQNNLLQHAFIYVAPRWLGENAQTAFHFPNPLKKGIPMKGIT-LGRDTCFEF 355
>gi|25028272|ref|NP_738326.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium efficiens YS-314]
gi|23493556|dbj|BAC18526.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium efficiens YS-314]
Length = 328
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 107/355 (30%), Positives = 149/355 (41%), Gaps = 35/355 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ A+ S VG TS NP V +I+ DG + G G T G HAEV AL AG
Sbjct: 4 EEALQLAIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHAEVMALAAAGPR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARG TA VTLEPC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G V
Sbjct: 64 ARGGTAVVTLEPCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--V 120
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
D + L +L R HITLK A + D S ITG ++ VH
Sbjct: 121 DTHLLGLPVPTLSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHAD 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + DAI+VG GT L D+P LT R R ++ + S + +
Sbjct: 181 RTRRDAIIVGTGTALTDNPSLTARGPAGLYDHQPRRVVIGRRPVPAGSNLDRLGFE---- 236
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + L L G +L+EGG +A + + +
Sbjct: 237 ------------------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAG 272
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCLEYIGKN 358
L+D+I Y + ++G G + G F G DV ++ K+
Sbjct: 273 LIDAIRAYVAPAILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 327
>gi|260593448|ref|ZP_05858906.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
gi|260534564|gb|EEX17181.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319]
Length = 331
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/363 (21%), Positives = 131/363 (36%), Gaps = 43/363 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M + D ++M L+ + + NP V +IV K+G +IG G G HAEV A
Sbjct: 6 MKQADIDEKYMRRCLQLAYNGMLKAKPNPMVGAVIVSKEGRIIGEGYHVQCGKGHAEVNA 65
Query: 60 LEEAGE----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
E AT YV+LEPCSHYG++PPCA II G+ RVV DP V GRG
Sbjct: 66 FASVKEVDSHLLHDATLYVSLEPCSHYGKTPPCADLIIRKGVHRVVCGCIDPFAEVHGRG 125
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+Q L GI V + K + +
Sbjct: 126 VQKLRDAGIEVTVGVLE----------------------KECLELNKRFIT--------- 154
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ + ++ +++ + + + + L L +
Sbjct: 155 -YNTHHRPYVILKWAQTMGNPAYIGYLPSKDYHPLNISTPFTKMLVHKLRAENDAILVGR 213
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
P + V E + + + +L L SL+VEGG
Sbjct: 214 TTNDL-EHPQLTVREWSGKNPEKIVLSQQKSTSSAQYPSPQSVLDHLYQEKKQSLIVEGG 272
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A+ SF+++ L D I + +++ + G+ +P + N R + + + + Y
Sbjct: 273 ASTLQSFLDAGLWDEIRVETGSLLV-DKGVKAP----QMPSNIHITRIEQWDDNKIVTYQ 327
Query: 356 GKN 358
+
Sbjct: 328 REE 330
>gi|170783175|ref|YP_001711509.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157745|emb|CAQ02947.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis
subsp. sepedonicus]
Length = 355
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 143/354 (40%), Gaps = 29/354 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
R M L + NP V C+I+ G VI G G HAEV AL +
Sbjct: 21 ERAMRRGLELAAEGPAW-GPNPRVGCVILDASGRVIAEGRHRGAGSAHAEVDALRQLPAG 79
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATA VTLEPC+H GR+ PCA ++E G+ RV V DP SG + + +
Sbjct: 80 GARGATAVVTLEPCNHTGRTGPCAAALVEAGVARVAYAVADPGAESSGGAARLRAAGVEV 139
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V ++ E FL +L R +T K A S D I A S ITG ++ VH
Sbjct: 140 VPGVLADEAAAFLQVWLGSASLGRPFVTAKWASSLDGRIAAADGSSRWITGTAAREDVHR 199
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA++DAILVG GTVLADDP LT R + + + D + +
Sbjct: 200 RRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRAIPDDAAVHRHPRRLI 259
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
D L L RG+ + VEGG + + + +
Sbjct: 260 -----------------------RLPGHDPAAALDELGNRGIRHVFVEGGPTIVSALLAA 296
Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD ++ Y + +++G + + + G D+ +
Sbjct: 297 GLVDEVVAYLAPVLLGGPRTATGDLGVPSMPDAHRLTLISTTRLGDDLLVIARP 350
>gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
cereus ATCC 14579]
Length = 302
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 108/295 (36%), Positives = 159/295 (53%), Gaps = 6/295 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+
Sbjct: 4 HELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQ 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI V
Sbjct: 64 VRGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEV 123
Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E E K + + KR +T+K V+ D I + S IT ++ +VH
Sbjct: 124 LVGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQ 183
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++
Sbjct: 184 IRNENAAILVGANTVQKDNPSLTTRIPN--GRNPIRIILDSTLRIPMEANVVTDGEAPTW 241
Query: 246 IIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
I T N +A K +L ++L +L +GV+SLLVEGG
Sbjct: 242 IFTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGR 296
>gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 579
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 20/365 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ DA F+ A + GLTS +P+ C+I G V G G G AE A+E A
Sbjct: 29 AIDAAFIRRAADLAEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 88
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE +RG+TAY+ +EP +G +++ GI RVVV + P + G ++ L +G
Sbjct: 89 GEFSRGSTAYLNMEPGDCHG-DHTAVSALVQAGIDRVVVGIRHPLQHLRGSAIRELRSQG 147
Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
I V+ + E + + R + LK A++ D I + +
Sbjct: 148 IEVNVLGEDFESKVLEEARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 207
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ +S+ +V LR SDA++VG TV DDP LT R H+P RI++ L
Sbjct: 208 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQ--GHTPTRIVMTQSLDLPE 265
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + A ++ +++ K + ++ D + ++++ RG S+L
Sbjct: 266 KANLWDVAEVSTIVVTQRGARKSFQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 325
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFG 347
E G +A S I+S ++ ++ + + +IG PSP+ + N + V + G
Sbjct: 326 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVG 385
Query: 348 SDVCL 352
D+ +
Sbjct: 386 PDMLV 390
>gi|163755421|ref|ZP_02162541.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
gi|161324841|gb|EDP96170.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1]
Length = 340
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 19/353 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68
M L+ + + NPSV +IV + ++IG G T+ G HAEV A+ ++ +
Sbjct: 1 MKRCLQLAANGLPTAMPNPSVGAIIVHNDMIIGEGYTSAYGGNHAEVNAVHSVKDKSLLK 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
AT YV+LEPCSH+G++PPC+ II+ I +VV+ DP +V+G+G++ L G V
Sbjct: 61 EATMYVSLEPCSHFGKTPPCSDLIIKHQIPKVVIGTIDPFAKVAGKGIEKLQNAGCEVIL 120
Query: 129 MMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGM-AGCGSVPITGFISKNQVHL- 185
+ + I + T KR ++ LK A +QD I +I+
Sbjct: 121 NVLKDECIASNKRFFTFHQHKRPYVILKWAETQDGFIDKIRQENDPVQPNWITNKFSRQL 180
Query: 186 -LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ +S+ + +GT A +P+RI+LD ++ + + +
Sbjct: 181 VHKWRSEETAILVGTNTAITDNPKLNTRDWHGKNPVRIVLDRSLRIPENYSLFDQTIKTI 240
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V+ E + I +++ +L + S+++EGG +F++
Sbjct: 241 VLTEVEKA------STENLIFETIDFSENLAQQICNVLFQHELQSVIIEGGKQTLQTFMD 294
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ L D +++ I+ + GI +P G + +
Sbjct: 295 ANLWDEARVFKGNILF-QQGIKAPKLTGNSS------SEKIILDNSLHIFYND 340
>gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii]
Length = 563
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 18/373 (4%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M S+ FD+ M A + G T+ +P+ AC+I + V+G G AE+Q
Sbjct: 1 MAPSNVGFDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQ 60
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV--------- 109
A+E AGE +RGATAY+ LEP +G R VV
Sbjct: 61 AVEMAGELSRGATAYLNLEPGDCHGDDTAIKALKQSGVARVVVGLQHPLKHHSGKAIAAL 120
Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
R G + L + G + + L R + LK A++ D I +
Sbjct: 121 RGLGIPVDVLEKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLDGKIAASTG 180
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
+ ++ +S+ +V R +SDAI+VG TV D+P LT R G P+R+++
Sbjct: 181 HASWVSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREGGHL--PVRVVMSRTLN 238
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
L L+ + + +++ + + ++ D K ++ RG +
Sbjct: 239 LPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYERGFLT 298
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRD 344
+L E G A++ + + ++ +I + + +IG P+P+ E N + V +
Sbjct: 299 VLWECGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLDVTFE 358
Query: 345 YFGSDVCLEYIGK 357
G D+ + K
Sbjct: 359 QVGPDMLVSGYLK 371
>gi|254495519|ref|ZP_05108443.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
gi|85819875|gb|EAQ41032.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152]
Length = 337
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 18/348 (5%)
Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73
+ ++ +G+T NPSV +IV +I G T+ G HAEV A+ ++ + AT Y
Sbjct: 2 QIAKNGIGVTRPNPSVGAVIVHQNKIIAEGFTSNYGGNHAEVNAIIAVKDKSLLKEATIY 61
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ES 132
VTLEPCSHYG++PPCA II+ +++VV+ D + V+G+G++ + + GI V + E
Sbjct: 62 VTLEPCSHYGKTPPCADLIIKHKLKKVVIGTLDTNSLVAGKGVERIEKAGIDVKVGVLEE 121
Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKNQVHLLRAQ 189
+ K + T Q +KR ++ LK A SQD I + I+ S+ VH LR++
Sbjct: 122 KCKKHHKRFFTSQNKKRPYVILKWATSQDGFIAPLKKEVQKPIWISNQYSQQLVHKLRSK 181
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AILVG T +AD+P+L R ++P+R++LD ++ + I ++ I
Sbjct: 182 EHAILVGTNTAIADNPKLNVR--SWSGNNPIRVVLDKSLRIENNLNIYDNSVKTIFITEK 239
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
E + + I+ + +L + S+++EGG +FI+ L D
Sbjct: 240 EVHNCGDESNIIFEKIDFKQKIAEQVLAVLQKH---NIQSVIIEGGTQTLQTFIDENLWD 296
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++ + + GI +P+ G + + +D Y
Sbjct: 297 EAFVFTGDVCL-NDGIKAPVFGG------QIIHQQEIKNDTLKIYKND 337
>gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Streptomyces venezuelae ATCC 10712]
Length = 417
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 115/356 (32%), Positives = 166/356 (46%), Gaps = 11/356 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M A+ + +G TS NP V C++ G +G G G PHAEV AL EAG
Sbjct: 66 DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARG TAYVTLEPC+H GR+ PCAQ +IE GI RVV V DP+ + +G G L G+
Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNPQATG-GADTLRAAGVD 184
Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + ++ A+LT R + K A + D I A S IT S+ VH
Sbjct: 185 VRQGLLEDEAEAVNLAWLTSVRRGRPFVRWKYAATLDGRIAAADGTSRWITSAESRADVH 244
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LRA++DA++VG GT DDP L R P+R+++D +
Sbjct: 245 RLRAEADAVVVGSGTARTDDPHLAVRGID-AAVQPLRVVVDTEATAVKAGARVLDDAAPT 303
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+I V E+ A + LL L RGV S+L+EGG +A +F+
Sbjct: 304 LIAVAEDA----DTALTDVVRLPRAERGLSVPALLDALHARGVRSVLLEGGPTLAGAFVA 359
Query: 305 SRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ VD ++ Y + +++G G + + G+D+ + K
Sbjct: 360 AGAVDQVVGYLAPVLLGAGPNALAGAGISTITDALRLDITETVRVGTDLRITATLK 415
>gi|260655866|ref|ZP_05861335.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
E1]
gi|260629482|gb|EEX47676.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33
E1]
Length = 358
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 119/357 (33%), Positives = 170/357 (47%), Gaps = 13/357 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL + G TS NP V C+IV+DG VI G G PHAE AL AGE A GA
Sbjct: 1 MRMALSLAARGAGTTSPNPMVGCVIVRDGHVIATGWHRAPGAPHAEAAALAAAGERAEGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
T YV LEPC+H GR+PPCA ++ + RVV + DP +V+G+G+ L + GI VD +
Sbjct: 61 TVYVNLEPCAHQGRTPPCAPALVSAKVVRVVAGLVDPFPQVAGKGIGILREAGIEVDCPV 120
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E +L+ KR +TLKIA S D + + S ITG ++ HLLR++
Sbjct: 121 LAEESAWLNRGFLSAVKRKRPWVTLKIASSLDGITALPDGTSQWITGPTARKLGHLLRSE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DA++VG T D P L R P+ + D S + +
Sbjct: 181 NDAVMVGGTTARRDKPRLDVRDVDGPSPRPVVVSRD-------FSAAMLLPRSGDALAYA 233
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ P+ + DL +L L RGV LLVEGG +A S + LVD
Sbjct: 234 ADGCPIPDKLKGRAATVPTGPGGLDLSAVLADLCRRGVNRLLVEGGGTLASSLLQEGLVD 293
Query: 310 SIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRR--DYFGSDVCLEYIGKNLCLQE 363
+ ++++ V+G+G G+ L L + VR D+ +E + + C Q+
Sbjct: 294 QLSVFQAPCVLGKGTGMAQELLTESLLARWNFVRTAERRVDDDLWIEGV--SPCSQD 348
>gi|332291081|ref|YP_004429690.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
4H-3-7-5]
gi|332169167|gb|AEE18422.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus
4H-3-7-5]
Length = 333
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 98/367 (26%), Positives = 165/367 (44%), Gaps = 42/367 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + +++ + ++ + + NPSV ++V + +I G T+ G PHAEV +
Sbjct: 1 MKI---HNTYINRCIALAKNGLPVAMPNPSVGAVLVHNNKIIAEGYTSDYGGPHAEVNCI 57
Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A +T YV+LEPCSH+G++PPCA ++ GI++VV+ DP +V+G G+
Sbjct: 58 AFAKANTPELIAKSTLYVSLEPCSHWGKTPPCADLVVASGIKKVVIGTIDPFAKVAGAGI 117
Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSV 172
+ L Q G+ V + E E + + T +KR ++ LK A + D I V
Sbjct: 118 KRLIQAGVDVTVGVQEKECQEINKRFFTYHEKKRPYVILKWAETADGFIAPKTRDAQQPV 177
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
IT S+ VH R++ AILVG TVL D+P LT R +P+R+++D L
Sbjct: 178 WITNPYSRQLVHKWRSEEMAILVGGKTVLEDNPSLTTRDWE--GKNPIRVVIDTKGNLDN 235
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + VI D + + L +G+ S+++
Sbjct: 236 NLTVFNQEAETLVI------------------------ASTDSQLISETLYDKGIQSVII 271
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
EGGA FI++ L D +++ G +P L ++F+ + D D
Sbjct: 272 EGGAQTLQHFIDANLWDEARIFKGNTSF-SKGTKAP----QLSQHFLLEKTDTILDDTLH 326
Query: 353 EYIGKNL 359
Y ++
Sbjct: 327 YYKNSSI 333
>gi|78219882|gb|ABB39231.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 363
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 84/363 (23%), Positives = 141/363 (38%), Gaps = 15/363 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M A+ + TS NP V ++VKDG + RG G PHAE++ L +A G
Sbjct: 1 MLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLRDAARRGVNP 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
T VTLEPC+H G++PPC+ +++ GIR VVV + DP+ G +
Sbjct: 61 AECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQGGANFLRENGVTVET 120
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E + + ++T + + +K+A + D I S I+G S+ +VH LR
Sbjct: 121 GVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHELR 180
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+DA++VG GT AD+P+LTCRL G++ ++ +++ +
Sbjct: 181 RHADAVIVGGGTFRADNPQLTCRLEGIRRQPLAVVVTSQLPDAGAPMHLLQQRPHETIFW 240
Query: 248 VT-------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ D L + L EGG +A
Sbjct: 241 TPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTLCEGGGMLAL 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYI 355
S + + + L+ + ++ + + G DV L
Sbjct: 301 SMLEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQALGLRICNVARSGEDVILTLR 360
Query: 356 GKN 358
+
Sbjct: 361 PRK 363
>gi|254562342|ref|YP_003069437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Methylobacterium extorquens DM4]
gi|254269620|emb|CAX25591.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Methylobacterium extorquens DM4]
Length = 376
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 136/363 (37%), Positives = 190/363 (52%), Gaps = 11/363 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG
Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI
Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E H +V + R + LK+A ++D + + ITG ++ V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252
Query: 244 PVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +++T P A + DL L L RG+T + EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+A + L+D+ L + +G+ G + + L + + V +G D +
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGDAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372
Query: 354 YIG 356
Y
Sbjct: 373 YER 375
>gi|320108304|ref|YP_004183894.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
gi|319926825|gb|ADV83900.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4]
Length = 397
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 18/357 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+ D R M AL +R GL S NP V C++ ++G+G Y HAE+ AL+
Sbjct: 4 TFTEIDRRHMEQALTLARATSGLASPNPQVGCVLAHGEEIVGQGAHRYVARDHAEIVALK 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+A +A+GATAYVTLEPCSH+GR+ PCA +IE G+ RVV DP+ +VSG G+ + Q
Sbjct: 64 QADGKAKGATAYVTLEPCSHHGRTGPCANALIEAGVARVVAATLDPNPKVSGSGMARIEQ 123
Query: 122 KGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPIT 175
GI+ +E + + A+ + ++ +TLK A+S D + +T
Sbjct: 124 AGIVAQHGLLEEQARAMNDAFAHYILTRQPLVTLKSALSVDGKLAPLPANRIGNSPFWLT 183
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G ++ +VH LR +DAIL G+GT++ADDP LT R N + RI+LD H +L L ++
Sbjct: 184 GTAAREEVHRLRHSNDAILTGVGTLIADDPLLTDRSNLPRRRPLQRIVLDTHLRLPLTAR 243
Query: 236 IIKTALLAPVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRG--- 286
I+ T +I+ + + I+ + L G
Sbjct: 244 ILDTINDDLIILCSARAPDETQKHLRTLGVRVEHVSEILTKRGTHELDIPGTLKLLGTFD 303
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ S+L+E G ++ +F+++ +VD +L+ ++ +G +P F V
Sbjct: 304 LLSVLLEAGPSLNTAFLDADMVDKAVLFFAETELGNDALPFAYGNHS---PFRLVEH 357
>gi|240139918|ref|YP_002964395.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Methylobacterium extorquens AM1]
gi|240009892|gb|ACS41118.1| fused diaminohydroxyphosphoribosylaminopyrimidine
deaminase;5-amino-6-(5-phosphoribosylamino) uracil
reductase [Methylobacterium extorquens AM1]
Length = 376
Score = 167 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 138/364 (37%), Positives = 189/364 (51%), Gaps = 13/364 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG
Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI
Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E H +V + R + LK+A ++D + + ITG ++ V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252
Query: 244 PVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +++T P A + DL L L RG+T + EGG A
Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352
+A + L+D+ L + +GE G P+ L + V +G D +
Sbjct: 313 LADALAAHDLIDACTLITGSVTLGEAGG-LPVLGANLARRLADGSLSVVETRDYGPDTAV 371
Query: 353 EYIG 356
Y
Sbjct: 372 TYER 375
>gi|330718204|ref|ZP_08312804.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Leuconostoc fallax KCTC 3537]
Length = 346
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 7 DARFMSAALRFSRWH-VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M+ A + + LT NP V +IVKD +V+ G G HAE+ + +
Sbjct: 3 DLTLMALAGKTAAQANKDLTFENPRVGAVIVKDNVVLATGYHHQFGQEHAEMNTFHQLKD 62
Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
A+ AT YVTLEPCS +G+ CAQ + + G+RRVV+ DP+ +G G+ L Q G
Sbjct: 63 PAQVIDATMYVTLEPCSTHGKVGSCAQSMAKWGLRRVVIGSIDPNPSTNGHGVAILKQAG 122
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I VD + + + + ++ LK+A S++ ++ + +T + V
Sbjct: 123 IQVDVLNTEHSRRLNPEFHYYFEHRLPYVQLKLATSKNGIVSDNAKTRIKLTNHKADIDV 182
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA AIL+G T L D P LT R L P+RI+LD +L I
Sbjct: 183 HQERASKSAILIGSQTFLTDWPSLTVRYLALHHPQPLRIVLDRRGRL---QNIKFDFSNR 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+I + + + L + + + S++VEGG ++ SFI
Sbjct: 240 WLIYTENHAFAEKHA-------YVKESHNGLIGVLNDLAQQQQIQSIMVEGGPSLIQSFI 292
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
L + ++YR+ ++ + G+ S + ++ G+ V L Y
Sbjct: 293 AQDLWNEYLIYRTDKLLLDSGLASVTLQQNPDEMLT------IGNAVKLRY 337
>gi|317484774|ref|ZP_07943673.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
gi|316923981|gb|EFV45168.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6]
Length = 379
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 100/374 (26%), Positives = 166/374 (44%), Gaps = 20/374 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
FM A + + NP+V ++V+DG+ + RG G HAEV+ L++A G
Sbjct: 6 ESFMREAAELAERGRWSAAPNPTVGAVLVRDGVAVARGWHTAYGKSHAEVECLKDAEAKG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ T VTLEPC+H G++PPC + +I GIR VV+ + DP+ + +G G++ L++ G+
Sbjct: 66 VDPSACTLVVTLEPCNHQGQTPPCTEAVIAAGIRHVVIGLRDPNPKAAG-GMERLAEAGV 124
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E + + +L Q KR ++ LK+A++ D I S ITG ++ QV
Sbjct: 125 EVEAGVCEELCRDLVADFLIWQTTKRPYVMLKLAMTLDGRIATRTGHSRWITGETARRQV 184
Query: 184 HLLRAQSDA----ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
H LRA ILVG T+ D+P LT RL+ E P+ + + + K
Sbjct: 185 HELRANVGRAGGAILVGGNTLHTDNPLLTARLDDPVERQPLAVSISSRVPAPDSLLLFKE 244
Query: 240 ALLAPVIIV------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ T + R + ++ ++ L + G +L E
Sbjct: 245 RPTETIFFTTASGAATPRAAQLRERGVRIRGLDRWKSGEDLVQILEYLRQEAGCPYVLCE 304
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGS 348
GG + S + + LVD L+ + V+G+ + + VR + G
Sbjct: 305 GGGRLGLSLLEAGLVDEFHLHIAPKVLGDNDARPLFDGRTPLELDEALSLRLVRMEPCGE 364
Query: 349 DVCLEYIGKNLCLQ 362
D L + C Q
Sbjct: 365 DGHLIFRPVRACSQ 378
>gi|291545679|emb|CBL18787.1| riboflavin biosynthesis protein RibD [Ruminococcus sp. SR1/5]
Length = 253
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 91/249 (36%), Positives = 136/249 (54%), Gaps = 3/249 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E
Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTEP 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-II 125
A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G +
Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTETIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V+ M E + K ++ +K A++ D I S ITG ++ +V
Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEAARKEVQH 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
+R Q I+ GIGTVLADDP L R+ G + P+RI+ D ++ DS+I+K+A
Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGWKS--PVRIVCDSKLRIPPDSQIVKSAEKYRT 240
Query: 246 IIVTENDDP 254
I+ +
Sbjct: 241 IVAYADQKN 249
>gi|282877095|ref|ZP_06285937.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
35310]
gi|281300777|gb|EFA93104.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC
35310]
Length = 326
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 58/359 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M L+ ++ L NP V +IV G ++G G G HAEV A
Sbjct: 1 MNQEELDKMYMRRCLQLAKQGRALAKPNPMVGAVIVYQGRILGEGYHVRCGQAHAEVNAF 60
Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+T YV+LEPC H G++PPCA II ++RVV DP +V GRG+
Sbjct: 61 ASVRPADEPLLPQSTLYVSLEPCCHTGKTPPCADLIIRKHVKRVVCGCIDPFAQVHGRGV 120
Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
Q L GI V + + E + + + +R +I LK A + + + A + ++
Sbjct: 121 QKLRDAGIDVTVGVLDEECRALNRQFNVYNMLERPYILLKWAQTINGFL-DADGEPLALS 179
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
++ VH LRAQ DAILVG T + P LT R + + +
Sbjct: 180 TPFTQMLVHRLRAQYDAILVGRVTDEREHPRLTVREWSGPDPLRLVL------------- 226
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
D L +L+ L + V SL+VEGG
Sbjct: 227 ----------------------------------RDGITLPQLMADLHQQHVQSLMVEGG 252
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A SFI++ L D I + S ++ GG +P+ L + ++R+ + +V +
Sbjct: 253 AKTLQSFIDAGLWDEIRVETS-RLLVSGGTKAPV----LPAGLILLQREVYDGNVVDTF 306
>gi|302541057|ref|ZP_07293399.1| riboflavin biosynthesis protein RibD [Streptomyces hygroscopicus
ATCC 53653]
gi|302458675|gb|EFL21768.1| riboflavin biosynthesis protein RibD [Streptomyces himastatinicus
ATCC 53653]
Length = 362
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 104/353 (29%), Positives = 156/353 (44%), Gaps = 9/353 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + +G TS NP V C+I+ +G G G G PHAEV AL AGE ARG
Sbjct: 1 MRRAVALAARGLGHTSPNPVVGCVILDAEGQPAGEGWHQRAGGPHAEVHALRAAGERARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PCA+ +++ GI RV V DP + G + +
Sbjct: 61 GTALVTLEPCNHTGRTGPCARALLDAGIARVRYAVADPTGQARGGAATLAAAGVDVAAGP 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ E + A+LT R + K A + D A S IT ++ VH LRA+
Sbjct: 121 LTDEAEAVNEAWLTAMRRGRPFVLWKYAATLDGRSAAADGTSRWITSAAARADVHRLRAE 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+DA++VG GT+ ADDP L R + L D++I+ AP ++
Sbjct: 181 ADAVVVGSGTLRADDPHLAVRDRDGVTQPLRVAVDTDATALKPDARILDD--AAPTLVAV 238
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGGAAVAHSFINSR 306
D L + + L L RGV S+L+EGG +A +F+ +
Sbjct: 239 AEDADTGHLPAGTDTARLPRARAGRGLDIAALLAALHDRGVRSVLLEGGPTLAGAFLAAG 298
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD ++ Y + +++G G + + G D+ + +
Sbjct: 299 AVDKVVGYLAPVLLGAGPAALADAGITTIAQALRMDTADVTRLGPDLRITAVP 351
>gi|19552809|ref|NP_600811.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032]
gi|62390479|ref|YP_225881.1| bifunctional riboflavin-specific deaminase/reductase
[Corynebacterium glutamicum ATCC 13032]
gi|21324366|dbj|BAB98990.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
glutamicum ATCC 13032]
gi|41325816|emb|CAF21605.1| PUTATIVE BIFUNCTIONAL RIBOFLAVIN-SPECIFIC DEAMINASE/REDUCTASE
[Corynebacterium glutamicum ATCC 13032]
Length = 328
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 109/355 (30%), Positives = 159/355 (44%), Gaps = 39/355 (10%)
Query: 12 SAALRFSR----WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ AL + G TS NP V +I+ DG V+G G TA G PHAEV AL AG
Sbjct: 4 AHALDLAHHVSDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGVR 63
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A G TA VTLEPC+HYGR+ PC++ +++ GI V DP + G +L++ G V
Sbjct: 64 ANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFP-SAAGGGAFLAEAG--V 120
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
D E L +L R H+TLK A + D G S ITG ++ VH
Sbjct: 121 DTHFLDERIRALEPWLVATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R++ DAI+VG GT L D+P LT R + + R ++ ++ DS + +
Sbjct: 181 RSKRDAIIVGTGTALTDNPSLTARTDTGLYENQPRRVVIGSREVPADSNLARLGYE---- 236
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + L+ L +G +L+EGG +A + +
Sbjct: 237 ------------------------QYAGIPEALSALWDKGCRDILIEGGPTLAGAALRLG 272
Query: 307 LVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358
+VD + Y + ++G G I P E + F GSDV +E + K
Sbjct: 273 IVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327
>gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 596
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 95/365 (26%), Positives = 161/365 (44%), Gaps = 20/365 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ DA F+ A S GLTS +P+ C+I G V G G G AE A+E A
Sbjct: 30 TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE +RGATAY+ +EP +G +++ GI RVVV + P + G ++ L G
Sbjct: 90 GEFSRGATAYLNMEPGDCHG-DHTAVSALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148
Query: 124 IIVD-----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
I V+ + + R + LK A++ D I + +
Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ +S+ +V LR SDA++VG TV DDP LT R H+P RI++ L
Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQ--GHTPTRIVMTQSLDLPE 266
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + ++ +++ K + ++ D + ++++ RG S+L
Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFG 347
E G +A S I+S ++ ++ + + +IG PSP+ + N + V + G
Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVG 386
Query: 348 SDVCL 352
D+ +
Sbjct: 387 PDMLV 391
>gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana]
gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 599
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 95/365 (26%), Positives = 161/365 (44%), Gaps = 20/365 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ DA F+ A S GLTS +P+ C+I G V G G G AE A+E A
Sbjct: 30 TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE +RGATAY+ +EP +G +++ GI RVVV + P + G ++ L G
Sbjct: 90 GEFSRGATAYLNMEPGDCHG-DHTAVSALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148
Query: 124 IIVD-----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
I V+ + + R + LK A++ D I + +
Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ +S+ +V LR SDA++VG TV DDP LT R H+P RI++ L
Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQ--GHTPTRIVMTQSLDLPE 266
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + ++ +++ K + ++ D + ++++ RG S+L
Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFG 347
E G +A S I+S ++ ++ + + +IG PSP+ + N + V + G
Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVG 386
Query: 348 SDVCL 352
D+ +
Sbjct: 387 PDMLV 391
>gi|34764917|ref|ZP_00145265.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|27885744|gb|EAA23138.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE;
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
Length = 223
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 1/208 (0%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE
Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI
Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124
Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ ++E E K +L K ++ LK ++ D I S IT I++ +V
Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN 212
LR + AI+VGI TVL D+P L L
Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSDLM 212
>gi|226366358|ref|YP_002784141.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Rhodococcus opacus B4]
gi|226244848|dbj|BAH55196.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Rhodococcus opacus B4]
Length = 354
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 105/353 (29%), Positives = 164/353 (46%), Gaps = 34/353 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + G TS NP+V +++ G + G G+T G PHAEV AL EAG+ ARG
Sbjct: 18 MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARG 77
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
TA VTLEPC+H+GR+ PC+Q +++ G+ V V DP+ + G + L G+ V
Sbjct: 78 GTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNP-EAAGGAEALVSAGVEVTSG 136
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + L A+L RQ R H+T K A + D A S ITG ++ +VH R
Sbjct: 137 LRADDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADR 196
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
A+ DAI+VG GTVLADDP LT R ++ + ++++ + +
Sbjct: 197 AKLDAIVVGTGTVLADDPRLTARTPDGSLAAHQPVRVVVGLGDIPPGARVLDDSAPTLRL 256
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D+ + AL+ T +L+EGG +A +F+ +
Sbjct: 257 RTRDVDEVLAALS--------------------------EYTDVLLEGGPRLAGAFLAAG 290
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD I Y + +++G G + + F + G D+ L +
Sbjct: 291 RVDRIQAYLAPLILGAGASAVSEAGVHTIGGALRFRHESVETIGPDLLLSLVP 343
>gi|237785569|ref|YP_002906274.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
[Corynebacterium kroppenstedtii DSM 44385]
gi|237758481|gb|ACR17731.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase
[Corynebacterium kroppenstedtii DSM 44385]
Length = 357
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 107/357 (29%), Positives = 163/357 (45%), Gaps = 33/357 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M A G TS NP V +I+ DG ++G+G T G PHAEV A+ +AG+
Sbjct: 21 EHAMDRAAELGWEAKGTTSPNPPVGAVIIDADGRIVGQGHTQPAGGPHAEVMAVRDAGDA 80
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GATA VTLEPC+H GR+ PC ++ GI VV V DP+ ++ G + L++KG+ V
Sbjct: 81 TAGATAIVTLEPCAHTGRTGPCTDVLLSAGISTVVYAVPDPNP-IAHGGHEVLAEKGLTV 139
Query: 127 D--RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ + L ++L R R+ +TLK+A + D + S IT ++N VH
Sbjct: 140 IGGFHADEVRRGALRSWLHRIGTGRAMVTLKVAATLDGRVAAPDGTSQWITSADARNYVH 199
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA DA++VG GTV+AD+P LT R K T
Sbjct: 200 RDRATRDALIVGTGTVIADNPRLTAR------------------------KPDGTLYAHQ 235
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V PV A + + D DL ++ L +G LL+EGG +A + +
Sbjct: 236 PDHVIVGSRPVPEEAKIFAHARSWHFDTHDLSHVIQELTQQGYVDLLIEGGPMLASAALE 295
Query: 305 SRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+VD I Y + ++G G+P+ + ++F G D+ ++ +
Sbjct: 296 QGVVDQIHWYVAPSILGS-GLPAIQIPRVSTLTDRRDFTIEHITQLGPDLLVDAHRQ 351
>gi|148272143|ref|YP_001221704.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
gi|147830073|emb|CAN01002.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 356
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 146/354 (41%), Gaps = 29/354 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE- 65
R M L + NP V C+I+ G VI G G HAEV AL +
Sbjct: 22 ERAMRRGLELAAEGPAW-GPNPRVGCVILDARGRVIAEGRHRGAGSAHAEVDALRQLPAG 80
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARG+TA VTLEPC+H GR+ PCA +IE G+ RV V DP V SG + + +
Sbjct: 81 AARGSTAVVTLEPCNHTGRTGPCAAALIEAGVARVAYAVADPGVESSGGAARLRAAGIEV 140
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+D ++ E FL +L R +T K A S D I A S ITG ++ VH
Sbjct: 141 IDGVLADEAAAFLRVWLGSARLGRPFVTAKWASSLDGRIAAADGTSRWITGPAAREDVHR 200
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
RA++DAILVG GTVLADDP LT R + + + D + +
Sbjct: 201 RRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRAIPDDAAVHRHPRRLI 260
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
D + L RG+ + VEGG + + + +
Sbjct: 261 -----------------------RITGHDPAAAIAELGRRGIRHVFVEGGPTIVSALVAA 297
Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD ++ Y + +++G + +E + G D+ +
Sbjct: 298 GLVDEVVAYLAPVLLGGPRTATGDLGVESMPAAHRLTLISTTRLGDDILVTARP 351
>gi|229495189|ref|ZP_04388924.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
ATCC 35406]
gi|229317632|gb|EEN83530.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis
ATCC 35406]
Length = 342
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 104/340 (30%), Positives = 159/340 (46%), Gaps = 14/340 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ D +M L + G TS NP V ++V ++G G G PHAEV
Sbjct: 1 MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS 60
Query: 63 AG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ +T YV+LEPCSHYG++PPCA+ +++ + RVVV + DP V+GRG+
Sbjct: 61 VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL 120
Query: 119 LSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVP 173
L KG+ V+ + E + +LT + R +TLK A S+D I A
Sbjct: 121 LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV 180
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
+ I + VH LR DAILVG T+ D+P LT R P+ + +
Sbjct: 181 FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRFWWGTSPQPVVLDSEGVL-CHQA 239
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
K+ + + P IV+ + L +N I + LL L R + SLLVE
Sbjct: 240 YKVNQNSTSKPWFIVSPSAFRSQPLP---ENCIAIERSEHFIASLLETLASRKIQSLLVE 296
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GGA +F++S L D++ S ++ G+ +P+ G
Sbjct: 297 GGAQTLQAFLDSGLYDAVDREVSPRLL-YEGVAAPIFSGD 335
>gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K]
Length = 392
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 125/355 (35%), Positives = 180/355 (50%), Gaps = 7/355 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG A
Sbjct: 26 ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
RGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V
Sbjct: 86 RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ +E + T E R +TLK AV+ D I + ++G ++ VH L
Sbjct: 146 KGVLRAECDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + DA+LVG GT ADDP LT R P+R++LD L + + AP +
Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTR-LPRGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264
Query: 247 IVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + P + DL+ LL L RGV LLVEGGA V F+ +
Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
LVD + ++ + + G G+P G V + G DV + +
Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDVLVTGVP 379
>gi|163852584|ref|YP_001640627.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
PA1]
gi|163664189|gb|ABY31556.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens
PA1]
Length = 371
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 139/370 (37%), Positives = 191/370 (51%), Gaps = 14/370 (3%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M +S D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE
Sbjct: 1 MDLSEQQALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEP 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL AGE A GAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG
Sbjct: 61 LALAMAGEAAHGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHA 120
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITG 176
L GI V+ + E H +V + R + LK+A ++D + + ITG
Sbjct: 121 GLRAAGITVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITG 180
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ VHL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +
Sbjct: 181 SVADGAVHLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHL 240
Query: 237 IKTALLAPVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
++ A P +++T P A + I DL L L RG+T +
Sbjct: 241 VRGARDLPTLVLTGRGAPAHARRMLASFGVEIAFVPIDAAGRIDLPAALKALAERGLTRI 300
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYF 346
EGG A+A + L+D+ L + +GE G + + L + V +
Sbjct: 301 CSEGGPALADALAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGLLSVVETRDY 360
Query: 347 GSDVCLEYIG 356
G D + Y
Sbjct: 361 GPDTAVTYER 370
>gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans
2CP-1]
Length = 392
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 7/355 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG A
Sbjct: 26 ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126
RGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V
Sbjct: 86 RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ + T E R +TLK AV+ D I + ++G ++ VH L
Sbjct: 146 KGVLRDACDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + DA+LVG GT ADDP LT R P+R++LD L + + AP +
Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTR-LPRGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264
Query: 247 IVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + P + DL+ LL L RGV LLVEGGA V F+ +
Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
LVD + ++ + + G G+P G V + G D+ + +
Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDLLVTGVP 379
>gi|154250091|ref|YP_001410916.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
Rt17-B1]
gi|154154027|gb|ABS61259.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum
Rt17-B1]
Length = 365
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 104/371 (28%), Positives = 166/371 (44%), Gaps = 14/371 (3%)
Query: 1 MPVSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57
M + D RFM A+ ++ +G + NP V +IVKDG ++ G Y G HAE
Sbjct: 1 MIFLNEDKVHERFMKLAIVIAKKGIGFVNPNPPVGAVIVKDGKILSMGYHKYYGGYHAER 60
Query: 58 QAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
A+ AG + G+T YVTLEPC HYG++PPC II+ GI+ V + DP+ +SG
Sbjct: 61 DAILSALNAGIDISGSTMYVTLEPCDHYGKTPPCTDLIIQSGIKEVYIACTDPNP-ISGN 119
Query: 115 GLQWLSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
G + L + G+ V +E E + + ++TLK A + D I S
Sbjct: 120 GAEKLRKNGVDVHIGLLEEEARELAKFFFKSVETGIPYVTLKYAATLDGKIADVNGNSKW 179
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
IT + VH LR++ A+LVG GTV+ D+P L R ++ +P++++LD +
Sbjct: 180 ITD-ELRKVVHKLRSEHMAVLVGAGTVIKDNPTLNVRFLKSKKRNPIKVVLDKRGVIFEK 238
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
K + VI+ TE L + ++ L T+ V S+LVE
Sbjct: 239 IKDLNVFQGEKVIVFTEKQVSAPELNGVNGVKIFNVLEPIEI--LKTLYKEERVDSVLVE 296
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-VRRDYFGSDVCL 352
GG+ + F+ D I + +G+G +++ F ++ +
Sbjct: 297 GGSEIFSQFLP--FADEIYGFYGLKALGKGKGIFENIVNFIDSPFDFSIKHFKVSKNKKE 354
Query: 353 EYIGKNLCLQE 363
+ C Q
Sbjct: 355 FLVVMKRCSQG 365
>gi|71083736|ref|YP_266456.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Pelagibacter ubique HTCC1062]
gi|71062849|gb|AAZ21852.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Pelagibacter ubique HTCC1062]
Length = 351
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 174/352 (49%), Gaps = 10/352 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++ + E G+
Sbjct: 1 MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGS 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L L K I+V + +
Sbjct: 61 KMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDL 120
Query: 131 ESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ +A +K ++T KIA+S++N+I + I+ + H LR +
Sbjct: 121 LKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLIYS--KDTKRISDIHTDRFTHFLRYK 178
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
+D++++ T+ DDP+L CRL GL + SP RIILD + ++ +S I KTA II
Sbjct: 179 NDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFY 238
Query: 250 ENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
N +L + + + D+K +L L G +LLVEGG ++ I
Sbjct: 239 YNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKK 298
Query: 306 RLVDSIILYRSQI---VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+L + LY+ + L+E G DV Y
Sbjct: 299 KLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNKLKINKKLGKDVITLY 350
>gi|323357080|ref|YP_004223476.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
testaceum StLB037]
gi|323273451|dbj|BAJ73596.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium
testaceum StLB037]
Length = 343
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 99/348 (28%), Positives = 145/348 (41%), Gaps = 32/348 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68
M AL+ +R G NP V +I+ G ++ G G HAEV AL + A AR
Sbjct: 10 MRRALQLARR--GPRGLNPQVGAVILSPAGEILAEGYHRGAGTAHAEVDALSQLAPGAAR 67
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GATA VTLEPC+H GR+ PCA +IE G+ RVV D + G + L G+ V++
Sbjct: 68 GATAVVTLEPCNHTGRTGPCAVALIEAGVARVVFA-LDDPTDAASGGAERLRAAGVDVEQ 126
Query: 129 MMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
E E L R H+ +K A S D S ITG ++ VH R
Sbjct: 127 GPEEESAEALVHDWVALTRTGRPHVVVKWAQSLDGRAAADDGTSQWITGPAARRDVHARR 186
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A +DAI+ G GTV ADDP LT R + + + ++ P+
Sbjct: 187 ATADAIVAGTGTVRADDPALTARDEDGSLLPAQPLPVIIGESETAPDAAVRRHPREPLFF 246
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
DL +L L RG+ + VEGG +A +F+ + L
Sbjct: 247 A-----------------------THDLSAVLADLGERGIQRVFVEGGPTLASAFVRADL 283
Query: 308 VDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352
D +++Y + ++IG + + + G D+ +
Sbjct: 284 ADELLVYVAPVLIGGSRLALGDVGVPTIADARRLAVASVQNLGDDLLI 331
>gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 363
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 108/358 (30%), Positives = 159/358 (44%), Gaps = 20/358 (5%)
Query: 19 RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVT 75
R + NP+V C++ KD +G G T G PHAEV AL +A E+ GATAYVT
Sbjct: 2 RRCSYEANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVT 61
Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG- 134
LEPCSH+GR+ PC +I+ GI++VV DP+ V+G G L G+ V+ +
Sbjct: 62 LEPCSHHGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVEVLPSEHPL 121
Query: 135 ----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ + +R + K + +K+A S D + S ITG ++ H RA+S
Sbjct: 122 AIESRELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARS 181
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
AIL GIGTVLAD P L RL P +++D + LD+ +
Sbjct: 182 CAILTGIGTVLADRPRLDVRLVE-TPRQPHLVVVDSKLETPLDAPFFIAGRAVFIYAAAP 240
Query: 251 NDDPVLALA--------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
ND AL + N DL ++ L R + L VE G + S
Sbjct: 241 NDAKRAALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSL 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ LVD ++Y + ++G+G PL E + G D+ + +
Sbjct: 301 VREGLVDEFVVYVAPRLLGQGAGMFQLGPLTELSQGVELEFKSTEMLGPDLRVVARVQ 358
>gi|333029739|ref|ZP_08457800.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
18011]
gi|332740336|gb|EGJ70818.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM
18011]
Length = 348
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 150/352 (42%), Gaps = 18/352 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66
++M ++ + + + NP V +IV GI+IG G G HAEV A+ ++
Sbjct: 4 EKYMKRCIQLASYGKLHAAPNPLVGAVIVHKGIIIGEGFHIQSGKAHAEVNAINSVKDQS 63
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T +V+LEPCSH G++PPC II I VV+ DP +V+GRG+ L ++GI
Sbjct: 64 LLPESTIFVSLEPCSHTGKTPPCVDLIINKKIPHVVIGCQDPFSKVAGRGIAKLKEQGIK 123
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ + E+E K +H + Q EKR +I LK A S D I P + +
Sbjct: 124 VEIGILENECKELIHRFYIFQEEKRPYILLKWAESADGYIDQIRSSGTPTLLSSPLSSIL 183
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ +++ + +G A + + P+R+I+D + L I +
Sbjct: 184 THKRRAEVESILVGRRTALLDNPSLTTRHWYQKDPIRLIIDRYLSLPNTLHIFDGSTPTF 243
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + + L ++L + + + S+LVEGGA + SFI+
Sbjct: 244 IFTEVDKKSNFKNRT-----YIQLDFNADILTQILNWMYFQNIQSVLVEGGAQLHQSFID 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L D + S I +G + + + R G Y
Sbjct: 299 ADLWDETHIEESPQSILKG-----VSAAQIPTHTKYQRVKKMG-----RYYR 340
>gi|54297135|ref|YP_123504.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Paris]
gi|53750920|emb|CAH12331.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Paris]
Length = 357
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 101/361 (27%), Positives = 160/361 (44%), Gaps = 7/361 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL ++ G + NPSV + V++G +I + G PHAE L +
Sbjct: 1 MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ G T YVTLEPC+H+G++PPC II GI+ VV DP+ V + L + GI
Sbjct: 61 QTPGVTLYVTLEPCNHWGKTPPCVDAIINHGIQEVVFSYFDPNPIVAKSNSSEKLREHGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + F +Y + + +T+KIA + D IG + V ++ + + H
Sbjct: 121 QVRHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA SD IL TV D+P + RL+ P+ I+D + LS D+ I T
Sbjct: 181 QMRAASDVILTSAKTVQMDNPRMNARLDSGVVAKPV-AIVDRNLSLSDDTIIFST-AKHC 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + DL ++T L G + VE G A+ + +
Sbjct: 239 HIYHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHS 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCLQ 362
LV LY +G I + ++G EK V G ++ CL++ ++ CL
Sbjct: 299 KGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHT-VSWQAMGDNMIACLDW-QEDECLP 356
Query: 363 E 363
+
Sbjct: 357 D 357
>gi|317504450|ref|ZP_07962429.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
gi|315664438|gb|EFV04126.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606]
Length = 318
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 99/355 (27%), Positives = 147/355 (41%), Gaps = 44/355 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M L+ + NP V +IV +IG G G HAEV A E
Sbjct: 3 HEYYMKRCLQLAENGRQNAKPNPMVGAVIVARNRIIGEGYHVRFGEEHAEVNAFASVKPE 62
Query: 67 ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q +
Sbjct: 63 DEMLLNEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122
Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V +ME E H ++T + R +I LK A + + I G + ++ ++
Sbjct: 123 GIEVIVGVMEKECLALNHRFITFNAKHRPYILLKWAQTLNGFIS-RKGGPLQLSTPKTQM 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA++DAILVG T L+D P L R Q + + + + S A
Sbjct: 182 LVHQLRAENDAILVGHTTFLSDHPRLDVRQWSGQNPERIVLSPTMSAQNARPSNWTVAAT 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ VI L SL+VEGG +
Sbjct: 242 IDKVI---------------------------------AHLYATKKQSLVVEGGRMTLQA 268
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FI+ L D I + + ++I G+P+P ++ + + + + +
Sbjct: 269 FIDRGLWDEIRIETAPVLI-TDGVPAP----HIPSDAHIEKIESIDGNQIITLCR 318
>gi|332670474|ref|YP_004453482.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
gi|332339512|gb|AEE46095.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484]
Length = 395
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 111/356 (31%), Positives = 160/356 (44%), Gaps = 35/356 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66
M A+ +R NP V C++ DG V+G G A G PHAEV AL +A
Sbjct: 27 MRQAMLLARRG-PRHGANPRVGCVLLTPDGSVVGEGWHAGAGTPHAEVAALRDAASRGLP 85
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GATA VTLEPC H GR+ PC Q ++ G+RRVVV V DP+ +G + + +V
Sbjct: 86 TDGATAVVTLEPCDHTGRTGPCTQALLAAGVRRVVVSVPDPNPVAAGGAERLRAAGVDVV 145
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ +G+ L +L R +TLK+A S D + A S IT +S++ H L
Sbjct: 146 TDVLAPDGRTLLGTWLASVERGRPFVTLKLATSLDGRVAAADGSSRWITSDVSRHHAHDL 205
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+ DAI VG GTVLADDP LT R + H + + + + V
Sbjct: 206 RAEVDAIAVGTGTVLADDPSLTARNAAGELHRDQPLRVVVGHRDVPAGARLHGPGGEVV- 264
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D +L +L R V LLVEGG +A +F+ +R
Sbjct: 265 ----------------------HVRSHDPADVLRVLAEREVRHLLVEGGPTLAAAFLRAR 302
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
LVD + Y + +++G G PS + + + G DV + +
Sbjct: 303 LVDEVHAYVAPVLLGAG--PSAVADLGVTGIDGALRLTMRSVLPLGPDVLVVATPE 356
>gi|282880496|ref|ZP_06289203.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
5C-B1]
gi|281305599|gb|EFA97652.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS
5C-B1]
Length = 314
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 145/353 (41%), Gaps = 56/353 (15%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
M ++ + D +M L+ ++ L NP V ++V +IG G G HAEV
Sbjct: 1 MNINQDAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVN 60
Query: 59 ALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
A ++ +T YV+LEPCSHYG++PPCA I+E ++RVV D +V GR
Sbjct: 61 AFAAVRQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGR 120
Query: 115 GLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
G+ L + GI V + E E K+ + R +I LK A + + I ++
Sbjct: 121 GIDKLRKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDDN-GRAIA 179
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
++ +K VH LR++ DAILVG T + P+L R + +
Sbjct: 180 LSSPFTKMLVHKLRSEYDAILVGRVTDEREHPQLNVREWSGPSPLRLVLHHGISL----- 234
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+LL L R + SLLVE
Sbjct: 235 ------------------------------------------PELLDDLYQRNLQSLLVE 252
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GGA SFIN+ L D I + + + + G P+P +E + R Y
Sbjct: 253 GGATTLQSFINANLWDEIRIETAPVTV-TNGTPAPRVPQGVELIAHEIHRKYI 304
>gi|163788599|ref|ZP_02183044.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
ALC-1]
gi|159875836|gb|EDP69895.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium
ALC-1]
Length = 323
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 148/348 (42%), Gaps = 32/348 (9%)
Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73
+ + +G T NP V +IV D +I G T+ G HAEV A+ ++ +T Y
Sbjct: 2 QIAENGLGFTRPNPMVGAVIVHDKKIISEGFTSTYGGNHAEVNAINSIKDKSLLEKSTLY 61
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ES 132
VTLEPCSH+G++PPC+ I++ I V++ D + V+G+G+ L G V + E+
Sbjct: 62 VTLEPCSHHGKTPPCSDLILKHKIPEVIIGCVDDNPEVAGKGIAKLKASGCKVTVGVLEA 121
Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFISKNQVHLLRAQ 189
E K + T +KR +I LK A ++D I V IT S+ VH RA+
Sbjct: 122 ECKTHHKRFFTFHNKKRPYIILKWAETKDGFIAPETKNEKKPVWITNPYSRQLVHKWRAE 181
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
AILVG TVL D+P LT R + + + I L+ + +
Sbjct: 182 EQAILVGTNTVLEDNPSLTVRDWDGENPTRVVIDRTSKLNLNFNVFSDEAKTTRLT---- 237
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
I + ++ +L + S+++EGGA +FI+ L D
Sbjct: 238 ---------------ELNIDFNKPIAVQVANMLYQSNINSIIIEGGAKTLQTFIDEGLWD 282
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++ I + G +P G + +D Y+
Sbjct: 283 EARVFIGDIDF-KNGTKAPTLNG------KQITESKIKNDTLRIYVKD 323
>gi|270339625|ref|ZP_06005479.2| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
17361]
gi|270334334|gb|EFA45120.1| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM
17361]
Length = 365
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 95/358 (26%), Positives = 141/358 (39%), Gaps = 33/358 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D R+M L+ +R NP V +IV +DG +IG G G HAEV A
Sbjct: 29 DERYMRRCLQLARNGWQNAKPNPMVGAVIVSRDGRIIGEGYHVRCGEGHAEVNAFASVRP 88
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E + +T YV+LEPCSH+G++PPCA I++ G+RRVV DP +V GRG+ + +
Sbjct: 89 EDEVLLKESTVYVSLEPCSHWGKTPPCADLIVKKGVRRVVCGCIDPFSKVQGRGVAHIRK 148
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E E ++T EKR +I LK A +++ I A +G
Sbjct: 149 AGIEVTVGVLEQECLELNRRFITFNTEKRPYILLKWAQTENGKIASASVTPAVGSG---- 204
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+++ +L + + P S
Sbjct: 205 ---VSTVMTVAPLVLSSAFTKMLVHKLRAENDAILVGHETVRADHPQLNTRSWS------ 255
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
D L LA ++ + D+ KLL L SL+VEGGA
Sbjct: 256 ---------GRDPERLVLARCTDDVPQWFKCFDDMDKLLQYLYNNRRQSLIVEGGAVTLR 306
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
SF+ L D I + + + EG ++ L N V + + Y N
Sbjct: 307 SFLERGLWDEIRVETAPWSVAEG-----VDAPDLPDNVRLVESHDYDGNTIQRYFKVN 359
>gi|269956518|ref|YP_003326307.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
DSM 15894]
gi|269305199|gb|ACZ30749.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica
DSM 15894]
Length = 350
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 149/353 (42%), Gaps = 31/353 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M AL + NP V C+++ DG VIG G G PHAEV AL +A G +
Sbjct: 16 MDRALTLAARGPAH-GPNPRVGCVLLAPDGTVIGEGWHRGAGTPHAEVAALHDAHTRGCD 74
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATA VTLEPC+H GR+ PCAQ +++ GI VV +DDP R G + +
Sbjct: 75 PRGATAVVTLEPCNHTGRTGPCAQALVDAGITDVVHAIDDPGARSGGGADHLRAHGIRVT 134
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + +H + R +TLK A + D + + S ITG ++ H +
Sbjct: 135 SEVRAAAALELVHHWHHAVTAGRPWVTLKTATTLDGRVAASDGTSKWITGPEAREHAHSV 194
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RAQ DAI V GT LADDP LT R + + + + ++ +
Sbjct: 195 RAQVDAIAVTTGTALADDPALTARTPDGGLAAHQPLRVVVGHRDLPPGARLRDDDAETL- 253
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D+ +L L R + LLVEGG A+A + + +
Sbjct: 254 ----------------------HLRTHDVHHVLAALHDREIRHLLVEGGPALATALLAAD 291
Query: 307 LVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD + Y + +++G+G P + + G D+ +
Sbjct: 292 AVDELHAYIAPVILGDGRPAVAPFGVTTLAAAPRWHTTDTHRLGDDILVVARR 344
>gi|153845346|ref|ZP_01993762.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ3810]
gi|149745121|gb|EDM56372.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ3810]
Length = 280
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 1/222 (0%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P S D MS AL+ +R + T+ NP+V C+IV+DG+++G G G PHAEV A+
Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIVGEGYHHRAGEPHAEVHAMR 68
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L +
Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V + I L+ + ++ I LK+A S D ++ S IT ++
Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
V RAQS IL TVL D+ L R + L +
Sbjct: 189 QDVQCYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHY 230
>gi|327312630|ref|YP_004328067.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
gi|326946400|gb|AEA22285.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289]
Length = 380
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 88/387 (22%), Positives = 136/387 (35%), Gaps = 37/387 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D +M L+ +R L NP V +IV KDG +IG G G HAEV A
Sbjct: 1 MKQEKTDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG
Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM-------- 166
++ L + GI V + E E ++T R ++ LK A ++
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNTLSNTPTNT 180
Query: 167 ---------AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+ L + +
Sbjct: 181 LSNTPASPSPSPLPHREGSEHRDSTDDLSIINGSQDEITAREKKTSVAYIGNLPGKDYHP 240
Query: 218 SPMRIILDPHFKLSLDSKII-------KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ L ++ L P + V E P +
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPTREGE 300
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
+ L + + SL+VEGG SF+++ L D I + + +G+G +E
Sbjct: 301 YATPAEALAHLYEEKK-QSLVVEGGVKTLQSFLDAGLWDEIRIETAPFTVGKG-----IE 354
Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L + + + + + + Y +
Sbjct: 355 APKLREKVRITKVEKY-VNTIVTYERE 380
>gi|227504400|ref|ZP_03934449.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium striatum ATCC 6940]
gi|227199048|gb|EEI79096.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium striatum ATCC 6940]
Length = 344
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 108/352 (30%), Positives = 157/352 (44%), Gaps = 31/352 (8%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A+ + G TS NP V +I+ +G ++G G T G PHAEV AL+EAG ARG
Sbjct: 11 RAMEAGQSVRGTTSPNPPVGAVILDAEGNLVGTGATQPVGGPHAEVMALQEAGSSARGGI 70
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
A VTLEPC+H GR+ PCA+ +I I +V DP V+ G Q L GI V ++
Sbjct: 71 AVVTLEPCNHTGRTGPCAEALIAADISQVYFLHPDP-NGVAAGGAQTLRAAGIEVAQIEA 129
Query: 132 SEGKIFLHAYLTRQVE---KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
A + R H+TLK A + D + S ITG ++ VH+ RA
Sbjct: 130 PAELPVSDALIPWLTSLRLGRPHVTLKFAQTLDGFTAASDGTSQWITGEHAREWVHVDRA 189
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAI++G GT LAD+P LT R + + D+
Sbjct: 190 RRDAIIIGTGTALADNPSLTARFPDGTLREQQPRRVVIGQRNLEDA-------------- 235
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
A + Y ++ L L G +LVEGGA +A +F+N+ V
Sbjct: 236 ---------GAASSHLRELGYDQFANIDDALISLYEAGARDVLVEGGAGLASAFLNAGYV 286
Query: 309 DSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D++ Y + +++GEG + + F V G DV +EY+ +
Sbjct: 287 DAVQAYIAPLLLGEGRGVLAHPVAQTLQDARRFQRVGTTVLGDDVLIEYVRR 338
>gi|262182497|ref|ZP_06041918.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
Length = 342
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 148/357 (41%), Gaps = 35/357 (9%)
Query: 13 AALRFS----RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
AL + G TS NP V +I+ G V+G G T G PHAEV AL +AG++A
Sbjct: 12 RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 71
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RG TA VTLEPC+H GR+ PCAQ +I+ + V DP + G G L + GI V
Sbjct: 72 RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVG 130
Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ + +L R H+TLK A S D S ITG ++ VH
Sbjct: 131 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 190
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R Q DAIL+G GT LAD+P LT R D + VI
Sbjct: 191 RTQRDAILIGTGTALADNPSLTAR------------FPDGSLRP--------QQPRRVVI 230
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
R + ++ L L G +LVEGGA +A SF+
Sbjct: 231 GSRNVSHGGKTNLERLGFEHY-----ASPQEALAELYTTGARDILVEGGAGLATSFMELG 285
Query: 307 LVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
VD I Y +V+GEG + + + G D+ +EY
Sbjct: 286 FVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 342
>gi|227833015|ref|YP_002834722.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
gi|227454031|gb|ACP32784.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
Length = 332
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 111/357 (31%), Positives = 148/357 (41%), Gaps = 35/357 (9%)
Query: 13 AALRFS----RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
AL + G TS NP V +I+ G V+G G T G PHAEV AL +AG++A
Sbjct: 2 RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 61
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RG TA VTLEPC+H GR+ PCAQ +I+ + V DP + G G L + GI V
Sbjct: 62 RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVG 120
Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ + +L R H+TLK A S D S ITG ++ VH
Sbjct: 121 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 180
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R Q DAIL+G GT LAD+P LT R D + VI
Sbjct: 181 RTQRDAILIGTGTALADNPSLTAR------------FPDGSLRP--------QQPRRVVI 220
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
R + ++ L L G +LVEGGA +A SF+
Sbjct: 221 GSRNVSHGGKTNLERLGFEHY-----ASPQEALAELYTTGARDILVEGGAGLATSFMELG 275
Query: 307 LVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
VD I Y +V+GEG + + + G D+ +EY
Sbjct: 276 FVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 332
>gi|319778563|ref|YP_004129476.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
equigenitalis MCE9]
gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
equigenitalis MCE9]
Length = 379
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 104/357 (29%), Positives = 158/357 (44%), Gaps = 15/357 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-----E 65
M A S L NP V C+IV + +IG G T G HAE+ AL++A +
Sbjct: 1 MRLAYEASLKTRFLPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHED 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A YVTLEPCSH+GR+PPC +I GI+ VV+ DP+ V G G++ L GI
Sbjct: 61 LIADAILYVTLEPCSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIK 120
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V+ E + +R + + KIA S D I + S IT S+N H
Sbjct: 121 VEVGFMLEEVLELNLGFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA+S +L G GTVLAD+P+L R +P+ I+D + K+ +
Sbjct: 181 YWRARSSIVLTGAGTVLADNPKLNVRHFN-TPRAPLIGIVDRELNIITKPKLSIFSNPKV 239
Query: 245 VIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ L L +NI + +L +LL L V + +E G+ +
Sbjct: 240 YVFGEMAKVQDLGLVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGLN 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353
SF + L+D ++ Y++ +V+G P +E ++ ++V L
Sbjct: 300 TSFYEAGLIDELLWYQAPLVLGNCNSPFNIKEVESIPVDNKLEIFDIKSIKNNVRLR 356
>gi|52841411|ref|YP_095210.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52628522|gb|AAU27263.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 357
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 101/361 (27%), Positives = 161/361 (44%), Gaps = 7/361 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL ++ G + NPSV + V++G +I + G PHAE L +
Sbjct: 1 MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ G T YVTLEPC+H+G++PPC II GI VV DP+ V + L + GI
Sbjct: 61 QTPGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +F +Y + + +T+KIA + D IG + V ++ + + H
Sbjct: 121 QVRHIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNALCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA SD IL TV D+P + RL+ P+ I+D + LS D+ I T
Sbjct: 181 QMRAASDVILTSAKTVQMDNPRMNARLDSGLVAKPV-AIVDRNLSLSDDTIIFST-AKHC 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + DL+ ++T L G + VE G A+ + +
Sbjct: 239 HIYHQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHLGQLGYHDVWVEAGGAIFSALHS 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCLQ 362
LV LY +G I + ++G EK V G ++ CL++ ++ CL
Sbjct: 299 KGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHT-VSWQAMGDNMIACLDW-QEDECLP 356
Query: 363 E 363
+
Sbjct: 357 D 357
>gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 598
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 92/368 (25%), Positives = 162/368 (44%), Gaps = 21/368 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
SS D+R + A + GL++ +P+ C+I V+G G G AEVQA+E A
Sbjct: 22 SSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGPKVVGEGFLYAQGTKSAEVQAVERA 81
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE A+ ATAY+ LEP +G + + E G+ RVVV V P + G+ ++ L Q G
Sbjct: 82 GELAKNATAYLNLEPGDCHG-DDSAVRALREAGVSRVVVGVPHPLQHLHGKAIKALHQGG 140
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-------------RSHITLKIAVSQDNMIGMAGCG 170
V+ + ++ + + + + LK A++ D I +
Sbjct: 141 AKVEVVGQNLLESGSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVDGKIAASTGH 200
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
S ++ S+ +V +RA+SDAI+VG TV D+P LT R G P+RI++ L
Sbjct: 201 STWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTTRQEGGHL--PVRIVMSRCLNL 258
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+D+ + + ++ + + + ++ D + ++ RG S+
Sbjct: 259 PMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFDFLTPRAVMDYCYNRGYLSI 318
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDY 345
L E G ++ I S ++ ++ + S +IG P+P+ E V +
Sbjct: 319 LWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGELGMVEMTQALQLSDVAFEQ 378
Query: 346 FGSDVCLE 353
G D+ +
Sbjct: 379 VGPDMLVT 386
>gi|323436092|ref|ZP_08088234.1| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
gi|321496407|gb|EAQ38739.2| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134]
Length = 346
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 100/362 (27%), Positives = 157/362 (43%), Gaps = 39/362 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
++ + ++ + NPSV ++V + +I G T+ G PHAEV + A
Sbjct: 15 KIHNTYIKRCIALAKNGLPAAMPNPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAK 74
Query: 65 EE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+T YV+LEPCSH+G++PPCA +I+ GI+RVV+ DP +V+G G++ L
Sbjct: 75 ANTPELIAKSTLYVSLEPCSHWGKTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLM 134
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITG 176
Q G+ V + E E + + T EKR I LK A + + I A IT
Sbjct: 135 QAGVDVTVGVLEKECQEVNKRFFTYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITN 194
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
S+ VH LR++ ILVG TV+ D+P LT R +P RI++D L K+
Sbjct: 195 SHSRQLVHKLRSKEMGILVGGKTVIEDNPTLTTR--DWHGSNPTRIVIDTQGNLPK--KL 250
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
AP I++ ++D + L + S++VEGGA
Sbjct: 251 HIFNNEAPTIVLKDSDPK----------------------SICKELFEHNIQSVIVEGGA 288
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
A FI++ L D ++ G + ++ F + D Y
Sbjct: 289 ATLQRFIDAALWDEASVFT-----GLTNFNAGIKAPKKTSQFTLQSSQHVQGDRLDIYTR 343
Query: 357 KN 358
+
Sbjct: 344 SD 345
>gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM
2246]
Length = 355
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 108/350 (30%), Positives = 165/350 (47%), Gaps = 11/350 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + G NP V +++ G +G G G PHAEV AL+ AG ARG
Sbjct: 1 MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC H+G++PPC ++ G+ RVV + DP RV+G GL L G+ V
Sbjct: 61 GTLLVTLEPCCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGVDVQVG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
E++ + YL R + K A++ D + S I+G S+ +VH LR
Sbjct: 121 LCEADARALNAPYLKLLSTGRPWVHAKWAMTLDGKLAARTGDSKWISGAESRRRVHELRG 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAILVG GTV+ADDP LT R P R++L +L ++ TA APV++
Sbjct: 181 RLDAILVGRGTVVADDPLLTAR--PAGVRVPARVVLTASGELPAACQLRATAREAPVLVY 238
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+P + ++ L +L L R T++L+EGGA + + ++ +
Sbjct: 239 --TANPGKLGGWAADGAEVVGFGELTLDAVLADLGRRRFTNVLLEGGAGLLGAARDADAI 296
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353
D ++ + V+G +P+ + V + G+DV +
Sbjct: 297 DEFHVFIAPKVVGGSAALTPVGGTGAARMAEALTLEGVTFEPSGADVYVH 346
>gi|312113516|ref|YP_004011112.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
17100]
gi|311218645|gb|ADP70013.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC
17100]
Length = 398
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 118/357 (33%), Positives = 176/357 (49%), Gaps = 13/357 (3%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
AL ++ ++G TS NPSV ++ G +I TA GG PHAEV AL EAG+ A+G
Sbjct: 35 RRALFVAQTNIGATSPNPSVGAVVADARTGEIIASAATARGGRPHAEVLALREAGDRAKG 94
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A TLEPCSH+G +PPCA I+ GI ++ DPD RV GRGL +++Q G+ R
Sbjct: 95 ALIITTLEPCSHFGATPPCAHSIVNAGISHLIYGSLDPDTRVGGRGLTYVAQHGVRATRG 154
Query: 130 MESEGKIFLHAYLTR---QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ + +L E+R + +K+AV + + V ITG +++ HLL
Sbjct: 155 TPAFVRDCDWLHLGHSLRVTERRPFVQVKLAVDAAGFVPLGNGKPVFITGDVARAAAHLL 214
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA++DAILVG TV ADDPELTCRL GL + SP+R++L + +K+ I
Sbjct: 215 RARADAILVGRKTVEADDPELTCRLPGLADRSPVRVVLASRCNVPPAAKLFANERPPVWI 274
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLLVEGGAAVAHSFI 303
+ ++ + + I L + + G+T LLVEGG + A FI
Sbjct: 275 VCGDSTEGAAFFGRPGVRVLDIGASLTGRLNLRLAMMRVAAEGITRLLVEGGPSTARGFI 334
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
++ L D +I+ + + P + L+ F + G+D Y
Sbjct: 335 DAGLADEVIIMQGTQTLDPQAGMPPFGDRGLDLVAASPQFTLFDKRKAGADTISIYR 391
>gi|111024118|ref|YP_707090.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
gi|110823648|gb|ABG98932.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1]
Length = 350
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 107/353 (30%), Positives = 168/353 (47%), Gaps = 34/353 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ + G TS NP+V +++ G + G G+T G PHAEV AL EAG+ ARG
Sbjct: 14 MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARG 73
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128
TA VTLEPC+H+GR+ PC+Q +++ G+ V V DP+ + G + L G+ V
Sbjct: 74 GTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNP-EAAGGAETLISAGVEVTSG 132
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + L A+L RQ R H+T K A + D A S ITG ++ +VH R
Sbjct: 133 LRAQDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADR 192
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
A+ DAI+VG GTVLADDP LT R+ ++ + D++++ + ++
Sbjct: 193 AKLDAIVVGTGTVLADDPRLTARMPDGSLAAHQPVRVVVGLGDIPADARVLDDSAPTLLL 252
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D+ + ALA T +L+EGG +A +F+ +
Sbjct: 253 RTHDVDEVLAALA--------------------------EYTDVLLEGGPRLAGAFLAAG 286
Query: 307 LVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD I Y + +++G G + + F + GS++ L +
Sbjct: 287 RVDRIQAYLAPLILGAGTSAVAEAGVHTIDGALRFRHESVETIGSELLLSLVP 339
>gi|326520824|dbj|BAJ92775.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 468
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 149/358 (41%), Gaps = 19/358 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG
Sbjct: 122 DMDAHYMRRCVELARTAAGHTSPNPMVGCVIVREGKVVGEGFHPKAGQPHAEVFALRDAG 181
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A ATAYV+LEPC+HYGR+PPC++ +I+ ++ VVV + DP+ V+ +G++ L GI
Sbjct: 182 DLAENATAYVSLEPCNHYGRTPPCSEALIKAKVKEVVVGMTDPNPIVASKGIEKLRNAGI 241
Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E + L+ ++ ++ TL+ +S + ++ G
Sbjct: 242 DVRVGVEEALCLRLNEAYIHRMLTGKAFATLRATLSMNGIVINQIGSGTDQPG---GYYS 298
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
L + I+ P + + + + +
Sbjct: 299 QLAKEYDGVIISSDMAKATALPMSREAGAKQPLYIIIAQGQGSKLDIPFLDEESAS---- 354
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--AA 297
+ +++ D +L+ +L +L RG+ S+LV+ GG A+
Sbjct: 355 -----NAIVLADSPVTVEPAGVSVSVLDQMNLESILQLLADRGLCSVLVDFRDAGGVLAS 409
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ F +LV ++L S + + G G V + LE
Sbjct: 410 LLSKFQEDKLVQKVVLELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLEGY 467
>gi|54294122|ref|YP_126537.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Lens]
gi|53753954|emb|CAH15425.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Lens]
Length = 357
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 100/361 (27%), Positives = 161/361 (44%), Gaps = 7/361 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL ++ G + NPSV + V++G +I + G PHAE L +
Sbjct: 1 MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ G T YVTLEPC+H+G++PPC II GI VV DP+ V + L + GI
Sbjct: 61 QTPGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +F +Y + + +T+KIA + D IG + V ++ + + H
Sbjct: 121 QVRHIPIKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNSLCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA SD IL TV D+P + RL+ P+ I+D + LS D+ I T
Sbjct: 181 QMRAASDVILTSAKTVQMDNPRMNARLDTGLVAKPV-AIVDRNLSLSDDTIIFST-AKHC 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + +L+ ++T L G + VE G A+ + +
Sbjct: 239 HIYHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHS 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCLQ 362
LV LY +G I + ++G EK V G ++ CL++ ++ CL
Sbjct: 299 KGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHT-VSWQAMGDNMIACLDW-QEDECLP 356
Query: 363 E 363
+
Sbjct: 357 D 357
>gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
Bt4]
Length = 306
Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats.
Identities = 107/306 (34%), Positives = 153/306 (50%), Gaps = 9/306 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++
Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLTARLLE 240
Query: 239 TALLAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
L + A A R + DL +L L RG+ L VE
Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300
Query: 295 GAAVAH 300
G +
Sbjct: 301 GHKLNG 306
>gi|307609932|emb|CBW99459.1| riboflavin biosynthesis protein RibD [Legionella pneumophila 130b]
Length = 357
Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats.
Identities = 99/361 (27%), Positives = 161/361 (44%), Gaps = 7/361 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL ++ G + NPSV + V++G +I + G PHAE L +
Sbjct: 1 MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ G T YVTLEPC+H+G++PPC II GI VV DP+ V + L + GI
Sbjct: 61 QTPGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +F +Y + + +T+K+A + D IG + V ++ + + H
Sbjct: 121 QVRHIPIKAIDVFYKSYAYWTMTHKPRVTVKMAQTFDGKIGKSEGARVVLSNALCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA SD IL TV D+P + RL+ P+ I+D + LS D+ I T
Sbjct: 181 QMRAASDVILTSAKTVQMDNPRMNARLDSGLVAKPV-AIVDRNLSLSDDTIIFST-AKHC 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + +L+ ++T L G + VE G A+ + +
Sbjct: 239 HIYHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHS 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCLQ 362
LV LY +G I + ++G EK V G ++ CL++ ++ CL
Sbjct: 299 KGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHT-VSWQAMGDNMIACLDW-QEDECLP 356
Query: 363 E 363
+
Sbjct: 357 D 357
>gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205]
Length = 345
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 46/361 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
D FM L+ ++ NP V +IV DG +IG G G HAEV A
Sbjct: 21 EIDEMFMRRCLQLAKNGRENAKPNPMVGAVIVSGDGRIIGEGYHVRCGEGHAEVNAFASV 80
Query: 64 G----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AT YV+LEPCSHYG++PPCA I+ G++R V DP +V GRG++ +
Sbjct: 81 KPEDEHLLSQATIYVSLEPCSHYGKTPPCADLIVRKGVKRCVCGCVDPFAKVQGRGIRKI 140
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + E+E ++T +R +I LK A + + + G + I+
Sbjct: 141 REAGIEVTVGVLEAECLELNKRFITFNTHQRPYIILKWAQTANGFL-DNGGRGMAISSPF 199
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+K H LRA++DAIL+G T D +L R ++ + I
Sbjct: 200 TKMLSHKLRAENDAILIGRVTDERDHSQLNVRDWSGKDPMRLVI---------------- 243
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ ++ L++++ L V SL+VEGGA
Sbjct: 244 -----------------DRHHPCFEGLDFSRGKTEVLQQIMQYLYNNKVQSLIVEGGAIT 286
Query: 299 AHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+++ L D I R++ ++ E + S L N + + + +V Y
Sbjct: 287 HQAFLDAGLWDEI---RAETLLSTSVENSVTSGTPAPMLPHNVRLISHEAYDGNVINTYE 343
Query: 356 G 356
Sbjct: 344 R 344
>gi|282859870|ref|ZP_06268958.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
gi|282587273|gb|EFB92490.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010]
Length = 314
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 104/362 (28%), Positives = 160/362 (44%), Gaps = 55/362 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
M D +M L+ + L NP V +IV + G +IG G G HAEV A
Sbjct: 1 MERQDIDEMYMRRCLQLATNGKLLAKPNPMVGAVIVSNEGRIIGEGYHVRCGEEHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E +T YV+LEPCSH+G++PPCA II+ G++RVV DP +V GRG
Sbjct: 61 FASVRKEDESLLSDSTIYVSLEPCSHFGKTPPCANLIIKKGVKRVVCGCVDPFSKVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+Q + + GI V + E+E + + ++T ++R +I LK A +++ +G+ G I
Sbjct: 121 IQRIREAGIEVTVGVLEAECLVLNNRFITFNTQERPYIILKWAQTENGFMGVKGGVLK-I 179
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+ +K VH LR++ DAILVG T + P+L R + + +
Sbjct: 180 STPFTKMLVHKLRSECDAILVGRNTEEQESPQLNVRDWSGRNPQKVVLSST--------- 230
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ D+ LL L +L+VEG
Sbjct: 231 ---------------------------------LPTAIHDIPSLLQQLYHDKCQTLIVEG 257
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA +FI S + D I + S + GI +P L K+ +R++YFG+ V Y
Sbjct: 258 GATTLETFIRSGMYDEIRVEVSPTTV-REGIKAP----QLPKDVSVIRKEYFGN-VITTY 311
Query: 355 IG 356
Sbjct: 312 QR 313
>gi|315607126|ref|ZP_07882130.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
gi|315251180|gb|EFU31165.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574]
Length = 322
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 97/328 (29%), Positives = 139/328 (42%), Gaps = 55/328 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +FM L+ +R NP V +IV DG +IG G G HAEV A
Sbjct: 9 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVCP 68
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + +
Sbjct: 69 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 128
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E E ++ R +ITLK A + D + ++PI+ +K
Sbjct: 129 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDD-HGRALPISSPFTK 187
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LRA++DAILVG T + P L R + + +
Sbjct: 188 MLSHKLRAENDAILVGRVTEEREHPRLNVREWSGPDPERIVL------------------ 229
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ +L L SLLVEGGA
Sbjct: 230 -----------------------------GHGASVTGILARLYEEKKQSLLVEGGAQTLQ 260
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328
SF+++ L D + + + I +G G P+P
Sbjct: 261 SFLDADLWDELRVETAPITVG-DGTPAP 287
>gi|237737703|ref|ZP_04568184.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium mortiferum ATCC 9817]
gi|229419583|gb|EEO34630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Fusobacterium mortiferum ATCC 9817]
Length = 358
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 108/372 (29%), Positives = 181/372 (48%), Gaps = 35/372 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------------VTAYGGCP 53
D ++M+ AL + G + NP + G P
Sbjct: 1 MDKKYMARALELAALGEGSVNPNP------------LVGAVVVKDGVVVGEGYHKKYGGP 48
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAEV ALE AGE+A GA YVTLEPCSHYG++PPCA+ IIE GI+R +V DP+ VSG
Sbjct: 49 HAEVFALEMAGEKAYGADIYVTLEPCSHYGKTPPCAKKIIEMGIKRCIVASLDPNPLVSG 108
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSV 172
RG++ L GI V + L+ + + EK+S++ LK ++ D I S
Sbjct: 109 RGIKMLQDAGIEVVTGVMEREAKELNRVFMKYISEKKSYLFLKCGITLDGKIATKTGNSK 168
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
IT +++ +V LR + I+VGI TVL DDP LT R+ ++ RI++DP ++ L
Sbjct: 169 WITNELAREKVQRLRNRYMGIMVGINTVLKDDPSLTARIENGRDPY--RIVIDPKLEIPL 226
Query: 233 DSKIIKTALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+SKI+ VII ++ + + L ++ + + D ++ ++L G+
Sbjct: 227 ESKIVNFEDGKSVIITSQENRESEKIKILEEKRVRVEYLEGDEFEVSEILKKTGELGIDG 286
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRD 344
+++EGG+ + +D ++ + ++G+ S + +E V+ +
Sbjct: 287 IILEGGSYLISKAFKENAIDGGEIFIAPKILGDSEAISFVRGFSVENIADGFELKNVKIN 346
Query: 345 YFGSDVCLEYIG 356
+G++V +E+
Sbjct: 347 SYGNNVSMEFYK 358
>gi|257055601|ref|YP_003133433.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharomonospora viridis DSM 43017]
gi|256585473|gb|ACU96606.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharomonospora viridis DSM 43017]
Length = 349
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 115/352 (32%), Positives = 162/352 (46%), Gaps = 30/352 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL S G TS NP V +I+ +G +G G T PHAEV AL EAGE ARG
Sbjct: 15 MEVALALSAGVRGNTSPNPPVGAVILDAEGRRVGTGATQPPPGPHAEVVALREAGERARG 74
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPCSH+GR+PPC Q +++ G+ V V DP + G + L G+ V
Sbjct: 75 GTAVVTLEPCSHHGRTPPCTQALLDAGVAAVRYAVADPHP-AASGGAERLRAAGVDVAGG 133
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E L A+L R+ R H+T K A S D + A S I+G S+ +VH LR
Sbjct: 134 VLAEEVASGPLRAWLHRERTGRPHVTWKYAASLDGRVAAADGTSRWISGPTSRAEVHALR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A DAI+VG GTVL DDP LT R + + + + + + + V
Sbjct: 194 AAVDAIVVGTGTVLTDDPWLTVRTPDGELAPRQPLRVVVGTRGIPEGARVLDSTAETV-- 251
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
D ++L +L RGV +L+EGG +A +F+ +
Sbjct: 252 ---------------------RIASHDPDEVLALLSERGVVDVLLEGGPTLAGAFVAAGR 290
Query: 308 VDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD II Y + ++G G P+ + ++ G DV + +
Sbjct: 291 VDRIIAYVAPTLLGAGPAALGPAGVSTITQAHHWRVEGATMCGEDVRISAVP 342
>gi|325860399|ref|ZP_08173511.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
18C-A]
gi|325482057|gb|EGC85078.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS
18C-A]
Length = 380
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 87/387 (22%), Positives = 138/387 (35%), Gaps = 37/387 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D +M L+ +R L NP V +IV KDG +IG G G H+EV A
Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHSEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG
Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
++ L + GI V + E E ++T R ++ LK A ++ +
Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNILFNTPTNT 180
Query: 175 TGFISKNQVHLLRAQSDAIL-----------------VGIGTVLADDPELTCRLNGLQEH 217
+ + + +
Sbjct: 181 LSNTPASPSPSPLPHREGSKHRDSPDDLSIINGSQDEITAREKKTSAAYIGNLPGKDYHP 240
Query: 218 SPMRIILDPHFKLSLDSKII-------KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ L ++ L P + V E P +
Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPTREGE 300
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
+ L + + SL+VEGGA SF+++ L D I + + + + GI +P
Sbjct: 301 YATPAEALSHLYEEKK-QSLVVEGGAKTLQSFLDAGLWDEIRIETAPFTV-DKGIEAP-- 356
Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L + + + + + + Y +
Sbjct: 357 --KLPEKLRITKVEKY-VNTIVTYERE 380
>gi|220925141|ref|YP_002500443.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
2060]
gi|219949748|gb|ACL60140.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS
2060]
Length = 388
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 134/367 (36%), Positives = 189/367 (51%), Gaps = 15/367 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQA 59
S+ D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE A
Sbjct: 9 SALDRRYMRLALALGRRHLGETWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERIA 68
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AGE ARGAT YVTLEPCSH+GR+ PCA ++E GI RVV + DPD RV+GRG L
Sbjct: 69 LAAAGEAARGATLYVTLEPCSHHGRTSPCADAVVEAGIARVVSAMADPDPRVAGRGHGRL 128
Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
S GI V + H ++TR R I LK+A + D + ITG +
Sbjct: 129 SAAGIAVTVGTLGQEAARDHLGHVTRVTAGRPAIDLKLARTPDGFAAGGTG-RLIITGPL 187
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ ++HL+RA SDAI+VG+ TVLADDPELT RL GL + SP+R++LDP + S++++
Sbjct: 188 ANARIHLMRAHSDAIMVGVETVLADDPELTVRLPGLGDRSPVRVVLDPALRTPPQSRLLR 247
Query: 239 TALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
T+ P +I+ P A + + L+ L L RG T +
Sbjct: 248 TSDRVPTLILCGPAAPPEAERAIRAAGADVARMPVDPDGRLQLRAALHGLGERGFTRVFC 307
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349
EGG +A++ L+D+ ++ + G+P+ L + F G D
Sbjct: 308 EGGPTLANALARHGLIDTCLIVTGARPLDRAGLPAIGPDLADLLASGAFGLAEETRAGPD 367
Query: 350 VCLEYIG 356
+ Y
Sbjct: 368 LFTSYAR 374
>gi|148240028|ref|YP_001225415.1| riboflavin biosynthesis protein ribD
(diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. WH 7803]
gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Synechococcus sp. WH 7803]
Length = 372
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 114/350 (32%), Positives = 173/350 (49%), Gaps = 9/350 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL + G TS NP V +++ G+++G G A G PHAEV AL +AG AR
Sbjct: 14 WMRRALALAALADGHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVGALAQAGAAAR 73
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H+GR+PPCA +I+ GI RVVV + DPD RV+G GLQ L G+ V
Sbjct: 74 GGTIIVTLEPCCHHGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQRLRDAGVEVIS 133
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E+E A++ R R LK A+S D ++ S I+G +++ VH LR
Sbjct: 134 GVLEAEAAHQNLAFVYRVRTGRPWGVLKWAMSLDGRTALSNGASQWISGPSARSWVHRLR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
AQ DA++VG GTV ADDP LT R GL+ P+R++L L +++ ++ +++
Sbjct: 194 AQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRSLDLPDQAQLWDQSVAPTLVV 251
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + + + L+ +L RG +L E G +A + I
Sbjct: 252 HGLDAPAGARSRLDAVGVQRQELQACEPEALMAVLAQRGCNRVLWECGPGLAAAAIQQGC 311
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352
V I + ++G +PL + +++ D+ L
Sbjct: 312 VQDIAAVIAPKLLGGEPARTPLGTLGFQAMNEVLELQGLQQQRLADDLLL 361
>gi|242347654|gb|ACS92631.1| conserved hypothetical protein [Triticum aestivum]
Length = 396
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 93/357 (26%), Positives = 154/357 (43%), Gaps = 17/357 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG
Sbjct: 50 DMDAHYMRRCVDLARTAAGHTSPNPMVGCVIVREGEVVGEGFHPKAGQPHAEVFALRDAG 109
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A ATAYV+LEPC+HYGR+PPC + +I+ I+ VVV + DP+ V+ +G++ L GI
Sbjct: 110 DLAENATAYVSLEPCNHYGRTPPCTEALIKAKIKEVVVGMTDPNPIVASKGIEKLRNAGI 169
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E + L+ ++ +T K + + M G I + +
Sbjct: 170 DVRVGVEEALCLRLNEAYIHRM-----LTGKAFATLRTTLSMNGIVINQIGSGADQPGGY 224
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + V I + +A L + II + + +
Sbjct: 225 YSQLAKEYDGVVISSDMAKATTLPISQEAGAKQPLYIIIAQGEGSKLHIPFLDEESASNA 284
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--AAV 298
+++ +A +++ D +L +L IL RG+ S+LV+ GG A++
Sbjct: 285 IVLADS------PVAVEPSGVSVSVLDEMNLDSILRILADRGLCSVLVDFRDAGGALASL 338
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
F +LV +++ S + + G G V + LE
Sbjct: 339 LKDFQEDKLVQKVLVELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLEGY 395
>gi|294675036|ref|YP_003575652.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
gi|294472928|gb|ADE82317.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23]
Length = 307
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 103/357 (28%), Positives = 142/357 (39%), Gaps = 59/357 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +FM ++ ++ NP V +IV +G +IG G G HAEV A
Sbjct: 3 DDKKFMQRCIQLAKNGQLNAKPNPMVGAVIVHNGRIIGEGYHVRCGLAHAEVNAFASVRA 62
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E +T YV+LEPCSHYG++PPCA IIE G+RRVVV D V GRG+Q L
Sbjct: 63 EDEALLPESTIYVSLEPCSHYGKTPPCADLIIEKGVRRVVVGCIDEFAEVQGRGIQKLRD 122
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V+ + E E K + T EKR +I LK A + + I V I+ +K
Sbjct: 123 AGIEVEVGVLEDECKALNRRFFTFHREKRPYIILKWAQTANGFIDDHH-QPVQISSDFTK 181
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LRA+ DAILVG T + P+L R + M I
Sbjct: 182 MLSHKLRAEEDAILVGRVTDEREHPQLNVREWYGPDPKRMVIDRAHPLN----------- 230
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
L L + + S++VEGG
Sbjct: 231 --------------------------------------LESLHAQNIQSIIVEGGTETLQ 252
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
SFI L D + + + + G +P L + +G +V + Y K
Sbjct: 253 SFIVQGLWDELRVETNTSLTVSDGTRAP----QLPASAQVASSHIYGKNVIVVYQRK 305
>gi|326693482|ref|ZP_08230487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Leuconostoc argentinum KCTC 3773]
Length = 352
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 144/343 (41%), Gaps = 23/343 (6%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSH 81
T NP V +IVKD V+ G G HAE+ A A +A+G T YVTLEPC+
Sbjct: 21 QTFENPRVGAVIVKDNQVLAVGWHERFGGAHAEINAFHHLGAAHDAQGGTLYVTLEPCAV 80
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
G+ CA+ I + G+ RVV+ DP+ G G+Q L GI V + + + A+
Sbjct: 81 RGKVAACAETIRDWGLARVVIGDLDPNPTTHGLGVQKLRAAGISVVVLDTDDSRQLNPAF 140
Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
+ + +I LK A S + + IT ++ VH RA+ AI+VG T +
Sbjct: 141 YQYHEQHQPYIQLKSAQSHNGYVSAVRGQRSKITDAVADLDVHRQRARHSAIIVGSETWV 200
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
D P LT R L P R+++ + LA D V +
Sbjct: 201 IDQPRLTVRDVMLTHQQPQRVVIYRRGR------------LAHEPATRLKDWLVYTENAQ 248
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ L ++ L +G+ S++VEGG + SF+ ++L ++Y + ++
Sbjct: 249 FAQQENVELMTAGLPGVMADLGRKGMQSVMVEGGPILITSFLQAQLWHECLIYTADRLLP 308
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL--CLQ 362
+G L + G Y+ + + CLQ
Sbjct: 309 DGVRGIVLPQLPD-------DIQRIGHTQRQRYVNQEVATCLQ 344
>gi|288800423|ref|ZP_06405881.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
str. F0039]
gi|288332636|gb|EFC71116.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299
str. F0039]
Length = 341
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 97/363 (26%), Positives = 148/363 (40%), Gaps = 58/363 (15%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
++ R+M + + NP V +IV DG +IG G G HAEV A
Sbjct: 30 NATHERYMQRCIDLALNGKEGAKPNPMVGSVIVVDGRIIGEGYHIEYGKAHAEVNAFASV 89
Query: 64 GEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ AT YV LEPCSH+G++PPCA II G+++VVV DP V GRG++ L
Sbjct: 90 DAKDEHLLPKATLYVNLEPCSHFGKTPPCADLIISKGVKKVVVGCVDPYSEVRGRGIERL 149
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ G+ V + E E ++T +R +I LK A + D I + I+
Sbjct: 150 RKAGVKVLVGVLEKECLFLNRFFITSNTHQRPYIILKWAQTLDGFI-DCDGEATAISIPF 208
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ VH LRA+SDAILVG T + P L R Q+ + + K
Sbjct: 209 TSMLVHKLRAESDAILVGNNTEKKERPRLNVRHWSGQDPKKVVLSSKTTLK--------- 259
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+LL+ L + SL+VEGG
Sbjct: 260 --------------------------------------ELLSSLHAENIQSLMVEGGLKT 281
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+SFI + L D I + + +G G +P + N + + + + ++ ++
Sbjct: 282 HNSFIEADLWDEIHIETAPFTVG-NGTHAP----QIPANAKLIEHEDWDGNQTFVFVKES 336
Query: 359 LCL 361
L
Sbjct: 337 GLL 339
>gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 392
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 125/354 (35%), Positives = 179/354 (50%), Gaps = 7/354 (1%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
RFM ALR + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG AR
Sbjct: 27 RFMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALAR 86
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
GA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V
Sbjct: 87 GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAVVK 146
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
++ + + T E+R +TLK AV+ D I + ++G ++ VH LR
Sbjct: 147 GVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRLR 206
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DA+LVG GT ADDP LT R P+R++LD L + + AP ++
Sbjct: 207 DRVDAVLVGAGTARADDPRLTTR-LPRGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLV 265
Query: 248 VTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
P + DL+ LL L RGV LLVEGGA V F+ +
Sbjct: 266 AHAAPAPARPYGPGVELLRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEAG 325
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356
LVD + ++ + + G G+P G V + G DV + +
Sbjct: 326 LVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLDQVAFERVGDDVLVTGVP 379
>gi|148358764|ref|YP_001249971.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Corby]
gi|296106809|ref|YP_003618509.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
Alcoy]
gi|148280537|gb|ABQ54625.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str.
Corby]
gi|295648710|gb|ADG24557.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99
Alcoy]
Length = 357
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 99/361 (27%), Positives = 158/361 (43%), Gaps = 7/361 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL ++ G + NPSV + V++G +I + G PHAE L +
Sbjct: 1 MHEQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ T Y+TLEPC+H+G++PPC II GI VV DP+ V + L + GI
Sbjct: 61 QTPEVTLYITLEPCNHWGKTPPCVDAIINHGIEEVVFAYFDPNPIVAKSNSSEKLREHGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + F +Y + + +T+KIA + D IG + V ++ + + H
Sbjct: 121 QVRHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA SD IL TV D+P + RL+ P+ I+D + LS D+ I T
Sbjct: 181 QMRAASDVILTSAKTVQMDNPRMNARLDSGVVAKPV-AIVDRNLSLSDDTIIFST-AKHC 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
I + + DL ++T L G + VE G A+ + +
Sbjct: 239 HIYHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHS 298
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCLQ 362
LV LY +G I + ++G EK V G ++ CL++ ++ CL
Sbjct: 299 KGLVHRTYLYLVPGSLGHQAISAYQQQGIFEKAHT-VSWQAMGDNMIACLDW-QEDECLP 356
Query: 363 E 363
+
Sbjct: 357 D 357
>gi|120403674|ref|YP_953503.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
PYR-1]
gi|119956492|gb|ABM13497.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii
PYR-1]
Length = 333
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 111/353 (31%), Positives = 159/353 (45%), Gaps = 34/353 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+AA+ S G T NP V +I+ +DG + G G TA G PHAEV AL AGE A G
Sbjct: 7 MAAAIEQSERVKGRTYPNPPVGAVILDRDGEIAGVGATAPPGGPHAEVVALRRAGERAVG 66
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H+GR+PPC +++ GI V V DPD V+ G L++ G+ V
Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALLDAGIAEVAFAVADPDP-VAAGGAARLAESGVRVSAG 125
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +L +Q H+T K A S D A S IT ++ VH R
Sbjct: 126 VLAADVTGGPLREWLHKQRTGMPHVTWKFATSVDGRSAAADGSSQWITSEAARADVHRRR 185
Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
A +DAI+VG GTV DDP LT R +G ++ ++S D+ ++ VI
Sbjct: 186 ATADAIIVGTGTVFVDDPALTARLPDGSLADHQPLRVVVGKREISPDATVLNDDSRTMVI 245
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + ALA R T + VEGG +A +F+ +
Sbjct: 246 RTHNPHEVIKALADR--------------------------TDVFVEGGPTLAGAFLRAG 279
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++D I+ Y + I++G + + + G DV L
Sbjct: 280 VIDRILAYVAPILLGGPITAVDDVGVLSIAQAQRWRFDGMTAVGPDVLLSLTP 332
>gi|297804068|ref|XP_002869918.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297315754|gb|EFH46177.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 426
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 84/357 (23%), Positives = 150/357 (42%), Gaps = 11/357 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE
Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I+ ++RVVV + DP+ VS G+ L GI
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVSSSGISRLKDAGID 192
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E E K ++ R + ++ + L+ ++S + S
Sbjct: 193 VTVGVEEELCKKMNEGFIHRMLTEKPFLALRYSMSVNGCFLDKIG----EGASDSGGYYS 248
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + DAI++ + + I+ + + + P
Sbjct: 249 KLLQEYDAIILSSSLSDELSSISSQEATNVSIQPIQIIVARNAQQSPILASSNTVEESGP 308
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------V 298
+++ + + + + + +L +L RG+ S+L++ +
Sbjct: 309 KVVLFTAKELLAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVL 368
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+L+ +I+ + + K ++ G +V LE
Sbjct: 369 LRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKQVKDLQSKQLGGNVLLEGY 425
>gi|331012488|gb|EGH92544.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 249
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 101/243 (41%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R + +I +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLD 246
Query: 234 SKI 236
+
Sbjct: 247 APF 249
>gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
Length = 385
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 112/365 (30%), Positives = 170/365 (46%), Gaps = 11/365 (3%)
Query: 8 ARF-MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
R+ M A+R + TS NP V C+++ DG G G G PHAEV+AL AG
Sbjct: 18 ERWAMRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGG 77
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A G TA VTLEPC+H GR+ PC + + G+ RVV V+DP SG + + +
Sbjct: 78 RAAGGTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASGGAERLAAGGVEV 137
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V + E + +LT +R +T K A + D A S IT ++ H
Sbjct: 138 VGGLHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHA 197
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + V
Sbjct: 198 LRAVHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLV 256
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
++ +P A D DL L L RGV S+L+EGGA +A F+
Sbjct: 257 VVSDRAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAG 316
Query: 306 RLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK---- 357
LVD ++ Y + + +G G+P + G D+ + +
Sbjct: 317 GLVDRVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPEPRDL 376
Query: 358 NLCLQ 362
+ CL+
Sbjct: 377 DACLR 381
>gi|326404513|ref|YP_004284595.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acidiphilium multivorum AIU301]
gi|325051375|dbj|BAJ81713.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acidiphilium multivorum AIU301]
Length = 363
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 138/362 (38%), Positives = 195/362 (53%), Gaps = 10/362 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+
Sbjct: 2 DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G
Sbjct: 62 AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V+ + +E + E R +TLK+A S D I S ITG ++ H
Sbjct: 122 VVEGIGGAEAAEINAGFCKCIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P
Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241
Query: 245 VIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ IV + A + DL L + G+T +L EGG +A
Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAAVGEAGLTRVLAEGGGTLA 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + LVD + + + +VIG+ GI + +EE F + G D+ Y
Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361
Query: 356 GK 357
Sbjct: 362 RD 363
>gi|31792603|ref|NP_855096.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Mycobacterium bovis AF2122/97]
gi|121637339|ref|YP_977562.1| putative bifunctional riboflavin biosynthesis protein RIBG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|215426746|ref|ZP_03424665.1| putative bifunctional riboflavin biosynthesis protein RIBG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis T92]
gi|224989814|ref|YP_002644501.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|260186348|ref|ZP_05763822.1| putative riboflavin biosynthesis protein [Mycobacterium
tuberculosis CPHL_A]
gi|260200464|ref|ZP_05767955.1| putative riboflavin biosynthesis protein [Mycobacterium
tuberculosis T46]
gi|289442854|ref|ZP_06432598.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
T46]
gi|289447005|ref|ZP_06436749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
CPHL_A]
gi|289749967|ref|ZP_06509345.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
T92]
gi|31618192|emb|CAD94305.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase) +
5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
reductase) [Mycobacterium bovis AF2122/97]
gi|121492986|emb|CAL71457.1| Probable bifunctional riboflavin biosynthesis protein RIBG :
Diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772927|dbj|BAH25733.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|289415773|gb|EFD13013.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
T46]
gi|289419963|gb|EFD17164.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
CPHL_A]
gi|289690554|gb|EFD57983.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
T92]
Length = 339
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 105/358 (29%), Positives = 157/358 (43%), Gaps = 35/358 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T NP V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q H+T K A S D A S I+ ++
Sbjct: 126 LQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARL 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTA 240
+H RA +DAILVG GTVLADDP LT RL ++ + +++++
Sbjct: 186 DLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDIPPEARVLNDE 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I E + + AL+ R T +L+EGG +A
Sbjct: 246 ARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPTLAG 279
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ + ++ I+ Y + I++G + + + G D+ L +
Sbjct: 280 AFLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 337
>gi|215430296|ref|ZP_03428215.1| putative bifunctional riboflavin biosynthesis protein RIBG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis EAS054]
gi|289753491|ref|ZP_06512869.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
gi|289694078|gb|EFD61507.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054]
Length = 339
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 157/358 (43%), Gaps = 35/358 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T NP V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q ++T K A S D A S I+ ++
Sbjct: 126 LQVRSGVLAEQVAAGPLREWLHKQRTGLPYVTWKYATSIDGRSAAADGSSQWISSEAARL 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTA 240
+H RA +DAILVG GTVLADDP LT RL ++ + +++++
Sbjct: 186 DLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDIPPEARVLNDE 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I E + + AL+ R T +L+EGG +A
Sbjct: 246 ARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPTLAG 279
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ + ++ I+ Y + I++G + + + G D+ L +
Sbjct: 280 AFLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 337
>gi|94498080|ref|ZP_01304643.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
gi|94422515|gb|EAT07553.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58]
Length = 317
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 125/352 (35%), Positives = 173/352 (49%), Gaps = 45/352 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+AA+ SR GL++ NP+V CLIV+DG V+GRG T GG PHAE QAL++A E+AR A
Sbjct: 1 MAAAIALSRRGRGLSTPNPNVGCLIVRDGRVVGRGWTQKGGRPHAEAQALDQAMEQARDA 60
Query: 71 TAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TAYVTLEPC H P CA + G+ RVV+ + DPD R +G+G WL +G+ V+
Sbjct: 61 TAYVTLEPCFHLSPRGPRCADLLARAGVARVVIALRDPDPRTNGQGAAWLRDRGVAVEMG 120
Query: 130 MESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++ A RQ R H+TLK+ +S D I +A S ITG ++ HL RA
Sbjct: 121 LLADEAAAAMAGFVLRQTLGRPHVTLKLGLSLDGRIALANGSSRWITGPQARAHAHLERA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAILVG GT+ AD P L RL GL++ +P R++L +I +A +
Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRAPRRLLLTRGPAPGNWERIGAPEEIATLDR- 239
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
V LLVEGGA A +F+ + L+
Sbjct: 240 --------------------------------------VDHLLVEGGAGAAAAFLRADLI 261
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIG 356
D ++LYR+ I+IG+G + G D Y
Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLGDLAQAHGRWRLTDGRTLGVDKLEVYER 313
>gi|330899666|gb|EGH31085.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 301
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 102/270 (37%), Positives = 141/270 (52%), Gaps = 11/270 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ VV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTGVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R +P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKK 263
+ + V + +
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEM 276
>gi|42524894|ref|NP_970274.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bdellovibrio bacteriovorus HD100]
gi|39577104|emb|CAE78333.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bdellovibrio bacteriovorus HD100]
Length = 394
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 99/373 (26%), Positives = 172/373 (46%), Gaps = 27/373 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG-E 65
MS A+ + S NP V +++ G + G + G PHAEV AL+ E
Sbjct: 19 EEAMSLAISEAYQGAARVSPNPLVGAVVLDAQGGFLSAGHHEFYGGPHAEVNALKNLSPE 78
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK--- 122
+ +GA A+VTLEPC+H G++P CA+ + + +++V + DP+ V+G+G + L Q
Sbjct: 79 QLKGAHAFVTLEPCAHEGKTPSCAKMMAKLPLKKVTFGLIDPNPLVAGQGAEILRQARIE 138
Query: 123 -------GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
++D +++E + A+L +K+ ++LK+A S D + + S IT
Sbjct: 139 AEVFSSANPVLDAKIKTELEEVCEAFLWNFRKKKVFVSLKMASSLDGQVALRSGESQWIT 198
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI----------ILD 225
G S+ VH +RA D ILVG GT+ D+P L R + + + + +
Sbjct: 199 GPESREYVHYIRACHDGILVGKGTIDFDNPSLNIRHPQITKKNKVIVVDGEAELLPNFTK 258
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
S+ + + + E L + + DL+ LL L +
Sbjct: 259 LKLSEVHASEDVIWCVAEELREKVEKLRGTLVKSPDVVYVKTRVGGDLDLEDLLAQLYQK 318
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMC 340
G+ S++VEGGA A SF++ LV+ + ++++ I++G GG S + +
Sbjct: 319 GLRSVMVEGGAFTASSFVSYHLVNRLYMFQAPIIMGSGGSRSWTESVRISAMTDKIQLKN 378
Query: 341 VRRDYFGSDVCLE 353
R FG+D +
Sbjct: 379 PRYLTFGNDFMIT 391
>gi|330888055|gb|EGH20716.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori
str. 301020]
Length = 276
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 101/270 (37%), Positives = 140/270 (51%), Gaps = 11/270 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAS 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R + +I +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG----------LQEHSPMRIILDPHFKLSLD 233
LRAQS +L G TVLAD LT R + P+R+++D ++ LD
Sbjct: 187 QRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLD 246
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKK 263
+ + V + +
Sbjct: 247 APFFQAGSALVVTCAAASARGRYQEEGHEM 276
>gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
Length = 383
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 106/367 (28%), Positives = 161/367 (43%), Gaps = 20/367 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GE 65
FM A+ +R G TS P V ++V++ VIGRG T+ PHAE+ AL EA
Sbjct: 3 HLEFMQKAIACARSIEGRTSPRPPVGAVLVRENQVIGRGATSPPYGPHAEIHALREAETT 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GA Y TLEPC +PPC II GI+RV++ DP+ +VSGRG+ L + GI
Sbjct: 63 AAVGADLYTTLEPCCITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIE 122
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + E E + + T + R ++T K A++ D + + I+G ++ VH
Sbjct: 123 VITTIAEPETAALIRPFATYITQGRPYVTAKWAMTLDGKLASHTGDASWISGSAARTWVH 182
Query: 185 LLRAQSDAILVGIGTVLADDP---------ELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
LR + DAI++G+GT ADDP + H + + L
Sbjct: 183 QLRDRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQRPNHLRIVVSSRGELNAQLQLF 242
Query: 236 IIKTALLAPVIIVTENDDPV----LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ A VI+ + + + DL L IL R + LL
Sbjct: 243 QKQLAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQTGRVDLMAALHILGQREIMHLL 302
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
+EGG+++ S +L+D + + + +IG G PSP+ L V
Sbjct: 303 LEGGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPIGGAGLAIMQHAHRLQQVSFQTV 362
Query: 347 GSDVCLE 353
D+ +E
Sbjct: 363 AEDLLIE 369
>gi|303238038|ref|ZP_07324581.1| riboflavin biosynthesis protein RibD [Prevotella disiens
FB035-09AN]
gi|302481828|gb|EFL44880.1| riboflavin biosynthesis protein RibD [Prevotella disiens
FB035-09AN]
Length = 335
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 143/361 (39%), Gaps = 34/361 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M D +M L+ ++ NP V +IV DG +IG G G HAEV A
Sbjct: 3 MKQEDRDEMYMCRCLQLAKNGRLNAKPNPMVGAVIVSHDGKIIGEGYHVRCGEGHAEVNA 62
Query: 60 LEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+T YV+LEPCSHYG++PPCA I+ G+RR+V DP V GRG
Sbjct: 63 FHSVRPTDEHLLSESTIYVSLEPCSHYGKTPPCADLIVRKGVRRMVCGCVDPFSEVQGRG 122
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
++ + Q GI V + + +A++++ ++ +
Sbjct: 123 IERIRQAGIEVKVGVLEQE--------------------CLALNREFIVRNTLHRPYILL 162
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ + + ++A G + ++ + + + +
Sbjct: 163 KWAQTEDGFIGYSAAEAAEKGTLFISNGFTKMLVHKLRAAYDGIVVGRVTNDLEQPKLTV 222
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ I++T + + +N+ + ++ + + + V S++VEGG
Sbjct: 223 REWSGANPLKIVMTSKAETMQNA---DENVLFVSSPKAMIEAIGKLERTKPVCSVIVEGG 279
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A SFI+ L D I + + I +G + L +N V+R+++G+ + + Y
Sbjct: 280 AQTLQSFIDENLFDEIRVETAPFSIHKG-----VAAPQLPQNIEVVKREFYGNSI-VTYK 333
Query: 356 G 356
Sbjct: 334 R 334
>gi|85372857|ref|YP_456919.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
HTCC2594]
gi|84785940|gb|ABC62122.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis
HTCC2594]
Length = 325
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 124/344 (36%), Positives = 165/344 (47%), Gaps = 46/344 (13%)
Query: 21 HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
+++ NP+V C+IVK VIGRG T GG PHAE ALE+AG++ARGAT YVTLEPC+
Sbjct: 21 GRPVSAPNPAVGCIIVKQDRVIGRGWTRVGGRPHAEAAALEQAGQDARGATIYVTLEPCA 80
Query: 81 HYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
H P CA ++ +RVV+ DPD R G G+ L + GI V+ + L
Sbjct: 81 HESDRGPSCADLLVAARPQRVVLAEVDPDRRTHGAGIARLRRSGITVETLPSPAAAASLA 140
Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
+LTR+ R H+TLK+A+S D I +A S ITG ++ H RA SDAILVG GT
Sbjct: 141 GFLTRERLGRPHVTLKLALSLDGCIALASGESQWITGEEARAHCHSRRAMSDAILVGGGT 200
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
AD P L RL GL++ SP R++L
Sbjct: 201 WRADKPRLDVRLPGLEDRSPQRVVLTRG-------------------------------- 228
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+ R + + I L VEGGA A SF+ LVD + +YR+ IV
Sbjct: 229 -------VPIDGVRIINEPAQIDRLEAAQYLYVEGGAGAAASFLAENLVDRLDIYRAPIV 281
Query: 320 IGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
IG G P+ G + ++ V R GSD Y +
Sbjct: 282 IGG-GKPAFGNIGLADLTSAHGSWKLVERRQLGSDCYEAYERQR 324
>gi|119716673|ref|YP_923638.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Nocardioides sp. JS614]
gi|119537334|gb|ABL81951.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Nocardioides sp. JS614]
Length = 345
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 92/364 (25%), Positives = 139/364 (38%), Gaps = 31/364 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + NP V C+++ DG + G G HAE AL AG ARG
Sbjct: 1 MRRALELAAAPGVPLGPNPRVGCVLLDEDGRTVAEGHHRGAGTAHAEADALARAGVRARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA VTLEPC+H GR+ PCAQ +I G+RRVV DP+ + G L G+ V+
Sbjct: 61 ATAVVTLEPCNHTGRTGPCAQALIGAGVRRVVFAQPDPNP-AAAGGADTLRAAGVDVESG 119
Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ L+ + R +T K A + D A S ++ ++ H LRA
Sbjct: 120 LLHVESGLLNRFWAFGLAHGRPFVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHRLRA 179
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ D +LVG T+ DDP LT R + + + + + A
Sbjct: 180 RCDVMLVGTNTIEVDDPLLTVRDEHDRPLEHQPLRAVMGERDLDPGRRVFDQRPA----- 234
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
++ RD +K L L + +EGG +A +F+ + LV
Sbjct: 235 --------------NGAESVHLRTRDPEKALAELAALDRQHVFLEGGPTLAAAFLKAGLV 280
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFG------SDVCLEYIGKNL 359
D I+ Y + +++G G + +V L
Sbjct: 281 DEIVAYVAPMLLGSGRAAVGDLGIPTIAQAFRPRVTDVTVLEGLDGEQPNVRLTLTPSEP 340
Query: 360 CLQE 363
+
Sbjct: 341 RAEG 344
>gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL
2338]
Length = 364
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 111/361 (30%), Positives = 168/361 (46%), Gaps = 10/361 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+R + TS NP V C+++ DG G G G PHAEV+AL AG A G
Sbjct: 1 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PC + + G+ RVV V+DP SG + + +V +
Sbjct: 61 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASGGAERLAAGGVEVVGGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E + +LT +R +T K A + D A S IT ++ H LRA
Sbjct: 121 HREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRAV 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + V++
Sbjct: 181 HDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVSD 239
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+P A D DL L L RGV S+L+EGGA +A F+ LVD
Sbjct: 240 RAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGLVD 299
Query: 310 SIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK----NLCL 361
++ Y + + +G G+P + G D+ + + + CL
Sbjct: 300 RVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPEPRDLDACL 359
Query: 362 Q 362
+
Sbjct: 360 R 360
>gi|330943560|gb|EGH45897.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 245
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 90/196 (45%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + ESE + +L R ++ +K+A+S D MA S ITG +++ V
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAV 186
Query: 184 HLLRAQSDAILVGIGT 199
LRAQS +L G T
Sbjct: 187 QRLRAQSSVVLSGADT 202
>gi|296140262|ref|YP_003647505.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
DSM 20162]
gi|296028396|gb|ADG79166.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola
DSM 20162]
Length = 332
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 107/348 (30%), Positives = 148/348 (42%), Gaps = 32/348 (9%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A+ S G+++ NP V +I+ DG V GRG TA G PHAEV AL EAG+ ARG T
Sbjct: 13 LAIEESVAARGVSTPNPPVGAVILAADGTVAGRGRTAPAGGPHAEVVALAEAGDAARGGT 72
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
A VTLEPC H GR+ PC Q +I GI RV DP+ V+ G L G+ V +
Sbjct: 73 AVVTLEPCDHTGRTGPCTQALIAAGIARVAYAAADPNP-VAAGGAATLRSAGLDVTHLGV 131
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
L +L RQ R +T+K+A + D I S ITG ++ +VH RAQ D
Sbjct: 132 EP--WPLTEWLFRQRHGRPMVTVKLAATVDGRIAAPDGTSQWITGPAARARVHAERAQLD 189
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
AI+VG GTV DDP LT + S + +
Sbjct: 190 AIIVGTGTVAVDDPALTA-------------------RRPDGSLYRHQPNRIVIGDREVS 230
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
+ A K + L + + VEGG+ V +F+ + LVD +
Sbjct: 231 SGAKIFAAPGKVVRVHGHDPRAALAAAADAV------HVQVEGGSTVIGAFLAAGLVDRV 284
Query: 312 ILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
Y + +++G G + + G DV L +
Sbjct: 285 QAYIAPVLLGAGLAALSVPGIGTLGDALRMRLDSVERLGDDVLLTLLR 332
>gi|256831920|ref|YP_003160647.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
20603]
gi|256685451|gb|ACV08344.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM
20603]
Length = 354
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 100/358 (27%), Positives = 144/358 (40%), Gaps = 41/358 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
M+ AL + G+ NP V +IV + G V G G HAEV AL A G
Sbjct: 1 MNVALEQA--ARGVRGANPLVGAVIVDEHSGDV-AVGHHRGRGTAHAEVDALRCARDRGL 57
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
AT YVTLEPC+HYG +PPC I++ GI RVV+ +DP V+ G L G++
Sbjct: 58 RLDAATMYVTLEPCNHYGVTPPCTDAILDAGIPRVVIAGEDPHD-VAAGGAHTLRAAGVV 116
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
VD + +LT Q E+R I KIA S D S ITG ++ H
Sbjct: 117 VDIVPLDAAVSLNERWLTAQRERRPFIRAKIAQSLDGFSAALDGTSQWITGPQAREYAHK 176
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAI+VG GTVLA + P+
Sbjct: 177 QRHLVDAIVVGTGTVLA--------------------------DQPTLTARYDPGGAQPL 210
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + R + ++ D L RG +L+EGG + +F+ +
Sbjct: 211 RVHMGHTTTPPDAPIRGADGRFVHLPTHDPNLAAHQLYERGARDILIEGGPRLIGAFLEA 270
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFM---CVRRDYFGSDVCLEYIGK 357
LVD + +Y + +++G G + L F+ + G D+ YI +
Sbjct: 271 GLVDLLEVYTAPMLLGGGTTSTALSSVASLGDALRFLPDPIAQPMRLGVDLLTHYIPR 328
>gi|260204674|ref|ZP_05772165.1| putative riboflavin biosynthesis protein [Mycobacterium
tuberculosis K85]
gi|289574078|ref|ZP_06454305.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
K85]
gi|289538509|gb|EFD43087.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
K85]
Length = 339
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 104/357 (29%), Positives = 152/357 (42%), Gaps = 33/357 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T NP V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q H+T K A S D A S I+ ++
Sbjct: 126 LQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARL 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+H RA +DAILVG GTVLADDP LT RL + + + L +
Sbjct: 186 DLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDILPEARVLNDE 245
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + ++L L R T +L+EGG +A +
Sbjct: 246 ART-----------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGA 280
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
F+ + ++ I+ Y + I++G + + + G D+ L +
Sbjct: 281 FLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 337
>gi|227549213|ref|ZP_03979262.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078667|gb|EEI16630.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium lipophiloflavum DSM 44291]
Length = 324
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 105/358 (29%), Positives = 149/358 (41%), Gaps = 38/358 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
+S D AAL G TS NP V C + +G +I G T+ G HAE+ AL
Sbjct: 1 MSEIDYH---AALSAGDAVRGATSPNPPVGCALFSPEGELIATGGTSPAGGAHAEINALR 57
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG ARGATA VTLEPC+H GR+ PCA+ + + I R+V DP+ + +G G +L++
Sbjct: 58 AAGSRARGATAVVTLEPCNHTGRTGPCAKALADAQIARLVYLTTDPNPQAAG-GADYLAR 116
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V L +LT R +TLK A S D S ITG ++
Sbjct: 117 HGVEVVFEPRRVDA--LVPWLTSIERGRPSVTLKYAASLDGFTAAPDGTSKWITGPAARR 174
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA DAI++G GT +AD+P LT R + + + + + + +
Sbjct: 175 HVHADRAVRDAIIIGTGTAIADNPSLTARYDDGSLMATQPRRVVVGTRAVPEGNLTRLGF 234
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
L L G +LVEGGA +A S
Sbjct: 235 E----------------------------QYATPDDALEALWESGARDVLVEGGAGLAAS 266
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ LVD + Y + +++G G P + G DV +E
Sbjct: 267 FLEQGLVDRVQAYAAPLLLGAGTHVVPAALAATLAEAPRYRLTHVTVLGDDVLIEMER 324
>gi|188582604|ref|YP_001926049.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
BJ001]
gi|179346102|gb|ACB81514.1| riboflavin biosynthesis protein RibD [Methylobacterium populi
BJ001]
Length = 359
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 140/358 (39%), Positives = 189/358 (52%), Gaps = 12/358 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL R ++G T NPSV ++V DG ++G+ VTA GG PHAE AL AGE ARG
Sbjct: 1 MRLALALGRRNLGRTWPNPSVGAVVVTPDGRIVGQAVTAPGGRPHAEPLALAMAGEAARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YVTLEPCSH+GR+PPC + I G+ RVV ++DPD RV+GRG L GI V+
Sbjct: 61 ATLYVTLEPCSHHGRTPPCTEATIRSGVARVVTAIEDPDPRVAGRGHAGLRAAGIAVETG 120
Query: 130 MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E H +V K R + LK+A ++D + + ITG I+ VHL RA
Sbjct: 121 LLREEAARDHRGHFSRVTKGRPSLHLKLARTRDGFAAPSTGERLKITGAIADGAVHLWRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A P +++
Sbjct: 181 HADAIMVGIGTARADDPSLTVRLPGLTERSPLRIVLDSTLRLNPASHLVRGARDLPTLVL 240
Query: 249 TENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
T P A + DL L L RG+T + EGG A+A +
Sbjct: 241 TGRGAPAHARRMLASFGVEIAFVPTDAQGRIDLPAALAALAERGLTRICSEGGPALADAL 300
Query: 303 INSRLVDSIILYRSQIVIGE-GGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L+D+ L + +GE GG+P+ L + +F V G D Y
Sbjct: 301 AAHDLIDACTLITGAVALGEAGGLPALGPNLARRLADGSFATVETRDLGPDTATTYER 358
>gi|284991537|ref|YP_003410091.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
43160]
gi|284064782|gb|ADB75720.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM
43160]
Length = 358
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 110/362 (30%), Positives = 170/362 (46%), Gaps = 29/362 (8%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M VS+ + M+ A +G TS NP+V +++ DG +G G TA G PHAEV+A
Sbjct: 1 MTVSAAELSAMARARELGAGVLGTTSPNPAVGAVVLAADGTPVGEGATAPPGGPHAEVRA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
LE+AGE A G TA VTLEPC+H GR+ PCA ++ G+ RVVV V +P +++G G L
Sbjct: 61 LEQAGERACGGTAVVTLEPCAHTGRTGPCADALLAAGVARVVVAVPEP-TQLAGGGAARL 119
Query: 120 SQKGIIVDRMMESEGKIFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
G+ V+ + + A+LT E R + K+A + D + A S +TG
Sbjct: 120 RAAGVEVELGVAQQAAEEGALGAWLTGVREGRPFVVWKVAGTLDGRVAAADGSSRWVTGP 179
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ VH LRA DA+++G GT LADDP+LT R ++ + + + + L
Sbjct: 180 DARAAVHRLRATCDAVVIGSGTALADDPQLTVRDADGRDAARQPLRVVLDRRRRLPRTAR 239
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
AP ++ T ++LL L R V +L+EGG
Sbjct: 240 VLDDAAPTLVSTAAS----------------------PRELLGELFARDVRRVLLEGGPT 277
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+A +F+ LVD +++ + ++G G + + G DV +
Sbjct: 278 LAAAFLRDGLVDEAVVHLAPKLLGAGAPLVGDLGITGIGNALTLTVTGLTHLGGDVEIRL 337
Query: 355 IG 356
Sbjct: 338 RP 339
>gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis
thaliana]
Length = 426
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 11/357 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE
Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E E K ++ R + + + L+ ++S + + S
Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIG----QGASDSGGYYS 248
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + DAI++ + + I+ + + + P
Sbjct: 249 KLLQEYDAIILSSSLSDELSSISSQEAINVSIQPIQIIVASNAQQSHILASSHTVEESGP 308
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------V 298
++V + V + + + +L +L RG+ S+L++ +
Sbjct: 309 KVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVL 368
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+L+ +I+ + + K+ ++ G V LE
Sbjct: 369 LRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 425
>gi|18415600|ref|NP_567618.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|26452452|dbj|BAC43311.1| unknown protein [Arabidopsis thaliana]
gi|29824151|gb|AAP04036.1| unknown protein [Arabidopsis thaliana]
gi|332658979|gb|AEE84379.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arabidopsis thaliana]
Length = 426
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 11/357 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE
Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E E K ++ R + + + L+ ++S + + S
Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIG----QGASDSGGYYS 248
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + DAI++ + + I+ + + + P
Sbjct: 249 KLLQEYDAIILSSSLSDELSSISSQEAINVSIQPIQIIVASNAQQSHILASSHTVEESGP 308
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------V 298
++V + V + + + +L +L RG+ S+L++ +
Sbjct: 309 KVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVL 368
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+L+ +I+ + + K+ ++ G V LE
Sbjct: 369 LRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 425
>gi|5262786|emb|CAB45891.1| putative protein [Arabidopsis thaliana]
gi|7268893|emb|CAB79096.1| putative protein [Arabidopsis thaliana]
gi|45268463|gb|AAS55854.1| pyrimidine deaminase [synthetic construct]
Length = 363
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 149/357 (41%), Gaps = 11/357 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE
Sbjct: 10 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 69
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI
Sbjct: 70 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 129
Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E E K ++ R + + + L+ ++S + + S
Sbjct: 130 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIG----QGASDSGGYYS 185
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + DAI++ + + I+ + + + P
Sbjct: 186 KLLQEYDAIILSSSLSDELSSISSQEAINVSIQPIQIIVASNAQQSHILASSHTVEESGP 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------V 298
++V + V + + + +L +L RG+ S+L++ +
Sbjct: 246 KVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLEVL 305
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+L+ +I+ + + K+ ++ G V LE
Sbjct: 306 LRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 362
>gi|281424669|ref|ZP_06255582.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
gi|281401039|gb|EFB31870.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302]
Length = 318
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 89/355 (25%), Positives = 141/355 (39%), Gaps = 44/355 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
+M L+ + NP V +IV +IG G G HAEV A
Sbjct: 3 HEYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPE 62
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q +
Sbjct: 63 DEKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122
Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G +V +ME E ++T R +I LK A + + I + ++ +++
Sbjct: 123 GIEVVVDVMEQECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQM 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+++A+LVG T L D P L R + + + +
Sbjct: 182 LVHQLRAENEAVLVGHTTFLTDHPRLDVRQWSGRNPERIVLSPTMAARK----------- 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + +++ L SL+VEGG +
Sbjct: 231 ----------------------ERPKGWTVAATIDEIIAHLYAEKKQSLVVEGGRKTLQA 268
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FI L D I + + I+I G+ +P + + + +Y + +
Sbjct: 269 FIERGLWDEIRVETAPIMI-TEGVAAP----HFPTHAHIEKTEYIDGNQIITLCR 318
>gi|50954248|ref|YP_061536.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950730|gb|AAT88431.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 341
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 101/351 (28%), Positives = 157/351 (44%), Gaps = 29/351 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68
M AALR + NP V C+++ DG I +G G PHAE AL + E AR
Sbjct: 7 MRAALRLAANG-PAAGVNPRVGCVLLDADGRTIAKGFHRGAGTPHAEADALGKLPEGGAR 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G TA VTLEPC+H+GR+ PC++ +++ G+ RVV + DP R G + +
Sbjct: 66 GTTAVVTLEPCNHWGRTGPCSEALLDAGVARVVYGIADPGERSRGGAERLRQGGVEVTGG 125
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
++ +E + FL +LT R HIT+K A S D A S ITG ++ +VH R
Sbjct: 126 VLAAEIEEFLDDWLTVARLGRPHITVKWASSLDGRTAAADGTSRWITGTAARQRVHEQRE 185
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
SDAI+VG GTVLADDP LT R + + + + + ++
Sbjct: 186 ASDAIVVGTGTVLADDPSLTARGDAGELLPRQPTPVVVGTRAVPGDAAVFRHPQPVIVE- 244
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
DL +++ L RG + VEGG ++ +F+ + LV
Sbjct: 245 ----------------------KTHDLVEVVADLHQRGFRRVYVEGGPTLSGAFVAAGLV 282
Query: 309 DSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
D +Y + ++G + + ++ + + G D+ L +
Sbjct: 283 DEYAIYLAPSLLGGPQLALGDIGVTTIGEQRRLRLLNVERLGGDLHLRAVP 333
>gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
K601]
gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
K601]
Length = 370
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 164/359 (45%), Gaps = 13/359 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A G
Sbjct: 7 FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L GI
Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +R V + +K A S D + +A S IT ++ H
Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L GIGTVL DDP L R P +++D + L +++
Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREVAT-PRQPHLVVVDSRLQTPLGARLFDVPGRRV 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHS 301
I + + I+ + R L +L G V L +E G + S
Sbjct: 246 FIYAADGHPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNGS 305
Query: 302 FINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ LVD ++LY + +++G G PL+ G D+ L
Sbjct: 306 FLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRLIARV 364
>gi|291334222|gb|ADD93888.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase
[uncultured marine bacterium MedDCM-OCT-S08-C1463]
Length = 348
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 78/342 (22%), Positives = 136/342 (39%), Gaps = 17/342 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
D+ F+S A+ V C+IVK+ +IGRG G HAE+ A+ + E
Sbjct: 3 DSFFISEAISLGLKGRFTAKPGVKVGCVIVKENRIIGRGFYEKYGGSHAEINAINDVKEK 62
Query: 66 -------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ G+ +VTLEPCS G++ C + + +R+VV DP + G+
Sbjct: 63 YKKNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIVVGTKDP----TQNGINN 118
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
L G + + + + ++ + + + K+A+S D+ A ITG
Sbjct: 119 LQSAGYELKNLNNQQCQALNESFFHKVKSNKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDS 234
++N V LRA++D IL G GT+ D+P + R P R + L+ +
Sbjct: 179 ARNNVQTLRAEADIILTGAGTINEDNPSMNVRSKKIIANKNFVQPERYVFSNSLNLNWSA 238
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
K V+ +N + + + + + V ++L+E
Sbjct: 239 PFFKLPGKKVVVTSKKNLPKLPQGINDISLMSLKKNSNSLSSEDFIKRISKLNVNNILIE 298
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
G + SF + L+D I Y S +G + + L
Sbjct: 299 AGPRLLGSFGDYGLIDEYIFYISPEKLGTKALHFYGGDKQLN 340
>gi|326331206|ref|ZP_08197500.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
Broad-1]
gi|325950976|gb|EGD43022.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium
Broad-1]
Length = 352
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 99/318 (31%), Positives = 146/318 (45%), Gaps = 29/318 (9%)
Query: 11 MSAALRFSRWHVGL---TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M AL + T NP V C+++ DG +I G G PHAEV AL +AGE
Sbjct: 11 MRRALDLAAAIGAPGPATYPNPRVGCVLLGADGSMIAEGYHRGPGTPHAEVDALAKAGEA 70
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATA VTLEPC+H GR+ PC+Q +IE G+ RVV DP+ V+ G L Q G+ V
Sbjct: 71 ARGATAVVTLEPCNHTGRTGPCSQALIEAGVARVVYAQSDPNP-VAAGGAATLKQAGVEV 129
Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
++ +E + + +R ++T K A + D A S ++ ++ H
Sbjct: 130 EQGLYAAEARELNRVWTRAAELQRPYVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHK 189
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA SD +LVG TV DDP LT R + + + + + + I A +
Sbjct: 190 LRALSDTMLVGTNTVAVDDPALTVRDLEDRPVGVQPLRVVMGERDLPEDRRIFDAQAPSL 249
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ RD L L R + +EGG +A +F+ +
Sbjct: 250 -----------------------HLRTRDPHSALAALWERERRHVFLEGGPTLAAAFLEA 286
Query: 306 RLVDSIILYRSQIVIGEG 323
LVD I++Y + ++G G
Sbjct: 287 GLVDEIVVYVAPFLLGAG 304
>gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans
BC]
gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
BC]
Length = 370
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 164/359 (45%), Gaps = 13/359 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65
F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A G
Sbjct: 7 FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L GI
Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126
Query: 126 VDRMME-SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + + + +R V + +K A S D + +A S IT ++ H
Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA++ A+L GIGTVL DDP L R P +++D + L +++
Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREVAT-PRQPHLVVVDSRLQTPLGARLFDVPGRRV 245
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHS 301
I + + I+ + R L +L G V L +E G + S
Sbjct: 246 FIYAADGPPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNGS 305
Query: 302 FINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ LVD ++LY + +++G G PL+ G D+ L
Sbjct: 306 FLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRLIARV 364
>gi|225454196|ref|XP_002273879.1| PREDICTED: similar to cytidine/deoxycytidylate deaminase family
protein [Vitis vinifera]
Length = 379
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 95/361 (26%), Positives = 158/361 (43%), Gaps = 16/361 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG
Sbjct: 26 EDDGFYMRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAG 85
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A ATAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI
Sbjct: 86 DLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGI 145
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E E K AY+ + + + +TL+ ++S + I +
Sbjct: 146 EVTVAVEEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLG----EGVEEAGGYY 201
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
L + DAI++ TV + + P+ I++ I T +
Sbjct: 202 SQLVQEYDAIILSPTTVTEKFSFPASQ--EPGANQPLHILIAKSPISPNQIPIPHTEATS 259
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------ 297
VII +N+ V +K I + D +L +L +G+ S+L++
Sbjct: 260 KVIIFADNETAV-EPEMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLDLRGNFGYFED 318
Query: 298 VAHSFINSRLVDSIILYRSQIVI--GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + L+ +++ E G+P L+ + V LE
Sbjct: 319 LLKQSLEENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVVLEGY 378
Query: 356 G 356
Sbjct: 379 P 379
>gi|307564973|ref|ZP_07627490.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
gi|307346286|gb|EFN91606.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A]
Length = 313
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 107/362 (29%), Positives = 161/362 (44%), Gaps = 55/362 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M + D +M L+ ++ + L NP V +IV +G +IG G G HAEV A
Sbjct: 1 MELKEIDEMYMRRCLQLAKNGMLLAKPNPMVGAVIVSDNGRIIGEGYHICYGKEHAEVNA 60
Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
++ +T YV LEPCSH+G++PPCA II+ G+ RVV DP VSGRG
Sbjct: 61 FASVRKKDEHLLSKSTIYVNLEPCSHFGKTPPCADLIIKKGVGRVVCGCIDPFSVVSGRG 120
Query: 116 LQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+Q + + GI V + E E ++T +KR +I LK A + + IG+ + I
Sbjct: 121 VQRIREAGIPVSVGVLERECLALNKRFITFNTKKRPYIILKWAQTANGFIGIK-GDVLKI 179
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+ +K VH LRA++DAI+VG T + + P+L R K+ L S
Sbjct: 180 STSFTKMLVHKLRAENDAIIVGRNTEMLEHPQLNVRKWWG----------KSPLKVVLSS 229
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + P LL L R S+++EG
Sbjct: 230 TLPEAIHDIPT--------------------------------LLNELHRRMCQSVIIEG 257
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA +FI + L D I + S + I + GI +P L + V+++YF +V Y
Sbjct: 258 GAMTLENFIKNDLYDEIRVEESSLTI-KEGIKAP----QLPTDIRVVKKEYF-DNVITTY 311
Query: 355 IG 356
Sbjct: 312 KR 313
>gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens
T118]
gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodoferax ferrireducens T118]
Length = 377
Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 105/345 (30%), Positives = 164/345 (47%), Gaps = 21/345 (6%)
Query: 27 TNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81
NP V C++ ++ +G+G T G HAE+ AL +A G GATAYVTLEPCSH
Sbjct: 25 PNPRVGCVMTDCRENT-LGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSH 83
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-----KI 136
+GR+ PC +I GI++VV + DP+ VSG+G + L G+ V+ M + +
Sbjct: 84 HGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVEVMPADDPLAIASRE 143
Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
+ +R + K + LK+A S D + S IT ++ H RA++ A+L G
Sbjct: 144 LNIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTG 203
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
IGTVL D+P L RL P +I+D + LD+ + + + +N+
Sbjct: 204 IGTVLTDNPRLDVRLVDT-PRQPHLVIVDSRLETPLDAALFTPGRVIYLYAAVQNEAKKA 262
Query: 257 ALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
AL R + + DL +L L R + L VE G + SFI LVD
Sbjct: 263 ALETRGATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVDE 322
Query: 311 IILYRSQIVIG-EGGIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352
++Y + ++IG G+ + P+ + N + G D+ +
Sbjct: 323 YLVYLAPMLIGLGSGMANFGPITQLEDAVNLRFHSIEPVGDDLRI 367
>gi|239978360|ref|ZP_04700884.1| putative riboflavin/cytosine deaminase [Streptomyces albus J1074]
gi|291450256|ref|ZP_06589646.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
gi|291353205|gb|EFE80107.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074]
Length = 378
Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 162/367 (44%), Gaps = 17/367 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + +G TS NP V C+++ G G G G PHAE+ AL EAG+ ARG
Sbjct: 14 MRRALELAARGLGTTSPNPVVGCVVLDAHGEQAGEGWHRRAGGPHAEIHALREAGDRARG 73
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PCAQ +++ GI RVV V DPD ++ G L G +
Sbjct: 74 GTALVTLEPCNHTGRTGPCAQALLDAGISRVVYAVADPDP-LAEGGAATLRAAGAETSQG 132
Query: 130 MESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + ++A T R H+T K A + D A S IT ++ VH LRA
Sbjct: 133 LLAAEAEQVNAAWLTSVRRGRPHVTWKYAATLDGRTAAADSTSRWITSAEARADVHRLRA 192
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDSKIIKTA---LLAP 244
++DA+LVG GT ADDP L RL +P + + AP
Sbjct: 193 EADAVLVGAGTARADDPHLAARLPAPAPDAPAPVQPLRIVLDSDATAVRPGARVLDDAAP 252
Query: 245 VIIVTENDDPVLALAFRKKN---INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
++ D L DL LL L R V S+L+EGGA +A +
Sbjct: 253 TLVAVAGDADARHLEGHPHVELLRLPRTNGGLDLTALLAALHARSVRSVLLEGGARLAGA 312
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
F+ + VD ++ Y + ++G G P L G + G D+ + +
Sbjct: 313 FVAAGAVDRVVGYLAPALLGAG--PQVLTGGGISTIADALRLDITDARRIGPDLRITAVP 370
Query: 357 KNLCLQE 363
+E
Sbjct: 371 ATSLTKE 377
>gi|108799353|ref|YP_639550.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
gi|119868469|ref|YP_938421.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
gi|126435011|ref|YP_001070702.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
gi|108769772|gb|ABG08494.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS]
gi|119694558|gb|ABL91631.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS]
gi|126234811|gb|ABN98211.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS]
Length = 333
Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 106/353 (30%), Positives = 160/353 (45%), Gaps = 34/353 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+ A+ + G T NP V +I+ DG V G G T G PHAEV AL AG +A G
Sbjct: 7 MALAVEQADRVKGGTYPNPPVGAVILDADGEVAGVGATQPPGGPHAEVMALRRAGRKAAG 66
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H+GR+PPC ++ + VV V DP+ V+ G L + G+ V
Sbjct: 67 GTAVVTLEPCNHHGRTPPCVDALLAAEVSAVVYAVPDPNP-VAAGGAARLGESGVTVTAG 125
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ ++ L +L +Q + H+T K A S D A S IT ++ VH R
Sbjct: 126 VLGDAVAGGVLREWLHKQRTGKPHVTWKFATSVDGRSAAADGSSQWITSEAARTDVHRRR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVI 246
A +DAI+VG GTVL DDP LT RL ++ ++S DS+++ VI
Sbjct: 186 AVADAIVVGTGTVLVDDPVLTARLPDGSLAERQPLRVVVGKREISSDSRVLNDDSRTMVI 245
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + + AL+ R T +++EGG +A +F+ +
Sbjct: 246 RTRDPQEVLRALSDR--------------------------TDVILEGGPTLAGAFLRAG 279
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+D I+ Y + I++G + + + G DV L +
Sbjct: 280 AIDRIVAYVAPILLGGPVTAVDDVGVLSIAHAQRWRFDGITPIGPDVLLSLVP 332
>gi|291518541|emb|CBK73762.1| riboflavin biosynthesis protein RibD [Butyrivibrio fibrisolvens
16/4]
Length = 257
Score = 157 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 97/254 (38%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
D +M AL ++ G + NP V +IVKDG++IG G G HAE AL++
Sbjct: 3 DKTYMLRALELAKLGAGFVNPNPMVGAVIVKDGVIIGEGYHEKYGQLHAERNALKDCRER 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G + GAT YVTLEPC HYG++PPC + I+E I RVV+ D + V+G+G L + G
Sbjct: 63 GNDPAGATMYVTLEPCCHYGKTPPCTEAIVESRINRVVIGTLDVNPVVAGKGADILREHG 122
Query: 124 IIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
I V+ +E E K + + KR ++ +K A++ D I S IT ++
Sbjct: 123 IRVEVGLLEKECKKLNRVFNKYMLSKRPYVVMKYAMTADGKIATVTGESKWITSDEAREN 182
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH LR I+VG+ TV+ D+P L CRL+ +P+RII D H + LDSK+++TA
Sbjct: 183 VHRLRKNLSGIMVGVTTVITDNPSLDCRLDE-PAVNPVRIICDSHLRTPLDSKVVETAGG 241
Query: 243 APVIIVTENDDPVL 256
II T +DD
Sbjct: 242 IKTIIATSSDDEKK 255
>gi|145640611|ref|ZP_01796194.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
gi|145274537|gb|EDK14400.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
22.4-21]
Length = 250
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 91/249 (36%), Positives = 135/249 (54%), Gaps = 2/249 (0%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS
Sbjct: 63 QAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSD 122
Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI ++ + + +L R + + LK+A+S D MA S ITG ++
Sbjct: 123 AGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDAR 182
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+ V +RA+S A+L TV+ADDP L R + E + + + +
Sbjct: 183 SDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPE-NLKTEYKKEDLRQPVRVILDSQH 241
Query: 241 LLAPVIIVT 249
+ P +
Sbjct: 242 RIQPTHKLF 250
>gi|83593160|ref|YP_426912.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rhodospirillum rubrum ATCC 11170]
gi|83576074|gb|ABC22625.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rhodospirillum rubrum ATCC 11170]
Length = 367
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 134/365 (36%), Positives = 193/365 (52%), Gaps = 13/365 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL + +G NP+V C++V G V+GRG T GG PHAE +AL+ AG ARG
Sbjct: 1 MRTALGLAARGLGRVWPNPAVGCVLVDAQGRVVGRGWTQPGGRPHAEREALDRAGAAARG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATAYVTLEPCSH+G++PPCA +I+ G+ RVV + DPD RVSGRG L G++V+
Sbjct: 61 ATAYVTLEPCSHHGKTPPCADALIDAGVVRVVAALGDPDPRVSGRGFAQLRAAGVVVETG 120
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ E + +L ++ R +TLK A + D I AG S ITG ++ HLLRA
Sbjct: 121 LLVDEARALNLGFLLHRLRGRPLVTLKAATTLDGRIATAGGDSQWITGPQARRYGHLLRA 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
DAI +G+GT LADDP L+CRL GL++ SP+R++ D L L ++++A P+ I+
Sbjct: 181 DHDAIAIGLGTALADDPLLSCRLAGLEDRSPLRVVFDSALALPLGGALVRSADRLPLWII 240
Query: 249 TENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
T + + L+ L G+GVT LLVEGG +A +F
Sbjct: 241 TTAAATAARRQALVERGAEILEVEADPRGRPTIAGALSALAGQGVTRLLVEGGGHLAAAF 300
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG-K 357
+ + LVD + +R+ +IG G+ + ++ F G D Y +
Sbjct: 301 LAADLVDRLAWFRAARLIGGDGLAAVAALGIDRLADSVQFSLEACQTLGDDRLELYARSR 360
Query: 358 NLCLQ 362
+
Sbjct: 361 DPLSP 365
>gi|148909999|gb|ABR18084.1| unknown [Picea sitchensis]
Length = 457
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 100/381 (26%), Positives = 165/381 (43%), Gaps = 36/381 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP DA++M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL
Sbjct: 88 MP---EDAQYMRMCISLAKKALGCTSPNPMVGCVIVKDGHIVGQGFHPKAGEPHAEVFAL 144
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG +A GATAYV+LEPC+HYGR+PPC Q +I+ + RVVV + DP+ V+ +G+ L
Sbjct: 145 REAGTKAEGATAYVSLEPCNHYGRTPPCTQALIQARVGRVVVGMVDPNPIVASKGVATLR 204
Query: 121 QKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI V +E + + AY+ R + + IT++ ++S D +
Sbjct: 205 NSGIDVTVGVEEKLCQTMNEAYIHRILTGKPFITMRFSMSLDGGMLDDLGD----GAAEE 260
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ Q D ++V T+ + L + P+RI++ L +DS I T
Sbjct: 261 GGYYSKMLQQYDGVIVSDQTLYDN---LNLLSSEAGAKQPLRIVVTRTLVLPIDSLIFNT 317
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK------------LLTILVGRGV 287
L +++ E + K N + R +L I RG+
Sbjct: 318 DLAPTLVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRGL 377
Query: 288 TSLLVEGGA--------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
S+ ++ + + V +++ ++ G + + N
Sbjct: 378 CSVFIDSRGLASAGLENFIGKQALEEEAVQKLVIAICPMISGNKRTELNFDIPPAKLN-- 435
Query: 340 CVRRDYFGSDVCLE--YIGKN 358
R DV + Y ++
Sbjct: 436 -RLRTKLSKDVAVVEGYFPRD 455
>gi|308231834|ref|ZP_07663946.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu001]
gi|308369792|ref|ZP_07419077.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu002]
gi|308370712|ref|ZP_07666996.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu003]
gi|308371959|ref|ZP_07667277.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu004]
gi|308373132|ref|ZP_07667517.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu005]
gi|308374304|ref|ZP_07667756.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu006]
gi|308375454|ref|ZP_07668025.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu007]
gi|308376713|ref|ZP_07668330.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu008]
gi|308377721|ref|ZP_07480168.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu009]
gi|308378931|ref|ZP_07668864.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu010]
gi|308380068|ref|ZP_07669113.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu011]
gi|308215903|gb|EFO75302.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu001]
gi|308326399|gb|EFP15250.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu002]
gi|308331085|gb|EFP19936.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu003]
gi|308334898|gb|EFP23749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu004]
gi|308338707|gb|EFP27558.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu005]
gi|308342394|gb|EFP31245.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu006]
gi|308346232|gb|EFP35083.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu007]
gi|308350184|gb|EFP39035.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu008]
gi|308354825|gb|EFP43676.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu009]
gi|308358776|gb|EFP47627.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu010]
gi|308362713|gb|EFP51564.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
SUMu011]
Length = 337
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 156/358 (43%), Gaps = 35/358 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T P V +IV +G ++G G T G HAEV AL A
Sbjct: 6 SIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 64
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 65 GGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 123
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q H+T K A S D A S I+ ++
Sbjct: 124 LQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARL 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTA 240
+H RA +DAILVG GTVLADDP LT RL ++ + +++++
Sbjct: 184 DLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDIPPEARVLNDE 243
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I E + + AL+ R T +L+EGG +A
Sbjct: 244 ARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPTLAG 277
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ + ++ I+ Y + I++G + + + G D+ L +
Sbjct: 278 AFLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 335
>gi|15608547|ref|NP_215925.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Mycobacterium tuberculosis H37Rv]
gi|15840867|ref|NP_335904.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
gi|148661200|ref|YP_001282723.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
gi|148822629|ref|YP_001287383.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis F11]
gi|167968448|ref|ZP_02550725.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis H37Ra]
gi|215403256|ref|ZP_03415437.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis 02_1987]
gi|215411054|ref|ZP_03419862.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis 94_M4241A]
gi|215445596|ref|ZP_03432348.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis T85]
gi|218753118|ref|ZP_03531914.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis GM 1503]
gi|253799541|ref|YP_003032542.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 1435]
gi|254231651|ref|ZP_04924978.1| bifunctional riboflavin biosynthesis protein ribG :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis C]
gi|254364292|ref|ZP_04980338.1| bifunctional riboflavin biosynthesis protein ribG :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis str. Haarlem]
gi|254550423|ref|ZP_05140870.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289554800|ref|ZP_06444010.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 605]
gi|289745160|ref|ZP_06504538.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
gi|289757515|ref|ZP_06516893.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
gi|289761568|ref|ZP_06520946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis GM 1503]
gi|294994971|ref|ZP_06800662.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
210]
gi|297633965|ref|ZP_06951745.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 4207]
gi|297730954|ref|ZP_06960072.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN R506]
gi|298524915|ref|ZP_07012324.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Mycobacterium tuberculosis 94_M4241A]
gi|313658287|ref|ZP_07815167.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN V2475]
gi|2829534|sp|P71677|RIBD_MYCTU RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1542917|emb|CAB02188.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG :
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase) +
5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP
reductase) [Mycobacterium tuberculosis H37Rv]
gi|13881067|gb|AAK45718.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551]
gi|124600710|gb|EAY59720.1| bifunctional riboflavin biosynthesis protein ribG :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis C]
gi|134149806|gb|EBA41851.1| bifunctional riboflavin biosynthesis protein ribG :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis str. Haarlem]
gi|148505352|gb|ABQ73161.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra]
gi|148721156|gb|ABR05781.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis F11]
gi|253321044|gb|ACT25647.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 1435]
gi|289439432|gb|EFD21925.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 605]
gi|289685688|gb|EFD53176.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987]
gi|289709074|gb|EFD73090.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Mycobacterium tuberculosis GM 1503]
gi|289713079|gb|EFD77091.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85]
gi|298494709|gb|EFI30003.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Mycobacterium tuberculosis 94_M4241A]
gi|323720073|gb|EGB29179.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
CDC1551A]
gi|326903030|gb|EGE49963.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
W-148]
gi|328459289|gb|AEB04712.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
KZN 4207]
Length = 339
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 104/358 (29%), Positives = 156/358 (43%), Gaps = 35/358 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T P V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q H+T K A S D A S I+ ++
Sbjct: 126 LQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARL 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTA 240
+H RA +DAILVG GTVLADDP LT RL ++ + +++++
Sbjct: 186 DLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDIPPEARVLNDE 245
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+I E + + AL+ R T +L+EGG +A
Sbjct: 246 ARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPTLAG 279
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ + ++ I+ Y + I++G + + + G D+ L +
Sbjct: 280 AFLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 337
>gi|294900049|ref|XP_002776874.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
50983]
gi|239884075|gb|EER08690.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC
50983]
Length = 332
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 116/309 (37%), Positives = 161/309 (52%), Gaps = 3/309 (0%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAYGGCPHAEVQALEEAGE 65
D FM AL S T NP V C++V+ G V+ G+G G PHAEV AL + +
Sbjct: 11 DEDFMRMALVESEEGRMTTPPNPWVGCILVQHGQVVVGKGHHVRKGGPHAEVNALRDMIQ 70
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
TAYVTLEPCSHYG +PPC + +IE G+ RVVV V+DPD +VSGRG+Q + + G+
Sbjct: 71 SGSTLTAYVTLEPCSHYGSTPPCCEALIEVGVGRVVVGVEDPDPKVSGRGIQRMREAGVD 130
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V E + L AYL ++ + K A S + M+ S ITG ++ H
Sbjct: 131 VKTGCLTGEIRESLRAYLKQRAMGLPLVVGKAAASLNGMVCCENGSSQWITGREAREDSH 190
Query: 185 LLRAQ-SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
S AI+VG+GTVLADD LT R E P+R++LDP ++ +KI+ T
Sbjct: 191 RTLRALSQAIVVGVGTVLADDCSLTVRGVEGLEKQPLRVVLDPSARILRTAKILNTEEAP 250
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+++V D + + DL +L L RGV +LVEGGA FI
Sbjct: 251 TLVVVGRGADRSGLEKVEILEVELDQNGELDLGGVLRHLADRGVFQVLVEGGAKTLTKFI 310
Query: 304 NSRLVDSII 312
++VD ++
Sbjct: 311 EKKMVDELV 319
>gi|289675578|ref|ZP_06496468.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
syringae FF5]
Length = 194
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
V + ESE + +L R ++ +K+A+S D MA S ITG
Sbjct: 127 SVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPE 181
>gi|28493654|ref|NP_787815.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
whipplei str. Twist]
gi|28476696|gb|AAO44784.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Tropheryma
whipplei str. Twist]
Length = 371
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 88/359 (24%), Positives = 144/359 (40%), Gaps = 21/359 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ ++ NP V C+I+ +D +I +G G HAE+ AL A
Sbjct: 16 MHRAITIAQHGPVF-DRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74
Query: 70 -ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
TA +TLEPCS G++ PC + +++ G++ VV V DP G + LS+ G+ +
Sbjct: 75 PYTAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDP----ESSGAKVLSEAGVKITY 130
Query: 129 MMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L A +V K + K A D + S ITG ++ H++R
Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+Q DAI +G T+ D+P L ++ ++ + +
Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRP----------RRSNTAG 240
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + +DLKK + L GV SLL+EGG + SF+ L
Sbjct: 241 RGSCELGRCVRGHEVFARDPTILSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDL 300
Query: 308 VDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNLCLQE 363
VD +Y + ++G G I +E F FG ++ + I C +
Sbjct: 301 VDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQCNPD 359
>gi|317124749|ref|YP_004098861.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Intrasporangium calvum DSM 43043]
gi|315588837|gb|ADU48134.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Intrasporangium calvum DSM 43043]
Length = 378
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 109/361 (30%), Positives = 163/361 (45%), Gaps = 12/361 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60
P S DA M A+ + NP V C+IV + G V+ G G PHAE AL
Sbjct: 8 PQSPVDAARMLRAIALAERS-PWPDPNPRVGCVIVDRAGEVVAEGWHRGAGTPHAEAAAL 66
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AGE ARG TAYV+LEPC+H GR+ PC+ ++E G+ RVV DP+ SG +
Sbjct: 67 ALAGERARGGTAYVSLEPCAHRGRTGPCSDALVEAGVARVVYAQADPNAEASGGADVLRA 126
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
IV ++ E ++ R +T K A + D A S ITG ++
Sbjct: 127 AGVQIVGGLLADEAAALNDRWVRTITLGRPLVTWKFAATLDGRSAAADGSSQWITGPAAR 186
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
VH LRA DAI+ G GTVLADDP LT R + + + R + + + +
Sbjct: 187 ADVHALRATRDAIVAGTGTVLADDPRLTVRPDTVVAPTDRRTGPEVAPGAAAAPGPVGSQ 246
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
L V+ + A +++ RD+ +L L RGV + +EGG +A
Sbjct: 247 PLRVVVGLRAVPPSARVHA---GPGEVLHLRTRDVHAVLAALWSRGVREVWLEGGPTLAA 303
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
+F + LVD + Y + ++G G P+ + + + + G+DV + +
Sbjct: 304 AFWAADLVDDVYAYLAPALLGAG--PAAVGDLGIRSIDGIRRLEITDVSQVGADVRVHAV 361
Query: 356 G 356
Sbjct: 362 P 362
>gi|148261112|ref|YP_001235239.1| riboflavin biosynthesis protein RibD [Acidiphilium cryptum JF-5]
gi|146402793|gb|ABQ31320.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium
cryptum JF-5]
Length = 363
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 139/362 (38%), Positives = 197/362 (54%), Gaps = 10/362 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+
Sbjct: 2 DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124
ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G
Sbjct: 62 AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+V+ + +E + R E R +TLK+A S D I S ITG ++ H
Sbjct: 122 VVEGIGGAEAAEINAGFCKRIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P
Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241
Query: 245 VIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ IV + A + DL L ++ G+T +L EGG +A
Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAVVGAAGLTRVLAEGGGTLA 301
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ I + LVD + + + +VIG+ GI + +EE F + G D+ Y
Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361
Query: 356 GK 357
Sbjct: 362 RD 363
>gi|33866124|ref|NP_897683.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. WH 8102]
gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Synechococcus sp. WH 8102]
Length = 354
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 112/353 (31%), Positives = 170/353 (48%), Gaps = 13/353 (3%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M AL + G TS NP V +++ ++G ++G G A G PHAEV AL +AG A
Sbjct: 5 WMRRALALAALAEGRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAA 64
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G T VTLEPC H+GR+PPC++ +++ G+ RVVV ++DPD RV+G G+ L + G++V
Sbjct: 65 GGTLIVTLEPCCHHGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAGVVVIT 124
Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E A+L R R LK A+ D + S I+G S+ VH LR
Sbjct: 125 GVLRQEAAEQNRAFLHRVRTGRPWGVLKWAMGLDGRTALPNGTSQWISGADSRRWVHQLR 184
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A DA++VG GTV ADDP LT R G ++ P+R++L L ++++ TA A ++
Sbjct: 185 AGCDAVIVGGGTVRADDPLLTSR--GRRDPEPLRVVLSRGLDLPAEAQLWDTASAATLV- 241
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
P A + + + L+ L RG +L E G+ +A + I
Sbjct: 242 ---AHGPEAAGKQAPNGPERLELEQCEPLPLMQHLAARGCNQVLWECGSELAAAAIRQGC 298
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-----MCVRRDYFGSDVCLEYI 355
V + + ++G +PL E + G D L
Sbjct: 299 VQEVAAVLAPKLMGGVAARTPLGELGFTAMDQVLCGQLLPPRPIGDDWLLSLR 351
>gi|300858536|ref|YP_003783519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium pseudotuberculosis FRC41]
gi|300685990|gb|ADK28912.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium pseudotuberculosis FRC41]
gi|302206248|gb|ADL10590.1| Riboflavin biosynthesis protein ribD [Corynebacterium
pseudotuberculosis C231]
gi|302330806|gb|ADL21000.1| Riboflavin biosynthesis protein ribD [Corynebacterium
pseudotuberculosis 1002]
gi|308276490|gb|ADO26389.1| Riboflavin biosynthesis protein ribD [Corynebacterium
pseudotuberculosis I19]
Length = 373
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 103/349 (29%), Positives = 146/349 (41%), Gaps = 34/349 (9%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A+ G TS NP V IV G ++G G T G PHAEV AL+ AG ARGAT
Sbjct: 54 EAVAQGELAQGSTSPNPPVGAAIVSAQGDIVGVGYTQPVGGPHAEVMALQSAGGAARGAT 113
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
VTLEPC H GR+ PC Q +++ GI VV C+ DP R G G ++L + G+ V +
Sbjct: 114 IVVTLEPCQHQGRTGPCTQALLDAGIAEVVYCLKDP-GRKEGGGHEFLQKNGVRVTFLDV 172
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
L +L Q +R ++ K A + D I S IT ++++ R D
Sbjct: 173 PVRA--LRPWLQAQKLQRPYVVGKSAHTVDGFIAAVDGTSQWITSEVARSYAISQRKLFD 230
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
AI+VG GT LAD+P LT R +E ++ + S+
Sbjct: 231 AIVVGTGTALADNPRLTARGPKGEE------TPWQPLRVVIGSR---------------- 268
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
AL + DL L L +G +L+EGGA + S ++D
Sbjct: 269 -----ALPENAHLSDPTVVKFLDLVVALRYLWDKGCRYVLLEGGAGLITSAFERDIIDEF 323
Query: 312 ILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
Y + + +G G S + R + G DV +
Sbjct: 324 HDYSAPLFLGSGKNALDHSISSTLSTAVHMHTQRVELLGEDVLRILVRD 372
>gi|258647712|ref|ZP_05735181.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
51259]
gi|260852547|gb|EEX72416.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC
51259]
Length = 322
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 102/346 (29%), Positives = 142/346 (41%), Gaps = 48/346 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + +M LR + NP V +IV +IG G A G HAEV A+
Sbjct: 1 MEIKDI---YMHRCLRLAENGRLSAPPNPMVGAVIVYKDRIIGEGYHAKCGQAHAEVNAI 57
Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+ + +T YV+LEPC+HYGR+PPCA+ I+ GI RVVV +DP +V GRG+
Sbjct: 58 ASVRPDDRPHLQDSTLYVSLEPCAHYGRTPPCARLILNTGIPRVVVGCEDPFDKVEGRGI 117
Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGS 171
L G+ V + E E + + T + R +ITLK A S D +
Sbjct: 118 TMLRDGGVQVTVGVLEQECRELNRHFFTFHTKHRPYITLKWASSADGFVDSWREDEAAAP 177
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
V ++ S VH LRA AILVG GT+ AD P+L R + + +L
Sbjct: 178 VKLSNAHSLMDVHRLRAYHQAILVGHGTLKADRPQLNVRDWVGSNPQRLVLGHVGEDELP 237
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
LL L +G+ SLL
Sbjct: 238 AGFTAYADVAT-----------------------------------LLQSLTEQGIQSLL 262
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
VEGG +FI L D I S + +G G+P+P + +
Sbjct: 263 VEGGPQTQRAFIERGLWDEAIEELSPLTLGS-GVPAPRLPVGIPRK 307
>gi|323343508|ref|ZP_08083735.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
gi|323095327|gb|EFZ37901.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269]
Length = 321
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 96/360 (26%), Positives = 152/360 (42%), Gaps = 58/360 (16%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D R+M ++ + + NP V L+ +G +IG G G HAEV
Sbjct: 14 TEEDIRYMRRCIQLALNGMQNAKPNPMVGALLACEGRIIGEGYHIRFGEGHAEVNCFASV 73
Query: 64 G----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+T YV+LEPCSHYG++PPCA II G+RRVVV DP +V GRG+ L
Sbjct: 74 KPADEHLLPQSTLYVSLEPCSHYGKTPPCADLIIRNGVRRVVVGCIDPFAQVHGRGIHKL 133
Query: 120 SQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI V + E E ++T R +I LK A + + I ++ I+
Sbjct: 134 REAGIEVVVGVLERECLALNKRFITYNTRLRPYIILKWAQTSNGFIDD-CFHALSISTPF 192
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+K H LR +SDAILVG T + P L R ++ + +
Sbjct: 193 TKMLSHKLRVESDAILVGRVTDEREHPMLNVRHWSGRDPLRIVL---------------- 236
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+++ L+T L + V SL+VEGGA
Sbjct: 237 -------------------------------DHRQNIADLMTSLYEKKVQSLIVEGGAKT 265
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
SF+ + L D I + + + + +GG P+P + + +R+D + ++ ++
Sbjct: 266 LQSFLTAGLWDEIRVETAPLTV-KGGTPAP----RIPTDIRLIRQDIYDGNIISVFVKDE 320
>gi|145224309|ref|YP_001134987.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
gi|315444641|ref|YP_004077520.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
gi|145216795|gb|ABP46199.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK]
gi|315262944|gb|ADT99685.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1]
Length = 333
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 106/352 (30%), Positives = 154/352 (43%), Gaps = 30/352 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+AA+ S G T NP V +I+ DG + G G TA G PHAEV AL AGE A G
Sbjct: 7 MAAAIVQSERVKGRTYPNPPVGAVILDSDGEIAGVGATAPTGGPHAEVVALRRAGERAAG 66
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII-VDR 128
TA VTLEPC+H+GR+PPC +I+ G+ V V DP+ +G + + +
Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALIDAGVAAVAFAVADPNPAAAGGAARLAAAGVRVSAGV 126
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ ++ L +L +Q + H+T K A S D A S IT S+ VH RA
Sbjct: 127 VADAVTGGPLREWLHKQRTGKPHVTWKFAASVDGRSAAADGTSQWITSEASRADVHRRRA 186
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+DAI+ G GTV ADDP LT +L S P+ +V
Sbjct: 187 AADAIVAGTGTVFADDPALTA-------------------RLPDGSLADHQ----PLRVV 223
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + + RD +++ L R T +LVEGG +A +F+ + +
Sbjct: 224 VGMREISPDATVLNDDSRTMVIRTRDPHEVIQALTDR--TDVLVEGGPTLAGAFLRAGAI 281
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
D I+ Y + I++G + + G DV L +
Sbjct: 282 DRILAYVAPILLGGPVTAVDDVGVSSITQAHRWRFDGMQAIGPDVLLSLVPN 333
>gi|229493689|ref|ZP_04387474.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
SK121]
gi|229319650|gb|EEN85486.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis
SK121]
Length = 350
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 112/345 (32%), Positives = 158/345 (45%), Gaps = 34/345 (9%)
Query: 21 HVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
G TS NP V +I+ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEPC
Sbjct: 26 ARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPC 85
Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIF 137
+H GR+ PC+Q +I+ G+ VV V DP+ + G L + GI V
Sbjct: 86 NHQGRTGPCSQALIDAGVSAVVYAVGDPNP-EASGGAATLMRAGISVTAGLRAPEVEAGP 144
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
L A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG
Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204
Query: 198 GTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
GTV ADDP LT R + ++ ++ + I+ V+ D+ V
Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKREIPSTASILDDTAPTLVLNTDNVDEVVE 264
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
AL T +L+EGG +A +F+ + VD I Y +
Sbjct: 265 ALG--------------------------EYTDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298
Query: 317 QIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I++G G + + + F G D+ L + ++
Sbjct: 299 PILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343
>gi|226306507|ref|YP_002766467.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
erythropolis PR4]
gi|226185624|dbj|BAH33728.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus
erythropolis PR4]
Length = 350
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 111/345 (32%), Positives = 158/345 (45%), Gaps = 34/345 (9%)
Query: 21 HVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
G TS NP V +I+ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEPC
Sbjct: 26 ARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPC 85
Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIF 137
+H GR+ PC+Q +I+ G+ VV V DP+ + G L + GI V
Sbjct: 86 NHQGRTGPCSQALIDAGVSAVVYAVGDPNP-EASGGAATLMRAGISVTAGLRAPEVEAGP 144
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
L A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG
Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204
Query: 198 GTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
GTV ADDP LT R + ++ ++ + ++ V+ D+ V
Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKREIPSTASVLDDTAPTLVLNTDNIDEVVE 264
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
AL T +L+EGG +A +F+ + VD I Y +
Sbjct: 265 ALG--------------------------EYTDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298
Query: 317 QIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I++G G + + + F G D+ L + ++
Sbjct: 299 PILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343
>gi|270157224|ref|ZP_06185881.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
D-4968]
gi|289164378|ref|YP_003454516.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
NSW150]
gi|269989249|gb|EEZ95503.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
D-4968]
gi|288857551|emb|CBJ11389.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae
NSW150]
Length = 357
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 6/347 (1%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL +R G + NP V + V++G +I + G PHAE L +
Sbjct: 1 MHKKFLLAALEQARLGQGHCAPNPCVGAVAVQNGTIIAQAHHRGAGTPHAEQLLLTQIPP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKGI 124
+ G Y++LEPC+H+GR+PPC II G+ VV DP+ V + L +GI
Sbjct: 61 KTPGICLYISLEPCNHWGRTPPCVDAIINHGVEEVVFGYLDPNPIVAQNNSSEKLRSRGI 120
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V +E F +Y + ++ IT+KIA + + IG A V ++ + + H
Sbjct: 121 KVTHYPVAEITEFYKSYTYWTLTQKPRITVKIAQTLNGKIGQAEGERVILSNALCEQFTH 180
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+RA +D +L TV D+P + RLN ++ + I+D L+ +++I TA
Sbjct: 181 QMRAAADVVLTTAKTVQLDNPRMNVRLNNEEQKKTI-AIIDRQLVLNQEARIFSTAAHCH 239
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ E F D L ++ L G + VE G A+ +
Sbjct: 240 IFHCNEQKIFYPNSTFHPVPEKNGVMD---LNVVIKHLGALGYHDVWVEAGGALFSALHR 296
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
LV LY + I + + G V ++
Sbjct: 297 EGLVHRTYLYIVPTSLDHSAISAYQQSGVFS-RAHTVSWHAMEDNMI 342
>gi|311742370|ref|ZP_07716179.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
15272]
gi|311313998|gb|EFQ83906.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
15272]
Length = 344
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 109/358 (30%), Positives = 162/358 (45%), Gaps = 30/358 (8%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
S + R M AL +R G NP+V C+++ G I G T G HAEV+AL
Sbjct: 3 SEHEIRAMRRALDLARD-RGSCLPNPTVGCVLLDVHGEEISAG-TTVPGGAHAEVEALTA 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE ARGATA VTLEPC+H+G + PC + ++ G+ RVVV DP+ V+ G++ L +
Sbjct: 61 AGERARGATAVVTLEPCAHHGNTGPCVEALVGAGVARVVVAETDPNP-VAAGGVEALRRA 119
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ V+ + E + A+ R +T K A + D + S ITG ++
Sbjct: 120 GLEVETGILGDEVEPLNRAWRFAVTRGRPFVTWKYAATLDGLSAAPDGSSQWITGPEARR 179
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTA 240
V + RAQ DAI+ G G VLADDP LT R + R L + ++ S
Sbjct: 180 DVQVFRAQCDAIVAGTGAVLADDPRLTVRGTDDLPVARERQPLRVVVGETTIPSYYRVFD 239
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+AP + V D +L+ LV R + + +EGG +A
Sbjct: 240 RVAPTLQVPSRDPA----------------------AVLSTLVERDIRHVWLEGGPRLAG 277
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356
+F N+ L+D +I Y + ++G G E L + G D+ +
Sbjct: 278 AFWNAGLIDRVIGYIAPSMLGSGRAALEGEATTLADLRPIDITDLTRIGPDIRIIGTP 335
>gi|317508958|ref|ZP_07966591.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
BAA-974]
gi|316252723|gb|EFV12160.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC
BAA-974]
Length = 363
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 104/337 (30%), Positives = 148/337 (43%), Gaps = 32/337 (9%)
Query: 27 TNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
P V ++V G ++GRGVT G HAEV A+ EAGE ARGATAYVTLEPC H GR+
Sbjct: 43 PEPPVGAVLVSPGGQIVGRGVTQPPGQAHAEVMAIAEAGERARGATAYVTLEPCDHVGRT 102
Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM--ESEGKIFLHAYLT 143
PC++ +I GI VV V DP+ R SG G + L G+ V + + K L +L
Sbjct: 103 GPCSRALIAAGIAEVVYAVPDPNPRSSG-GARTLEAAGVRVRSGVLADEVRKGPLREWLH 161
Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
Q R H+T K A + D S ITG + VH R + DAI+VG GT LAD
Sbjct: 162 VQRTGRPHVTWKFAATLDGRAAAKDGTSQWITGPQIRESVHATRGELDAIIVGTGTALAD 221
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
DP LT RL + + ++ + V+ T + LA+ K
Sbjct: 222 DPWLTARLPDGSLAPHQPTRVVMGTRELPEAARVLDDAAPTVLAKTHDPAEALAMLGDKV 281
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+L+EGG +A +F+ + LVD + + + ++G G
Sbjct: 282 -------------------------HVLLEGGPKLAAAFLKAGLVDLVHAHLAPALLGAG 316
Query: 324 GIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ + F G D+ + +
Sbjct: 317 PLAVGDLGVGTLADALRFSVEDVRQVGGDIAVRLVPD 353
>gi|331697233|ref|YP_004333472.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
CB1190]
gi|326951922|gb|AEA25619.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans
CB1190]
Length = 385
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 106/345 (30%), Positives = 153/345 (44%), Gaps = 32/345 (9%)
Query: 18 SRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76
S G TS NP V C+++ +DG V G G TA G PHAEV AL EAGE ARG TA VTL
Sbjct: 32 SARVHGTTSPNPPVGCVVLDRDGRVAGTGATAPPGGPHAEVAALAEAGERARGGTAVVTL 91
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM--ESEG 134
EPC+H+GR+PPC + GI V V DP+ V+ G L G+ V
Sbjct: 92 EPCAHHGRTPPCTDALRAAGIVAVHAGVADPNP-VAAGGAAVLRAAGVDVTVGTLGAEVA 150
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
L +L R H+T K A + D A S ITG ++ +VH LRA SDA++
Sbjct: 151 AGPLRGWLHATRTGRPHVTWKFAATLDGRSAAADGSSRWITGPAARARVHALRATSDAVV 210
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VG GT LADDP LT R + + +
Sbjct: 211 VGTGTALADDPALTARDAAGTPVPRQPLRVLVGLRHP----------------------- 247
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
++++ D ++L L RGV +L+EGG +A +F+ + VD ++ +
Sbjct: 248 --RPGSHLDAPDVLHLRTHDPDEVLAALHARGVVDVLLEGGPRLAGAFLAAGRVDRVLAH 305
Query: 315 RSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ ++G G + + + G D+ ++ +
Sbjct: 306 LAPALLGAGPAALADAGVGTIADILRLQVASVELVGGDLVVDAVP 350
>gi|84496639|ref|ZP_00995493.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
gi|84383407|gb|EAP99288.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649]
Length = 341
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 101/362 (27%), Positives = 154/362 (42%), Gaps = 30/362 (8%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62
S+ D ++M AL + + NP V C++V DG ++ G G PHAE AL
Sbjct: 5 STTDEQWMLRALVVGAFG-PESDANPRVGCVLVDPDGALVAEGWHQGAGTPHAEAAALAA 63
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE A+G TAYVTLEPC+H GR+ PC+ + G+ RVV V DP+ + G WL+++
Sbjct: 64 AGERAKGCTAYVTLEPCNHTGRTEPCSHALAAAGVSRVVYAVSDPNA-SAAGGAAWLAER 122
Query: 123 GIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
G+ + + L+ R R +T K+A + D A S ITG S+
Sbjct: 123 GVATEGGLLEAEATALNRSWLHRIRTGRPWVTWKLAATLDGRSAAADGTSQWITGPESRQ 182
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH RA+ AI+VG GT L DDP LT R H + + + +
Sbjct: 183 DVHEQRARCGAIIVGTGTALTDDPRLTARRADGTLHDHQPLRVIMGLRDLAPDARVFDDS 242
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V + R ++++ L R + + +EGG VA +
Sbjct: 243 AQTV-----------------------HLRTRQPREVVAYLAEREIHHVWLEGGPTVAAA 279
Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
F+ LVD I+ Y + +++G G + G D+ + I +
Sbjct: 280 FMADGLVDEIVAYIAPVLLGRGRQSVSDLGITTIADALRLEPTDTRIIGHDIRITTILEE 339
Query: 359 LC 360
Sbjct: 340 SR 341
>gi|149276501|ref|ZP_01882645.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
[Pedobacter sp. BAL39]
gi|149233021|gb|EDM38396.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase; 5-amino-6-(5-phosphoribosylamino)uracil
[Pedobacter sp. BAL39]
Length = 332
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 149/346 (43%), Gaps = 23/346 (6%)
Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------GEEARGATAY 73
+G S NP V C+IV +G +IG G G HAEV A+ ATAY
Sbjct: 1 MGNVSPNPMVGCVIVSEGKIIGEGYHEQFGAAHAEVNAINSVWSAYPDQAAALLAQATAY 60
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
V+LEPC+H+G++PPCA +I+ +++VV+ DP V+G+G+ L+ GI V + E
Sbjct: 61 VSLEPCAHFGKTPPCADLLIKNQLQKVVIGNRDPFPDVNGKGIAKLNAAGIEVISGILEE 120
Query: 134 GKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
+ TR ++R I LK A + + I+ +SK VH R + DA
Sbjct: 121 ECTALNIRFFTRISQQRPFIILKWANTANGYFAPKTDIPQWISSPLSKRLVHKWRTEEDA 180
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
LVG T + D+P+L+ R +P+RI++D ++ D + A + +
Sbjct: 181 TLVGKRTAIIDNPQLSARDWP--GKNPVRILIDRRLEVPADRHLYDAAAKTIIFNEVKTA 238
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
I + +K+ L + S++++GG + + FI L D
Sbjct: 239 VD-----GHIHYIQMEDMQYYLPQKIAFQLYLMDIQSVIIDGGVNIINQFIAGGLWDEAR 293
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
++ S P E N + G+D Y +
Sbjct: 294 VFTS-------AHSWPDGIRSPEINGIITSVQTIGADTLTIYKNER 332
>gi|28572847|ref|NP_789627.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
gi|28410980|emb|CAD67365.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27]
Length = 371
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 87/359 (24%), Positives = 143/359 (39%), Gaps = 21/359 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ ++ NP V C+I+ +D +I +G G HAE+ AL A
Sbjct: 16 MHRAITIAQHGPVF-DRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74
Query: 70 -ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
A +TLEPCS G++ PC + +++ G++ VV V DP G + LS+ G+ +
Sbjct: 75 PYAAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDP----ESSGAKVLSEAGVKITY 130
Query: 129 MMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L A +V K + K A D + S ITG ++ H++R
Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+Q DAI +G T+ D+P L ++ ++ + +
Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRP----------RRSNTAG 240
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ + +DLKK + L GV SLL+EGG + SF+ L
Sbjct: 241 RGSCELGRCVRGHEFFARDPTILSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDL 300
Query: 308 VDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNLCLQE 363
VD +Y + ++G G I +E F FG ++ + I C +
Sbjct: 301 VDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQCNPD 359
>gi|299143100|ref|ZP_07036209.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
gi|298575428|gb|EFI47325.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
Length = 318
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 89/355 (25%), Positives = 139/355 (39%), Gaps = 44/355 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
+M L+ + NP V +IV +IG G G HAEV A
Sbjct: 3 HEYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPE 62
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q +
Sbjct: 63 DEKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122
Query: 123 GIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E ++T R +I LK A + + I + ++ +++
Sbjct: 123 GIEVVVGVMEAECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQM 181
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH LRA+++AILVG T L D P L R + + + +
Sbjct: 182 LVHQLRAENEAILVGHTTFLTDHPRLDVRQWSGRNPERIVLSPTMAARK----------- 230
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + +++ L SL+VEGG +
Sbjct: 231 ----------------------ERPEGWTVAATIDEVIAHLYAEKKQSLIVEGGRKTLQA 268
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
FI L D I + + I+I G+ +P + + + +Y + +
Sbjct: 269 FIERGLWDEIRVETAPIMI-TEGVAAP----HFPTHAHIEKTEYIDGNQIITLCR 318
>gi|167565784|ref|ZP_02358700.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
EO147]
Length = 357
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 91/314 (28%), Positives = 133/314 (42%), Gaps = 18/314 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR + + T NP V C+I D V+G G G PHAEV AL EAGE ARGA
Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHDEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++
Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
ME+E + + +R R K+ +S D + + T S++ V RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
S +L G + + + T P + +
Sbjct: 181 SSVVLAPHGV-----------PFPAARNGAAPGYVVRSRDFAALDASPATTEGVPTLALH 229
Query: 250 END------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
D + L L L +GV L ++ A+ +
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289
Query: 304 NSRLVDSIILYRSQ 317
L D ++LY
Sbjct: 290 EGDLADELLLYVHP 303
>gi|296117961|ref|ZP_06836544.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
DSM 20306]
gi|295969192|gb|EFG82434.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes
DSM 20306]
Length = 355
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 101/350 (28%), Positives = 142/350 (40%), Gaps = 27/350 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
+ A+ G TS NP V ++V G ++G G T G HAEVQAL EA G
Sbjct: 19 LRTAMSAGWEVRGTTSPNPPVGAVMVSTAGEIVGTGATQPAGGAHAEVQALAEAVGRTDG 78
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA VTLEPC H GR+ PC Q +IE GI+ V DP+ G +
Sbjct: 79 ATAVVTLEPCRHTGRTGPCTQALIEAGIQEVYYLHSDPNPEAGGGAEALREAGVNVTQLS 138
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L +L R H+TLK A + D A S ITG +++ VH RA
Sbjct: 139 APEGMPDALIPWLKSVQLGRPHVTLKFAQTIDGFTAAADGTSQWITGEMARQYVHEDRAH 198
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI++G GT L D+P LT + S+ +
Sbjct: 199 RDAIIIGTGTALTDNPSLTA-------------------RFPDGSQREHQPRRVVIGRRR 239
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D A + L++L G +LVEGGA +A F+N+ LVD
Sbjct: 240 LADVGENASNLNRLGFEQYAKIDEALQEL----YASGARDVLVEGGAGLASGFMNAGLVD 295
Query: 310 SIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +Y++ +++GEG F + G D+ + Y+
Sbjct: 296 WVQVYQAPLLLGEGISVLAHPLTNTLKGAARFSRGQVVALGDDLLINYVR 345
>gi|256824048|ref|YP_003148008.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
20547]
gi|256687441|gb|ACV05243.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM
20547]
Length = 461
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 104/416 (25%), Positives = 161/416 (38%), Gaps = 73/416 (17%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG----- 64
M AL + NP V C+++ +DG +G G G PHAEV AL +AG
Sbjct: 22 MRRALDLAARG-PAVDPNPRVGCVLLDRDGRTLGEGFHQGAGTPHAEVAALLDAGCGPAA 80
Query: 65 -----------------------------------------------EEARGATAYVTLE 77
GATA VTLE
Sbjct: 81 GPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTRAGTPRLPAGATAVVTLE 140
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H GR+ PCA+ +++ I RVV+ DP SG + + +V ++ESE
Sbjct: 141 PCNHTGRTGPCAEALLDAEIARVVIAQSDPTPLASGGAERLRTAGVEVVTGVLESEATAL 200
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
+ R +TLK+A + D + A S ITG ++ VH RA + AI+VG
Sbjct: 201 NRWFTASARLGRPVVTLKLASTLDGRVAAADGTSQWITGGPARLDVHRQRATAGAIVVGT 260
Query: 198 GTVLADDPELTCRLNGLQEHS------------PMRIILDPHFKLSLDSKIIKTALLAPV 245
GT LADDP+LT RL + + P P+
Sbjct: 261 GTALADDPKLTVRLPAAELAAPAVESDPAPEAGPAPSATPSTDAAPAPDATTAPTPRQPL 320
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+V + + I D ++L +L RG+ + +EGG +A +F+ +
Sbjct: 321 RVVVGTRELPASARVFDDAAETISLRTHDPAEVLRVLSDRGIHHVWLEGGPTLAAAFLRA 380
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
LVD ++ Y + ++G G PS + + + + + G D+ L +
Sbjct: 381 GLVDRLVHYLAPALLGAG--PSLIGDLGIGSIDGIDRWHLEDVTHLGDDLRLTLVP 434
>gi|149921258|ref|ZP_01909714.1| riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Plesiocystis pacifica SIR-1]
gi|149817918|gb|EDM77380.1| riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Plesiocystis pacifica SIR-1]
Length = 366
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 116/358 (32%), Positives = 172/358 (48%), Gaps = 12/358 (3%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M ALR ++ G T NP V ++VK G+V+GRG + G PHAEV+AL +AG AR
Sbjct: 10 HWMGHALRLAKSGTGATYPNPCVGAVLVKKGVVVGRGRSDVTGGPHAEVRALRQAGAAAR 69
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GA YVTLEPCSH GR+PPC IIE G+RRV + V+DP V G+G++ L + G+ V+
Sbjct: 70 GAAMYVTLEPCSHRGRTPPCVDAIIEAGVRRVCIGVEDPAPHVGGKGIRKLRRAGLEVEV 129
Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + YL R +TLK+A S D + A S ITG ++ H LR
Sbjct: 130 GVCGDQARSIHAHYLHHVATGRPFVTLKVASSIDGRLATASGDSKWITGAAARKSAHRLR 189
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A I VG TVL D+P L R P+ +I D +++ + + A V++
Sbjct: 190 ALHHGIAVGSETVLRDNPGLDVRHVD--GVDPIPVIFDSRLRVTAAKRAELKLMRAGVLV 247
Query: 248 VTENDDPVLALAFRKKNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ A A + D++ L +L R + SL+VEGG + S
Sbjct: 248 LYTARASKTAQARLARTPVEGVEVPGDAEGRVDIEAALELLGARELRSLMVEGGGKLLGS 307
Query: 302 FINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
F+ + + + +YR+ +++GEG +E G D Y
Sbjct: 308 FVAADAFEELWVYRAPVILGEGRPILAGLAFDEVARAPRLRQHSTRKLGDDQLTVYAR 365
>gi|288929017|ref|ZP_06422863.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
str. F0108]
gi|288330001|gb|EFC68586.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317
str. F0108]
Length = 348
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 148/354 (41%), Gaps = 58/354 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D R+M L+ +R + NP V +IV + +IG G + G HAEV A E
Sbjct: 42 DERYMRRCLQLARCGLLGAKPNPMVGAVIVYNDRIIGEGYHIHCGEGHAEVNAFAAIRPE 101
Query: 67 ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+T YV+LEPCSHYG++PPCA II G+ RVVV DP +V GRG++ L Q
Sbjct: 102 DEPFLPHSTLYVSLEPCSHYGKTPPCADLIIRKGVPRVVVGCVDPFSKVQGRGIEKLRQA 161
Query: 123 GIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
GI V + E ++ Q E+R ++ +K A + + I ++ I+ ++
Sbjct: 162 GIEVVVGVLEKACLALNRRFIVFQREQRPYVIMKWAQTANGFIDDHF-HALAISTPFTQM 220
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
H LRA+ DAILVG T + P L R + + +
Sbjct: 221 LSHKLRAECDAILVGKTTDEREHPALNTRHWWGENPRRLVLHRHQ--------------- 265
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ +LL L V +L+VEGGA V +
Sbjct: 266 --------------------------------PITQLLAQLYQDNVQTLIVEGGAIVHQA 293
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
FI++ D I + + +G + F ++++ + +V E++
Sbjct: 294 FIDANCCDEIHRETAPFTVFDGTR-----TVAIPPKFQLIKQEIYDGNVLEEFV 342
>gi|15827206|ref|NP_301469.1| bifunctional riboflavin-specific deaminase/reductase [Mycobacterium
leprae TN]
gi|221229684|ref|YP_002503100.1| putative bifunctional riboflavin-specific deaminase/reductase
[Mycobacterium leprae Br4923]
gi|13092754|emb|CAC30063.1| putative bifunctional riboflavin-specific deaminase/reductase
[Mycobacterium leprae]
gi|219932791|emb|CAR70648.1| putative bifunctional riboflavin-specific deaminase/reductase
[Mycobacterium leprae Br4923]
Length = 339
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 106/364 (29%), Positives = 161/364 (44%), Gaps = 36/364 (9%)
Query: 1 MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57
M V + D M A+ S G T NP V +IV DG V+G G T G HAEV
Sbjct: 1 MNVQTVDSLDAAMRLAVEQSYLVKGATYPNPPVGAVIVDPDGRVVGVGATEPAGGDHAEV 60
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL AG A GA A VTLEPC+HYG++PPC ++E + +V + DP+ +G G
Sbjct: 61 VALRSAGVTAAGAIAVVTLEPCNHYGKTPPCVNALLEAKVDKVAYAIADPNA-SAGGGAA 119
Query: 118 WLSQKGIIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
L+ G+ V + + L +L +Q H+T K A S D A S ++
Sbjct: 120 RLTAAGVHVQSGVLADLVTAGPLREWLHKQRTGLPHVTWKYASSIDGRSAAADGSSRWLS 179
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDS 234
S+ +H RA +DAI+VG GTVLAD+P LT RL + + + L++
Sbjct: 180 SEASRADLHRRRATADAIVVGTGTVLADNPTLTARLANGALADRQPLRVVVGMREIPLEA 239
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ VI + + + ALA R T +L+EG
Sbjct: 240 NVLNDDSPTMVIRTHDPMEVLKALADR--------------------------TDVLLEG 273
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351
G +A +F+ + ++ I+ Y + I++G + + D GSD+
Sbjct: 274 GPTLAGAFLRAGTINRILAYVAPILLGGPVTAVDDVGVPNIARALRWQFDGIDRAGSDLV 333
Query: 352 LEYI 355
+ +
Sbjct: 334 ISLV 337
>gi|295839977|ref|ZP_06826910.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
gi|295827729|gb|EFG65559.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74]
Length = 364
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 112/350 (32%), Positives = 161/350 (46%), Gaps = 8/350 (2%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
A+ + +G T NP V C+++ G V G G + PHAE+ AL A E +
Sbjct: 11 REAIALAARGLGRTRHNPVVGCVVLDASGEVAGSGWHSGAAVPHAEIHALARAEELSGVD 70
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+ +
Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVYAVADPTDQATG-GAGTLRAAGLDVEHGL 129
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E+E A+LT R H+T K A S D A S IT ++ VH LRA
Sbjct: 130 LEAEAADVNAAWLTSARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DA+LVG GT ADDP L R P+R++LD + + AP +I
Sbjct: 190 CDAVLVGSGTARADDPHLAVRGVPG-APQPLRVVLDTEGTA-VRAGARVLDDAAPTLIAL 247
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+D P A + DL LL L R V +L+EGGA +A SF+ + D
Sbjct: 248 ADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGVLLEGGARLAGSFVAAGCAD 307
Query: 310 SIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++ Y + +++G G + + G D+ + +
Sbjct: 308 RVVGYLAPVLLGAGPAALTGAGITTLTAALRLDVRDSTRLGPDLRITAVP 357
>gi|260910408|ref|ZP_05917080.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
str. F0295]
gi|260635484|gb|EEX53502.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472
str. F0295]
Length = 351
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 58/357 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R+M L+ +R + NP V +IV +IG G + G HAEV A
Sbjct: 48 TTDERYMRRCLQLARCGLLGAKPNPMVGAVIVYRDRIIGEGYHVHCGEGHAEVNAFAAVR 107
Query: 65 EE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E +T YV+LEPCSHYG++PPCA II + RVVV DP +V GRG++ L
Sbjct: 108 PEDESLLPQSTLYVSLEPCSHYGKTPPCADLIIRKEVARVVVGCIDPFAKVQGRGIEKLR 167
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI V + E E ++ Q E+R ++ +K A + + I ++ I+ +
Sbjct: 168 RAGIEVVVGVLEKECLALNRHFIVFQREQRPYVIMKWAQTANGFIDDHY-RALAISTPFT 226
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H LRA+ DAILVG T + P L R + + +
Sbjct: 227 QMLSHKLRAECDAILVGKTTDEREHPALNTRHWWGKSPRRLVLHRQQ------------- 273
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ +LL L V +L+VEGG+ V
Sbjct: 274 ----------------------------------AIAQLLAQLYQDNVQTLIVEGGSTVH 299
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+FIN+ D I + + +G + + F ++++ F +V E++
Sbjct: 300 QAFINANCCDEIHRETAPFTVFDG-----TKAIDIPPKFRLIKQEIFDGNVMEEFVR 351
>gi|117928481|ref|YP_873032.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidothermus cellulolyticus 11B]
gi|117648944|gb|ABK53046.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidothermus cellulolyticus 11B]
Length = 366
Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats.
Identities = 110/344 (31%), Positives = 152/344 (44%), Gaps = 32/344 (9%)
Query: 19 RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77
G TS NP V C+++ G V+G G G PHAEV AL AG ARG T VTLE
Sbjct: 26 ERGRGSTSPNPIVGCVVLDAAGRVVGEGFHLRAGGPHAEVVALAAAGPAARGGTLVVTLE 85
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC H GR+ PC I GIRRVV V DP G + +V ++ +E
Sbjct: 86 PCRHVGRTGPCVAEIRRAGIRRVVYAVADPTAAGGGGAELAAAGL-DVVGGVLAAEAAAA 144
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
A+L R R +T K A + D + A S IT ++ VHLLRAQSDAI++G
Sbjct: 145 NRAWLHRVATGRPFVTWKYAATLDGRVAAADGSSRWITSDEARRDVHLLRAQSDAIVIGT 204
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
GT LADDP LT R++ + + + ++ V
Sbjct: 205 GTALADDPALTVRVDDAAPDLTQPLRVVVGRRDLPPGARLRDDTAPTV------------ 252
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
D +L L RGV S+L+EGG +A +F+ +RLVD I+ Y +
Sbjct: 253 -----------QLRKHDPAAVLARLADRGVLSVLLEGGPTLAAAFLRARLVDRIVAYVAP 301
Query: 318 IVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
I++G G P + + + + + G D+ L
Sbjct: 302 ILLGSG--PPLVADLGIATLAAGQRWRIDEVTRIGPDLRLTLAP 343
>gi|297745271|emb|CBI40351.3| unnamed protein product [Vitis vinifera]
Length = 348
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 16/355 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG+ A A
Sbjct: 1 MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI V +
Sbjct: 61 TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120
Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
E E K AY+ + + + +TL+ ++S + I + L +
Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLG----EGVEEAGGYYSQLVQE 176
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
DAI++ TV + + P+ I++ I T + VII
Sbjct: 177 YDAIILSPTTVTEKFSFPASQ--EPGANQPLHILIAKSPISPNQIPIPHTEATSKVIIFA 234
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA------VAHSFI 303
+N+ V +K I + D +L +L +G+ S+L++ + +
Sbjct: 235 DNETAV-EPEMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLDLRGNFGYFEDLLKQSL 293
Query: 304 NSRLVDSIILYRSQIVI--GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L+ +++ E G+P L+ + V LE
Sbjct: 294 EENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVVLEGYP 348
>gi|261417115|ref|YP_003250798.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373571|gb|ACX76316.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326859|gb|ADL26060.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 421
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 116/413 (28%), Positives = 172/413 (41%), Gaps = 66/413 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
FM AL + + +G + NP+V ++VKDGIV+G+G T G HAEV AL +AGE ARG
Sbjct: 8 FMQFALEQAFFAIGESRPNPAVGAVVVKDGIVVGKGRTQRPGSAHAEVMALRDAGELARG 67
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A+ +VTLEPC HYGR+PPC + IIE GI++V DP+ V G+ + L + G+ V
Sbjct: 68 ASIFVTLEPCCHYGRTPPCTKAIIEAGIQKVYFAHSDPNPVVHGKSRKILEEAGVEVHEG 127
Query: 130 MESEG-------------------------------------------KIFLHAYLTRQV 146
+++ + + AY
Sbjct: 128 VDACILACVEDCSNGESCTECRVFEFTSSLPLDKASREAEGLAVFAEVERYFEAYDYFVS 187
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPIT----GFISKNQVHLLRAQSDAILVGIGTVLA 202
KR+ + +K AVSQD +G + + H LRA SDA+LVG GT+LA
Sbjct: 188 TKRTFVEVKSAVSQDGFMGCVDKAGNHLPLAITKQGANCWNHELRAMSDAVLVGAGTLLA 247
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D+P L R + F S++ + IV L +
Sbjct: 248 DNPGLDVRYAAGNNPVKIVWAGHHEFTADEISRLKIFSASDAKPIVFSCVAQPKLLNVAE 307
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN----------SRLVDSII 312
I + + + ++ L RG+ L+VE GA +A N L + +
Sbjct: 308 CVILLNDSFAENWRAMVDDLSARGMHRLMVEPGAGLARELFNGAAVAQSQNAQPLWNRLD 367
Query: 313 LYRS---------QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L+RS + +I G + + LE L N + G DV Y
Sbjct: 368 LWRSTDSSVDIALENLIESGAVKAGLEYPELPANIVAKESAVIGPDVLTVYYP 420
>gi|167572878|ref|ZP_02365752.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
C6786]
Length = 357
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 90/314 (28%), Positives = 132/314 (42%), Gaps = 18/314 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR + + T NP V C+I V+G G G PHAEV AL EAGE ARGA
Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHGEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++
Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
ME+E + + +R R K+ +S D + + T S++ V RA+
Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
S +L G + + + T P + +
Sbjct: 181 SSVVLAPHGV-----------PFPAARNGAAPGYVVRSRDFAALDASPATTEGVPTLALH 229
Query: 250 END------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
D + L L L +GV L ++ A+ +
Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289
Query: 304 NSRLVDSIILYRSQ 317
L D ++LY
Sbjct: 290 EGNLADELLLYVHP 303
>gi|224025262|ref|ZP_03643628.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
18228]
gi|224018498|gb|EEF76496.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM
18228]
Length = 306
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 98/294 (33%), Positives = 149/294 (50%), Gaps = 10/294 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +++ ++ +R + + NP V ++V +IG G A G HAEV AL +E
Sbjct: 4 DEKYIRRCIQLARNGLCNAAPNPMVGAVVVYRDRIIGEGYHARCGEGHAEVNALRSVRDE 63
Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ AT YV+LEPCSHYG++PPCA I+ GI RVVV DP V+GRG++ L + GI
Sbjct: 64 SLLKEATLYVSLEPCSHYGKTPPCADLIVSKGIPRVVVGCMDPFPLVAGRGIRKLEEAGI 123
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKN 181
V + E E + + ++T + KR +ITLK A S D I ++ ++
Sbjct: 124 DVTVGVLEEECRELIRRFVTLNIRKRPYITLKWAQSADGFIDRLRQEGSPAVLSTPLTSM 183
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
VH +RA+ AILVG T L D+P LT R +P+R+++D L + K+
Sbjct: 184 YVHKMRAEYKAILVGRRTALLDNPSLTTR--NWYGPNPLRLVIDRKLTLPRELKLFDGTA 241
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
V + P L + ++ L +++ +L R + SLLVEGG
Sbjct: 242 PTLVF---TEEVPAECLRQTNVDYQVLDFSQDILPQIMQVLYERKIQSLLVEGG 292
>gi|220912436|ref|YP_002487745.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
A6]
gi|219859314|gb|ACL39656.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus
A6]
Length = 373
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 96/370 (25%), Positives = 145/370 (39%), Gaps = 39/370 (10%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
P + + + M AL + G NP V ++V DG + G G HAE A+
Sbjct: 10 PFTPAEVQAMEHALEAALQ--GPRGANPLVGAVVVSPDGRELATGYHRGAGTAHAEADAV 67
Query: 61 ---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
EAG + G T VTLEPC+H GR+ PC + II GI VV VDDP +G
Sbjct: 68 ARAREAGVDLAGCTMVVTLEPCNHVGRTGPCTEAIIAAGITDVVYAVDDPHDPAAGGAAT 127
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ + + +E + EKR TL IA + D I S I+
Sbjct: 128 LRNAGISVRSGLAAAESLELNRRWFEAVAEKRPFTTLHIAQTLDGRIAAEDGTSQWISSP 187
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S H +R++ DAILVG TV D+P L R + + + + I
Sbjct: 188 ESLADNHGIRSRIDAILVGTQTVAVDNPRLNARDASGNPAARQPVRAVMGLRDIPEHAAI 247
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
V + RD ++ LT L G ++VEGG+
Sbjct: 248 LGDDGLAV-----------------------HLPTRDPREALTTLYASGTRHVMVEGGSR 284
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVR-----RDYFGS 348
+ +F+ + LVD +I+Y + ++G G PS + +++ G
Sbjct: 285 ILSAFLTAGLVDELIVYLAPTLLGS-GTPSLDGLGVSTLPDAQHWEWDASDGGPVRTLGR 343
Query: 349 DVCLEYIGKN 358
D+ L +
Sbjct: 344 DLRLHLKPQR 353
>gi|294635299|ref|ZP_06713797.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
23685]
gi|291091308|gb|EFE23869.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
23685]
Length = 319
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 101/319 (31%), Positives = 142/319 (44%), Gaps = 16/319 (5%)
Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
PHAEV AL AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+
Sbjct: 1 PHAEVHALRMAGERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVA 60
Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGS 171
GRGL L Q GI V + ++ R ++ LK+ S D MA S
Sbjct: 61 GRGLYRLQQAGIEVRHGLMLAEAEAVNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGES 120
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
IT ++ V RAQS AIL TVLADDP LT R + L + R +
Sbjct: 121 QWITSAAARADVQRYRAQSSAILSSSATVLADDPSLTVRWDELDDE-TQRHYPREWLRQP 179
Query: 232 LDSKIIKTALLAP----------VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
L + + P ++ E D + + DL L+
Sbjct: 180 LRVIVDSHNRVTPQHRLISQPGETLLARETPDTQAWPSAVSQLSLPRNGAGLDLVLLMMQ 239
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKN 337
L R + S+ VE G +A + + + +VD +I+Y + ++G+ LE +
Sbjct: 240 LGKRQINSVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAARGLCHLPGLERLGDAPS 299
Query: 338 FMCVRRDYFGSDVCLEYIG 356
G D+ L
Sbjct: 300 LAFSEVTRVGDDLRLTLRV 318
>gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
Length = 257
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 96/237 (40%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++
Sbjct: 2 FSDTDFAHMQRALALAARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARSRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A S D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDD 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD++
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDDPQLTVRGID-TPRQPRRVLVDSRLELPLDAR 237
>gi|326773583|ref|ZP_08232866.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
gi|326636813|gb|EGE37716.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505]
Length = 362
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 143/353 (40%), Gaps = 29/353 (8%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60
++ M ALR + NP V C+I+ DG V+ G G HAEV AL
Sbjct: 3 SFTTVQTAAMQRALRAAASPDTPPGPNPRVGCVILSSDGDVLAEGHHRGAGSAHAEVDAL 62
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
G ARGAT VTLEPC+H GR+ PC Q +++ G+ V+ DDP + G
Sbjct: 63 ANLAATGASARGATVLVTLEPCNHQGRTGPCVQALLDAGVAEVIYAQDDPTEQAGGGAAT 122
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ + + E +L R +T K+A + D I A S IT
Sbjct: 123 LEAGGVRVRRGLCAQEAARLNRPWLLAVTRGRPMVTWKLAATLDGRIAAADGTSQWITPV 182
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+++ H LR Q DAI+VG GT LADDP LT R Q ++ + S+
Sbjct: 183 AARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHL----QPLRVVVGSR-- 236
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ A + + + D + +L L R + +L+EGG
Sbjct: 237 ----------------SLPPTARVLADDHYLLLPDHDPRAVLAALAEREIRHVLLEGGPT 280
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFG 347
+A +F+ + LVD ++ Y + ++G G + G
Sbjct: 281 LATAFLRAGLVDRVVAYTAPALLGAGSAALADFGAATITDALRLRHPHVEVLG 333
>gi|83717489|ref|YP_439477.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
gi|257142602|ref|ZP_05590864.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
gi|83651314|gb|ABC35378.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
Length = 389
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 89/363 (24%), Positives = 141/363 (38%), Gaps = 27/363 (7%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSTFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ +E++ + + +R R +++ D +
Sbjct: 121 ADAGIVVEQGLLEAQARELNIGFFSRIERGRPWTRATLSLPIDGPPAPDSADLAALDAAP 180
Query: 179 SKNQVHLLRAQSDAILV----------------GIGTVLADDPELTCRLNGLQEHSPMRI 222
S+ + L ++ + +V V++ +
Sbjct: 181 SEARDDLRHWRARSSVVLERAPDAGRAVGRDGAAPRYVVSARDCAALGAASVACAPADGA 240
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
+ + + A + D A C L L
Sbjct: 241 PTLALHRDDKGGRACEDACGS----GHRADRADARPAGAPSAPVADTDACLPLPDAFARL 296
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+GV L VE A+ + + L D ++LY +P+ +L V
Sbjct: 297 AKQGVNELFVEADLALCDALFGADLADELLLYAHP-----ASRDAPVSASWLAAAIDDVA 351
Query: 343 RDY 345
R +
Sbjct: 352 RRW 354
>gi|31335381|emb|CAD89884.1| riboflavin biosynthesis protein ribD [Bacillus cereus]
Length = 209
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 83/205 (40%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQXYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122
Query: 127 DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ E + + KR +T+K A+S D S IT ++ VH
Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCR 210
R DAILVG+ TV+AD+P LT R
Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTR 207
>gi|126457369|ref|YP_001075539.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|242313881|ref|ZP_04812898.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
gi|126231137|gb|ABN94550.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|242137120|gb|EES23523.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
Length = 395
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 91/365 (24%), Positives = 139/365 (38%), Gaps = 25/365 (6%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 121 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 180
Query: 179 SKNQVHLLRAQSDAILV------------------GIGTVLADDPELTCRLNGLQEHSPM 220
S+ + L ++ + LV D L +
Sbjct: 181 SEARDDLRHWRARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 240
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ S + + V D A L
Sbjct: 241 PTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASAPDTDAGLPLPDAFA 300
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L +GV LLV+ A+ + S L D ++LY +P+ L
Sbjct: 301 RLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDD 355
Query: 341 VRRDY 345
V R +
Sbjct: 356 VARRW 360
>gi|167906520|ref|ZP_02493725.1| riboflavin biosynthesis protein [Burkholderia pseudomallei NCTC
13177]
Length = 397
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 87/367 (23%), Positives = 139/367 (37%), Gaps = 27/367 (7%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 121 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 180
Query: 179 SKNQVHLLRAQSD----------------AILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
S+ + L ++ V++ +
Sbjct: 181 SEARDDLRHWRARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 240
Query: 223 ILDPHFKLSLDSKIIKT----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+ + + A + ++ D A A L
Sbjct: 241 PTLALHRDDNSASACEDAHGTGHRARRVDRVDHADARPAGAPSASASAPDTDAGLPLPDA 300
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
L +GV LLV+ A+ + S L D ++LY +P+
Sbjct: 301 FARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRFAAAI 355
Query: 339 MCVRRDY 345
V R +
Sbjct: 356 DNVARRW 362
>gi|76819539|ref|YP_335244.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
gi|76584012|gb|ABA53486.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
Length = 454
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 91/365 (24%), Positives = 139/365 (38%), Gaps = 25/365 (6%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 60 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 119
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 120 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 179
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 180 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 239
Query: 179 SKNQVHLLRAQSDAILV------------------GIGTVLADDPELTCRLNGLQEHSPM 220
S+ + L ++ + LV D L +
Sbjct: 240 SEARDDLRHWRARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 299
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ S + + V D A L
Sbjct: 300 PTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPLPDAFA 359
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L +GV LLV+ A+ + S L D ++LY +P+ L
Sbjct: 360 RLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDD 414
Query: 341 VRRDY 345
V R +
Sbjct: 415 VARRW 419
>gi|53722153|ref|YP_111138.1| riboflavin biosynthesis protein [Burkholderia pseudomallei K96243]
gi|134283488|ref|ZP_01770188.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|217418752|ref|ZP_03450259.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
gi|237509799|ref|ZP_04522514.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
gi|254190205|ref|ZP_04896714.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|254263160|ref|ZP_04954025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
gi|52212567|emb|CAH38593.1| putative riboflavin biosynthesis protein [Burkholderia pseudomallei
K96243]
gi|134245237|gb|EBA45331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|157937882|gb|EDO93552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|217398056|gb|EEC38071.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
gi|235002004|gb|EEP51428.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
gi|254214162|gb|EET03547.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
Length = 395
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 91/365 (24%), Positives = 139/365 (38%), Gaps = 25/365 (6%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 121 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 180
Query: 179 SKNQVHLLRAQSDAILV------------------GIGTVLADDPELTCRLNGLQEHSPM 220
S+ + L ++ + LV D L +
Sbjct: 181 SEARDDLRHWRARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 240
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ S + + V D A L
Sbjct: 241 PTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPLPDAFA 300
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L +GV LLV+ A+ + S L D ++LY +P+ L
Sbjct: 301 RLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDD 355
Query: 341 VRRDY 345
V R +
Sbjct: 356 VARRW 360
>gi|124514350|gb|EAY55863.1| riboflavin biosynthesis protein RibD [Leptospirillum rubarum]
Length = 388
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 127/363 (34%), Positives = 183/363 (50%), Gaps = 17/363 (4%)
Query: 7 DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE
Sbjct: 4 DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63
Query: 66 EARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
ARGAT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L + G+
Sbjct: 64 RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELREGGV 123
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + ++ + R +TLK A S D I A S I+G S
Sbjct: 124 SVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR + DAI+VG+GTVL D+P LT R + H P+R+ILD + DS++ +T
Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRVILDSLGRTPPDSRLFETISE 243
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-------DCRDLKKLLTILVGRGVTSLLVEGG 295
+PV I+ P +A + + L LL L+ + +LLVEGG
Sbjct: 244 SPVWIMAGEHAPEDRVARLEDKGARTFRLPAGSDGKGLRLSSLLAALLESRLLTLLVEGG 303
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMC---VRRDYFGSD 349
A V SF+ RLVDSI L + ++IG + ++ F +R G D
Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363
Query: 350 VCL 352
+ +
Sbjct: 364 LLI 366
>gi|170750355|ref|YP_001756615.1| riboflavin biosynthesis protein RibD [Methylobacterium
radiotolerans JCM 2831]
gi|170656877|gb|ACB25932.1| riboflavin biosynthesis protein RibD [Methylobacterium
radiotolerans JCM 2831]
Length = 369
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 139/365 (38%), Positives = 186/365 (50%), Gaps = 13/365 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAG 64
DA FM AL R +G T NPSV ++V+ G ++G TA GG PH E AL AG
Sbjct: 4 DANFMRLALALGRRGLGTTWPNPSVGAVVVEPGTGRILGTAATAQGGRPHGEPVALAAAG 63
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSH+GR+PPC I+ GI RVV ++DPD RV+GRG L + G+
Sbjct: 64 EAARGATLYVTLEPCSHHGRTPPCTDAILAAGIARVVSALEDPDPRVAGRGHDLLRRGGV 123
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + H +V + R + LK+A ++D AG + ITG ++ V
Sbjct: 124 AVETGLMRDEAARDHVGHVTRVTRGRPALHLKLARTRDGFCAAAGPERLRITGPVADGAV 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL RA +DAIL+GIGT ADDP LT RL GL SP+R++LD H +LS S + +TA
Sbjct: 184 HLWRAHADAILIGIGTARADDPSLTVRLPGLGARSPLRVVLDTHLRLSPASVLARTARDT 243
Query: 244 PVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +++T P A + DL LT L RG+T L EGG
Sbjct: 244 PTLVLTTRSAPAHARRALEALGVAVATVPADPAGGIDLPAALTHLGERGLTRLCSEGGPR 303
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353
+A + + L+D+ L + +G G L E F R G D +
Sbjct: 304 LAEALARADLIDACTLVTGPMALGPAGGLRALGPALAEALSGDRFREAERLQLGPDAAVT 363
Query: 354 YIGKN 358
Y
Sbjct: 364 YERNR 368
>gi|206602767|gb|EDZ39248.1| Riboflavin biosynthesis protein RibD [Leptospirillum sp. Group II
'5-way CG']
Length = 388
Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 129/363 (35%), Positives = 182/363 (50%), Gaps = 17/363 (4%)
Query: 7 DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D + FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE
Sbjct: 4 DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63
Query: 66 EARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
ARGAT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L GI
Sbjct: 64 RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELRDGGI 123
Query: 125 IVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + + ++ + R +TLK A S D I A S I+G S
Sbjct: 124 PVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H LR + DAI+VG+GTVL D+P LT R + H P+RIILD + DS++ +T
Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRIILDSLGRTPPDSRLFETLSE 243
Query: 243 APVIIVTENDDPVLAL-------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+PV I+ + P + A + L LL L+ + +LLVEGG
Sbjct: 244 SPVWIMAGENAPEDRIARLEEKGARTFRLPAGPGEKGLRLSSLLAELLENRLLTLLVEGG 303
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMC---VRRDYFGSD 349
A V SF+ RLVDSI L + ++IG + ++ F +R G D
Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363
Query: 350 VCL 352
+ +
Sbjct: 364 LLI 366
>gi|260578782|ref|ZP_05846689.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
43734]
gi|258603080|gb|EEW16350.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC
43734]
Length = 354
Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 110/360 (30%), Positives = 158/360 (43%), Gaps = 42/360 (11%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
A L S NP V +I G V+GRG T G HAEV AL++AGE+ARG A
Sbjct: 9 AHSLGWRAAQLASPNPPVGAVIEDSSGQVVGRGFTQAPGGAHAEVVALQQAGEQARGGRA 68
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-- 130
VTLEPC+H GR+ PCA+ +I GIRRV D + + G L G+ V
Sbjct: 69 IVTLEPCNHTGRTGPCAEALIRAGIRRVDFLFADLNP-AAEGGAATLRAAGVEVHGPYLP 127
Query: 131 -----------ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ +L +R H+ LK+A + D + S ITG +
Sbjct: 128 LPTAGDEAKLPAWSKMYSVEPWLISMARQRPHVCLKMASTLDGRVAAVDGTSQWITGEPA 187
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH R + DAILVG GT+ AD+P LT R Q +
Sbjct: 188 RVAVHEDRTRRDAILVGTGTIAADNPRLTARDAEGQPFAE-------------------- 227
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P+ ++ D + A + ++ RD+ ++L L R V +LLVEGGA +A
Sbjct: 228 -ELQPLRVIMGTSDIPVDAAVFAAPGHALHLPTRDVNEVLAELWKRDVRTLLVEGGAQIA 286
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLE 353
+F+ + +VD + Y + V+G G E L + F+ FG+D+
Sbjct: 287 AAFMEADVVDEVQFYAAPAVLGAGVASLSDSENILGQTIGDIRRFIPRELQVFGNDLRWT 346
>gi|213965573|ref|ZP_03393767.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
SK46]
gi|213951732|gb|EEB63120.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum
SK46]
Length = 350
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 108/356 (30%), Positives = 162/356 (45%), Gaps = 32/356 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
DA+ M+ A+ + G T NP + C+I+ GI +G T G HAE QALE AG
Sbjct: 15 DAQAMALAIEAGQRVRGTTYPNPPIGCVILDTAGIAVGVAGTEPVGGRHAEPQALEMAGP 74
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A+G TA VTLEPC+H GR+PPC + + G+ RV+ V DP+ V+ G +WL KGI
Sbjct: 75 RAQGGTAVVTLEPCNHIGRTPPCTEALAAAGVSRVIFAVADPNP-VAAGGSEWLRYKGIE 133
Query: 126 V--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V + + +L +L Q +R HITLK A + D S ITG ++ +V
Sbjct: 134 VVEEFQRDQVAAGYLRPWLHWQRTRRPHITLKTAGTLDGFAAATDRTSQWITGEQARARV 193
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H RA+ AI+VG GTVLAD+P LT ++ L+
Sbjct: 194 HADRARRQAIVVGTGTVLADNPRLT-------------------------ARTPDGEELS 228
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ +A + N + D++ L + G+ +LVEGG +A +F+
Sbjct: 229 TQPLRIAIGTSEVAADANIRGDNFRHIRTHDVEVALETMADMGLIDVLVEGGPRLASAFL 288
Query: 304 NSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ VD+I Y + +G G + F + G D+ + +
Sbjct: 289 EADAVDAIESYIAPAFLGAGLPVTSANHETTITDISRFRTASVETLGDDILITALR 344
>gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
C6786]
Length = 246
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 91/237 (38%), Positives = 131/237 (55%), Gaps = 5/237 (2%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++
Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGGDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121
Query: 120 SQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + +++R R + +K A S D +A S ITG
Sbjct: 122 RDAGIDVRCGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+++ H RA++ AIL GIGTV DDP+L R P R+++D + L ++
Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVRGVD-TPRQPRRVLIDSRLDIPLSAR 237
>gi|162452084|ref|YP_001614451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sorangium cellulosum 'So ce 56']
gi|161162666|emb|CAN93971.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sorangium cellulosum 'So ce 56']
Length = 381
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 118/363 (32%), Positives = 176/363 (48%), Gaps = 17/363 (4%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
P DA M A+ + + S NP V +++ G V+ A G HAE AL
Sbjct: 8 PDPELDAAMMRLAIEEAHKAMP--SPNPPVGAVVLNAAGEVVAVAHHARAGEEHAEGLAL 65
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG+ ARG T YVTLEPC+H GR+PPC ++ GI+RVVV DP+ V G G Q LS
Sbjct: 66 AAAGDAARGGTLYVTLEPCNHEGRTPPCVDAVLSAGIKRVVVGAPDPNPSVVGGGAQRLS 125
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
G+ VD + +E + + + HI LK+A+S D I S +TG +
Sbjct: 126 DAGLAVDVGVAGAEARALIAPWTKFITTGIPHIALKLALSLDGRIATRTGASKWVTGPEA 185
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKII 237
+ +V LR++ DA+ +GIGT LADDP LT R + SP+R++ D +L L +++
Sbjct: 186 RAKVQELRSRHDAVAIGIGTALADDPRLTLRESALAPGGRSPIRLVFDTRLRLPLHTRLA 245
Query: 238 KTALLAPVIIVTENDDPVLALA------FRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+TA P ++T D P A D+ + + +G+ S+L
Sbjct: 246 QTAREVPTWVLTGADAPEEAEQVLVDAGCVVLRAPTSAEGRVDVTAAMRLCASQGIVSIL 305
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYF 346
VEGGA +A S + SRL D + + + I++G G P + + + R +
Sbjct: 306 VEGGAELAGSLLASRLPDELHAFVAPILLGPRGRPGAVDWAGPDTPGDAPRIVDPRWELC 365
Query: 347 GSD 349
G D
Sbjct: 366 GRD 368
>gi|68536087|ref|YP_250792.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium jeikeium K411]
gi|68263686|emb|CAI37174.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium jeikeium K411]
Length = 354
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 112/362 (30%), Positives = 159/362 (43%), Gaps = 42/362 (11%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
A L S NP V +I G V+GRG T G HAEV ALE+AGE+ARG A
Sbjct: 9 AHSLGWQAAQLASPNPPVGAVIEDPSGQVVGRGFTQAPGGAHAEVVALEQAGEKARGGRA 68
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-- 130
VTLEPC+H GR+ PCA+ +I GIRRV DP+ ++ G L G+ V
Sbjct: 69 IVTLEPCNHTGRTGPCAEALIRAGIRRVDFLFADPNP-IAEGGAATLRAAGVEVHGPYLP 127
Query: 131 -----------ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ +L + ++R H+ LK+A + D + S ITG +
Sbjct: 128 NPTTSPAAKLPAWSQMYSVEPWLISEAQQRPHVCLKMASTLDGRVAAVDGTSQWITGEPA 187
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ VH R + DAILVG GT++AD+P LT R +
Sbjct: 188 RVAVHEDRTRRDAILVGTGTIVADNPRLTARDADGRPFPE-------------------- 227
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L P+ ++ D A ++ RD+ ++L L R V +LLVEGGA VA
Sbjct: 228 -ELQPLRVIMGTSDIPAGAAVFATPGRALHLQTRDVHEVLAELWKRDVRTLLVEGGAQVA 286
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLE 353
+F+ + +VD + Y + V+G G E L + F+ FG D+
Sbjct: 287 AAFVKADVVDEVQYYAAPAVLGAGVASLSDSENNLGQTIGDIRRFVPRELQVFGQDLRWT 346
Query: 354 YI 355
Sbjct: 347 LT 348
>gi|257483265|ref|ZP_05637306.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 167
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 74/161 (45%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AG
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI
Sbjct: 67 ELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGI 126
Query: 125 IVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
V + ESE + +L R + +I +K+A+S D
Sbjct: 127 GVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRT 167
>gi|224067884|ref|XP_002302581.1| predicted protein [Populus trichocarpa]
gi|222844307|gb|EEE81854.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 16/356 (4%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
+M + +R +G TS NP V C+IVKDG ++G G G PHAEV AL +A + A
Sbjct: 29 FYMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAEDLAE 88
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127
ATAYV+LEPC+HYGR+PPC++ +++ +++VV+ + DP+ V+ RG+Q L GI +V
Sbjct: 89 NATAYVSLEPCNHYGRTPPCSEALVKAKVKKVVIGMIDPNPIVASRGVQRLRDAGINVVV 148
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ E K A++ + + +TL+ ++S + + V TG +
Sbjct: 149 GVEEELCKRLNEAFIHKMLTGSPFVTLRYSLSVNGHLVNQLGEGVTDTGGYYSQLLQEYD 208
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A + + + + + IL S + T A +
Sbjct: 209 AVILSASLTGSS--------PFPASQEPGANQPLWILMAGGPSSPIQIPLLTEEAASKVT 260
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV--AHSFIN- 304
+ + + KK I + D +L +L RG+ S+L++ + +
Sbjct: 261 IFTDKEASEEPETSKKGIETVVLDKINLNAILEYCKSRGLCSVLMDLRGSFVELEELLKD 320
Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-YFGSDVCLEYIG 356
L+ I++ G+ S + + D + G
Sbjct: 321 GTEQNLLQKIVVEVLPFWDESSGLSSLTASKSIRRRLKVNNLQPKISGDQSIVLEG 376
>gi|311113483|ref|YP_003984705.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
17931]
gi|310944977|gb|ADP41271.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC
17931]
Length = 415
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 95/365 (26%), Positives = 145/365 (39%), Gaps = 37/365 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL---EE 62
D R MS A+ +R G+ NP V +I G V+ G G PHAE L
Sbjct: 44 DDRAMSLAIEAARQ--GIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADVLAQARA 101
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AG + A YV+LEPC+H G++ PC+ I E GI +V D + SG G ++L
Sbjct: 102 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 160
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV--EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G++ M E + EKR IT+K A + D I A S ITG ++
Sbjct: 161 GVVTTYMREFAEDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 220
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
HL+R ++DA+++G T L D+P L R Q + ++ + I +
Sbjct: 221 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQP------LRVVMGETDIPST 274
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + ++ + + + LL L RGV L++EGG +
Sbjct: 275 YKVCGLGTRDPEN-------------YMQVYTHEPRVLLDELYSRGVRHLMIEGGPGMVG 321
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCV------RRDYFGSDVC 351
F L+D ++ YR+ I++G G G D
Sbjct: 322 LFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMFPSVRVLGEDTA 381
Query: 352 LEYIG 356
I
Sbjct: 382 THLIP 386
>gi|269795119|ref|YP_003314574.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sanguibacter keddieii DSM 10542]
gi|269097304|gb|ACZ21740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sanguibacter keddieii DSM 10542]
Length = 393
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 113/382 (29%), Positives = 161/382 (42%), Gaps = 47/382 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG------------------------- 39
+ D M+ AL +R NP V C+I+
Sbjct: 22 TLDEA-MAHALDLARRGPAH-GPNPQVGCVILAADTADATRTAGTPGATSAGGAEASRPR 79
Query: 40 IVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
V+ G G PHAE AL A G + RGATA VTLEPC+H GR+ PCAQ +++ G
Sbjct: 80 RVLAVGWHRGAGTPHAEADALARASASGVDVRGATAVVTLEPCNHTGRTGPCAQALLDAG 139
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
+ VVV V DP+ SG S + ++ EG+ L +LT R +TLK
Sbjct: 140 VAEVVVSVGDPNPVASGGMGHLRSHGVAVRTGLLADEGEELLRVWLTSVRAGRPFVTLKT 199
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
A S D + A S ITG S+ H +RA DAILVG GT+LADDP LT R +
Sbjct: 200 ATSLDGCVAAADGSSRWITGPQSRAHAHTVRATVDAILVGTGTLLADDPTLTARPPVPEG 259
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + A+ P+ +V R + ++ D+
Sbjct: 260 EVGDGVP--------------EPAVHQPLRVVVGERAVADDARVRGGDGRFVHLATHDVH 305
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---Y 333
++L L V +LVEGG VA +F+ + +VD I Y + +++G+G G
Sbjct: 306 EVLARLAALEVRHVLVEGGPTVATAFVTAGVVDEIHSYVAPVLVGDGRRAVGALGGQSID 365
Query: 334 LEKNFMCVRRDYFGSDVCLEYI 355
+ + G DV L
Sbjct: 366 DAVRWSTSTVERLGEDVLLVAR 387
>gi|254193400|ref|ZP_04899834.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
gi|169650153|gb|EDS82846.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
Length = 398
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 88/368 (23%), Positives = 137/368 (37%), Gaps = 28/368 (7%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 121 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 180
Query: 179 SKNQVHLLRAQSD----------------AILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
S+ + L ++ V++ +
Sbjct: 181 SEARDDLRHWRARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 240
Query: 223 ILDPHFKLSLDSKIIKT-----ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ + + V V D A L
Sbjct: 241 PTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDHADARPAGAPSASAPDTDAGLPLPD 300
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L +GV LLV+ A+ + S L D ++LY +P+ L
Sbjct: 301 AFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAA 355
Query: 338 FMCVRRDY 345
V R +
Sbjct: 356 IDDVARRW 363
>gi|254497578|ref|ZP_05110366.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
LLAP12]
gi|254353194|gb|EET11941.1| riboflavin biosynthesis protein RibD [Legionella drancourtii
LLAP12]
Length = 351
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 7/348 (2%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+F+ AAL +R G + NP V + V++G +I + G PHAE L +
Sbjct: 1 MHKKFLLAALEQARLGQGFCAPNPCVGAVAVQNGNIIAQTCHHGAGTPHAEQLLLAQIPP 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ G + Y++LEPC+H+GR+PPC II + D + + L +G
Sbjct: 61 KTPGVSLYISLEPCNHWGRTPPCVDVIINHGGIEHVIFAYADPNPIVAQNNSTEKLRAQG 120
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I V +E F +Y + K+ +T+KIA + + IG V ++ +
Sbjct: 121 IKVTHYPVAEITEFYKSYTYWTITKKPRVTVKIAQTLNGKIGRKVGERVVLSNSLCGEFT 180
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
H +RA +D IL T+ D+P+L RL ++ P+ I+D L+ +++I TA
Sbjct: 181 HQMRAATDVILTSARTIQLDNPKLNVRLGAKEQAKPV-AIIDRQLTLNNEAQIFSTAAHC 239
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+ E + + + D L ++ L G + VE G A+ +
Sbjct: 240 HIYYCDERKISYSKSSLHRMPMKNGVMD---LSAVIRHLGELGYHDVWVEAGGAIFTALH 296
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
LV LY + + I + + G ++ V G ++
Sbjct: 297 QEGLVHRTYLYLVPTSLEQNAISAYQQSGLFDRPHT-VSWHAMGDNMM 343
>gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
Japonica Group]
gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa
Japonica Group]
Length = 622
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 27/354 (7%)
Query: 23 GLTSTNPSVACLIVK-----DGI---VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
GLTS +P+ C+I + D V+G G G P AE+ A +EAGE ARGATAY+
Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
LEP YG +++ GI RVVV + P + G+ +Q L +GI VD + E
Sbjct: 129 NLEPGDCYG-DSTAVSTLVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLH 187
Query: 135 KIFLHAYLTRQ-----------VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
L + LK A++ D I + + ++G S+ +V
Sbjct: 188 SKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRV 247
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LR +SDAI+VG TV DDP LT R H P+RI++ L ++ +
Sbjct: 248 FELRGRSDAIIVGGNTVRLDDPRLTARHVK--GHVPVRIVMSQSLNLPEEANLWNVHDAY 305
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
++ L K + ++ D + + +++ RG S+L E G +A S I
Sbjct: 306 TIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAI 365
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
++ ++ + + + +IG P+P+ E + + V + D+ +
Sbjct: 366 SASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLIDVSYEQIDRDMLM 419
>gi|23008993|ref|ZP_00050209.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
[Magnetospirillum magnetotacticum MS-1]
Length = 284
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 115/257 (44%), Positives = 154/257 (59%), Gaps = 1/257 (0%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG
Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAPGGRPHAEPLALAMAG 72
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E ARGAT YVTLEPCSHYGR+PPC + I GIRRVV ++DPD RV+GRG L G+
Sbjct: 73 EAARGATLYVTLEPCSHYGRTPPCTEATIASGIRRVVTAIEDPDPRVAGRGHAQLRAAGL 132
Query: 125 IVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V+ + E H +V + R + LK+A ++D + + ITG I+ V
Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGPIADGAV 192
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
HL RA +DAI+VGIGT ADDP LT RL GL + SP+RI+LD +L+ S +++ A
Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLADRSPVRIVLDSTLRLNPASHLVRGARDL 252
Query: 244 PVIIVTENDDPVLALAF 260
P +++T P A
Sbjct: 253 PTLVLTGRGAPAHARRM 269
>gi|38233905|ref|NP_939672.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38200166|emb|CAE49847.1| Putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae]
Length = 334
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 82/349 (23%), Positives = 133/349 (38%), Gaps = 41/349 (11%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
A++ G T NP V +++ +G ++GRG T G HAE+ AL +AGE +G T
Sbjct: 11 AVQEGEKAWGTTHPNPPVGAVVLSSNGSIVGRGHTQPPGGSHAEIMALRQAGENTKGGTL 70
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
VTLEPC+H+GR+ PC+ I E GI VV + D + G ++L ++G+ V + S
Sbjct: 71 VVTLEPCNHWGRTGPCSHAISESGIEHVVYLMQDTGS-LEKGGAEYLRRQGLKVTFLGLS 129
Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
L + + ++ K A + D + S ITG S++ + R DA
Sbjct: 130 VAA--LIPWQASKDRGWPYVVGKTAHTLDGFVAAEDHSSKWITGSASRDYANRQRRHFDA 187
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
I+VG GTV + L P +
Sbjct: 188 IIVGTGTV--------------------------KADNPALTARKDDGTLLPHQPLKVVI 221
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ + + L+ + RGV +LVEGG + H F+ S +D +
Sbjct: 222 GTSKISEGTQLARSGFVQFSTIEEALVQLW-DRGVRYVLVEGGPHLLHGFLTSGNLDQLH 280
Query: 313 LYRSQIVI----------GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
Y + +++ + S G D+
Sbjct: 281 SYSAPMLLTRGVSLLQEEEKKSAESANTTIASALRGSPQSISMLGDDIL 329
>gi|183982231|ref|YP_001850522.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
marinum M]
gi|183175557|gb|ACC40667.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
marinum M]
Length = 339
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 102/355 (28%), Positives = 158/355 (44%), Gaps = 34/355 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M A+ S G T NP V +IV +G V+G G T G HAEV AL +AG
Sbjct: 10 EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGRVVGIGGTQPSGGDHAEVVALRKAGGL 69
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA A VT+EPC+H+G++PPC +IE + V+ V DP ++G G LS G+ V
Sbjct: 70 AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADP-NGIAGGGAGRLSAAGLQV 128
Query: 127 DRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ + L +L +Q H+T K A S D A S I+ ++ +H
Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLA 243
RA SDAI+VG GTVL DDP LT RL+ + ++ + ++K++
Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKRDIPPEAKVLNDDART 248
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+I E + + AL+ R T +L+EGG +A +F+
Sbjct: 249 MMIKTHEPVEVLRALSDR--------------------------TDVLLEGGPTLAGAFL 282
Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ ++ I+ Y + I++G + + + G D+ L +
Sbjct: 283 RAGAINRILAYVAPILLGGPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLV 337
>gi|126442868|ref|YP_001062584.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
gi|126222359|gb|ABN85864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
Length = 401
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 89/371 (23%), Positives = 139/371 (37%), Gaps = 31/371 (8%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ GI+V++ + ++ + + +R R + + D + + +
Sbjct: 121 ADAGIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAAL 180
Query: 179 SKNQVHLLRAQSD----------------AILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
S+ + L ++ V++ +
Sbjct: 181 SEARDDLRHWRARSSVVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGV 240
Query: 223 ILDPHFKLSLDSKIIKTAL--------LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
+ + + A + V V D A
Sbjct: 241 PTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDRVDHADARPAGAPSASASDTDAGLP 300
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
L L +GV LLV+ A+ + S L D ++LY +P+ L
Sbjct: 301 LPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRL 355
Query: 335 EKNFMCVRRDY 345
V R +
Sbjct: 356 AAAIDDVARRW 366
>gi|58698891|ref|ZP_00373757.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534587|gb|EAL58720.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 167
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 88/163 (53%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A +
Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V
Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
++ + + L+ E +
Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATLLTENRTFTG 165
>gi|86357148|ref|YP_469040.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
minase protein [Rhizobium etli CFN 42]
gi|86281250|gb|ABC90313.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
minase protein [Rhizobium etli CFN 42]
Length = 435
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 146/247 (59%), Positives = 184/247 (74%), Gaps = 1/247 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D FM+AA+R SR H+G T+TNPSV C+IVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCVIVKDGVVVGQAVTALGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I CG+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGDLARGATAYVTLEPCSHHGKTPPCAEALIACGVARVVISVTDPDPRVSGRGISMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI VD + E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG +
Sbjct: 121 EAGIAVDAGVLEAEGRRSLAAYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T
Sbjct: 181 RAEVQTLRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPLLSLPLTSKLVAT 240
Query: 240 ALLAPVI 246
A PVI
Sbjct: 241 ARDVPVI 247
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
YC+ + LL L RG++SLL+EGGA A F+ + L+D I LY++ +VIGEGGI SP
Sbjct: 346 YCNPYHPEVLLPALATRGISSLLIEGGAKTAKLFLEAGLLDRIQLYQAPVVIGEGGIESP 405
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
++ + F + FG D EY +N
Sbjct: 406 VQATDIPSGFTHMGTQLFGVDRLDEYEREN 435
>gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlamydomonas reinhardtii]
gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chlamydomonas reinhardtii]
Length = 684
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 93/371 (25%), Positives = 147/371 (39%), Gaps = 21/371 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGI-VIGRGVTAYGGCPHAEVQAL 60
++ D + AA R + G T +P+ AC +V DG VI + G AEV A+
Sbjct: 42 LTDPDYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAV 101
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG ARG TAY+ LEP +G ++ G+ RVVV + P + RG+ L
Sbjct: 102 SAAGPAARGGTAYLNLEPGDCHGEGAAVEA-LVRSGVSRVVVGLRHPLRHLRSRGIGLLR 160
Query: 121 QKGIIVDRM-----------MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169
G+ V M R +R LK A++ D I
Sbjct: 161 NAGLRVGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLDGKIATNLG 220
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
S ++ S+ V RA+SDA++VG TV D+P LT R G H+P RI++
Sbjct: 221 HSAWVSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLD 278
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
L D+ + L +++ A R + + ++ D + + RG
Sbjct: 279 LPEDANLWDVTLAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQERGFLQ 338
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRD 344
E G +A I S +V ++ + + +IG P+P+ E +
Sbjct: 339 CFWECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVEMTQAVELVDTEWS 398
Query: 345 YFGSDVCLEYI 355
G D+ +
Sbjct: 399 QVGPDLMITGY 409
>gi|145295718|ref|YP_001138539.1| hypothetical protein cgR_1645 [Corynebacterium glutamicum R]
gi|140845638|dbj|BAF54637.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 328
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 109/356 (30%), Positives = 160/356 (44%), Gaps = 39/356 (10%)
Query: 11 MSAALRFSRWH----VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
++ AL + G TS NP V +I+ DG V+G G TA G PHAEV AL AG
Sbjct: 3 IAHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGA 62
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A G TA VTLEPC+HYGR+ PC++ +++ GI V DP + G +L++ G
Sbjct: 63 RANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFP-SAAGGGAFLAEAG-- 119
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
VD E L +L R H+TLK A + D G S ITG ++ VH
Sbjct: 120 VDTHFLDERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHE 179
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R++ DAI+VG GT L D+P LT R + R ++ ++ DS + +
Sbjct: 180 DRSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSREVPADSNLARLGYE--- 236
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + L++L +G +L+EGG +A + +
Sbjct: 237 -------------------------QYAGIPEALSVLWDKGCRDILIEGGPTLAGAALRL 271
Query: 306 RLVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358
+VD + Y + ++G G I P E + F GSDV +E + K
Sbjct: 272 GIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327
>gi|241204003|ref|YP_002975099.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857893|gb|ACS55560.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 438
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 148/249 (59%), Positives = 186/249 (74%), Gaps = 1/249 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D RFM+AA+R SRWH+G T+TNPSV CLIV+ G+++GR VTA GG PHAE QAL
Sbjct: 1 MRITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVRGGVIVGRAVTALGGRPHAETQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG ARGATAYVTLEPCSH+G++PPC+Q +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGALARGATAYVTLEPCSHHGKTPPCSQALIAYGVARVVISVTDPDPRVSGRGIAMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI VD + E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG +
Sbjct: 121 EAGIEVDTGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ QV LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T
Sbjct: 181 RAQVQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPSLALPLTSKLVET 240
Query: 240 ALLAPVIIV 248
A PVI+V
Sbjct: 241 AREVPVIVV 249
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 56/112 (50%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ D A + +++C+ + LL L RG++SLLVEGGA A F+
Sbjct: 325 IPPTDPTDMESRRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLE 384
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD I LY++ +VIGEGGI SPL+ + F FG D EY
Sbjct: 385 AGLVDRIQLYQAPVVIGEGGIESPLDATDIPSGFAHTGTLMFGGDRLDEYER 436
>gi|190891194|ref|YP_001977736.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhizobium etli
CIAT 652]
gi|190696473|gb|ACE90558.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CIAT 652]
Length = 455
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 145/256 (56%), Positives = 184/256 (71%), Gaps = 1/256 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + E+EG+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240
Query: 240 ALLAPVIIVTENDDPV 255
A PVI+V +
Sbjct: 241 AREVPVILVASENVSH 256
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 51/88 (57%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ +VIGEGGI SP
Sbjct: 366 YCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEGGIESP 425
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L+ + F + FG D EY
Sbjct: 426 LDATDIPSGFTHMGTQMFGVDRLDEYER 453
>gi|116251387|ref|YP_767225.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115256035|emb|CAK07116.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 448
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 146/249 (58%), Positives = 185/249 (74%), Gaps = 1/249 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D RFM+AA+R SRWH+G T+TNPSV CLIVKDG+++GR VTA G PHAE QAL
Sbjct: 1 MSITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVKDGVIVGRAVTALSGRPHAETQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EA ARGATAYVTLEPCSH+G++PPC++ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEASALARGATAYVTLEPCSHHGKTPPCSEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI VD + E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG ++
Sbjct: 121 EAGIEVDAGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGEGQVAITGPLA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ Q LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T
Sbjct: 181 RAQAQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPFLALPLTSKLVET 240
Query: 240 ALLAPVIIV 248
A PVI+V
Sbjct: 241 ARQVPVIVV 249
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 54/112 (48%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ D A + +++C+ + LL L RG++SLLVEGGA A F+
Sbjct: 335 IPPTDPTDMDSRRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLK 394
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD + LY++ VIGE GI SPL+ + F FG D EY
Sbjct: 395 AGLVDRVQLYQAPAVIGERGIESPLDATDIPSGFAHTGTLLFGEDRLDEYER 446
>gi|118617420|ref|YP_905752.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
ulcerans Agy99]
gi|118569530|gb|ABL04281.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
ulcerans Agy99]
Length = 339
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 102/355 (28%), Positives = 158/355 (44%), Gaps = 34/355 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M A+ S G T NP V +IV +G V+G G T G HAEV AL +AG
Sbjct: 10 EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGWVVGIGGTQPSGGDHAEVVALRKAGGL 69
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA A VT+EPC+H+G++PPC +IE + V+ V DP ++G G LS G+ V
Sbjct: 70 AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADP-NGIAGGGAGRLSAAGLQV 128
Query: 127 DRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+ + L +L +Q H+T K A S D A S I+ ++ +H
Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLA 243
RA SDAI+VG GTVL DDP LT RL+ + ++ + ++K++
Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKRDIPPEAKVLNDDART 248
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
+I E + + AL+ R T +L+EGG +A +F+
Sbjct: 249 MMIKTHEPVEVLRALSDR--------------------------TDVLLEGGPTLAGAFL 282
Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ ++ I+ Y + I++G + + + G D+ L +
Sbjct: 283 RAGAINRILAYVAPILLGGPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLV 337
>gi|218463058|ref|ZP_03503149.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli Kim 5]
Length = 412
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 142/247 (57%), Positives = 178/247 (72%), Gaps = 1/247 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE ARG T YVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGEAARGGTVYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGISMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI VD + E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG +
Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LRA++D IL GIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T
Sbjct: 181 RAEVQALRAETDTILGGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240
Query: 240 ALLAPVI 246
A PVI
Sbjct: 241 ARDVPVI 247
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 50/88 (56%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ +VIGEGGI SP
Sbjct: 323 YCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPVVIGEGGIESP 382
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L + F + FG D EY
Sbjct: 383 LARTDIPSGFAHMGTQIFGQDRLDEYER 410
>gi|116610344|gb|ABK03068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp.
FB24]
Length = 386
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 98/359 (27%), Positives = 149/359 (41%), Gaps = 39/359 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66
M AAL + +G NP V +++ DG + G G HAE A+ +AG +
Sbjct: 1 MDAALDAAL--LGPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLD 58
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
G+T VTLEPC+H GR+ PCAQ II+ GI VV VDDP +G G L G+ V
Sbjct: 59 LTGSTMVVTLEPCNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSV 117
Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + + + +R +TL IA + D+ I A S I+ S H
Sbjct: 118 RSGLSARAAFELNRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHG 177
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LR++ DAILVG T+L D+P LT R + + +
Sbjct: 178 LRSRVDAILVGTQTLLVDNPRLTARDASGKPAGNQPLRAVMGLR---------------- 221
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
A + +++ RD + L L GV ++VEGG+++ +F+ +
Sbjct: 222 -------GIPDDAAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAA 274
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--------FGSDVCLEYIG 356
LVD +I+Y + ++G G + D G D+ L
Sbjct: 275 GLVDELIVYLAPTLLGSGTAALGDLGITTLADAQAWDWDQASGGAVQSLGRDLRLHLFP 333
>gi|118473539|ref|YP_887383.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
MC2 155]
gi|118174826|gb|ABK75722.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str.
MC2 155]
Length = 335
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 111/368 (30%), Positives = 164/368 (44%), Gaps = 44/368 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M +S M A+ + G T NP V +I+ +DG V G G T G PHAEV A
Sbjct: 1 MSISV--EAAMRLAIDQAEQVKGATYPNPPVGAVILDRDGQVAGVGGTQPTGGPHAEVMA 58
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L A E A G TA VTLEPC+H+GR+PPC ++ GI RVV V DP+ V+ G +
Sbjct: 59 LRAAAERAEGGTAVVTLEPCNHHGRTPPCVDGLVAAGISRVVYAVADPNP-VAAGGSARM 117
Query: 120 SQKGIIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ GI V + + L +L +Q H+T K A S D A S IT
Sbjct: 118 ASSGIEVTSGVLSDEVAGGPLREWLHKQRTGLPHVTWKFATSVDGRSAAADGSSQWITSA 177
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKI 236
++ VH RA +DAI+VG GTV DDP LT RL ++ ++S D+ +
Sbjct: 178 AARADVHRRRAAADAIVVGTGTVFVDDPSLTARLPDGTLADRQPLRVVVGRREVSSDANV 237
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ VI + + + AL+ R T +++EGG
Sbjct: 238 LNDDSRTMVIRTHDPHEVLRALSDR--------------------------TDIMLEGGP 271
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSD 349
+A +F+ + +V+ I+ Y + I++G G+PS + + G D
Sbjct: 272 TLAGAFLRAGVVNRILAYVAPILLGGPITAVDDVGVPSI----AHAQRWRFDCVQTIGPD 327
Query: 350 VCLEYIGK 357
V + +
Sbjct: 328 VLMSLVPN 335
>gi|119961067|ref|YP_947578.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119947926|gb|ABM06837.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 373
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 111/374 (29%), Positives = 163/374 (43%), Gaps = 46/374 (12%)
Query: 1 MPV-----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH 54
M ++ ++ M AAL + G NP V +I+ DG + G G H
Sbjct: 1 MSFVDTSYTAAESEAMDAALTAAL--AGPRGANPLVGAVILSPDGEQLATGYHRGAGTAH 58
Query: 55 AEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
AE A+ EA G + G T VTLEPC+H GR+ PCAQ II GI +V+ VDDP
Sbjct: 59 AEADAISEARKKGIDIVGTTMVVTLEPCNHVGRTGPCAQAIIAAGIAKVIYAVDDPHDPA 118
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCG 170
+G G + LS G+ V +E E + L+ V KR +TL IA + D+ I
Sbjct: 119 AG-GARTLSAAGVEVISGLEGEKALDLNRDWFDAVAAKRPFVTLHIAQTLDSRIAAVDGT 177
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
S I+ S H LR DAILVG GTVL DDP LT R + + I +
Sbjct: 178 SQWISCPESLADNHGLRGLIDAILVGTGTVLVDDPRLTARTPDGELSAHQPIRAVMGLRD 237
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
A R + ++ RD + L +L +GV L
Sbjct: 238 VPQ-----------------------DAAVRGNDGRFVHLPTRDPAEALGMLFEKGVRHL 274
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVR---- 342
+VEGG+++ +F+ + LVD +I+Y + ++G G P+ + +++
Sbjct: 275 MVEGGSSILSTFLAADLVDELIVYLAPTLLGS-GTPALNDLGITTLADAQHWSWDEAGGG 333
Query: 343 -RDYFGSDVCLEYI 355
G+D+ L
Sbjct: 334 AVRILGNDLRLHLR 347
>gi|257067228|ref|YP_003153483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Brachybacterium faecium DSM 4810]
gi|256558046|gb|ACU83893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Brachybacterium faecium DSM 4810]
Length = 355
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 102/370 (27%), Positives = 151/370 (40%), Gaps = 43/370 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ R ++ AL + NP V C+++ DG ++ G G HAE AL A
Sbjct: 4 DTERRALARALEIAADPSVPLGPNPRVGCVLLGADGAMLAEGHHRGAGTAHAEADALARA 63
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GATA VTLEPC+H GR+ PCA+ ++E GI RVV+ DP+ V+ G+ L
Sbjct: 64 RSLGIPLTGATAVVTLEPCAHTGRTGPCAEALLEAGIGRVVIARTDPNP-VASGGIDRLR 122
Query: 121 QKGIIV----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
GI V + + + R +T K A++ D A S ITG
Sbjct: 123 AAGIDVELDVPEALAAAAAALNRGWEHGLRHSRPLVTAKTALTLDGRAAAADGTSQWITG 182
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ +VHLLR D +LVG GT D P LT R H + +
Sbjct: 183 PAAREEVHLLRTTCDTVLVGTGTARIDQPTLTARRPDGALHPRQPL------------RA 230
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ P + E + LA RD L L RG +L+EGG
Sbjct: 231 VMGTSAVPTLPAVEGAGQQVRLA------------TRDPSAALAELFARGARHVLLEGGP 278
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF----GS 348
+ +F+ + LVD +IL+ + ++G G P+ + + V G
Sbjct: 279 TLTAAFLRAGLVDELILHLAPTLLGA-GRPAVADLAISTLADRLDLELVDATPLPSPGGP 337
Query: 349 -DVCLEYIGK 357
D+ L +
Sbjct: 338 TDLRLTLHPR 347
>gi|330752436|emb|CBL87386.1| riboflavin biosynthesis protein [uncultured Flavobacteria
bacterium]
Length = 310
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 101/335 (30%), Positives = 148/335 (44%), Gaps = 32/335 (9%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEARGATAYVTLEPCSHYGRSPP 87
V CLIVKD +IG G T G HAEV A++ E + AT YVTLEPCSH+G++PP
Sbjct: 1 MVGCLIVKDDEIIGEGYTDPYGGSHAEVNAIKSVKNQELLKSATLYVTLEPCSHHGKTPP 60
Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-GKIFLHAYLTRQV 146
C I+ I RVV+ DP +V G+G+ L G V +E K+ +LT
Sbjct: 61 CCDLILSRQIPRVVIGCIDPHEKVCGQGIARLKASGCQVIVGVEEALCKLHHKRFLTYHT 120
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
+KR +I LK A S++ + S I+G +S+ VH RA+ AILVG TV+ D
Sbjct: 121 KKRPYIILKWAQSKNGFVAPKNKNSNRAFWISGKLSRQLVHQWRAEEQAILVGANTVIKD 180
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
+P LT R +P+RI++ + KLS I ++ +
Sbjct: 181 NPSLTTRHVV--GKNPIRIVVSNNKKLSRQLNIFNGDAQTILLNTDKFKID--------- 229
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
++ L + +TSL+VEGG F++ L D ++ I +
Sbjct: 230 --------EPIGTQICDKLFSKKITSLIVEGGPKTLDYFLSENLWDEARIFEGNTDI-KE 280
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
G+ +P + G D K
Sbjct: 281 GVKAP------NISLDSSEVLSVGQDHLWYITNKE 309
>gi|296129704|ref|YP_003636954.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
20109]
gi|296021519|gb|ADG74755.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM
20109]
Length = 386
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 103/353 (29%), Positives = 150/353 (42%), Gaps = 32/353 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M A + G NP V C+++ + G V+G G G PHAEV AL +A G +
Sbjct: 40 MRHAFGLAEQ--GPLGPNPRVGCVLLDRAGAVVGEGWHRGAGTPHAEVAALADARERGAD 97
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATA VTLEPC H GR+ PC+ +++ G+ RVVV V DP+ +G + + +V
Sbjct: 98 VRGATAVVTLEPCDHTGRTGPCSVALLQAGVGRVVVSVQDPNPVAAGGAQRLRAAGVDVV 157
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ EG L A+L R +TLK+A S D A S IT +++ H L
Sbjct: 158 TGVLADEGTRTLGAWLPAVRRGRPFVTLKLAASLDGRAAAADGSSRWITSDVARRHAHGL 217
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
RA+ AI+VG GT L DDP LT R + + + ++ V
Sbjct: 218 RAEVGAIVVGTGTALVDDPSLTARTGDGSLVEHQPLRVVVGHREVPAGARLRGPGGELV- 276
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
D +L L R V +LVEGG +A +F+ +
Sbjct: 277 ----------------------QVRTHDPAVVLAALHEREVRHVLVEGGPTLAAAFLAAG 314
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD + Y + +++G G + V G DV +
Sbjct: 315 LVDEVHAYVAPVLLGAGRAAVGDLGVATIADALRLTPVDVVPLGPDVLVVATP 367
>gi|260551098|ref|ZP_05825302.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
gi|260405865|gb|EEW99353.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624]
Length = 113
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 59/88 (67%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL
Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPC 88
+AGE+A+GATAYVTLEPC+HYGR+PPC
Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPC 88
>gi|325292542|ref|YP_004278406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-5-phosphoribosylamino uracil reductase
[Agrobacterium sp. H13-3]
gi|325060395|gb|ADY64086.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-5-phosphoribosylamino uracil reductase
[Agrobacterium sp. H13-3]
Length = 413
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 140/249 (56%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +FM+ A+ S H G T TNPSV C++VKD +I VTA GG PHAE QAL
Sbjct: 1 MTSRADDEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAEAVTAIGGRPHAERQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E AGE ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L
Sbjct: 61 EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYSILR 120
Query: 121 QKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI+V+ + +GK L YLTRQV+KR H+ LK+A+S D MIG G G V ITG +
Sbjct: 121 EAGIVVETGLLREQGKRALAGYLTRQVKKRPHVILKLAISSDGMIGRQGEGQVAITGPQA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
++ VH LRA+ D ILVGI T +ADDPELT R+ GL++ SP+RI+LD F+L L SK++KT
Sbjct: 181 RHAVHELRARCDCILVGIRTAIADDPELTVRIAGLEDRSPVRIVLDRKFELPLTSKLVKT 240
Query: 240 ALLAPVIIV 248
A PV++
Sbjct: 241 ARDLPVVVA 249
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
LL IL RG++ LLVEGGA A SF+ + LVD I+L+ S +V+GEGGI +PL +
Sbjct: 332 NLLHILAERGMSELLVEGGAFAAKSFLEADLVDRIMLFESPVVVGEGGIETPLSRADIPG 391
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+++ V +G D C +Y
Sbjct: 392 DYVLVSETAYGPDRCFDYERP 412
>gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49]
Length = 221
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 4/207 (1%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++
Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKD 61
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L
Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121
Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
GI V + + L+ +++R R + +K A + D + S ITG
Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDA 181
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDP 205
++ H RA++ AIL GIGTV D+P
Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNP 208
>gi|296448857|ref|ZP_06890691.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
OB3b]
gi|296253636|gb|EFH00829.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium
OB3b]
Length = 375
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 136/368 (36%), Positives = 180/368 (48%), Gaps = 13/368 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
P + D FM+AAL F R ++G T NP+V LIVKDG+VI RG TA GG PHAE A+
Sbjct: 6 PFAQQDDAFMAAALAFGRRNMGRTGPNPAVGALIVKDGVVIARGATAVGGRPHAEAVAVA 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGAT Y TLEPCSH+G +PPC II GI RVV ++DPD RV+GRG L +
Sbjct: 66 AAGEAARGATLYATLEPCSHHGATPPCVDAIIGAGIARVVSALEDPDARVAGRGHARLRE 125
Query: 122 KGIIVDRMMESEGKIFLHAYLT-RQVEKRSHITLKIAVSQDNMIG-MAGCGSVPITGFIS 179
GI V + + H R + R +TLK+A + D + ITG ++
Sbjct: 126 AGIEVAVGVRAREARADHLGHILRVTQGRPLVTLKLAQTADGYAAGAEHDPRLFITGAVA 185
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
H+ RA AI++G GT DDP LT RL GL+ P+R++LD +LS S++ T
Sbjct: 186 DAATHIERALHGAIMIGAGTASVDDPLLTVRLPGLEGVKPLRVVLDAGLRLSRRSRLAAT 245
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-------CRDLKKLLTILVGRGVTSLLV 292
A P +++ A A I L L L RGVT +
Sbjct: 246 ARETPTLVIAGEKVAEAAAAEFFDATAIEVARVAQEASGRLVLSAALAELAARGVTRVFS 305
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348
EGG VA S + L D ++L+ + +G G P+ + GS
Sbjct: 306 EGGPRVAESLLLGALADEVVLHTGRKPLGRPGRLALSPAARARLEDRAAYRLADEAMLGS 365
Query: 349 DVCLEYIG 356
D Y
Sbjct: 366 DHMTRYER 373
>gi|308177749|ref|YP_003917155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Arthrobacter arilaitensis Re117]
gi|307745212|emb|CBT76184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Arthrobacter arilaitensis Re117]
Length = 346
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 102/370 (27%), Positives = 144/370 (38%), Gaps = 42/370 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59
M + + AL + G NP V ++ +G +I G G PHAEV A
Sbjct: 1 MITTEQLDAALRTALETA--GRGYRGANPLVGACVLDAEGNIIATGFHLGAGHPHAEVDA 58
Query: 60 LEEAGE----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
L G+ +AR T VTLEPC+H GR+ PCA+ I E GI +V V D + G
Sbjct: 59 LRRLGKMSPAKARELTMVVTLEPCNHTGRTGPCARAIAEAGIGQVHYAVPDNT--AASGG 116
Query: 116 LQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+L +GI + + + E R IT+KIA S D I S I
Sbjct: 117 ADYLRSQGIQATQLECSDAARNLNQRWFIAKAEGRPFITVKIAQSLDGRINAPDGTSKWI 176
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
T S+N H LR++ DAI+VG T + DDP LT R + H L + +
Sbjct: 177 TSEASRNHAHGLRSRVDAIMVGTNTAVIDDPRLTARTPTGELHERQPFRLVMGERELPN- 235
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + RD+ + + G LLVEG
Sbjct: 236 -----------------------DLALMQGDDWEQILTRDVHEAIVRANELGFGHLLVEG 272
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMC-----VRRDYF 346
GA VA +FI + L D I Y++ ++IG G + + F
Sbjct: 273 GATVASAFIAADLADEIYCYQAPLMIGAGSSSVNMPSTSTLSEARRFRLDSASRESLTRL 332
Query: 347 GSDVCLEYIG 356
G D+ L
Sbjct: 333 GDDIALHLEP 342
>gi|255602376|ref|XP_002537841.1| riboflavin-specific deaminase, putative [Ricinus communis]
gi|223514866|gb|EEF24541.1| riboflavin-specific deaminase, putative [Ricinus communis]
Length = 110
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 57/109 (52%), Positives = 76/109 (69%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++S D +M+ ALR + + T+ NP V C+IVK+G ++G G G PHAEV AL
Sbjct: 1 MQMTSQDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV + DP+
Sbjct: 61 RAAGEQARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPNP 109
>gi|225629653|ref|ZP_03787646.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591494|gb|EEH12541.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 130
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/126 (48%), Positives = 83/126 (65%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A +
Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V
Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122
Query: 127 DRMMES 132
++ +
Sbjct: 123 EQGIMQ 128
>gi|329946974|ref|ZP_08294386.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
170 str. F0386]
gi|328526785|gb|EGF53798.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon
170 str. F0386]
Length = 400
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 142/335 (42%), Gaps = 41/335 (12%)
Query: 26 STNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSH 81
NP V C+I+ DG V+ G G HAEV AL AG A+G TA VTLEPC H
Sbjct: 41 GPNPRVGCVILSADGDVLAEGHHRGAGTAHAEVDALTNLAAAGASAQGTTAVVTLEPCDH 100
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
GR+ PC Q ++ G+ V+ D +G G L G+ V R + S+ L+
Sbjct: 101 EGRTGPCVQALLAAGVAEVIYA-QDDPTEQAGGGAATLEAAGVRVRRGLCSQDAARLNRP 159
Query: 142 LT-RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R +T K+A + D I A S IT ++ H LR Q DA++VG GT
Sbjct: 160 WFLAVTRGRPMVTWKLAATLDGRIAAADGTSRWITPAAARRDAHHLRRQCDAVMVGTGTA 219
Query: 201 LADDPELTCRLN---GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
LADDP LT R H ++ +L S+++
Sbjct: 220 LADDPALTVRDETGEPAPTHLQPLRVVVGSRRLPPASRVLADDH---------------- 263
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ D + +L +L R + +L+EGG +A +F+ + +VD ++ Y +
Sbjct: 264 ---------YLLLPDHDPRTVLAVLAEREIRHVLLEGGPTLATAFLRAGVVDEVVAYTAP 314
Query: 318 IVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFG 347
++G G P+ L + R + G
Sbjct: 315 ALLGAG--PAALADFGATTITDALRLRHPRVEVLG 347
>gi|262202280|ref|YP_003273488.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
43247]
gi|262085627|gb|ACY21595.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM
43247]
Length = 333
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 104/354 (29%), Positives = 157/354 (44%), Gaps = 35/354 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ S G+++ NP V +IV + G ++G G TA G PHAE+ AL +AG ARG
Sbjct: 7 MRQAITESAAAQGVSTPNPPVGAVIVDRAGTIVGVGHTAPPGGPHAEIVALTQAGAAARG 66
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA VTLEPC+H GR+ PC+Q +I G+ V V DP+ + G L G+ VD
Sbjct: 67 ATAVVTLEPCNHTGRTGPCSQALIAAGVAHVCFGVADPNP-TAAGGADTLRAAGVSVDAG 125
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + L +L RQ R +T+K+A S D + + S +TG ++ H R
Sbjct: 126 VLADEVAAGPLQPWLHRQTTGRPFVTVKLATSIDGRVAASDGTSQWVTGPAARAHAHERR 185
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
++ DAI+VG GT LADDP LT R + + + ++ + +
Sbjct: 186 SRIDAIVVGTGTALADDPSLTARRPDGTRYPHQPTRVVVGHRDLPADANLRDDAAPLLRV 245
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T VL +LVEGG +A +F+ + L
Sbjct: 246 ATREPAEVLDALDDALW-------------------------VLVEGGPTLAGAFVAAGL 280
Query: 308 VDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
VDS+ Y + +++G G +P+ + F G DV +
Sbjct: 281 VDSVEAYVAPVLLGAGRNAVDVPT-ITTLADAVRFTTREVVGLAGGDVFVRMSR 333
>gi|134098691|ref|YP_001104352.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
gi|133911314|emb|CAM01427.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
Length = 345
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 103/352 (29%), Positives = 153/352 (43%), Gaps = 30/352 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
M A+ + G TS NP V C+++ + T G PHAEV AL EAGE ARG
Sbjct: 14 MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 73
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPCSH GR+PPC ++ G+ RVV V DP V+ G L G+ V
Sbjct: 74 GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 132
Query: 130 MESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ +E L A+L R H+T K A + D A S I+ ++ +VH LR
Sbjct: 133 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 192
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DA++ G GTVLADDP+LT R H + + + + +++
Sbjct: 193 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRPVPAGARVLDDTAETLLL 252
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ D +L L GRG +L+EGG +A +F +
Sbjct: 253 PASDPDT-----------------------VLAELAGRGAVDVLLEGGPVLAGAFAAAGR 289
Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+D ++ Y + ++G G + + + G DV + +
Sbjct: 290 IDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 341
>gi|291003622|ref|ZP_06561595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
Length = 348
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 103/352 (29%), Positives = 153/352 (43%), Gaps = 30/352 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
M A+ + G TS NP V C+++ + T G PHAEV AL EAGE ARG
Sbjct: 17 MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 76
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPCSH GR+PPC ++ G+ RVV V DP V+ G L G+ V
Sbjct: 77 GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 135
Query: 130 MESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ +E L A+L R H+T K A + D A S I+ ++ +VH LR
Sbjct: 136 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 195
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DA++ G GTVLADDP+LT R H + + + + +++
Sbjct: 196 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRPVPAGARVLDDTAETLLL 255
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ D +L L GRG +L+EGG +A +F +
Sbjct: 256 PASDPDT-----------------------VLAELAGRGAVDVLLEGGPVLAGAFAAAGR 292
Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+D ++ Y + ++G G + + + G DV + +
Sbjct: 293 IDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 344
>gi|254822405|ref|ZP_05227406.1| riboflavin biosynthesis protein RibD [Mycobacterium intracellulare
ATCC 13950]
Length = 341
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 101/372 (27%), Positives = 157/372 (42%), Gaps = 46/372 (12%)
Query: 1 MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGC 52
M VS D M A+ S G T NP V +I+ G T G
Sbjct: 1 MTVSPGDGLDAAMRLAIEQSTLVKGTTYPNPPVGAVILD-----AGGEVVGVGGTEPAGG 55
Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
HAE+ AL AG+ A G T VTLEPC+HYG++PPC +++ + VV V DP+ + +
Sbjct: 56 DHAEILALRRAGDLAAGGTVVVTLEPCNHYGKTPPCVNALLDANVATVVYAVADPNPQAA 115
Query: 113 GRGLQWLSQKGIIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
G G L + G+ V + + + L +L +Q H+T K A S D A
Sbjct: 116 G-GAARLEEAGVAVRSGVLADEVARGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGS 174
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
S I+ S+ +H R DAI+VG GTVLADDP LT RL + + + +
Sbjct: 175 SQWISSEASRLDLHRRRGACDAIVVGTGTVLADDPALTARLPDGSLAARQPLRVVVGMRE 234
Query: 231 -SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
++K++ +I + + + A++ R T
Sbjct: 235 IPSEAKVLNDDSRTMLIRTHDPAEVLKAVSDR--------------------------TD 268
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYF 346
+L+EGG +A +F+ + VD I+ Y + ++G + + D
Sbjct: 269 VLLEGGPTLAGAFLRAGAVDRILAYVAPTLLGGPVTAVDDVGVSTIARALRWQFDGIDRV 328
Query: 347 GSDVCLEYIGKN 358
G DV L + ++
Sbjct: 329 GPDVVLSLVPRS 340
>gi|226200200|ref|ZP_03795745.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
gi|225927708|gb|EEH23750.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 88/354 (24%), Positives = 136/354 (38%), Gaps = 24/354 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ ALR + + T NP V C+I + +G G G PHAEV AL EAGE ARGA
Sbjct: 1 MAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREAGERARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++
Sbjct: 61 TAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ ++ + + +R R + + D + + +S+ + L +
Sbjct: 121 LAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEARDDLRHWR 180
Query: 190 SDAILV------------------GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
+ + LV D L + + S
Sbjct: 181 ARSSLVLERAPDAGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGVPTLALHRDDNS 240
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ + V D A L L +GV LL
Sbjct: 241 ASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPLPDAFARLARQGVNELL 300
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
V+ A+ + S L D ++LY +P+ L V R +
Sbjct: 301 VDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDDVARRW 349
>gi|298250252|ref|ZP_06974056.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
gi|297548256|gb|EFH82123.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM
44963]
Length = 372
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 173/367 (47%), Gaps = 19/367 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D M A+ + G T+ P V ++V+DG+V+G+G T+ PHAEV AL +AGE
Sbjct: 2 DDQEAMRLAIAHAHSVEGRTAPRPPVGAVVVRDGVVVGQGATSPPYGPHAEVHALNDAGE 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGA YVTLEPC +PPC + I+ GIR V+V DP+ VSG+GL L + G+
Sbjct: 62 LARGADLYVTLEPCCVTIHTPPCTRAILAAGIRHVIVSSLDPNPLVSGQGLTQLREAGVE 121
Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + +E + T ++R ++T K A++ D I + I+G ++ VH
Sbjct: 122 VTVGVGAEETDEIIRPFATFIRQQRPYVTAKWAMTLDGKIATHSSDAYWISGSEARRWVH 181
Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII 237
LR + DAILVG GTV ADDP LT R P+R++L L SK++
Sbjct: 182 NLRDRVDAILVGSGTVRADDPMLTVRLTDEERLYARAPRQGPLRVVLASQGALPAQSKLL 241
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL------VGRGVTSLL 291
+ L + I+ D PV + + + L + +GV +L
Sbjct: 242 QPDLASDTCIIVGEDCPVEQQQRLRDTGVEVIQVASNNTSQLDLTSALSALAQKGVMHVL 301
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346
+EGG + S + + +D + + + ++G SPL L VR
Sbjct: 302 IEGGNSTLGSAFDQQRIDHVAAFIAPKLVGGEAALSPLGGKGLAFMREALQLQQVRIQII 361
Query: 347 GSDVCLE 353
G DV +E
Sbjct: 362 GEDVLIE 368
>gi|85710330|ref|ZP_01041395.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
gi|85689040|gb|EAQ29044.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1]
Length = 315
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 115/337 (34%), Positives = 153/337 (45%), Gaps = 47/337 (13%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
NP VA L+V+ VI RG T GG PHAE AL E A+GAT YVTLEPC+H +
Sbjct: 17 PNPGVAALLVQGNCVIARGWTQGGGRPHAEAIALAGIAEGGAKGATLYVTLEPCAHQSQR 76
Query: 86 PPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
P ++ RVV+ DPD R +G G + + + GI V + + + L YLTR
Sbjct: 77 GPACTDLVIAARPSRVVIGQLDPDPRTAGLGAKRIQRAGIAVTVLDDDVARASLAGYLTR 136
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R H+TLK+A+S D I +A S ITG ++ VH RAQ DAILVG GT AD
Sbjct: 137 AALGRPHVTLKLAMSLDGAIALASGASQWITGEAARAHVHSRRAQHDAILVGGGTWRADK 196
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P L RL GL+ SP R++L
Sbjct: 197 PRLDVRLPGLEARSPDRVLLTRG------------------------------------- 219
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ + + I GV L VEGGA A SF+ +VD + +YR+ I+IG G
Sbjct: 220 --VAPDGVTVINEPAQIAALDGVQYLYVEGGAGAAASFLAEDMVDELHIYRAPILIGS-G 276
Query: 325 IPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+P+ + G + GSD Y+
Sbjct: 277 LPALSDIGLASLADAHGRWRHCESRQLGSDTFTSYLR 313
>gi|309810737|ref|ZP_07704545.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
gi|308435368|gb|EFP59192.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185]
Length = 340
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 96/361 (26%), Positives = 152/361 (42%), Gaps = 40/361 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M A + + NP V C++V DG+++ G G HAE A+ EA G +
Sbjct: 1 MERAAQLAALS-PRVDPNPRVGCVVVDADGVILAEGYHRGAGTWHAEAAAINEAIATGVD 59
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATAYVTLEPC+H GR+P CA+ +I G+ RVV DP + G Q L + G+ V
Sbjct: 60 LRGATAYVTLEPCAHTGRTPSCARALIRAGVARVVFGQPDP-NGAAAGGAQILREAGVAV 118
Query: 127 DRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
+++ + + + R + K A + D + S ITG ++ VH
Sbjct: 119 EQVDTLAAASRDLNADWTFSVTHARPFVRWKYASTLDGFSAASDGTSQWITGPAARVDVH 178
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
RA+ AI+VG GTVLADDP+LT R + + + D+ + +
Sbjct: 179 AQRAEHGAIVVGTGTVLADDPQLTVRDAQGRAGVQQPLRVVVGDTPIPDTARVLDDAAST 238
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
++ + +L L RG+ ++ +EGG +A F+
Sbjct: 239 LV-----------------------LPRQSPTDVLAALHARGIHAVWLEGGPTLAAVFLR 275
Query: 305 SRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYF------GSDVCLEYI 355
+ LVD I+ Y + ++G G + + F V +D+ L
Sbjct: 276 AGLVDEIVAYLAPALLGAGRPAAADLGITTIAEARRFDLVDATTLPSNEPSATDLRLRLR 335
Query: 356 G 356
Sbjct: 336 P 336
>gi|159471802|ref|XP_001694045.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277212|gb|EDP02981.1| predicted protein [Chlamydomonas reinhardtii]
Length = 121
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/121 (49%), Positives = 78/121 (64%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++ AL ++ G T NP+V C+IVKDG V+G G G PHAEV AL AG
Sbjct: 1 QDRAYILKALELAKRAQGKTHPNPAVGCVIVKDGKVVGEGYHPKAGMPHAEVYALRGAGN 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GATAYVTLEPC+HYGR+PPC++ ++E + RVVV V DP+ V+ G+ L + GI
Sbjct: 61 NAEGATAYVTLEPCNHYGRTPPCSRALVEAKVARVVVGVGDPNPLVAAEGIATLEKAGIQ 120
Query: 126 V 126
V
Sbjct: 121 V 121
>gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group]
Length = 577
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 85/343 (24%), Positives = 141/343 (41%), Gaps = 50/343 (14%)
Query: 23 GLTSTNPSVACLIVK-----DGI---VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
GLTS +P+ C+I + D V+G G G P AE+ A +EAGE ARGATAY+
Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
LEP YG S + + E ++V
Sbjct: 129 NLEPGDCYGDSTAVSTLVQEALKSCLIVN------------------------------- 157
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
L R + LK A++ D I + + ++G S+ +V LR +SDAI+
Sbjct: 158 ----APLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 213
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VG TV DDP LT R H P+RI++ L ++ + ++
Sbjct: 214 VGGNTVRLDDPRLTARHVK--GHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 271
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
L K + ++ D + + +++ RG S+L E G +A S I++ ++ + +
Sbjct: 272 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 331
Query: 315 RSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
+ +IG P+P+ E + + V + D+ +
Sbjct: 332 LAPKIIGGVNAPTPVGELGMNQMTQAIDLIDVSYEQIDRDMLM 374
>gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group]
Length = 558
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 85/343 (24%), Positives = 141/343 (41%), Gaps = 50/343 (14%)
Query: 23 GLTSTNPSVACLIVK-----DGI---VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
GLTS +P+ C+I + D V+G G G P AE+ A +EAGE ARGATAY+
Sbjct: 50 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 109
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
LEP YG S + + E ++V
Sbjct: 110 NLEPGDCYGDSTAVSTLVQEALKSCLIVN------------------------------- 138
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
L R + LK A++ D I + + ++G S+ +V LR +SDAI+
Sbjct: 139 ----APLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 194
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VG TV DDP LT R H P+RI++ L ++ + ++
Sbjct: 195 VGGNTVRLDDPRLTARHVK--GHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 252
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
L K + ++ D + + +++ RG S+L E G +A S I++ ++ + +
Sbjct: 253 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 312
Query: 315 RSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
+ +IG P+P+ E + + V + D+ +
Sbjct: 313 LAPKIIGGVNAPTPVGELGMNQMTQAIDLIDVSYEQIDRDMLM 355
>gi|319442108|ref|ZP_07991264.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Corynebacterium variabile DSM 44702]
Length = 353
Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 113/344 (32%), Positives = 156/344 (45%), Gaps = 43/344 (12%)
Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80
G TS NP V +I+ DG V+G G T+ G PHAEV AL EAGE+ARG TA VTLEPC+
Sbjct: 31 RGTTSPNPPVGAVILSVDGDVVGTGGTSPVGGPHAEVNALAEAGEKARGGTAVVTLEPCN 90
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-------E 133
H GR+ PCA ++E GI RVV DP G G ++L G+ V + +
Sbjct: 91 HTGRTGPCALALLEAGIARVVYAFADPGD-AEGGGAEFLRSHGVPVTGPLVTGDTGLDGV 149
Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
+ + +L + R H+TLK A + D S ITG ++ VHL R++ DAI
Sbjct: 150 PQFSVEPWLASRRLGRPHVTLKYAGTLDGFAAATDGTSQWITGESARALVHLDRSRRDAI 209
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
+VG GT+LADDP LT R + +++ PV
Sbjct: 210 IVGTGTILADDPRLTARR------------PEGGLYDHQPERVVVGRTDVPVDAAVFPAL 257
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
A L ++L L RG+ +L+EGG +A SFI LVD++
Sbjct: 258 RYRGGA---------------LAEVLADLGARGIVDVLIEGGPHIAASFIADGLVDAVDA 302
Query: 314 YRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVC 351
Y + ++G GIP+ F D D+
Sbjct: 303 YTAPALLGA-GIPTVAPAASTATTIGGISRFTLRSVDVVDGDIV 345
>gi|330814131|ref|YP_004358370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Pelagibacter sp. IMCC9063]
gi|327487226|gb|AEA81631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Pelagibacter sp. IMCC9063]
Length = 355
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 6/310 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
F AL +R + +T NPSV C++ + ++ GVT+ G PHAE AL + ++
Sbjct: 11 KYFSELALSLARINKFITKENPSVGCVVTDFNNNILSSGVTSKNGRPHAENNALIKLNKK 70
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+VTLEPC+HYG++PPC + I+ ++++ D + V+G GL++L + I +
Sbjct: 71 ITK-KIFVTLEPCNHYGKTPPCTKKIVNFNVKQLHCNQIDKNPAVNGSGLKFLKENKIKI 129
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
++ + Y + L + G T S HLL
Sbjct: 130 KESNINKNFYSNYNYSVKNKLPYVTAKL----AITKNFSTVVSGKKYFTNSKSLKFAHLL 185
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R +D+IL+G T+L D P+L CR+ GL +HSP ++ + + ++
Sbjct: 186 RYMNDSILIGQKTLLKDYPKLNCRIEGLSQHSPKIFFINRNLNFNKKHLLLYPRSTVVFH 245
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
++ + +++L + LL+EGG+ + F ++
Sbjct: 246 SSKDSKKISKYKKYFFLEKIEDNTGNFSPEEILKRIYKHKCRRLLIEGGSETVNIFAKNK 305
Query: 307 LVDSIILYRS 316
V+ +S
Sbjct: 306 YVNKFFFIQS 315
>gi|302769374|ref|XP_002968106.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
gi|300163750|gb|EFJ30360.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii]
Length = 375
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 88/363 (24%), Positives = 160/363 (44%), Gaps = 22/363 (6%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG
Sbjct: 24 DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 83
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+
Sbjct: 84 SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 143
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E E ++ A+ R V K+ L+ A++ D + + ++ +
Sbjct: 144 EVTVGVEEELCRVTNEAFFHRIVTKKPFACLRYAMTIDGCLLAD------PSTPVAASFY 197
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241
+ DA++ ++ AD L+ Q + + L S +
Sbjct: 198 SQQLEEYDAVVTTEASLDADPVLLSAEQGAKQPLRVVAVTSSSSLSQLAGLLSARVFDTK 257
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GGAAVA 299
LAP +++ + + + RK + + L + RG S+L++ G +
Sbjct: 258 LAPTLLLGGKGESMETVLRRKNVEVVPVNEVDLDSVL-DLCYQRGACSVLLDSTAGFDML 316
Query: 300 H---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + ++ + + + G + + G +V ++
Sbjct: 317 GVKEALEDEDRAVIQKLCVVVAPFAGGGQTQKV----ASSMRKLGRLTTRKCGENVVIQG 372
Query: 355 IGK 357
+
Sbjct: 373 YFE 375
>gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa]
gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa]
Length = 592
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 93/365 (25%), Positives = 167/365 (45%), Gaps = 20/365 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S DA ++ A + + G +S +P+ C+I GIV G G G AEV A+E A
Sbjct: 33 SLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAGEGYLYAQGTKAAEVLAVEAA 92
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G ++G+TAY+ +EP +G + +++ GI RVVV + P + G ++ L +G
Sbjct: 93 GGFSKGSTAYLNMEPGDCHGDQSAVSA-LVQAGITRVVVGIRHPLQHLHGNAIRSLRGQG 151
Query: 124 IIVDRMMESEGKIFLHAYLTRQ-----------VEKRSHITLKIAVSQDNMIGMAGCGSV 172
+ VD + E + + LK A++ D I +
Sbjct: 152 LQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLDGKIATTSGHAT 211
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
I+ S+N+V LR +SDAI+VG TV D+P LT R G H+P+RI++ F L
Sbjct: 212 WISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGG--GHTPIRIVMTQTFNLPE 269
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
++ + + ++ +++ K + ++ D + ++++ RG S+L
Sbjct: 270 EANLWDISDVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILW 329
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRR--DYFG 347
E G +A S I+S ++ + + + +IG PSP+ E + + + + G
Sbjct: 330 ECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQALDLIDVCFEQVG 389
Query: 348 SDVCL 352
D+ +
Sbjct: 390 PDMLI 394
>gi|300741401|ref|ZP_07071422.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
gi|300380586|gb|EFJ77148.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567]
Length = 374
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 97/365 (26%), Positives = 147/365 (40%), Gaps = 37/365 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA-- 63
D R MS A+ +R G+ NP V +I G V+ G G PHAE AL +A
Sbjct: 3 DDRAMSLAIEAARQ--GIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADALAQARA 60
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G + A YV+LEPC+H G++ PC+ I E GI +V D + SG G ++L
Sbjct: 61 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 119
Query: 123 GIIVDRMMESEGKIFLHAYLTRQV--EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI+ M E + EKR IT+K A + D I A S ITG ++
Sbjct: 120 GIVTTYMREFADDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 179
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
HL+R ++DA+++G T L D+P L R Q + ++ + I +
Sbjct: 180 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQP------LRVVMGETDIPST 233
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + ++ + + + LL L RGV L++EGG +
Sbjct: 234 YKVCGLGTRDPEN-------------YMQVYTHEPRVLLDELYSRGVRHLMIEGGPGMVG 280
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVR------RDYFGSDVC 351
F L+D ++ YR+ I++G G G D
Sbjct: 281 LFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMLPAVRVLGEDTA 340
Query: 352 LEYIG 356
I
Sbjct: 341 THLIP 345
>gi|296170729|ref|ZP_06852302.1| riboflavin biosynthesis protein RibD [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894612|gb|EFG74348.1| riboflavin biosynthesis protein RibD [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 340
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 50/363 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQALEEAG 64
M A+ S+ G T NP V +++ GV T G HAEV AL AG
Sbjct: 12 MRLAIEQSKQVKGTTYPNPPVGAVVLD-----AGGVVVGVGGTEPAGGDHAEVLALRRAG 66
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A G TA VTLEPC+H+GR+PPC ++E + VV V DP+ +G +
Sbjct: 67 DLAAGGTAVVTLEPCNHHGRTPPCVNALLEAKVATVVYAVADPNPAAAGGAARLAEAGVQ 126
Query: 125 IVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+ ++ E L +L +Q H+T K A S D A S I+ S+ +
Sbjct: 127 VTGGVLADEVAGGPLREWLHKQRTGSPHVTWKYASSVDGRSAAADGTSQWISSEASRLDL 186
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALL 242
H RA +DAI+VG GTVLADDP LT RL + + + + ++K++
Sbjct: 187 HRRRATADAIVVGTGTVLADDPTLTARLPDGSLAARQPLRVVVGMREIPSEAKVLNDDSR 246
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
VI + + + AL+ R T +L+EGG +A +F
Sbjct: 247 TMVIRTHDPMEVIKALSDR--------------------------TDVLLEGGPTLAGAF 280
Query: 303 INSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + +V+ I++Y + +++G G+P+ + D G D+ L +
Sbjct: 281 LRAGVVNRILVYVAPMLLGGPVSAVDDVGVPTI----ARALRWQFDGVDRVGPDLLLSLV 336
Query: 356 GKN 358
+
Sbjct: 337 PRR 339
>gi|270684433|ref|ZP_06222817.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
HK1212]
gi|270316231|gb|EFA28189.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
HK1212]
Length = 94
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/87 (55%), Positives = 58/87 (66%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALA 62
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPC 88
+AGE A+GATAYVTLEPCSHYGR+PPC
Sbjct: 63 QAGENAKGATAYVTLEPCSHYGRTPPC 89
>gi|170741291|ref|YP_001769946.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
gi|168195565|gb|ACA17512.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46]
Length = 398
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 128/374 (34%), Positives = 172/374 (45%), Gaps = 32/374 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60
S D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE AL
Sbjct: 21 SLDRRYMRLALALGRRHLGRTWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERVAL 80
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE ARGAT YVTLEPCSH+GR+ PCA ++ G+ RVV ++DPD RV+GRG L
Sbjct: 81 AEAGEAARGATLYVTLEPCSHHGRTSPCADAVLAAGVARVVSAMNDPDPRVAGRGHGRLR 140
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
G+ V +E HA +V + G G + ITG ++
Sbjct: 141 AGGVAVTVGPCAEEAARDHAGHVMRVTTGRPALCLKLARTADGFAAGGAGRLLITGALAN 200
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+VH LRA SDAILVGIGT LADDP LT RL GL + SP+ ++LDP +L +++++
Sbjct: 201 AEVHRLRAHSDAILVGIGTALADDPALTVRLPGLGDRSPLPVVLDPQLQLPPGARLLRPG 260
Query: 241 LLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
A +I+ P + DL L L RG+T + EG
Sbjct: 261 GRAQTLILAGAAAPPAAERALREAGAEVLRLPAGPDGRPDLAASLRALGARGITRVFCEG 320
Query: 295 GAA----------VAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEKNFMCVR 342
G V + + + +G+ G P+ P L V
Sbjct: 321 GPTLADALAAADLVDSCLLLTGA--------AP--LGQPGKPAIGPALAARLAGGLRRVA 370
Query: 343 RDYFGSDVCLEYIG 356
G D Y
Sbjct: 371 ERPLGPDRLTTYAR 384
>gi|6226765|sp|O24750|RIBD_CORAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|21914864|dbj|BAA20053.1| ribG [Corynebacterium ammoniagenes]
Length = 337
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 101/318 (31%), Positives = 144/318 (45%), Gaps = 26/318 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ + A+ G TS NP V +I+ G ++G G T G HAEVQAL +A +
Sbjct: 16 EQALRTAMSAGWEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGK 75
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125
GATA VTLEPC H GR+ PC Q +IE GI+ V+ DP+ +G G Q L GI +
Sbjct: 76 TEGATAVVTLEPCRHTGRTGPCTQALIEAGIKDVLFLHSDPNP-SAGGGEQVLVDAGINV 134
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V L +L +R H+TLK A + D A S ITG ++++ VH
Sbjct: 135 VQLPSPEGVPDALIPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHA 194
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
R DAI++G GT L D+P LT R + + + D+ + L
Sbjct: 195 DREHRDAIIIGTGTALIDNPSLTARYPDGTQREHQPRRVVIGRRNIADAGDAASNLNRLG 254
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + L L G +LVEGGA +A F N
Sbjct: 255 FEQYA-----------------------TIDEALAELYATGARDVLVEGGAGLASGFANQ 291
Query: 306 RLVDSIILYRSQIVIGEG 323
LVD + +Y++ +++GEG
Sbjct: 292 GLVDWLQVYQAPLLLGEG 309
>gi|21672710|ref|NP_660777.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091139|sp|Q8K9A4|RIBD1_BUCAP RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
gi|21623353|gb|AAM67988.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 147
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 91/140 (65%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ A++ S+ TS NP+V C+IV++ ++G G G HAE+ AL AGE+
Sbjct: 3 DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+G+TAY+TLEPC+H+G++PPC II+ GI+ V++ DP+ +VSG+G+ +L +KGI V
Sbjct: 63 AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122
Query: 127 DRMMESEGKIFLHAYLTRQV 146
+ S+ + +++
Sbjct: 123 KIGLMSKESQKYNKGFFKRM 142
>gi|254445886|ref|ZP_05059362.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
DG1235]
gi|198260194|gb|EDY84502.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium
DG1235]
Length = 377
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/358 (21%), Positives = 132/358 (36%), Gaps = 15/358 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-G 69
M AL +R G T P + +V+ G V+ G EV+ E G + + G
Sbjct: 1 MKVALEEARKGWGCTHPQPMIGAALVEAGQVVATSYIEQPGSTAPEVRLFERLGRKPKEG 60
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A+ ++TLEP R + II+ G+ VV+ DP + +G L + G+ V+R
Sbjct: 61 ASLFLTLEPGPSSNRLESGVRAIIDSGVSYVVIGASDPMPEHANKGADALKEGGVKVERR 120
Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + + + K A + D I S ITG ++ V R
Sbjct: 121 ILIEDCEDLNIISNFWVQNRIPIFAAKSATTLDGKIACRSGESKWITGEQARQNVMKWRR 180
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK--------IIKTA 240
+I VG GT++ DDP LT R+ G E PMR + D + ++
Sbjct: 181 LFPSIAVGAGTLVEDDPRLTSRIEGEPEWCPMRFVFDGLLRTAMGQYLPSIYTDDFRDNT 240
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++ L + + G+ + EGG+ +
Sbjct: 241 IVVTTDAAGTGYIRRLETEGVNVWVLPVENMKVPFSVFRKRCADVGINGVYFEGGSRLVS 300
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCLE 353
++ R ++ YR+ I++G+ S E+ VR + FG D +
Sbjct: 301 ELLHMRELNYHFNYRAPILLGDDKAKSVYRGLRTEKLAQAIRLEKVRHEMFGDDQLMR 358
>gi|260904122|ref|ZP_05912444.1| riboflavin biosynthesis protein RibD [Brevibacterium linens BL2]
Length = 359
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 39/366 (10%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQAL 60
+ + MSAAL+ +R G NP V I +D ++ G A G PHAEV A+
Sbjct: 4 EFTELETTAMSAALQAARN--GHRGANPLVGAAILTRDSQIV-VGHHAGAGSPHAEVDAI 60
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A G + +T +VTLEPC+H GR+ PC Q II+ GI VV + D + +G G
Sbjct: 61 TTAIDLGVDLTASTLFVTLEPCNHIGRTGPCTQAIIDAGIPEVVFALSDSNGVAAGGGAT 120
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+ + E + +R +T+KIA S D M+ + S IT
Sbjct: 121 LAEAGVRVRSGLGHDESSALNARWSRAVDAERPFVTVKIAQSLDGMVAASDGTSQWITSA 180
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
S+ H R++ D ILVG GTVLADDP L R G + +
Sbjct: 181 ASRVHSHKYRSRVDGILVGTGTVLADDPRLNARGPGGDPLESQPVPIVLGL--------- 231
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ + +F N + ++ RD+ L L RG+ +LVEGG +
Sbjct: 232 ---------------TSLPSESFLALNPDTVHLRTRDITAALGELHARGMRHILVEGGPS 276
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEKNFMCVR-------RDYFGSD 349
V +F + +VD + Y++ +++G G S L L + V G+D
Sbjct: 277 VLGAFFAAGVVDEVFCYQAPLLVGAGTSSLSGLGTSTLSEAVGLVSDETAEPAITQLGAD 336
Query: 350 VCLEYI 355
V L ++
Sbjct: 337 VLLHFV 342
>gi|304570635|ref|YP_831168.2| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arthrobacter sp. FB24]
Length = 407
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 143/347 (41%), Gaps = 37/347 (10%)
Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---EARGATAYVTLEP 78
G NP V +++ DG + G G HAE A+ +AG + G+T VTLEP
Sbjct: 32 GPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLEP 91
Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF- 137
C+H GR+ PCAQ II+ GI VV VDDP +G G L G+ V + +
Sbjct: 92 CNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFEL 150
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
+ + +R +TL IA + D+ I A S I+ S H LR++ DAILVG
Sbjct: 151 NRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVGT 210
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
T+L D+P LT R + + +
Sbjct: 211 QTLLVDNPRLTARDASGKPAGNQPLRAVMGLR-----------------------GIPDD 247
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A + +++ RD + L L GV ++VEGG+++ +F+ + LVD +I+Y +
Sbjct: 248 AAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVYLAP 307
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDY--------FGSDVCLEYIG 356
++G G + D G D+ L
Sbjct: 308 TLLGSGTAALGDLGITTLADAQAWDWDQASGGAVQSLGRDLRLHLFP 354
>gi|299115418|emb|CBN75583.1| riboflavin biosynthesis protein [Ectocarpus siliculosus]
Length = 541
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
D M AL + +G T NP+V C+I+ K+G V+G G G PHAEV A+ +A
Sbjct: 68 EVDGAHMRRALELAAKGLGHTRPNPAVGCVILDKEGSVVGEGFHPRAGEPHAEVWAIRQA 127
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARG TAYV+LEPC+H+GR+PPC ++ECG+ RVV + DPD R +G GL+ L+ G
Sbjct: 128 GERARGGTAYVSLEPCNHFGRTPPCTTALLECGVARVVAGMVDPDPRTAGSGLRRLADAG 187
Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVS 159
I V +E L++ ++ R K + L +
Sbjct: 188 IDVSVGVEGAACHALNSAFVHRVSHKSCYGVLHCCLD 224
>gi|227503568|ref|ZP_03933617.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium accolens ATCC 49725]
gi|227075604|gb|EEI13567.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium accolens ATCC 49725]
Length = 344
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 108/355 (30%), Positives = 150/355 (42%), Gaps = 31/355 (8%)
Query: 14 ALRFSRWH----VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68
AL + G TS NP V +I+ G V+G G T G HAEV AL AGE+AR
Sbjct: 13 ALLQAMQAGAAVRGTTSPNPPVGAVILSATGAVVGIGATQPVGGAHAEVMALRAAGEKAR 72
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
G TA VTLEPC+H GR+ PCA +I+ GI RV DP + G + +
Sbjct: 73 GGTAVVTLEPCAHTGRTGPCATALIDAGIARVFYLHPDPTPQAGGGAQALAAAGVEVGRL 132
Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+ + A+L +R H+TLK A + D A S ITG ++ VH RA
Sbjct: 133 TAPDGVEDAVRAWLRAVKLQRPHVTLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRA 192
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ DAI++G GT LAD+P LT R D + +++
Sbjct: 193 RRDAIIIGTGTALADNPSLTAR------------FSDGSLRE----------HQPRRVVI 230
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ D L L G +LVEGGA +A FI +
Sbjct: 231 GKRDLQAAGEKASHLQQLGFEQYDTIEGAL-KELYASGARDVLVEGGAGLAQGFIEAGAA 289
Query: 309 DSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
D++ Y + I++G+G + +F VR G DV +EY +N
Sbjct: 290 DALAAYIAPILLGQGRGVLANAVAHTLADAPHFTTVRTTSLGPDVLIEYEARNER 344
>gi|118462896|ref|YP_882551.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
gi|118164183|gb|ABK65080.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
Length = 341
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 34/355 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
M A+ S G T NP V +++ + T G HAE+ AL AG+ A G
Sbjct: 13 MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G G L + G+ V
Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131
Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +L +Q H+T K A S D A S I+ S+ +H R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVI 246
A +DAI+VG GTVLADDP LT RL + + + ++K++ VI
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREIPSEAKVLNDDSRTMVI 251
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + + A++ R T +L+EGG +A +F+ +
Sbjct: 252 RTHDPAEVLKAVSDR--------------------------TDVLLEGGPTLAGAFVRAG 285
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
LV+ I++Y + ++G + + D G D+ L + ++
Sbjct: 286 LVNRILVYLAPTLLGGPVTAVDDVGVPTIAKALRWQFDGVDRVGPDLLLSLVPRS 340
>gi|254775815|ref|ZP_05217331.1| riboflavin biosynthesis protein RibD [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 341
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 98/359 (27%), Positives = 159/359 (44%), Gaps = 42/359 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
M A+ S G T NP V +++ + T G HAE+ AL AG+ A G
Sbjct: 13 MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC+H+G++PPC ++E G+ VV + DP+ + +G G L + G+ V
Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAIADPNPQAAG-GAGRLQEAGVTVRSG 131
Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +L +Q H+T K A S D A S I+ +S+ +H R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEVSRLDLHRRR 191
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVI 246
A +DAI+VG GTVLADDP LT RL + + + ++K++ VI
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREIPSEAKVLNDDSRTMVI 251
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + + A++ R T +L+EGG +A +F+ +
Sbjct: 252 RTHDPAEVLKAVSDR--------------------------TDVLLEGGPTLAGAFVRAG 285
Query: 307 LVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
LV+ I++Y + ++G G+P+ + D G D+ L + ++
Sbjct: 286 LVNRILVYLAPTLLGGPVTAVDDVGVPAI----AKALRWQFDGVDRVGPDLLLSLVPRS 340
>gi|87200870|ref|YP_498127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Novosphingobium aromaticivorans DSM 12444]
gi|87136551|gb|ABD27293.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium
aromaticivorans DSM 12444]
Length = 323
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 121/361 (33%), Positives = 170/361 (47%), Gaps = 45/361 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D R++ AA L+ NP+V +IV DG+V+GRG T GG PHAE AL
Sbjct: 1 MS-AADDLRWLDAAASLGARGRPLSRPNPAVGAVIVNDGVVVGRGWTQAGGRPHAEAGAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG+ A+GAT YVTLEPC+H P C +++ G+ RVV+ ++DPD R +G G+ L
Sbjct: 60 MAAGDAAQGATLYVTLEPCAHASERGPSCTSLVLKSGLARVVIGIEDPDPRTAGGGIAAL 119
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
GI D + + + L YL R R H+TLK+A S D I +A S ITG +
Sbjct: 120 RSAGIAADVVPSAAARASLVGYLVRTATGRPHVTLKLATSLDGRIALADGTSKWITGPEA 179
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H+ RA++DAILVG GT+ AD P L RL GL+ SP R++L
Sbjct: 180 RAHCHVERARADAILVGGGTLRADAPRLDVRLPGLEARSPKRMVLTRGIAPDGW------ 233
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + L VEGGA A
Sbjct: 234 ---------------------------------TGVADIAATGAFGDAQYLFVEGGAGAA 260
Query: 300 HSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+F+ + +VD +++YR+ +VIG+G G G + V R GSD Y
Sbjct: 261 AAFLAADMVDRLLIYRAPVVIGQGLPCIGDIGLGSLGEAHGRWRNVDRRTLGSDNLDVYE 320
Query: 356 G 356
Sbjct: 321 R 321
>gi|222624084|gb|EEE58216.1| hypothetical protein OsJ_09181 [Oryza sativa Japonica Group]
Length = 396
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 16/355 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A
Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I V ++ E + + + +
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGV--VINQIGSGADQPEGYY 225
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
L + D +++ + ++ Q + + K + A
Sbjct: 226 SQLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQCENSQLNIPFLKEERAAEAV 285
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGA---A 297
+ + ++++ D +L +L +L RG+ S+LV E G +
Sbjct: 286 VL--------SDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGGIAS 337
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++F + +LV +++ + G G V V L
Sbjct: 338 LLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLL 392
>gi|115450331|ref|NP_001048766.1| Os03g0117200 [Oryza sativa Japonica Group]
gi|108705865|gb|ABF93660.1| riboflavin biosynthesis protein RibD containing protein, expressed
[Oryza sativa Japonica Group]
gi|113547237|dbj|BAF10680.1| Os03g0117200 [Oryza sativa Japonica Group]
gi|215687333|dbj|BAG91867.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 423
Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats.
Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 16/355 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A
Sbjct: 75 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 134
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G
Sbjct: 135 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 194
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I V ++ E + + + +
Sbjct: 195 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGV--VINQIGSGADQPEGYY 252
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
L + D +++ + ++ Q + + K + A
Sbjct: 253 SQLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQCENSQLNIPFLKEERAAEAV 312
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGA---A 297
+ + ++++ D +L +L +L RG+ S+LV E G +
Sbjct: 313 VL--------SDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGGIAS 364
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++F + +LV +++ + G G V V L
Sbjct: 365 LLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLL 419
>gi|302773850|ref|XP_002970342.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
gi|300161858|gb|EFJ28472.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii]
Length = 378
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 88/363 (24%), Positives = 159/363 (43%), Gaps = 22/363 (6%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG
Sbjct: 27 DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 86
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+
Sbjct: 87 SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 146
Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
V +E E ++ A+ R V K+ L+ A++ D + + ++ +
Sbjct: 147 EVTVGVEEELCRVTNEAFFHRMVTKKPFTCLRYAMTIDGCLLAD------PSTPVAASFY 200
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241
+ DA++ ++ AD L+ Q + + L S +
Sbjct: 201 SQQLEEYDAVVTTEASLDADPVLLSAEQGAKQPLRVVAVTSSSSLSKLAGLLSARVFDTK 260
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GGAAVA 299
LAP +++ + + + RK + + L + RG S+L++ G +
Sbjct: 261 LAPTLLLGGKGESIETVLRRKNVEVVPVNEVDLDSVL-DLCNQRGACSVLLDSTAGFDML 319
Query: 300 H---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ + ++ + + G + + G +V ++
Sbjct: 320 GVKEALEDEDRAVIQKLCVVVGPFAGGGQSQKI----ASSMRKLGRLTTRKCGENVVIQG 375
Query: 355 IGK 357
+
Sbjct: 376 YFE 378
>gi|20139385|sp|P57533|RIBD1_BUCAI RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
Length = 147
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 55/120 (45%), Positives = 80/120 (66%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+
Sbjct: 3 DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+G TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V
Sbjct: 63 AQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 122
>gi|172040661|ref|YP_001800375.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium urealyticum DSM 7109]
gi|171851965|emb|CAQ04941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium urealyticum DSM 7109]
Length = 357
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 110/351 (31%), Positives = 153/351 (43%), Gaps = 35/351 (9%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71
A G T NP V C+IV G ++GRG T G HAEV AL+ AG A GAT
Sbjct: 21 LADEMGWQAAGSTRPNPPVGCVIVDSAGTILGRGATEPAGGRHAEVVALQAAGARAAGAT 80
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL----SQKGIIVD 127
AY TLEPC+H GR+ PCA+ +I G+ V DP G G + + G ++
Sbjct: 81 AYATLEPCNHTGRTGPCAEALIAAGVAEVHYLFADPGKAEGGGGERLRAAGVTVSGPYLE 140
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
E + + +L R H+TLK A + + M S ITG ++ VH R
Sbjct: 141 PFHLGEHRFSVEPWLRAAYLGRPHVTLKFASTLNGMAAATDRTSQWITGPTARADVHADR 200
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+AILVG GTVLADDP+LT R G++ ++ ++
Sbjct: 201 QYREAILVGTGTVLADDPQLTARPGGVEGPRQPLRFAVGQREIPSSAR------------ 248
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
L + + RDL+ LT L +G++ +LVEGG +A SF+ L
Sbjct: 249 ---------LLQPGAHALAGQHLPTRDLEAALTTLRRQGISDVLVEGGPELAGSFLAHGL 299
Query: 308 VDSIILYRSQIV-------IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
VD I Y + +G+GGI S + F G D+
Sbjct: 300 VDEIRAYLAPAWLPRGLPALGDGGIGS--TSITDLQRFATRSVQRIGEDIL 348
>gi|167577925|ref|ZP_02370799.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
TXDOH]
Length = 195
Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats.
Identities = 61/129 (47%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSTFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQALGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARL 120
Query: 120 SQKGIIVDR 128
+ GI+V++
Sbjct: 121 ADAGIVVEQ 129
>gi|83859882|ref|ZP_00953402.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
HTCC2633]
gi|83852241|gb|EAP90095.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
HTCC2633]
Length = 195
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/125 (52%), Positives = 84/125 (67%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
PV++ D R+M AL + +G T+ NPSV C+IV+DG +IG TA GG PHAE QALE
Sbjct: 5 PVTAEDLRYMDTALALAYARLGQTAPNPSVGCIIVRDGRIIGAAATAPGGRPHAEPQALE 64
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+AG A GAT YVTLEPC+HYG++PPCA+ +I VV+ DP V+GRG+ L+
Sbjct: 65 QAGARAEGATVYVTLEPCAHYGKTPPCAEALIAAHPAEVVIACRDPFEHVAGRGMTMLAD 124
Query: 122 KGIIV 126
GI V
Sbjct: 125 AGIAV 129
>gi|218506245|ref|ZP_03504123.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli Brasil 5]
Length = 137
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 79/126 (62%), Positives = 98/126 (77%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+++G+ VTA GG PHAE QAL
Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVIVGQAVTAIGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120
Query: 121 QKGIIV 126
GI V
Sbjct: 121 DAGIEV 126
>gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
49726]
gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC
49726]
Length = 307
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 100/325 (30%), Positives = 139/325 (42%), Gaps = 26/325 (8%)
Query: 39 GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
G V+G G T G HAEV AL AGE+ARG TA VTLEPC+H GR+ PCA +I+ GI
Sbjct: 6 GAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAHTGRTGPCATALIDAGIA 65
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
RV D + G + + + + A+L +R H+TLK A
Sbjct: 66 RVFYLHPDSTPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRAWLRAVKLQRPHVTLKFAQ 125
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
+ D A S ITG ++ VH RA+ DAI++G GT LAD+P LT R
Sbjct: 126 TLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTALADNPSLTAR-------- 177
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
D + +++ + D L
Sbjct: 178 ----FSDGSLRE----------HQPRRVVIGKRDLQAAGEKASHLQRLGFEQYDTIEGAL 223
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLE 335
L G +LVEGGA +A SFI + VD++ Y + I++G+G +
Sbjct: 224 -KELYASGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLGQGRGVLANAVAHTLADA 282
Query: 336 KNFMCVRRDYFGSDVCLEYIGKNLC 360
+F VR G DV +EY +N
Sbjct: 283 PHFTTVRTTSLGPDVLIEYEARNER 307
>gi|218514099|ref|ZP_03510939.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli 8C-3]
Length = 179
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 80/126 (63%), Positives = 98/126 (77%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL
Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120
Query: 121 QKGIIV 126
GI V
Sbjct: 121 DAGIEV 126
>gi|163841087|ref|YP_001625492.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
33209]
gi|162954563|gb|ABY24078.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC
33209]
Length = 369
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 95/347 (27%), Positives = 148/347 (42%), Gaps = 34/347 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D M AL + G+ NP V +I+ DG ++ G A G PHAE AL +
Sbjct: 2 NHDEA-MDLALATAIK--GIRGANPLVGAVILGADGELLAAGHHAGAGTPHAEALALAQL 58
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
++ GAT TLEPCSH GR+P C+Q II+ GI VV DDPD +G + +
Sbjct: 59 EPSQSAGATLVCTLEPCSHVGRTPACSQAIIDAGITTVVYAADDPDQNAAGGAARLRAAG 118
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
++ + +EG + + R + ++ I + D I S I+ S
Sbjct: 119 ITVISDVRAAEGHELNRRWFAAVRDSRPYTSVHIMQTIDGRIAAVDGSSQWISCPESLAA 178
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
H R ++ A+LVG GT+LAD+P LT R Q + + + +
Sbjct: 179 KHARRTRAHAMLVGTGTILADNPRLTARDPDGQLFARQPLRVALGNREVPA--------- 229
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
A + + + D K L +GV L+VEGGA V +F
Sbjct: 230 ---------------DAAIRGDGRWLQVKDHDALKAGRTLRAQGVDHLIVEGGAQVTAAF 274
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + LVD +I+ + V+G G + + + + +FG D
Sbjct: 275 LRADLVDELIVSIAPTVLGSG--ITAIGDIGV---LTLADARHFGWD 316
>gi|295395079|ref|ZP_06805288.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972027|gb|EFG47893.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
ATCC 49030]
Length = 336
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 104/365 (28%), Positives = 143/365 (39%), Gaps = 51/365 (13%)
Query: 13 AALRFSRWH------VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
AL + G+ NP V ++ D G G PHAE A+ A
Sbjct: 2 EALHSATRAALGAATRGVRGANPLVGAAVLWDDGTFTTGYHQGAGTPHAEPDAIRNASPR 61
Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
GAT VTLEPCSH GR+ PC Q II+ GI RVV+ DP+ + SG G Q L++ G+
Sbjct: 62 STTGATLVVTLEPCSHTGRTGPCTQAIIDAGITRVVIASRDPNPQASG-GAQTLTEAGVE 120
Query: 126 VDRMMESEGKIFLH----------AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
V + + + T R IT KIA S D + S IT
Sbjct: 121 VLFLNDLGQSWAHEVATQAHRLNARWFTAVTHDRPFITAKIAQSLDGCVAARDRTSQWIT 180
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
G S+ HL RA+ DAI VG GT AD+P LT R +
Sbjct: 181 GAESRAHAHLTRARVDAIAVGTGTAHADNPRLTARTGDSPHQPIPVVFGTTAL------- 233
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
N ++ L L RGV+ LL+EGG
Sbjct: 234 ----------------------PGDSHLGRNPRTLTYSEVGAGLRDLRRRGVSHLLLEGG 271
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCL 352
+ F+ LVD + +Y + +++G GI +PL L + V + GSD
Sbjct: 272 PTLMAHFLQHDLVDELHVYTAPLLLG-DGIRAPLSVDTLAQGLRFVPDAPPEALGSDTFT 330
Query: 353 EYIGK 357
++ +
Sbjct: 331 RFMKE 335
>gi|218191968|gb|EEC74395.1| hypothetical protein OsI_09744 [Oryza sativa Indica Group]
Length = 396
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 81/355 (22%), Positives = 133/355 (37%), Gaps = 16/355 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A
Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G
Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
I V ++ E + +
Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGV-VINQIGSGADQPEGYYS 226
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
LL+ I+ P + + + + L
Sbjct: 227 QLLKEYDGVIISSNFAKTNTLPVSREAGAKQPLYIIIAQGENSQLNIP---------FLK 277
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGA---A 297
+ ++++ D +L +L +L RG+ S+LV E G +
Sbjct: 278 EERAAEAVVLSDSPITVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGGIAS 337
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++F + +LV +++ + G G V V L
Sbjct: 338 LLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGCVLL 392
>gi|289705541|ref|ZP_06501933.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
gi|289557770|gb|EFD51069.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58]
Length = 377
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 140/366 (38%), Gaps = 38/366 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE------- 62
M A+R + G+ NP V ++ + G V+ G G HAEV AL
Sbjct: 12 MDLAVRAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALTRWRAARAA 69
Query: 63 ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A + G T +VTLEPC H G + PC+Q +++ GI + V DP G +
Sbjct: 70 DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTGHDGGGAARL 129
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ + E+ + + R +T +A S D A S ITG
Sbjct: 130 AAHGVRVTGPTGEAAALALSARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSRWITGPD 189
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ H +R++ DAI+VG GTVLADDP LT R E + + + + D ++
Sbjct: 190 SRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVVQGHRPVPDGVALR 249
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ + + + ALA +L+EGG V
Sbjct: 250 RHPVVLEVPDHDPHAVLAALAAHPGPWPHGRRAE----------------HVLIEGGPRV 293
Query: 299 AHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVR-------RDYFGSDV 350
+++ + LVD +++Y + +++G + L L + G DV
Sbjct: 294 LGAWLRAGLVDELMVYTAPLLLGPGRAAVAGLGVATLSEGLRWHSDPAEGGPVRVLGDDV 353
Query: 351 CLEYIG 356
Sbjct: 354 WTHLSP 359
>gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 89/366 (24%), Positives = 158/366 (43%), Gaps = 20/366 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+ M A+ + GLT+ +P C+I + ++G G G AEVQA+EEA E+
Sbjct: 1 DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGARSAEVQAVEEAREQ 60
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
ARGATA+++LEP G +++ G+ RVVV + P G+ + L + G+ V
Sbjct: 61 ARGATAFLSLEPG-DCGGDDAAIAALVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119
Query: 127 DRMMESE------------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ E + L R TLK A++ D I + S +
Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLDGKIAASSGHSAWV 179
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234
+ +S+++V RAQSDA++VG TV D+P LT R H P RI++ L D+
Sbjct: 180 SSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTR--LEGGHQPDRIVMSRALDLPRDA 237
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + +++ + + + + ++ D + ++ RG S+L E
Sbjct: 238 NLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYMRGYLSVLWEC 297
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSD 349
G ++ I +V ++ + + ++G +P+ E V + G D
Sbjct: 298 GGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKLSDVAFEQTGPD 357
Query: 350 VCLEYI 355
+ +
Sbjct: 358 MLVTGY 363
>gi|240172784|ref|ZP_04751443.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
kansasii ATCC 12478]
Length = 339
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 102/354 (28%), Positives = 151/354 (42%), Gaps = 34/354 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ S G T NP V +IV +G V+G G T G HAEV AL AG A G
Sbjct: 13 MRLAIDQSYLVKGSTYPNPPVGAVIVDTEGRVVGVGGTQPTGGDHAEVVALRRAGGLAAG 72
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
A A VT+EPC+HYG++PPC +IE + V+ V DP ++G G LS G+ V
Sbjct: 73 AIAVVTMEPCNHYGKTPPCVNALIEARVGTVIYGVADP-NGIAGGGAGRLSAAGVQVRSG 131
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + L +L +Q H+T K A S D A S I+ ++ +H R
Sbjct: 132 VLADHVAAGPLREWLHKQRTGLPHVTWKYATSVDGRSAAADGSSQWISSEAARADLHRRR 191
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVI 246
A +DAI+VG GTVLADDP LT RL ++ + ++K++ V+
Sbjct: 192 AIADAIVVGTGTVLADDPALTARLPDGSLAPKQPLRVVVGTRDIPPEAKVLNDDARTMVL 251
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
E + + T +L+EGG VA +F+
Sbjct: 252 RTHEP--------------------------VEVLRALLDYTDVLLEGGPTVAGAFLRCG 285
Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ I+ Y + I++G + + + G D+ L I +
Sbjct: 286 AISRILAYVAPILLGGPVTAVDDVGVSSIAHALRWQFDSVEKVGPDLLLSLIPR 339
>gi|169629892|ref|YP_001703541.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium
abscessus ATCC 19977]
gi|169241859|emb|CAM62887.1| Probable bifunctional riboflavin biosynthesis protein RibG
[Mycobacterium abscessus]
Length = 340
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 107/359 (29%), Positives = 157/359 (43%), Gaps = 35/359 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64
D M A+R + G T NP V +I+ G V G G T G HAEV AL AG
Sbjct: 7 LDEA-MDLAIRAAEEVKGSTYPNPPVGAVILDAAGQVAGVGGTRPPGQEHAEVVALAGAG 65
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
ARG TA VTLEPC+H GR+ PC + G+ RVV V DP+ + +G G L GI
Sbjct: 66 AAARGGTAVVTLEPCNHQGRTGPCVDALAAAGVSRVVYAVADPNPQAAG-GAARLRTLGI 124
Query: 125 IVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
V + L +L +Q R H+T K S D S IT S+
Sbjct: 125 EVLDGLASDRVSAGPLREWLHKQRTGRPHVTWKYGASVDGRSAANDGTSQWITSEQSRAD 184
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
VH RA +DA+LVG GTV ADDP+LT R + ++ ++
Sbjct: 185 VHRRRAFADAVLVGTGTVFADDPQLTARTPDNE------LVPHQPLRV------------ 226
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V + + + + D ++L L R T +++EGG +A +F
Sbjct: 227 -----VVGMREVSSDAKVLNDDSHTMVIRTHDPAEVLAALGDR--TDIILEGGPTLAGAF 279
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ + LVD I+ Y + +++G +P+ + + + + G DV L + +
Sbjct: 280 LRAGLVDRILAYLAPMLLGGN-VPAVEDVGVTTLSRALRWEYDQIERMGPDVLLSLVPR 337
>gi|288926889|ref|ZP_06420789.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
gi|288336328|gb|EFC74709.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17]
Length = 286
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 7/220 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +FM L+ +R NP V +IV DG +IG G G HAEV A
Sbjct: 26 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVRP 85
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + +
Sbjct: 86 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 145
Query: 122 KGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
GI V + E E ++ R +ITLK A + D + ++PI+ +K
Sbjct: 146 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDD-HGRALPISSPFTK 204
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
H LRA++DAILVG T + P L R + +
Sbjct: 205 MLSHKLRAENDAILVGRVTEEREHPRLDVREWSGPDPERI 244
>gi|41407234|ref|NP_960070.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395585|gb|AAS03453.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 341
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 96/354 (27%), Positives = 150/354 (42%), Gaps = 32/354 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69
M A+ S G T NP V +++ + T G HAE+ AL AG+ A G
Sbjct: 13 MHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G G L + G+ V
Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131
Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +L +Q H+T K A S D A S I+ S+ +H R
Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
A +DAI+VG GTVLADDP LT RL + + + L +
Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILSEAKVLNEESRT--- 248
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ D ++L + R T +L+EGG +A +F+ + L
Sbjct: 249 --------------------MVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRAGL 286
Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
V+ I++Y + ++G + + D G D+ L + ++
Sbjct: 287 VNRILVYLAPTLLGGPVTAVDDVGVPTIAKALRWQFDGVDRVGPDLLLSLVPRS 340
>gi|301055607|ref|YP_003793818.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
[Bacillus anthracis CI]
gi|300377776|gb|ADK06680.1| riboflavin biosynthesis protein contains N-terminal domain of RibD
[Bacillus cereus biovar anthracis str. CI]
Length = 166
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/120 (45%), Positives = 77/120 (64%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++
Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V
Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122
>gi|218662593|ref|ZP_03518523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli IE4771]
Length = 287
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 146/247 (59%), Positives = 183/247 (74%), Gaps = 1/247 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL
Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EAGE ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L
Sbjct: 61 AEAGEAARGATAYVTLEPCSHHGKTPPCAEALIAHGVARVVISVTDPDPRVSGRGIAMLR 120
Query: 121 QKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ GI VD + E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG +
Sbjct: 121 EAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T
Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240
Query: 240 ALLAPVI 246
A PVI
Sbjct: 241 ARDVPVI 247
>gi|213027853|ref|ZP_03342300.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 320
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 104/320 (32%), Positives = 149/320 (46%), Gaps = 18/320 (5%)
Query: 52 CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
HAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V
Sbjct: 1 GAHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQV 60
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCG 170
+GRGL L Q GI V + L+ R ++ LK+ S D MA
Sbjct: 61 AGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGE 120
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSP 219
S IT ++ V LRAQS AIL TVLADDP LT R P
Sbjct: 121 SQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQP 180
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
+RI++D +++ +I++ I +D + + DL L+
Sbjct: 181 VRIVIDSQNRVTPAHRIVQQPGE--TWIARTQEDSHAWPDSVRTISVPAHNGHLDLVVLM 238
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLE 335
L + + S+ VE G +A + + + LVD +I+Y + ++G LE+
Sbjct: 239 MQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADA 298
Query: 336 KNFMCVRRDYFGSDVCLEYI 355
F + G DVCL +
Sbjct: 299 PQFTFSEIRHVGPDVCLHMV 318
>gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1]
gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Halorhodospira halophila SL1]
Length = 371
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 103/341 (30%), Positives = 156/341 (45%), Gaps = 11/341 (3%)
Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
NP V C++V+DG V+ G PHAE AL+ AG A GATAYVTLEPC+HYGR+
Sbjct: 29 HPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLEPCAHYGRT 88
Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL-TR 144
PPCA+ +I+ G+ RVVV DP+ RV+G G+ L G+ V + + L+ R
Sbjct: 89 PPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRR 148
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R + +K+A S D MA S IT ++ VH RA++ A+L G+GTV ADD
Sbjct: 149 MAGGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADD 208
Query: 205 PELTCRLNG---LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
P L R E P R++LDP + + + + ++
Sbjct: 209 PRLDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQAPGPVLIGHAEYVNEARARALRS 268
Query: 262 KKN---INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ DL +L L R + + VE G +A S++ D +I+Y +
Sbjct: 269 CGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADELIVYTAPH 328
Query: 319 VIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
++G+ P +E + G ++ +
Sbjct: 329 LMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIRITAR 369
>gi|255325997|ref|ZP_05367085.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
25296]
gi|255296888|gb|EET76217.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC
25296]
Length = 436
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 91/361 (25%), Positives = 142/361 (39%), Gaps = 32/361 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A G +
Sbjct: 64 MTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAAGTD 121
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GA YV+LEPC+H GR+ PC+ + E GI + D + G +L +G+ V
Sbjct: 122 LTGARMYVSLEPCNHTGRTGPCSHAVAEAGINELYYAYSDDTE-NAAGGAAYLRSQGVTV 180
Query: 127 DRMMESEGKIFLHAYLTRQV--EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
M E +L E+R IT K A + D I A S ITG ++ H
Sbjct: 181 HAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARIDGH 240
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L+R ++DA+++G T L DDP L D + + +
Sbjct: 241 LIRHRADAVMIGTRTTLMDDPTLD--------------ARDANGERFEKQPLRVVMGKTE 286
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ N + D ++LL L RGV L++EGG + F
Sbjct: 287 ITENYRVRGLNPPEGVEADPQNFLQVFTHDPRELLDELYARGVRHLMIEGGPGMVGLFAG 346
Query: 305 SRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVR------RDYFGSDVCLEYI 355
L+D ++ YR+ +++G+G ++ G+D +
Sbjct: 347 EDLIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRVLGNDTATHLV 406
Query: 356 G 356
Sbjct: 407 P 407
>gi|3378525|emb|CAA08869.1| riboflavin-specific deaminase [Thermotoga neapolitana]
Length = 241
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQALEEA--- 63
RFM A+ ++ +G + NP V ++VK+G +I G PHAE A+E A
Sbjct: 3 ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRK 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE+ G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ +
Sbjct: 63 GEDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNPVSGSGVEKLKKHGI 122
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
+V+ ++E E K ++T E R I LK A + D I A S IT +++
Sbjct: 123 EVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQ-DLRHKA 181
Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR 210
H +R A+LVG TVL DDP LTCR
Sbjct: 182 HEMRNVYSAVLVGARTVLKDDPRLTCR 208
>gi|324999324|ref|ZP_08120436.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudonocardia sp. P1]
Length = 368
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 109/352 (30%), Positives = 160/352 (45%), Gaps = 27/352 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M AL S G TS NP+V C+++ + G V+G G T G PHAE AL EAG+ A G
Sbjct: 32 MRRALAASDLVHGTTSPNPAVGCVVLDRAGAVVGTGATTPPGGPHAERVALAEAGDRAAG 91
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+PPC ++E GI RV + DP+ V+ GL L GI V
Sbjct: 92 GTAVVTLEPCNHSGRTPPCVDGLLEAGIARVYAALADPNP-VAAGGLDRLRAAGIEVTLG 150
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
G+ L +L RQ R H+T K+A + D + A S ITG ++ +VH LR
Sbjct: 151 TLAGEVGRGPLRGWLHRQHTGRPHVTWKVATTLDGRVAAADGTSRWITGPEARGEVHDLR 210
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ DAI+ G GTVL DDP LT R + + + +
Sbjct: 211 RRMDAIVAGTGTVLDDDPALTARRPDGTLFDHQPLRVVVGHRDVPPGARLSNRAAG---- 266
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+++ RD ++L LV R +L+EGG +A +F+ +
Sbjct: 267 ----------------EAEVVHLRTRDPGEVLAELVRRDTVDVLLEGGPTLAGAFVAAGA 310
Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
VD ++++ + ++G G + + G DV ++
Sbjct: 311 VDRVLVHLAPALLGAGPHALGDAGVGTIADIVRLQVDEVRRSGGDVVIDGRP 362
>gi|15617059|ref|NP_240272.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219681811|ref|YP_002468197.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|257471513|ref|ZP_05635512.1| riboflavin deaminase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|25403627|pir||F84983 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
[imported] - Buchnera sp. (strain APS)
gi|10039124|dbj|BAB13158.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219624654|gb|ACL30809.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
Length = 141
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/116 (46%), Positives = 78/116 (67%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G
Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEKAQGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V
Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 116
>gi|219682366|ref|YP_002468750.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219622099|gb|ACL30255.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|311086187|gb|ADP66269.1| riboflavin deaminase [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086763|gb|ADP66844.1| riboflavin deaminase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087351|gb|ADP67431.1| riboflavin deaminase [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|311087851|gb|ADP67930.1| riboflavin deaminase [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 141
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/116 (46%), Positives = 78/116 (67%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G
Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHKQAGKNHAEINALIMAGEKAQGG 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V
Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 116
>gi|300781124|ref|ZP_07090978.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
ATCC 33030]
gi|300532831|gb|EFK53892.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
ATCC 33030]
Length = 361
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 96/377 (25%), Positives = 145/377 (38%), Gaps = 53/377 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVAC--------LIVKD-----GIVIGRGVTA 48
+ + + AL G TS NP V C +IV D +I G T
Sbjct: 7 TFTEQEETALWEALDAGAEVRGTTSPNPPVGCVIYREVEPVIVDDWDQAEPEIIATGGTE 66
Query: 49 YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
G HAE+ AL+ A E+ RGA VTLEPC+H GR+ PCA+ I+ GI +VV
Sbjct: 67 PAGGRHAEIVALDAAREKVGDDGLRGACMLVTLEPCNHTGRTGPCAEAIVAAGIAKVVYI 126
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
DP+ + G ++L + G+ V L +LT R +T K A + D
Sbjct: 127 EPDPNP-EASGGAEYLRRHGVEVHHKTYDVT--GLAPWLTAVRHGRVSVTAKFAATLDGF 183
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
+ S ITG I++ VH R++ DAI++G GT LAD+P LT R
Sbjct: 184 VAAPDGSSQWITGPITREWVHEDRSRVDAIIIGTGTALADNPSLTARKADGSLAERQPRR 243
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + + + + ++ L L
Sbjct: 244 VVVGTREVPEGNLTRLGFER----------------------------YATPQEALDALW 275
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMC 340
G ++VEGG + S +VD+I Y + ++ G G + + +
Sbjct: 276 ETGARHVIVEGGPTLMRSVFELGVVDAIHAYVAPMLFGAGRSMIDGPLVGTLAQAQRYEI 335
Query: 341 VRRDYF-GSDVCLEYIG 356
DY DV +
Sbjct: 336 DYVDYTSNDDVLIALRR 352
>gi|283458202|ref|YP_003362820.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
DY-18]
gi|283134235|dbj|BAI65000.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa
DY-18]
Length = 436
Score = 130 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 140/361 (38%), Gaps = 32/361 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66
M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A G +
Sbjct: 64 MTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAAGTD 121
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GA YV+LEPC+H GR+ PC+ + E GI + D + G +L +G+ V
Sbjct: 122 LTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSDDTE-NAAGGAAYLRSQGVTV 180
Query: 127 DRMMESEGKIFLHAYLTRQV--EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
M E + E+R IT K A + D I A S ITG ++ H
Sbjct: 181 HAMEEFANASYQLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARIDGH 240
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L+R ++DA+++G T L DDP L D + + +
Sbjct: 241 LIRHRADAVMIGTRTTLMDDPTLD--------------ARDANGERFEKQPLRVVMGKTE 286
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ N + D ++LL L RGV L++EGG + F
Sbjct: 287 ITENYRVRGLNPPEGVEADPQNFLQVFTHDPRELLDELYARGVRHLMIEGGPGMVGLFAG 346
Query: 305 SRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVR------RDYFGSDVCLEYI 355
+D ++ YR+ +++G+G ++ G+D +
Sbjct: 347 EDFIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRVLGNDTATHLV 406
Query: 356 G 356
Sbjct: 407 P 407
>gi|297182203|gb|ADI18374.1| pyrimidine deaminase [uncultured actinobacterium HF4000_04C13]
Length = 338
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 112/338 (33%), Positives = 151/338 (44%), Gaps = 35/338 (10%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
TS NP V ++V DG ++G G T G HAE AL EAG A GAT Y TLEPC H G
Sbjct: 26 RTSPNPRVGAVVVVDGRMVGSGATQPPGGAHAERVALAEAGPAAAGATLYTTLEPCDHEG 85
Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYL 142
R+ PC II G+ RVVV + DPD VSGRG+ L + G+ VD + E E L YL
Sbjct: 86 RTAPCTDAIIGAGVARVVVGIGDPDPEVSGRGIGRLREAGLDVDVGVLEDEVSDTLAPYL 145
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+ R ++ LK+A + D I S ITG ++ VH LRA DAI VG GT+ A
Sbjct: 146 HHRRTGRPYVVLKLAATLDGRIAAPDGTSRWITGSEARLDVHRLRASCDAICVGAGTIRA 205
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
DDP L R + ++ ++++
Sbjct: 206 DDPRLDVRDADGEVEGGDPPRRVVLGEIPAGARVLPA----------------------- 242
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
L+ LL L GV LLVEGGA VA F + LVD ++Y + ++G
Sbjct: 243 ------DEYHGGLEGLLDGLGADGVLKLLVEGGADVAGRFHRAGLVDRYVVYLAPALLGG 296
Query: 323 GGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355
+ + V + G D+ L+ +
Sbjct: 297 EDGRPLMAGPGAPTMADLRRGRFVAVEVLGDDLRLDLV 334
>gi|254420634|ref|ZP_05034358.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Brevundimonas sp. BAL3]
gi|196186811|gb|EDX81787.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Brevundimonas sp. BAL3]
Length = 209
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D FM+ A+ + +G T NP+V C+IVKDG +I + TA GG PHAE QA+
Sbjct: 1 MSWTDADRAFMAQAIDLATARMGETWPNPAVGCVIVKDGRIIAQAATAPGGRPHAEEQAV 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG E GAT YVTLEPC CA F+ E G+ RVV+ DP +GRG + L
Sbjct: 61 PAAGAEIEGATVYVTLEPCGARSSGRQSCAHFLTEAGVERVVIACLDPSPFAAGRGTERL 120
Query: 120 SQKGIIVDRMMES 132
KG+ V+ +
Sbjct: 121 RAKGLTVETGLMC 133
>gi|119384080|ref|YP_915136.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans
PD1222]
gi|119373847|gb|ABL69440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Paracoccus
denitrificans PD1222]
Length = 219
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/116 (54%), Positives = 70/116 (60%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +R G NP V C+IVKDG +I G T GG PHAE AL AG ARGA
Sbjct: 1 MGRALALARRMRGHVWPNPPVGCVIVKDGTIIAEGETQPGGRPHAERLALNRAGAAARGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
T YVTLEPC H+GR+PPCA II G+ RVV + DPD RV G G L GI V
Sbjct: 61 TLYVTLEPCCHWGRTPPCADAIIAAGVTRVVAAMQDPDPRVDGGGFARLRAAGIEV 116
>gi|218888179|ref|YP_002437500.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759133|gb|ACL10032.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 419
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
FM A+ +R + NP+V ++V+DG V+ RG G PHAEV+ L +A G
Sbjct: 8 EIFMREAIALARRGRWRAAPNPTVGAVLVRDGQVVARGYHTACGMPHAEVECLRDAAANG 67
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ T VTLEPC+H+G++PPC+Q ++ GIR VVV + DP+ V+ G ++L Q G+
Sbjct: 68 VDPAACTLMVTLEPCNHHGKTPPCSQAVLAAGIRHVVVGMADPNP-VARGGAEFLRQHGV 126
Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
VD + E + + + ++T + ++ LK+A + D I S I+ S+ +V
Sbjct: 127 RVDMGVCEQDCRDLVADFVTWKKTDLPYVILKLASTLDGRIATRAGHSQWISCAASRRRV 186
Query: 184 HLLR 187
H +R
Sbjct: 187 HAIR 190
>gi|126730233|ref|ZP_01746044.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
gi|126708966|gb|EBA08021.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
Length = 89
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 63/88 (71%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+++ DARFM+ AL R +G T NP+V CLIV+ G V+GRG T G PHAE QAL
Sbjct: 1 MTASDARFMAQALALGRRGMGQTWPNPAVGCLIVRKGRVVGRGWTQPSGRPHAETQALAM 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQ 90
AG+ ARGAT YVTLEPC+H+G++PPC
Sbjct: 61 AGDAARGATVYVTLEPCAHHGKTPPCTD 88
>gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 429
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 91/381 (23%), Positives = 147/381 (38%), Gaps = 27/381 (7%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA-- 59
V+ DA M+ +R G+ + +P AC + + DG V+ A G AE+
Sbjct: 51 VTPRDAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACAD 110
Query: 60 -LEEAGEEARGA---TAYVTLEP-CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ G + T YV LEP + + G R VV + P + GR
Sbjct: 111 EMRRRGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLRGR 170
Query: 115 GLQWLSQKGIIVD----------RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164
++ L ++GI V + A L R K A++ D I
Sbjct: 171 AVRALRERGIEVCVLEGEAEGFEGEAARACRETNEALLYRVATGLPFSVYKYAMTLDGKI 230
Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
S +TG ++ V R ++DA++VG GTV D+P LTCR P R++L
Sbjct: 231 ATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCR--EETGFQPARVVL 288
Query: 225 DPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
L D+K+ +AP I T+ P A R K + ++ D +
Sbjct: 289 TRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELTPLAAAQYMF 348
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPSPLEEGYLE-----KN 337
RG E G +A + S + ++ + + ++G G P+PL +E
Sbjct: 349 KRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLGIEAMHDALP 408
Query: 338 FMCVRRDYFGSDVCLEYIGKN 358
VR + +G D+ + N
Sbjct: 409 LSGVRLEIYGRDILIRGYVPN 429
>gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 602
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 87/385 (22%), Positives = 151/385 (39%), Gaps = 58/385 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSV-------------------ACLIVKDGIVIGRGVT 47
D+R + A+ ++ GLT+ +P
Sbjct: 19 DSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTGGLSGLGA-------------- 64
Query: 48 AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
P AEVQA+EEAGE ARGATA++ LEP G ++ G+ R+VV + P
Sbjct: 65 ----RP-AEVQAVEEAGEYARGATAFLNLEPG-DCGGDDAAVAALVRGGLERIVVGMRHP 118
Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESE------------GKIFLHAYLTRQVEKRSHITLK 155
G+ + L G+ VD E ++ L R TLK
Sbjct: 119 LPHFRGKAIAALQSAGVKVDVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLK 178
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
A++ D I + S ++ S+ +V RAQ DA++VG TV +D+P LT R G
Sbjct: 179 YAMTLDGKIAASSGHSAWVSSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAG-- 236
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
H P RI++ L ++ + T+ +++ + + + + ++ D
Sbjct: 237 GHQPDRIVITRTMNLPREANLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISP 296
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
+ ++ RG S+L E G ++ I ++ ++ + + V+G P+P+ E
Sbjct: 297 RAVMEHCYSRGYLSVLWECGGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVGELGFV 356
Query: 335 ----EKNFMCVRRDYFGSDVCLEYI 355
V + G D+ +
Sbjct: 357 QMTQALKLSDVSFELTGPDMLVTGY 381
>gi|213416666|ref|ZP_03349810.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 141
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 60/127 (47%), Positives = 81/127 (63%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121
Query: 126 VDRMMES 132
V +
Sbjct: 122 VSHGLMM 128
>gi|149909528|ref|ZP_01898182.1| putative riboflavin deaminase [Moritella sp. PE36]
gi|149807433|gb|EDM67384.1| putative riboflavin deaminase [Moritella sp. PE36]
Length = 144
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 55/126 (43%), Positives = 69/126 (54%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +FM AL S+ + NP V C++VKD I++ G T G HAE QA+ G
Sbjct: 6 DEKFMLRALELSKLALPNCRPNPPVGCVLVKDNIIVSEGYTQAPGQHHAEAQAIANYGAA 65
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA + I+RVVV DPD R SG+GL L GI V
Sbjct: 66 LNDITAYVTLEPCSFVGRTPSCAHTLAGLNIKRVVVATVDPDPRNSGKGLSVLRNAGIDV 125
Query: 127 DRMMES 132
+ +
Sbjct: 126 EVGVCQ 131
>gi|318081273|ref|ZP_07988605.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF]
Length = 254
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 86/214 (40%), Positives = 109/214 (50%), Gaps = 3/214 (1%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG
Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM- 129
TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+
Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGL 129
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+E E A+LT R H+T K A S D A S IT ++ VH LRA
Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
DA+LVG GT DDP L R + R
Sbjct: 190 CDAVLVGSGTARTDDPHLAVRGIPGGAPAAARRP 223
>gi|167914873|ref|ZP_02501964.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 112]
Length = 112
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQ 111
>gi|308803240|ref|XP_003078933.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
[Ostreococcus tauri]
gi|116057386|emb|CAL51813.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS)
[Ostreococcus tauri]
Length = 207
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALE 61
+ D +M AL + NP V C++V + +V+GRG G PHAEV AL
Sbjct: 56 ARDEEYMRQALEAAASRTAEEVHPNPLVGCVVVDPRADVVVGRGFHPRAGEPHAEVFALR 115
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G++RVVV DPD RVSG G+Q L
Sbjct: 116 AAGELARGATAYVTLEPCNHFGRTPPCARALVDAGVKRVVVGFVDPDPRVSGGGIQTLLD 175
Query: 122 KGIIVDRMM 130
GI V
Sbjct: 176 AGIDVAVGC 184
>gi|330447671|ref|ZP_08311319.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491862|dbj|GAA05816.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 146
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 70/126 (55%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + FM AL S + NP V C++VKDG ++ G T G HAE AL
Sbjct: 1 MSGDHQEQAFMMRALLLSHQALPACRPNPPVGCVLVKDGQIVSEGFTQRPGHHHAEAMAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
GE TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L
Sbjct: 61 ANYGESLDDVTAYVTLEPCSFVGRTPSCAHTLVERGIKKVVVATLDPDTRNSGKGIAVLE 120
Query: 121 QKGIIV 126
Q G+ V
Sbjct: 121 QAGVEV 126
>gi|91792826|ref|YP_562477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
denitrificans OS217]
gi|91714828|gb|ABE54754.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
denitrificans OS217]
Length = 142
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 70/119 (58%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M AL S+ + NP V C++VKDG V+G+G T G HAEV+AL +
Sbjct: 3 EEYMLIALELSKKALPHCLPNPPVGCVLVKDGQVVGQGFTQVIGGNHAEVEALNSYTGDL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
G TAYVTLEPCS GR+P CA + G++ +V+ + DPD R +G+GL L GI V
Sbjct: 63 AGVTAYVTLEPCSFVGRTPACAARLAHSGLKHLVLAMLDPDSRNNGKGLAMLQHAGINV 121
>gi|256372450|ref|YP_003110274.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
DSM 10331]
gi|256009034|gb|ACU54601.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans
DSM 10331]
Length = 350
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 104/333 (31%), Positives = 144/333 (43%), Gaps = 40/333 (12%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
NP V +I +DG+V+G G TA+ G PHAEV AL AG ARGA VTLEPC+H+GR+P
Sbjct: 21 PNPWVGAVIERDGVVVGVGRTAHPGGPHAEVAALAAAGALARGAQMSVTLEPCAHHGRTP 80
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---DRMMESEGKIFLHAYLT 143
PC IIE G+ RV V + DPD RV GRG+Q L G+ V R M + L YL+
Sbjct: 81 PCVDAIIEAGVARVEVGLIDPDPRVRGRGIQALQAAGVEVRLAPRAMRARLADDLAPYLS 140
Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
++ R + KIA S D + S IT ++ H LRA+ DAI+VG GT D
Sbjct: 141 HRLRGRPFVVGKIACSLDGAVADRWGQSKWITQEAARELGHRLRAEVDAIIVGRGTFERD 200
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
P+LT R G ++
Sbjct: 201 RPQLTARPGGRLARRQPVRVVASR--------------------------------RPLD 228
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
LL RG +LVEGG + +++ LVD +++ + I++G+
Sbjct: 229 VPEGFVVASESPGALLAAGAARGWVEVLVEGGPTLLGAYLAEGLVDELLVAIAPILLGDE 288
Query: 324 GIPSPLEEG-----YLEKNFMCVRRDYFGSDVC 351
++ G G D+
Sbjct: 289 HARHAVDLGEGRLLEDAIRGAWRAHRRVGEDLV 321
>gi|224419196|ref|ZP_03657202.1| putative riboflavin-specific deaminase [Helicobacter canadensis MIT
98-5491]
gi|253828126|ref|ZP_04871011.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
98-5491]
gi|313142700|ref|ZP_07804893.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
98-5491]
gi|253511532|gb|EES90191.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
98-5491]
gi|313131731|gb|EFR49348.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT
98-5491]
Length = 346
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 72/385 (18%), Positives = 136/385 (35%), Gaps = 71/385 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++ A++ + T NP+V LI+ +G ++ G PHAEV AL+EA
Sbjct: 3 DDNFYLELAIKEAWKTQCQTLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKEAY 62
Query: 65 EEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
AT YVTLEPC H G++P CA + GI
Sbjct: 63 FNLTQDSNILPLEQSIQIHEYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESLGI 122
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+++++ DP+ + G G ++L Q+G + + E++ + + + K
Sbjct: 123 KKLIIGTKDPNPKAQG-GAEYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQKKGN 181
Query: 158 VSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
I+ ++ +H LR + D +++ +VL D+P L R N LQ
Sbjct: 182 FILFKYACRLNGSINGGQISSKETQIFMHNLRCKLDELVISGKSVLIDNPILDSRFNSLQ 241
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
I + + + + V I+ +
Sbjct: 242 SQKNPNITILTRKNDFPQTAPLFSIPNRQVRILHSIPNFSGF------------------ 283
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
++ EGG + + + +D ++++ S + + +
Sbjct: 284 --------------IMCEGGINLLQNLLPQ--IDMLLVFLSPTL------STYDLAPHFN 321
Query: 336 KNFMCVRRDYFGSDVCLEYIGKNLC 360
NF + +D+ L + K C
Sbjct: 322 ANFKLLHSQPIRNDLALWLLPKKEC 346
>gi|307069511|ref|YP_003877988.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
insecticola CARI]
gi|306482771|gb|ADM89642.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia
insecticola CARI]
Length = 346
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 83/347 (23%), Positives = 152/347 (43%), Gaps = 11/347 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ S+ V +S NPSV C I K+ ++ G T + G HAE+ AL+ + +
Sbjct: 1 MLKAIYLSKKAVFFSSPNPSVGCYIKKN--IL--GYTKFKGYNHAEINALKN-IKNNKKI 55
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
Y+TLEPC++ G + C +++I I ++ +C D + + ++ L K I ++ +
Sbjct: 56 NIYLTLEPCNYLGLTNSCLEYLININIYKIFICKLDNNKNIYNNSIKILKLKNIKINLGL 115
Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
K Y + K+ I LKIA S DN I + S IT IS+ L R +
Sbjct: 116 LNKIYKKINKGYFYKVKNKKPLIRLKIASSIDNKICLKNKKSKWITNKISRINNQLWRIK 175
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIV 248
S AI+ GIGT+L D+ + R + ++D K+SL+S ++
Sbjct: 176 SCAIITGIGTILKDNSFINIRNFKKIKDIKNI-LIDTKLKISLNSNYLKNNYIIIFTNSK 234
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L K + + K+++ + + + E G ++ ++ I+ +
Sbjct: 235 NKKKIRKLKKLGIKIFKIKLNNKKLNFKRIIEKISFLKINEIQFESGFSINNTLISLNKI 294
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCL 352
+ I++Y S I++G+ + + YF D+ +
Sbjct: 295 NEILIYLSPIILGKSNNIFNFKIIKKIIYSIKYNFESIKYFNKDLRI 341
>gi|148555358|ref|YP_001262940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sphingomonas wittichii RW1]
gi|148500548|gb|ABQ68802.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sphingomonas wittichii RW1]
Length = 313
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 123/354 (34%), Positives = 165/354 (46%), Gaps = 50/354 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M +A+ + G T+ NP+V C+IV+DG VIGRG T GG PHAE A+E AG + GA
Sbjct: 1 MLSAVALAGRGRGRTAPNPNVGCVIVRDGRVIGRGWTGAGGRPHAEAIAIEAAG-DLAGA 59
Query: 71 TAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T YVTLEPC+H P CA I+ RVV+ + DPD R GRG+ ++ GI V
Sbjct: 60 TLYVTLEPCAHVSARGPACADLIVAAKPARVVIALRDPDPRTDGRGIARITAAGIAVATG 119
Query: 130 MESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
+E+E A TR+ + R H+TLK+A S D I + S ITG ++ HL RA
Sbjct: 120 VEAEAARASMAGFLTRRSKGRPHVTLKLATSLDGRIALPDRSSRWITGPAARAHAHLERA 179
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
+ + ILVG GT+ AD P L RL GL+E SP R +L H ++
Sbjct: 180 RHEMILVGRGTLEADSPGLDVRLPGLEERSPRRAVL-GHGAAPEGWTALRDP-------- 230
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
I GV L VEGGA A +F+ + LV
Sbjct: 231 ------------------------------ADIAGLDGVDHLFVEGGAGAAAAFLAADLV 260
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVCLEYIG 356
D ++LY + IV+G G S + + L + G D Y
Sbjct: 261 DRLLLYTAPIVVGAG--RSAIGDIGLADLAAAHDRWRLADTRTLGIDRLCVYER 312
>gi|329891051|ref|ZP_08269394.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
11568]
gi|328846352|gb|EGF95916.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
11568]
Length = 209
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + DA FM A+ + +G T NP+V C++VKDG+V+ TA GG PHAE QA+
Sbjct: 1 MSGPAQDAVFMRRAIDLALSRMGETWPNPAVGCVLVKDGVVLAEAATAPGGRPHAEEQAV 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
EAGE +GATAYVTLEPC CA F+ E G+ RVV+ DP SGRG + L
Sbjct: 61 PEAGEAVKGATAYVTLEPCGARSSGRKSCAHFLAEAGVERVVIAALDPSPFASGRGTERL 120
Query: 120 SQKGIIV 126
G+ V
Sbjct: 121 RHSGLTV 127
>gi|152990173|ref|YP_001355895.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
gi|151422034|dbj|BAF69538.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2]
Length = 333
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 80/377 (21%), Positives = 148/377 (39%), Gaps = 76/377 (20%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE- 61
+ ++D FM AL+ + + GLT NP+V ++ + +I +G G PHAEV+A++
Sbjct: 1 MVNYDNFFMDIALQEAWRYQGLTYPNPAVGAVVAINNCIISKGAHTKAGAPHAEVEAIKN 60
Query: 62 --------------------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
A + AT YVTLEPC+H+G++PPC+ I +
Sbjct: 61 AYYTLTGDEHVLHLQDALELHEYLVANAKDLFHNATIYVTLEPCNHFGKTPPCSLLIKKL 120
Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
G +RVV+ + DP+ + G +L GI VD ++ E L + + K
Sbjct: 121 GFQRVVIALKDPNE-EAAGGASFLRNCGIEVDIGIQEERAKVLIEPFLQ-WRSSTFTFFK 178
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+A + + +I I+G S+ VH LR + + +++G TV D P L R+ G +
Sbjct: 179 LAQAFNGVID-----GGIISGAESRKYVHALRDRIELLVIGGNTVRTDRPILDARMVGGK 233
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ F ++ R +
Sbjct: 234 APDILIYSRKKEFDTTIPLF---------------------------------QIPNRKV 260
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
++ + +++EGG + + LVD + + + I+ + G +
Sbjct: 261 FVEESLDRIKAYRYVMIEGGEGMLEA--TKDLVDWYLFFVAPIL--KEGKSY-----QVP 311
Query: 336 KNFMCVRRDYFGSDVCL 352
+ + + G D+ +
Sbjct: 312 QKLQFLHQQTCGKDMMI 328
>gi|239917588|ref|YP_002957146.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
gi|281413925|ref|ZP_06245667.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
gi|239838795|gb|ACS30592.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665]
Length = 377
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 85/366 (23%), Positives = 139/366 (37%), Gaps = 38/366 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
M A+ + G+ NP V ++ + G V+ G G HAEV AL
Sbjct: 12 MDLAVHAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALARWRAARAA 69
Query: 69 ----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
G T +VTLEPC H G + PC+Q +++ I + V DP G +
Sbjct: 70 DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAEIGALRYAVADPTGHDGGGAARL 129
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ + E+ + + R +T +A S D A S ITG
Sbjct: 130 AAHGVHVTGPTGETAALTLTARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSQWITGPD 189
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
S+ H +R++ DAI+VG GTVLADDP LT R E + + + + D ++
Sbjct: 190 SRVHAHKVRSRVDAIVVGTGTVLADDPRLTARDAVGAELAHQPVPVVQGHRPVPDGAALR 249
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T + ++ + + ALA +L+EGG V
Sbjct: 250 THPVVLEVLDHDPHAVLAALAAHPGPWPHGRRAE----------------HVLIEGGPRV 293
Query: 299 AHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCV-------RRDYFGSDV 350
+++ + LVD +++Y + +++G + L+ L + G DV
Sbjct: 294 LGAWLRAGLVDELMVYTAPLLLGPGRAAVAGLDVATLSEGLRWHPDPAEGGPVRALGVDV 353
Query: 351 CLEYIG 356
Sbjct: 354 WTHLSP 359
>gi|254229831|ref|ZP_04923237.1| Pyrimidine deaminase [Vibrio sp. Ex25]
gi|262395603|ref|YP_003287456.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
Ex25]
gi|151937667|gb|EDN56519.1| Pyrimidine deaminase [Vibrio sp. Ex25]
gi|262339197|gb|ACY52991.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp.
Ex25]
Length = 141
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL S+ + NP V C++VKD ++ G T G HAEV+AL
Sbjct: 3 HEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V
Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEV 121
>gi|328470490|gb|EGF41401.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
parahaemolyticus 10329]
Length = 141
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL S+ + NP V C++VKD ++ G T G HAEV+AL
Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V
Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEV 121
>gi|153836433|ref|ZP_01989100.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
parahaemolyticus AQ3810]
gi|260901767|ref|ZP_05910162.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ4037]
gi|149750335|gb|EDM61080.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio
parahaemolyticus AQ3810]
gi|308108841|gb|EFO46381.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AQ4037]
Length = 141
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL S+ + NP V C++VKD ++ G T G HAEV+AL
Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V
Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEV 121
>gi|28900546|ref|NP_800201.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|260365428|ref|ZP_05777965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
K5030]
gi|260877493|ref|ZP_05889848.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AN-5034]
gi|260894835|ref|ZP_05903331.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
Peru-466]
gi|28808926|dbj|BAC62034.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085328|gb|EFO35023.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
Peru-466]
gi|308090602|gb|EFO40297.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
AN-5034]
gi|308114425|gb|EFO51965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus
K5030]
Length = 141
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL S+ + NP V C++VKD ++ G T G HAEV+AL
Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V
Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEV 121
>gi|167828089|ref|ZP_02459560.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
9]
Length = 97
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
L EAGE ARGATAYVTLEPC+H+GR+PPCA +
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANAL 93
>gi|257413677|ref|ZP_04743810.2| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
gi|257202725|gb|EEV01010.1| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82]
Length = 173
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G
Sbjct: 34 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI
Sbjct: 94 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 153
Query: 125 IVDRMMESEGKIFLHAYLTR 144
+V + E + +
Sbjct: 154 LVTEGVLQEECEYQNRVFFH 173
>gi|167849555|ref|ZP_02475063.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
B7210]
gi|167922717|ref|ZP_02509808.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
BCC215]
Length = 94
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
L EAGE ARGATAYVTLEPC+H+GR+PPCA +
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPCANAL 93
>gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
tauri]
gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus
tauri]
Length = 655
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 25/365 (6%)
Query: 16 RFSRWHVGLTSTNPSVACLIVK-DGIV-IGRGVTAYGGCPHAE---VQALEEAGEEARGA 70
+ G ++ +P AC I +G + RG G AE V+AL G RG
Sbjct: 69 ALAMSSEGASAPHPLSACAITDANGTTRVARG-HEGQGATRAEIACVEALVRDGVGVRGG 127
Query: 71 TAYVTLEP-CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA V LEP + ++ G+RRVVV + P + GR ++ + ++GI+VD +
Sbjct: 128 TACVNLEPVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMRERGIVVDVL 187
Query: 130 MES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+ A L R + K A++ D I S +TG +
Sbjct: 188 DARASGLEGEVAARCRETNEALLYRVATGLPYSVYKYAMTLDGKIATDNGHSSWVTGAEA 247
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ +V R ++D I+VG TV D+P LTCR P RI+L L D+++ +
Sbjct: 248 RERVFRERKRADCIVVGGATVRKDNPRLTCR--EETGFQPARIVLSRTLNLPEDAELWRV 305
Query: 240 ALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+AP I T+ P R K + ++ + + + RG E G +
Sbjct: 306 RDVAPTIVCTTKGARPEFQKMLRSKGVEVVEFNELTPLEAAKYMHARGFLRCFWECGGGL 365
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCLE 353
A + S + ++ + + +IG P+PL + E V + G D+ +
Sbjct: 366 AAPAMKSGVFHHVMAFVAPKLIGGNSAPTPLGDLGFEAMHDALPLAGVTLETVGRDILVR 425
Query: 354 YIGKN 358
N
Sbjct: 426 GYVPN 430
>gi|91225503|ref|ZP_01260625.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
gi|269968858|ref|ZP_06182841.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
gi|91189866|gb|EAS76139.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01]
gi|269826538|gb|EEZ80889.1| putative riboflavin deaminase [Vibrio alginolyticus 40B]
Length = 141
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL S+ + NP V C++VKD ++ G T G HAEV+AL
Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V
Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGISKVVVAILDPDPRNSGRGIEILKQAGIEV 121
>gi|269961115|ref|ZP_06175483.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834066|gb|EEZ88157.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 159
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ +
Sbjct: 21 QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V
Sbjct: 81 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEV 139
>gi|167898152|ref|ZP_02485554.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894]
Length = 90
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPC 88
L EAGE ARGATAYVTLEPC+H+GR+PPC
Sbjct: 61 LREAGERARGATAYVTLEPCAHFGRTPPC 89
>gi|153833299|ref|ZP_01985966.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
gi|148870435|gb|EDL69356.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01]
Length = 159
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ +
Sbjct: 21 QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD+R +GRG+ L + G+ V
Sbjct: 81 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDLRNAGRGIDILKEGGVEV 139
>gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 628
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 83/367 (22%), Positives = 137/367 (37%), Gaps = 22/367 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D ++ A+ + GLT +P C++V DG V+ G AEV A + A
Sbjct: 59 DLEHVARAVELAGESDGLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAADAANG 118
Query: 66 EARGATAYVTLEP-CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A G AY+ LEP + + G+ RVV+ + P + L +G+
Sbjct: 119 GAAGGCAYLNLEPVHGNDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALRARGV 178
Query: 125 IV------------DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
V + + A L R R LK A++ D I S
Sbjct: 179 HVVVLGDDDLDEREEEAKQRGEAARNRALLYRVATGRPFSVLKYAMTVDGKIATTSGHSS 238
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
+TG ++ V RA+SDA++VG TV D+P LT R + + +
Sbjct: 239 WVTGPTARGAVWAERARSDAVVVGGSTVRRDNPNLTTRRKDGHLPARVVLSRTMDL-PGP 297
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + T+ +++ P R+ + +I D + RG L
Sbjct: 298 RTNLWDTSEAPTIVMTRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEYCGKRGYLQLFW 357
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYF---- 346
E G +A +N ++ ++ + + +IG G PSP+ E L+ +
Sbjct: 358 ECGGGLAAPALNDGVIHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMTDAMTLRGLALST 417
Query: 347 -GSDVCL 352
G DV L
Sbjct: 418 HGRDVLL 424
>gi|297627300|ref|YP_003689063.1| riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
(5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296923065|emb|CBL57649.1| Riboflavin-specific deaminase
(diaminohydroxyphosphoribosylaminopyrimidine deaminase)
(5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 406
Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 96/363 (26%), Positives = 147/363 (40%), Gaps = 40/363 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY---GGCPHAEVQALEEAGEE 66
+ A S NP V C+++ DG VI G A + A G +
Sbjct: 67 LRRAFELSARGPAD-DPNPRVGCVLLAPDGGVIAEGWHRGAGTAHAEAAALAAARAVGSD 125
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
RGATA V+LEPC+H+GR+ PCA + + GI RVV V DP+ V+ G Q L ++G+ V
Sbjct: 126 VRGATAVVSLEPCAHWGRTGPCAVALADAGITRVVFSVPDPNP-VAAGGTQVLRERGVEV 184
Query: 127 DRMMESEGKIFLHAYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFI 178
+ + + +K+A + D + A S ITG
Sbjct: 185 IGGVAEASGREALGDWLARQVAPLPGEVGARPQVLVKMAATLDGRVAAADGTSRWITGPA 244
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+++ H RA+ AI+VG GT+LADDP LT +L S
Sbjct: 245 ARDHAHGTRARVGAIVVGTGTLLADDPALTA-------------------RLPDGSLADH 285
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P+ +V A R ++ D ++L L RGV +L+EGG +
Sbjct: 286 Q----PLRVVMGTRPVPDDAAVRGPGGALLALRTHDPAEVLRELSSRGVREVLIEGGPTI 341
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A +F+ + L D + Y S ++G G + F V G D+ +
Sbjct: 342 ASAFLAAGLADELHAYISPALLGAGAQAVSGLGISTITSALRFHIVDVHRLGDDLLVVAR 401
Query: 356 GKN 358
++
Sbjct: 402 PRS 404
>gi|329848658|ref|ZP_08263686.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
C19]
gi|328843721|gb|EGF93290.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
C19]
Length = 299
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
FM A+ +R G T NP+V C++VKD +V+G G T GG PHAE AL+ AG+ ARG
Sbjct: 101 FMRQAIALAR--PGHTWPNPAVGCVLVKDDVVVGEGATGDGGRPHAEENALDMAGDVARG 158
Query: 70 ATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
ATAYVTLEPC C++ ++ G+ RVV DDP S G Q L GI V+
Sbjct: 159 ATAYVTLEPCGKRSTGCASCSERLVAAGVARVVYACDDPSPFASHVGPQRLRDAGITVEA 218
Query: 129 MMESEGKIFLHAYLTRQ 145
+ + L A
Sbjct: 219 GLLHDEAAHLIAPFAHF 235
>gi|154486847|ref|ZP_02028254.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
L2-32]
gi|154084710|gb|EDN83755.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis
L2-32]
Length = 269
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
+M+ AL +R G NP V ++V G V+ G PHAE A + A G
Sbjct: 12 REYMAQALELARKGAGWVDPNPLVGAVVVSGGEVLATGYHDRYRGPHAERMAFDYADAHG 71
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+
Sbjct: 72 IDLTGATVIDTLEPCCHVGSQPACTDLILAHGIARVVVGSVDPNPIVAGKGLRILEEAGV 131
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
V R + E ++ + + +
Sbjct: 132 EVVRDVMREECDAINRHFFHYITTGKPYIV 161
>gi|108804202|ref|YP_644139.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Rubrobacter xylanophilus DSM 9941]
gi|108765445|gb|ABG04327.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rubrobacter xylanophilus DSM 9941]
Length = 369
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 105/370 (28%), Positives = 159/370 (42%), Gaps = 36/370 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------------VTAYGGCPHAEVQ 58
M A + + NP + G HAE
Sbjct: 1 MDLARELAERGRYTAAPNP------------LVGAVVVRGGAVVGEGWHVRPGEEHAEAM 48
Query: 59 ALEEAGEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
AL AG ARGAT YVTLEPC+H+ PPCA+ ++ GIRR+VV DP+ RV+GR L
Sbjct: 49 ALRRAGAAARGATMYVTLEPCNHHLRTPGPPCAEAVLRAGIRRLVVGHADPNPRVNGRSL 108
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
+ L + G+ V+ + + + + R + LK+AV+ D I AG S +TG
Sbjct: 109 RRLREAGVEVEVLDDPVFERQNERFFWAMRRGRPFVHLKLAVTLDGRIAAAGGDSRWVTG 168
Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236
++ + H LRA++ A+LVG GT ADDP LT R + +R +LDP L S++
Sbjct: 169 PEARRRAHALRAEAGAVLVGAGTARADDPLLTPRGLDEEPPRVLRAVLDPRLTLPEASRL 228
Query: 237 IKTALLAPVIIVTENDDPVLALAF------RKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ TA P+++ + + DL +L L RG + +
Sbjct: 229 VSTAPEWPLVVFCAEGASPRRRRRLEAAGAEVEAVPAAGDGGLDLGAVLERLRLRGASGV 288
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346
LVEGG A F+ LV+ + L+ + + G G+P + F +
Sbjct: 289 LVEGGGQTARRFVAGGLVNKMTLFYAPRLAGADGVPMVGGLRVTRMAQAPRFSVAGVERL 348
Query: 347 GSDVCLEYIG 356
G D+ +
Sbjct: 349 GDDLAVTLYP 358
>gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299]
gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299]
Length = 639
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 83/387 (21%), Positives = 137/387 (35%), Gaps = 37/387 (9%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
+ D + A S GL +P C+++ G V+ R G +EV A+
Sbjct: 26 TFTDDDLAHVLCAAELSHGSDGLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAV 85
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPC-AQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
EAG A G AY+ LEP ++ + RVVV + P V G+ + L
Sbjct: 86 REAGARADGGVAYLNLEPAHGPAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAAL 145
Query: 120 SQKGIIVDRMMES---------------------EGKIFLHAYLTRQVEKRSHITLKIAV 158
G+ VD + E + L R R K A+
Sbjct: 146 RDAGVRVDVLGEFTSRFTSAADERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAM 205
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
+ D I S +TG ++ QV RA+SDA++VG TV D+P LT R +G +
Sbjct: 206 TVDGKIATTSGHSAWVTGPAARQQVWAERARSDAVVVGGTTVRRDNPNLTTRRDGGHRPA 265
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+ + P + + T +++ R + ++ D +
Sbjct: 266 RIVRVRKPR------TNLWNTDEANTIVMTVAGARREFQAELRALGVEVVEFDELTPGAV 319
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP-------LEE 331
RG L E G +A + + ++ + + ++G G P+P LE
Sbjct: 320 ADYCAKRGYLQLFWECGGGLAGPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVGETGLER 379
Query: 332 GYLEKNFMCVRRDYFGSDVCLE-YIGK 357
+ G DV + Y+
Sbjct: 380 MTDALALRGLGIRKHGRDVLIIGYLPP 406
>gi|256378033|ref|YP_003101693.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
43827]
gi|255922336|gb|ACU37847.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM
43827]
Length = 341
Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 102/345 (29%), Positives = 146/345 (42%), Gaps = 30/345 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+ AL + NP V C+++ DG V+ G G HAE AL EAG ARG
Sbjct: 8 MARALELAATPGVPLGPNPRVGCVLLADDGTVVAEGHHRGAGTAHAEADALAEAGAAARG 67
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
TA VTLEPC+H GR+ PCA+ ++E G+RRVV DP+ V+ G + L GI V+
Sbjct: 68 TTAVVTLEPCNHTGRTGPCARALVEAGVRRVVFAQSDPNP-VATGGTRTLRDAGIEVEHG 126
Query: 130 -MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188
M + A++ R +T K A S D A S I+ ++ VH LRA
Sbjct: 127 LMADRARALNRAWVFGVEHGRPLVTWKFAASLDGRSAAADGTSRWISNSAARADVHRLRA 186
Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
D +LVG T + DDP L R D ++ L P + +
Sbjct: 187 GCDVVLVGAETAVVDDPRL-----------TARGPDDAPLAHQPLRAVLGERELPPTLRL 235
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ V L RD + L L G + +EGG VA +F+ + LV
Sbjct: 236 FDGSAEVAQL------------RTRDPRAALAELFELGRRHVFLEGGPTVAAAFLRAGLV 283
Query: 309 DSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF-GSD 349
D I+ Y + +++G G + + + G D
Sbjct: 284 DEIVAYVAPVLLGAGRAAAGDLGITGIGAALRPVVTDVTVIAGGD 328
>gi|156977316|ref|YP_001448222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
harveyi ATCC BAA-1116]
gi|156528910|gb|ABU73995.1| hypothetical protein VIBHAR_06102 [Vibrio harveyi ATCC BAA-1116]
Length = 201
Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+FM AL S + NP V C++VKDG ++ G T G HAEV+AL+ +
Sbjct: 63 QQFMLRALEVSLNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYKGDL 122
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V
Sbjct: 123 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEV 181
>gi|119025436|ref|YP_909281.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
ATCC 15703]
gi|118765020|dbj|BAF39199.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis
ATCC 15703]
Length = 317
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67
M+ AL +R G NP V ++V+DG V+ G PHAE A + A G +
Sbjct: 49 MAQALELARKGAGWVDPNPLVGAVVVRDGEVLATGYHDRYRGPHAERMAFDYADAHGIDL 108
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ V
Sbjct: 109 TGATVIDTLEPCCHVGSQPACTALILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEVV 168
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITL 154
R + E ++ + + +
Sbjct: 169 RDVMREECDAINRHFFHYITTGKPYIV 195
>gi|75761016|ref|ZP_00741019.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74491502|gb|EAO54715.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 148
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A +
Sbjct: 55 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 114
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFI 92
A+ AT YVTLEPCSH+G+ +
Sbjct: 115 AKDATVYVTLEPCSHFGKHHLVVNXL 140
>gi|300934515|ref|ZP_07149771.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Corynebacterium resistens DSM 45100]
Length = 320
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 104/332 (31%), Positives = 144/332 (43%), Gaps = 36/332 (10%)
Query: 38 DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
DG V GRG T G HAE+ AL+EAG ARG A VTLEPC+H GR+ PC Q ++ GI
Sbjct: 6 DGEVAGRGATEPAGGRHAEIVALDEAGTRARGGRAIVTLEPCNHTGRTGPCTQALLAAGI 65
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA--------YLTRQVEKR 149
RV DP ++ G L+ G+ V +L KR
Sbjct: 66 VRVDYLFADPFE-LASGGANSLASAGVEVHGPYLPHPSQAAPWTPVQGVEAWLRGVKNKR 124
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ LK+A + D + + S ITG ++ H RAQ DAILVG GTV ADD
Sbjct: 125 PYVILKLAATMDGRVAASDGSSQWITGAAARGHAHARRAQVDAILVGTGTVEADD----- 179
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
P DS L P+ +V N A ++
Sbjct: 180 ----------------PKLTARDDSGQPLPKELQPLRVVMGNRSIPEDAAVMQQPGETFL 223
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----G 324
D+ ++L L RGV ++LVEGG +VA +F+N+ +VD I Y + V+G G G
Sbjct: 224 ARSHDVHQVLAQLHSRGVVTVLVEGGPSVAAAFMNAGVVDEINYYCAPAVLGAGFNAMDG 283
Query: 325 IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYI 355
+ + + F G+D+C
Sbjct: 284 STLEMGRTIQDLQRFRPREIQILGNDICWVLT 315
>gi|325963044|ref|YP_004240950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arthrobacter phenanthrenivorans Sphe3]
gi|323469131|gb|ADX72816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arthrobacter phenanthrenivorans Sphe3]
Length = 386
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 94/350 (26%), Positives = 144/350 (41%), Gaps = 37/350 (10%)
Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77
G NP V ++V G + G G HAE A+ +A G + G T VTLE
Sbjct: 41 RGPRGANPLVGAVVVDPGGRPLVTGFHRGAGTAHAEADAIAQAAAAGLDLTGCTMVVTLE 100
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H GR+ PCA II GI VV VDDP +G + + +E
Sbjct: 101 PCNHVGRTGPCAAAIIAAGITDVVYAVDDPHDPAAGGATTLREAGVRVRSGLGATESLDL 160
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
+ KR +TL IA + D+ I S I+ S H +R + DAILVG
Sbjct: 161 NRQWFEAVAAKRPFVTLHIAQTLDSRIAAEDGTSQWISSPESLADNHAIRGRIDAILVGT 220
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
TVL D+P +L+ + A PV V D
Sbjct: 221 QTVLVDNP-----------------------RLTAREPSGELASKQPVRAVMGMRDIPAD 257
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A ++ +++ RD ++ L+IL G+ L+VEGG+ + +F+ + LVD +I+Y +
Sbjct: 258 AAVHGRDGRVVHLPTRDPREALSILYAHGIRHLMVEGGSRILSAFLAAELVDELIVYLAP 317
Query: 318 IVIGEGGIPS----PLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKN 358
++G G P+ + +++ G D+ L +
Sbjct: 318 TLLGS-GTPALTGLGITTLADAQHWDWDPSDGGSVRTLGQDLRLHLRPQR 366
>gi|302381385|ref|YP_003817208.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Brevundimonas subvibrioides ATCC 15264]
gi|302192013|gb|ADK99584.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Brevundimonas subvibrioides ATCC 15264]
Length = 209
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/127 (47%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M ++ D M A+ + +G T NP+V C+IVKDG+V+ TA GG PHAE QA+
Sbjct: 1 MSDAAADQVHMRRAIDLALARMGETWPNPAVGCVIVKDGMVLSEAATAPGGRPHAEEQAV 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
AG GATAYVTLEPC CAQF+ E GI RVVV DP SGRG + L
Sbjct: 61 PAAGPGVAGATAYVTLEPCGARSSGRASCAQFLAEAGISRVVVAALDPSPFASGRGTERL 120
Query: 120 SQKGIIV 126
Q G+ V
Sbjct: 121 RQAGLRV 127
>gi|255080300|ref|XP_002503730.1| predicted protein [Micromonas sp. RCC299]
gi|226518997|gb|ACO64988.1| predicted protein [Micromonas sp. RCC299]
Length = 215
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQA 59
+ DA M AL + G T NP V C+IV + G+V+G G G PHAEV A
Sbjct: 67 EYTEADAERMRRALALAATAAGKTFPNPVVGCVIVDERSGVVVGEGYHPKAGEPHAEVFA 126
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
L AG A+G TAYVTLEPC H+GR+PPC++ +++ G+ RVVV DPD RVSG G++ L
Sbjct: 127 LRAAGANAKGCTAYVTLEPCDHFGRTPPCSRALVDAGVTRVVVGFVDPDPRVSGGGIRTL 186
Query: 120 SQKGIIVDRMME 131
GI V
Sbjct: 187 LDAGIEVCVGCC 198
>gi|315497946|ref|YP_004086750.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Asticcacaulis excentricus CB 48]
gi|315415958|gb|ADU12599.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Asticcacaulis excentricus CB 48]
Length = 147
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/121 (42%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+R M+ A+ + +G T NP V C+IVKDG+VI T GG PHAE AL +
Sbjct: 3 DSRHMARAIAMATAQLGRTVPNPPVGCVIVKDGVVIAEAATGDGGRPHAEEAALAQLDHR 62
Query: 67 ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
A GATAYVTLEPC C+Q ++E G+ RVV DP S G+ +S+ G+
Sbjct: 63 AEGATAYVTLEPCGARSHGGLSCSQRLVEAGVSRVVFACHDPSPFASHLGIICMSEAGLK 122
Query: 126 V 126
V
Sbjct: 123 V 123
>gi|213579885|ref|ZP_03361711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 301
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 93/301 (30%), Positives = 136/301 (45%), Gaps = 18/301 (5%)
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V +
Sbjct: 1 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGL 60
Query: 131 ESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
L+ R ++ LK+ S D MA S IT ++ V LRAQ
Sbjct: 61 MMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQ 120
Query: 190 SDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIK 238
S AIL TVLADDP LT R P+RI++D +++ +I++
Sbjct: 121 SHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQ 180
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
I +D + + DL L+ L + + S+ VE G +
Sbjct: 181 QPGE--TWIARTQEDSHAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEAGPGL 238
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
A + + + LVD +I+Y + ++G LE+ F + G DVCL
Sbjct: 239 AGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDVCLHM 298
Query: 355 I 355
+
Sbjct: 299 V 299
>gi|56459161|ref|YP_154442.1| riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
gi|56178171|gb|AAV80893.1| Riboflavin-specific deaminase [Idiomarina loihiensis L2TR]
Length = 141
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 72/119 (60%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+FM AL S+ + NP V C++VKDG VI +G T G HAEV+AL +
Sbjct: 3 EKFMLEALNISKQALPHCEPNPPVGCVLVKDGEVISKGFTQAIGGSHAEVEALNAHSGDL 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
G TAYVTLEPCS GR+ CA ++ GI+ V++ + DPD+R +G+G + L+ G+ V
Sbjct: 63 SGVTAYVTLEPCSFVGRTAACASTLLASGIKHVIIAMLDPDIRNNGKGAEILTAGGVKV 121
>gi|296272024|ref|YP_003654655.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
7299]
gi|296096199|gb|ADG92149.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM
7299]
Length = 335
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 74/378 (19%), Positives = 130/378 (34%), Gaps = 75/378 (19%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A+ + + LT NP+V C++VK+G ++ G HAEV AL+ A
Sbjct: 4 DDKFYMKLAIDEAWKYQLLTYPNPAVGCVVVKNGEILAIEAHKEAGMSHAEVNALKAAYL 63
Query: 66 E---------------------------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
+ YVTLEPC+H G++P CA + E +
Sbjct: 64 KKHANDTLKIKKSSREIHEYLLKNHNNFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPK 123
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
RV++ +D + + SG S I M+ E L+ ++ + +
Sbjct: 124 RVIIAHEDTNKQASGGIQTLESVNIDITLDCMKKEAYDLLYPFIKWNSGTFVFYKMAQTL 183
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
+ ++ +++ VH LR + D +L+G TV D P L
Sbjct: 184 NGS--------IDGKVSSTMAQLYVHTLRDKIDLMLIGGNTVRTDKPTLD---------- 225
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
R I + + SK P+ V + +
Sbjct: 226 -ARYIAGRAPNVMIYSKNKIFDNNIPLFKVPNREVIIS---------------------- 262
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ ++VEG + + + R +D I+L S + ++ +F
Sbjct: 263 DDLFKLLDYKFVMVEGIYNLMDA-LKER-IDYIVLLVSPKI-----RKGVNALNEIDMDF 315
Query: 339 MCVRRDYFGSDVCLEYIG 356
V +Y G + L
Sbjct: 316 KIVHENYIGEEKILFLKR 333
>gi|307328879|ref|ZP_07608049.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
gi|306885544|gb|EFN16560.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger
Tu 4113]
Length = 297
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/117 (47%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ S +G TS NP V C+I+ +DG+ +G G G HAEV AL AGE A G
Sbjct: 10 MRRAIAISAQGLGTTSPNPPVGCVILDRDGVPVGEGYHLRKGDHHAEVNALTAAGERAEG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TA VTLEPC+H+GR+PPC Q +I+ + RV++ V DP R G G L Q GI V
Sbjct: 70 GTAVVTLEPCNHHGRTPPCRQALIDAKVSRVLMAVMDPTSRGEG-GAAVLEQAGIEV 125
>gi|262277170|ref|ZP_06054963.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
gi|262224273|gb|EEY74732.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114]
Length = 357
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 139/345 (40%), Gaps = 11/345 (3%)
Query: 16 RFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74
+ S + T NP V I K+ + VT G PHAE AL + ++ Y
Sbjct: 19 KLSEINQFETFPNPCVGAAGIDKNNHI-HLAVTGKNGSPHAEF-ALLKNKKKNFINELYT 76
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
+LEPC H G++P C+ II+ ++++ D D RV G K + +
Sbjct: 77 SLEPCCHIGKNPSCSNLIIKKKVKKIFSSSIDLDERVK--GKTNRLLKKKNISLKYTKQP 134
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ ++ ++ KIA S D T + + LR QSD+IL
Sbjct: 135 SKPSILHNYCNSNQKPYVVAKIASSSDFYSKHKFKRLFTSTSALKFAHL--LRYQSDSIL 192
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
+G T+ D+P L CRLNG+++ + II + L + K+ L + +
Sbjct: 193 IGKNTINHDNPSLNCRLNGIEKKIAIFII---NKNLFFNKKVFLNNNLKGSYVFHSEKNK 249
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
K I + + + LL I+ G LL+EGGA F+ + ++ +
Sbjct: 250 TKIKKVGKFFKLIYFDLNQPINDLLKIVYQLGYKKLLIEGGANTLRYFLKGKCINELYHV 309
Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
++++ + G+ S +++ D+ L Y K +
Sbjct: 310 KNKLNFNKNGLLS-IKKIIKNNKLPLNEVLNLEQDLILNYKSKYV 353
>gi|78776878|ref|YP_393193.1| riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
DSM 1251]
gi|78497418|gb|ABB43958.1| Riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans
DSM 1251]
Length = 336
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 72/381 (18%), Positives = 142/381 (37%), Gaps = 77/381 (20%)
Query: 6 FDA-RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63
D +M AL + + GLT NP+V C+I+ K G ++ G PHAEV+AL+ A
Sbjct: 3 IDENFYMRLALNEAWKYQGLTYPNPAVGCVIISKSGEILALEAHKRAGLPHAEVEALKSA 62
Query: 64 ---------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
+ + AT Y TLEPCSH G++P CA I +
Sbjct: 63 YIVLSGDKKILELTESAQIHNYLLENHNDYFKDATIYTTLEPCSHIGKTPSCATLISKLN 122
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
I++++V D + ++ G + ++ G+ + + + L +K + K
Sbjct: 123 IKKLIVGSLDSNE-IASGGNKVVNDAGVEIKYGVMQKECDELLLPFWL-WQKDKFVFFKW 180
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
A + + I+ S+ +VH +R D +++G +V D P L RL
Sbjct: 181 AQRLNGTVD-----GGIISSSKSRTKVHAMRDVCDLLVIGGNSVRVDRPTLDARLV---- 231
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + + K+ I + + + ++ +
Sbjct: 232 ----------NGRAPDILIVSKSDDFDKTIPLFSVKNRDVVISDNFDIL----------- 270
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ ++++EGG + + +V+ + + S ++ G+ G +
Sbjct: 271 --------KNYKNIMIEGGGGMFEY--SKDVVNYHLTFISPLIGGDDGF------TCSSE 314
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
F + D D+ + +
Sbjct: 315 KFKILNLDQDEQDIIMWMKRE 335
>gi|224009578|ref|XP_002293747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970419|gb|EED88756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 256
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57
+++ D + M A+R +R G T NP+V C++V G +IG G G PHAEV
Sbjct: 96 SLTTSDVQHMKLAVRLARIGYGNTFPNPAVGCVLVSHGDDSSSIIGSGFHPKAGMPHAEV 155
Query: 58 QALEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
AL EA TAYVTLEPC H G++PPCA ++ GI RVVV DP+ RV G
Sbjct: 156 FALLEACGHDHFADSNVTAYVTLEPCCHEGQTPPCALSLVVAGINRVVVGFRDPNPRVDG 215
Query: 114 RGLQWLSQKGIIVDRM 129
G+Q L GI V M
Sbjct: 216 GGIQLLKDAGIDVHVM 231
>gi|157738249|ref|YP_001490933.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
butzleri RM4018]
gi|157700103|gb|ABV68263.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter
butzleri RM4018]
Length = 334
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 76/384 (19%), Positives = 131/384 (34%), Gaps = 77/384 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL
Sbjct: 1 MKI--DDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNAL 58
Query: 61 EEAGEE---------------------------ARGATAYVTLEPCSHYGRSPPCAQFII 93
+ A + YVTLEPC+H G++P CA +
Sbjct: 59 KTAYLKDNPNSILKTKNSSFDIHQFLLQNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLK 118
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
E +RV++ V DP + + GL+ L + I V + + + L
Sbjct: 119 ELKPKRVIISVKDP-NKQATGGLETLRNENINVTLDILKKDGLNLILPFISWQN------ 171
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
K + + G I+ + VH LR + D +++G +V D P L
Sbjct: 172 -KSCIFFKMAQTLNGSIDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDT---- 226
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
R I + + + SK P+ + +
Sbjct: 227 -------RYIQGKNPDIFIYSKNKVFDTNIPLFKIPNRKVLIS----------------- 262
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ +++EG + + R +D IL S +
Sbjct: 263 -----DDLYKLLDYKFIMIEGVYNLLDK-LKER-IDFFILIISPKI-----RKGQNALNE 310
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGK 357
++ +F + ++ G D + K
Sbjct: 311 IDLDFEIIHENFIGEDKIVFLKRK 334
>gi|242309140|ref|ZP_04808295.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
98-5489]
gi|239524181|gb|EEQ64047.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT
98-5489]
Length = 343
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 69/379 (18%), Positives = 134/379 (35%), Gaps = 71/379 (18%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63
++ A++ + T NP+V I+ K+G ++ G PHAEV AL+ A
Sbjct: 6 YLELAIKEAWKTQCQTLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNAYFHLT 65
Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ +T Y TLEPC H G++P CA I GI+ +V
Sbjct: 66 QDSAILSLQESHQIHQYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLGIKNLV 125
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
V DP+ + G G ++L+ I V ++ E L + + + K +
Sbjct: 126 VAAKDPNPKAQG-GAEYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQKKGSFVLF 184
Query: 162 NMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
I+ ++ +H LR++ + +++ T+L D+P L R L+ +P
Sbjct: 185 KYACRLDGSIDGGQISSKETQIFMHNLRSKLNNLIISGKTILLDNPTLDSRFCSLENKNP 244
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + + V I +
Sbjct: 245 PNITILTKNSNFPQTAPLFAIPNRKVEICHSIPNFSGF---------------------- 282
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
++ EGG + S + +D ++++ S + + + + +F
Sbjct: 283 ----------VMCEGGNNLLESLLPH--IDMLLVFVSPTL------STYHLTHHFQAHFK 324
Query: 340 CVRRDYFGSDVCLEYIGKN 358
+ G+D+ L + +
Sbjct: 325 LLHCQMIGNDIALWLLPQK 343
>gi|294142852|ref|YP_003558830.1| riboflavin-specific deaminase [Shewanella violacea DSS12]
gi|32562925|dbj|BAC79238.1| putative riboflavin deaminase [Shewanella violacea]
gi|293329321|dbj|BAJ04052.1| riboflavin-specific deaminase, putative [Shewanella violacea DSS12]
Length = 143
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 75/122 (61%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
FD +FM AL+ S+ + NP V C++V D VI G T G HAE++AL
Sbjct: 2 DFDKKFMLRALKLSQTALPECQPNPPVGCVLVLDDQVIAEGYTQKIGGNHAEMEALNAYD 61
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
TAYVTLEPCS GR+P CA +++ GI+RVVV + DPD+R +G+G+Q L ++GI
Sbjct: 62 GSMGLVTAYVTLEPCSFVGRTPACASTLVKSGIKRVVVAILDPDLRNNGKGIQTLEKEGI 121
Query: 125 IV 126
V
Sbjct: 122 KV 123
>gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125 [Chlorella variabilis]
Length = 697
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 87/387 (22%), Positives = 142/387 (36%), Gaps = 49/387 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+ D R + A S+ +G T +P C++V + G P AE + G
Sbjct: 13 AKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLV-----------SSEGVPLAEASQWAQQG 61
Query: 65 EEARGATA-------------YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
EA A Y+ LE +G + G+ RVVV + P +
Sbjct: 62 TEAPECAAARQAGGAAAGGTAYLNLECGDCHGDRAAVDA-LAGAGVARVVVGMRHPLPHL 120
Query: 112 SGRGLQWLSQKGIIVDRMMESEG----------------KIFLHAYLTRQVEKRSHITLK 155
G L L G+ V + E+ A L R V KR LK
Sbjct: 121 RGTALAQLRAAGLRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLLK 180
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
A++ D I S ++ S+ +V RA+SDA++VG TV D+P+LT R G
Sbjct: 181 YAMTLDGKIATHTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREGGH 240
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ RI++ L ++K+ + V+ A R++ + ++ D
Sbjct: 241 QPM--RIVMSRTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLTP 298
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
+ RG L E G +A I + + + + + +IG P+P+ +
Sbjct: 299 DAVARYCYDRGFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGFV 358
Query: 335 ----EKNFMCVRRDYFGSDVCLE-YIG 356
VR G D+ L Y+
Sbjct: 359 EMTQALPLSEVRWQQVGPDLMLTGYLP 385
>gi|315636537|ref|ZP_07891773.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
gi|315479186|gb|EFU69883.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22]
Length = 334
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 76/384 (19%), Positives = 131/384 (34%), Gaps = 77/384 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL
Sbjct: 1 MKI--DDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNAL 58
Query: 61 EEAGEE---------------------------ARGATAYVTLEPCSHYGRSPPCAQFII 93
+ A + YVTLEPC+H G++P CA +
Sbjct: 59 KTAYLKDNPNSILKTKNSSFDIHQFLLHNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLK 118
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
E +RV++ V DP + + GL+ L + I V + + + L
Sbjct: 119 ELKPKRVIISVKDP-NKQATGGLETLKNENIDVTLGILEKDGLNLILPFISWQN------ 171
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
K + + G I+ + VH LR + D +++G +V D P L
Sbjct: 172 -KSCIFFKMAQTLNGSIDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDT---- 226
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
R I + + + SK P+ + +
Sbjct: 227 -------RYIQGKNPDIFIYSKNKVFDNNIPLFKIPNRKVLIS----------------- 262
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ +++EG + + R +D IL S +
Sbjct: 263 -----DDLYKLLDYKFIMIEGVYNLLDK-LKER-IDFFILIISPKI-----RKGQNALNE 310
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGK 357
++ +F + ++ G D + K
Sbjct: 311 IDLDFEIIHENFIGEDKIVFLKRK 334
>gi|46204084|ref|ZP_00209252.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis
[Magnetospirillum magnetotacticum MS-1]
Length = 320
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 96/321 (29%), Positives = 148/321 (46%), Gaps = 15/321 (4%)
Query: 42 IGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
+ G G PHAE AL +A G + GATA VTLEPC+H GR+ PCA ++ G+
Sbjct: 2 LAEGWHRGAGTPHAEAAALADARARGVDVAGATAVVTLEPCAHTGRTGPCADALVAAGVA 61
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
VV+ VDDP+ +G + + +V + +EG+ L +LT ++TLK A
Sbjct: 62 EVVLAVDDPNPVATGGAHRLRAAGVRVVRGLRAAEGEELLRVWLTAVRRGTPYVTLKTAT 121
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
+ D + S ITG ++ H +RA+ DAI+VG GT+LADDPELT R+ G
Sbjct: 122 TLDGYVAAQDGTSRWITGPAAREHAHRVRAEVDAIVVGTGTLLADDPELTARVRGHGPSH 181
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+L+ P+ +V A R + +++ RD+ ++
Sbjct: 182 DAAHDAASAARLAEH---------QPLRVVVGLRGIPPAARVRGEGSELVHVLTRDVGEV 232
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLE 335
L L R V +LVEGG +A +F+ + VD + Y + +++G G +
Sbjct: 233 LERLAEREVRHVLVEGGPTLATAFLAAGAVDELHAYVAPVLLGNGRRAVDGLGVATIADA 292
Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
F V G D +
Sbjct: 293 HRFRTVEVRRVGDDALVVSRK 313
>gi|289807868|ref|ZP_06538497.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 111
Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 65/100 (65%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV +
Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMH 101
>gi|254442809|ref|ZP_05056285.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257117|gb|EDY81425.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 151
Score = 115 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 1 MPVSSFDARFMSAALRFSRWH-VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M D FM AA+ + TS NP V +IV+DG ++ +G G PHAE QA
Sbjct: 1 MEQIQRDESFMRAAVCEAVRGDAVKTSPNPRVGAVIVEDGEIVAKGHFERDGGPHAERQA 60
Query: 60 LEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
LE G + + GA YVTLEPCS GR+ C I+E GIRRVVV DP G G++
Sbjct: 61 LEALGRKPKEGAVIYVTLEPCSTQGRTGACTDAILEAGIRRVVVGASDPTEEHRGNGVRV 120
Query: 119 LSQKGIIV 126
L G+ V
Sbjct: 121 LEAAGVEV 128
>gi|218673496|ref|ZP_03523165.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli GR56]
Length = 419
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 135/234 (57%), Positives = 170/234 (72%), Gaps = 1/234 (0%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79
H+G T+TNPSV CLIVKDG+ +G+ VTA GG PHAE QAL EAG+ ARGATAYVTLEPC
Sbjct: 1 RHLGRTATNPSVGCLIVKDGVTVGQAVTALGGRPHAEPQALAEAGQLARGATAYVTLEPC 60
Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFL 138
SH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L GI VD + ++EG+ L
Sbjct: 61 SHHGKTPPCAEALIASGVARVVISVTDPDPRVSGRGVSMLRDAGIEVDAGVLQAEGRRSL 120
Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
YLTRQ + R ++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIG
Sbjct: 121 AGYLTRQTKNRPYVTLKLAVSADGMIGRKGEGQVAITGPEARAEVQALRAETDAILVGIG 180
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
T ++DDP LT R GL+ SP+RI+LDP L L SK++ TA PVI+V D
Sbjct: 181 TAISDDPLLTVRTPGLEAQSPVRIVLDPSLALPLTSKLVATARDVPVIVVASED 234
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ ++IG GI SP
Sbjct: 330 YCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPVIIGADGIESP 389
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L+ + F + FG+D EY ++
Sbjct: 390 LDATDIPSGFAHMGTRIFGADRLDEYERES 419
>gi|307111161|gb|EFN59396.1| hypothetical protein CHLNCDRAFT_137887 [Chlorella variabilis]
Length = 181
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
V+ D M AL + +G T NP+V C+IV G V+G G G PHAEV AL
Sbjct: 27 VTEADRLHMRRALELAARGLGATYPNPAVGCVIVDASGRVLGEGFHPRAGMPHAEVYALR 86
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG A GATAYVTLEPC+H+GR+PPC++ ++ G+ RVVV DP+ V G G++ L
Sbjct: 87 AAGRAAAGATAYVTLEPCNHFGRTPPCSRALVAAGVSRVVVGCTDPNPLVGGCGVKTLRD 146
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
GI+ E + L+ ++++++
Sbjct: 147 AGIVAAVGCEQQACYQLNEEFMVRMQEQA 175
>gi|84387508|ref|ZP_00990526.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
12B01]
gi|84377556|gb|EAP94421.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus
12B01]
Length = 145
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL +
Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNSYDD 60
Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L
Sbjct: 61 GLDGEMEGITAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120
Query: 122 KGIIV 126
G+ V
Sbjct: 121 HGVKV 125
>gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor]
Length = 522
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 85/313 (27%), Positives = 137/313 (43%), Gaps = 22/313 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAE 56
+ DA + A + GLTS +P+ C+I + D V+G G G P AE
Sbjct: 52 ANDALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAE 111
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+ A +EAGE A G+TAY+ LEP +G + +++ GI RVVV + P + G+ +
Sbjct: 112 LLAAQEAGEHACGSTAYLNLEPGDCFGDNTAVGS-LVQAGITRVVVGLRHPLKHLRGKAI 170
Query: 117 QWLSQKGIIVDRMMES-----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
Q L +GI VD + E L R LK A++ D I
Sbjct: 171 QALRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTADGKIA 230
Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
+ + I+G S+ +V LR +SDA++VG TV DDP LT R H P+RI++
Sbjct: 231 ASSGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTARHVK--GHVPVRIVMS 288
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
L ++ + ++ K + ++ D + + +++ R
Sbjct: 289 QSLNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPRNVMSYCYDR 348
Query: 286 GVTSLLVEGGAAV 298
G ++L E G +
Sbjct: 349 GYLAVLWECGGTL 361
>gi|54303332|ref|YP_133325.1| putative riboflavin biosynthesis protein RibD [Photobacterium
profundum SS9]
gi|46916762|emb|CAG23525.1| Putative riboflavin biosynthesis protein RibD [Photobacterium
profundum SS9]
Length = 141
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 77/131 (58%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
FM AL+ S+ + + NP V C++VK+ ++ G T G HAEVQAL
Sbjct: 3 EIFMLRALQISKSALPDCTPNPPVGCVLVKNDFIVSEGFTQAIGGNHAEVQALNSYSGST 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
TAYVTLEPCS+ GR+P CA +I GI+RVVV + DPD R SG+G++ L Q G+ V+
Sbjct: 63 ENITAYVTLEPCSYVGRTPACANTLINSGIKRVVVSMLDPDPRNSGKGVKILEQAGVQVE 122
Query: 128 RMMESEGKIFL 138
+ ++ I
Sbjct: 123 IGLCNDQVIHF 133
>gi|219557312|ref|ZP_03536388.1| putative bifunctional riboflavin biosynthesis protein RIBG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis T17]
Length = 237
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 82/204 (40%), Positives = 105/204 (51%), Gaps = 5/204 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T NP V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYG++PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
+ V + E L +L +Q H+T K A S D A S I+ ++
Sbjct: 126 LQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARL 185
Query: 182 QVHLLRAQSDAILVGIGTVLADDP 205
+H RA +DAILVG GTVLADDP
Sbjct: 186 DLHRRRAIADAILVGTGTVLADDP 209
>gi|212716410|ref|ZP_03324538.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
16992]
gi|212660663|gb|EEB21238.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM
16992]
Length = 310
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
++M+ AL + G + NP V ++V+DG ++ G PHAE A + A G
Sbjct: 27 RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 86
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL L + G+
Sbjct: 87 VDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLCILEENGV 146
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
V + ++ + + +
Sbjct: 147 EVVYDVMRAECDAINRHFFHYITTGMPYIV 176
>gi|299142094|ref|ZP_07035228.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
gi|298576556|gb|EFI48428.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
Length = 122
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
+M L+ + NP V +IV +IG G G HAEV A
Sbjct: 3 HEYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPE 62
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q +
Sbjct: 63 DEKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122
>gi|145346176|ref|XP_001417569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577796|gb|ABO95862.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 147
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 11 MSAALRFSRWHVGLT-STNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
M AL + NP V C++V ++ +V+G G G PHAEV AL AGE A
Sbjct: 1 MRRALEVAATATTAETFPNPRVGCVVVDAREDVVVGEGYHPKAGEPHAEVFALRAAGELA 60
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
RGATAYVTLEPC+HYGR+PPCA+ +++ G+ RVVV DPD RVSG G+Q L GI V
Sbjct: 61 RGATAYVTLEPCNHYGRTPPCARALVDAGVARVVVGFIDPDPRVSGGGIQTLLDAGIEVA 120
Query: 128 RMM 130
Sbjct: 121 VGC 123
>gi|34558306|ref|NP_908121.1| putative riboflavin-specific deaminase [Wolinella succinogenes DSM
1740]
gi|34484025|emb|CAE11021.1| PUTATIVE RIBOFLAVIN-SPECIFIC DEAMINASE EC 3.5.4 [Wolinella
succinogenes]
Length = 344
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 74/377 (19%), Positives = 131/377 (34%), Gaps = 74/377 (19%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64
+M AL+ + + GLT NP+V L++ + G ++ G PHAEV AL+E
Sbjct: 9 LHEFYMELALQEAWKYQGLTLPNPAVGALLLGEHGEILSIAAHQRAGSPHAEVLALQEGY 68
Query: 65 EEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G T YVTLEPC+HYG++PPC++ +
Sbjct: 69 ARLSGNADILALHDSSQIHDYLLAHSQGIFRHCTLYVTLEPCNHYGQTPPCSELLARLKP 128
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ V++ DP+ + SG G+ L + GI V ++ E L R ++ K A
Sbjct: 129 KSVIIGKRDPNPKASG-GIDRLKEAGIAVHTGIKEEACHKLLLPFERLQKQGYFRFFKWA 187
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+ + I+ S+ VH LR + D +++ T AD+P L RL +
Sbjct: 188 QRLNGTLS-----PGIISSSSSRAHVHALRDRIDLLVISGKTARADNPWLDARLIEGRAP 242
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ + P + ++ +
Sbjct: 243 DVLILTRSPE-RFPRSLRLFSVPHRRVRVS------------------------------ 271
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ ++ EGGA + + +S +D+ + Y + +
Sbjct: 272 -SNLEALLDYRCVMAEGGAELFETLFDS--MDAFLSYIAPSLERGE------VSLASRVP 322
Query: 338 FMCVRRDYFGSDVCLEY 354
+ D+ Y
Sbjct: 323 LSLLHSHPIEEDLVAWY 339
>gi|90578371|ref|ZP_01234182.1| putative riboflavin deaminase [Vibrio angustum S14]
gi|90441457|gb|EAS66637.1| putative riboflavin deaminase [Vibrio angustum S14]
Length = 146
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 68/126 (53%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + FM AL S + NP V C++VK+G ++ G T G HAE AL
Sbjct: 1 MNHDFQEQAFMIRALLLSHQSLPACRPNPPVGCVLVKEGEIVSEGFTQPPGQHHAEAMAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L
Sbjct: 61 ANYDGSFTDVTAYVTLEPCSFVGRTPSCAHTLVELGIKKVVVATLDPDSRNSGKGIAVLK 120
Query: 121 QKGIIV 126
+ GI V
Sbjct: 121 EAGIEV 126
>gi|218676953|ref|YP_002395772.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
gi|218325221|emb|CAV27160.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32]
Length = 145
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61
+ ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL
Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L
Sbjct: 61 ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120
Query: 122 KGIIV 126
G+ V
Sbjct: 121 HGVKV 125
>gi|86145701|ref|ZP_01064030.1| putative riboflavin deaminase [Vibrio sp. MED222]
gi|85836400|gb|EAQ54529.1| putative riboflavin deaminase [Vibrio sp. MED222]
Length = 145
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61
+ ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL
Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L
Sbjct: 61 ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120
Query: 122 KGIIV 126
G+ V
Sbjct: 121 HGVKV 125
>gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis 053442]
gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis 053442]
Length = 305
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 11/301 (3%)
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI
Sbjct: 2 AQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKT 61
Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+ + E + + +L+R +R + LK AVS D ++ S ITG ++ V +
Sbjct: 62 ECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQV 121
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++
Sbjct: 122 LRAESCAVLTGIGTVLADNPRLNVRAFPT-LRQPARIVLDSRLRLPLDSHLLTDGQSPTY 180
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300
I E D+ L +I I+ DL L+ +L G ++VE G+ +
Sbjct: 181 IATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTS 240
Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+F+ L D I+LYRS ++G G +P + V + G D+ +
Sbjct: 241 AFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKTVFRK 300
Query: 357 K 357
Sbjct: 301 N 301
>gi|217076038|gb|ACJ86378.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
mesenteroides]
Length = 135
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A + + T NP +IVKDG VI G G HAE+ A
Sbjct: 3 DLTWMKLAADEAIRAMPYQTFENPRGGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62
Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ GAT YVTLEPCS +G+ CA I G++RVVV DP+ + +G++ L G
Sbjct: 63 KTEFLGATLYVTLEPCSTHGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNAKGIKMLGSPG 122
Query: 124 IIVDRMMESEGK 135
I VD + E K
Sbjct: 123 ISVDVLNTYENK 134
>gi|148975779|ref|ZP_01812610.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
bacterium SWAT-3]
gi|145964852|gb|EDK30104.1| Probable riboflavin biosynthesis protein RibD [Vibrionales
bacterium SWAT-3]
Length = 141
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 71/121 (58%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+ ++M AL+ S + NP V C++VK+ V+ G T G HAEV+AL
Sbjct: 1 MNQQYMLQALQASHQALPDCQPNPPVGCILVKNDKVVSVGYTQKVGGNHAEVEALNHYDG 60
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G+
Sbjct: 61 DMEGVTAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHGVK 120
Query: 126 V 126
V
Sbjct: 121 V 121
>gi|197106417|ref|YP_002131794.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
HLK1]
gi|196479837|gb|ACG79365.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum
HLK1]
Length = 143
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/116 (46%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M A+ +R VG T NP+V C+I+KDG V+G T GG PHAE AL +AGE ARGA
Sbjct: 1 MRRAIALARPQVGRTGENPAVGCVILKDGRVLGEAATGDGGRPHAEELALAQAGEAARGA 60
Query: 71 TAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
TA+VTLEPC+ + C++ + G+ RVVV DP V +G G L GI+
Sbjct: 61 TAFVTLEPCAERSSGAASCSERLAAAGMSRVVVACADPSVFAAGGGAARLRAAGIV 116
>gi|27365734|ref|NP_761262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
vulnificus CMCP6]
gi|27361883|gb|AAO10789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
vulnificus CMCP6]
Length = 141
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 71/119 (59%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
M AL S++ + NP V C++VK+G ++ G T G HAEVQALE +
Sbjct: 3 EEHMLRALEVSKFALPNCLPNPPVGCVLVKEGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD R GRG+Q L Q G+ V
Sbjct: 63 DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDPRNGGRGIQILEQAGVQV 121
>gi|229589688|ref|YP_002871807.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
SBW25]
gi|229361554|emb|CAY48431.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens
SBW25]
Length = 156
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 69/126 (54%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
MP + + FM AL R + NP V C++V+D +VI +G T G HAE AL
Sbjct: 1 MPNTLSNTDFMQLALAQGRLALPECLPNPPVGCVLVQDNMVISQGYTQAPGFHHAEAMAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E TA+VTLEPCS +GR+P CA +I G+ V V + DPD R SG G++ L
Sbjct: 61 SRLTNECSAVTAFVTLEPCSFHGRTPSCALALINSGVETVFVGLLDPDPRNSGAGIRMLR 120
Query: 121 QKGIIV 126
GI V
Sbjct: 121 DAGITV 126
>gi|229526073|ref|ZP_04415477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
cholerae bv. albensis VL426]
gi|229336231|gb|EEO01249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
cholerae bv. albensis VL426]
Length = 141
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/119 (47%), Positives = 72/119 (60%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
M AL S++ + NP V C++VK G ++ G T G HAEVQALE +
Sbjct: 3 EEHMLRALEVSKFALPNCLPNPPVGCVLVKGGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD+R SGRG+Q L Q GI V
Sbjct: 63 DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDLRNSGRGIQILEQAGIQV 121
>gi|114571043|ref|YP_757723.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
gi|114341505|gb|ABI66785.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10]
Length = 207
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 3 VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S+ D AR+M A+ +R G T+ NP+V C++V+DG +I G T GG PHAE AL+
Sbjct: 1 MSAIDDARYMDLAVALARAQQGRTAPNPAVGCVLVRDGRIIATGATQDGGRPHAERVALD 60
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
AG EA GATAYVTLEPC+H+G++PPCA +I+ GI R V+ D +VSGRGL L+
Sbjct: 61 AAGAEAAGATAYVTLEPCAHHGQTPPCADGLIQAGIERAVIACGDRFEQVSGRGLAILAA 120
Query: 122 KGIIV 126
G+ V
Sbjct: 121 AGMTV 125
>gi|319957427|ref|YP_004168690.1| riboflavin biosynthesis protein ribd [Nitratifractor salsuginis DSM
16511]
gi|319419831|gb|ADV46941.1| riboflavin biosynthesis protein RibD [Nitratifractor salsuginis DSM
16511]
Length = 336
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 88/379 (23%), Positives = 142/379 (37%), Gaps = 75/379 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + D +M AL + + GLT NP+V C +VK+G ++ G HAE+ A+
Sbjct: 1 MKI--DDRFYMQLALGEAWRYQGLTYPNPAVGCCVVKEGRILAVEAHHKAGESHAELWAM 58
Query: 61 EEAGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFII 93
A E RG + YVTLEPC+H+GR+P CA +
Sbjct: 59 LAAYEALEGREAAVDSADADAVYDFLQTVPEELFRGVSLYVTLEPCAHHGRTPSCAWALS 118
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
+ RVVV DP G GL+ L+ GI V + E L ++R+ +
Sbjct: 119 RFPLHRVVVATADPIPGHGG-GLEILADHGIEVATGVCEEEARELLEPFLI-WQERAFVL 176
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
K+A + + IG ++ S VH LRA D +L+G TV D P L CR
Sbjct: 177 FKLAQTTNGRIG-----GGYLSSPESLEHVHRLRAVVDELLIGGSTVRTDRPTLDCRFVD 231
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
+ + S+ + P+ V++ + +
Sbjct: 232 Q----------KRAPNVCIYSRQNEFDRSIPLFGVSDRQVRITDDIEPLLDRPSF----- 276
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
LLVEGG + + +D ++LY++ + +
Sbjct: 277 ----------------LLVEGGEGMLKAL--QDRIDWLLLYQTPKL------SAHPLSYN 312
Query: 334 LEKNFMCVRRDYFGSDVCL 352
+++ + G D+ L
Sbjct: 313 VDQKLKYLHHASIGVDLIL 331
>gi|291617164|ref|YP_003519906.1| RibD [Pantoea ananatis LMG 20103]
gi|291152194|gb|ADD76778.1| RibD [Pantoea ananatis LMG 20103]
Length = 162
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 70/143 (48%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M AL +SR + NP V C+IV+DG V+ +G T G HAE+ A+ +
Sbjct: 1 MMLALEYSRQALPECRPNPPVGCVIVRDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISEC 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
YVTLEPCS GR+P CA I E + + + +DDP + G G L + GI + R
Sbjct: 61 EIYVTLEPCSFQGRTPSCALTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGIALHRAS 120
Query: 131 ESEGKIFLHAYLTRQVEKRSHIT 153
ES + + ++ + H
Sbjct: 121 ESRRSRNFFSPIWTRLRHKHHFY 143
>gi|89074668|ref|ZP_01161133.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
SKA34]
gi|89049606|gb|EAR55166.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp.
SKA34]
Length = 146
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 67/126 (53%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M + FM AL S + NP V C++VK+G ++ G T G HAE AL
Sbjct: 1 MDHDFQEQAFMIRALLLSHQSLPDCRPNPPVGCVLVKNGEIMSEGFTQPPGQYHAEAMAL 60
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
TAYVTLEPCS GR+P CA +E GI++VVV DPD R SG+G+ L
Sbjct: 61 ANYHGSFTDVTAYVTLEPCSFVGRTPSCAHTFVELGIKKVVVATLDPDSRNSGKGIAILK 120
Query: 121 QKGIIV 126
+ G+ V
Sbjct: 121 EAGVEV 126
>gi|330991420|ref|ZP_08315371.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
gi|329761439|gb|EGG77932.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1]
Length = 339
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 67/310 (21%), Positives = 109/310 (35%), Gaps = 21/310 (6%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE---A 67
AA+ + HVG+T+ NP V C ++ +DG ++ G G PHAE+QA+ +
Sbjct: 15 RAAVDEAARHVGVTAPNPPVGCALLDRDGTILAVGGHHRAGTPHAEIQAINQCRARGLLD 74
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
R TA VTLEPC+H GR+ PC+ + +R V + + DP+ V+G G +L +G V
Sbjct: 75 RAHTAVVTLEPCNHTGRTGPCSHALAATPVRDVWIGLRDPNPHVAGGGAGYLRSQGRSV- 133
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
L + + L ++ +L
Sbjct: 134 ------------HVLQPTGPQAAPRDLCRSLLAPFAHFARTGQPWITVKQAVDATGSMLP 181
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDSKIIKTALLAPVI 246
++ + +R + D +LA
Sbjct: 182 PPGRTTFTAATSLDLAHRLRRATDAVITTGRTIRADRPGLDVRRVPDHTGRAPRVLAICT 241
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
E DD L A + + D + L +L GVT +VE G A+
Sbjct: 242 RTGEVDDAYLTAARNRGFDVRLCTD---IAALPDLLGRAGVTWAMVEAGPALLAELRARG 298
Query: 307 LVDSIILYRS 316
L + +
Sbjct: 299 LWHDWLTITA 308
>gi|268678892|ref|YP_003303323.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
DSM 6946]
gi|268616923|gb|ACZ11288.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum
DSM 6946]
Length = 338
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 78/382 (20%), Positives = 135/382 (35%), Gaps = 76/382 (19%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
V++ D M AL + + LT NP+V ++ D G ++G G G PHAEV AL+
Sbjct: 2 VNALDNALMQKALDAAWHYQVLTFPNPAVGAVVSNDAGEILGMGAHRKAGTPHAEVLALK 61
Query: 62 EAG---------------------------EEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
EA + +VTLEPC H+G++PPC+ I
Sbjct: 62 EAYLTLTHDTRIEALSDSMALHLFLKENHQHLFSNLSLHVTLEPCHHFGKTPPCSSLIEA 121
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
GI+RVV+ D +R G G +L +G+ V E L T + +K I
Sbjct: 122 LGIKRVVIGSYDESLRAKGGG-AYLQSRGVDVSFGCLKEACDTLLTPFTCKEKKEPFIFY 180
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
K+A+S ++ + G + + RL
Sbjct: 181 KLALSANS------------------------------VATGGTITSLESRTMVHRLRDC 210
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
+ + + +LD+++ + +I EN F+ + + +
Sbjct: 211 CDLMVIGGNTVRVDRPTLDARLCEGKAPDILIYSHENTFDRTIPLFQCPSRKVFIEKSLE 270
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
R +++EGGA++ + V+ +++RS + I P
Sbjct: 271 RI--------REYRMVMIEGGASMLKAMEEQ--VEWYLIFRSPHIKEGEEIKLP------ 314
Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356
+ + G D Y
Sbjct: 315 -QGLKEIFSCEIGEDRMSWYRR 335
>gi|224130250|ref|XP_002320789.1| predicted protein [Populus trichocarpa]
gi|222861562|gb|EEE99104.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 13/160 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D +M + +R +G TS +P V C+IVK G PHAEV AL +AG
Sbjct: 29 KDDGFYMRRCVELARKAIGCTSPSPMVGCVIVK------------AGQPHAEVFALRDAG 76
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123
+ A ATAYV+LEPC+HYGR+PPC++ +++ ++ VV+ + DP+ V+ RG+Q L G
Sbjct: 77 DVAENATAYVSLEPCNHYGRTPPCSEVMVKAKLKEVVIGMIDPNPIVATRGVQRLRDAGI 136
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
+V + E K + A++ + + + +TL+ ++S +
Sbjct: 137 DVVVGVEEELCKRLIEAFIHKMLTGKPFVTLRYSLSINGH 176
>gi|114798296|ref|YP_760756.1| riboflavin biosynthesis protein RibD domain-containing protein
[Hyphomonas neptunium ATCC 15444]
gi|114738470|gb|ABI76595.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Hyphomonas neptunium ATCC 15444]
Length = 217
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 4/214 (1%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
K ITLKIA S D I +A S IT S+ + H +RA++DAI+VGIGT LADDP
Sbjct: 1 MKNLRITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPL 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT R L P+RI+ D + +L S++ + L V+ VT A
Sbjct: 61 LTARTVPLPAKQPVRIVADSNARLPTASRLASSTDLGRVVAVTAGQGSDALAAAGVDIWR 120
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
D + + G+ +LL+EGG+ +A SF+ + LVD I +R+ I+IG G+P
Sbjct: 121 CGNGVRMDAGEFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDGLP 180
Query: 327 S----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ L + + V + G DV Y+
Sbjct: 181 ALGALGLSDLKSAARWRPVATERIGDDVLDTYVR 214
>gi|225350924|ref|ZP_03741947.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158380|gb|EEG71622.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 191
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
++M+ AL + G + NP V ++V+DG ++ G PHAE A + A G
Sbjct: 40 RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 99
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+
Sbjct: 100 ADMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEENGV 159
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
V + ++ + + + K
Sbjct: 160 EVVYDVMRAECDAINRHFFHYITTGMGVRTKC 191
>gi|239621600|ref|ZP_04664631.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515475|gb|EEQ55342.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 320
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64
+M+ AL + G + NP V ++V+D ++ G PHAE A + A G
Sbjct: 37 REYMTQALELAHRGAGWVNPNPLVGTVVVRDSEILAAGYHDRYRGPHAERMAFDYADEHG 96
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+
Sbjct: 97 IDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEETGV 156
Query: 125 IVDRMMESEGKIFLHAYLTRQ 145
V + ++ +
Sbjct: 157 EVVYDVMRAECDAINRHFFHY 177
>gi|75761017|ref|ZP_00741020.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74491503|gb|EAO54716.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 284
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 12/285 (4%)
Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKR 149
+RVV+ D + VSG G + L + I V + + + KR
Sbjct: 1 MXHRKRSKRVVIATLDCNPLVSGNGKRRLEEARIEVTTGVLEAEAVLLNRYFFHYMKTKR 60
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+T+K A+S D I S ITG ++ VH R DAILVG+ TV+AD+P LT
Sbjct: 61 PFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTT 120
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R+ P+R++LD H + S +I L IIV ++ ++ KNI I
Sbjct: 121 RI-PNGGKHPIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQ 179
Query: 270 CDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ + ++ LL+ L + + SL VEGG ++ SF+ + + I+ Y S +IG P+
Sbjct: 180 METKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPT 239
Query: 328 PLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364
K + G D+ + +N CLQEL
Sbjct: 240 LFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARNEVTECLQEL 284
>gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
nagariensis]
gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f.
nagariensis]
Length = 547
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 84/345 (24%), Positives = 131/345 (37%), Gaps = 14/345 (4%)
Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
G+T +P++AC++V DG I G AEV A+ AG ARGATAY+ LE
Sbjct: 1 GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60
Query: 82 YGRSPPCAQFIIECGIRRVVVCV------DDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
+G + R VV + + G S
Sbjct: 61 HGEMAAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFDGDDATSAAAYGAMSACL 120
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
A L R V +R LK A++ D I S ++ S+ V +RA+SDA++V
Sbjct: 121 AANEALLHRSVLRRPLGVLKYAMTLDGKIATNIGHSSWVSSPQSRGLVFEMRARSDAVIV 180
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G TV D+P LT R G H+P RI++ L D+ + L +++
Sbjct: 181 GGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPEDANLWDVTLAPTIVLTQRGARTR 238
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A R + ++ D + + RG E G +A I S +V ++ +
Sbjct: 239 FQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAPTIASGVVHKVMAFV 298
Query: 316 SQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355
+ +IG P+P+ E G D+ +
Sbjct: 299 APKIIGGVRAPTPVGELGFVEMTQAVELSDTSWSQVGPDLMMTGY 343
>gi|299142759|ref|ZP_07035888.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
gi|298575788|gb|EFI47665.1| riboflavin biosynthesis protein RibD [Prevotella oris C735]
Length = 116
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64
+M L+ + NP V +IV +IG G G HAEV A
Sbjct: 3 HEYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPE 62
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+ AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG
Sbjct: 63 DEKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRG 115
>gi|229006420|ref|ZP_04164086.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
gi|228754830|gb|EEM04209.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4]
Length = 278
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 12/279 (4%)
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLK 155
++RVV+ D + VSG G + L + GI V + E L+ Y ++ + +T+K
Sbjct: 1 MKRVVIATLDCNPLVSGSGAKRLQKAGISVTTSVLEEEATALNRYFFHYMKTKLPFVTIK 60
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
A+S D I S ITG +++ VH R DAIL+G+ TV+AD+P LT RL
Sbjct: 61 TAMSLDGKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRL-PNG 119
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR 273
P+RIILD H + L S +I + IIV ++ + + + ++ +
Sbjct: 120 GKHPIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGYESQAVSVLQMKTSQI 179
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+++ LL +L + + SL VEGG +V SF+ ++ + I+ Y S +IG P+
Sbjct: 180 EIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPTMFGGTG 239
Query: 334 L-----EKNFMCVRRDYFGSDVCLEYIGKNL---CLQEL 364
+ G D+ + +N CLQEL
Sbjct: 240 FIKLQDAISLQIQEMKQIGDDIKIVASVRNEVPACLQEL 278
>gi|317053384|ref|YP_004119151.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
At-9b]
gi|316953123|gb|ADU72595.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp.
At-9b]
Length = 144
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 63/114 (55%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
FM AL +SR + NP V C+IV +G+V+ +G T G HAE+ A+
Sbjct: 7 FMLLALEYSRLALPECRPNPPVGCVIVHNGVVVSKGFTQSPGHHHAEIDAISRLTFPMGE 66
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+VTLEPCS+ GR+P CA+ + E R + + ++DP R SG GL+ L G
Sbjct: 67 CDIFVTLEPCSYQGRTPSCARTLAEMKPRHIYIAIEDPHPRNSGEGLRILKNAG 120
>gi|126640314|ref|YP_001083298.1| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978]
Length = 288
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 16/291 (5%)
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+TLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V+ + +
Sbjct: 1 MTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICED 60
Query: 134 GKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
L+ ++ LK+A S D MA S ITG ++ V RA S A
Sbjct: 61 LAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGA 120
Query: 193 ILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
++ GI TV+ DD +L R + P R+ILD +L L +KI++ V+
Sbjct: 121 VITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKILENPETVMVMGP 180
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ L I L T+ + +LVE GA ++ +F+ LV
Sbjct: 181 YRQELADLG--------VIQLEIQPLKTLLQTLSKQYQIYDVLVEAGATLSTAFLQEGLV 232
Query: 309 DSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEYIG 356
D +I Y + ++G+ + + F + D+ L I
Sbjct: 233 DEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRLRLIP 283
>gi|326426566|gb|EGD72136.1| riboflavin biosynthesis protein RibA [Salpingoeca sp. ATCC 50818]
Length = 1091
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+ D FM AL +R NP V C++V+DG VIG G G PHAE++A+ +A
Sbjct: 578 AVDELFMRRALSLARLGRVSAPPNPWVGCVLVRDGHVIGEGYHRRAGMPHAEIEAMADA 636
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
++L L RGV +LVEGGA V SF+ L D + ++ ++G +P +E
Sbjct: 980 MQVLRDLAKRGVLQVLVEGGAQVHSSFVQQGLGDQLAVFVGPKLLGGTAVPWLPDELAST 1039
Query: 335 ---EKNFMCVRRDYF 346
+ + VR + F
Sbjct: 1040 MAHARTYSLVRVETF 1054
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V+A+ GATAYVTLEPC H GR+ PC Q +++ G+ R V+ V DPD RVS RGL
Sbjct: 706 VEAVRAV---LAGATAYVTLEPCHHQGRTGPCDQALVQAGVARTVIAVTDPDERVSARGL 762
Query: 117 QWLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175
+L +G+ V + L YL ++ R +K A+S D + S IT
Sbjct: 763 AFLRSRGVEVATGVCGAEAEALLAPYLHQRRTGRPLCVIKTAISIDGRVACKDATSKWIT 822
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
G +++ + H +RA+S A+L GIGT LAD+P L R
Sbjct: 823 GPLARARAHKMRAESQAVLCGIGTALADNPTLNVR 857
>gi|302868567|ref|YP_003837204.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
gi|302571426|gb|ADL47628.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca
ATCC 27029]
Length = 295
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/117 (45%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M A+ S +G TS NP V C+I+ + G +G G G HAEV AL AG A G
Sbjct: 10 MRQAIILSSLGLGTTSPNPPVGCVILDRHGATVGAGYHRRKGEAHAEVNALSAAGPAALG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
TA VTLEPC+H G +P C Q +I+ GI RVV+ + DP R G G L+ GI V
Sbjct: 70 GTAVVTLEPCNHVGVTPACRQELIDAGIARVVISLIDPTSRGEG-GAAVLTAHGIDV 125
>gi|145637248|ref|ZP_01792909.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittHH]
gi|145269500|gb|EDK09442.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittHH]
Length = 274
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 20/276 (7%)
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
+V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + LK+
Sbjct: 1 MKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKL 60
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
A+S D MA S ITG +++ V +RA+S A+L TV+ADDP L R + E
Sbjct: 61 AMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPE 120
Query: 217 H-----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ P+R+ILD ++ K+ T ++ D F
Sbjct: 121 NLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLTHSPVWLVSSETRDL----TGFPDFCE 176
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+
Sbjct: 177 QIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNAR 236
Query: 326 PS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L + + + G D+ L Y K
Sbjct: 237 GLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 272
>gi|227488843|ref|ZP_03919159.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091265|gb|EEI26577.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 277
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 93/311 (29%), Positives = 126/311 (40%), Gaps = 38/311 (12%)
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL AGE+ARGATAYVTLEPC+H GR+ PC+ ++E GI VV D + G
Sbjct: 1 MALRAAGEDARGATAYVTLEPCNHTGRTGPCSHALVEAGIATVVYLTPDTSTPEAAGGGD 60
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+L G+ V+ + + G L +L Q R T+K+A + D S ITG
Sbjct: 61 YLKSHGVEVEYLPVAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGE 118
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++ H R++ DAILVG GT LAD+P LT R +
Sbjct: 119 TARAYAHRDRSRRDAILVGTGTALADNPSLTARREDGSLYENQP---------------- 162
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
D ++ + +Y L LV +LVEGG
Sbjct: 163 ---------------DKIVFGSRPVPRDYHLYETGFIQVDTLEELVQLPYNDILVEGGPG 207
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLE 353
V + + LVD+I Y + V+G GIP K F G DV +
Sbjct: 208 VLSTLFTNDLVDTIHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVLIV 266
Query: 354 YIGKNLCLQEL 364
CLQ L
Sbjct: 267 LERHGSCLQGL 277
>gi|254292424|ref|YP_003058447.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
baltica ATCC 49814]
gi|254040955|gb|ACT57750.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia
baltica ATCC 49814]
Length = 215
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63
D +M A+ +R +G T+ NP+VAC++V +IG T GG PHAE ALE
Sbjct: 8 EMDKIYMRRAIALARAQLGRTAPNPAVACVLVSGETIIGEAATGDGGRPHAEEIALESLR 67
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G+E ATAYVTLEPC + + VV + G+ L G
Sbjct: 68 GQELSRATAYVTLEPCHSRSNGGAGCSDRLVVSGVKRVVIAQIDPHPTAKDGIAKLKAAG 127
Query: 124 IIV 126
+ V
Sbjct: 128 LDV 130
>gi|103488468|ref|YP_618029.1| riboflavin biosynthesis protein RibD [Sphingopyxis alaskensis
RB2256]
gi|98978545|gb|ABF54696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Sphingopyxis alaskensis RB2256]
Length = 325
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 124/358 (34%), Positives = 164/358 (45%), Gaps = 52/358 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+AA +R ++ NP+V CLIVK V+ RG T GG PH E AL AG
Sbjct: 8 DTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVA 67
Query: 67 ARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
ARGATAYVTLEPC H P C+ +I G+ RVVV V DPD R G G+ L GI
Sbjct: 68 ARGATAYVTLEPCVHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIE 127
Query: 126 VDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V + ++ + + + TRQ R +TLK+A S D I A S ITG ++ H
Sbjct: 128 VTVDVLPADARAAMAPWWTRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGDRARAHGH 187
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L RA +AILVG GT AD P L RL GL++ SP + +L
Sbjct: 188 LERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGA---------------- 231
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + GV SLLVEGGA A +F+
Sbjct: 232 --------------------------APEGWTAVASPDAIEGVDSLLVEGGAGAAAAFLA 265
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLEYIG 356
+ VD ++LYR+ I+IG+G + L + L + + GSD Y
Sbjct: 266 ADRVDRLLLYRAPILIGDG--KAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYER 321
>gi|6572094|emb|CAB63087.1| riboflavin-specific deaminase [Bartonella clarridgeiae]
Length = 227
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 7/222 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R +TLK+A+S DN +G G ++ I+G IS +Q H+LRAQ+D I+VGIGT+LADDP+L
Sbjct: 6 QRCEVTLKMAISADNGVGKKGQSNLKISGEISHSQTHILRAQNDVIMVGIGTILADDPKL 65
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
CRL GL+ SP+R+ILD + ++ LD+K+++TA P ++ + +
Sbjct: 66 DCRLPGLEMRSPIRVILDKNLRIPLDAKVVQTAANIPTWVICGTVLSKKRKKIALEQYGV 125
Query: 268 IYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
C + +L +L R + S+L+EGGA F+N+ VD +I + + I++G
Sbjct: 126 TVCSVEVTNNLIPPLAILRLLYQRKINSVLLEGGAKTGEIFLNASCVDRLICFYAPIILG 185
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
+ I +P E YL F + G+D ++ K LC Q
Sbjct: 186 KDRIEAPHFESYLS-EFNKIEMRMLGNDRLYKWRRKILCSQG 226
>gi|315180919|gb|ADT87833.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218]
Length = 189
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P S D +FM A+ + G V ++VKDG +I G G HA
Sbjct: 7 PFSPEDEQFMRRAMALAEQAEAEGEV----PVGAVLVKDGHIIAEGWNRSIGACDATAHA 62
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+Q L +AGE T YVTLEPC
Sbjct: 63 EIQVLRQAGEALHNYRLLETTLYVTLEPCPMC 94
>gi|254459001|ref|ZP_05072424.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
GD 1]
gi|207084272|gb|EDZ61561.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium
GD 1]
Length = 336
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 77/378 (20%), Positives = 135/378 (35%), Gaps = 76/378 (20%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
F++ AL+ + + GLT NP+V C IV ++ G PHAEV AL A +
Sbjct: 7 FFINLALKEAWKYQGLTYPNPAVGCTIVSPKNELLSVEAHKKSGLPHAEVMALRTAYFKL 66
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
R + Y TLEPCSH G++P CA I GI++V
Sbjct: 67 TNDSKILELTSSSEIHTFLLNNHNNCFRDISLYTTLEPCSHIGKTPSCASLISALGIKKV 126
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V +D + + G + L + G+ V + + L A + ++ + K A
Sbjct: 127 FVGFNDINE-EASGGTEILKKSGVDVQSSILEKKAYDLIAPFNK-WKEDKFVFFKWAQRL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ I+ S+ VH +R D +++G TV D P L RL + +
Sbjct: 185 NGSTDA-----GTISSIESRINVHKMRNVCDLLVIGGNTVREDRPTLDARLVHGKAPDVL 239
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I F S+ + R++
Sbjct: 240 IISRKKEFDKSIALF---------------------------------GVEGREVFIEDN 266
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ ++++EG + + + +VD + Y + + G+ G +E+ F
Sbjct: 267 FSLLNNYKNIMIEGSSNMFE--LTKDIVDYYLCYLAPTIGGKSGF------EKVEEKFEI 318
Query: 341 VRRDYFGSDVCLEYIGKN 358
+ D D+ + +
Sbjct: 319 LNIDQEDQDIIMWMKREK 336
>gi|152993547|ref|YP_001359268.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
gi|151425408|dbj|BAF72911.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1]
Length = 330
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 107/351 (30%), Gaps = 27/351 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M AL + + LT NP+V ++ DG ++ G HAEV AL +A E
Sbjct: 3 DEFYMQLALDKAWEYQLLTYPNPAVGAVVTLDGTILAVEAHKKAGTSHAEVLALLKAYET 62
Query: 67 ARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+T + ++ + + V + + R +
Sbjct: 63 LSQSTVDFDRMDAQKAHNFLHTIPKDFFSECSIYVTLEPCSHEGRTPACATLLEALNLKK 122
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
V + + LK S + +
Sbjct: 123 VIIGTKDPIEGHGGGMD----------RLKNNTSGVLEEACQALIEPFLIWQERAFVLFK 172
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
L ++ + G + +L + + + +LD + + V
Sbjct: 173 LAQTTNGRIGGGYLSSKSSLKHVHQLREKCDRLLIGGNTVRTDRPTLDCRFTGGTVPDVV 232
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
I ++D F KN + D + + + +LVEGG + ++ +
Sbjct: 233 IYSKKDDIDREMPLFTVKNRTVTVTDKLNFLEKPSF--------VLVEGGEGMLNA-LKE 283
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +D +++Y++ + + ++ N + + D+ L
Sbjct: 284 K-IDWMLIYQTPKL------STNQLSYNIDMNLTFLHQGKKDVDLLLWSRR 327
>gi|260771319|ref|ZP_05880245.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP
102972]
gi|260613635|gb|EEX38828.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP
102972]
Length = 189
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P S D +FM A+ + G V ++VKDG +I G G HA
Sbjct: 7 PFSPEDEQFMRRAMALAEQAEAEGEV----PVGAVLVKDGHIIAEGWNRSIGACDATAHA 62
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+Q L +AGE T YVTLEPC
Sbjct: 63 EIQVLRQAGEALHNYRLLETTLYVTLEPCPMC 94
>gi|213585178|ref|ZP_03367004.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 69
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRM 58
>gi|301055608|ref|YP_003793819.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
[Bacillus anthracis CI]
gi|300377777|gb|ADK06681.1| riboflavin biosynthesis protein contains C-terminal domain of RibD
[Bacillus cereus biovar anthracis str. CI]
Length = 216
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 11/217 (5%)
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+S D S ITG ++ VH R DAILVG+ TV+AD+P LT R+
Sbjct: 1 MSLDGKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRI-PNGGK 59
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-- 275
P+R+ILD H + S +I L IIV + + ++ KNI I + +
Sbjct: 60 HPIRVILDTHLRTPPSSHVITDGLAPTWIIVGTDVNQEKIASYESKNIAIFQMKTKQIEI 119
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
+ +L +L + + SL VEGG V SF+ ++ + I+ Y S +IG P+
Sbjct: 120 QDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFS 179
Query: 335 ----EKNFMCVRRDYFGSDVCLEYIGKNL---CLQEL 364
+ G D+ + +N CLQEL
Sbjct: 180 TLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL 216
>gi|258542930|ref|YP_003188363.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-01]
gi|256634008|dbj|BAH99983.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-01]
gi|256637068|dbj|BAI03037.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-03]
gi|256640120|dbj|BAI06082.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-07]
gi|256643177|dbj|BAI09132.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-22]
gi|256646232|dbj|BAI12180.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-26]
gi|256649284|dbj|BAI15225.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-32]
gi|256652271|dbj|BAI18205.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655328|dbj|BAI21255.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO
3283-12]
Length = 350
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/310 (19%), Positives = 111/310 (35%), Gaps = 33/310 (10%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
A+ + VG T+ NP V C+++ G V+ G HAE A+E+A G R
Sbjct: 22 LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGVVER 81
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
TA VTLEPC+H GR+PPC + ++ ++ V + DP+ V G G L ++GI V+R
Sbjct: 82 IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTVWIGCADPNPHVQGGGAARLEREGITVNR 141
Query: 129 MMESEGKIFLHAYL------TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
+ + +A + + + D+ M + +
Sbjct: 142 LWQCMNAAATYARCRALLAPFAMRMTHGRPWVTVKQALDSKGSMVPPKGQKTFTTPASLR 201
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
+ + +V + D + R+++ + ++ + +
Sbjct: 202 LAHTLRRVTDGIVTATGTVLADRPTLTVRHVEDHPERRRLLVVCGQEKHAPAEWLDSVSA 261
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
A + D+ +L IL +LVE G + +
Sbjct: 262 AFDVRFCP-----------------------DIAQLPDILAQSDALWVLVEAGPTLLEAL 298
Query: 303 INSRLVDSII 312
L D +
Sbjct: 299 KTHNLWDDWL 308
>gi|307083978|ref|ZP_07493091.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
[Mycobacterium tuberculosis SUMu012]
gi|308366380|gb|EFP55231.1| putative cytidine and deoxycytidylate deaminase zinc-binding region
[Mycobacterium tuberculosis SUMu012]
Length = 132
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63
S D M A+ S G T P V +IV +G ++G G T G HAEV AL A
Sbjct: 8 SIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA 66
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G A GA VT+EPC+HYGR+PPC +IE + VV V DP ++G G LS G
Sbjct: 67 GGLAAGAIVVVTMEPCNHYGRTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAG 125
Query: 124 IIVD 127
+ V
Sbjct: 126 LQVR 129
>gi|90579814|ref|ZP_01235622.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
gi|90438699|gb|EAS63882.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14]
Length = 175
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M V D FM A+ + G V ++V +G V+G G G H
Sbjct: 4 MEVEPNDEYFMRRAIELAAKAEEEGEV----PVGAVVVYNGQVVGEGWNRSIGQHDATAH 59
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL +AG+ T YVTLEPC
Sbjct: 60 AEIMALRQAGKVLENYRLIDTTLYVTLEPCPMC 92
>gi|163802511|ref|ZP_02196404.1| molecular chaperone DnaK [Vibrio sp. AND4]
gi|159173812|gb|EDP58627.1| molecular chaperone DnaK [Vibrio sp. AND4]
Length = 178
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
S D RFM A+ + G V ++VKDG +I G + HAE
Sbjct: 6 FSPQDERFMRRAMELAEQAEAEGEV----PVGAVLVKDGKIIAEGWNRSICSHDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+Q L +AGE T YVTLEPC
Sbjct: 62 IQTLRKAGETLGNYRLLDTTLYVTLEPCPMC 92
>gi|160937911|ref|ZP_02085269.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
BAA-613]
gi|158439137|gb|EDP16891.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC
BAA-613]
Length = 262
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 13/259 (5%)
Query: 115 GLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
G + L GI V + E E + H + R + +K A++ D S
Sbjct: 6 GTKILVANGIEVTEGILEEECRELNHVFFHYIKTGRPLVIMKYAMTLDGKTATFAGHSRW 65
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
ITG ++ +VH R++ A++ G+ T+LADD LTCR +P+RII D + D
Sbjct: 66 ITGERARRRVHEDRSRYSAVMCGVETILADDSLLTCR--LPDTRNPVRIICDSQLRTPPD 123
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTS 289
S++ T A I+ T D L + +K DL L L G+ S
Sbjct: 124 SQVAATCSQARTILATCCPDREAWLPYEEKGCEILLLPPREGRVDLNALTERLGQMGIDS 183
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM-----CVRRD 344
+L+EGG+ + S +N +V+ + Y S + G +P+ +E + +
Sbjct: 184 VLLEGGSTLNWSALNQGIVNRVQAYISPGLFGGATAKTPVGGRGVEFPYQGFSLGKTKIT 243
Query: 345 YFGSDVCLEYIGKNLCLQE 363
D+ +E C QE
Sbjct: 244 VLDQDILIEGELM-PCSQE 261
>gi|86152320|ref|ZP_01070531.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315125029|ref|YP_004067033.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85840809|gb|EAQ58060.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|315018751|gb|ADT66844.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 326
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKRQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG +F + +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|153830778|ref|ZP_01983445.1| zinc-binding domain protein [Vibrio cholerae 623-39]
gi|148873734|gb|EDL71869.1| zinc-binding domain protein [Vibrio cholerae 623-39]
Length = 193
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALATQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|217076035|gb|ACJ86376.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc
mesenteroides]
Length = 122
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
D +M A + + T NP V ++VKDG VI G HAE+ A
Sbjct: 3 DLTWMYLAADEAIRAMPYQTFENPRVGAVLVKDGQVITTPYHEKFGEAHAEINAFNRVKN 62
Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ GAT YVT EP S G+ A I G +RVVV DP+ +G+G++ L G
Sbjct: 63 KTEFLGATLYVTFEPNSPQGKVGSWAVQIQNWGQKRVVVGKIDPNPSTNGKGIKMLRSVG 122
>gi|315928823|gb|EFV08089.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 305]
Length = 335
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 73/373 (19%), Positives = 138/373 (36%), Gaps = 78/373 (20%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
+ V D +++ G ++L ++GI V+ + E L L Q + L ++++
Sbjct: 133 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPLKWQKGQFKLFKLALSMNGS 191
Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 PFGK-------IVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARLCKAKAPNLCI 244
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ + + K +
Sbjct: 245 LSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF--------------------------- 277
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
L+ EGG F + +D ++++S + + + + NF +
Sbjct: 278 --------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKPL 320
Query: 342 RRDYFGSDVCLEY 354
R++ GSD Y
Sbjct: 321 YRNFLGSDTYGIY 333
>gi|209694336|ref|YP_002262264.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida
LFI1238]
gi|208008287|emb|CAQ78433.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida
LFI1238]
Length = 177
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 3 VSSFDA-----RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
++ D +M A+ + G V +IV +G +IG G G
Sbjct: 1 MTDLDENKSATFYMQRAIELASIAEGEGEV--PVGAVIVLNGEIIGEGWNRSIGTHDATA 58
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+++AG+ AT YVTLEPC
Sbjct: 59 HAEMMAIKQAGQTVENYRLVNATLYVTLEPCPMC 92
>gi|262190740|ref|ZP_06048969.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
gi|262033384|gb|EEY51893.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93]
Length = 175
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 6 FSAQDEQFMRRAIVLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 62 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 92
>gi|255744661|ref|ZP_05418612.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
gi|262161205|ref|ZP_06030316.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
gi|262168710|ref|ZP_06036405.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
gi|255737692|gb|EET93086.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101]
gi|262022828|gb|EEY41534.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27]
gi|262028955|gb|EEY47608.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1]
Length = 175
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 6 FSAQDEQFMRRAIVLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 62 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 92
>gi|153824574|ref|ZP_01977241.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
gi|149741792|gb|EDM55821.1| zinc-binding domain protein [Vibrio cholerae MZO-2]
Length = 193
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|254225102|ref|ZP_04918716.1| zinc-binding domain protein [Vibrio cholerae V51]
gi|125622489|gb|EAZ50809.1| zinc-binding domain protein [Vibrio cholerae V51]
Length = 193
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|15640880|ref|NP_230511.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121585742|ref|ZP_01675537.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
gi|121728321|ref|ZP_01681351.1| zinc-binding domain protein [Vibrio cholerae V52]
gi|147675155|ref|YP_001216345.1| zinc-binding domain-containing protein [Vibrio cholerae O395]
gi|153802057|ref|ZP_01956643.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
gi|153819008|ref|ZP_01971675.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
gi|153823068|ref|ZP_01975735.1| zinc-binding domain protein [Vibrio cholerae B33]
gi|227081040|ref|YP_002809591.1| yfhC protein [Vibrio cholerae M66-2]
gi|229505525|ref|ZP_04395035.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
gi|229510804|ref|ZP_04400283.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
gi|229517925|ref|ZP_04407369.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
gi|229608545|ref|YP_002879193.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
gi|254848002|ref|ZP_05237352.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
gi|298499008|ref|ZP_07008815.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
gi|9655317|gb|AAF94026.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121550105|gb|EAX60121.1| zinc-binding domain protein [Vibrio cholerae 2740-80]
gi|121629376|gb|EAX61806.1| zinc-binding domain protein [Vibrio cholerae V52]
gi|124122416|gb|EAY41159.1| zinc-binding domain protein [Vibrio cholerae MZO-3]
gi|126510441|gb|EAZ73035.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457]
gi|126519394|gb|EAZ76617.1| zinc-binding domain protein [Vibrio cholerae B33]
gi|146317038|gb|ABQ21577.1| zinc-binding domain protein [Vibrio cholerae O395]
gi|227008928|gb|ACP05140.1| yfhC protein [Vibrio cholerae M66-2]
gi|227012684|gb|ACP08894.1| yfhC protein [Vibrio cholerae O395]
gi|229344640|gb|EEO09614.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9]
gi|229350769|gb|EEO15710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33]
gi|229357748|gb|EEO22665.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286]
gi|229371200|gb|ACQ61623.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236]
gi|254843707|gb|EET22121.1| zinc-binding domain-containing protein [Vibrio cholerae MO10]
gi|297543341|gb|EFH79391.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757]
Length = 193
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|218708682|ref|YP_002416303.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
gi|218321701|emb|CAV17655.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32]
Length = 212
Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ ++ G V ++VKDG VI G G HAE
Sbjct: 24 FSPQDEIFMRRAIEVAKQAEKEGEV----PVGAVLVKDGEVISEGWNRSIGCHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ L +AG+ T YVTLEPC
Sbjct: 80 IETLRKAGQALENYRLLDTTLYVTLEPCPMC 110
>gi|222823268|ref|YP_002574841.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
gi|222538489|gb|ACM63590.1| riboflavin biosynthesis protein [Campylobacter lari RM2100]
Length = 330
Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+M+ A+ + + LT NP+V C+I+ K+G ++ G HAE++A+ +A +
Sbjct: 3 HEFYMNLAIDEAWKYQFLTYPNPAVGCVILDKNGKILSIKAHKEAGKAHAELEAVSKALK 62
Query: 66 E-------------------------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
E +GATAYV+LEPC+H G++PPCA+ E G V
Sbjct: 63 ELDPNLDLPQDANDLHEFICKNHQGLLKGATAYVSLEPCNHQGKTPPCAKLFSELGFSEV 122
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
+ + D +++ G+++L KGI V + + L +
Sbjct: 123 FIAIKDEH-KLASGGVEFLKSKGIKVQIGICEKRAKELLKPFLKWQ 167
>gi|329114509|ref|ZP_08243268.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
gi|326695989|gb|EGE47671.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001]
Length = 350
Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 81/312 (25%), Positives = 121/312 (38%), Gaps = 37/312 (11%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68
A+ + VG T+ NP V C+++ G V+ G HAE A+E+A G R
Sbjct: 22 LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGLVER 81
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
TA VTLEPC+H GR+PPC + ++ ++ + DP+ V G G L +GI V+R
Sbjct: 82 IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTAWIGCADPNPHVQGGGAARLEHEGITVNR 141
Query: 129 MMESE--------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
+ + + L + R R IT+K A+ + T S
Sbjct: 142 LWQCMNAAGTYARCRALLAPFAWRMTHGRPWITVKQALDSKGSMVPPQGQKT-FTTPASL 200
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
H LR +D I+ G GTVLAD P LT R
Sbjct: 201 RLAHALRRVTDGIVTGTGTVLADRPTLTVRHVEDHP------------------------ 236
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+++V + A + C D+ +L IL +LVE G +
Sbjct: 237 ERRRLLVVCGQEKHAPAEWLASVSAAFDVSFCPDIAQLPYILAQSDALWVLVEAGPTLLE 296
Query: 301 SFINSRLVDSII 312
+ L D +
Sbjct: 297 ALKTHNLWDDWL 308
>gi|157415842|ref|YP_001483098.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Campylobacter jejuni subsp. jejuni 81116]
gi|157386806|gb|ABV53121.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Campylobacter jejuni subsp. jejuni 81116]
gi|307748478|gb|ADN91748.1| Putative riboflavin specific deaminase [Campylobacter jejuni subsp.
jejuni M1]
gi|315931666|gb|EFV10627.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 327]
Length = 336
Score = 99.3 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAIAHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI ++ + + EGK L +L Q E+ L ++++
Sbjct: 133 ISVKDE-NKIASGGAEFLKKQGIEIEFDILKEEGKKLLKPFLKWQKEQFKLFKLALSMNG 191
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 SPFGK-------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 244
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 245 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 278
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG +F + +D ++++S + + + + NF
Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 320
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 321 LYRNFLGSDTYGIY 334
>gi|261212078|ref|ZP_05926364.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
gi|260838686|gb|EEX65337.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341]
Length = 170
Score = 99.3 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 1 MP---VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGG 51
MP S D +FM A+ + G V ++V+DG +I G T +
Sbjct: 1 MPESQFSPQDEQFMRRAITLAAQAEAQGEV----PVGAVLVRDGEIIAEGWNCSITHHDA 56
Query: 52 CPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE++ + +AG T YVTLEPC
Sbjct: 57 TAHAEIEVIRKAGNVLNNYRLLDTTLYVTLEPCPMC 92
>gi|258510122|ref|YP_003183556.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257476848|gb|ACV57167.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 161
Score = 99.3 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M + D RFM AL + G V ++V++G ++G G G H
Sbjct: 1 MMEQAADERFMRRALELAEEAARWGEV----PVGAVVVENGRIVGEGFNRRETWRDGTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+EEA G YVTLEPC
Sbjct: 57 AEMLAIEEASRRLGGWRLTNCVLYVTLEPCPMC 89
>gi|218289065|ref|ZP_03493302.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
LAA1]
gi|218240890|gb|EED08068.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
LAA1]
Length = 156
Score = 99.3 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M + D RFM AL + G V ++V++G ++G G G H
Sbjct: 1 MMEQAADERFMRRALELAEEAARWGEV----PVGAVVVENGRIVGEGFNRRETWRDGTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+EEA G YVTLEPC
Sbjct: 57 AEMLAIEEASRRLGGWRLTNCVLYVTLEPCPMC 89
>gi|307720625|ref|YP_003891765.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
16294]
gi|306978718|gb|ADN08753.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM
16294]
Length = 339
Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 77/384 (20%), Positives = 135/384 (35%), Gaps = 78/384 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
M + +M+ A+ + + GLT NP+V C IV + G ++ G PHAEV A
Sbjct: 1 MEI--DHNFYMNLAISEAWKYQGLTYANPAVGCSIVGEHGELLAVEAHHKAGEPHAEVNA 58
Query: 60 LEEAGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFI 92
++ A + + + Y TLEPCSH G++P CA I
Sbjct: 59 IKAAYYKLTQDEKILQLISSSQIHIYLLQNHNNIFKKCSLYSTLEPCSHVGKTPSCANLI 118
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
E GI+ V V V+D + + G L + G + +E + L + +
Sbjct: 119 AELGIKNVFVGVEDFNT-DAANGNTVLEKSGANISLHVEQQKCEDLLFPFKK-FMSDKFV 176
Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
K A + I+ S+ VH +R D +++G TV D P L
Sbjct: 177 FFKWAQRLNGTTDA-----GIISSAESRKNVHAMRDVCDLLVIGGNTVRNDRPTLD---- 227
Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
R++ + + S+ + P+ V + + R
Sbjct: 228 -------ARLVNGKAPDILILSREKEFDTAIPLFHVKNRKVYIESDFSRMN--------- 271
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
++++EG A + ++ +VD + Y + G G +
Sbjct: 272 -------------DYKNIMIEGSAKMYE--LSRDIVDYYLCYLAPAFGGHDGFKN----- 311
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIG 356
+E F + D D+ +
Sbjct: 312 -IEDKFQILNADKEEEDIIMWMKR 334
>gi|261252226|ref|ZP_05944799.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP
102891]
gi|260935617|gb|EEX91606.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP
102891]
Length = 178
Score = 99.3 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D RFM A+ + T V ++VKDG +I G G HAE+Q
Sbjct: 6 FTPQDERFMRRAMELAAHA--ETQGEVPVGAVLVKDGEIIAEGWNESIGQHDATAHAEMQ 63
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
+ +AGE T YVTLEPC
Sbjct: 64 TIRKAGEVLENYRLLDTTLYVTLEPCPMC 92
>gi|304311855|ref|YP_003811453.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
proteobacterium HdN1]
gi|301797588|emb|CBL45809.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma
proteobacterium HdN1]
Length = 171
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S+ D R+M AL +R G V ++V+DG IG G G HAE
Sbjct: 15 FSAEDRRWMERALALARQGAEAGEV----PVGAVVVRDGEAIGEGFNCPIGTHDPTAHAE 70
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL AG GAT YV+LEPC+
Sbjct: 71 ICALRAAGRAIENYRLAGATLYVSLEPCAMC 101
>gi|148981936|ref|ZP_01816576.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
gi|145960698|gb|EDK26041.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3]
Length = 181
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+ D FM A+ ++ G V ++VKDG VI G G HAE
Sbjct: 6 FTPQDEIFMRRAIEVAKKAESEGEV----PVGAVLVKDGEVISEGWNRSIGSHDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V+ L +AG+ T YVTLEPC
Sbjct: 62 VETLRKAGQVLENYRLLDTTLYVTLEPCPMC 92
>gi|262395051|ref|YP_003286905.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
gi|262338645|gb|ACY52440.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25]
Length = 182
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P + D FM A+ + G V ++VKDG +I G G HA
Sbjct: 5 PFTPQDELFMRRAMVLAEQAEAEGEV----PVGAVLVKDGEIIAEGWNRSIGTNDATAHA 60
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+Q L +AG++ T YVTLEPC
Sbjct: 61 EIQTLRKAGQKIENYRLLDTTLYVTLEPCPMC 92
>gi|260551097|ref|ZP_05825301.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
gi|260405864|gb|EEW99352.1| pyrimidine deaminase [Acinetobacter sp. RUH2624]
Length = 286
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 16/283 (5%)
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
+ ++ +++VVV DP+ V+G+G+Q L GI V+ + + L+
Sbjct: 7 MDEPRRVLKHWLKHRLKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQG 66
Query: 142 L-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
++ LK+A S D MA S ITG ++ V RA S A++ GI TV
Sbjct: 67 FLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTV 126
Query: 201 LADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
+ADD +L R + P R+ILD +L L +KI++ V+ + L
Sbjct: 127 IADDCQLNVRSLHNLDIETVAQPKRVILDRRGRLPLTAKILENPETVMVMGPYRQELADL 186
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
I L + + +LVE GA ++ +F+ LVD +I Y +
Sbjct: 187 G--------VIQLEIQPLKTLLQALSKQYQIYDVLVEAGATLSTAFLQEGLVDEMISYVA 238
Query: 317 QIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEYIG 356
++G+ + + F + D+ L I
Sbjct: 239 PTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIRLRLIP 281
>gi|219113687|ref|XP_002186427.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583277|gb|ACI65897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 386
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 49/175 (28%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQAL 60
+S+ D F+ A+ ++ +G T NP+V C++V DG V+G+G G PHAEV AL
Sbjct: 45 LSTEDEGFLRQAIECAKEGLGHTFPNPAVGCVLVNQEDGTVLGKGFHPRAGYPHAEVFAL 104
Query: 61 EEAGEEARGA-----------------------------------------------TAY 73
+A TAY
Sbjct: 105 LQAAGHLEDGVAAGQAVVKKQNEQGAILNEVLRLSQQYTTDDGPEQLFEDTLAKSNVTAY 164
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
VTLEPCSHYG++PPCA + RVVV DP+ +V G G++ L + G+ VD
Sbjct: 165 VTLEPCSHYGKTPPCAVTLALAQASRVVVGFRDPNPKVDGGGVKLLREVGVAVDM 219
>gi|209544013|ref|YP_002276242.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531690|gb|ACI51627.1| riboflavin biosynthesis protein RibD [Gluconacetobacter
diazotrophicus PAl 5]
Length = 366
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/295 (22%), Positives = 109/295 (36%), Gaps = 13/295 (4%)
Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77
+G T+ NP V C I+ G ++ G PHAE AL + E+ R + A VTLE
Sbjct: 30 MGATAPNPPVGCAILDARGEILTVAAHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E+ G++
Sbjct: 90 PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
+ + + + G +T + + + +
Sbjct: 150 --------PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTTFTS 201
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L L + + S + P + + P+++
Sbjct: 202 DAALTLAHRLRRATDAVVTGSGTVLADRPGLDVRRVA-DHADRAARPLVVCDRRGRVPED 260
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ C D+ +L +L GV LVE G A+ + + L D +
Sbjct: 261 WRAAARGRGFDVRTCDDITRLPAMLGADGVLWALVEAGPALLDALRAAGLWDDWL 315
>gi|86145643|ref|ZP_01063973.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
gi|85836614|gb|EAQ54740.1| Cytosine/adenosine deaminase [Vibrio sp. MED222]
Length = 212
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ ++ G V ++VKDG VI G G HAE
Sbjct: 24 FSPQDEIFMRRAIEVAKQAEKEGEV----PVGAVLVKDGEVISEGWNRSIGCHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ L +AG+ T YVTLEPC
Sbjct: 80 IETLRKAGQALENYRLLDTTLYVTLEPCPMC 110
>gi|121612362|ref|YP_001001265.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|121504161|gb|EAQ72749.2| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 81-176]
Length = 336
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 76/374 (20%), Positives = 143/374 (38%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 133 ISVKD-GNKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 SPFGK-------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 244
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 245 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 278
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG +F +D ++++S + + + + NF
Sbjct: 279 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSL-------NDEKNVTIPLNFKP 320
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 321 LYRNFLGSDTYGIY 334
>gi|86152942|ref|ZP_01071147.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|167006160|ref|ZP_02271918.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|85843827|gb|EAQ61037.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni HB93-13]
Length = 326
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 76/374 (20%), Positives = 143/374 (38%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKD-GNKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG +F +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|254509189|ref|ZP_05121287.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
gi|219547894|gb|EED24921.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16]
Length = 187
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D ++M A+ + T V ++VKDG +I G G HAE+Q
Sbjct: 13 FTPQDEQYMRRAMELAAHA--ETEGEVPVGAVLVKDGEIIAEGWNQSIGCHDATAHAEMQ 70
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
+ +AG+ T YVTLEPC
Sbjct: 71 TIRKAGQVLENYRLLDTTLYVTLEPCPMC 99
>gi|262402782|ref|ZP_06079343.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
gi|262351564|gb|EEZ00697.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586]
Length = 170
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + +G V ++V++G +I G T HAE
Sbjct: 6 FSTQDEQFMRRAIELAAQAEALGEV----PVGAVLVQEGKIIAEGWNCSITHQDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++ + EAG+ T YVTLEPC
Sbjct: 62 IEVIREAGKVLSNYRLLDTTLYVTLEPCPMC 92
>gi|289628393|ref|ZP_06461347.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
Length = 60
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
+ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVH 60
>gi|323499761|ref|ZP_08104720.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM
21326]
gi|323315002|gb|EGA68054.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM
21326]
Length = 179
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+ D FM A+ ++ G V ++VKDG +I G G HAE
Sbjct: 6 FTPQDELFMRRAMDLAKQAEAEGEV----PVGAVLVKDGEIIAEGWNQSIGQNDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+Q L +AG+ T YVTLEPC
Sbjct: 62 IQTLRKAGQVLENYRLLDTTLYVTLEPCPMC 92
>gi|217967615|ref|YP_002353121.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
gi|217336714|gb|ACK42507.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724]
Length = 156
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
SS D FM A++ ++ + G V +IV +G ++GRG HA
Sbjct: 4 KFSSIDEYFMHEAIKEAKKALRKGEV----PVGAVIVYNGQIVGRGYNLRESKKNPISHA 59
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+ A+E+A ++ +G T YVTLEPC
Sbjct: 60 EMIAIEKAAKKLKGWRLCNCTLYVTLEPCIMC 91
>gi|262172118|ref|ZP_06039796.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
gi|261893194|gb|EEY39180.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451]
Length = 170
Score = 98.5 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 6 FSAQDEQFMRRAIMLAAQAEEQGEV----PVGAVLVRDGEIIAEGWNCSITHHDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 62 IEVIRKAGKVLSNYRLLDTTLYVTLEPCPMC 92
>gi|264677875|ref|YP_003277782.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
gi|262208388|gb|ACY32486.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
Length = 457
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
FM AL +R G V ++VKDG VIGRG + HAEV AL
Sbjct: 8 HEHFMRQALEQARRAAACGEV----PVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLAL 63
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
EA G T YVTLEPC+
Sbjct: 64 REAARTLGNYRLEGCTLYVTLEPCTMCS 91
>gi|320157222|ref|YP_004189601.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
gi|319932534|gb|ADV87398.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O]
Length = 181
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P S D FM A+ + G V ++VKDG VI G G HA
Sbjct: 7 PFSLQDEVFMRRAIELAAIAESEGEV----PVGAVLVKDGEVIAEGWNQSIGQHDATAHA 62
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+Q L +AG+ T YVTLEPC
Sbjct: 63 EIQTLRQAGQSLGNYRLLDTTLYVTLEPCPMC 94
>gi|27363814|ref|NP_759342.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
gi|27359931|gb|AAO08869.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6]
Length = 181
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P S D FM A+ + G V ++VKDG VI G G HA
Sbjct: 7 PFSLQDEVFMRRAIELAAIAESEGEV----PVGAVLVKDGEVIAEGWNQSIGQHDATAHA 62
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+Q L +AG+ T YVTLEPC
Sbjct: 63 EIQTLRQAGQSLGNYRLLDTTLYVTLEPCPMC 94
>gi|37679027|ref|NP_933636.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
gi|37197769|dbj|BAC93607.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016]
Length = 181
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
P S D FM A+ + G V ++VKDG VI G G HA
Sbjct: 7 PFSLQDEVFMRRAIELAAIAESEGEV----PVGAVLVKDGEVIAEGWNQSIGQHDATAHA 62
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+Q L +AG+ T YVTLEPC
Sbjct: 63 EIQTLRQAGQSLGNYRLLDTTLYVTLEPCPMC 94
>gi|84388906|ref|ZP_00991114.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
gi|84376970|gb|EAP93842.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01]
Length = 194
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+ D FM A+ ++ G V ++VK+G +I G G HAE
Sbjct: 6 FTPQDEIFMRRAIEVAKQAEKEGEV----PVGAVLVKEGEIISEGWNRSIGSHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ L +AG+ T YVTLEPC
Sbjct: 62 IETLRKAGQALENYRLLDTTLYVTLEPCPMC 92
>gi|89073121|ref|ZP_01159660.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
gi|89051074|gb|EAR56531.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34]
Length = 175
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M V D FM A+ + G V ++V +G V+G G G H
Sbjct: 4 MQVEQNDEHFMRRAIELAAKAEEEGEV----PVGAVVVYNGRVVGEGWNRSIGQHDATAH 59
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL +AG+ T YVTLEPC
Sbjct: 60 AEIMALRQAGKVLENYRLIDTTLYVTLEPCPMC 92
>gi|258620044|ref|ZP_05715084.1| zinc-binding domain protein [Vibrio mimicus VM573]
gi|258587777|gb|EEW12486.1| zinc-binding domain protein [Vibrio mimicus VM573]
Length = 178
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 14 FSAQDEQFMRRAIMLAAQAEEQGEV----PVGAVLVRDGEIIAEGWNCSITHHDATAHAE 69
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 70 IEVIRKAGKVLSNYRLLDTTLYVTLEPCPMC 100
>gi|153834810|ref|ZP_01987477.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
gi|148868738|gb|EDL67812.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01]
Length = 177
Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
S D FM A+ + G V ++VKDG +I G + HAE
Sbjct: 6 FSPQDELFMRRAMELAEQAEAEGEV----PVGAVLVKDGEIIAEGWNRSICAHDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+Q L +AG+ T YVTLEPC
Sbjct: 62 IQTLRKAGKALGNYRLLDTTLYVTLEPCPMC 92
>gi|57505260|ref|ZP_00371189.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
RM3195]
gi|57016396|gb|EAL53181.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis
RM3195]
Length = 327
Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+M+ AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA
Sbjct: 3 EFYMNLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKV 62
Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + ATA+VTLEPC H G++PPCA+ ++V
Sbjct: 63 LKPEFNFPKEPNVLHEFILTNHQKLLQNATAFVTLEPCVHQGKTPPCAKLFSTLEFKKVF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR 128
V V D +++ G ++L QKGI+V+
Sbjct: 123 VSVKDE-NQIASGGAEFLRQKGILVEM 148
>gi|315639223|ref|ZP_07894385.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
JV21]
gi|315480549|gb|EFU71191.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis
JV21]
Length = 327
Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 27/147 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+MS AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA +
Sbjct: 3 EFYMSLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKL 62
Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ ATA+VTLEPC+H G++PPCA+ ++V
Sbjct: 63 LKPEFNFPKEPNALHEFILTNHQKLLQNATAFVTLEPCAHQGKTPPCAKLFSTLEFKKVF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR 128
V V D +++ G ++L Q GI+V+
Sbjct: 123 VSVKDE-NQIASGGAEFLRQNGILVEM 148
>gi|269796889|ref|YP_003316344.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
10542]
gi|269099074|gb|ACZ23510.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM
10542]
Length = 372
Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 107/341 (31%), Gaps = 27/341 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
MS AL +R S P C+++ DG V+G T HA QAL EAG A+G
Sbjct: 23 MSRALELAREDRLAASLGPRGGCVLLGADGTVLGEARTDRVARVHATAQALAEAGHRAQG 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
ATA VTLEPC G + + G + V G
Sbjct: 83 ATAVVTLEPCCLGGDARATGPSPLPHGPCAQALVDAGVRRVVVAHLDPDPGTSGGAALLR 142
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ A + + + ++ G G + LRAQ
Sbjct: 143 GAGVEVVAASAAAADEALSLNRAWTFGVQAGRPLVTWVVEGGGSAGGPNP--DLDRLRAQ 200
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
D ++V VLA D L + + + + I +
Sbjct: 201 VDTLVVSTWAVLAHDVSLAALGPDGHPAARQPLRVVVGTRELDPGLPIFDGPGRTLHFA- 259
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
RD L + G +L+ GG A+A F+ + LVD
Sbjct: 260 ----------------------TRDPALTLAAIYDLGGRHVLLSGGTALAAEFLRAGLVD 297
Query: 310 SIILYRSQIVIGEGGI-PSPLEEGYLEKNFMCVRRDYFGSD 349
II + + +GG+ + L G L V D
Sbjct: 298 EIISHVTPEWTSQGGVGATDLGVGELPDTTRLVDVRLVDDD 338
>gi|148925766|ref|ZP_01809454.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845776|gb|EDK22867.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 336
Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 143/374 (38%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 133 ISVKD-GNKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 SPFGK-------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 244
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 245 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 278
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG +F + +D ++++S + + + + NF
Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 320
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 321 LYRNFLGSDTYGIY 334
>gi|213026041|ref|ZP_03340488.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 59
Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL G +
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMGGRQ 56
>gi|163784632|ref|ZP_02179466.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880100|gb|EDP73770.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
Length = 279
Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 80/275 (29%), Positives = 126/275 (45%), Gaps = 10/275 (3%)
Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRS 150
IIE I++VVV DP+ V+G+G++ L + G+ V + E + K + EKR
Sbjct: 4 IIENKIKKVVVATLDPNPLVAGKGIKLLEEHGVEVITGVLEDKAKKLNEDFFVYIKEKRP 63
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
I LK A + D I S ITG ++ H LR ++ A+LVG+GTVL D+P+LT R
Sbjct: 64 FIHLKWAQTIDGKIATFTGSSKWITGEKARKYAHKLRKEASAVLVGVGTVLKDNPQLTVR 123
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV----LALAFRKKNIN 266
+ P+R+++D + K +D KI + V + D +
Sbjct: 124 HIKTDKQ-PVRVLIDKNLKTPIDYKIFDETVKTIVFVGKNADKEKIKNLSKKENIEIIKL 182
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ +LK +L L R + +LVEGG + FI L D I ++ + ++GE GI
Sbjct: 183 PLDKGKFELKDILNELYKRDIIHILVEGGKEIITQFIKENLFDKISVFIAPKIVGEEGIS 242
Query: 327 SP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
S +E+ R DV +E+
Sbjct: 243 SVGKLHIEDINSSIKLNKKRIKSLEEDVLIEFENN 277
>gi|296136215|ref|YP_003643457.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia
K12]
gi|295796337|gb|ADG31127.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia
K12]
Length = 187
Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D FM AL ++ +G V +IVKDG VI G G HAE+
Sbjct: 10 EADRAFMRLALDQAQNAWLLGEV----PVGAVIVKDGKVIATGYNRPIGDHDPTAHAEIV 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL +A T YVTLEPC+
Sbjct: 66 ALRQAAHLLGNYRLPECTLYVTLEPCAMC 94
>gi|295133748|ref|YP_003584424.1| guanine deaminase [Zunongwangia profunda SM-A87]
gi|294981763|gb|ADF52228.1| guanine deaminase [Zunongwangia profunda SM-A87]
Length = 158
Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D +FM A+ + + T ++VKDG +I G + HAE+
Sbjct: 1 MTEDDKKFMRRAIALAEEGM-NTGAGGPFGAVVVKDGEIIAEGWNIVTSSNDPTAHAEIT 59
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A E Y + EPC
Sbjct: 60 AIRRACENLNTFQLENCVLYTSCEPCPMC 88
>gi|218563211|ref|YP_002344991.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|112360918|emb|CAL35719.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|284926817|gb|ADC29169.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 336
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 133 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 SPFGK-------IVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARLCKAKAPNLC 244
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 245 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 278
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 320
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 321 LYRNFLGSDTYGIY 334
>gi|86149383|ref|ZP_01067614.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596073|ref|ZP_01099310.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|85840165|gb|EAQ57423.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88190914|gb|EAQ94886.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni 84-25]
Length = 326
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|32266337|ref|NP_860369.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
51449]
gi|32262387|gb|AAP77435.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC
51449]
Length = 348
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 81/382 (21%), Positives = 137/382 (35%), Gaps = 63/382 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59
M ++S D F+ + L NPSV L+V G ++ + V G PHAEV A
Sbjct: 1 MFLNSSDELFLHYCCSLAWESQTLALPNPSVGALVVDKYGQILSQAVHKVAGSPHAEVLA 60
Query: 60 LEEAGEEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFI 92
++ A G T YV+LEPC+HYG++PPC+Q +
Sbjct: 61 IQAAYHTLSGDDEIVKLHKSKDIHTYLLAHHNGLFKECTLYVSLEPCNHYGKTPPCSQLL 120
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
G RV + +D ++ G +LSQ GI V + + L R +
Sbjct: 121 SSLGFSRVCIATNDTHA-LAAGGANYLSQVGINVCYIQSPTLQHLATHLLMPFEILRKNG 179
Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
+ A+ + + I+ IS+ H R+ D I V T+ D+P+L R
Sbjct: 180 --RFALFKLALRLDGSYTQGRISSDISRQFTHNQRSVCDWICVSGNTLRNDNPQLNARYA 237
Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
+ + + E + +AL+ + +
Sbjct: 238 --------------TLPYNNTHLPQVGIISRTLHRFDEIESSNIALSKNRVHFIN----- 278
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
L +G ++VEGG + HS +D I+++++
Sbjct: 279 ----DLSHFESLQGF--VIVEGGWDLLHSL--KEFIDMILIHQAFACDKGE-----CLTH 325
Query: 333 YLEKNFMCVRRDYFGSDVCLEY 354
L+ +F + G D+ L
Sbjct: 326 TLKTHFKLLHTMRLGEDMALWL 347
>gi|94501251|ref|ZP_01307773.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter
sp. RED65]
gi|94426678|gb|EAT11664.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter
sp. RED65]
Length = 164
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M D FM+ A++ ++ + V ++V DG VIG G H
Sbjct: 1 MSQELQDEHFMALAIQQAKKADALNEV----PVGAVVVLDGEVIGEGYNQPISGCDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV AL +A + A YVT+EPC+
Sbjct: 57 AEVMALRQAAKNVSNYRLVNADLYVTIEPCTMC 89
>gi|150401090|ref|YP_001324856.1| hypothetical protein Maeo_0660 [Methanococcus aeolicus Nankai-3]
gi|150013793|gb|ABR56244.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus aeolicus Nankai-3]
Length = 247
Score = 96.6 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 85/220 (38%), Gaps = 11/220 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ + +S D + S K + ++ ++ + D
Sbjct: 28 PFVISNVGMSLDGKLATIENDSRISGEDDLKRVHKIRKSVDGIMVGIGTVLKDDPRLTVH 87
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN------DDPVLALAFRKK 263
++N +E +P+RI++D + ++ L+++++ + ++ + LA +
Sbjct: 88 KINAKKEDNPIRIVVDSNLRIPLNARVLNDDATTIIATTENMGENKNINEKIRELAKKNI 147
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
I D DL KL+ +L +G+ ++L+EGG + + LVD + +Y + + G
Sbjct: 148 IIIKTGIDKVDLVKLMELLYKKGIKNILLEGGGTLNWGMFENNLVDEVRVYIAPKIFGGK 207
Query: 324 GIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKN 358
G P+ ++ + + +EY K
Sbjct: 208 GAPTFVDGDGFKTVDECIKLALKNCYKLDDGIVIEYTVKK 247
>gi|294340450|emb|CAZ88831.1| tRNA-specific adenosine deaminase [Thiomonas sp. 3As]
Length = 187
Score = 96.6 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D FM AL ++ +G V +IVKDG VI G G HAE+
Sbjct: 10 EADRAFMRLALDQAQNAWLLGEV----PVGAVIVKDGKVIATGYNRPIGDHDPTAHAEIV 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A T YVTLEPC+
Sbjct: 66 AIRQAAHLLGNYRLPECTLYVTLEPCAMC 94
>gi|296114200|ref|ZP_06832855.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
ATCC 23769]
gi|295979276|gb|EFG85999.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii
ATCC 23769]
Length = 357
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 96/311 (30%), Gaps = 18/311 (5%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA--- 67
AA+ + HVG T+ NP V C I+ G ++ G G PHAE +A+ E
Sbjct: 24 RAAVADAVRHVGATAPNPPVGCAILDAAGTILCTGAHHRAGTPHAEARAIALCRERGLIE 83
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
R T VTLEPC+H GR+ PC+Q I+ IR V + DP+ V+G G +L G V
Sbjct: 84 RAHTIVVTLEPCNHTGRTGPCSQAIMHTPIRTVWIGATDPNPNVAGGGADFLRDHGCDVR 143
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + L + +
Sbjct: 144 LLSDMGTYDAAELARLCRGLITPFAHL-----------ARTGRAWVTVKQAVDATGSMRP 192
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+ + + D ++I
Sbjct: 193 PAGRTTFTSATALDLAHRLRRATDAVVTATGTI--TADRPGLDVRRVPDHPGRASRLLVI 250
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T A + + C D++ L +L G LVE G + +
Sbjct: 251 CTTRGQVDEQYATQARARGFDVRTCTDIRHLPDLLGRAGAMWALVEAGPGLLSAIREHAT 310
Query: 308 VDSII-LYRSQ 317
D + +
Sbjct: 311 WDDWLTVTVCP 321
>gi|57238634|ref|YP_179765.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
jejuni RM1221]
gi|57167438|gb|AAW36217.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
jejuni RM1221]
gi|315059073|gb|ADT73402.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Campylobacter jejuni subsp. jejuni S3]
Length = 326
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDARLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|328472552|gb|EGF43415.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 10329]
Length = 199
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ D FM AL + G V ++VKDG VI G + HAE
Sbjct: 31 FTPQDEIFMRRALALAEQAELEGEV----PVGAVLVKDGEVIAEGWNRSICSHDATAHAE 86
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+Q L AG T YVTLEPC
Sbjct: 87 IQTLRNAGAVLENYRLLDTTLYVTLEPCPMC 117
>gi|153837700|ref|ZP_01990367.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AQ3810]
gi|260366298|ref|ZP_05778754.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
gi|260876398|ref|ZP_05888753.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AN-5034]
gi|308095607|ref|ZP_05907165.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
Peru-466]
gi|308126068|ref|ZP_05907632.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AQ4037]
gi|149748895|gb|EDM59726.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AQ3810]
gi|308086905|gb|EFO36600.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
Peru-466]
gi|308092990|gb|EFO42685.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AN-5034]
gi|308106632|gb|EFO44172.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus
AQ4037]
gi|308112714|gb|EFO50254.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030]
Length = 174
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ D FM AL + G V ++VKDG VI G + HAE
Sbjct: 6 FTPQDEIFMRRALALAEQAELEGEV----PVGAVLVKDGEVIAEGWNRSICSHDATAHAE 61
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+Q L AG T YVTLEPC
Sbjct: 62 IQTLRNAGAVLENYRLLDTTLYVTLEPCPMC 92
>gi|54307981|ref|YP_129001.1| putative cytosine/adenosine deaminase [Photobacterium profundum
SS9]
gi|46912407|emb|CAG19199.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
SS9]
Length = 171
Score = 96.2 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D ++M A+ + G V ++V +G V+G G G HAE+
Sbjct: 8 NHDEQYMRRAIELASQAEAEGEV----PVGAVVVYNGQVVGEGWNRSIGQHDATAHAEMM 63
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL +AG+ AT YVTLEPC
Sbjct: 64 ALRQAGKVVQNYRLLDATLYVTLEPCPMC 92
>gi|323492402|ref|ZP_08097552.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
20546]
gi|323313363|gb|EGA66477.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG
20546]
Length = 181
Score = 95.8 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+ D FM A+ ++ G V ++VKDG +I G G HAE
Sbjct: 6 FTPQDELFMRRAMELAQHAEEQGEV----PVGAVLVKDGEIIAEGWNESIGSHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+Q + +AG T YVTLEPC
Sbjct: 62 MQTIRKAGLALENYRLLDTTLYVTLEPCPMC 92
>gi|283957008|ref|ZP_06374480.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Campylobacter jejuni subsp. jejuni 1336]
gi|283791509|gb|EFC30306.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Campylobacter jejuni subsp. jejuni 1336]
Length = 326
Score = 95.8 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 3 KFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNDLSRTYTHKIRAVIDLLVVGGETIRKDHPILDARLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|319955332|ref|YP_004166599.1| guanine deaminase [Cellulophaga algicola DSM 14237]
gi|319423992|gb|ADV51101.1| Guanine deaminase [Cellulophaga algicola DSM 14237]
Length = 158
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
++ D FM A+ + + + P ++VKD +I G HAEV
Sbjct: 1 MTERDEFFMKRAIALAEEGMNANAGGP-FGAVVVKDDEIIAEGYNRVTSTNDPTAHAEVV 59
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ EA ++ T Y + EPC
Sbjct: 60 AIREACKKLNNFELTDCTIYTSCEPCPMC 88
>gi|205355636|ref|ZP_03222406.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346413|gb|EDZ33046.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 326
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 141/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 63 LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 123 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 182 SPFGK-------IVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDTRLCKAKAPNLC 234
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 235 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKIF-KDG-IDMFLIFQSSSL-------NDEKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|118474836|ref|YP_892622.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
fetus 82-40]
gi|118414062|gb|ABK82482.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
fetus 82-40]
Length = 336
Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+M+ A+ + LT NP+V C+I K+G ++ G PHAE+ A++ A
Sbjct: 4 EYYMNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEM 63
Query: 64 --------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G+TAYVTLEPCSH GR+PPCA + E G
Sbjct: 64 KNPAFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGF 123
Query: 98 RRVVVCVDD 106
++V++ D
Sbjct: 124 KQVIIGAID 132
>gi|237808810|ref|YP_002893250.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
gi|237501071|gb|ACQ93664.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
Length = 164
Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
MP S D +M A++ +R G V ++V + VIG G + C H
Sbjct: 1 MPQSEQDIHWMQYAMQLARRAEEAGEV----PVGAVLVLNNEVIGEGWNLSICRHDPCAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +AG+ GAT YVTLEPC
Sbjct: 57 AEIMAIRQAGQNIGNYRLLGATLYVTLEPCIMC 89
>gi|221067789|ref|ZP_03543894.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
gi|220712812|gb|EED68180.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
Length = 463
Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S FM AL +R G V ++VKDG VIGRG + HAEV
Sbjct: 6 SVHEHFMRQALEQARCAAACGEV----PVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVL 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
AL EA G T YVTLEPC+
Sbjct: 62 ALREAARTLGNYRLEGCTLYVTLEPCTMCS 91
>gi|315927631|gb|EFV06962.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 336
Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A +
Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCIILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ E G +++
Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +++ G ++L ++GI V+ + + EGK L +L Q + L ++++
Sbjct: 133 ISVKDE-NKIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
++ +S+ H +RA D ++VG T+ D P L RL + +
Sbjct: 192 SPFGK-------IVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARLCKAKAPNLC 244
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + K +
Sbjct: 245 ILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEAKF-------------------------- 278
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSL-------NDEKNVTIPLNFKP 320
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 321 LYRNFLGSDTYGIY 334
>gi|260776578|ref|ZP_05885473.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607801|gb|EEX34066.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 169
Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ + G V ++VK G ++ G G HAE
Sbjct: 6 FSPQDEFFMRRAMELAAQAEAEGEV----PVGAVLVKGGEIVAEGWNQSIGHHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+Q L +AG+ T YVTLEPC
Sbjct: 62 MQVLRKAGQVLENYRLLDTTLYVTLEPCPMC 92
>gi|319427113|gb|ADV55187.1| CMP/dCMP deaminase zinc-binding protein [Shewanella putrefaciens
200]
Length = 169
Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + D +M A++ + G V ++VKDG I G + H
Sbjct: 1 MEQTELDEYWMQVAMQMAEKAEAAGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ L AG++ AT Y+TLEPC+
Sbjct: 57 AEILCLRSAGKKLENYRLLDATLYITLEPCAMC 89
>gi|84489977|ref|YP_448209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera
stadtmanae DSM 3091]
gi|84373296|gb|ABC57566.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methanosphaera stadtmanae DSM 3091]
Length = 215
Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 4/211 (1%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ L A++ D I L + ++ ++ +
Sbjct: 1 MKPYVLLNSAMTVDGKIATNNSSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
++N + +P RII+D ++ LDSK++ VI+ ++ + + L K N+ I
Sbjct: 61 IHKINCKKSENPTRIIVDSSARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVII 120
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+LK L L G+ S+L+EGG+ + S +L+D + + ++G +
Sbjct: 121 CGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEVSICIGSKILGGYDSKT 180
Query: 328 PLEEGYLEK----NFMCVRRDYFGSDVCLEY 354
++ +K N + + D+ L+Y
Sbjct: 181 FVDGEGFDKNDCINLKIKKVEKIDDDILLKY 211
>gi|329889480|ref|ZP_08267823.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
11568]
gi|328844781|gb|EGF94345.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC
11568]
Length = 208
Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R + LK+A S D I A S ITG ++ Q H LRA DAILVG+ TVLADDPEL
Sbjct: 1 MRPRVILKLATSLDGRIATATGESQWITGPEARLQGHRLRATHDAILVGVETVLADDPEL 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T RL P+R++LD + +K+ +I T P+ +
Sbjct: 61 TVRLPDYAGTHPLRVVLDSRLRTPATAKVASG---NTLIFTTAQPHPI---GQAEVVAVA 114
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP- 326
+ +L L R + S+L+EGG VA SFI + VD+I +R+ +++G G P
Sbjct: 115 PNDGRPAISAVLDALAARNIGSILIEGGGRVAASFIQAGAVDAIEWFRAPMLLGGEGRPC 174
Query: 327 ---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L + F + + G D+ Y
Sbjct: 175 IASLALAKLAHAPKFRRLGVEPVGDDLWERYAR 207
>gi|81298931|ref|YP_399139.1| cytosine/adenosine deaminase-like [Synechococcus elongatus PCC
7942]
gi|81167812|gb|ABB56152.1| Cytosine/adenosine deaminases-like [Synechococcus elongatus PCC
7942]
Length = 161
Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M + + D RFM A+ SR + T C+I ++G +I G T HAE
Sbjct: 1 MSL-AEDERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A + + G T Y + EPC
Sbjct: 60 IAAIRQACQHLQTVDLSGCTLYTSAEPCPMC 90
>gi|56751392|ref|YP_172093.1| hypothetical protein syc1383_d [Synechococcus elongatus PCC 6301]
gi|56686351|dbj|BAD79573.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 161
Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M + + D RFM A+ SR + T C+I ++G +I G T HAE
Sbjct: 1 MSL-AEDERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A + + G T Y + EPC
Sbjct: 60 IAAIRQACQHLQTVDLSGCTLYTSAEPCPMC 90
>gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group]
gi|113536367|dbj|BAF08750.1| Os02g0473000 [Oryza sativa Japonica Group]
Length = 490
Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 7/211 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ LK A++ D I + + ++G S+ +V LR +SDAI+VG TV DDP
Sbjct: 79 FRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPR 138
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT R H P+RI++ L ++ + ++ L K +
Sbjct: 139 LTARHVK--GHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVE 196
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
++ D + + +++ RG S+L E G +A S I++ ++ + + + +IG P
Sbjct: 197 VVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAP 256
Query: 327 SPLEEGY-----LEKNFMCVRRDYFGSDVCL 352
+P+ E + + V + D+ +
Sbjct: 257 TPVGELGMNQMTQAIDLIDVSYEQIDRDMLM 287
>gi|78043781|ref|YP_361468.1| cytidine/deoxycytidylate deaminase family protein
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995896|gb|ABB14795.1| cytidine/deoxycytidylate deaminase family protein
[Carboxydothermus hydrogenoformans Z-2901]
Length = 153
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
+FM+ AL+ + G V ++V +G +IGRG HAE+ A
Sbjct: 2 DHEKFMAEALKEAEKAALQGEV----PVGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVA 57
Query: 60 LEEAGEEARG-----ATAYVTLEPCSHY 82
L+EA + + T YVT+EPC
Sbjct: 58 LKEAASKLKNWQLKDCTLYVTVEPCPMC 85
>gi|330936949|gb|EGH41059.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 169
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D FM AL + +G V ++V++G +IGRG HAE+
Sbjct: 10 SNDQYFMREALALASQGALLGEV----PVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMV 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + G+T YVTLEPCS
Sbjct: 66 AIRDAAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|261417404|ref|YP_003251087.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373860|gb|ACX76605.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 210
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
SS D +FM ALR ++ + + C+IVKDG+VIG+G HAE+
Sbjct: 47 NFSSEDEKFMRMALRQAQIAFDM--KEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEI 104
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A G T YVTLEPC
Sbjct: 105 IAIGTAASTLDNWRLDGCTLYVTLEPCPMC 134
>gi|325685005|gb|EGD27144.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 280
Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 77/287 (26%), Positives = 127/287 (44%), Gaps = 8/287 (2%)
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+TLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+ V + ++
Sbjct: 1 MTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLEVSTGLLAK 60
Query: 134 GKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
Y ++TLK A++ D+M+ ITG + +VH RA A
Sbjct: 61 EASQLNDHYNYFYQTGLPYVTLKQAMTLDHML-AKKGERTAITGAEAWTRVHQERAGYQA 119
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
+L+G+ T + DDP L + + + + LD ++ I+
Sbjct: 120 VLIGLETAIIDDPLLLTSEDLVHPPVRVVLDRRGRLLEHLDLRLFSDKRAETWILTENPA 179
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ + K + K+L +GV S+ EGGA + S + + LV+ +I
Sbjct: 180 FLEQDMPKQVKIFALPDGKISTSIKIL---ADQGVQSVYAEGGAHLQESLLAAGLVNDVI 236
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
Y + +G G + E + V+ + G DV + K++
Sbjct: 237 SYVAPSFLGRGTEAAVAAE---ALDLKDVQTEQVGDDVRIYGRIKDV 280
>gi|313905719|ref|ZP_07839079.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
gi|313469426|gb|EFR64768.1| Cof-like hydrolase [Eubacterium cellulosolvens 6]
Length = 450
Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
++M AA+R ++ G + +IV+DG +I RG HAE+ AL
Sbjct: 299 EKYMRAAIREAKRAASIGEV----PIGAVIVRDGEIIARGYNRRNTDHNTLSHAELNALR 354
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + G T YVT+EPC
Sbjct: 355 KASKKLGDWRLEGCTMYVTMEPCQMC 380
>gi|215693340|dbj|BAG88722.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 80/320 (25%), Positives = 138/320 (43%), Gaps = 16/320 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +A
Sbjct: 84 DDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAR 143
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI
Sbjct: 144 DLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGI 203
Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184
V ME E + + + +
Sbjct: 204 DVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLS--VNGVVVNQIGTGADQPGGYYS 261
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + D +++ +V + P+ II+ L+ + ++ +
Sbjct: 262 QLLKEYDGVIISGISVNMTTLPTSHE---AGAKQPLYIIIAQGGNSQLNIQFLREECASE 318
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGAA---V 298
+++T++ V + ++ D L+ +L IL RG+ S+LV E G +
Sbjct: 319 AVVLTDSPVTVKPPG-----VEVLVLDRMSLEFILEILAQRGLCSVLVDFREAGGDFAYL 373
Query: 299 AHSFINSRLVDSIILYRSQI 318
+F +LV +++ I
Sbjct: 374 LKNFQEEKLVQKVVVELLPI 393
>gi|283953762|ref|ZP_06371293.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
jejuni subsp. jejuni 414]
gi|283794803|gb|EFC33541.1| riboflavin biosynthesis protein RibD, putative [Campylobacter
jejuni subsp. jejuni 414]
Length = 326
Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 70/374 (18%), Positives = 133/374 (35%), Gaps = 79/374 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ + A +
Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGFAHAELNTIAHAFKN 62
Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ + A+VTLEPCSH G++PPCA+ + G ++V
Sbjct: 63 LNPEISLPKEANAMHKFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSDLGFKKVF 122
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
+ V D +V+ G +L ++GI V+ + E EGK L +L Q E+ L ++++
Sbjct: 123 ISVKDE-NKVASGGADFLKKQGIEVEFGILEEEGKKLLKPFLKWQKEQFKLFKLALSMNG 181
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
I +LV G + D + + +
Sbjct: 182 SPFGK--------IVSNELSRTYAHKIRAVIDLLVVGGETIRKDRPILDARLCKAKVPDL 233
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I+ + + + + + ++
Sbjct: 234 CILSRQNLENFDKNIPLFKVPNRQIYTQIPSETKF------------------------- 268
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L+ EGG F + +D ++++S + + + + NF
Sbjct: 269 ---------LMYEGGENFLKIFKDE--MDMFLIFQSSSL-------NDKKNVTIPLNFKP 310
Query: 341 VRRDYFGSDVCLEY 354
+ R++ GSD Y
Sbjct: 311 LYRNFLGSDTYGIY 324
>gi|15668852|ref|NP_247655.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methanocaldococcus jannaschii DSM 2661]
gi|2493563|sp|Q58085|RIB7_METJA RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
reductase; AltName: Full=HTP reductase
gi|1591385|gb|AAB98665.1| riboflavin-specific deaminase (ribG) [Methanocaldococcus jannaschii
DSM 2661]
Length = 224
Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)
Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
+ +EK+ +I + ++ D + I+ +VH +RA D I+VGIGTVL
Sbjct: 1 MVMVMEKKPYIISNVGMTLDGKLAT-INNDSRISCEEDLIRVHKIRANVDGIMVGIGTVL 59
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLA 257
DDP LT + +P+RI++D ++ L+++++ + E + +
Sbjct: 60 KDDPRLTVHKIKS-DRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKI 118
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
L + DLKKL+ IL +G+ S+L+EGG + LVD + +Y +
Sbjct: 119 LEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAP 178
Query: 318 IVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ G P+ ++ + G + LE+ K
Sbjct: 179 KIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK 224
>gi|149190045|ref|ZP_01868322.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
gi|148836075|gb|EDL53035.1| cytosine/adenosine deaminase [Vibrio shilonii AK1]
Length = 178
Score = 93.5 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+ D RFM A+ + G V ++V+ G +I G G HA
Sbjct: 9 EFNDEDRRFMQRAMELANHAESEGEV----PVGAVLVRGGKIIAEGWNQSIGNHDATAHA 64
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+Q + +AG+ T YVTLEPC
Sbjct: 65 EMQVIRKAGQNLENYRLLDTTLYVTLEPCPMC 96
>gi|90410888|ref|ZP_01218902.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
3TCK]
gi|90328101|gb|EAS44412.1| Putative cytosine/adenosine deaminase [Photobacterium profundum
3TCK]
Length = 175
Score = 93.5 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D +M A+ + G V ++V +G V+G G G HAE+
Sbjct: 12 NHDELYMRRAIELASQAEAEGEV----PVGAVVVYEGRVVGEGWNRSIGQHDATAHAEMM 67
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL +AG+ AT YVTLEPC
Sbjct: 68 ALRQAGKVIQNYRLLDATLYVTLEPCPMC 96
>gi|291276854|ref|YP_003516626.1| putative priboflavin-specific deaminase [Helicobacter mustelae
12198]
gi|290964048|emb|CBG39888.1| putative priboflavin-specific deaminase [Helicobacter mustelae
12198]
Length = 345
Score = 93.5 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/379 (15%), Positives = 113/379 (29%), Gaps = 75/379 (19%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
MS ++ + LT NP+VA ++V +G ++ G PHAEV +L+EA
Sbjct: 4 HQLLMSLCIKKAWEFQTLTLPNPAVAAMVVSGEGEILSLCAHQKSGAPHAEVLSLKEAYY 63
Query: 66 EA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
+ + + YVTLEPC+ YG++PPCA+ + GI+
Sbjct: 64 KLTKDENIKNITNSQELHQILRNHHQNLFKDCSIYVTLEPCTCYGKTPPCAEILQSIGIK 123
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158
V++ + + G + L + G V + + L +K+ K+A
Sbjct: 124 SVIIGALEST--KNQGGKEMLEKSGARVTARILEKECQDLLLPFLCYQKKQRFSLFKLAT 181
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
D + E + +
Sbjct: 182 RLDG---------------------------------DYKSGSISCSEAKIFTHNQRSVC 208
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+ + + V + + I
Sbjct: 209 DKIFVSQNTLRNDNPLLDARFCQEPFVFGAPDVGIFSRNPKTLDADARIFSHKREVDFYS 268
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ +G ++EGG + + + +D ++++ S + P E L +
Sbjct: 269 TKKSLPKGFN--IIEGGWKLFLALRDQ--IDMLLVHISPTL---SAKNPPFSEQGLLQGM 321
Query: 339 -----MCVRRDYFGSDVCL 352
+ G D L
Sbjct: 322 EDFSGELLHTQKLGEDALL 340
>gi|226309631|ref|YP_002769525.1| tRNA specific adenosine deaminase [Brevibacillus brevis NBRC
100599]
gi|226092579|dbj|BAH41021.1| putative tRNA specific adenosine deaminase [Brevibacillus brevis
NBRC 100599]
Length = 160
Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + +M A+ +R G + +IV+DG ++GRG T H
Sbjct: 1 MIQENEHDYYMKQAMEEARKAAAIGEV----PIGAVIVRDGEIVGRGYNLRETQKDPTLH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+ EA G G T YVTLEPC
Sbjct: 57 AELIAIREASERLGGWRLIGCTLYVTLEPCPMC 89
>gi|145589597|ref|YP_001156194.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048003|gb|ABP34630.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 152
Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D +FM A+ ++ G V ++V+DG VI H
Sbjct: 1 MSQAELDQQFMQQAIEQAKLAALAGEV----PVGAVVVRDGKVISSAFNKPISTHDPSAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
AE+ AL A + G T YVTLEPC
Sbjct: 57 AEMLALRAAAQSEENYRLPGTTLYVTLEPCVMCS 90
>gi|20806575|ref|NP_621746.1| cytosine/adenosine deaminase [Thermoanaerobacter tengcongensis
MB4]
gi|20515016|gb|AAM23350.1| Cytosine/adenosine deaminases [Thermoanaerobacter tengcongensis
MB4]
Length = 148
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
+FM AL+ ++ +G V +IVKDG +I RG HAE+ A+ E
Sbjct: 4 KFMEEALKEAKKSYELGEV----PVGAVIVKDGEIIARGHNQKESSKDATAHAEIIAIRE 59
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + YVTLEPC
Sbjct: 60 ACRRLGSWRLEDCSLYVTLEPCPMC 84
>gi|224438172|ref|ZP_03659107.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
18818]
gi|313144617|ref|ZP_07806810.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
18818]
gi|313129648|gb|EFR47265.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG
18818]
Length = 330
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 65/380 (17%), Positives = 121/380 (31%), Gaps = 79/380 (20%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61
++S D + + L NPSV +I + +G ++ RGV + G PHAEV A++
Sbjct: 1 MNSSDDLLIKHCCDIAWEAQTLALPNPSVGAIITRENGEILSRGVHSLAGSPHAEVIAIK 60
Query: 62 EAGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIE 94
+A + + YV+LEPC+HYG++PPCA I E
Sbjct: 61 QAYFTLTQDSKILNLESSLELHNFLLHNHNGIFKNHSLYVSLEPCNHYGKTPPCANLIKE 120
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
G +VV+ D ++ G+Q L + GI L EK +
Sbjct: 121 LGFAKVVIGTKDSHS-LASGGMQTLQEAGIHTSLSQIQNEAQKLLLPFEILREKGRFVLF 179
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
KIA+ D V T +
Sbjct: 180 KIAMRLDGSY------------------------------VNGQISAESSRIFTHNQRSV 209
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
++ + +L+++ D + +
Sbjct: 210 CDYLCISGATLRSDNPTLNAR-----------YALPPYDKHKQPKLCLFSKHENNPRFHT 258
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ I +G +++EGG + + + +D ++++++ + +
Sbjct: 259 FRNAEEIESLKGF--VVIEGGLNLLGAL--RKYIDMLLVHKA--FF---CVDLNFTQKSN 309
Query: 335 EKNFMCVRRDYFGSDVCLEY 354
+F G D+ L
Sbjct: 310 AMDFELYHTMNLGKDLALWL 329
>gi|162146949|ref|YP_001601410.1| riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785526|emb|CAP55097.1| Riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 366
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/295 (21%), Positives = 108/295 (36%), Gaps = 13/295 (4%)
Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77
+G T+ P V C I+ G ++ G PHAE AL + E+ R + A VTLE
Sbjct: 30 MGATAPKPPVGCAILDARGEILTVAGHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E+ G++
Sbjct: 90 PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
+ + + + G +T + + + +
Sbjct: 150 --------PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTTFTS 201
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L L + + S + P + + P+++
Sbjct: 202 DAALTLAHRLRRATDAVVTGSGTVLADRPGLDVRRVA-DHADRAARPLVVCDRRGRVPED 260
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ C D+ +L +L GV LVE G A+ + + L D +
Sbjct: 261 WRAAARGRGFDVRTCDDITRLPAMLGADGVLWALVEAGPALLDALRAAGLWDDWL 315
>gi|289192977|ref|YP_003458918.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus sp. FS406-22]
gi|288939427|gb|ADC70182.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus sp. FS406-22]
Length = 220
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 11/222 (4%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+EK+ ++ + ++ D + I+ +VH +RA D I+VGIGTVL D+P
Sbjct: 1 MEKKPYVISNVGMTLDGKLAT-INNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDNP 59
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFR 261
LT + +P+RI++D ++ L+++++ + E + + L
Sbjct: 60 RLTVHKIKS-DRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDGDEEKEKKIKILEDM 118
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + G
Sbjct: 119 GIEVVKCGRGKVDLKKLMEILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFG 178
Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
P+ ++ + G + LE+ K
Sbjct: 179 GKDTPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK 220
>gi|197119924|ref|YP_002140351.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
gi|197089284|gb|ACH40555.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem]
Length = 166
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ D +M A+ +R G + +IVKDG++I RG HAE
Sbjct: 1 MQRDDHYWMGKAIAQARRAEAIGEV----PIGAVIVKDGVIIARGHNLRESNQDPAAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A + GAT YVTLEPC+
Sbjct: 57 MIAIRKAAKKLASWRLTGATLYVTLEPCTMC 87
>gi|313681592|ref|YP_004059330.1| riboflavin biosynthesis protein ribd [Sulfuricurvum kujiense DSM
16994]
gi|313154452|gb|ADR33130.1| riboflavin biosynthesis protein RibD [Sulfuricurvum kujiense DSM
16994]
Length = 336
Score = 93.1 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/348 (13%), Positives = 99/348 (28%), Gaps = 22/348 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
M+ AL + + LT NP+V + + +G V+ G G PHAEV AL +A G
Sbjct: 10 MTLALNAAWEYQLLTFPNPAVGAVCLSDNGTVVSVGTHKRAGGPHAEVYALRDAYTLLSG 69
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
T + I + V + + GI +
Sbjct: 70 DTTIAGCDDSHRIHDYLRTRHNGIFHTVSMAVTLEPCSHSGKTPSCALLIRDLGIKRVYI 129
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ + + + + + ++ + + F+ L
Sbjct: 130 SVKDPNPAAAGGASLLSDAGAEC-VFGIMEEEGEKLLEPFIRWQKSPFVFFKWAQRLDGT 188
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
D + + L R + + P L AP +++
Sbjct: 189 IDNGTISSQSSREHMHALRDRCDLIVIGGNTVRHDRPTLDARLV------DGKAPDVLIY 242
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ L++L + +++EGG ++ + + D
Sbjct: 243 SQMGEFDQSIPLFSVPDRKVYVESSLERLKEYSL------VMIEGGTSMFQA--SQNTCD 294
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ Y + + G P++E + + ++ L K
Sbjct: 295 WYLCYLAPKLGGGLQNMGPIQEDFEVLHAKIT------DNILLWMKKK 336
>gi|119476440|ref|ZP_01616791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
gamma proteobacterium HTCC2143]
gi|119450304|gb|EAW31539.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine
gamma proteobacterium HTCC2143]
Length = 159
Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D +M AA++ ++ +G V ++V + VIG G H
Sbjct: 1 MS-TDTDHHYMEAAIKLAQKAGALGEV----PVGAVVVLNDKVIGEGFNQPISLSDPTAH 55
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ A+++A + + AT YVT+EPC+
Sbjct: 56 AEMVAIKDAAKALQNYRLPEATLYVTIEPCTMC 88
>gi|186681940|ref|YP_001865136.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
gi|186464392|gb|ACC80193.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
Length = 143
Score = 92.7 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68
FM AAL SR + NP V C+ V ++ +G T G HAE AL+ G+
Sbjct: 6 FMLAALAQSRKALPECLPNPPVGCVNVDVQEIVAQGYTQVPGKHHAEADALKRIQGKGFN 65
Query: 69 GATAYVTLEPCSHYGRSPPCAQFI-IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
YVTLEPCS +GR+P CA I +C I + V + DPD R +G+GL L + G V
Sbjct: 66 FLKMYVTLEPCSFHGRTPACALAIAEDCRIHEIYVSILDPDPRNNGQGLDILRKAGKTVY 125
>gi|88813490|ref|ZP_01128725.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
gi|88789280|gb|EAR20412.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231]
Length = 181
Score = 92.7 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
VS D FM+ AL +R G V ++V+ V+G G HAE
Sbjct: 22 VSDQDQAFMARALELARRAQAHGEV----PVGAVVVQRERVVGEGYNRPIATRDPTAHAE 77
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL AG+ T YVTLEPC+
Sbjct: 78 IEALRAAGQALGAYRLPATTLYVTLEPCAMC 108
>gi|312136821|ref|YP_004004158.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
[Methanothermus fervidus DSM 2088]
gi|311224540|gb|ADP77396.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanothermus fervidus DSM 2088]
Length = 227
Score = 92.7 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 85/213 (39%), Gaps = 5/213 (2%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R ++ L A++ D I S L + ++ ++ D
Sbjct: 11 HLRPYVILNAAMTLDGKIATKTYDSKISGEEDLIRVHKLRKECDGIMVGINTVIIDDPRL 70
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
++N +P+R+I D + L+++++ + + + + + ++ +
Sbjct: 71 TVHKINSKPSDNPVRVIADSRARTPLNARVLNNEAPTVIAVSEKAKNEKVEKLKKRAKVL 130
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
++ + DL L+ L G+ L++EGG+ + S ++ LVD + + + +++G
Sbjct: 131 VLGKERVDLVALMEKLKDMGINKLMLEGGSTLNFSMLSKGLVDEVRVCVAPMIVGGKDAK 190
Query: 327 SPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ ++ EK + G D+ LEY
Sbjct: 191 TLVDGPGFEKMDEAIKLKLKKYYTLGKDLILEY 223
>gi|159905708|ref|YP_001549370.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Methanococcus maripaludis C6]
gi|159887201|gb|ABX02138.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus maripaludis C6]
Length = 360
Score = 92.7 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 79/216 (36%), Gaps = 9/216 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ + ++ D + S K + + ++ + D
Sbjct: 140 PYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLTVH 199
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDPVLALAFRKKNI 265
++N + +P+RI++D + K+ L+++ KT + I E ++ + L +
Sbjct: 200 KINASPKDNPLRIVIDSNLKIPLNARVLNNDAKTVIATTTPISYEKEEKIRKLKEMGIMV 259
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
DL+K++ + G+ +L+EGG + L++ + +Y + + G
Sbjct: 260 LRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKIFGGSNS 319
Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
P+ ++ + + + LEY
Sbjct: 320 PTYVDGEGFKNVEECTKLELKKYYPLDDGIVLEYRV 355
>gi|330830279|ref|YP_004393231.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
gi|328805415|gb|AEB50614.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565]
Length = 201
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+ D ++M A+ + G+ V ++V DG V+G G + C HAEV
Sbjct: 33 SQTEQDEQWMRHAMALAARAEGIGEI--PVGAVLVLDGQVVGEGWNRSISEHDACAHAEV 90
Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ AG++ T YVTLEPC
Sbjct: 91 MAIRAAGKQLANYRLLDTTLYVTLEPCCMC 120
>gi|149908700|ref|ZP_01897361.1| putative zinc-binding protein [Moritella sp. PE36]
gi|149808242|gb|EDM68181.1| putative zinc-binding protein [Moritella sp. PE36]
Length = 182
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D R+M A+ + V +IV + +IG G + HAE+ AL E
Sbjct: 25 DERWMQHAIMLAGKA--EAIDEVPVGAVIVLNDKIIGEGWNQSIISHDATAHAEIMALRE 82
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG+ AT YVTLEPCS
Sbjct: 83 AGKTVENYRLIDATLYVTLEPCSMC 107
>gi|240145210|ref|ZP_04743811.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
intestinalis L1-82]
gi|257202673|gb|EEV00958.1| riboflavin biosynthesis protein RibD domain protein [Roseburia
intestinalis L1-82]
Length = 222
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 9/199 (4%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + R + + + +G + Q P+RI+ D
Sbjct: 23 GIRKIAMDHREAAREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLPQTKDPVRIVCDTTL 82
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVG 284
++ L S+I++TA II T D ++K I DLK+L+ L
Sbjct: 83 RIPLKSRIVQTAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FM 339
G+ S+L+EGGA + S + + +V+ + Y + + G SP+ ++ +
Sbjct: 143 DGIESVLLEGGAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLV 202
Query: 340 CVRRDYFGSDVCLEYIGKN 358
R G D+ + KN
Sbjct: 203 SQRVQQVGEDILIAGELKN 221
>gi|297838639|ref|XP_002887201.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333042|gb|EFH63460.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1135
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 16/200 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM AL ++ T P V ++V DG +I RG HAE+ +
Sbjct: 937 TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 994
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
E + R T YVTLEPC G + G ++ D +R+
Sbjct: 995 REGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLFPG 1054
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
G G V F R+ S + S P
Sbjct: 1055 G----EGNGSEVSEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQLRRKKKDKNSDPP 1110
Query: 175 TGFISKNQVHLLRAQSDAIL 194
T + + L + +L
Sbjct: 1111 TPTDHHHHLPKLLNKMHQVL 1130
>gi|71280259|ref|YP_270337.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Colwellia psychrerythraea 34H]
gi|71145999|gb|AAZ26472.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Colwellia psychrerythraea 34H]
Length = 182
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D FM A ++ V ++V G +IG G HAE+ A+
Sbjct: 21 LDLTFMRRAFELAQQA--EQHDEIPVGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIR 78
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AGE T YVTLEPC
Sbjct: 79 QAGEFLNNYRLLDCTLYVTLEPCPMC 104
>gi|21672711|ref|NP_660778.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091137|sp|Q8K9A3|RIBD2_BUCAP RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|21623354|gb|AAM67989.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 217
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 17/216 (7%)
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-- 215
+S D I M S IT S+ V RA+S AIL T+L DDP L R
Sbjct: 1 MSIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKN 60
Query: 216 ---------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
P+RII+D ++ KII+T ++++ D + K+ I
Sbjct: 61 TLSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQT--KEKILLMRLKLDKEIWPENTKQIII 118
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
Y + DL +L L + +L +E G+ ++ F+ L+D II+Y + ++G P
Sbjct: 119 KPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178
Query: 327 SPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKN 358
+ L+ F G D+ ++ KN
Sbjct: 179 LFIFNNQLKLFDCLKFDFKDIRQIGPDIRIKLEPKN 214
>gi|116753917|ref|YP_843035.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanosaeta thermophila PT]
gi|116665368|gb|ABK14395.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanosaeta thermophila PT]
Length = 222
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 9/218 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + A+S D I V I+G +V LRA+SDA++VG+GTV+ADDP L
Sbjct: 1 MRPYVLINSAMSADGKISSFLRRQVRISGSEDLLRVERLRAESDAVMVGLGTVIADDPTL 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR------ 261
+ L+ R + + ++ DS+ + A R
Sbjct: 61 RVKSEALRSWRLERGVPENPLRIVADSRARTPPEARVLGPGCIVAVSRYAPEDRLKELSE 120
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ I I D DL++LL +L RGV L+VEGG + S I LVD I ++ +VIG
Sbjct: 121 RCEIAICGEDRVDLRELLEMLYRRGVRRLMVEGGGTLNWSLIEQGLVDEICVFVGPMVIG 180
Query: 322 EGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEYIG 356
P+ ++ +NF + + L++
Sbjct: 181 GQDAPTLVDGRGFPENFQRLELESAERIDDGLLLKWRV 218
>gi|251794142|ref|YP_003008873.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
gi|247541768|gb|ACS98786.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
Length = 156
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M D +M A+ ++ G + ++VK+G V+GRG T + H
Sbjct: 1 MIREQEDQAWMQLAIEEAKKAEQIGEV----PIGAILVKNGEVVGRGYNLRETNHDPTAH 56
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ A+ EA E T YVTLEPC
Sbjct: 57 AEMVAIREACERLGAWRLLDCTLYVTLEPCPMC 89
>gi|256810581|ref|YP_003127950.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus fervens AG86]
gi|256793781|gb|ACV24450.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus fervens AG86]
Length = 219
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 11/221 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
K+ ++ + ++ D + I+ +VH +RA D I+VGIGTVL DDP
Sbjct: 1 MKKPYVISNVGMTLDGKLATVN-NDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRK 262
LT ++ P+RI++D ++ L+++++ + + D + L
Sbjct: 60 LTIHKIKSDKN-PVRIVVDSKLRIPLNARVLNKDAKTIIATTEDTDEEKEKKINILKEMG 118
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
++ DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + G
Sbjct: 119 VDVVKCGKGRVDLKKLMEILYNKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGG 178
Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
P+ ++ + G + LE+ K
Sbjct: 179 KEAPTYVDGKGFKTADECVKLELKNFYRLGEGIVLEFKVKK 219
>gi|329850574|ref|ZP_08265419.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
C19]
gi|328840889|gb|EGF90460.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum
C19]
Length = 215
Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +TLK+A + D I A S ITG ++ VH LRA DA+LVGI T L DDPEL
Sbjct: 1 MRPQVTLKLATTLDGRIATASGESRWITGEEARRCVHELRAGHDAVLVGIETALKDDPEL 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T RL+G + + P R++LD +L L +K+++TA + P +VT + LA + K I +
Sbjct: 61 TVRLHGYEGYQPTRVVLDSKGRLPLHAKMVQTARIIPTYVVTTGELSGEMLAAQVKAIKV 120
Query: 268 IYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
R + + G+ L VEGG VA +F+ + VD + +RS ++G G P
Sbjct: 121 PSKHQRVDLDAALAALSKVGIERLFVEGGGVVATAFLRAGYVDRLEWFRSSTILGGDGRP 180
Query: 327 SP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
LE F + G D+ Y
Sbjct: 181 VIGHLNLESLDQMFRFTRLGVQAVGDDLWESY 212
>gi|58039442|ref|YP_191406.1| bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
oxydans 621H]
gi|58001856|gb|AAW60750.1| Bifunctional riboflavin biosynthesis protein RibD [Gluconobacter
oxydans 621H]
Length = 349
Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 70/368 (19%), Positives = 122/368 (33%), Gaps = 64/368 (17%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ---------ALEEA 63
A+ + G T+ NPSV C ++ +G ++ GV G PHAE L++A
Sbjct: 23 AISQAVETFGATAPNPSVGCTLLDAEGRILTVGVHPRVGQPHAEAMALAQARAAGVLDQA 82
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-K 122
VTLEPC+H GR+PPC++ + +R V + DP+ + +G +
Sbjct: 83 RVAL------VTLEPCNHTGRTPPCSEALRNSPVREVWIGAADPNPQAAGGAARLREMPA 136
Query: 123 GIIVDR--------MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
G V + + L + +R V R I++K A+ ++ +
Sbjct: 137 GKHVVMLADRPDMTDLARNCRALLAPFASRVVRHRPWISVKQALDENGSMVPPPGQKTFT 196
Query: 175 -TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
++ + VG + + + ++ D H +L D
Sbjct: 197 SPDSLTLAHRLRRATDAIITGVGTVLADRPRFTVRHVADHEGRSPRLLVVCDRHGRLPAD 256
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
T V+ DL + +L RGV ++E
Sbjct: 257 WVSEMTEAGFEVL------------------------TSSDLLSVPAMLAERGVNWAMIE 292
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A+ S + L D L +P + R + L
Sbjct: 293 AGPALLASVAKAGLWDD-WLTI---------HKTPGHKTAGADRIDLKSR----DESPLR 338
Query: 354 YIGKNLCL 361
+ +N C
Sbjct: 339 LLRENACS 346
>gi|20428822|emb|CAD21697.1| hypothetical protein [Azoarcus evansii]
Length = 154
Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
D +M AL +R G P V ++V DG ++GRG G HAEV AL +
Sbjct: 3 DEDYMRVALEQAREA-GSCDEVP-VGAVVVLDGEIVGRGFNQPIGRHDPTAHAEVMALRD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC+ +
Sbjct: 61 AAARLGNYRLPGCELYVTLEPCAMCSGAIM 90
>gi|187735588|ref|YP_001877700.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
BAA-835]
gi|187425640|gb|ACD04919.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC
BAA-835]
Length = 181
Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M + D FM A++ SR + G V ++VKDG VIGRG H
Sbjct: 7 MEMPGSDEWFMRQAMKESRKALVKGEV----PVGAIVVKDGRVIGRGWNQVETLKDATAH 62
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL A E G T YVT EPC
Sbjct: 63 AEMIALTAAQEALGDWRLEGCTLYVTKEPCPMC 95
>gi|291549089|emb|CBL25351.1| Cytosine/adenosine deaminases [Ruminococcus torques L2-14]
Length = 163
Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D ++M AAL+ + +G T + C+IV + +I RG T HAEV
Sbjct: 2 TTDEKYMRAALKQAEKAYNLGET----PIGCVIVHEDKIIARGYNRRNTDKNPLAHAEVA 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + T YVTLEPC
Sbjct: 58 AIKKASKKLGDWRLEECTLYVTLEPCQMC 86
>gi|330504655|ref|YP_004381524.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
NK-01]
gi|328918941|gb|AEB59772.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
NK-01]
Length = 158
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
S D FM AL +R G V ++V+DG V+G+G + HAE+ A+
Sbjct: 10 SRDEHFMRLALAQARLGAGQGEV--PVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + G+T YVTLEPCS
Sbjct: 68 RAAAQSVQNYRLPGSTLYVTLEPCSMC 94
>gi|154148617|ref|YP_001405744.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
BAA-381]
gi|153804626|gb|ABS51633.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC
BAA-381]
Length = 362
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 115/366 (31%), Gaps = 90/366 (24%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA----- 59
D +M+ AL+ + + LT NP+V +++ + G ++ G HAEV A
Sbjct: 2 QDEFYMNLALQKAWKNQLLTYPNPAVGAVVLDNAGKILSIEAHEKAGFAHAEVLAVFRAL 61
Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77
++ ++ +G +VTLE
Sbjct: 62 ENSDRNFTLKFLNSYNKNFNSNFKDTKNLATEFNANFIYDFIIKNHADKLKGGKIFVTLE 121
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PCSH G++PPCA I + V+ D +++ G L++ G+ V +
Sbjct: 122 PCSHLGKTPPCANLISALKFKDCVIGAKDE-NKIASGGAYILNKNGVNVKLGVCKNEAEI 180
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
L + + + + K+A+S + + G
Sbjct: 181 LISPFKKWQKNGKFVFFKLALSANG------------------------------VACGG 210
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+ +L + + + + LD+++I + + I + +
Sbjct: 211 IISNEKSRIFSHKLRAISDLLIIGGNTVRTDRPKLDTRLISSTKNPNIFIFSHLQNFDKT 270
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL----VDSIIL 313
+ + +KL L +++EGG + +D +
Sbjct: 271 IPLFSVPNRNVEIGENIYEKLKNGL-------IMIEGGENFLREIKQNGKICRQIDYFLF 323
Query: 314 YRSQIV 319
+ S
Sbjct: 324 FHSNKF 329
>gi|171463305|ref|YP_001797418.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192843|gb|ACB43804.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 152
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M ++ D ++M A+ ++ G V ++VKDG VI + H
Sbjct: 1 MTQAALDQQYMRMAIEQAQLAAQAGEV----PVGAVLVKDGQVIAKAFNKPIANHDPSAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
AE+ AL EA G+T YVTLEPC+
Sbjct: 57 AEMLALREAALAQENYRIPGSTLYVTLEPCAMCS 90
>gi|160947058|ref|ZP_02094225.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
gi|158446192|gb|EDP23187.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270]
Length = 155
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
S D FM AL+ ++ G + C+IVKD ++ RG G HAE+
Sbjct: 2 SRDEYFMDIALKEAKKAYNKGEV----PIGCVIVKDDKIVSRGHNQVLSKKSGVNHAEII 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +AG+ +VTLEPC
Sbjct: 58 AINKAGQKLGDFRLEDTELFVTLEPCCMC 86
>gi|268593242|ref|ZP_06127463.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
gi|291311137|gb|EFE51590.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
Length = 160
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M D +M A+ + L V ++VKD ++ G + HAE
Sbjct: 1 MTQIEIDEYWMQQAIELALKAQDLGEI--PVGAVLVKDNHLVASGWNRSIIDHNPTAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ AL++AG+E T YVTLEPC CA +I I RVV D
Sbjct: 59 IMALQQAGQELSNYRLLDTTLYVTLEPCI------MCAGAMIHSRISRVVYGAKDFKTGA 112
Query: 112 SGRGLQWLSQKG 123
G L + Q G
Sbjct: 113 CGSYLDIMGQAG 124
>gi|166710619|ref|ZP_02241826.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 80
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PH E
Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHTEFL 63
>gi|34498926|ref|NP_903141.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472]
gi|34104775|gb|AAQ61132.1| probable cytidine deaminase [Chromobacterium violaceum ATCC 12472]
Length = 244
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 2 PVSSFDA-RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PH 54
P + D R+M A ++ G V L+VKDG +IGRG G H
Sbjct: 87 PPDADDRLRYMRQARDLAQQAAAEGEV----PVGALVVKDGEIIGRGYNQPIGRHDPSAH 142
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
AE+QAL +A R G YVTLEPC
Sbjct: 143 AEMQALRDAAARLRNYRLDGCDLYVTLEPCPMCS 176
>gi|15678263|ref|NP_275378.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methanothermobacter thermautotrophicus str. Delta H]
gi|6225947|sp|O26337|RIB7_METTH RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
reductase; AltName: Full=HTP reductase
gi|2621283|gb|AAB84741.1| riboflavin-specific deaminase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 216
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 5/215 (2%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L A++ D I A S + L R ++ + D
Sbjct: 1 MRPYVILNAAMTLDGKIATATGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
R++ +P+R+++D + +++ + + +A ++ + +
Sbjct: 61 VHRVDAAPGDNPVRVVVDSMARTPPHFRVLNDEAPTVIGVSESAPPERVAELRKRAEVVV 120
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
DL LL L G G+ L++EGG+ + +S + LVD + + + +++G +
Sbjct: 121 AGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMIVGGRDART 180
Query: 328 PLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357
++ + R G D+ +EY K
Sbjct: 181 LVDGEGIDEMADAIRLELKRSYTLGEDLIVEYTVK 215
>gi|237752793|ref|ZP_04583273.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
ATCC BAA-430]
gi|229376282|gb|EEO26373.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis
ATCC BAA-430]
Length = 348
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 69/383 (18%), Positives = 124/383 (32%), Gaps = 68/383 (17%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65
A ++ L+ + T NP+VA L++ +G ++ G PHAEV AL++A
Sbjct: 3 HAFYLDLCLQCAWKEQLKTLPNPAVAALVLDENGAIVSLESHKECGKPHAEVLALQKAYA 62
Query: 66 EARG---------------------------ATAYVTLEPCSHYGR-SPPCAQFIIECGI 97
G YVTLEPCS + P +++
Sbjct: 63 ALSGDNAILSLKESQAIHSYLLKNAIPIFKDTMLYVTLEPCSSNKKGKTPSCATLLKTLK 122
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR--QVEKRSHITLK 155
+ V+ + + G Q L + GI V + E E +H + K
Sbjct: 123 PKCVIIATQDCDKSAKGGAQELIEAGICVIKAWEVEALQAIHKQANALLLPFRLLQTQGK 182
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+ + I+ +++ +H R ++D +L+ +V D+P L R L+
Sbjct: 183 FMLFKYASRLDGSIDGGQISTHQAQSLMHDYRTKADVLLISGESVRVDNPRLDTRFATLE 242
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ +P IL + + + I L
Sbjct: 243 QRNPNVAILTRQKDFPKSAPLFEIPNRKVEI----------------------------L 274
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L + G + EGG+ + + +D ++ S L
Sbjct: 275 HSLEQVKALHGF--IFCEGGSGLFKAL--QNSMDLTLVILSPNF-----KRDSNLTMSLN 325
Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
NF + + D+ L I K+
Sbjct: 326 ANFNLLHSEQIADDIFLWLIPKD 348
>gi|85857921|ref|YP_460123.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
gi|85721012|gb|ABC75955.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB]
Length = 187
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
D R+M AL +R G + +IV++ VI R + HAE+
Sbjct: 26 DHDERWMRLALEEARLAASEGEV----PIGAVIVRENEVIARSHNMPVDRHDPTAHAEIL 81
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ EA E+ + G T YVTLEPC
Sbjct: 82 AIREAAEKMKNYRLTGMTLYVTLEPCIMC 110
>gi|329930226|ref|ZP_08283839.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paenibacillus sp. HGF5]
gi|328935248|gb|EGG31729.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paenibacillus sp. HGF5]
Length = 164
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
+ R+M A+ +R +G + +IV+ +IGRG G HAE+
Sbjct: 13 NENHERWMREAIAEARKAEELGEV----PIGAVIVRGDEIIGRGYNLRETTYDGTAHAEM 68
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA YVTLEPC
Sbjct: 69 VAIREASRHLGAWRLLDCRLYVTLEPCPMC 98
>gi|167629244|ref|YP_001679743.1| cytidine and deoxycytidylate deaminase zinc-binding region
protein, putative [Heliobacterium modesticaldum Ice1]
gi|167591984|gb|ABZ83732.1| cytidine and deoxycytidylate deaminase zinc-binding region
protein, putative [Heliobacterium modesticaldum Ice1]
Length = 152
Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +FM AL R G + C+IVKDG VIGRG T HAEV A+
Sbjct: 5 DDKFMGLALEEGRQAYAKGEV----PIGCVIVKDGEVIGRGHNLRETEKNPVAHAEVLAI 60
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
++A G GAT YVT+EPC
Sbjct: 61 QDAANRIGGWRLAGATLYVTVEPCPMC 87
>gi|192359003|ref|YP_001981836.1| Cytidine and deoxycytidylate deaminase zinc-binding region
domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190685168|gb|ACE82846.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Cellvibrio japonicus Ueda107]
Length = 201
Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 2 PVSS--FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
P+S D+ +M A+ + +G V +IV++GI IG G T+
Sbjct: 3 PLSDRQDDSYWMRRAIALASQGEALGEV----PVGAVIVREGIAIGEGFNQPITSRDPSA 58
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ AL +A GAT YVTLEPC+
Sbjct: 59 HAEIVALRQAAAHLQNYRLPGATLYVTLEPCTMC 92
>gi|167723579|ref|ZP_02406815.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
DM98]
Length = 63
Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
Query: 60 LEE 62
L E
Sbjct: 61 LRE 63
>gi|254418857|ref|ZP_05032581.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Brevundimonas sp. BAL3]
gi|196185034|gb|EDX80010.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Brevundimonas sp. BAL3]
Length = 208
Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 8/210 (3%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
+TLK+A S D I A S ITG ++ + H LRA DAILVG+ TVL DDPELT R
Sbjct: 2 RVTLKLATSLDGRIATATGESRWITGEAARLEGHRLRAGHDAILVGVETVLKDDPELTAR 61
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
L G P+R++LD + +K+ +I+T + + A ++
Sbjct: 62 LPGRSVDQPLRVVLDSRLRTPATAKLAGEN----TLILTAVEPQPVGAAQVRRVEAEDED 117
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---- 326
+ +L L GV S+L+EGG VA +F+ + VD + +R+ I++G G P
Sbjct: 118 GRPAIPAVLKALKAAGVDSVLIEGGGQVAAAFLRAGAVDRLEWFRAPILLGGEGRPCVAA 177
Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L + F + G D+ Y
Sbjct: 178 LALAKLADAPKFRRLGVMPVGDDLWERYER 207
>gi|119946930|ref|YP_944610.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
gi|119865534|gb|ABM05011.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37]
Length = 176
Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D ++M+ AL + + V +IVKD ++ G + C HAE+ A++
Sbjct: 14 DQKWMAYALSLADKA--ESFGEIPVGAVIVKDNKIVAEGWNLSIINHNACAHAEIMAIQS 71
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG++ + T YVTLEPC+
Sbjct: 72 AGQKIQNYRLIDCTLYVTLEPCAMC 96
>gi|303280045|ref|XP_003059315.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459151|gb|EEH56447.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 146
Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/135 (42%), Positives = 71/135 (52%), Gaps = 21/135 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-----------RGVTAYGGCPHA 55
D +M AL + G T NP V C G G PHA
Sbjct: 1 DKAYMRRALELAATATGQTHPNPLVGC----------VVVNDDGDVVGEGYHPKAGEPHA 50
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EV AL AG+ ARGATAYV+LEPC H+GR+PPC++ +++ G+RRVVV DPD RVSG G
Sbjct: 51 EVFALRAAGDAARGATAYVSLEPCDHFGRTPPCSRALVDAGVRRVVVGFVDPDPRVSGGG 110
Query: 116 LQWLSQKGIIVDRMM 130
++ L GI V
Sbjct: 111 IRTLLDAGIEVTVGC 125
>gi|330007694|ref|ZP_08306033.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Klebsiella sp. MS 92-3]
gi|328535375|gb|EGF61857.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Klebsiella sp. MS 92-3]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 19 DEYWMRHALTLAKRAWEEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 74
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 75 RQGGLVLQNYRLIDATLYVTLEPCVMC 101
>gi|254479893|ref|ZP_05093141.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [marine gamma proteobacterium HTCC2148]
gi|214039455|gb|EEB80114.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [marine gamma proteobacterium HTCC2148]
Length = 153
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M ++ ++M AL + G + +IVKDG ++G G + H
Sbjct: 1 MTSTAEHEQWMRRALALADRAGNEGEV----PIGAVIVKDGQLLGEGWNSVIAFKDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV A+ +A + G+T YVTLEPC+
Sbjct: 57 AEVVAMRDAAQMTGNYRLPGSTVYVTLEPCTMC 89
>gi|77460805|ref|YP_350312.1| tRNA-adenosine deaminase [Pseudomonas fluorescens Pf0-1]
gi|77384808|gb|ABA76321.1| putative deaminase [Pseudomonas fluorescens Pf0-1]
Length = 165
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D FM AL + +G V ++V+DG +IGRG HAE+
Sbjct: 13 SRDRDFMREALELAAQGAALGEV----PVGAVLVQDGEIIGRGFNCPISTSDPSAHAEMV 68
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G+T YVTLEPCS
Sbjct: 69 AIRAAAQAVDNYRLPGSTLYVTLEPCSMC 97
>gi|308187798|ref|YP_003931929.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
gi|308058308|gb|ADO10480.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1]
Length = 163
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+ D +M AL +R G V ++V++ VIG G G HAE
Sbjct: 1 MKQQDEYWMRHALSLARRAWEQGEV----PVGAVLVQNDRVIGEGWNRPIGQHDPTAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL + G+ T YVTLEPC
Sbjct: 57 IMALRQGGKVLENYRLLDTTLYVTLEPCVMC 87
>gi|262040295|ref|ZP_06013546.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042404|gb|EEW43424.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 19 DEYWMRHALTLAKRAWEEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 74
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 75 RQGGLVLQNYRLIDATLYVTLEPCVMC 101
>gi|238896010|ref|YP_002920746.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae
NTUH-K2044]
gi|238548328|dbj|BAH64679.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 19 DEYWMRHALTLAKRAWEEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 74
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 75 RQGGLVLQNYRLIDATLYVTLEPCVMC 101
>gi|261403958|ref|YP_003240199.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
gi|261280421|gb|ACX62392.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
Length = 164
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
+ R+M A+ +R +G + +IV+ +IGRG G HAE+
Sbjct: 13 NENHERWMREAIAEARKAEELGEV----PIGAVIVRGDEIIGRGYNLRETTYDGTAHAEM 68
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA YVTLEPC
Sbjct: 69 VAIREASRHLGAWRLLDCRLYVTLEPCPMC 98
>gi|197302614|ref|ZP_03167668.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
29176]
gi|197298196|gb|EDY32742.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC
29176]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
D ++M AL+ ++ L + C+IV +G +I RG HAE+ A+++
Sbjct: 22 DEKYMKEALKQAKKAYAL--EETPIGCVIVHEGKIIARGYNRRNTDKSPLAHAEISAIKK 79
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + T YVTLEPC
Sbjct: 80 ASKKLGDWRLEECTLYVTLEPCQMC 104
>gi|322418061|ref|YP_004197284.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
gi|320124448|gb|ADW12008.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18]
Length = 162
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ D +M A+ +R G + +IVKDG VI RG HAE
Sbjct: 1 MKKNDHYWMGKAIDQARKAESIGEV----PIGAVIVKDGAVIARGHNLRESKQDPAAHAE 56
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ +A ++ GAT YVTLEPC+
Sbjct: 57 LIAIRKAAKKLSSWRLTGATLYVTLEPCTMC 87
>gi|78485955|ref|YP_391880.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Thiomicrospira crunogena XCL-2]
gi|78364241|gb|ABB42206.1| tRNA-adenosine deaminase [Thiomicrospira crunogena XCL-2]
Length = 166
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
S D +M+ AL ++ G V ++VKD +I G + HAEV
Sbjct: 11 SEQDIFWMTHALSLAKKAEQQGEI----PVGAVLVKDSKLIAEGWNQTIQAHDPTAHAEV 66
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
AL +AG T YVTLEPC
Sbjct: 67 VALRKAGIEEENYRLNDLTLYVTLEPCPMC 96
>gi|290508256|ref|ZP_06547627.1| tRNA-specific adenosine deaminase yfhC [Klebsiella sp. 1_1_55]
gi|289777650|gb|EFD85647.1| tRNA-specific adenosine deaminase yfhC [Klebsiella sp. 1_1_55]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 19 DEYWMRHALTLAKRAWEEGEV----PVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMAL 74
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 75 RQGGLVLQNYRLIDATLYVTLEPCVMC 101
>gi|206578910|ref|YP_002237098.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae 342]
gi|206567968|gb|ACI09744.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae 342]
Length = 180
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 19 DEYWMRHALTLAKRAWKEGEV----PVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMAL 74
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 75 RQGGLVLQNYRLIDATLYVTLEPCVMC 101
>gi|323487362|ref|ZP_08092661.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
gi|323399323|gb|EGA91722.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163]
Length = 184
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----H 54
M ++ D ++M AA+R ++ +G + C+IV +G +IGRG H
Sbjct: 28 MKMTD-DEKYMRAAIREAKKAYALGEV----PIGCVIVFEGKIIGRGYNRRIADKNVLSH 82
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+++A + G T Y+TLEPC
Sbjct: 83 AEINAIKKACKKMGDWRLEGCTMYITLEPCPMC 115
>gi|167752821|ref|ZP_02424948.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM
17216]
gi|167659890|gb|EDS04020.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM
17216]
Length = 148
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D +FM AL + + + ++V DG ++GRG T HAE
Sbjct: 1 MEQQQPDEKFMRLALNEAEKALEEQEV--PIGAVVVADGRIVGRGHNLVETLADATAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QAL A G+ T YVT+EPC
Sbjct: 59 MQALTAAASTVGGKYLSECTLYVTVEPCIMC 89
>gi|120554632|ref|YP_958983.1| CMP/dCMP deaminase, zinc-binding [Marinobacter aquaeolei VT8]
gi|120324481|gb|ABM18796.1| tRNA-adenosine deaminase [Marinobacter aquaeolei VT8]
Length = 167
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 1 MPVSS-FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M S D +M+ AL + G V ++V+DG +G G A
Sbjct: 1 MSDSPKNDQYWMARALMLAERAASIGEV----PVGAIVVRDGKELGVGYNAPITGCDPTA 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE++AL +A GAT YVTLEPC+
Sbjct: 57 HAEIRALRDASARVGNYRLTGATLYVTLEPCTMC 90
>gi|307267454|ref|ZP_07548942.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306917535|gb|EFN47821.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 148
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
RFM AA+ ++ +G V +IVKDG +IG+G HAE+ A++E
Sbjct: 4 RFMEAAILEAKKSYQLGEV----PVGAVIVKDGQIIGKGFNQKESSNDATAHAEILAIKE 59
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + YVTLEPC
Sbjct: 60 ACKTLGSWRLDDCSMYVTLEPCPMC 84
>gi|189501687|ref|YP_001957404.1| hypothetical protein Aasi_0231 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497128|gb|ACE05675.1| hypothetical protein Aasi_0231 [Candidatus Amoebophilus asiaticus
5a2]
Length = 155
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D FM AL+ + + P V ++V + +I + HAE+ AL
Sbjct: 13 DDEYFMRIALQEAMKA-YEVNEIP-VGAVVVSNNRIIAKAHNQVEKLKDATAHAEMLALS 70
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 71 SAFSYIGGKYLPDCTLYVTLEPCLMC 96
>gi|303258084|ref|ZP_07344092.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
bacterium 1_1_47]
gi|330998703|ref|ZP_08322432.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Parasutterella excrementihominis YIT 11859]
gi|302859103|gb|EFL82186.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
bacterium 1_1_47]
gi|329576442|gb|EGG57954.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Parasutterella excrementihominis YIT 11859]
Length = 281
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGV------TAYGGCPHA 55
S D FM AL + G V ++V K+G +IGRG G HA
Sbjct: 125 SRDEYFMREALVEAEKAHQAGEV----PVGAVVVDKEGKIIGRGHNLVVAGHDPSG--HA 178
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
E+ AL+ A + + T YVTLEPC
Sbjct: 179 EIIALKNASQNLKNYRLDNCTIYVTLEPCPMCS 211
>gi|134045275|ref|YP_001096761.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Methanococcus maripaludis C5]
gi|132662900|gb|ABO34546.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus maripaludis C5]
Length = 360
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 9/218 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
++ + ++ D + S K + + ++ + D
Sbjct: 138 MIPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLT 197
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDPVLALAFRKK 263
++N + +P+RI++D + K+ L+++ KT + I E ++ + L
Sbjct: 198 VHKINASPKDNPLRIVVDSNLKVPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGI 257
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ DL+K++ + G+ +L+EGG + L++ + +Y + V G
Sbjct: 258 MVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGGA 317
Query: 324 GIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
P+ ++ + + LEY
Sbjct: 318 NSPTYVDGKGFKNVEECTKLELKNYYPLDDGIVLEYRV 355
>gi|210623915|ref|ZP_03294124.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
gi|210153279|gb|EEA84285.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275]
Length = 371
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
S D FM ALR ++ + +IVKDG +IGRG H+E+ A+
Sbjct: 224 SDDEYFMMEALREAKKAYDK--EETPIGAVIVKDGEIIGRGHNLTEHLKDATAHSEILAI 281
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+ A ++ + G YVT+EPC
Sbjct: 282 KNAAKKLKGWRLFGCKMYVTMEPCVMC 308
>gi|270264772|ref|ZP_06193037.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
gi|270041455|gb|EFA14554.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13]
Length = 168
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V L+V D VIG G G HAE+ AL
Sbjct: 6 DEYWMRQALLLAQRAQEEGEV----PVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMAL 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 62 RQGGAVLQNYRLLNATLYVTLEPCVMC 88
>gi|255279741|ref|ZP_05344296.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
14469]
gi|255269514|gb|EET62719.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM
14469]
Length = 166
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
S +FM A+R ++ L + C+IV+DG +I RG HAE+ A
Sbjct: 6 SKIHEKFMREAIRQAKKAYALDEV--PIGCVIVQDGKIIARGYNRRNTDKNTLSHAELIA 63
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+++A + G T Y+TLEPC
Sbjct: 64 IKKAAKKTGDWRLEGCTMYITLEPCQMC 91
>gi|57168828|ref|ZP_00367959.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
gi|305432431|ref|ZP_07401593.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
gi|57019875|gb|EAL56558.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228]
gi|304444470|gb|EFM37121.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20]
Length = 326
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 71/373 (19%), Positives = 135/373 (36%), Gaps = 79/373 (21%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
+M+ AL + + LT NP+V C+I+ K+ ++ GC HAE+ A+ A
Sbjct: 4 FYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIAHAFTNL 63
Query: 68 -------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
+ + A+VTLEPCSH G++PPCA+ E G +++ +
Sbjct: 64 NPEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFI 123
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
V D + ++ +G ++L ++G+ ++ + + EGK L +L Q + L ++++
Sbjct: 124 SVKDENE-IASKGAEFLKKQGVEIEFGVLKDEGKKLLKPFLKWQKGQFKLFKLALSMNGS 182
Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
I +LV G + D + + +
Sbjct: 183 PFGK--------IVSNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARLCKGKAPNLC 234
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
I+ + + S + + + N
Sbjct: 235 ILSHQNLENFDKSIPLFSVPHRQIYTQIPNKAKF-------------------------- 268
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
L+ EGG F + +D ++++S + E + PL NF +
Sbjct: 269 --------LMYEGGENFLKKFKDE--MDMFLIFQSSSLNDEKNVTMPL-------NFKPL 311
Query: 342 RRDYFGSDVCLEY 354
R++ GSD Y
Sbjct: 312 YRNFLGSDTYGIY 324
>gi|188533151|ref|YP_001906948.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
gi|188028193|emb|CAO96051.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99]
Length = 186
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL+ +R G V ++V DG VIG G G HAE+ AL
Sbjct: 26 DEYWMRHALQLARRAWNEGEV----PVGAVLVLDGQVIGEGWNRPIGHHDPTAHAEMMAL 81
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ T YVTLEPC
Sbjct: 82 RQGGKVIENYRLMDTTLYVTLEPCVMC 108
>gi|253702219|ref|YP_003023408.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. M21]
gi|251777069|gb|ACT19650.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M21]
Length = 166
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ D +M A+ +R G + ++VKDG+VI RG HAE
Sbjct: 1 MHKDDHYWMGQAIAQARRAEAIGEV----PIGAVVVKDGVVIARGHNLRESKQDPAAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A + GAT YVTLEPC+
Sbjct: 57 MIAIRKAAKKLASWRLTGATLYVTLEPCTMC 87
>gi|254490420|ref|ZP_05103607.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Methylophaga thiooxidans DMS010]
gi|224464386|gb|EEF80648.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Methylophaga thiooxydans DMS010]
Length = 149
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 DA-RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
D R+M AL ++ G V +IV + +IG G HAE+ A
Sbjct: 3 DEIRWMQRALALAQRAEAEGEV----PVGAVIVLNNEIIGEGWNQPISANDATAHAEIIA 58
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A + GA Y+TLEPC+
Sbjct: 59 LRQACQLMNNYRLPGADMYITLEPCAMC 86
>gi|238784197|ref|ZP_04628210.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
gi|238714906|gb|EEQ06905.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970]
Length = 181
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M AL + G V ++V D VIG G HAE+ AL
Sbjct: 19 DEYWMQRALMLALRAQEEGEV----PVGAVLVLDNQVIGEGWNRSICDSDPTAHAEIMAL 74
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 75 RQGGQVVQNYRLLDATLYVTLEPCVMC 101
>gi|114330609|ref|YP_746831.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91]
gi|114307623|gb|ABI58866.1| tRNA-adenosine deaminase [Nitrosomonas eutropha C91]
Length = 167
Score = 90.4 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
PV + D FM AL +R G + P V ++V++ + G G T HAE+
Sbjct: 9 PVQAEDEYFMRQALDLARVA-GDSGEVP-VGAVVVRNSQIAGYGYNCPVTLMDPTAHAEI 66
Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHY 82
AL +A + T YVTLEPC
Sbjct: 67 MALRDAANKLGNYRLPECTLYVTLEPCVMC 96
>gi|238788214|ref|ZP_04632009.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
33641]
gi|238723801|gb|EEQ15446.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC
33641]
Length = 191
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V D VIG G HAE+ AL
Sbjct: 32 DEYWMQRALALALRAQEEGEV----PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMAL 87
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 88 RQGGRAVQNYRLIDATLYVTLEPCVMC 114
>gi|238753915|ref|ZP_04615275.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
gi|238707903|gb|EEQ00261.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473]
Length = 171
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M D +M AL ++ G V ++V D IG G H
Sbjct: 1 MSTEYNDEYWMRQALELAQRAQEEGEV----PVGAVLVLDNQAIGIGWNRPIVHHDPTAH 56
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ AL + G+ + AT YVTLEPC
Sbjct: 57 AEMMALRQGGQALQNYRLLNATLYVTLEPCVMC 89
>gi|327394833|dbj|BAK12255.1| tRNA-specific adenosine deaminase TadA [Pantoea ananatis AJ13355]
Length = 98
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D +M AL ++ G V ++V+ VIG G G HAE+
Sbjct: 11 EQDEYWMRRALTLAQRAWEQGEV----PVGAVLVQGDRVIGEGWNRPIGQHDPTAHAEIM 66
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL + G+ T YVTLEPC
Sbjct: 67 ALRQGGKVLENYRLLNTTLYVTLEPCIMC 95
>gi|288942407|ref|YP_003444647.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180]
gi|288897779|gb|ADC63615.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum
DSM 180]
Length = 166
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
+ D +M AL +R G V ++V++G ++G G HA
Sbjct: 4 TFADADVHWMRHALELARCAAEEGEV----PVGAVLVREGEILGEGWNRPIIRHDPSAHA 59
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+QAL +AG G+ YVTLEPC
Sbjct: 60 EIQALRDAGRRVGNYRLPGSILYVTLEPCVMC 91
>gi|254673573|emb|CBA09063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha275]
Length = 267
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 11/264 (4%)
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
+ DP+ V+G+GL L GI + + E + + +L+R +R + LK AVS D
Sbjct: 1 MRDPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDG 60
Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
++ S ITG ++ V +LRA+S A+L GIGTVLAD+P L R P RI
Sbjct: 61 KTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPT-LRQPARI 119
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKK 277
+LD +L +S ++ I E ++ L ++ I+ DL
Sbjct: 120 VLDSRLRLPPNSHLVTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHH 179
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GY 333
L+ +L G ++VE G+ + +F+ L D I+LYRS ++G G L E
Sbjct: 180 LMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALS 239
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGK 357
+ V + G D+ +
Sbjct: 240 APPLWTPVSSEILGHDIKTVFRKN 263
>gi|253580414|ref|ZP_04857679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848144|gb|EES76109.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 181
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
RFM A+R ++ + C+IV +G +I RG HAE+ A+ +A
Sbjct: 14 ERFMKEAIRQAKKA--EALEEVPIGCVIVHEGKIIARGYNRRNTDKNTLSHAELNAIRKA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ G T YVTLEPC
Sbjct: 72 SKKLGDWRLEGCTMYVTLEPCQMCS 96
>gi|152971415|ref|YP_001336524.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150956264|gb|ABR78294.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 172
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 11 DEYWMRHALTLAKRAWEEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 66
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 67 RQGGLVLQNYRLIDATLYVTLEPCVMC 93
>gi|317476774|ref|ZP_07936017.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
gi|316906949|gb|EFV28660.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
Length = 187
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
S DAR+M A+ S ++ +IV+DG VI GV HAEV
Sbjct: 31 FSDEDARYMRMAIDLSVENIDNGGG--PFGAVIVRDGEVIATGVNRVVPNNDPTAHAEVN 88
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A ++ G T Y + EPC
Sbjct: 89 AIRNACQKLDTFQLEGCTVYSSCEPCPMC 117
>gi|109899420|ref|YP_662675.1| CMP/dCMP deaminase, zinc-binding [Pseudoalteromonas atlantica
T6c]
gi|109701701|gb|ABG41621.1| tRNA-adenosine deaminase [Pseudoalteromonas atlantica T6c]
Length = 162
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + D +M AL + P V ++VKD ++G G HAE
Sbjct: 1 MSL-EQDQLWMRHALSLASKAA-QAGEIP-VGAVLVKDQKIVGEGWNQSITLNDPSAHAE 57
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ A+ +AG + T YVTLEPC+
Sbjct: 58 MLAIRQAGINVKNYRLIDTTLYVTLEPCTMC 88
>gi|6572110|emb|CAB63093.1| riboflavin-specific deaminase [Bartonella quintana]
Length = 87
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L +L RG+ S+L+EGG F+N+ VD +I + + +++G+ I +P YL +
Sbjct: 1 AILRLLYQRGINSVLLEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ 60
Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
F V FG+D C ++ K LC QEL
Sbjct: 61 -FYEVETRMFGNDRCYKWRRKTLCSQEL 87
>gi|170723352|ref|YP_001751040.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
gi|169761355|gb|ACA74671.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619]
Length = 159
Score = 90.0 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D FM AL + +G V ++V+ G VIG+G HAE+
Sbjct: 9 SRDQEFMRMALDLAAQGAALGEV----PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMV 64
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G+T YVTLEPCS
Sbjct: 65 AIRAAAKSASNYRLPGSTLYVTLEPCSMC 93
>gi|90407089|ref|ZP_01215278.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
gi|90311811|gb|EAS39907.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3]
Length = 182
Score = 90.0 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D ++M AL + +G V ++VKD VI G ++ C HAEV A+
Sbjct: 22 DEKWMQYALLLADKAEALGEV----PVGAVLVKDNEVIAEGWNLSILSHDACAHAEVMAV 77
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
EAG + + T YVTLEPC
Sbjct: 78 REAGHKLQNYRLIDCTLYVTLEPCPMC 104
>gi|291618438|ref|YP_003521180.1| TadA [Pantoea ananatis LMG 20103]
gi|291153468|gb|ADD78052.1| TadA [Pantoea ananatis LMG 20103]
Length = 171
Score = 90.0 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D +M AL ++ G V ++V+ VIG G G HAE+
Sbjct: 11 EQDEYWMRRALTLAQRAWEQGEV----PVGAVLVQGDRVIGEGWNRPIGQHDPTAHAEIM 66
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL + G+ T YVTLEPC
Sbjct: 67 ALRQGGKVLENYRLLNTTLYVTLEPCIMC 95
>gi|138893694|ref|YP_001124147.1| cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
gi|134265207|gb|ABO65402.1| Cytosine deaminase [Geobacillus thermodenitrificans NG80-2]
Length = 161
Score = 90.0 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
+ + D +M A+ ++ G + +IV+DG VI R T HAE
Sbjct: 1 MMNNDEYYMRLAIEEAKKAEQIGEV----PIGAVIVQDGRVIARAHNLRETEQRAIAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ EA + AT YVTLEPC+
Sbjct: 57 ILAIAEACQATGSWRLERATLYVTLEPCAMC 87
>gi|304314445|ref|YP_003849592.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanothermobacter marburgensis str.
Marburg]
gi|302587904|gb|ADL58279.1| predicted 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanothermobacter marburgensis str.
Marburg]
Length = 216
Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 82/216 (37%), Gaps = 5/216 (2%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L A++ D I S + L R ++ + D
Sbjct: 1 MRPYVILNAAMTLDGKIATKTGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
R++ + +P+R+++D + L+ +++ + + + ++ + +
Sbjct: 61 VHRVDAEEGDNPVRVVVDSRARTPLNFRVLNDEAPTVIGVSESAPASRVNELRKRAEVVV 120
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ +L LL L GV L++EGG+ + +S + LVD + + + ++ G +
Sbjct: 121 AGKERVNLCLLLERLHEMGVRRLMLEGGSTLNYSMLTEGLVDEVRVCIAPMIAGGREART 180
Query: 328 PLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358
++ + R G D+ +EY K
Sbjct: 181 LVDGEGIDDMSDAIKLELERFYTLGEDLIVEYTVKR 216
>gi|315499926|ref|YP_004088729.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
excentricus CB 48]
gi|315417938|gb|ADU14578.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis
excentricus CB 48]
Length = 216
Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 5/213 (2%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TLK+A + D I S ITG ++ VH LRA DA+LVGI TVL DDPELT
Sbjct: 4 PFVTLKLATTLDGRIATHTGESRWITGEPARRAVHELRASHDAVLVGIETVLKDDPELTV 63
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNINII 268
RL G + + P R++LD ++ L SK+++TA + P +VT +D +P L +
Sbjct: 64 RLQGYEGYQPARVVLDTRGRIPLHSKLVQTARVIPTYVVTTHDLNPELVSLGVRPLKVAS 123
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
DL L L G+ L VEGG +A +F+ VD + +R+ ++G G
Sbjct: 124 RHQRVDLIAALEALNEAGIDRLFVEGGGQIATAFVKLGAVDRLEWFRAPTILGGDGRAVI 183
Query: 329 ----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ + F V G D+ Y +
Sbjct: 184 GFLDIADINRVIRFTRVGVQAVGDDLWESYELE 216
>gi|315644422|ref|ZP_07897555.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
V453]
gi|315280172|gb|EFU43465.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
V453]
Length = 163
Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+M A+ +R +G + +IV+ +IGRG G HAE+ A+
Sbjct: 16 HEHWMREAIAEARKAEELGEV----PIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAI 71
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA + YVTLEPC
Sbjct: 72 REASQHLGAWRLLDCRLYVTLEPCPMC 98
>gi|288934060|ref|YP_003438119.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
At-22]
gi|288888789|gb|ADC57107.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
At-22]
Length = 169
Score = 89.6 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 8 DEYWMRHALTLAKRAWEEGEV----PVGAVLVYNNQVIGEGWNRPIGRHDPTAHAEIMAL 63
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 64 RQGGLVQQNYRLIDATLYVTLEPCVMC 90
>gi|146308436|ref|YP_001188901.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp]
gi|145576637|gb|ABP86169.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina
ymp]
Length = 158
Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S D FM AL +R G V ++V+DG V+G+G + HAE+
Sbjct: 10 SRDEHFMRLALVQARLGAEQGEV----PVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMV 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G+T YVTLEPCS
Sbjct: 66 AIRAAAQSVQNYRLPGSTLYVTLEPCSMC 94
>gi|225376320|ref|ZP_03753541.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans
DSM 16841]
gi|225211696|gb|EEG94050.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans
DSM 16841]
Length = 166
Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M ++ D ++M AA+R ++ L + C+IV+DG +I RG HAE
Sbjct: 1 MKMT-QDEKYMKAAIREAKKAYAL--DEVPIGCVIVQDGTIIARGYNRRNTEGNTLAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+++A + T YVTLEPC
Sbjct: 58 LTAIKKASKKTGDWRLEDCTMYVTLEPCQMC 88
>gi|296104233|ref|YP_003614379.1| tRNA-specific adenosine deaminase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058692|gb|ADF63430.1| tRNA-specific adenosine deaminase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 168
Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 1 MPVSSF-DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M F +M AL +R G V ++V + VIG G G
Sbjct: 1 MSNPEFSHEYWMRHALTLARRAWDEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTA 56
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
HAE+ AL + G T YVTLEPC
Sbjct: 57 HAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCS 91
>gi|294102217|ref|YP_003554075.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium
colombiense DSM 12261]
gi|293617197|gb|ADE57351.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium
colombiense DSM 12261]
Length = 156
Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY--GGCPHAE 56
M S D FM+ AL +R G VA L+V++ VIG+G + HAE
Sbjct: 1 MIHSDTDIFFMNMALDEARKAAEHGEV----PVAALVVRNNEVIGKGSNSKHLDPTAHAE 56
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
+ A+ EA E RG+T YVTLEPC
Sbjct: 57 IIAIREATERLGTWNLRGSTLYVTLEPCPMC 87
>gi|156932900|ref|YP_001436816.1| hypothetical protein ESA_00702 [Cronobacter sakazakii ATCC BAA-894]
gi|156531154|gb|ABU75980.1| hypothetical protein ESA_00702 [Cronobacter sakazakii ATCC BAA-894]
Length = 213
Score = 89.6 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
+M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 48 HEYWMRHALTLAQRAWDEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 103
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 104 RQGGLVLQNYRLLDTTLYVTLEPCVMC 130
>gi|149375103|ref|ZP_01892875.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
algicola DG893]
gi|149360467|gb|EDM48919.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter
algicola DG893]
Length = 166
Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M + D +MS AL+ + G P V ++V DG IG G A HAE
Sbjct: 1 MTGNEEDEAWMSRALQLAGQA-GAAGEVP-VGAVVVLDGKEIGTGFNAPISGCDPTAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A GAT YVTLEPC+
Sbjct: 59 IRALRDAAARVGNYRLPGATLYVTLEPCTMC 89
>gi|117617810|ref|YP_857319.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559217|gb|ABK36165.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 179
Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D R+M A+ + G+ V ++V G V+G G + C HAEV A+
Sbjct: 14 EQDERWMRHAMALAARAEGIGEI--PVGAVLVLGGEVVGEGWNRSISEHDACAHAEVMAI 71
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
AG + T YVTLEPC
Sbjct: 72 RAAGVRLQNYRLLDTTLYVTLEPCCMC 98
>gi|327393622|dbj|BAK11044.1| diaminohydroxyphosphoribosulpyrimidine deaminase ribD [Pantoea
ananatis AJ13355]
Length = 124
Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 49/94 (52%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89
V C+IV DG V+ +G T G HAE+ A+ + YVTLEPCS GR+P CA
Sbjct: 6 PVGCVIVHDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISECEIYVTLEPCSFQGRTPSCA 65
Query: 90 QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
I E + + + +DDP + G G L + G
Sbjct: 66 LTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAG 99
>gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
++ D I + + ++G S+ +V LR +SDAI+VG TV DDP LT R H
Sbjct: 1 MTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTARHVK--GH 58
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P+RI++ L ++ + ++ L K + ++ D + +
Sbjct: 59 VPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRD 118
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---- 333
+++ RG S+L E G +A S I++ ++ + + + +IG P+P+ E
Sbjct: 119 VMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQM 178
Query: 334 -LEKNFMCVRRDYFGSDVCL 352
+ + V + D+ +
Sbjct: 179 TQAIDLIDVSYEQIDRDMLM 198
>gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans]
gi|133738508|emb|CAL61553.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans]
Length = 170
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D +M AL + +G V ++VKDG VI G G HAE+
Sbjct: 9 TQDEIWMRQALDQAHNAWALGEV----PVGAVVVKDGQVIATGFNQPIGTHDPTAHAEIM 64
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYG 83
AL A G YVTLEPC
Sbjct: 65 ALRAAATILGNYRLPGCELYVTLEPCVMCS 94
>gi|297582358|ref|YP_003698138.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
gi|297140815|gb|ADH97572.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
Length = 174
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 1 MPVSSF--DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG----GC 52
M S D +M AL + G + +IVKD I+I RG
Sbjct: 1 MKTSQQLKDEAYMKEALTEADKAEAIGEV----PIGAVIVKDDIIIARGYNERETKQRAT 56
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+EEA G T YVTLEPC
Sbjct: 57 GHAELVAIEEACRILKTWRLEGCTLYVTLEPCPMC 91
>gi|261403330|ref|YP_003247554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus vulcanius M7]
gi|261370323|gb|ACX73072.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus vulcanius M7]
Length = 219
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 11/216 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ + ++ D + I+ +VH +RA+ D I+VGIGTVL DDP L
Sbjct: 1 MKPYVISNVGITLDGKLATVN-NDSRISCEEDLIRVHKIRAKVDGIMVGIGTVLKDDPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKK 263
T + +P+RI++D ++ L+++++ + + E + L R
Sbjct: 60 TVHKIKS-DRNPVRIVVDSKLRVPLNARVLNSDAKTIIATTEDLDEEKQKKIKILKERGI 118
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+I + + DL+KL+ +L +G+ ++L+EGG + LVD + +Y + + G
Sbjct: 119 DIVMCGEEKVDLRKLMNVLYKKGIKTILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGK 178
Query: 324 GIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
P+ ++ + G + LE+
Sbjct: 179 NAPTYVDGEGFKSEEESVKLELKNFYRLGEGIVLEF 214
>gi|326390318|ref|ZP_08211877.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
JW 200]
gi|325993595|gb|EGD52028.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
JW 200]
Length = 148
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
RFM AA+ ++ +G V +IVKDG +IG+G HAE+ A++E
Sbjct: 4 RFMEAAILEAKKSYQLGEV----PVGAVIVKDGQIIGKGFNQKESSNDATTHAEILAIKE 59
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + YVTLEPC
Sbjct: 60 ACKTLGSWRLDDCSMYVTLEPCPMC 84
>gi|145640612|ref|ZP_01796195.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
gi|145274538|gb|EDK14401.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
22.4-21]
Length = 85
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYL 334
+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+ L +
Sbjct: 1 MRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLAD 60
Query: 335 EKNFMCVRRDYFGSDVCLEYIGK 357
+ + G D+ L Y K
Sbjct: 61 APLWQLNELEQIGDDIKLTYTPK 83
>gi|302672151|ref|YP_003832111.1| CMP/dCMP deaminase zinc-binding domain-containing protein
[Butyrivibrio proteoclasticus B316]
gi|302396624|gb|ADL35529.1| CMP/dCMP deaminase zinc-binding domain-containing protein
[Butyrivibrio proteoclasticus B316]
Length = 190
Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59
D +FM AA+ +R +G + C+IV +G +IGRG HAE+ A
Sbjct: 26 QDIKFMKAAITQARKAYVLGEV----PIGCVIVYEGKIIGRGYNRRNTDKTTLAHAEITA 81
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
++ AG+ G YVTLEPC
Sbjct: 82 IKRAGKVIGDWRLEGCKLYVTLEPCQMC 109
>gi|118580679|ref|YP_901929.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
gi|118503389|gb|ABK99871.1| tRNA-adenosine deaminase [Pelobacter propionicus DSM 2379]
Length = 181
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
++ +M A+ + + + C+IV+D +I RG HAE+
Sbjct: 10 SIARSHEYWMQRAIAEAGKAR--SRDEVPIGCVIVRDNRIIARGHNLRESSQDPSAHAEM 67
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ +A + T YVTLEPC+
Sbjct: 68 IAIRKAARKLSSWRLLDTTLYVTLEPCTMC 97
>gi|157371891|ref|YP_001479880.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
gi|157323655|gb|ABV42752.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568]
Length = 170
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M ALR + G V L+V D VIG G G HAE+ AL
Sbjct: 6 DEYWMRQALRLALRAQEEGEV----PVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMAL 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G AT YVTLEPC
Sbjct: 62 RQGGAVLQNYRLLNATLYVTLEPCVMC 88
>gi|283786173|ref|YP_003366038.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
gi|282949627|emb|CBG89246.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168]
Length = 180
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 21 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 78
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 79 GGLVLQNYRLIDATLYVTLEPCVMC 103
>gi|261886453|ref|ZP_06010492.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 330
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 30/126 (23%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA------ 63
M+ A+ + LT NP+V C+I K+G ++ G PHAE+ A++ A
Sbjct: 1 MNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKNP 60
Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
G+TAYVTLEPCSH GR+PPCA + E G ++V
Sbjct: 61 AFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQV 120
Query: 101 VVCVDD 106
++ D
Sbjct: 121 IIGAID 126
>gi|153853556|ref|ZP_01994936.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
gi|149753711|gb|EDM63642.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814]
Length = 169
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + S D ++M A++ ++ +G + C+IV +IGRG H
Sbjct: 1 MNMQSTDEKYMKEAIKQAKKAYAIGEV----PIGCVIVYQDKIIGRGYNRRTIDNNTLAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
AE+ A+++A + T YVTLEPC
Sbjct: 57 AELIAIKKASKKMNDWRLEDCTMYVTLEPCQMCS 90
>gi|146293740|ref|YP_001184164.1| CMP/dCMP deaminase, zinc-binding [Shewanella putrefaciens CN-32]
gi|145565430|gb|ABP76365.1| tRNA-adenosine deaminase [Shewanella putrefaciens CN-32]
Length = 164
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
D +M A++ + G V ++VKDG I G + HAE+
Sbjct: 1 MDEYWMQVAMQMAEKAEAAGEV----PVGAVLVKDGQQIATGYNLSISQHDPTAHAEILC 56
Query: 60 LEEAGEEARG-----ATAYVTLEPCSHY 82
L AG++ AT Y+TLEPC+
Sbjct: 57 LRSAGKKLENYRLLDATLYITLEPCAMC 84
>gi|260598940|ref|YP_003211511.1| tRNA-specific adenosine deaminase [Cronobacter turicensis z3032]
gi|260218117|emb|CBA32906.1| tRNA-specific adenosine deaminase [Cronobacter turicensis z3032]
Length = 196
Score = 89.2 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
+M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 31 HEYWMRHALTLAQRAWDEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 86
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 87 RQGGLVLQNYRLLDTTLYVTLEPCVMC 113
>gi|167038582|ref|YP_001666160.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167038705|ref|YP_001661690.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514]
gi|256751425|ref|ZP_05492303.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
CCSD1]
gi|300913736|ref|ZP_07131053.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
gi|307723248|ref|YP_003902999.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
X513]
gi|320116977|ref|YP_004187136.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166852945|gb|ABY91354.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514]
gi|166857416|gb|ABY95824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749644|gb|EEU62670.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
CCSD1]
gi|300890421|gb|EFK85566.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
gi|307580309|gb|ADN53708.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
X513]
gi|319930068|gb|ADV80753.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 148
Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
+FM AAL ++ +G V +IVK+G +IGRG HAE+ A++E
Sbjct: 4 KFMEAALLEAKKSYQLGEV----PVGAVIVKEGQIIGRGFNQKESTNDATAHAEIIAIKE 59
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + YVTLEPC
Sbjct: 60 ACKTLGSWRLDDCSMYVTLEPCPMC 84
>gi|254166543|ref|ZP_04873397.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Aciduliprofundum boonei T469]
gi|289596093|ref|YP_003482789.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Aciduliprofundum boonei T469]
gi|197624153|gb|EDY36714.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Aciduliprofundum boonei T469]
gi|289533880|gb|ADD08227.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Aciduliprofundum boonei T469]
Length = 217
Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+
Sbjct: 1 MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60
Query: 207 LT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT +P+R++LD ++ +++++ + + L
Sbjct: 61 LTVKEKYVANAKNPVRVVLDSKLRIPKNARVLNSIAKTIIATTENAKIRELNAEIVICGK 120
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
D DLK LL L RG+ S++VEGG V SF+ LVD + ++ +VIG G
Sbjct: 121 -----DKVDLKCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGG-GA 174
Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKNL 359
PS +E + + GS + L Y ++
Sbjct: 175 PSLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRDE 213
>gi|269965211|ref|ZP_06179345.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
gi|269830197|gb|EEZ84424.1| zinc-binding domain protein [Vibrio alginolyticus 40B]
Length = 169
Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ + G V ++VKDG +I G G HAE+Q L +AG
Sbjct: 1 MRRAMELAEQAEAEGEV----PVGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAG 56
Query: 65 EEARG-----ATAYVTLEPCSHY 82
++ T YVTLEPC
Sbjct: 57 QKLENYRLLDTTLYVTLEPCPMC 79
>gi|255546921|ref|XP_002514518.1| conserved hypothetical protein [Ricinus communis]
gi|223546122|gb|EEF47624.1| conserved hypothetical protein [Ricinus communis]
Length = 1624
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ T P V ++V+ G +I RG HAE+ +
Sbjct: 1098 KIDEMFMREALLEAKKAA-DTWEVP-VGAVLVQHGKIIARGYNLVEELRDSTAHAEMICI 1155
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
EA + R T YVTLEPC G + G ++ D +R+
Sbjct: 1156 REASNQLRSWRLAETTLYVTLEPCPMCAGAILQARIDTVVWGAPNKLLGADGSWIRLFPN 1215
Query: 115 G 115
G
Sbjct: 1216 G 1216
>gi|225569894|ref|ZP_03778919.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
15053]
gi|225161364|gb|EEG73983.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM
15053]
Length = 159
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
++S D +FM A++ + + T + C+IV +G +IGRG HAE
Sbjct: 1 MNSVDEKFMKEAIKQAGKAYALNET----PIGCVIVYEGRIIGRGYNRRNTDKNTLAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A G T YVTLEPC
Sbjct: 57 ITAIRKASRKMGDWRLEGCTLYVTLEPCPMC 87
>gi|307249782|ref|ZP_07531760.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858197|gb|EFM90275.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 196
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAE 56
+S D FM AL + V ++V +G +IG G HAE
Sbjct: 35 TISEQDIHFMQYALELADRA--EVIGEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +AG+ T YVTLEPC+
Sbjct: 93 MLAIRQAGKVQRNYRLLDCTLYVTLEPCTMC 123
>gi|284037689|ref|YP_003387619.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM
74]
gi|283816982|gb|ADB38820.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM
74]
Length = 158
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+++ D F+ A++ +R + T +IV+DG ++G+G HAEV
Sbjct: 1 MTNQDEVFLREAIQLAREGM-TTDQGGPFGSVIVRDGQIVGKGFNMVTSTNDPTAHAEVV 59
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ +A G T Y + EPC
Sbjct: 60 AIRDACRNLGTFQLDGCTLYASCEPCPMC 88
>gi|152981408|ref|YP_001353698.1| hypothetical protein mma_2008 [Janthinobacterium sp. Marseille]
gi|151281485|gb|ABR89895.1| Uncharacterized conserved protein [Janthinobacterium sp.
Marseille]
Length = 159
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
DA FM AL +R +G V ++VKDG VI G G HAE+ A
Sbjct: 2 QDAIFMRQALDQARNAWTLGEV----PVGAVVVKDGEVIATGFNQPIGTHDPTAHAEIMA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG 83
L A G +VTLEPC
Sbjct: 58 LRAAASILGNYRLPGCELFVTLEPCVMCS 86
>gi|238762806|ref|ZP_04623775.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
33638]
gi|238699111|gb|EEP91859.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC
33638]
Length = 194
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL + G V ++V D VIG G G HAE+ AL
Sbjct: 30 DEYWMQRALVLALRAQAEGEV----PVGAILVLDNQVIGEGWNRSIGDNDPTAHAEIMAL 85
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 86 RQGGQAVQNYRLIDATLYVTLEPCVMC 112
>gi|95928326|ref|ZP_01311074.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
684]
gi|95135597|gb|EAT17248.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
684]
Length = 165
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S D +M AL +R +G V ++V +G VI H
Sbjct: 1 MNQS-QDEHYMRRALDLARQAEQLGEV----PVGAVVVLNGKVIAAAGNRRETWQDPTAH 55
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL EA + AT YVTLEPC
Sbjct: 56 AELIALREAAKRIDSWRLEEATLYVTLEPCIMC 88
>gi|330445259|ref|ZP_08308911.1| tRNA-specific adenosine deaminase monomer [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489450|dbj|GAA03408.1| tRNA-specific adenosine deaminase monomer [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 163
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66
M A+ + G V ++V +G VIG G G HAE+ AL +AG+
Sbjct: 1 MRRAMELAAKAEGEGEV--PVGAVVVHNGQVIGEGWNRSIGQHDATAHAEIMALRQAGKV 58
Query: 67 ARG-----ATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 LENYRLLDTTVYVTLEPCPMC 79
>gi|308066929|ref|YP_003868534.1| hypothetical protein PPE_00098 [Paenibacillus polymyxa E681]
gi|305856208|gb|ADM67996.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 163
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
A +M A++ + +G + +IVKD +IGRG T HAE+ A
Sbjct: 2 DHAYWMKEAIQEAYKAEALGEV----PIGAVIVKDNEIIGRGYNLRETDADPTAHAEMVA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A E YVTLEPC
Sbjct: 58 IRQASEHLGAWRLLDCRLYVTLEPCPMC 85
>gi|46143725|ref|ZP_00134574.2| COG0590: Cytosine/adenosine deaminases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208056|ref|YP_001053281.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
L20]
gi|126096848|gb|ABN73676.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 189
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
+S D FM AL + G V ++V +G +IG G H
Sbjct: 28 TISEQDIHFMRYALELADRAEAIGEI----PVGAVLVDQEGNIIGEGWNQVIQLSDPSAH 83
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +AG+ T YVTLEPC+
Sbjct: 84 AEMLAIRQAGKVQRNYRLLDCTLYVTLEPCTMC 116
>gi|310639569|ref|YP_003944327.1| cmp/dcmp deaminase zinc-binding protein [Paenibacillus polymyxa
SC2]
gi|309244519|gb|ADO54086.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus polymyxa
SC2]
Length = 165
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSFDA-RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
++ D +M A++ + +G + +IVKD +IGRG HA
Sbjct: 1 MTIMDHAYWMREAIQEAYKAEALGEV----PIGAVIVKDNEIIGRGYNLRETDTDPTAHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A+ +A E YVTLEPC
Sbjct: 57 EMVAIRQASEHLGAWRLLDCRLYVTLEPCPMC 88
>gi|153948638|ref|YP_001400126.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
31758]
gi|152960133|gb|ABS47594.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
31758]
Length = 200
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 38 DEYWMRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMAL 93
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 94 RQGGQAVQNYRLLDATLYVTLEPCVMC 120
>gi|223983492|ref|ZP_03633678.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
12042]
gi|223964664|gb|EEF68990.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM
12042]
Length = 181
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
S D FM A++ +R + ++V DG ++ RG HAE+ A
Sbjct: 7 SKNDEYFMRQAIKEARKA--EALDEVPIGAVLVHDGKILARGHNLREKKQSSLAHAEIVA 64
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+E+A YVTLEPC
Sbjct: 65 IEKACRKTGSWRLEDCVLYVTLEPCPMC 92
>gi|196251180|ref|ZP_03149855.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
gi|196209306|gb|EDY04090.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16]
Length = 169
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
+ + D +M A+ ++ G + +IV+DG VI R T HAE
Sbjct: 9 MMNNDEYYMRLAIEEAKKAEQIGEV----PIGAVIVQDGRVIARAHNLRETEQRAIAHAE 64
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A++EA + AT YVTLEPC+
Sbjct: 65 ILAIDEACQATGSWRLERATLYVTLEPCAMC 95
>gi|218130011|ref|ZP_03458815.1| hypothetical protein BACEGG_01594 [Bacteroides eggerthii DSM 20697]
gi|217987814|gb|EEC54140.1| hypothetical protein BACEGG_01594 [Bacteroides eggerthii DSM 20697]
Length = 207
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
S DAR+M A+ S ++ +IV+DG VI GV HAEV
Sbjct: 51 FSDEDARYMRMAIDLSVENIDNGGG--PFGAVIVRDGEVIATGVNRVVPNNDPTAHAEVN 108
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A ++ G T Y + EPC
Sbjct: 109 AIRNACQKLDTFQLEGCTVYSSCEPCPMC 137
>gi|242240191|ref|YP_002988372.1| CMP/dCMP deaminase zinc-binding [Dickeya dadantii Ech703]
gi|242132248|gb|ACS86550.1| CMP/dCMP deaminase zinc-binding [Dickeya dadantii Ech703]
Length = 164
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M + D +M AL ++ G V ++V+ G VIG G G H
Sbjct: 1 MDTLADDEYWMRHALILAQRAWDEGEV----PVGAVLVQGGKVIGEGWNRPIGQHDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL + G T Y+TLEPC
Sbjct: 57 AEMMALRQGGRVLQNYRLLDTTLYITLEPCIMC 89
>gi|332305596|ref|YP_004433447.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172925|gb|AEE22179.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 162
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + D +M AL + P V ++VKD VIG G HAE
Sbjct: 1 MTL-EQDQLWMRHALALATKAA-DAGEIP-VGAVLVKDQQVIGEGWNQSIMLNDPSAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+QA+ +AGE G T YVTLEPC+
Sbjct: 58 MQAIRQAGEFIQNYRLIGTTLYVTLEPCTMC 88
>gi|213615891|ref|ZP_03371717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 198
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 6/160 (3%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
D P+RI++D +++ +I++ I +D
Sbjct: 39 WAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGE--TWIARTQEDSHAWPD 96
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+ + DL L+ L + + S+ VE G +A + + + LVD +I+Y + +
Sbjct: 97 SVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKL 156
Query: 320 IGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+G LE+ F + G DVCL +
Sbjct: 157 LGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDVCLHMV 196
>gi|170023497|ref|YP_001720002.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
YPIII]
gi|169750031|gb|ACA67549.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis YPIII]
Length = 187
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 25 DEYWMRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMAL 80
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 81 RQGGQAVQNYRLLDATLYVTLEPCVMC 107
>gi|146312685|ref|YP_001177759.1| tRNA-specific adenosine deaminase [Enterobacter sp. 638]
gi|145319561|gb|ABP61708.1| tRNA-adenosine deaminase [Enterobacter sp. 638]
Length = 169
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
+M AL ++ G V ++V + VIG G G HAE+ AL
Sbjct: 8 HEYWMRHALLLAKRAWDEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMAL 63
Query: 61 EEAG-----EEARGATAYVTLEPCSHYG 83
+ G T YVTLEPC
Sbjct: 64 RQGGLVLQNYRLLDTTLYVTLEPCVMCS 91
>gi|212710654|ref|ZP_03318782.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens
DSM 30120]
gi|212686735|gb|EEB46263.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens
DSM 30120]
Length = 170
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M S D +M AL ++ P V L+VKD ++ G + HAE
Sbjct: 1 MTQSEIDEYWMLQALELAKKAQ-NAGEIP-VGALLVKDNQLVATGWNHSIENHDPTAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ L++AG + T YVTLEPC
Sbjct: 59 IVTLKQAGTALQNYRLLDTTLYVTLEPCIMC 89
>gi|237732543|ref|ZP_04563024.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
gi|226908082|gb|EEH94000.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2]
Length = 182
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 25 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQ 82
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 83 GGLVLQNYRLLDATLYVTLEPCVMC 107
>gi|51597197|ref|YP_071388.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP
32953]
gi|186896294|ref|YP_001873406.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis
PB1/+]
gi|51590479|emb|CAH22119.1| putative zinc-binding protein [Yersinia pseudotuberculosis IP
32953]
gi|186699320|gb|ACC89949.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis PB1/+]
Length = 187
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 25 DEYWMRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMAL 80
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 81 RQGGQAVQNYRLLDATLYVTLEPCVMC 107
>gi|22125207|ref|NP_668630.1| tRNA-specific adenosine deaminase [Yersinia pestis KIM 10]
gi|162421541|ref|YP_001607945.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
gi|165928230|ref|ZP_02224062.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939213|ref|ZP_02227763.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008235|ref|ZP_02229133.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212350|ref|ZP_02238385.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399598|ref|ZP_02305122.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421139|ref|ZP_02312892.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423684|ref|ZP_02315437.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467717|ref|ZP_02332421.1| tRNA-specific adenosine deaminase [Yersinia pestis FV-1]
gi|270489818|ref|ZP_06206892.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Yersinia pestis KIM D27]
gi|294504520|ref|YP_003568582.1| deaminase [Yersinia pestis Z176003]
gi|21958073|gb|AAM84881.1|AE013733_2 putative deaminase [Yersinia pestis KIM 10]
gi|162354356|gb|ABX88304.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola]
gi|165912813|gb|EDR31440.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919737|gb|EDR37070.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992617|gb|EDR44918.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206281|gb|EDR50761.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960628|gb|EDR56649.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052102|gb|EDR63510.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057854|gb|EDR67600.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|262362488|gb|ACY59209.1| deaminase [Yersinia pestis D106004]
gi|262366507|gb|ACY63064.1| deaminase [Yersinia pestis D182038]
gi|270338322|gb|EFA49099.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Yersinia pestis KIM D27]
gi|294354979|gb|ADE65320.1| deaminase [Yersinia pestis Z176003]
Length = 200
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 38 DEYWMRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMAL 93
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 94 RQGGQAVQNYRLLDATLYVTLEPCVMC 120
>gi|220932912|ref|YP_002509820.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
gi|219994222|gb|ACL70825.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168]
Length = 159
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM AL +R + L + ++V +G ++G G T HAE+ A+
Sbjct: 2 KTDEDFMELALEEARKALAL--EEVPIGAVVVCNGEIVGSGHNLKETENDPTAHAEIVAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A YVT+EPC
Sbjct: 60 RDAARKLSSWRLNECQLYVTIEPCPMC 86
>gi|126175184|ref|YP_001051333.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS155]
gi|125998389|gb|ABN62464.1| tRNA-adenosine deaminase [Shewanella baltica OS155]
Length = 175
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
S D ++M A+ + G V ++VKDG I G + HAE+
Sbjct: 10 SEQDEQWMQVAMLMAEKAEAEGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAHAEI 65
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
L EAG AT YVTLEPC+
Sbjct: 66 LCLREAGRLVENYRLLDATLYVTLEPCAMC 95
>gi|254786582|ref|YP_003074011.1| cytidine and deoxycytidylate deaminase family protein
[Teredinibacter turnerae T7901]
gi|237687430|gb|ACR14694.1| cytidine and deoxycytidylate deaminase family protein
[Teredinibacter turnerae T7901]
Length = 164
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
+S D +M+ AL +R G V ++V+DG +IGRG G HAE
Sbjct: 1 MSLNDEHWMTEALVLAREAAAQGEV----PVGAVLVQDGAIIGRGSNNPIGSCDASGHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL +AG+ AT YVT+EPC+
Sbjct: 57 ICALRDAGQRQKNYRLPNATLYVTIEPCTMC 87
>gi|320176139|gb|EFW51206.1| tRNA-specific adenosine-34 deaminase [Shigella dysenteriae CDC
74-1112]
Length = 178
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|303244611|ref|ZP_07330944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanothermococcus okinawensis IH1]
gi|302485037|gb|EFL47968.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanothermococcus okinawensis IH1]
Length = 225
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 81/219 (36%), Gaps = 10/219 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ + +S D + S K ++ + ++ + D
Sbjct: 7 PYVISNVGMSLDGKLATIDNDSRISGEEDLKRVHNIRKNVDGIMVGIGTILKDDPRLTVH 66
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-----TENDDPVLALAFRKKN 264
+++ +P+RI++D + ++ L+++++ + + +
Sbjct: 67 KIDAKIGDNPIRIVIDSNLRIPLNARVLNKDAKTIIATTLKDTPNKIEKINKLKDMENVE 126
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
I + +LKKL+ IL +G+ +L+EGG + LVD + +Y + + G G
Sbjct: 127 IIRTGIEKVNLKKLMEILYKKGIKKILLEGGGTLNWGMFKENLVDEVSVYVAPKIFGGVG 186
Query: 325 IPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
P+ ++ + + F + LE+ K
Sbjct: 187 APTYVDGEGFKTVDECVKLKLEKYYPFDEGIVLEFKVKK 225
>gi|238793763|ref|ZP_04637384.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
gi|238726827|gb|EEQ18360.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909]
Length = 181
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 19 DEYWMQRALTLALRAQNEGEV----PVGAVLVLGNQVIGEGWNKSIRDNDPTAHAEIMAL 74
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 75 RQGGQVVQNYRLLEATLYVTLEPCVMC 101
>gi|165975988|ref|YP_001651581.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190149887|ref|YP_001968412.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307247548|ref|ZP_07529592.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307252128|ref|ZP_07534027.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307256596|ref|ZP_07538377.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307261030|ref|ZP_07542712.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263211|ref|ZP_07544831.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876089|gb|ABY69137.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189915018|gb|ACE61270.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306855913|gb|EFM88072.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860428|gb|EFM92442.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306865006|gb|EFM96908.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306869332|gb|EFN01127.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871428|gb|EFN03152.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 196
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
+S D FM AL + G V ++V +G +IG G H
Sbjct: 35 TISEQDIHFMRYALELADRAEAIGEI----PVGAVLVDQEGNIIGEGWNQVIQLSDPSAH 90
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +AG+ T YVTLEPC+
Sbjct: 91 AEMLAIRQAGKVQRNYRLLDCTLYVTLEPCTMC 123
>gi|303251559|ref|ZP_07337733.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303252205|ref|ZP_07338373.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302648988|gb|EFL79176.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649557|gb|EFL79739.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 174
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
+S D FM AL + G V ++V +G +IG G H
Sbjct: 13 TISEQDIHFMRYALELADRAEAIGEI----PVGAVLVDQEGNIIGEGWNQVIQLSDPSAH 68
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +AG+ T YVTLEPC+
Sbjct: 69 AEMLAIRQAGKVQRNYRLLDCTLYVTLEPCTMC 101
>gi|45442315|ref|NP_993854.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Microtus
str. 91001]
gi|108808356|ref|YP_652272.1| tRNA-specific adenosine deaminase [Yersinia pestis Antiqua]
gi|108811379|ref|YP_647146.1| tRNA-specific adenosine deaminase [Yersinia pestis Nepal516]
gi|145599538|ref|YP_001163614.1| tRNA-specific adenosine deaminase [Yersinia pestis Pestoides F]
gi|149365378|ref|ZP_01887413.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
gi|229838506|ref|ZP_04458665.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895510|ref|ZP_04510681.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
gi|229899076|ref|ZP_04514220.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901629|ref|ZP_04516751.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
gi|45437179|gb|AAS62731.1| putative zinc-binding protein [Yersinia pestis biovar Microtus str.
91001]
gi|108775027|gb|ABG17546.1| tRNA-adenosine deaminase [Yersinia pestis Nepal516]
gi|108780269|gb|ABG14327.1| tRNA-adenosine deaminase [Yersinia pestis Antiqua]
gi|145211234|gb|ABP40641.1| tRNA-adenosine deaminase [Yersinia pestis Pestoides F]
gi|149291791|gb|EDM41865.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125]
gi|229681558|gb|EEO77652.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516]
gi|229688021|gb|EEO80093.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694872|gb|EEO84919.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701316|gb|EEO89344.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A]
gi|320016065|gb|ADV99636.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 187
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V VIG G HAE+ AL
Sbjct: 25 DEYWMRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMAL 80
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ AT YVTLEPC
Sbjct: 81 RQGGQAVQNYRLLDATLYVTLEPCVMC 107
>gi|325959850|ref|YP_004291316.1| Riboflavin-specific deaminase domain-containing protein
[Methanobacterium sp. AL-21]
gi|325331282|gb|ADZ10344.1| Riboflavin-specific deaminase domain protein [Methanobacterium sp.
AL-21]
Length = 226
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 85/218 (38%), Gaps = 5/218 (2%)
Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
++ + ++ + L A++ D I S L ++ +
Sbjct: 1 MSPKNYEKPYTILNSAMTLDGKIATKTGSSEISGQEDLVRVHELRMEVDAIMVGINTVLA 60
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
D ++ + +P+RI++D + L+ +I+ + + + D + +
Sbjct: 61 DDPRLTVHKIPSSKSDNPLRIVVDSRARTPLNFRILNSDAKTLLAVTQAADPVKVNKLKQ 120
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
++ + DLK L+ L G+ +L++EGG+ + +S ++ LVD + + + +V G
Sbjct: 121 LVDVVVCGEKHVDLKNLMKHLYELGIKTLMLEGGSTLNYSMLSEGLVDEVRVCIAPMVAG 180
Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ + ++ + G D+ +EY
Sbjct: 181 GKYAKTLADGDGFDEMKDSVKLEFKKSYTLGDDLIVEY 218
>gi|224101625|ref|XP_002312358.1| predicted protein [Populus trichocarpa]
gi|222852178|gb|EEE89725.1| predicted protein [Populus trichocarpa]
Length = 1364
Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 17/172 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ + P V ++V G +I RG HAE+ +
Sbjct: 1161 KTDEMFMREALLEAKKAA-DSWEVP-VGAVLVHHGRIIARGHNLVEELRDSTAHAEMICI 1218
Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
EA + R T Y+TLEPC P CA I++ I+ +V + + G
Sbjct: 1219 REASNKLRTWRLSETTLYITLEPC------PMCAGAILQARIKTLVWGAPNKLLGADGSW 1272
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
++ G + ++ +H + + +R + + A +
Sbjct: 1273 IRLFPDAGEENGSELSNKPAAPVHPFHRKMTIRRGILESECADVMQQFFQLR 1324
>gi|332754092|gb|EGJ84463.1| tRNA-specific adenosine deaminase [Shigella flexneri 4343-70]
Length = 178
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|15221490|ref|NP_177039.1| TADA (TRNA ARGININE ADENOSINE DEAMINASE); catalytic/ hydrolase/ zinc
ion binding [Arabidopsis thaliana]
gi|75336834|sp|Q9S7I0|TADA_ARATH RecName: Full=tRNA-specific adenosine deaminase, chloroplastic;
Short=TADA; Flags: Precursor
gi|5734706|gb|AAD49971.1|AC008075_4 Contains similarity to gi|3329316 cytosine deaminase from Chlamydia
trachomatis genome gb|AE001357 and contains a PF|00383
cytidine deaminase zinc-binding region. EST gb|W43306
comes from this gene [Arabidopsis thaliana]
gi|12324145|gb|AAG52046.1|AC011914_16 unknown protein; 92941-88668 [Arabidopsis thaliana]
gi|332196710|gb|AEE34831.1| tRNA-specific adenosine deaminase [Arabidopsis thaliana]
Length = 1307
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ D FM AL ++ T P V ++V DG +I RG HAE+ +
Sbjct: 1108 TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 1165
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
E + R T YVTLEPC G + G ++ D +R+
Sbjct: 1166 REGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLFPG 1225
Query: 115 G 115
G
Sbjct: 1226 G 1226
>gi|26450841|dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana]
gi|38564244|gb|AAR23701.1| At1g68720 [Arabidopsis thaliana]
Length = 1307
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ D FM AL ++ T P V ++V DG +I RG HAE+ +
Sbjct: 1108 TVDEIFMREALVEAKKAA-DTWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICI 1165
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
E + R T YVTLEPC G + G ++ D +R+
Sbjct: 1166 REGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLFPG 1225
Query: 115 G 115
G
Sbjct: 1226 G 1226
>gi|295694717|ref|YP_003587955.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM
2912]
gi|295410319|gb|ADG04811.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM
2912]
Length = 174
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
MP + D ++M AL+ + + +G + ++V G ++G G H
Sbjct: 1 MPDAPRDLQYMERALQLAAYAGEMGEV----PIGAVVVAGGKILGEGCNLREMWNDPTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ AL +A G G T YVTLEPC+
Sbjct: 57 AEMVALRQAAQAVGGWRLSGTTLYVTLEPCAMC 89
>gi|329298459|ref|ZP_08255795.1| CMP/dCMP deaminase zinc-binding protein [Plautia stali symbiont]
Length = 164
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL +R G V ++V+ VIG G HAE+ AL
Sbjct: 6 DEYWMRHALELARRAWEQGEV----PVGAVLVQGDRVIGEGWNRPISQCDPTAHAEIMAL 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ T YVTLEPC
Sbjct: 62 RQGGKVIDNYRLLDTTLYVTLEPCVMC 88
>gi|24113886|ref|NP_708396.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301]
gi|30063946|ref|NP_838117.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T]
gi|82545011|ref|YP_408958.1| tRNA-specific adenosine deaminase [Shigella boydii Sb227]
gi|89109365|ref|AP_003145.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
substr. W3110]
gi|157162036|ref|YP_001459354.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
gi|187730453|ref|YP_001881338.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
gi|188496019|ref|ZP_03003289.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
gi|209920038|ref|YP_002294122.1| tRNA-specific adenosine deaminase [Escherichia coli SE11]
gi|218547914|ref|YP_002381705.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
35469]
gi|218555084|ref|YP_002387997.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
gi|218696186|ref|YP_002403853.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
gi|254162534|ref|YP_003045642.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
gi|256017292|ref|ZP_05431157.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
gi|293410974|ref|ZP_06654550.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
gi|300817664|ref|ZP_07097879.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 107-1]
gi|300820763|ref|ZP_07100913.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 119-7]
gi|300904258|ref|ZP_07122117.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 84-1]
gi|300920727|ref|ZP_07137133.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 115-1]
gi|300927064|ref|ZP_07142816.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 182-1]
gi|300927685|ref|ZP_07143253.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 187-1]
gi|300951723|ref|ZP_07165542.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 116-1]
gi|300958800|ref|ZP_07170912.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 175-1]
gi|301022068|ref|ZP_07185995.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 196-1]
gi|301024846|ref|ZP_07188483.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 69-1]
gi|301302925|ref|ZP_07209053.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 124-1]
gi|301330339|ref|ZP_07222986.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 78-1]
gi|301648323|ref|ZP_07248063.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 146-1]
gi|312973195|ref|ZP_07787367.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
gi|331643182|ref|ZP_08344317.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
gi|331664126|ref|ZP_08365036.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
gi|331669308|ref|ZP_08370156.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
gi|331678554|ref|ZP_08379229.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
gi|331684208|ref|ZP_08384804.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
gi|332278286|ref|ZP_08390699.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
gi|296183|emb|CAA51064.1| unnamed protein product [Escherichia coli]
gi|987637|dbj|BAA10909.1| YFHC-ECOLI protein [Escherichia coli K-12]
gi|1033148|gb|AAA79821.1| alternate name yfhC; orf178 of GenBank Accession Number X72336
[Escherichia coli str. K-12 substr. MG1655]
gi|24052985|gb|AAN44103.1| putative deaminase [Shigella flexneri 2a str. 301]
gi|30042202|gb|AAP17927.1| putative deaminase [Shigella flexneri 2a str. 2457T]
gi|81246422|gb|ABB67130.1| putative deaminase [Shigella boydii Sb227]
gi|85675450|dbj|BAE76735.1| tRNA-specific adenosine deaminase [Escherichia coli str. K12
substr. W3110]
gi|157067716|gb|ABV06971.1| tRNA-specific adenosine deaminase [Escherichia coli HS]
gi|187427445|gb|ACD06719.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94]
gi|188491218|gb|EDU66321.1| tRNA-specific adenosine deaminase [Escherichia coli 53638]
gi|209913297|dbj|BAG78371.1| putative deaminase [Escherichia coli SE11]
gi|218352918|emb|CAU98717.1| tRNA-specific adenosine deaminase [Escherichia coli 55989]
gi|218355455|emb|CAQ88064.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC
35469]
gi|218361852|emb|CAQ99452.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1]
gi|253974435|gb|ACT40106.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606]
gi|253978602|gb|ACT44272.1| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)]
gi|281601959|gb|ADA74943.1| tRNA-specific adenosine deaminase [Shigella flexneri 2002017]
gi|291471442|gb|EFF13926.1| tRNA-specific adenosine deaminase [Escherichia coli B354]
gi|299881373|gb|EFI89584.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 196-1]
gi|300314548|gb|EFJ64332.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 175-1]
gi|300396377|gb|EFJ79915.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 69-1]
gi|300403791|gb|EFJ87329.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 84-1]
gi|300412298|gb|EFJ95608.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 115-1]
gi|300416948|gb|EFK00259.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 182-1]
gi|300449007|gb|EFK12627.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 116-1]
gi|300464238|gb|EFK27731.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 187-1]
gi|300526516|gb|EFK47585.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 119-7]
gi|300529652|gb|EFK50714.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 107-1]
gi|300841860|gb|EFK69620.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 124-1]
gi|300843673|gb|EFK71433.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 78-1]
gi|301073599|gb|EFK88405.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 146-1]
gi|309702891|emb|CBJ02222.1| tRNA-specific adenosine deaminase [Escherichia coli ETEC H10407]
gi|310331790|gb|EFP99025.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70]
gi|315137183|dbj|BAJ44342.1| tRNA-specific adenosine deaminase [Escherichia coli DH1]
gi|315256586|gb|EFU36554.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 85-1]
gi|315615821|gb|EFU96453.1| tRNA-specific adenosine deaminase [Escherichia coli 3431]
gi|320196395|gb|EFW71019.1| tRNA-specific adenosine-34 deaminase [Escherichia coli WV_060327]
gi|323156217|gb|EFZ42376.1| tRNA-specific adenosine deaminase [Escherichia coli EPECa14]
gi|323170158|gb|EFZ55811.1| tRNA-specific adenosine deaminase [Escherichia coli LT-68]
gi|323177311|gb|EFZ62899.1| tRNA-specific adenosine deaminase [Escherichia coli 1180]
gi|323184561|gb|EFZ69935.1| tRNA-specific adenosine deaminase [Escherichia coli 1357]
gi|324020017|gb|EGB89236.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 117-3]
gi|325496361|gb|EGC94220.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ECD227]
gi|331039980|gb|EGI12200.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
gi|331059925|gb|EGI31902.1| tRNA-specific adenosine deaminase [Escherichia coli TA143]
gi|331064502|gb|EGI36413.1| tRNA-specific adenosine deaminase [Escherichia coli TA271]
gi|331075014|gb|EGI46334.1| tRNA-specific adenosine deaminase [Escherichia coli H591]
gi|331079160|gb|EGI50362.1| tRNA-specific adenosine deaminase [Escherichia coli H299]
gi|332100638|gb|EGJ03984.1| tRNA-specific adenosine deaminase [Shigella sp. D9]
gi|333000545|gb|EGK20124.1| tRNA-specific adenosine deaminase [Shigella flexneri VA-6]
Length = 178
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|226946009|ref|YP_002801082.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
vinelandii DJ]
gi|226720936|gb|ACO80107.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter
vinelandii DJ]
Length = 158
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
S D FM AL + GL V ++V+ G ++GRG HAE+ A+
Sbjct: 10 SQDEHFMREALVLAAEGAGLGEV--PVGAVLVRGGEIVGRGFNCPISRRDPSAHAEMVAI 67
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+T YVTLEPCS
Sbjct: 68 RAAAAALDNYRLPGSTLYVTLEPCSMC 94
>gi|70727433|ref|YP_254349.1| hypothetical protein SH2434 [Staphylococcus haemolyticus
JCSC1435]
gi|68448159|dbj|BAE05743.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 157
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A+ ++ +G + +IVK+ VI TA HAE
Sbjct: 2 ANDEYYMKLAIEEAKKAQKLGEV----PIGAIIVKNNEVIASAHNLRETAQLPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERASKVLGSWRLEGCTLYVTLEPCVMCAGAIVMSR 94
>gi|120598186|ref|YP_962760.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1]
gi|120558279|gb|ABM24206.1| tRNA-adenosine deaminase [Shewanella sp. W3-18-1]
Length = 164
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
D +M A++ + G V ++VKDG I G + HAE+
Sbjct: 1 MDEYWMQVAMQMAEKAEAAGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAHAEILC 56
Query: 60 LEEAGEEARG-----ATAYVTLEPCSHY 82
L AG++ AT Y+TLEPC+
Sbjct: 57 LRSAGKKLENYRLLDATLYITLEPCAMC 84
>gi|74313082|ref|YP_311501.1| tRNA-specific adenosine deaminase [Shigella sonnei Ss046]
gi|73856559|gb|AAZ89266.1| putative deaminase [Shigella sonnei Ss046]
gi|323169455|gb|EFZ55128.1| tRNA-specific adenosine deaminase [Shigella sonnei 53G]
Length = 178
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|296109936|ref|YP_003616885.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus infernus ME]
gi|295434750|gb|ADG13921.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanocaldococcus infernus ME]
Length = 214
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 7/212 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ + +S D + G I+ +VH LRA+ DAI+VGIGTVL DDP L
Sbjct: 1 MKPYVISNVGMSLDGKLVT-VGGDSRISCEEDLIRVHKLRAKVDAIMVGIGTVLKDDPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNIN 266
T E +P+RI++D ++ L+++++ + + N + + AL +
Sbjct: 60 TVHKIKS-EKNPIRIVVDSSLRIPLNARVLNKEAKTIIATTEKANKEKIKALENLGVEVI 118
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ + DLKKL+ IL +G+ S+L+EGG + S LVD + +Y + ++ G +
Sbjct: 119 VCGKERVDLKKLMEILYEKGIRSILLEGGGTLNWSMFKEGLVDEVSVYIAPMIFGGKSVS 178
Query: 327 SPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
EG+ G + LE+
Sbjct: 179 YVDGEGFKSVDEAVKLKLKNFYKLGEGIVLEF 210
>gi|229588606|ref|YP_002870725.1| putative deaminase [Pseudomonas fluorescens SBW25]
gi|229360472|emb|CAY47329.1| putative deaminase [Pseudomonas fluorescens SBW25]
Length = 166
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S D FM AL + +G V ++V+DG +IGRG HAE+
Sbjct: 14 SRDQDFMREALVLAAQGAALGEV----PVGAVLVQDGEIIGRGFNCPISGNDPSAHAEMV 69
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G+T YVTLEPCS
Sbjct: 70 AIRAAAQAISNYRLVGSTLYVTLEPCSMC 98
>gi|170767485|ref|ZP_02901938.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
gi|170123819|gb|EDS92750.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627]
Length = 178
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|326798488|ref|YP_004316307.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
gi|326549252|gb|ADZ77637.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
Length = 156
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
S D FM ALR ++ + + +IV DG +I RG T HAE+QA
Sbjct: 12 SVSDEFFMKEALREAQKAFD--ADEVPIGAVIVHDGKIIARGHNLTETLNDVTAHAEMQA 69
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
A G+ + T YVT+EPC CA I+R+V D +
Sbjct: 70 FTAAANYIGGKYLKDCTLYVTIEPCV------MCAGASYWSQIKRIVFGARDEKRGYATI 123
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ K +V +ME + + +
Sbjct: 124 SKDIVHPKTTVVSGIMEETCRELMQRFFQ 152
>gi|325921804|ref|ZP_08183621.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
gi|325547681|gb|EGD18718.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865]
Length = 165
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 1 MPV----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGG 51
MP+ S D ++M AL+ + P V L+V DG V+G G ++
Sbjct: 1 MPLDAAQSPIDQQWMQRALQLAERAERDYDEIP-VGALLVDADGNVLGEGWNFNIASHDP 59
Query: 52 CPHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAE+ A+ EAG G T YVTLEPC+
Sbjct: 60 TAHAEIMAMREAGRRLANHRLIGCTLYVTLEPCAMC 95
>gi|238796745|ref|ZP_04640251.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
gi|238719476|gb|EEQ11286.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969]
Length = 181
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M A+ + G V ++V D VIG G HAE+ AL
Sbjct: 19 DEYWMQRAMTLALRAQEEGEV----PVGAVLVLDNQVIGEGWNRSIRDNDPTAHAEIMAL 74
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ G+ + AT YVTLEPC
Sbjct: 75 RQGGQAVQNYRLLEATLYVTLEPCVMC 101
>gi|293394841|ref|ZP_06639131.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
gi|291422592|gb|EFE95831.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582]
Length = 179
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M + D +M AL + G V L+V D VIG G G H
Sbjct: 11 MMIEYNDDYWMRQALTLALRAQEEGEV----PVGALLVLDNQVIGEGWNRPIGRHDPTAH 66
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL + G AT YVTLEPC
Sbjct: 67 AEIMALRQGGAVLQNYRLLNATLYVTLEPCVMC 99
>gi|302384616|ref|YP_003820438.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
saccharolyticum WM1]
gi|302195244|gb|ADL02815.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
saccharolyticum WM1]
Length = 164
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D ++M AA+R + +G + C+IV + +I RG HAE+
Sbjct: 2 TIDEKYMRAAIRQAEKAGAMGEV----PIGCVIVYEDKIIARGYNRRTIDKNVLSHAEIN 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A G T YVTLEPC
Sbjct: 58 AIRKACRKVGDWRLEGCTMYVTLEPCPMC 86
>gi|50085441|ref|YP_046951.1| putative deaminase [Acinetobacter sp. ADP1]
gi|49531417|emb|CAG69129.1| putative deaminase [Acinetobacter sp. ADP1]
Length = 174
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M +S D +M A + V +IV VIG G A H
Sbjct: 1 MSLSDTFNDEYWMQLAYEQAVRAAEHNEV--PVGAVIVSQNKVIGSGYNAPITLNDPTAH 58
Query: 55 AEVQALEEAGEEARG------ATAYVTLEPCSHY 82
AE++A+ A E + AT YVTLEPC+
Sbjct: 59 AEIRAIRMACESVKNYRLPEDATLYVTLEPCTMC 92
>gi|260589044|ref|ZP_05854957.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
gi|331083249|ref|ZP_08332362.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540823|gb|EEX21392.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583]
gi|330404330|gb|EGG83875.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 164
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
D RFM A + + L + C+IV +G +I RG HAE+ A+ +
Sbjct: 4 DERFMREAKKQAMKAYALREV--PIGCVIVYEGKIIARGYNRRNTDKNTVSHAEINAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G T YVTLEPC
Sbjct: 62 ASKKLGDWRLEGCTLYVTLEPCQMC 86
>gi|206889673|ref|YP_002249189.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741611|gb|ACI20668.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 154
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M ++D FM AL+ + P V LIV +G +I + T + HAE
Sbjct: 1 MDQLAYDEYFMKEALKEAEKA-YEKGEIP-VGALIVVNGEIISKAHNIKETTFDPTAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ A+ EA AT YVT EPC
Sbjct: 59 ILAIREAARILGAWRLTDATLYVTKEPCIMCS 90
>gi|319775162|ref|YP_004137650.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
gi|329122920|ref|ZP_08251491.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
11116]
gi|317449753|emb|CBY85960.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047]
gi|327471851|gb|EGF17291.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC
11116]
Length = 173
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D G +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|301169624|emb|CBW29225.1| tRNA-specific adenosine deaminase [Haemophilus influenzae 10810]
Length = 173
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D G +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|288549944|ref|ZP_05968716.2| tRNA-specific adenosine deaminase [Enterobacter cancerogenus ATCC
35316]
gi|288317287|gb|EFC56225.1| tRNA-specific adenosine deaminase [Enterobacter cancerogenus ATCC
35316]
Length = 168
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M D +M AL ++ G V ++V + VIG G G
Sbjct: 1 MSNPERDHEYWMRHALTLAQRAWEEGEV----PVGAVLVHNNQVIGEGWNRPIGRHDPTA 56
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
HAE+ AL + G T YVTLEPC
Sbjct: 57 HAEIMALRQGGLVMQNYRLLDTTLYVTLEPCVMCS 91
>gi|237653174|ref|YP_002889488.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
gi|237624421|gb|ACR01111.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T]
Length = 154
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
D +M AAL + G P V ++V G ++GRG G HAE+ AL +
Sbjct: 3 DEDYMRAALEQA-RAAGAADEVP-VGAVVVCGGEIVGRGFNQPIGRHDPTAHAEIMALRD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC+ +
Sbjct: 61 AAAHLGNYRLPGCELYVTLEPCAMCSGAIM 90
>gi|56478507|ref|YP_160096.1| cytosine/adenosine deaminase [Aromatoleum aromaticum EbN1]
gi|56314550|emb|CAI09195.1| probable cytosine/adenosine deaminases [Aromatoleum aromaticum
EbN1]
Length = 154
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D FM AAL +R G P V ++V DG ++GRG HAEV AL +
Sbjct: 3 DEDFMRAALEQARMA-GACDEVP-VGAVVVLDGEIVGRGFNQPIRRHDPSAHAEVMALRD 60
Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPP 87
AGE G +VTLEPC+ +
Sbjct: 61 AGERLGNYRFPGCELFVTLEPCAMCSGAIM 90
>gi|121998459|ref|YP_001003246.1| CMP/dCMP deaminase, zinc-binding [Halorhodospira halophila SL1]
gi|121589864|gb|ABM62444.1| CMP/dCMP deaminase, zinc-binding protein [Halorhodospira
halophila SL1]
Length = 142
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M+ AL +R+ G V ++V+DG+++G G HAE+ AL AG
Sbjct: 1 MARALELARYAADQGEV----PVGAVVVRDGVLLGEGRNQPIVSRDPTAHAEINALRAAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ GAT YVTLEPC
Sbjct: 57 QAAGAYRLPGATLYVTLEPCFMC 79
>gi|45358911|ref|NP_988468.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Methanococcus maripaludis S2]
gi|45047777|emb|CAF30904.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 360
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 9/214 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ + ++ D + S K + + ++ + D
Sbjct: 140 PFVISNVGMTLDGKLATIDNDSRISGENDLKRVHEIRKEVDAIMVGIGTVLKDDPRLTVH 199
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDPVLALAFRKKNI 265
++N + +P+RI++D + K+ L ++ KT + I E ++ + L +
Sbjct: 200 KINASPKDNPLRIVVDSNLKIPLTARVLNKDAKTVIATTTPISDEKEEKIRKLNEMGIIV 259
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
DL+K++ + G+ +L+EGG + L++ + +Y + V G
Sbjct: 260 LQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGGASS 319
Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
P+ ++ + + LEY
Sbjct: 320 PTYVDGNGFKNVEECTKLELKNYYPLDDGIVLEY 353
>gi|257094052|ref|YP_003167693.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046576|gb|ACV35764.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 153
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
D FM AL ++ +G V L+V+DG+++GRG + G HAE+ A
Sbjct: 2 DDEYFMREALSLAQAAECLGEV----PVGALVVRDGVIVGRGFNSPIGEHDPTAHAEIAA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A G +VTLEPC+
Sbjct: 58 LRDAARTLRNYRLPGCELFVTLEPCAMC 85
>gi|293376812|ref|ZP_06623032.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sanguinis PC909]
gi|325845379|ref|ZP_08168678.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sp. HGF1]
gi|292644564|gb|EFF62654.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sanguinis PC909]
gi|325488594|gb|EGC91004.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sp. HGF1]
Length = 162
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+M AA+ ++ +G + +IVKDG +I RG T+ HAE+ A+
Sbjct: 3 HITYMQAAIEEAKKAQNLGEV----PIGAVIVKDGEIIARGYNLRETSQLSNAHAEMIAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A E T YVTLEPC
Sbjct: 59 AKANEMVGSWRLEDCTLYVTLEPCPMC 85
>gi|157157409|ref|YP_001463881.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
gi|193064070|ref|ZP_03045155.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
gi|194427252|ref|ZP_03059802.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
gi|293446913|ref|ZP_06663335.1| yfhC [Escherichia coli B088]
gi|309794388|ref|ZP_07688811.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 145-7]
gi|157079439|gb|ABV19147.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A]
gi|192929305|gb|EDV82914.1| tRNA-specific adenosine deaminase [Escherichia coli E22]
gi|194414573|gb|EDX30845.1| tRNA-specific adenosine deaminase [Escherichia coli B171]
gi|195183132|dbj|BAG66679.1| putative deaminase [Escherichia coli O111:H-]
gi|291323743|gb|EFE63171.1| yfhC [Escherichia coli B088]
gi|308121844|gb|EFO59106.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 145-7]
gi|323159237|gb|EFZ45226.1| tRNA-specific adenosine deaminase [Escherichia coli E128010]
Length = 178
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|110806489|ref|YP_690009.1| tRNA-specific adenosine deaminase [Shigella flexneri 5 str. 8401]
gi|110616037|gb|ABF04704.1| putative deaminase [Shigella flexneri 5 str. 8401]
Length = 167
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|268318039|ref|YP_003291758.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
4252]
gi|262335573|gb|ACY49370.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
4252]
Length = 158
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
R+M AALR + G V ++VKD ++GRG HAE+ A+
Sbjct: 10 HRRWMEAALREAEQAFEEGEV----PVGAVVVKDDRIVGRGHNCVEQLKDPTAHAEMLAI 65
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
A + RG T YVTLEPC
Sbjct: 66 TAACATLDTKYLRGCTLYVTLEPCPMC 92
>gi|90108580|pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
gi|90108581|pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 9 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 66
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 67 GGLVMQNYRLIDATLYVTLEPCVMC 91
>gi|323978411|gb|EGB73496.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli TW10509]
Length = 167
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|322383121|ref|ZP_08056948.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321152783|gb|EFX45409.1| tRNA specific adenosine deaminase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 157
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
++M A+ + T + +IV +G +IGRG T+ HAE+ A+
Sbjct: 7 EEHEQWMQEAISEALKA--ETIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAI 64
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA E R T YVTLEPC
Sbjct: 65 REASEYLRAWRLLNCTLYVTLEPCPMC 91
>gi|307132102|ref|YP_003884118.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937]
gi|306529631|gb|ADM99561.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937]
Length = 167
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M D +M AL ++ G V ++V+ +IG G H
Sbjct: 1 MSSQMDDEFWMRHALTLAQRAWDAGEV----PVGAVLVRGDKIIGEGWNRPISRNDPTAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ AL++ G+ + T Y+TLEPC
Sbjct: 57 AEIMALQQGGQALQNYRLLDTTLYITLEPCVMC 89
>gi|148653387|ref|YP_001280480.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter sp. PRwf-1]
gi|148572471|gb|ABQ94530.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter sp. PRwf-1]
Length = 190
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D FM AL ++ G + V ++V D +IG G HAEV AL
Sbjct: 34 DVGFMRRALALAQQ--GASQEEVPVGAVLVCDNKIIGEGFNQPITTSDPTAHAEVVALRC 91
Query: 63 AGEEAR------GATAYVTLEPCSHY 82
A + + T YVTLEPC+
Sbjct: 92 ACQTLQNYRLPPNTTLYVTLEPCTMC 117
>gi|301154746|emb|CBW14209.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae
T3T1]
Length = 172
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
S D +FM AL + +G V ++V D G ++G G + HA
Sbjct: 2 RSDLDEKFMQHALMLADRAEALGEI----PVGAVLVDDEGNILGEGWNLSIIEHDPTAHA 57
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL A + + T YVTLEPC+
Sbjct: 58 EIVALRNAAQNIQNYRLLNTTLYVTLEPCTMC 89
>gi|157144506|ref|YP_001451825.1| tRNA-specific adenosine deaminase [Citrobacter koseri ATCC BAA-895]
gi|157081711|gb|ABV11389.1| hypothetical protein CKO_00224 [Citrobacter koseri ATCC BAA-895]
Length = 180
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 21 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQ 78
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 79 GGLVLQNYRLLDTTLYVTLEPCVMC 103
>gi|242095760|ref|XP_002438370.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor]
gi|241916593|gb|EER89737.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor]
Length = 1607
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 21/203 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ P V ++V++G +I RG HAE+ +
Sbjct: 1407 KVDELFMREALLEAQRAA-DIWEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCI 1464
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSG- 113
EA + + T YVTLEPC+ G + G ++ D VR+
Sbjct: 1465 REASNKLKTWRLADTTLYVTLEPCAMCAGAILQARIDTVVWGAPNKLLGADGSWVRLFPG 1524
Query: 114 -------RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
G V + L+ Q
Sbjct: 1525 DGQTNTLDSTNQSKAAGP-VHPFHPKITIRRGVLSTECSEIMQQFFQLRRKKPQSPPQAH 1583
Query: 167 AGCGSVPITGFISKNQVHLLRAQ 189
P+ F + +
Sbjct: 1584 RHGHHHPVKFFSKMHHMFGTIFC 1606
>gi|170019158|ref|YP_001724112.1| tRNA-specific adenosine deaminase [Escherichia coli ATCC 8739]
gi|169754086|gb|ACA76785.1| CMP/dCMP deaminase zinc-binding [Escherichia coli ATCC 8739]
Length = 167
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|291537693|emb|CBL10805.1| Cytosine/adenosine deaminases [Roseburia intestinalis M50/1]
Length = 154
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ D ++M AA+R ++ L + C+IV+D +I RG HAE+ A+
Sbjct: 2 NQDEKYMKAAIRQAKKAYAL--DEVPIGCVIVQDDKIIARGYNRRNTEGNTLAHAELTAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + T YVTLEPC
Sbjct: 60 RKASKKTGDWRLEDCTMYVTLEPCQMC 86
>gi|85712706|ref|ZP_01043751.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
gi|85693438|gb|EAQ31391.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145]
Length = 179
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ D +M AL + V ++V + +++G G HAE QA+
Sbjct: 16 TTDEIYMQRALELAHKAADEDEV--PVGAVLVLNDMIVGEGYNQVITLSDPSAHAEAQAI 73
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ +T YVTLEPC+
Sbjct: 74 RAAGKNVDNYRLTDSTLYVTLEPCAMC 100
>gi|145698301|ref|NP_417054.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
substr. MG1655]
gi|170082169|ref|YP_001731489.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
substr. DH10B]
gi|170682913|ref|YP_001744748.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
gi|191167978|ref|ZP_03029780.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
gi|194437606|ref|ZP_03069702.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
gi|238901724|ref|YP_002927520.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
gi|253772543|ref|YP_003035374.1| tRNA-specific adenosine deaminase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256021756|ref|ZP_05435621.1| tRNA-specific adenosine deaminase [Escherichia sp. 4_1_40B]
gi|260856653|ref|YP_003230544.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
11368]
gi|260869246|ref|YP_003235648.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
11128]
gi|297516926|ref|ZP_06935312.1| tRNA-specific adenosine deaminase [Escherichia coli OP50]
gi|307139195|ref|ZP_07498551.1| tRNA-specific adenosine deaminase [Escherichia coli H736]
gi|307313870|ref|ZP_07593486.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
gi|150421688|sp|P68398|TADA_ECOLI RecName: Full=tRNA-specific adenosine deaminase
gi|150421691|sp|P68397|TADA_SHIFL RecName: Full=tRNA-specific adenosine deaminase
gi|145693172|gb|AAC75612.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
substr. MG1655]
gi|169890004|gb|ACB03711.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12
substr. DH10B]
gi|170520631|gb|ACB18809.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5]
gi|190901985|gb|EDV61732.1| tRNA-specific adenosine deaminase [Escherichia coli B7A]
gi|194423412|gb|EDX39403.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1]
gi|238863717|gb|ACR65715.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952]
gi|253323587|gb|ACT28189.1| CMP/dCMP deaminase zinc-binding [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|257755302|dbj|BAI26804.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str.
11368]
gi|257765602|dbj|BAI37097.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str.
11128]
gi|260448361|gb|ACX38783.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli DH1]
gi|306906371|gb|EFN36886.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W]
gi|313651052|gb|EFS15452.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str.
2457T]
gi|313848716|emb|CAQ32934.2| tRNA-specific adenosine deaminase monomer, subunit of
tRNA-specific adenosine deaminase [Escherichia coli
BL21(DE3)]
gi|315061878|gb|ADT76205.1| tRNA-specific adenosine deaminase [Escherichia coli W]
gi|320186358|gb|EFW61092.1| tRNA-specific adenosine-34 deaminase [Shigella flexneri CDC
796-83]
gi|320200123|gb|EFW74712.1| tRNA-specific adenosine-34 deaminase [Escherichia coli EC4100B]
gi|323377541|gb|ADX49809.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli KO11]
gi|323936299|gb|EGB32590.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli E1520]
gi|323941178|gb|EGB37363.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli E482]
gi|323944616|gb|EGB40684.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli H120]
gi|323961174|gb|EGB56787.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli H489]
gi|323971115|gb|EGB66362.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli TA007]
gi|324113086|gb|EGC07062.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia fergusonii B253]
gi|324118231|gb|EGC12127.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli E1167]
gi|332092598|gb|EGI97670.1| tRNA-specific adenosine deaminase [Shigella boydii 3594-74]
gi|332344434|gb|AEE57768.1| tRNA-specific adenosine deaminase [Escherichia coli UMNK88]
gi|332756134|gb|EGJ86485.1| tRNA-specific adenosine deaminase [Shigella flexneri 2747-71]
gi|332765914|gb|EGJ96125.1| tRNA-specific adenosine deaminase monomer [Shigella flexneri
2930-71]
gi|333002351|gb|EGK21915.1| tRNA-specific adenosine deaminase [Shigella flexneri K-272]
gi|333016173|gb|EGK35505.1| tRNA-specific adenosine deaminase [Shigella flexneri K-227]
gi|333016472|gb|EGK35803.1| tRNA-specific adenosine deaminase [Shigella flexneri K-304]
Length = 167
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|271501609|ref|YP_003334635.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586]
gi|270345164|gb|ACZ77929.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586]
Length = 170
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M D +M AL ++ G V ++V+ VIG G G H
Sbjct: 1 MSSPMDDEFWMRHALSLAQRAWDEGEV----PVGAVLVQGDRVIGEGWNRPIGRHDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL++ G+ T Y+TLEPC
Sbjct: 57 AEIMALQQGGQVLQNYRLLDTTLYITLEPCVMC 89
>gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
Length = 556
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--TAYGGCP--HAEV 57
P DAR+M AL +R P V ++V+ G V+GRG T G P HAE+
Sbjct: 398 PAPDEDARWMRLALNEARRAA-ERGELP-VGAVVVRGGAVLGRGHNTTRESGDPSAHAEL 455
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A G T +VTLEPC
Sbjct: 456 HAIRQAAAALGDWRLAGCTLFVTLEPCPMC 485
>gi|225575495|ref|ZP_03784105.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
10507]
gi|225037292|gb|EEG47538.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM
10507]
Length = 183
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
++ ++M A+R ++ L + C+IV DG +I RG HAE+
Sbjct: 24 MTEQ-EKYMREAIRQAKKAWAL--DEVPIGCVIVFDGKIIARGYNRRNTDRNTLSHAELN 80
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + G T YVTLEPC
Sbjct: 81 AIKKASKKLGDWRLEGCTMYVTLEPCQMC 109
>gi|20093538|ref|NP_613385.1| pyrimidine reductase [Methanopyrus kandleri AV19]
gi|19886379|gb|AAM01315.1| Pyrimidine reductase [Methanopyrus kandleri AV19]
Length = 235
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 12/219 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + + ++ D + A S +VH LRA+ DA+ VGI TV DDP
Sbjct: 1 MPRPKVLYNVGMTADGKVVTAAGDSRISGE-EDLKEVHRLRAEHDAVAVGINTVRKDDPM 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
L RL P+R++ D + LD ++++TA P +++ DP K+ +
Sbjct: 60 LNVRLVE--GEDPIRVVFDTECSIPLDCRLVRTARDIPTVVLCAEADPGRVEKLEKRGVK 117
Query: 267 IIYCDCRDLKKLLTI----LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + + L GV +LL+EGG +A SF+ L+D + + +++G
Sbjct: 118 VEEVGACEDGVDVERGLELLYDMGVRTLLLEGGPTLAWSFLKRGLIDEFRVAVAPVLVGG 177
Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+P+E + R + G DV L Y
Sbjct: 178 SDALTPVEGEGFPRVDLGVGLELKRVERVGRDVVLWYEV 216
>gi|227499915|ref|ZP_03930008.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
gi|227218024|gb|EEI83297.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098]
Length = 169
Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
S D FM A+ +R + V +IV DG +IGRG HAE+
Sbjct: 11 KFSEEDYFFMGEAINEARLARFI--EEVPVGAVIVLDGKIIGRGHNYTFKGKSALKHAEI 68
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA AT YVT+EPCS
Sbjct: 69 MAIKEASAYIDDFRLERATMYVTMEPCSMC 98
>gi|254168441|ref|ZP_04875285.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Aciduliprofundum boonei T469]
gi|197622496|gb|EDY35067.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Aciduliprofundum boonei T469]
Length = 217
Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 10/218 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+
Sbjct: 1 MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60
Query: 207 LT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT + +P+R++LD ++ +++++ + + L I
Sbjct: 61 LTVKEKYVVNAKNPVRVVLDSKLRIPQNARVLNSMAKTIIATTEN-----AKLGELNAEI 115
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
I + DL+ LL L RG+ S++VEGG V SF+ LVD + ++ +VIG G
Sbjct: 116 VICGKNKVDLRCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGGGAS 175
Query: 326 PSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNL 359
G +N + GS + L Y ++
Sbjct: 176 SLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRDE 213
>gi|239825602|ref|YP_002948226.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
gi|239805895|gb|ACS22960.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70]
Length = 160
Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A+ ++ G + +IV+DG +I R T HAE+ A+
Sbjct: 4 DEYYMRLAIEEAKKAEQIGEV----PIGAIIVQDGHIIARAHNLRETEQRAIAHAEILAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC+
Sbjct: 60 DKACKEVGSWRLEDATLYVTLEPCAMC 86
>gi|325479006|gb|EGC82107.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 169
Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
S D FM A+ +R + V +IV G +IGRG HAE+
Sbjct: 11 NFSKMDMFFMQEAISEARLARFV--EEVPVGAVIVYKGEIIGRGHNYTYKGKSALKHAEI 68
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA E T YVT+EPCS
Sbjct: 69 MAIKEASEYMDDFRLEECTMYVTMEPCSMC 98
>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
SmR1]
gi|300074312|gb|ADJ63711.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae
SmR1]
Length = 185
Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D M AAL +R +G V ++VKDG+VI G G HAE+
Sbjct: 16 EADLLHMRAALEQARHAWALGEV----PVGAVVVKDGVVIATGFNQPIGKHDPTAHAEIM 71
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
AL A E G YVTLEPC
Sbjct: 72 ALRRAAEILGNYRLPGCELYVTLEPCVMCS 101
>gi|56418551|ref|YP_145869.1| hypothetical protein GK0016 [Geobacillus kaustophilus HTA426]
gi|261417515|ref|YP_003251197.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp.
Y412MC61]
gi|297528391|ref|YP_003669666.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
gi|319765173|ref|YP_004130674.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp.
Y412MC52]
gi|56378393|dbj|BAD74301.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261373972|gb|ACX76715.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp.
Y412MC61]
gi|297251643|gb|ADI25089.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3]
gi|317110039|gb|ADU92531.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp.
Y412MC52]
Length = 165
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A+ ++ G + +IV+DG VI R T HAE+
Sbjct: 2 NTDEYYMRLAMEEAKKAEQIGEV----PIGAVIVQDGRVIARAHNLRETEQRAIAHAEIL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA AT YVTLEPC+
Sbjct: 58 AIDEACRATGSWRLERATLYVTLEPCAMC 86
>gi|253577340|ref|ZP_04854657.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843240|gb|EES71271.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
str. D14]
Length = 165
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+M+ A+R +R G + +IV+ ++GRG G HAE+ A+
Sbjct: 18 HEYWMAEAIREARKAEAIGEV----PIGAVIVRGDEIVGRGHNLRESSLDGTAHAEMIAI 73
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA E YVTLEPC
Sbjct: 74 REASERLGAWRLLHCRLYVTLEPCPMC 100
>gi|88703683|ref|ZP_01101399.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
KT71]
gi|88702397|gb|EAQ99500.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis
KT71]
Length = 167
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
++ FM+ AL+ ++ G V L+V+DG ++G G A G HAE
Sbjct: 17 MTDVQPDFMARALQLAKEAAEAGEV----PVGALVVQDGRILGEGRNAQIGATDPTAHAE 72
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL A GAT YVTLEPCS
Sbjct: 73 INALRAAASALDNYRMPGATLYVTLEPCSMC 103
>gi|307245435|ref|ZP_07527523.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307254389|ref|ZP_07536227.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258848|ref|ZP_07540580.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306853776|gb|EFM85993.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862688|gb|EFM94644.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867199|gb|EFM99055.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 196
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
+S D FM AL + G V ++V +G +IG G H
Sbjct: 35 TISEQDIHFMRYALELADRAEAIGEI----PVGAVLVDQEGNIIGEGWNQVIQLSDPSAH 90
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +AG+ T Y TLEPC+
Sbjct: 91 AEMLAIRQAGKVQRNYRLLDCTLYATLEPCTMC 123
>gi|197335350|ref|YP_002155408.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
gi|197316840|gb|ACH66287.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11]
Length = 174
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
+M A+ + G V +IV D +IG G + HAE+ A+++
Sbjct: 12 FYMQRAMELAAIAEQEGEV----PVGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQ 67
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG + AT YVTLEPC
Sbjct: 68 AGSKIENYRLVDATLYVTLEPCPMC 92
>gi|323694203|ref|ZP_08108379.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
WAL-14673]
gi|323501676|gb|EGB17562.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum
WAL-14673]
Length = 155
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
+ D ++M AA+R ++ +G + C+IV +G +IGRG HAE+
Sbjct: 2 TDDEKYMRAAIREAKKAYALGEV----PIGCVIVFEGKIIGRGYNRRIADKNVLSHAEIN 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + G T Y+TLEPC
Sbjct: 58 AIKKACKKMGDWRLEGCTMYITLEPCPMC 86
>gi|184157936|ref|YP_001846275.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
gi|332872773|ref|ZP_08440739.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6014059]
gi|183209530|gb|ACC56928.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
gi|322508255|gb|ADX03709.1| Putative deaminase [Acinetobacter baumannii 1656-2]
gi|323517881|gb|ADX92262.1| cytosine/adenosine deaminase [Acinetobacter baumannii
TCDC-AB0715]
gi|332739070|gb|EGJ69931.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6014059]
Length = 167
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAKQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|19075322|ref|NP_587822.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe 972h-]
gi|74627116|sp|P87241|RIB2_SCHPO RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
gi|2213559|emb|CAB09771.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe]
Length = 405
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQAL----- 60
+M AL ++ T + V +IV++G ++ G + G HAE A+
Sbjct: 258 HEEYMLKALNEAKKCEP-TDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFML 316
Query: 61 EEAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
+ + GA Y T+EPCS + C I++ VV+ +PD+ V G+ L
Sbjct: 317 KNPTDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLL 376
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
+ GI+V + + A +
Sbjct: 377 KKAGIVVIEKLTFQDDCLREAVRGHPPKH 405
>gi|114705782|ref|ZP_01438685.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
HTCC2506]
gi|114538628|gb|EAU41749.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi
HTCC2506]
Length = 148
Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
RFM AL +R G V +IV+DG +I + HAE+ A+
Sbjct: 3 RRFMDEALEEARRAATRGEV----PVGAVIVRDGEIIAKAGNETRAAKDPTAHAELLAIR 58
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
A E YVTLEPC+
Sbjct: 59 RACLALEAERLTDCDLYVTLEPCAMC 84
>gi|322834117|ref|YP_004214144.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
gi|321169318|gb|ADW75017.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602]
Length = 180
Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D +M A+ + G V ++V D VIG G G HAE+
Sbjct: 10 NDDEHWMRQAMNLALKAQDEGEV----PVGAVLVLDNQVIGEGWNRSIGHHDPTAHAEIM 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL + G AT YVTLEPC
Sbjct: 66 ALRQGGNAVQNYRLLNATLYVTLEPCVMC 94
>gi|284162163|ref|YP_003400786.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
gi|284012160|gb|ADB58113.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Archaeoglobus profundus DSM 5631]
Length = 222
Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 11/220 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE- 206
R + +A S D I + I+ +V LRA+SDAI+VGIGTVL+D+P+
Sbjct: 1 MRPFTFINVASSVDGKISNEKRIQLRISCEEDLKRVDELRAKSDAIMVGIGTVLSDNPKL 60
Query: 207 -------LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV-IIVTENDDPVLAL 258
RL ++ +P+R+++D ++ LD+K++ + V + N + V L
Sbjct: 61 TVKSEELRKRRLEEGRDANPIRVVVDSKCRIPLDAKVLDESAKTIVAVSRIANSEKVNTL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ + D DLK L+ L GV L+VEGGA + + + LVD I +Y +
Sbjct: 121 RRMGVDVFVAGDDKVDLKALVEYLYKIGVRVLMVEGGATLNWAMLREGLVDEIYVYYGNM 180
Query: 319 VIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIG 356
+IG P+ ++ + + G + +
Sbjct: 181 IIGGSKAPTVVDGMSFDPPISLDLLDVRKLGRGILTRWRV 220
>gi|167464544|ref|ZP_02329633.1| possible nucleoside deaminase [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 152
Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
++M A+ + T + +IV +G +IGRG T+ HAE+ A+
Sbjct: 2 EEHEQWMQEAISEALKA--ETIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAI 59
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA E R T YVTLEPC
Sbjct: 60 REASEYLRAWRLLNCTLYVTLEPCPMC 86
>gi|240145078|ref|ZP_04743679.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
gi|257202749|gb|EEV01034.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82]
gi|291537828|emb|CBL10939.1| Cytosine/adenosine deaminases [Roseburia intestinalis XB6B4]
Length = 154
Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ D ++M AA+R ++ L + C+IV++ +I RG HAE+ A+
Sbjct: 2 NQDEKYMKAAIRQAKKAYAL--DEVPIGCVIVQNDKIIARGYNRRNTEGNTLAHAELTAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + T YVTLEPC
Sbjct: 60 RKASKKTGDWRLEDCTMYVTLEPCQMC 86
>gi|314937113|ref|ZP_07844460.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
hominis subsp. hominis C80]
gi|313655732|gb|EFS19477.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
hominis subsp. hominis C80]
Length = 163
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A+ ++ G + +IVKD +I R T HAE
Sbjct: 2 TNDEFYMKCAIEEAKKARQLGEV----PIGAVIVKDNEIISRAHNLRETLQQPTAHAEHL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVIGSWRLEDCTLYVTLEPCVMCAGTVVMSR 94
>gi|193068331|ref|ZP_03049294.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
gi|260845189|ref|YP_003222967.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
12009]
gi|192958283|gb|EDV88723.1| tRNA-specific adenosine deaminase [Escherichia coli E110019]
gi|257760336|dbj|BAI31833.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str.
12009]
Length = 167
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M AL ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|311694940|gb|ADP97813.1| cytidine/deoxycytidylate deaminase family protein [marine
bacterium HP15]
Length = 167
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
+ D R+M+ AL+ + G V ++V DG IG G A HAE+
Sbjct: 5 TPEDERWMNRALQLAGEAAAKGEV----PVGAVVVLDGKEIGAGFNAPISGCDPTAHAEI 60
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
+AL +A AT YVTLEPC+
Sbjct: 61 RALRDAAARVGNYRLPDATLYVTLEPCTMC 90
>gi|59711257|ref|YP_204033.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
gi|59479358|gb|AAW85145.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114]
Length = 171
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
+M A+ + G V +IV D +IG G + HAE+ A+++
Sbjct: 12 FYMQRAMELAAIAEQEGEV----PVGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQ 67
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG + AT YVTLEPC
Sbjct: 68 AGSKIENYRLVDATLYVTLEPCPMC 92
>gi|331092011|ref|ZP_08340842.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402212|gb|EGG81783.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 155
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ D ++M A++ ++ + P + C+IV + +I RG T HAE+ A+
Sbjct: 2 NQDEKYMREAIKQAKKA-YEINEVP-IGCVIVCEDKIISRGYNRRTTDKNPLAHAEMIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
++A + T YVTLEPC
Sbjct: 60 KKASKKVGDWRLEDCTMYVTLEPCQMCS 87
>gi|114793489|pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
gi|114793490|pdb|2AZN|B Chain B, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
gi|114793491|pdb|2AZN|C Chain C, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
gi|114793492|pdb|2AZN|D Chain D, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
gi|114793493|pdb|2AZN|E Chain E, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
gi|114793494|pdb|2AZN|F Chain F, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-
Pyrimidinone 5-Phosphate Reductase
Length = 219
Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 11/218 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+I + + D + I+ +VH +RA D I VGIGTVL DDP LT
Sbjct: 4 PYIISNVGXTLDGKLAT-INNDSRISCEEDLIRVHKIRANVDGIXVGIGTVLKDDPRLTV 62
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKKNI 265
+ +P+RI++D ++ L+++++ + E + + L +
Sbjct: 63 HKIKS-DRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDXGVEV 121
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
DLKKL IL +G+ S+L+EGG + LVD + +Y + + G
Sbjct: 122 VKCGRGKVDLKKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGKEA 181
Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
P+ ++ + G + LE+ K
Sbjct: 182 PTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK 219
>gi|239637751|ref|ZP_04678718.1| tRNA-specific adenosine deaminase [Staphylococcus warneri L37603]
gi|239596653|gb|EEQ79183.1| tRNA-specific adenosine deaminase [Staphylococcus warneri L37603]
Length = 168
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
D +M A++ ++ +G + +IVK+G VI R T HAE
Sbjct: 2 ETDEYYMKLAIQEAKKAELLGEV----PIGAIIVKNGHVIARAHNLRETMQQPTAHAEHL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEDCTLYVTLEPCVMCAGTIVMSR 94
>gi|311028951|ref|ZP_07707041.1| CMP/dCMP deaminase zinc-binding protein [Bacillus sp. m3-13]
Length = 161
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
D FM A+ ++ + ++V DG VI +G HAE+ ++
Sbjct: 2 QDEHFMKLAIEEAKKA--EALKEVPIGAVLVHDGKVISKGYNLRETTQRSITHAEIMVID 59
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A E AT YVTLEPC
Sbjct: 60 QACEALQTWRLEEATLYVTLEPCPMC 85
>gi|254513988|ref|ZP_05126049.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR5-3]
gi|219676231|gb|EED32596.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR5-3]
Length = 150
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+S+ D FM AL ++ G V ++V+ ++G G A HAE
Sbjct: 1 MSAHDL-FMLRALDLAQEAASRGEV----PVGAVVVEGDRILGEGRNAQIASMDPTAHAE 55
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL A GAT YVTLEPCS
Sbjct: 56 INALRAASALVKNYRIPGATLYVTLEPCSMC 86
>gi|89094120|ref|ZP_01167063.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
gi|89081595|gb|EAR60824.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92]
Length = 168
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M S D +M AL + L V L+V DG V+G G HAE
Sbjct: 1 MDTSKTDLHWMERALELADRAEQLNEV--PVGALVVLDGEVVGEGWNHPISGNDPTAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ AL A + GA +VT+EPC+
Sbjct: 59 MMALRAAAQKVGNYRLVGAELFVTIEPCTMCS 90
>gi|225026664|ref|ZP_03715856.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
gi|224956034|gb|EEG37243.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353]
Length = 178
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M + D +FM A++ ++ + + C+IV DG +I RG HAE
Sbjct: 6 MRKYTEDEKFMKEAIKQAKKA--EAIGDVPIGCVIVHDGKIIARGYNKRNKDKTVLAHAE 63
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+++A + T Y+TLEPC
Sbjct: 64 LLAMKKACKKLGDWRLEDCTMYITLEPCQMC 94
>gi|312173235|emb|CBX81490.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC
BAA-2158]
Length = 166
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSF-DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
++ D +M ALR +R G V ++V D VIG G G HA
Sbjct: 1 MTDHNDEYWMRHALRLARRAWDEGEV----PVGAVLVLDNQVIGEGWNRPIGHHDPTAHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL + G+ T YVTLEPC
Sbjct: 57 EMMALRQGGKMIENYRLLDTTLYVTLEPCVMC 88
>gi|251788710|ref|YP_003003431.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
gi|247537331|gb|ACT05952.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591]
Length = 168
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M D +M AL ++ G V ++V+ G VIG G G H
Sbjct: 1 MSSPMDDEFWMRHALSLAQRAWDEGEV----PVGAVLVQGGNVIGEGWNRPIGRHDPTAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ AL++ G+ + T Y+TLEPC
Sbjct: 57 AEIMALQQGGQTLQNYRLLDTTLYITLEPCVMC 89
>gi|308050412|ref|YP_003913978.1| tRNA-adenosine deaminase [Ferrimonas balearica DSM 9799]
gi|307632602|gb|ADN76904.1| tRNA-adenosine deaminase [Ferrimonas balearica DSM 9799]
Length = 170
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
++M+ A++ + +G V ++V+DG VI G HAE+
Sbjct: 2 EQHQKWMAHAMKLAEQAEALGEV----PVGAVLVRDGEVIAEGFNQSITLNDPSAHAEML 57
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
L AG+ T YVTLEPCS
Sbjct: 58 CLRAAGQALENYRLLDTTLYVTLEPCSMC 86
>gi|23097839|ref|NP_691305.1| hypothetical protein OB0384 [Oceanobacillus iheyensis HTE831]
gi|22776063|dbj|BAC12340.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 159
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + FMS A+ + ++ +I+KD +I G HAE
Sbjct: 1 MQTNPNHQLFMSKAIELAVSNISQGGG--PFGAVIIKDNKIIAEGTNQVTNYNDPTAHAE 58
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
VQA+ +A E+ +G T Y + EPC
Sbjct: 59 VQAIRQACEKLSTFELKGCTLYTSCEPCPMC 89
>gi|229826609|ref|ZP_04452678.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
49176]
gi|229789479|gb|EEP25593.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC
49176]
Length = 167
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ D ++M A++ + L + C+IV DG +I RG HAE+ A+
Sbjct: 2 TTDEKWMKEAIKQAEKAKKLDEV--PIGCVIVLDGKIIARGYNRRNTDHTSLAHAEMMAI 59
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
++A ++ R T YVTLEPC
Sbjct: 60 KKACKKIRDWRLEKCTLYVTLEPCQMC 86
>gi|227513704|ref|ZP_03943753.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
gi|227522506|ref|ZP_03952555.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
gi|227083023|gb|EEI18335.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577]
gi|227090328|gb|EEI25640.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290]
Length = 157
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + D RFM AL ++ +G + +I +DG +IGRG G H
Sbjct: 1 MSQNK-DERFMKMALIEAQKAYLIGEV----PIGAVITQDGQIIGRGHNLREHLNDGVAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
AE+ A+EEA R YVT+EPC
Sbjct: 56 AEIMAIEEACRYLRSWRLVDCELYVTIEPCLMCS 89
>gi|167742541|ref|ZP_02415315.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
14]
gi|167821693|ref|ZP_02453373.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
91]
Length = 60
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
M S D M+ ALR + + T NP V C+I + +G G G PHAEV A
Sbjct: 1 MSAFSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60
>gi|332851789|ref|ZP_08433714.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6013150]
gi|332865831|ref|ZP_08436615.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6013113]
gi|332729796|gb|EGJ61131.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6013150]
gi|332735043|gb|EGJ66128.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acinetobacter baumannii 6013113]
Length = 170
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAEQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|260555185|ref|ZP_05827406.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
gi|260411727|gb|EEX05024.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606]
Length = 167
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAEQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|169836056|ref|ZP_02869244.1| riboflavin biosynthesis protein RibD [candidate division TM7
single-cell isolate TM7a]
Length = 66
Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSP 86
V ++V+DG VIG G Y G PHAEV ALEEA ++ AT YVTLEPCSHYG++P
Sbjct: 1 MVGAVVVQDGKVIGTGYHKYFGGPHAEVYALEEAAQNSKDLSNATIYVTLEPCSHYGKTP 60
Query: 87 PCAQFI 92
PCA+ +
Sbjct: 61 PCAEKL 66
>gi|91225086|ref|ZP_01260308.1| YfhC protein [Vibrio alginolyticus 12G01]
gi|91190029|gb|EAS76300.1| YfhC protein [Vibrio alginolyticus 12G01]
Length = 169
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ + G V ++VKDG +I G G HAE+Q L +AG
Sbjct: 1 MRRAMELAEQAEAEGEV----PVGAVLVKDGEIIAEGRNRSIGTHDATAHAEIQTLRKAG 56
Query: 65 EEARG-----ATAYVTLEPCSHY 82
++ T YVTLEPC
Sbjct: 57 QKLENYRLLDTTLYVTLEPCPMC 79
>gi|298674087|ref|YP_003725837.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanohalobium evestigatum Z-7303]
gi|298287075|gb|ADI73041.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanohalobium evestigatum Z-7303]
Length = 234
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 13/233 (5%)
Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
R I L AVS D I V I+G +V L+ +SD ++VGIG
Sbjct: 1 MNEKQTNTINRPFIFLNAAVSADGKISTKERKQVKISGDNDFERVDELKKESDGVMVGIG 60
Query: 199 TVLADDP--------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
TVLADDP R N + +P RI++D + + +D+ I K VI V++
Sbjct: 61 TVLADDPSLTIKSENRKKYRKNNGLDENPARIVVDSNGRTPIDADIFKKGEGKRVIAVSK 120
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
++K I+ + + K L+ L G+ L+VEGG+ + S ++ +LVD
Sbjct: 121 CAPEKKIKTLKEKADIIVAGNDKVDLKILVEKLKDMGIEKLMVEGGSNLNWSLLSLKLVD 180
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGKN 358
I + I+IG PS + + V + + + + +
Sbjct: 181 EIHAFIGNIIIGGSTAPSLVGGSGFPETDMLKLKLVDFEQMDDGLLVRWQVEK 233
>gi|169796135|ref|YP_001713928.1| putative deaminase [Acinetobacter baumannii AYE]
gi|301597400|ref|ZP_07242408.1| putative deaminase [Acinetobacter baumannii AB059]
gi|169149062|emb|CAM86939.1| putative deaminase [Acinetobacter baumannii AYE]
Length = 167
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAKQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|317049171|ref|YP_004116819.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
gi|316950788|gb|ADU70263.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
Length = 165
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M ALR +R G V ++V+ VIG G G HAE+ AL
Sbjct: 6 DEYWMRHALRLARLAWEQGEV----PVGAVLVQGDTVIGEGWNRPIGQHDPTAHAEIMAL 61
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ G+ T YVTLEPC
Sbjct: 62 RQGGKVLENYRLLDTTLYVTLEPCVMC 88
>gi|292900205|ref|YP_003539574.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
gi|291200053|emb|CBJ47178.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946]
Length = 164
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M ALR +R G V ++V D VIG G G HAE+ AL
Sbjct: 11 DEYWMRHALRLARRAWDEGEV----PVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 66
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ G+ T YVTLEPC
Sbjct: 67 RQGGKMIENYRLLDTTLYVTLEPCVMC 93
>gi|322436459|ref|YP_004218671.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321164186|gb|ADW69891.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 160
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + +FM A+ + +V L+ +IV+ G VI G+ HAE
Sbjct: 1 MTLPPDHDKFMQQAIDLATQNV-LSGRGGPFGAVIVRAGEVIATGINLVTATNDPTAHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V A+ A E RGAT Y + EPC
Sbjct: 60 VTAIRNACAHLSTFELRGATLYSSCEPCPMC 90
>gi|150402518|ref|YP_001329812.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Methanococcus maripaludis C7]
gi|150033548|gb|ABR65661.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus maripaludis C7]
Length = 360
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 78/218 (35%), Gaps = 9/218 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
++ + ++ D + S K + + ++ + D
Sbjct: 138 MVPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKDVDAILVGIGTVLKDDPRLT 197
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDPVLALAFRKK 263
++N + +P+RI++D K+SL+++ KT + I E ++ + L
Sbjct: 198 VHKINASPKDNPLRIVVDSSLKISLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGI 257
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ DL+K++ + G+ +L+EGG + L++ + +Y + V G
Sbjct: 258 TVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGGA 317
Query: 324 GIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
P+ ++ + + LEY
Sbjct: 318 NSPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYRV 355
>gi|218132702|ref|ZP_03461506.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
43243]
gi|217992428|gb|EEC58431.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC
43243]
Length = 160
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
+ D ++M A++ +R +G + + C+IV +I RG HAE+
Sbjct: 7 NDDEKYMKEAIKQARKAYKIGES----PIGCVIVYQNKIIARGYNRRNIDKTTLGHAEIT 62
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 63 AIRKASKVIGDWRLEDCTIYVTLEPCQMC 91
>gi|148262140|ref|YP_001228846.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
gi|146395640|gb|ABQ24273.1| tRNA-adenosine deaminase [Geobacter uraniireducens Rf4]
Length = 176
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
D +M +A+R + G + +IV+DG +I RG G HAE+
Sbjct: 20 KDDVWWMGSAIREAEKAAERGEV----PIGAVIVRDGKIISRGYNLREGKQDPAAHAELI 75
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + G T YVTLEPC
Sbjct: 76 AIRKAAKKLGNWRLAGTTLYVTLEPCIMC 104
>gi|91201429|emb|CAJ74489.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 158
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
SS FM A++ + + V +IV D +I R HAE+ A
Sbjct: 7 SSNHEYFMRQAIKEAEKAADINEV--PVGAVIVYDNRIIARAHNQREMLKDPTAHAEMIA 64
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ + E G+T YVTLEPC
Sbjct: 65 ITQGAEYLQNWRLTGSTIYVTLEPCVMC 92
>gi|260550109|ref|ZP_05824323.1| cytosine/adenosine deaminase [Acinetobacter sp. RUH2624]
gi|260406864|gb|EEX00343.1| cytosine/adenosine deaminase [Acinetobacter sp. RUH2624]
Length = 167
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAEQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A + + AT YVTLEPC+
Sbjct: 57 EIQAIRSACQLLKNYRLPEDATLYVTLEPCTMC 89
>gi|290476033|ref|YP_003468930.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii
SS-2004]
gi|289175363|emb|CBJ82166.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii
SS-2004]
Length = 169
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D +M A+ + + V ++V + +I G T + HAE
Sbjct: 1 MTEIYSDEYWMRRAMELAMQAQ--SQDEIPVGAVLVANNKIIAEGYNHPITEHDPTAHAE 58
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL G E + T YVTLEPC
Sbjct: 59 IIALRRGGIELQNYRLLNTTLYVTLEPCVMC 89
>gi|301510605|ref|ZP_07235842.1| putative deaminase [Acinetobacter baumannii AB058]
Length = 167
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKLSDEYWMQLAYEQAELAAKQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|319943546|ref|ZP_08017828.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
gi|319743361|gb|EFV95766.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599]
Length = 206
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
S D M A+ + G V ++VK G VI G G HA
Sbjct: 16 SFSELDHAMMRLAMDQALNAQLHGEV----PVGAVLVKAGQVIATGYNHPIGSHDPTAHA 71
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E++ L A E+ +T YVTLEPC
Sbjct: 72 EIRTLRMAAEQLGNYRVGESTLYVTLEPCMMC 103
>gi|206901944|ref|YP_002250953.1| tRNA-specific adenosine deaminase [Dictyoglomus thermophilum
H-6-12]
gi|206741047|gb|ACI20105.1| tRNA-specific adenosine deaminase [Dictyoglomus thermophilum
H-6-12]
Length = 156
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
+SS D+ FM A++ + + G V ++V + +IGRG T HAE
Sbjct: 5 LSSIDSFFMHEAIKEAEKALKKGEV----PVGAVVVFNEKIIGRGYNLRETKKSPILHAE 60
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+E+A ++ T YVTLEPC
Sbjct: 61 IIAIEKAVKKINDWRLYNCTLYVTLEPCIMC 91
>gi|257460844|ref|ZP_05625945.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
RM3268]
gi|257442175|gb|EEV17317.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis
RM3268]
Length = 407
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 66/271 (24%), Positives = 99/271 (36%), Gaps = 57/271 (21%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
D +M ALR + + LT NP+V C+++ + G V+G G G HAE A
Sbjct: 3 DEFYMDLALRAAWRYQALTLPNPAVGCVLLDRGGRVLGIGAHKKAGFLHAEANAVFAALC 62
Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77
L G RGA AYVTLE
Sbjct: 63 DLDVNFAQDFACEYAREFGVKFQNLEALKSALLQPSFAYDFILNRHGGLLRGACAYVTLE 122
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H G++P CA+ + + G+ RVV+ D + + + G + ++G I +
Sbjct: 123 PCAHRGKTPSCAELLAQLGLSRVVIGARDTNAQAA--GGAEILRRGSIEIKFDVCHAAAE 180
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
A + +KI + + + VH LR+ D + VG
Sbjct: 181 ELAEPFYLARESGFCFIKINATLNGAAHGRIG------SEKQRVFVHELRSVCDYVGVGG 234
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
TV AD P L R E S + +D
Sbjct: 235 QTVRADRPTLDVRAAKFDEISALVGSVDKPL 265
>gi|269962366|ref|ZP_06176716.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
gi|269832862|gb|EEZ86971.1| zinc-binding domain protein [Vibrio harveyi 1DA3]
Length = 164
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M A+ + G V ++VKDG ++ G + HAE+Q L +AG
Sbjct: 1 MRRAMELAEQAEAEGEV----PVGAVLVKDGEIVAEGWNRSICAHDATAHAEIQTLRKAG 56
Query: 65 EEARG-----ATAYVTLEPCSHY 82
E T YVTLEPC
Sbjct: 57 EALENYRLLDTTLYVTLEPCPMC 79
>gi|315633684|ref|ZP_07888974.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
33393]
gi|315477726|gb|EFU68468.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC
33393]
Length = 175
Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 1 MPVSSF--DARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGG 51
M S D +FM AL + +G V ++V + G +IG G
Sbjct: 1 MTESQQQLDEQFMRHALMLADKAEALGEI----PVGAVLVSEEGEIIGEGWNLSIIDSDP 56
Query: 52 CPHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAE+ AL + G+ + AT YVTLEPC+
Sbjct: 57 TAHAEIVALRQGGQRLQNYRLLNATLYVTLEPCTMC 92
>gi|253689423|ref|YP_003018613.1| CMP/dCMP deaminase zinc-binding [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756001|gb|ACT14077.1| CMP/dCMP deaminase zinc-binding [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 165
Score = 86.2 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
S D +M AL ++ G V ++V D IG G G HAE+
Sbjct: 2 SNDEYWMRYALTLAQRAQDEGEV----PVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIM 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL + G+ T YVTLEPC
Sbjct: 58 ALRQGGQVLQNYRLLDTTLYVTLEPCIMC 86
>gi|238922727|ref|YP_002936240.1| cytidine and deoxycytidylate deaminase family protein
[Eubacterium rectale ATCC 33656]
gi|238874399|gb|ACR74106.1| cytidine and deoxycytidylate deaminase family protein
[Eubacterium rectale ATCC 33656]
Length = 162
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M ++ D ++M A++ ++ L + C+IV +I RG T H
Sbjct: 1 MEQTNMTQDEKYMKQAIKQAKKAYAL--DEVPIGCVIVAGDKIIARGYNRRNTDKNPLAH 58
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +A + T YVTLEPC
Sbjct: 59 AELSAIRKASKKTGDWRLEECTMYVTLEPCQMC 91
>gi|330686241|gb|EGG97853.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis VCU121]
Length = 168
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
D +M A+ ++ +G + +IVK+ VI R T HAE
Sbjct: 2 ETDEYYMKIAIEEAKKAELLGEV----PIGAIIVKNNHVIARAHNMRETLQQPTAHAEHL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEDCTLYVTLEPCVMCAGTIVMSR 94
>gi|90962204|ref|YP_536120.1| cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
gi|301300462|ref|ZP_07206662.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821398|gb|ABE00037.1| Cytosine/adenosine deaminase [Lactobacillus salivarius UCC118]
gi|300851959|gb|EFK79643.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 166
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
MP++ +FM AL ++ G + C+IVKDG +IGRG +
Sbjct: 1 MPLTDEQKVKFMKEALFEAKLAAKIGEV----PIGCVIVKDGKIIGRGHNLREHSQNATL 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A+EEA E +VTLEPC
Sbjct: 57 HAEMLAIEEANETVNSWRLVDTQLFVTLEPCPMCS 91
>gi|260913765|ref|ZP_05920241.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC
43325]
gi|260632304|gb|EEX50479.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC
43325]
Length = 170
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHA 55
S D ++M AL + +G V ++V +G V+G G HA
Sbjct: 2 RSDLDEKWMRYALELADKAEQLGEI----PVGAVLVDEEGNVLGEGWNLSIIESDPTAHA 57
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL + G+ T YVTLEPC+
Sbjct: 58 EIVALRQGGKTLQNYRLVNTTLYVTLEPCTMC 89
>gi|255994527|ref|ZP_05427662.1| tRNA-specific adenosine deaminase [Eubacterium saphenum ATCC
49989]
gi|255993240|gb|EEU03329.1| tRNA-specific adenosine deaminase [Eubacterium saphenum ATCC
49989]
Length = 151
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
FM AL ++ G V +IVK+G VI + HAE+ A++
Sbjct: 3 EDFMRVALEEAKKAYKQGEV----PVGAVIVKNGKVISKAHNETRQKKNAVAHAEILAID 58
Query: 62 EAGEEARG-----ATAYVTLEPCSHY 82
+A ++ YVTLEPC+
Sbjct: 59 KACKKLENERLVDTEMYVTLEPCAMC 84
>gi|282915881|ref|ZP_06323646.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
D139]
gi|283769715|ref|ZP_06342607.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
H19]
gi|282320177|gb|EFB50522.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
D139]
gi|283459862|gb|EFC06952.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
H19]
Length = 156
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAARLGEV----PIGAVITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|312142718|ref|YP_003994164.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
'sapolanicus']
gi|311903369|gb|ADQ13810.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
'sapolanicus']
Length = 149
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+FD ++M AL +R + ++V D V+GRG HAE+ AL
Sbjct: 2 NFDQKYMQMALAEARKAYQRAEV--PIGAVVVCDDRVVGRGFNLREQTQDPTSHAEIIAL 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + YVTLEPC
Sbjct: 60 KEAAKEQASWRLEDCQLYVTLEPCPMC 86
>gi|292489080|ref|YP_003531967.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
gi|291554514|emb|CBA22074.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430]
Length = 159
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSF-DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
++ D +M ALR +R G V ++V D VIG G G HA
Sbjct: 1 MTDHNDEYWMRHALRLARRAWDEGEV----PVGAVLVLDNQVIGEGWNRPIGHHDPTAHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL + G+ T YVTLEPC
Sbjct: 57 EMMALRQGGKMIENYRLLDTTLYVTLEPCVMC 88
>gi|218680684|ref|ZP_03528581.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidinedea
[Rhizobium etli CIAT 894]
Length = 307
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 128/217 (58%), Positives = 160/217 (73%), Gaps = 1/217 (0%)
Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
V CLIVKD +V+G+ VTA GG PHAE QAL EAGE ARGATAYVTLEPCSH+G++PPCA+
Sbjct: 1 VGCLIVKDSVVVGQAVTAVGGRPHAEPQALAEAGEAARGATAYVTLEPCSHHGKTPPCAE 60
Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKR 149
+I G+ RVV+ V DPD RVSGRG+ L + GI VD + E+EG+ L AYLTRQ + R
Sbjct: 61 ALIAYGVARVVISVTDPDPRVSGRGIAMLREAGIEVDAGVLEAEGRRSLAAYLTRQTKNR 120
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIGT ++DDP LT
Sbjct: 121 PYVTLKLAVSADGMIGREGEGQVAITGPEARAEVQALRAETDAILVGIGTAISDDPLLTV 180
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R GL+ SP+RI+LDP L L S+++ TA PVI
Sbjct: 181 RTPGLEAQSPIRIVLDPSLALPLTSRLVATAREVPVI 217
>gi|229917437|ref|YP_002886083.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
gi|229468866|gb|ACQ70638.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b]
Length = 166
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
D RFM A+ ++ G + C+IVK VI G T HAE+
Sbjct: 2 ERDERFMQLAIEEAKKAEAIGEV----PIGCVIVKGDQVIATGHNRRETDRLAAAHAEMI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+E A E YVTLEPC
Sbjct: 58 AIETANETLGNWRLEDCELYVTLEPCPMC 86
>gi|91776192|ref|YP_545948.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
gi|91710179|gb|ABE50107.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT]
Length = 168
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRG------VTAYGGCPHA 55
++ D FM AL+ ++ G V ++VKDG+VIGRG HA
Sbjct: 9 TAADEDFMRIALQLAQEAALAGEV----PVGAVVVKDGVVIGRGSNAPIAYHDP--SAHA 62
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E++A+ +A G YVTLEPC+
Sbjct: 63 EIRAMRDAAARLGNYRLTGCALYVTLEPCAMC 94
>gi|156973452|ref|YP_001444359.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
gi|156525046|gb|ABU70132.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116]
Length = 164
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M A+ + G V ++VKDG +I G + HAE+Q L +AG
Sbjct: 1 MRRAMELAEQAEAEGEV----PVGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
E T YVTLEPC
Sbjct: 57 EALGNYRLLDTTLYVTLEPCPMC 79
>gi|169633380|ref|YP_001707116.1| putative deaminase [Acinetobacter baumannii SDF]
gi|169152172|emb|CAP01075.1| putative deaminase [Acinetobacter baumannii]
Length = 166
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
+S F D +M A + G V +IV +IG G A G HA
Sbjct: 1 MSKFSDEYWMQLAYEQAELAAEQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHA 56
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QA+ A E + AT YVTLEPC+
Sbjct: 57 EIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 89
>gi|227510688|ref|ZP_03940737.1| possible guanine deaminase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189809|gb|EEI69876.1| possible guanine deaminase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 157
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + D +FM AL ++ +G + +I +DG +IGRG G H
Sbjct: 1 MSQNK-DEKFMKMALIEAQKAYLIGEV----PIGAVITQDGQIIGRGHNLREHLNDGVAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
AE+ A+EEA R YVT+EPC
Sbjct: 56 AEIMAIEEACRYLRSWRLVDCELYVTIEPCLMCS 89
>gi|15803084|ref|NP_289115.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 EDL933]
gi|15832679|ref|NP_311452.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
Sakai]
gi|82777934|ref|YP_404283.1| tRNA-specific adenosine deaminase [Shigella dysenteriae Sd197]
gi|91211884|ref|YP_541870.1| tRNA-specific adenosine deaminase [Escherichia coli UTI89]
gi|110642721|ref|YP_670451.1| tRNA-specific adenosine deaminase [Escherichia coli 536]
gi|117624781|ref|YP_853694.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
gi|187775816|ref|ZP_02798525.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4196]
gi|189009982|ref|ZP_02803540.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4076]
gi|189405037|ref|ZP_02812923.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC869]
gi|189405736|ref|ZP_02823945.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC508]
gi|191172647|ref|ZP_03034186.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
gi|194432153|ref|ZP_03064442.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
gi|218559479|ref|YP_002392392.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
gi|218690674|ref|YP_002398886.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
gi|237705067|ref|ZP_04535548.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
gi|291283784|ref|YP_003500602.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
CB9615]
gi|293415828|ref|ZP_06658471.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
gi|300935691|ref|ZP_07150661.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 21-1]
gi|300974171|ref|ZP_07172489.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 200-1]
gi|309784689|ref|ZP_07679322.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
gi|331648252|ref|ZP_08349342.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
gi|331653994|ref|ZP_08354995.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
gi|331658703|ref|ZP_08359647.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
gi|12516972|gb|AAG57673.1|AE005486_4 putative deaminase [Escherichia coli O157:H7 str. EDL933]
gi|13362896|dbj|BAB36848.1| putative deaminase [Escherichia coli O157:H7 str. Sakai]
gi|81242082|gb|ABB62792.1| putative deaminase [Shigella dysenteriae Sd197]
gi|91073458|gb|ABE08339.1| putative deaminase [Escherichia coli UTI89]
gi|110344313|gb|ABG70550.1| hypothetical protein YfhC [Escherichia coli 536]
gi|115513905|gb|ABJ01980.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1]
gi|187770595|gb|EDU34439.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4196]
gi|189003519|gb|EDU72505.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4076]
gi|189372298|gb|EDU90714.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC869]
gi|189378592|gb|EDU97008.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC508]
gi|190907120|gb|EDV66720.1| tRNA-specific adenosine deaminase [Escherichia coli F11]
gi|194419682|gb|EDX35762.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012]
gi|209762958|gb|ACI79791.1| putative deaminase [Escherichia coli]
gi|209762960|gb|ACI79792.1| putative deaminase [Escherichia coli]
gi|209762962|gb|ACI79793.1| putative deaminase [Escherichia coli]
gi|209762964|gb|ACI79794.1| putative deaminase [Escherichia coli]
gi|209762966|gb|ACI79795.1| putative deaminase [Escherichia coli]
gi|218366248|emb|CAR03995.1| tRNA-specific adenosine deaminase [Escherichia coli S88]
gi|218428238|emb|CAR09014.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a]
gi|222034264|emb|CAP77005.1| tRNA-specific adenosine deaminase [Escherichia coli LF82]
gi|226901433|gb|EEH87692.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA]
gi|290763657|gb|ADD57618.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
CB9615]
gi|291433476|gb|EFF06455.1| tRNA-specific adenosine deaminase [Escherichia coli B185]
gi|294489520|gb|ADE88276.1| tRNA-specific adenosine deaminase [Escherichia coli IHE3034]
gi|300308910|gb|EFJ63430.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 200-1]
gi|300459125|gb|EFK22618.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 21-1]
gi|307625893|gb|ADN70197.1| tRNA-specific adenosine deaminase [Escherichia coli UM146]
gi|308927059|gb|EFP72533.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617]
gi|315288035|gb|EFU47437.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 110-3]
gi|315300515|gb|EFU59744.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 16-3]
gi|323188326|gb|EFZ73618.1| tRNA-specific adenosine deaminase [Escherichia coli RN587/1]
gi|323949213|gb|EGB45104.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli H252]
gi|324013577|gb|EGB82796.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 60-1]
gi|326345048|gb|EGD68792.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str.
1044]
gi|327252269|gb|EGE63941.1| tRNA-specific adenosine deaminase [Escherichia coli STEC_7v]
gi|330912330|gb|EGH40840.1| tRNA-specific adenosine-34 deaminase [Escherichia coli AA86]
gi|331043112|gb|EGI15252.1| tRNA-specific adenosine deaminase [Escherichia coli M605]
gi|331048843|gb|EGI20919.1| tRNA-specific adenosine deaminase [Escherichia coli M718]
gi|331054368|gb|EGI26395.1| tRNA-specific adenosine deaminase [Escherichia coli TA206]
Length = 178
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|170725917|ref|YP_001759943.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908]
gi|169811264|gb|ACA85848.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908]
Length = 169
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + D +M A+ + G V ++VK+ VI G ++ H
Sbjct: 1 MSQTERDIHYMKLAMDMAAKAEEKGEV----PVGAILVKNDEVISAGFNFCIGSHDPSAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+Q L +AG+ T YVTLEPC+
Sbjct: 57 AEMQCLRQAGKVIENYRLLDTTLYVTLEPCAMC 89
>gi|300214872|gb|ADJ79288.1| Cytosine/adenosine deaminase [Lactobacillus salivarius CECT 5713]
Length = 166
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
MP++ +FM AL ++ G + C+IVKDG +IGRG +
Sbjct: 1 MPLTDEQKVKFMKEALFEAKLAAKIGEV----PIGCVIVKDGKIIGRGHNLREHSQNATL 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A+EEA E +VTLEPC
Sbjct: 57 HAEMLAIEEANETVNSWRLVDTQLFVTLEPCPMCS 91
>gi|152992774|ref|YP_001358495.1| cytidine/deoxycytidylate deaminase family protein [Sulfurovum sp.
NBC37-1]
gi|151424635|dbj|BAF72138.1| cytidine/deoxycytidylate deaminase family protein [Sulfurovum sp.
NBC37-1]
Length = 153
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
FM A ++ + +IVKDG +I G HAE+ A+ A
Sbjct: 4 FMREAFLEAKRGI-EAGDGGPFGAVIVKDGKIIASGHNEVVKTNDPTAHAEMIAIRNASA 62
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G T YVT EPC
Sbjct: 63 KLQNFKLEGCTLYVTGEPCPMC 84
>gi|218706062|ref|YP_002413581.1| tRNA -specific adenosine deaminase [Escherichia coli UMN026]
gi|293406001|ref|ZP_06649993.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
gi|298381801|ref|ZP_06991400.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
gi|300898326|ref|ZP_07116674.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 198-1]
gi|218433159|emb|CAR14055.1| tRNA-specific adenosine deaminase [Escherichia coli UMN026]
gi|284922509|emb|CBG35596.1| tRNA-specific adenosine deaminase [Escherichia coli 042]
gi|291428209|gb|EFF01236.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412]
gi|298279243|gb|EFI20757.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302]
gi|300357988|gb|EFJ73858.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 198-1]
Length = 178
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|119897879|ref|YP_933092.1| cytidine deaminase [Azoarcus sp. BH72]
gi|119670292|emb|CAL94205.1| cytidine deaminase [Azoarcus sp. BH72]
Length = 154
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
D FM AAL + G P V ++V +G ++GRG G HAEV AL +
Sbjct: 3 DEMFMRAALEQAHLA-GACDEVP-VGAVVVCEGEIVGRGFNQPIGRHDPTAHAEVMALRD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 61 AAARLGNYRLPGCELYVTLEPCVMCSGAIM 90
>gi|319787039|ref|YP_004146514.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465551|gb|ADV27283.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 366
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 1 MPVSS----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGG 51
M V++ D R M AL + P V ++V G VIG G +
Sbjct: 204 MRVTAVDRAIDERHMCHALDLAERAEKEFDEIP-VGAVVVSAAGEVIGEGWNRNILDHDP 262
Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ A+ +AG GAT YVTLEPC+
Sbjct: 263 SAHAEIMAMRQAGQALSNHRLVGATLYVTLEPCAMC 298
>gi|296123852|ref|YP_003631630.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
DSM 3776]
gi|296016192|gb|ADG69431.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
DSM 3776]
Length = 166
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
R+M AL ++ + +IVKD +IG HAE+ A+ +
Sbjct: 16 HDRWMRQALDLAQQAFAE--EEVPIGAVIVKDDQIIGAAWNQREQLKDPTAHAEIVAITQ 73
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 74 AAEVIGDWRLEDCTLYVTLEPCPMC 98
>gi|322514212|ref|ZP_08067274.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
gi|322119905|gb|EFX91914.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976]
Length = 196
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
+S+ D FM AL + V +++ DG +IG G HAE+
Sbjct: 36 ISAQDIHFMQYALALADRA--EAIDEIPVGAVLIDSDGNIIGEGWNQVIQLADPSAHAEM 93
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +AG+ G T YVTLEPC+
Sbjct: 94 LAIRQAGKVQNNYRLLGCTLYVTLEPCTMC 123
>gi|251791894|ref|YP_003006614.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
NJ8700]
gi|247533281|gb|ACS96527.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus
NJ8700]
Length = 174
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQ 58
D +FM AL + +G V ++V +G +IG G HAE+
Sbjct: 8 LDEKFMRHALMLADKAEALGEI----PVGAVLVSAEGEIIGEGWNLSIIDSDPTAHAEIV 63
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
AL + G+ + AT YVTLEPC+
Sbjct: 64 ALRQGGQRLQNYRLLNATLYVTLEPCTMC 92
>gi|254411620|ref|ZP_05025396.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microcoleus chthonoplastes PCC 7420]
gi|196181342|gb|EDX76330.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microcoleus chthonoplastes PCC 7420]
Length = 233
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 6/168 (3%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
G +++ R P++I+ + + + ++ +
Sbjct: 62 AYGTTRSVSNSQLQQQRKQRGLPIQPVQIVCSRLAQFDPQLRFFHQNVPRWLLTTEAGAE 121
Query: 254 PVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
P + + I D + L G+ L V GG + S + + L+D +
Sbjct: 122 PWRDKSDYFERILVVNASSDGINWHDAYQQLNQLGIQRLAVLGGGNLVASLLAADLIDEL 181
Query: 312 ILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355
+++G P+P+E L K + + ++ L Y
Sbjct: 182 WFTVCPLILGGAAAPTPVEGTGFSEQLAKRLELLAVERVDQELFLHYR 229
>gi|153813521|ref|ZP_01966189.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
gi|149830392|gb|EDM85484.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174]
Length = 164
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE- 65
M A+R ++ L + C+IV DG +I RG HAE+ A+ +A +
Sbjct: 1 MKEAIRQAKKARAL--EEVPIGCVIVSDGKIIARGYNRRNTDKNTLSHAELNAIRKASKK 58
Query: 66 ----EARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 59 LGDWRLEGCTMYVTLEPCQMC 79
>gi|302390826|ref|YP_003826646.1| tRNA-adenosine deaminase [Acetohalobium arabaticum DSM 5501]
gi|302202903|gb|ADL11581.1| tRNA-adenosine deaminase [Acetohalobium arabaticum DSM 5501]
Length = 155
Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ S D +M AL ++ + ++VK VI R HAE+
Sbjct: 1 MDSDDEFYMKLALAEAQKAYDKAEV--PIGAVVVKGDEVIARSHNLREKLADPTAHAEIL 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA T YVT+EPC
Sbjct: 59 AIKEAANTLGDWRLYNCTIYVTVEPCVMC 87
>gi|224475714|ref|YP_002633320.1| putative deaminase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420321|emb|CAL27135.1| putative deaminase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 159
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D +M AL ++ G + ++VK+G VI R HAE
Sbjct: 2 ATDENYMKLALEEAKKAERIGEV----PIGAIVVKEGEVIARAHNLRETVQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E+A E T YVTLEPC + ++
Sbjct: 58 AIEKAAEAVGSWRLEDCTLYVTLEPCVMCSGAIVMSR 94
>gi|218701072|ref|YP_002408701.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
gi|218371058|emb|CAR18885.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39]
Length = 178
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|26248923|ref|NP_754963.1| tRNA-specific adenosine deaminase [Escherichia coli CFT073]
gi|227887593|ref|ZP_04005398.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
gi|300982262|ref|ZP_07175973.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 45-1]
gi|301047197|ref|ZP_07194289.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 185-1]
gi|312965474|ref|ZP_07779706.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
gi|26109329|gb|AAN81531.1|AE016764_213 Hypothetical protein yfhC [Escherichia coli CFT073]
gi|227835943|gb|EEJ46409.1| tRNA-specific adenosine deaminase [Escherichia coli 83972]
gi|300300874|gb|EFJ57259.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 185-1]
gi|300408816|gb|EFJ92354.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 45-1]
gi|307554578|gb|ADN47353.1| tRNA-specific adenosine deaminase [Escherichia coli ABU 83972]
gi|312289894|gb|EFR17782.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75]
gi|315292466|gb|EFU51818.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 153-1]
gi|324008467|gb|EGB77686.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Escherichia coli MS 57-2]
Length = 178
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 19 HEYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 76
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 77 GGLVMQNYRLIDATLYVTLEPCVMC 101
>gi|322613338|gb|EFY10280.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322633869|gb|EFY30608.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635475|gb|EFY32186.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322654860|gb|EFY51177.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661716|gb|EFY57934.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669697|gb|EFY65843.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673296|gb|EFY69401.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322674915|gb|EFY71002.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682938|gb|EFY78956.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685599|gb|EFY81594.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323191973|gb|EFZ77211.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323211560|gb|EFZ96398.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215992|gb|EGA00724.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323225619|gb|EGA09846.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229337|gb|EGA13461.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323235348|gb|EGA19432.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237466|gb|EGA21529.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323254025|gb|EGA37846.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323269662|gb|EGA53114.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 183
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|299067502|emb|CBJ38701.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CMR15]
Length = 183
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M V D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 13 MSVHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 71 MRALRQAAVRLGNYRLPECEVFVTLEPCVMC 101
>gi|212634313|ref|YP_002310838.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3]
gi|212555797|gb|ACJ28251.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
piezotolerans WP3]
Length = 186
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D+RFM A+ + G V ++VKDG V+ G G HAE+Q
Sbjct: 18 EDDSRFMKMAMEMAAKAEEKGEV----PVGAVLVKDGEVVSAGFNYSIGLHDPSAHAEMQ 73
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
+ +AG+ T YVTLEPC+
Sbjct: 74 CIRQAGQLLENYRLLDTTLYVTLEPCAMC 102
>gi|56412555|ref|YP_149630.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197361490|ref|YP_002141126.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56126812|gb|AAV76318.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197092966|emb|CAR58397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|320087069|emb|CBY96838.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 183
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|242372784|ref|ZP_04818358.1| deaminase [Staphylococcus epidermidis M23864:W1]
gi|242349557|gb|EES41158.1| deaminase [Staphylococcus epidermidis M23864:W1]
Length = 168
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A++ +R +G + +IVKD VI R T HAE A+
Sbjct: 4 DNDYMRLAIKEARKAQELGEV----PIGAVIVKDNHVIARAHNLRETLQQPTAHAEHIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A E T YVTLEPC + ++
Sbjct: 60 ERASEVIGSWRLEDCTLYVTLEPCVMCAGAIVMSR 94
>gi|312884996|ref|ZP_07744685.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367328|gb|EFP94891.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 156
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M A+ + G V L+VKDG +I G + HAE++ L +AG
Sbjct: 1 MRRAIELAHKAEQEGEV----PVGALLVKDGEIIAEGWNRSISTHDATAHAEIEVLRKAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 57 KILENYRLNDTTLYVTLEPCPMC 79
>gi|218283248|ref|ZP_03489309.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
gi|218216003|gb|EEC89541.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989]
Length = 158
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
++ D ++M A++ ++ + + C+IVKD +I RG HAE+
Sbjct: 1 MNMDDVKWMKEAIKQAKKA--ESYDEVPIGCVIVKDDKIIARGYNKRETLQQSIAHAEIM 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + YVTLEPC
Sbjct: 59 AIQKACKKLGTWRLEDCVLYVTLEPCPMC 87
>gi|124485759|ref|YP_001030375.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanocorpusculum labreanum Z]
gi|124363300|gb|ABN07108.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanocorpusculum labreanum Z]
Length = 225
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 14/224 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + A+S D + I+G +V LRA SDAI+VGIGTVL+DDP L
Sbjct: 1 MRPYVIINAAMSADGKLATRERKQTKISGHDDFLRVDRLRADSDAIMVGIGTVLSDDPSL 60
Query: 208 TCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ PMR+++D K+ D + K L VI V+E A
Sbjct: 61 RLKSEEHAGMRKANGKDPHPMRVVIDSTAKMPADGDMFKKGLGRVVIFVSEKAQKEKCDA 120
Query: 260 FRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
R+K I +++ L GV L+VEGG+ + SF++S L D I +Y +
Sbjct: 121 LREKATVISAGRDSVDLEIVLDELSKLGVEKLMVEGGSTLLWSFMSSGLFDEIRIYIGAL 180
Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
+IG P+ + + V L ++ K
Sbjct: 181 IIGGKDAPTFADGQGFTDPDDFTRLTLKDIERIDDGVLLTWVKK 224
>gi|210613778|ref|ZP_03289892.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
gi|210150987|gb|EEA81995.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787]
Length = 158
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ + D ++M A++ ++ +G + C+IV + +IGRG HAE
Sbjct: 1 MMNKDEKYMKEAIKQAKKAYALGEV----PIGCVIVYEDKIIGRGYNRRTIDKNTIAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ A+++A + T YVTLEPC
Sbjct: 57 MMAIKKASKKMDDWRLEDCTMYVTLEPCQMCS 88
>gi|261350765|ref|ZP_05976182.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Methanobrevibacter smithii DSM 2374]
gi|288860520|gb|EFC92818.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Methanobrevibacter smithii DSM 2374]
Length = 223
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 11/218 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ L A++ D I S K L R ++ + +
Sbjct: 1 MKPYVILNAAMTLDGKIATKTGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND------DPVLALAFR 261
+++ E +P+R+++D + + ++I + + D R
Sbjct: 61 VHKIDANPEDNPVRVVVDSKCRTPIAARITNKDAKTIIAGANDYKLDFIVSDRYANFTKR 120
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ DLK L+ L G+ +L++EGG+ + S I L+D I + + V+G
Sbjct: 121 GIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVVG 180
Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ + + G D+ L+Y
Sbjct: 181 GKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218
>gi|148642125|ref|YP_001272638.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methanobrevibacter smithii ATCC 35061]
gi|222444696|ref|ZP_03607211.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
DSM 2375]
gi|148551142|gb|ABQ86270.1| riboflavin-specific deaminase [Methanobrevibacter smithii ATCC
35061]
gi|222434261|gb|EEE41426.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii
DSM 2375]
Length = 223
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 11/218 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ L A++ D I S K L R ++ + +
Sbjct: 1 MKPYVILNAAMTLDGKIATKTGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND------DPVLALAFR 261
+++ E +P+R+++D + + ++I + + D R
Sbjct: 61 VHKIDANPEDNPVRVVVDSKCRTPIAARITNKDAKTIIAGANDYKLEFIVSDRYANFTKR 120
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ DLK L+ L G+ +L++EGG+ + S I L+D I + + V+G
Sbjct: 121 GIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVVG 180
Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ + + G D+ L+Y
Sbjct: 181 GKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218
>gi|124009723|ref|ZP_01694394.1| guanine deaminase [Microscilla marina ATCC 23134]
gi|123984327|gb|EAY24671.1| guanine deaminase [Microscilla marina ATCC 23134]
Length = 158
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ RF++ A+ + + S P ++VK+G +I G HAEV
Sbjct: 1 MHENHERFINRAIELATQGMDSNSGGP-FGAVVVKNGEIIAEGHNRVTSTQDPTAHAEVV 59
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA + + Y + EPC
Sbjct: 60 AIREACKVLNTFQLDDCVIYTSCEPCPMC 88
>gi|255530772|ref|YP_003091144.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
gi|255343756|gb|ACU03082.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
Length = 160
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M +FM A++ S +V T P +IVK+G VI + HAE
Sbjct: 1 MEKRDQHEKFMKMAIQLSEENVLDTVGGP-FGAVIVKNGKVIAKSANKVTSTNDPTAHAE 59
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V A+ A ++ + G T Y + EPC
Sbjct: 60 VSAIRMACKKLKTFDLSGCTVYTSCEPCPMC 90
>gi|309782085|ref|ZP_07676815.1| tRNA-specific adenosine deaminase [Ralstonia sp. 5_7_47FAA]
gi|308919151|gb|EFP64818.1| tRNA-specific adenosine deaminase [Ralstonia sp. 5_7_47FAA]
Length = 182
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +++ G V ++V+ ++G G A G HAE
Sbjct: 13 MSAHERDGYWMQQALVQAKFAWGQGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A E +VTLEPC
Sbjct: 71 MRALRQAAEKLGNYRLPDCEVFVTLEPCVMC 101
>gi|160894462|ref|ZP_02075238.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
gi|156863773|gb|EDO57204.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50]
Length = 214
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 2 PVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----P 53
+S D + +M A++ ++ + + C+IVKD VI RG
Sbjct: 50 EMSGEDRKMYEIYMKKAIKLAQKA--YVQGDVPIGCVIVKDNKVIARGYNKRNLKKTTLA 107
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+E+A + T YVTLEPC
Sbjct: 108 HAELLAIEQASKKLGDWRLEDCTMYVTLEPCQMC 141
>gi|21226928|ref|NP_632850.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
mazei Go1]
gi|20905237|gb|AAM30522.1| conserved protein [Methanosarcina mazei Go1]
Length = 228
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 13/224 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R I + A+S D + V I+G + ++ LRA +DAI+VGIGTVLADDP
Sbjct: 1 MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPS 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + + +P+R+++D + L++ I K +I V+ +
Sbjct: 61 LTVKSPERKAARKAAGKSENPVRVVVDSSARTPLNADIFKKGEGLRIIAVSNSAPEEKIR 120
Query: 259 AFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+K + DL +L L G+ SL+VEGGA + +++ LVD + +
Sbjct: 121 MLEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGATLNWGMLSAGLVDEVYTFVGN 180
Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGK 357
++IG P+ + +N + + L++ K
Sbjct: 181 LIIGGKTAPTFTDGEGFTENELLGLELSSAEKIEDGILLKWKVK 224
>gi|205353664|ref|YP_002227465.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857975|ref|YP_002244626.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205273445|emb|CAR38422.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206709778|emb|CAR34130.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326628768|gb|EGE35111.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 183
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|119179553|ref|XP_001241350.1| hypothetical protein CIMG_08513 [Coccidioides immitis RS]
Length = 230
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+ +FM AL+ + + G T V C++V DG VIGRG+ + G HAE
Sbjct: 48 NPAHEQFMREALQMAEQALAIGET----PVGCVLVHDGKVIGRGMNDTNRSLNGTRHAEF 103
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHY 82
A+EEA R YVT+EPC
Sbjct: 104 LAIEEALRSYPRSIFRTTDLYVTVEPCIMC 133
>gi|16761480|ref|NP_457097.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765888|ref|NP_461503.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29140823|ref|NP_804165.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62181133|ref|YP_217550.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582890|ref|YP_002636688.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|25303877|pir||AF0827 conserved hypothetical protein STY2814 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|303325222|pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
gi|16421115|gb|AAL21462.1| putative cytosine/adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16503780|emb|CAD02770.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136448|gb|AAO68014.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62128766|gb|AAX66469.1| putative Cytosine/adenosine deaminase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224467417|gb|ACN45247.1| hypothetical protein SPC_1081 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247763|emb|CBG25591.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994694|gb|ACY89579.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159116|emb|CBW18630.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|322715623|gb|EFZ07194.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130899|gb|ADX18329.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332989495|gb|AEF08478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 183
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|304405747|ref|ZP_07387405.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus
YK9]
gi|304344990|gb|EFM10826.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus
YK9]
Length = 148
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M+ A+ +R G + +IV++G VIGRG T + HAE+ A+ EA
Sbjct: 1 MAEAIEEARKAEAIGEV----PIGAVIVRNGEVIGRGYNLRETDHDATAHAEIIAIREAS 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ +T YVTLEPC
Sbjct: 57 KHIEAWRLLDSTLYVTLEPCPMC 79
>gi|297543592|ref|YP_003675894.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296841367|gb|ADH59883.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 148
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+FM AA+ + L V +IVKD +IGRG HAE+ A++EA
Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDATAHAEIMAIKEAC 61
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ + YVTLEPC
Sbjct: 62 KTLGSWRLDDCSMYVTLEPCPMC 84
>gi|283796876|ref|ZP_06346029.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
gi|291075284|gb|EFE12648.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1]
Length = 215
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D R+M A+R ++ +G + C+IV G +IGRG H
Sbjct: 37 MRKLTEDERYMREAVRQAKKAWALGEV----PIGCVIVHRGKIIGRGYNRRTTDGNVLAH 92
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +A T YVTLEPC
Sbjct: 93 AEILAIRKACRIIGDWRLEECTMYVTLEPCPMC 125
>gi|261820536|ref|YP_003258642.1| tRNA-specific adenosine deaminase [Pectobacterium wasabiae
WPP163]
gi|261604549|gb|ACX87035.1| CMP/dCMP deaminase zinc-binding protein [Pectobacterium wasabiae
WPP163]
Length = 168
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V D IG G G HAE+ AL
Sbjct: 7 DEYWMRYALALAQRAQDEGEV----PVGAVLVLDNKAIGEGWNRPIGHHDPTAHAEIMAL 62
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ G + T YVTLEPC
Sbjct: 63 RQGGAVLQNYRLLETTLYVTLEPCIMC 89
>gi|241662996|ref|YP_002981356.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12D]
gi|240865023|gb|ACS62684.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12D]
Length = 182
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +++ G V ++V+ ++G G A G HAE
Sbjct: 13 MSAHERDGYWMQQALVQAKFAWGQGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A E +VTLEPC
Sbjct: 71 MRALRQAAEKLGNYRLPDCEVFVTLEPCVMC 101
>gi|125597284|gb|EAZ37064.1| hypothetical protein OsJ_21407 [Oryza sativa Japonica Group]
Length = 1528
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ L V ++V++G +I RG HAE+ +
Sbjct: 1326 KTDELFMREALHEAQRAADLWEV--PVGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCI 1383
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA + + T YVTLEPC+
Sbjct: 1384 REASNKLKTWRLADTTLYVTLEPCAMC 1410
>gi|125555393|gb|EAZ00999.1| hypothetical protein OsI_23033 [Oryza sativa Indica Group]
Length = 1593
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ L V ++V++G +I RG HAE+ +
Sbjct: 1390 KTDELFMREALHEAQRAADLWEV--PVGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCI 1447
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA + + T YVTLEPC+
Sbjct: 1448 REASNKLKTWRLADTTLYVTLEPCAMC 1474
>gi|115468148|ref|NP_001057673.1| Os06g0489500 [Oryza sativa Japonica Group]
gi|51535686|dbj|BAD37705.1| putative cytosine deaminase [Oryza sativa Japonica Group]
gi|113595713|dbj|BAF19587.1| Os06g0489500 [Oryza sativa Japonica Group]
Length = 1590
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ L V ++V++G +I RG HAE+ +
Sbjct: 1388 KTDELFMREALHEAQRAADLWEV--PVGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCI 1445
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA + + T YVTLEPC+
Sbjct: 1446 REASNKLKTWRLADTTLYVTLEPCAMC 1472
>gi|313204491|ref|YP_004043148.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
gi|312443807|gb|ADQ80163.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
Length = 158
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
++ D FM AL ++ G P + +IV G +I RG T HAE+
Sbjct: 12 KETNPDEYFMRQALMEAQRA-GERDEVP-IGAVIVCQGRIIARGHNLTETLTDVTAHAEM 69
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
QA+ A G+ + YVT+EPC
Sbjct: 70 QAITAAAQFLGGKYLIDCSLYVTVEPCVMC 99
>gi|300691564|ref|YP_003752559.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum PSI07]
gi|299078624|emb|CBJ51281.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum PSI07]
Length = 169
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 1 MSAHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 59 MRALRQAAVRLGNYRLPECEVFVTLEPCVMC 89
>gi|260581733|ref|ZP_05849530.1| ComE operon protein 2 [Haemophilus influenzae NT127]
gi|319897607|ref|YP_004135804.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3031]
gi|260095326|gb|EEW79217.1| ComE operon protein 2 [Haemophilus influenzae NT127]
gi|317433113|emb|CBY81487.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3031]
Length = 173
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|145632283|ref|ZP_01788018.1| hypothetical protein CGSHi3655_07509 [Haemophilus influenzae
3655]
gi|145634073|ref|ZP_01789784.1| hypothetical protein CGSHiAA_08515 [Haemophilus influenzae
PittAA]
gi|229844039|ref|ZP_04464180.1| hypothetical protein CGSHi6P18H1_06366 [Haemophilus influenzae
6P18H1]
gi|144987190|gb|EDJ93720.1| hypothetical protein CGSHi3655_07509 [Haemophilus influenzae
3655]
gi|145268517|gb|EDK08510.1| hypothetical protein CGSHiAA_08515 [Haemophilus influenzae
PittAA]
gi|229813033|gb|EEP48721.1| hypothetical protein CGSHi6P18H1_06366 [Haemophilus influenzae
6P18H1]
Length = 173
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|16272843|ref|NP_439066.1| hypothetical protein HI0906 [Haemophilus influenzae Rd KW20]
gi|260579996|ref|ZP_05847826.1| ComE operon protein 2 [Haemophilus influenzae RdAW]
gi|1175980|sp|P44931|TADA_HAEIN RecName: Full=tRNA-specific adenosine deaminase
gi|1573925|gb|AAC22565.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260093280|gb|EEW77213.1| ComE operon protein 2 [Haemophilus influenzae RdAW]
Length = 173
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|68249492|ref|YP_248604.1| hypothetical protein NTHI1073 [Haemophilus influenzae 86-028NP]
gi|145636963|ref|ZP_01792627.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittHH]
gi|145638273|ref|ZP_01793883.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittII]
gi|68057691|gb|AAX87944.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
gi|145269821|gb|EDK09760.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittHH]
gi|145272602|gb|EDK12509.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittII]
gi|309751427|gb|ADO81411.1| tRNA-specific adenosine deaminase [Haemophilus influenzae R2866]
gi|309973597|gb|ADO96798.1| tRNA-specific adenosine deaminase [Haemophilus influenzae R2846]
Length = 173
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|261492526|ref|ZP_05989079.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496801|ref|ZP_05993175.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307548|gb|EEY08877.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311685|gb|EEY12835.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 174
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHA 55
+S D FM AL + G V ++V K+ +IGRG HA
Sbjct: 14 ISEQDIAFMQYALDLADLAEAKGEI----PVGAVLVDKNQQIIGRGWNQTIQLCDPSAHA 69
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+QA+ +AG+ T YVTLEPC
Sbjct: 70 EMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMC 101
>gi|82702354|ref|YP_411920.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosospira multiformis ATCC 25196]
gi|82410419|gb|ABB74528.1| tRNA-adenosine deaminase [Nitrosospira multiformis ATCC 25196]
Length = 163
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
++S DA FM AL S G V ++V++G ++GRG HAE
Sbjct: 1 MNSSDAGFMHVALELSAQAEQAGEV----PVGAIVVRNGTIVGRGYNCPISTSDPTAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V AL +AG T YVTLEPC+
Sbjct: 57 VMALRDAGRHLGNYRLGDCTLYVTLEPCAMC 87
>gi|297616226|ref|YP_003701385.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297144063|gb|ADI00820.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 155
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRF--SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D FM A+ + +H G V ++VK+G +I H
Sbjct: 1 MTLFLHDEDFMRRAVELGWAAFHQGEV----PVGAVVVKNGEIISSAHNEKEKRQDATAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A++ A + + T Y T+EPC
Sbjct: 57 AEMLAIQRASQALGTWRLQDTTLYSTIEPCPMC 89
>gi|20092219|ref|NP_618294.1| cytidine/deoxycytidylate deaminase family protein [Methanosarcina
acetivorans C2A]
gi|19917452|gb|AAM06774.1| cytidine/deoxycytidylate deaminase family protein [Methanosarcina
acetivorans C2A]
Length = 162
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 2 PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
+S D FM A+ S + G +I K+G +I
Sbjct: 5 NMSEKDTLFMRRAIELSLESVKKGGG------PFGAVITKNGKIISESCNQVTVLNDPTA 58
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE+ A+ EA + +G Y + EPC
Sbjct: 59 HAEISAIREAARKLNAPDLKGCEIYASCEPCPMC 92
>gi|89100955|ref|ZP_01173801.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus sp. NRRL B-14911]
gi|89084326|gb|EAR63481.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus sp. NRRL B-14911]
Length = 180
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M ++ D +M A+ ++ +G + ++V DG +I R H
Sbjct: 6 MNITYNDDDYMKEAIEEAKKAGELGEV----PIGAVVVLDGKIISRAHNLRESNQNAVAH 61
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
AE+ A+EEA A YVTLEPC+
Sbjct: 62 AELLAIEEACGMLGTWRLEDAALYVTLEPCAMCS 95
>gi|291526516|emb|CBK92103.1| Cytosine/adenosine deaminases [Eubacterium rectale DSM 17629]
gi|291527005|emb|CBK92591.1| Cytosine/adenosine deaminases [Eubacterium rectale M104/1]
Length = 157
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ D ++M A++ ++ L + C+IV +I RG T HAE+ A+
Sbjct: 2 TQDEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + T YVTLEPC
Sbjct: 60 RKASKKTGDWRLEECTMYVTLEPCQMC 86
>gi|290978118|ref|XP_002671783.1| predicted protein [Naegleria gruberi]
gi|284085355|gb|EFC39039.1| predicted protein [Naegleria gruberi]
Length = 214
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 26/157 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+ D +M AL ++ + V C+IV D ++GRG HAE+
Sbjct: 13 KFTEQDEIYMREALNMAQKALEELEV--PVGCVIVHDNKIVGRGYNKTNQKKNATRHAEL 70
Query: 58 QALEEAGEE-----------ARGATAYVTLEPCSHY---------GRSPPCAQFIIECGI 97
+A +E E + T YVT+EPC GR G
Sbjct: 71 EAFDEITENYSEELNNNVNFFKECTLYVTVEPCVMCASALILLKIGRVVCGCMNERFGGC 130
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
V+ ++ ++ E
Sbjct: 131 GSVLNIHQSCYNSLNHNHHHDQHGNNNQLNWKYECVH 167
>gi|288560264|ref|YP_003423750.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
[Methanobrevibacter ruminantium M1]
gi|288542974|gb|ADC46858.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD
[Methanobrevibacter ruminantium M1]
Length = 226
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 79/222 (35%), Gaps = 15/222 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ L A++ D I S + + + ++ + D
Sbjct: 1 MKPYVILNAAMTLDGKIATKTGSSEISGKEDLERVHEIRKKVDGIMVGIGTVLADDPRLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI----------IVTENDDPVLA 257
++N +E +P+RI++D + L+ +I+ + E
Sbjct: 61 VHKINARKEDNPIRIVVDNKARTPLNFRILNDDAETIIAVSSICDERNENCDEEAVKRAK 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
++ N+ + DL + + L G+ S+++EGG+ + S I L+D + + +
Sbjct: 121 ELEKRVNVFYSTGETVDLVEFMEYLYDYGIKSIMLEGGSTLNFSMIRDGLIDEVKICIAP 180
Query: 318 IVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354
+++G + + + G D +EY
Sbjct: 181 MIVGGKDSKTFFDGDGFDYMKDAVQLELINSFPLGKDFIMEY 222
>gi|75676735|ref|YP_319156.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrobacter winogradskyi Nb-255]
gi|74421605|gb|ABA05804.1| tRNA-adenosine deaminase [Nitrobacter winogradskyi Nb-255]
Length = 148
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
FM AL + G P + C+IV+DG +I R +T HAEV AL A
Sbjct: 6 FMDMALEAAEKA-GQAGEVP-IGCVIVRDGEIIAAAGNRTLTDRDPTAHAEVLALRAAAH 63
Query: 64 ---GEEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 64 VLGSERLTGCDLYVTLEPCTMC 85
>gi|289577296|ref|YP_003475923.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
italicus Ab9]
gi|289527009|gb|ADD01361.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
italicus Ab9]
Length = 148
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
+FM AA+ + L V +IVKD +IGRG HAE+ A++EA
Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDVTAHAEIMAIKEAC 61
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ + YVTLEPC
Sbjct: 62 KTLGSWRLDDCSIYVTLEPCPMC 84
>gi|187928419|ref|YP_001898906.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12J]
gi|187725309|gb|ACD26474.1| CMP/dCMP deaminase zinc-binding [Ralstonia pickettii 12J]
Length = 182
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +++ G V ++V+ ++G G A G HAE
Sbjct: 13 MSAHERDGYWMQQALVQAKFAWGQGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A E +VTLEPC
Sbjct: 71 MRALRQAAEKLGNYRLPDCEVFVTLEPCVMC 101
>gi|315125849|ref|YP_004067852.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
gi|315014363|gb|ADT67701.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913]
Length = 168
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D +M AL +++ L V +IVKD +I G T HAE
Sbjct: 1 MTEPFDDQYWMEQALVYAKQAEQLDEI--PVGAIIVKDNQLISAGYNRSITDNDPSAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ EAG+ T YVTLEPCS
Sbjct: 59 MIAVREAGKVLNNYRLIDCTLYVTLEPCSMC 89
>gi|322380244|ref|ZP_08054465.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
gi|321147322|gb|EFX42001.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5]
Length = 353
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 70/376 (18%), Positives = 133/376 (35%), Gaps = 75/376 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
M A ++ + L NPSVAC+I+ ++ + PHAEV+AL++A +
Sbjct: 16 MRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRALKDAYNKLSP 75
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ T VTLEPC+H+G++PPCA + + ++V
Sbjct: 76 TPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAALLAQIKPKKV 135
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
++ + + G GL L + GI V + + L +K KIA+
Sbjct: 136 IISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGVFNLFKIALRL 194
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ I+ +S+ H R+ ++ +++ +V
Sbjct: 195 NG------SFEGKISEELSQIFTHTQRSIANYLIISGQSV-------------------- 228
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ +LDS++ P + + D + + L
Sbjct: 229 -----RSDRPTLDSRLSAYTKRPPNVAILTRDTTPFDPTIPLFQVEKRQVQICHQVEELP 283
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFM 339
+ G + +EGG + S VD ++++++ + G PL K+F
Sbjct: 284 LQQGFNI----IEGGWDLFVSLQKH--VDMLLIHQNSTLAGSLKSTKMPL------KSFT 331
Query: 340 CVRRDYFGSDVCLEYI 355
G D+ +I
Sbjct: 332 FCHSQLLGPDLLEWFI 347
>gi|330467994|ref|YP_004405737.1| deaminase-reductase domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328810965|gb|AEB45137.1| deaminase-reductase domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 235
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 12/225 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R ++ L A S D I A + ++ ++V +RA DAILVG GTV DDP L
Sbjct: 8 RRPYVLLSCATSIDGYIDDATDERLMLSNDADLDRVDEVRASCDAILVGAGTVRRDDPRL 67
Query: 208 TCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
R + + P+R+ + L ++ ++
Sbjct: 68 LVRCDRRRADRIARGLPESPIRVTVTGCGDLDPTARFFTVGDTERIVYCASAACEKTRHR 127
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
++ + D DL + LT L RGV LLVEGGA V F+ + L D + L +
Sbjct: 128 VGERATVVDAGDPIDLARALTDLADRGVRRLLVEGGALVHGQFLTAGLADELHLVVAPFF 187
Query: 320 IGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
+G+ P + +G + V G V Y C
Sbjct: 188 VGDRRAPRFVGDGRFPWHSARRAQVVEARQIGDVVLTRYALSERC 232
>gi|294674240|ref|YP_003574856.1| guanine deaminase [Prevotella ruminicola 23]
gi|294472550|gb|ADE81939.1| guanine deaminase [Prevotella ruminicola 23]
Length = 158
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 3 VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
++ D +FM A+R + G +IVKDG +I + H
Sbjct: 2 ITEQDKKFMREAIRLANESVERGGG------PFGAVIVKDGEIIAGSSNSVTIDNDPTAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AEV + +A + R G T Y + EPC
Sbjct: 56 AEVNTIRKACFKLRTFDLSGCTIYTSCEPCPMC 88
>gi|168757783|ref|ZP_02782790.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4401]
gi|168768660|ref|ZP_02793667.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4486]
gi|188024727|ref|ZP_02773396.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4113]
gi|189403941|ref|ZP_02786184.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4501]
gi|195936706|ref|ZP_03082088.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4024]
gi|208806459|ref|ZP_03248796.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4206]
gi|208812941|ref|ZP_03254270.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4045]
gi|208820370|ref|ZP_03260690.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4042]
gi|209400171|ref|YP_002272033.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4115]
gi|215487903|ref|YP_002330334.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
E2348/69]
gi|217327122|ref|ZP_03443205.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
TW14588]
gi|254794508|ref|YP_003079345.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
TW14359]
gi|261223005|ref|ZP_05937286.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259444|ref|ZP_05951977.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
FRIK966]
gi|306814377|ref|ZP_07448539.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
gi|150421686|sp|Q8XA44|TADA_ECO57 RecName: Full=tRNA-specific adenosine deaminase
gi|150421687|sp|Q8FF24|TADA_ECOL6 RecName: Full=tRNA-specific adenosine deaminase
gi|188017152|gb|EDU55274.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4113]
gi|189355294|gb|EDU73713.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4401]
gi|189362211|gb|EDU80630.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4486]
gi|189368357|gb|EDU86773.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4501]
gi|208726260|gb|EDZ75861.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4206]
gi|208734218|gb|EDZ82905.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4045]
gi|208740493|gb|EDZ88175.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4042]
gi|209161571|gb|ACI39004.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
EC4115]
gi|215265975|emb|CAS10384.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str.
E2348/69]
gi|217319489|gb|EEC27914.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
TW14588]
gi|254593908|gb|ACT73269.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
TW14359]
gi|305851771|gb|EFM52223.1| tRNA-specific adenosine deaminase [Escherichia coli NC101]
gi|312947130|gb|ADR27957.1| tRNA-specific adenosine deaminase [Escherichia coli O83:H1 str.
NRG 857C]
gi|320180559|gb|EFW55490.1| tRNA-specific adenosine-34 deaminase [Shigella boydii ATCC 9905]
gi|320188900|gb|EFW63559.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7
str. EC1212]
gi|320640908|gb|EFX10396.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
G5101]
gi|320646350|gb|EFX15277.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str.
493-89]
gi|320651530|gb|EFX19917.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str.
H 2687]
gi|320657241|gb|EFX25050.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662847|gb|EFX30179.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667651|gb|EFX34566.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str.
LSU-61]
gi|323955795|gb|EGB51553.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli H263]
gi|323968007|gb|EGB63419.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Escherichia coli M863]
gi|326340365|gb|EGD64169.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7
str. 1125]
gi|332088011|gb|EGI93136.1| tRNA-specific adenosine deaminase [Shigella boydii 5216-82]
gi|332089781|gb|EGI94882.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 155-74]
Length = 167
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 8 HEYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 65
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 66 GGLVMQNYRLIDATLYVTLEPCVMC 90
>gi|154505232|ref|ZP_02041970.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
gi|153794430|gb|EDN76850.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149]
Length = 179
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ D ++M A+R ++ L + C+IV +IGRG HAE+QA+
Sbjct: 21 NQDEKYMREAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTVDKNTLAHAELQAI 78
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+A + T YVTLEPC
Sbjct: 79 RKASKKMDDWRLEDCTMYVTLEPCQMCS 106
>gi|289551636|ref|YP_003472540.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
HKU09-01]
gi|289181167|gb|ADC88412.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis
HKU09-01]
Length = 158
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A+ +R G + +IVKD VI R T+ HAE A+
Sbjct: 4 DEYYMKIAIAEARKAEAIGEV----PIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A E T YVTLEPC + ++
Sbjct: 60 ERASEVLGSWRLEACTLYVTLEPCVMCAGAIVMSR 94
>gi|303320905|ref|XP_003070447.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110143|gb|EER28302.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033053|gb|EFW15002.1| tRNA-specific adenosine deaminase subunit TAD2 [Coccidioides
posadasii str. Silveira]
Length = 207
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYG 50
M +S D +FM AL+ + + G T V C++V DG VIGRG+ +
Sbjct: 18 MADTSADDPAHEQFMREALQMAEQALAIGET----PVGCVLVHDGKVIGRGMNDTNRSLN 73
Query: 51 GCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
G HAE A+EEA R YVT+EPC
Sbjct: 74 GTRHAEFLAIEEALRSYPRSIFRTTDLYVTVEPCIMC 110
>gi|15606234|ref|NP_213612.1| hypothetical protein aq_903 [Aquifex aeolicus VF5]
gi|6226405|sp|O67050|TADA_AQUAE RecName: Full=tRNA-specific adenosine deaminase
gi|2983443|gb|AAC07025.1| hypothetical protein aq_903 [Aquifex aeolicus VF5]
Length = 151
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
F+ ALR ++ G V +IVK+G +I + + HAE+ A++
Sbjct: 4 EYFLKVALREAKRAFEKGEV----PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIK 59
Query: 62 EAGEE-----ARGATAYVTLEPCSHYGR 84
EA G YVTLEPC
Sbjct: 60 EACRRLNTKYLEGCELYVTLEPCIMCSY 87
>gi|148828084|ref|YP_001292837.1| hypothetical protein CGSHiGG_08090 [Haemophilus influenzae
PittGG]
gi|148719326|gb|ABR00454.1| hypothetical protein CGSHiGG_08090 [Haemophilus influenzae
PittGG]
Length = 125
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|322378922|ref|ZP_08053338.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
HS1]
gi|321148664|gb|EFX43148.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis
HS1]
Length = 353
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 70/376 (18%), Positives = 133/376 (35%), Gaps = 75/376 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
M A ++ + L NPSVAC+I+ ++ + PHAEV+AL++A +
Sbjct: 16 MRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRALKDAYNKLSP 75
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ T VTLEPC+H+G++PPCA + + ++V
Sbjct: 76 TPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAALLAQIKPKKV 135
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
++ + + G GL L + GI V + + L +K KIA+
Sbjct: 136 IISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGVFNLFKIALRL 194
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ I+ +S+ H R+ ++ +++ +V
Sbjct: 195 NG------SFEGKISEELSQIFTHTQRSIANYLIISGQSV-------------------- 228
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ +LDS++ P + + D + + L
Sbjct: 229 -----RSDRPTLDSRLSAYTKRPPNVAILTRDTTPFDPTVPLFQVEKRQVQICHQVEELP 283
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFM 339
+ G + +EGG + S VD ++++++ + G PL K+F
Sbjct: 284 LQQGFNI----IEGGWDLFVSLQKH--VDMLLIHQNSTLAGSLKSTKMPL------KSFT 331
Query: 340 CVRRDYFGSDVCLEYI 355
G D+ +I
Sbjct: 332 FCHSQLLGPDLLEWFI 347
>gi|315659096|ref|ZP_07911961.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
gi|315495820|gb|EFU84150.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590]
Length = 158
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A+ +R G + +IVKD VI R T+ HAE A+
Sbjct: 4 DEYYMKIAIAEARKAEAIGEV----PIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A E T YVTLEPC + ++
Sbjct: 60 ERASEVLGSWRLEACTLYVTLEPCVMCAGAIVMSR 94
>gi|285018425|ref|YP_003376136.1| cytidine / deoxycytidylate deaminase [Xanthomonas albilineans GPE
PC73]
gi|283473643|emb|CBA16146.1| putative cytidine / deoxycytidylate deaminase protein
[Xanthomonas albilineans]
Length = 165
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQA 59
+ D R+M AL + P V ++V + V+G G + HAE+ A
Sbjct: 9 ARDERWMRHALALAERAEREFDEIP-VGAVLVSAEDAVLGEGWNLNIAEHDPSAHAEIVA 67
Query: 60 LEEAG-----EEARGATAYVTLEPCSHY 82
L +AG G+T YVTLEPC+
Sbjct: 68 LRQAGRRLGNHRLPGSTLYVTLEPCAMC 95
>gi|227112728|ref|ZP_03826384.1| tRNA-specific adenosine deaminase [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 168
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
D +M AL ++ G V ++V D IG G G HAE+ AL
Sbjct: 7 DEYWMRHALMLAQRAQDEGEV----PVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMAL 62
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ G+ + T YVTLEPC
Sbjct: 63 RQGGQVLQNYRLLETTLYVTLEPCIMC 89
>gi|33152629|ref|NP_873982.1| hypothetical protein HD1591 [Haemophilus ducreyi 35000HP]
gi|33148853|gb|AAP96371.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 183
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQ 58
S+ D + M AL ++ T V ++V G +IG G HAE+
Sbjct: 24 SAQDIQLMQYALTLAKRA--ETMGEIPVGAVLVDSKGNIIGEGWNQVIALSDPSAHAEIL 81
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC+
Sbjct: 82 AIRQASHRLQNYRLLDCTLYVTLEPCTMC 110
>gi|253996102|ref|YP_003048166.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
gi|253982781|gb|ACT47639.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8]
Length = 165
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
+ D FM+ AL ++ G V ++VKDG++IGRG T + HAE+
Sbjct: 9 TEQDQAFMNIALTLAKQAALAGEV----PVGAIVVKDGVIIGRGSNAPITLHDPSAHAEI 64
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
QA+ +A + T YVTLEPC+
Sbjct: 65 QAMRDAAQHLGNYRLVDCTLYVTLEPCAMC 94
>gi|295089886|emb|CBK75993.1| Cytosine/adenosine deaminases [Clostridium cf. saccharolyticum K10]
Length = 214
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D R+M A+R ++ +G + C+IV G +IGRG H
Sbjct: 36 MRKLTEDERYMREAVRQAKKAWALGEV----PIGCVIVHRGKIIGRGYNRRTTDGNVLAH 91
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ +A T YVTLEPC
Sbjct: 92 AEILAIRKACRIIGDWRLEECTMYVTLEPCPMC 124
>gi|114320177|ref|YP_741860.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226571|gb|ABI56370.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1]
Length = 164
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
D R+M AL + G V ++V D + G HAEV
Sbjct: 13 PEDIRWMRRALALADQAEAAGEV----PVGAVLVLDDREVAVGSNQPITARDPTAHAEVV 68
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL AGE G T YVTLEPC+
Sbjct: 69 ALRRAGEVLGAYRLSGTTLYVTLEPCTMC 97
>gi|90416322|ref|ZP_01224254.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
proteobacterium HTCC2207]
gi|90332047|gb|EAS47261.1| cytidine/deoxycytidylate deaminase family protein [marine gamma
proteobacterium HTCC2207]
Length = 160
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D FM A+ + G V L+VK+G VIG G HAE+
Sbjct: 2 SLDEEFMGRAMELAHQAAAVGEV----PVGALVVKEGRVIGEGYNQPITSCDPTGHAEII 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G YVT+EPC+
Sbjct: 58 AMRNAAQTLGNYRLSGCDLYVTIEPCTMC 86
>gi|169830233|ref|YP_001716215.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C]
gi|169637077|gb|ACA58583.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis
audaxviator MP104C]
Length = 156
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ A +M ALR + G V ++V+DG +IGRG HAE+
Sbjct: 8 AVHAGYMREALREAEKAYAKGEV----PVGAVVVQDGTIIGRGHNLREADNDASAHAELL 63
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + GAT YVT+EPC
Sbjct: 64 AMRQAAQVSGDWRLSGATVYVTMEPCPMC 92
>gi|30248454|ref|NP_840524.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Nitrosomonas europaea ATCC 19718]
gi|30138340|emb|CAD84348.1| Cytidine and deoxycytidylate deaminase zinc-binding region
[Nitrosomonas europaea ATCC 19718]
Length = 167
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
PV + D FM AL +R G P V ++V++ ++G G T HAE+
Sbjct: 9 PVQTEDEYFMRQALDLARVA-GAAGEVP-VGAVMVRESRIVGCGHNCPVTTVDPTAHAEI 66
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
+AL +A G T YVTLEPC
Sbjct: 67 RALRDAASRVGNYRLPGCTLYVTLEPCVMC 96
>gi|303234521|ref|ZP_07321158.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna BVS033A4]
gi|302494355|gb|EFL54124.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna BVS033A4]
Length = 155
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ + D +FM A+ +R L V C+IVK+G +I + T HAE++
Sbjct: 1 MENNDEKFMIKAIEQARIAFDLDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 59 AINQATQVIGNFRLDNCTMYVTLEPCVMC 87
>gi|325264602|ref|ZP_08131332.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
sp. D5]
gi|324030264|gb|EGB91549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
sp. D5]
Length = 159
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ D ++M A+R ++ L + C+IV +IGRG HAE+ A+
Sbjct: 2 NADEKYMKEAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTIDKNPLAHAELTAI 59
Query: 61 EEAGEEARG-----ATAYVTLEPCSHYG 83
A ++ T YVTLEPC
Sbjct: 60 RRASKKLNDWRLEECTLYVTLEPCQMCS 87
>gi|170751176|ref|YP_001757436.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
gi|170657698|gb|ACB26753.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
Length = 160
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+S +FM+ A+ S + S C+IV+DG +I G H E++
Sbjct: 1 MSDNHEKFMARAIALSEKTSLVDSAGGVFGCVIVQDGEIIAEGANRVVAENDPTWHGEIE 60
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + + R AT Y + EPC
Sbjct: 61 AIRKACKAQGSFKLRNATLYTSAEPCPMC 89
>gi|325577729|ref|ZP_08148004.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae
ATCC 33392]
gi|325160474|gb|EGC72600.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae
ATCC 33392]
Length = 172
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRW--HVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
S D +FM AL + +G V ++V +G ++G G HAE
Sbjct: 3 SDLDEKFMQHALMLADRAEALGEI----PVGAVLVGDEGNILGEGWNLSIIENDPTAHAE 58
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL A + + T YVTLEPC+
Sbjct: 59 IVALRNAAQNIQNYRLLNTTLYVTLEPCTMC 89
>gi|188584656|ref|YP_001916201.1| tRNA-adenosine deaminase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349343|gb|ACB83613.1| tRNA-adenosine deaminase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 158
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
MP ++ D +M A+ ++ G + +IVKD +I G T+
Sbjct: 1 MPSHNNTDKYWMQQAIDQAKLAYNKGEV----PIGAVIVKDEQLIATGFNKRETSQDATS 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ A++ A G T YVT+EPC
Sbjct: 57 HAEIIAIQSACNYLGGWRLLDCTLYVTIEPCPMC 90
>gi|281179608|dbj|BAI55938.1| putative deaminase [Escherichia coli SE15]
Length = 178
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
+M A+ ++ V ++V + VIG G G HAE+ AL +
Sbjct: 20 EYWMRHAMTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77
Query: 64 G-----EEARGATAYVTLEPCSHY 82
G AT YVTLEPC
Sbjct: 78 GLVMQNYRLIDATLYVTLEPCVMC 101
>gi|145595083|ref|YP_001159380.1| deaminase-reductase domain-containing protein [Salinispora tropica
CNB-440]
gi|145304420|gb|ABP55002.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 229
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 12/227 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R ++ L A S D I A + ++ +++ +RA DAILVG GTV DDP
Sbjct: 1 MTERPYVLLSCATSLDGYIDDATGQRLLLSNDADLDRIDEVRAGCDAILVGAGTVRRDDP 60
Query: 206 ELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L R + P R+ + L +++ T A +I + +
Sbjct: 61 RLLVRSAARRAERVARGLAASPTRVTVTGCGDLDPGARVFTTGATARLIYCATSGVEKVR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + DL +L L RG+ LLVEGGA++ F+ S L D + L +
Sbjct: 121 ERLGDIATVVHSGEPVDLAAVLADLAARGIGRLLVEGGASMHTQFLASGLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
+G+G P + +G V G + Y + C
Sbjct: 181 FFVGDGRAPRFVRDGSFPWHAGHRAQIVEVRQIGDVALVRYALSDRC 227
>gi|322620458|gb|EFY17323.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625074|gb|EFY21903.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629482|gb|EFY26258.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322639849|gb|EFY36528.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644265|gb|EFY40809.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649957|gb|EFY46377.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322658212|gb|EFY54478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|323200394|gb|EFZ85475.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201294|gb|EFZ86361.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208364|gb|EFZ93304.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323221772|gb|EGA06180.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323245221|gb|EGA29222.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248795|gb|EGA32722.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323259073|gb|EGA42721.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261995|gb|EGA45560.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267779|gb|EGA51260.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
Length = 172
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|320169275|gb|EFW46174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1344
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEA 63
S D R+M+ A++ + V T V C+IV++G+V+ G + G HAE AL++
Sbjct: 1190 SNDWRYMAMAIQQANQSVP-VETAYCVGCVIVQNGVVLSSGFSRELPGNTHAEECALKKL 1248
Query: 64 -GEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
E+A+GAT Y T+EPC+ + C II I RVV+ V +P V G+ L +
Sbjct: 1249 TPEQAQGATVYTTMEPCTTRLSGNVCCTDHIINNRIARVVIGVREPAEFVVCIGIDRLEK 1308
Query: 122 KGIIV 126
GI V
Sbjct: 1309 AGIQV 1313
>gi|28897437|ref|NP_797042.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28805649|dbj|BAC58926.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 161
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M AL + G V ++VKDG VI G + HAE+Q L AG
Sbjct: 1 MRRALALAEQAELEGEV----PVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRNAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 57 AVLENYRLLDTTLYVTLEPCPMC 79
>gi|331701735|ref|YP_004398694.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
NRRL B-30929]
gi|329129078|gb|AEB73631.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri
NRRL B-30929]
Length = 165
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D+RFM AAL + +G + ++V DG ++GRG G HAE+ A+
Sbjct: 5 DSRFMKAALIEANKAYLIGEV----PIGAVVVHDGTIVGRGHNLREHLNDGTAHAEILAI 60
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA R YVT+EPC
Sbjct: 61 QEACRTLRSWRLIDCDLYVTIEPCLMC 87
>gi|255320509|ref|ZP_05361690.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
SK82]
gi|262378401|ref|ZP_06071558.1| conserved hypothetical protein [Acinetobacter radioresistens
SH164]
gi|255302481|gb|EET81717.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens
SK82]
gi|262299686|gb|EEY87598.1| conserved hypothetical protein [Acinetobacter radioresistens
SH164]
Length = 163
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
D +M A + G V +IV + VIG G HAE+QA
Sbjct: 7 DDHYWMQLAYEQAALAASKGEV----PVGAVIVSNNQVIGVGHNQPIFKHDPTAHAEIQA 62
Query: 60 LEEAGEEARG------ATAYVTLEPCSHY 82
L EA + + T YVTLEPC+
Sbjct: 63 LREACQLTQNYRLPDDTTLYVTLEPCTMC 91
>gi|148826450|ref|YP_001291203.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittEE]
gi|148716610|gb|ABQ98820.1| preprotein translocase subunit SecA [Haemophilus influenzae
PittEE]
Length = 161
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V D +IG G HA
Sbjct: 7 RSEFDEKMMRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL + + +T YVTLEPC+
Sbjct: 63 EIIALRNGAKNIQNYRLLNSTLYVTLEPCTMC 94
>gi|218258211|ref|ZP_03474613.1| hypothetical protein PRABACTJOHN_00267 [Parabacteroides johnsonii
DSM 18315]
gi|218225660|gb|EEC98310.1| hypothetical protein PRABACTJOHN_00267 [Parabacteroides johnsonii
DSM 18315]
Length = 147
Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D FM AL +R G V +IV + +I R H
Sbjct: 1 MIDPFNDEYFMKQALIEARAAAKEGEV----PVGAVIVCNNRIIARAHNQTERLNDPTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+ A + G + YVT+EPC
Sbjct: 57 AEMLAITAAVGVLGAKYLTGCSLYVTVEPCVMC 89
>gi|118444046|ref|YP_879269.1| cytidine/deoxycytidylate deaminase family protein, pytative
[Clostridium novyi NT]
gi|118134502|gb|ABK61546.1| cytidine/deoxycytidylate deaminase family protein, pytative
[Clostridium novyi NT]
Length = 147
Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D +FM AL ++ V +IVK+G VI HAE+ A++
Sbjct: 1 MDKKFMEIALDEAKIAALKDEV--PVGAVIVKNGEVIASAHNLRETLNDPTAHAEILAIK 58
Query: 62 EAGEEARG-----ATAYVTLEPCSHYG 83
+A + YVTLEPC
Sbjct: 59 KASSILKNWRLNECEMYVTLEPCPMCS 85
>gi|282600107|ref|ZP_05973017.2| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
4541]
gi|282566416|gb|EFB71951.1| tRNA-specific adenosine deaminase [Providencia rustigianii DSM
4541]
Length = 176
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
D +M+ A+ ++ G V L+VKD +I G + HAE+
Sbjct: 14 EIDEYWMAQAIELAKQAQDIGEI----PVGALLVKDNQLIATGWNHSIEQHDPTAHAEII 69
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
L++AG+ + T YVTLEPC CA +I I RVV D G
Sbjct: 70 TLQQAGKILKNYRLLDTTLYVTLEPCI------MCAGAMIHSRIGRVVYGAKDFKTGACG 123
Query: 114 RGLQWLSQKG 123
+ + Q G
Sbjct: 124 SFINIMGQAG 133
>gi|325662866|ref|ZP_08151435.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470918|gb|EGC74147.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 163
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ D ++M A+R ++ L + C+IV +I RG HAE+ A+
Sbjct: 2 NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+A T YVTLEPC
Sbjct: 60 RKASRKMDDWRLEDCTMYVTLEPCQMCS 87
>gi|6572098|emb|CAB63082.1| riboflavin-specific deaminase [Bartonella bacilliformis]
Length = 107
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ I + +L +L G+ S+L+EGGA F+N+ VD +I + + +++G
Sbjct: 6 CVHSIEISNNFMQPLAILQLLCQLGINSVLLEGGAETGEKFLNAGCVDHLICFYASVILG 65
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
E I +P E YL F + +D + K LC Q L
Sbjct: 66 ENRIKAPYFETYLS-EFNEIETKMLENDRLRRWRRKILCSQGL 107
>gi|172056061|ref|YP_001812521.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum
255-15]
gi|171988582|gb|ACB59504.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum
255-15]
Length = 169
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ +M A+ ++ G + C+IVK VI G HAE
Sbjct: 1 MMERHEHYMRLAIEEAKKAKAIGEV----PIGCVIVKGDEVIATGYNHRETNHQATAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+EEA G YVTLEPC
Sbjct: 57 LLAIEEACNKLANWRLEGCELYVTLEPCPMC 87
>gi|297737907|emb|CBI27108.3| unnamed protein product [Vitis vinifera]
Length = 1151
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL ++ P V ++V+ G +I RG HAE+ +
Sbjct: 948 KIDEMFMREALLEAKKAA-NAWEVP-VGAVLVQHGKIIARGCNRVEELRDSTAHAEMICI 1005
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA T YVTLEPC
Sbjct: 1006 REASNLLRTWRLSETTLYVTLEPCPMC 1032
>gi|225423812|ref|XP_002277950.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1358
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL ++ P V ++V+ G +I RG HAE+ +
Sbjct: 1155 KIDEMFMREALLEAKKAA-NAWEVP-VGAVLVQHGKIIARGCNRVEELRDSTAHAEMICI 1212
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA T YVTLEPC
Sbjct: 1213 REASNLLRTWRLSETTLYVTLEPCPMC 1239
>gi|60593936|pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
gi|60593937|pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
gi|60593938|pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
gi|60593939|pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
F+ ALR ++ G V +IVK+G +I + + HAE+ A++
Sbjct: 24 EYFLKVALREAKRAFEKGEV----PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIK 79
Query: 62 EAGEE-----ARGATAYVTLEPCSHYGR 84
EA G YVTLEPC
Sbjct: 80 EACRRLNTKYLEGCELYVTLEPCIMCSY 107
>gi|227356250|ref|ZP_03840639.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
gi|227163714|gb|EEI48630.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906]
Length = 176
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M A+ + +G V ++V D +I +G H
Sbjct: 1 MNKIKDDIYWMHKAIEQAHKAQQLGEI----PVGAVLVADNKIIAKGWNHSIIDNDPTAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ AL + G+ + AT Y+TLEPC
Sbjct: 57 AEIMALRKGGKHLQNYRLLDATLYITLEPCVMC 89
>gi|302379537|ref|ZP_07268022.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna ACS-171-V-Col3]
gi|302312444|gb|EFK94440.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna ACS-171-V-Col3]
Length = 155
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ + D +FM A+ ++ L V C+IVK+G +I + T HAE++
Sbjct: 1 MENNDEKFMIKAIEQAKIAFDL--DEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 59 AINQATKVIGNFRLDDCTMYVTLEPCVMC 87
>gi|170718532|ref|YP_001783741.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
gi|168826661|gb|ACA32032.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336]
Length = 166
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHA 55
S FD + M AL + +G V ++V K G ++ G HA
Sbjct: 2 RSDFDEKMMRYALSLADKAEALGEI----PVGAVLVDKQGDILAEGWNLSIIHNDPTAHA 57
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+ AL +AG++ + T YVTLEPC+
Sbjct: 58 EIIALRQAGQKLQNYRLLDTTLYVTLEPCTMC 89
>gi|147676360|ref|YP_001210575.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum
SI]
gi|146272457|dbj|BAF58206.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum
SI]
Length = 156
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
A +M AL ++ +G V ++V+DG +IGRG T HAE+ A+
Sbjct: 6 HAGYMREALAEAKKAYGLGEV----PVGAVVVRDGEIIGRGHNLRETLKDSTAHAEILAM 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA G Y T+EPC+
Sbjct: 62 REAARIVGDWRLNGTVLYSTIEPCAMC 88
>gi|262370390|ref|ZP_06063716.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262314732|gb|EEY95773.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 166
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D+ +M AL + G V +IV +IG G A HAEVQ
Sbjct: 6 KIDSEWMQLALEQAAIAASKGEV----PVGAVIVSQNKIIGSGFNAPITLNDPTAHAEVQ 61
Query: 59 ALEEAGEEARG------ATAYVTLEPCSHY 82
AL +A + + A YVTLEPC+
Sbjct: 62 ALRDACQNTQNYRLPDDAVMYVTLEPCTMC 91
>gi|254361249|ref|ZP_04977392.1| cytosine deaminase [Mannheimia haemolytica PHL213]
gi|153092745|gb|EDN73788.1| cytosine deaminase [Mannheimia haemolytica PHL213]
Length = 174
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHA 55
+S D FM AL + G V ++V K+ +IGRG HA
Sbjct: 14 ISEQDIAFMQYALDLADLAEAKGEI----PVGAVLVDKNQQIIGRGWNQTIQLCDPSAHA 69
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+QA+ +AG+ T YVTLEPC
Sbjct: 70 EMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMC 101
>gi|194735718|ref|YP_002115631.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197301052|ref|ZP_02663371.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204929496|ref|ZP_03220570.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|194711220|gb|ACF90441.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288879|gb|EDY28252.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204321215|gb|EDZ06415.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 172
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|194469725|ref|ZP_03075709.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197248207|ref|YP_002147526.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200387835|ref|ZP_03214447.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205358526|ref|ZP_02657204.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205359943|ref|ZP_02833442.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194456089|gb|EDX44928.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197211910|gb|ACH49307.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|199604933|gb|EDZ03478.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205333662|gb|EDZ20426.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205341963|gb|EDZ28727.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 172
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|220919906|ref|YP_002495209.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
2060]
gi|219952326|gb|ACL62717.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
2060]
Length = 160
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D +FM+ A+ S + S C+IV+DG ++ G H E++
Sbjct: 1 MTDDDKKFMARAIELSEKTSLVESAGGVFGCVIVQDGEILAEGANRVVAENDPTWHGEIE 60
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + + R AT Y + EPC
Sbjct: 61 AIRKACKAQGSFKLRDATLYTSAEPCPMC 89
>gi|262278921|ref|ZP_06056706.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262259272|gb|EEY78005.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 167
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M A + G V ++V VIG G A HAE+QA+
Sbjct: 6 DEYWMQLAYEQAELAAQQGEI----PVGAVVVSQNRVIGSGYNAPISLLDPTAHAEIQAI 61
Query: 61 EEAGEEARG------ATAYVTLEPCSHY 82
A AT YVTLEPC+
Sbjct: 62 RAACLSLENYRLPEDATLYVTLEPCTMC 89
>gi|225023945|ref|ZP_03713137.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
23834]
gi|224942970|gb|EEG24179.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC
23834]
Length = 254
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M AL+ + + G V ++V+ G +IGRG T + C HAE+ AL
Sbjct: 108 EHWMQQALQLAEQALAAGEV----PVGAVVVRRGEIIGRGANACVTEHSVCRHAEIAALT 163
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
EAG G YVTLEPCS
Sbjct: 164 EAGRRLGNYRLDGCDLYVTLEPCSMC 189
>gi|160882011|ref|YP_001560979.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans
ISDg]
gi|160430677|gb|ABX44240.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans
ISDg]
Length = 161
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 6 FDAR--FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
D + +M AA+ ++ G + C+IV D +I RG HAE+
Sbjct: 1 MDEKIKYMKAAIVQAKKAALIGEV----PIGCVIVYDNKIIARGYNKRNTKKTTLAHAEI 56
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYG 83
A+E+A G T YVTLEPC
Sbjct: 57 LAIEKASRYLNDWRLEGCTMYVTLEPCQMCS 87
>gi|103488226|ref|YP_617787.1| CMP/dCMP deaminase, zinc-binding [Sphingopyxis alaskensis RB2256]
gi|98978303|gb|ABF54454.1| tRNA-adenosine deaminase [Sphingopyxis alaskensis RB2256]
Length = 155
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL +R G V +IVKDG VI G HAE+ A+ A
Sbjct: 10 MRRALDLARIAADWGEV----PVGAVIVKDGAVIAEGHNRPRESHDPTAHAEIVAMRMAA 65
Query: 64 ----GEEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 66 AKLGNERLDGCDLYVTLEPCAMC 88
>gi|291562950|emb|CBL41766.1| Cytosine/adenosine deaminases [butyrate-producing bacterium
SS3/4]
Length = 186
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M + + +M A+R ++ L + C+IV DG +I RG HAE
Sbjct: 7 MRKMTIEEHYMKEAIRQAKKAAAL--KEVPIGCVIVYDGRIIARGYNRRTVDKNVLAHAE 64
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A G T YVTLEPC
Sbjct: 65 IIAMRRACRILGDWRLEGCTMYVTLEPCPMC 95
>gi|315505529|ref|YP_004084416.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|315412148|gb|ADU10265.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 229
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP
Sbjct: 1 MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60
Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L R + SP+++ + L ++ ++
Sbjct: 61 RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + D + ++ L GRGV L+VEGG +V F+ + L D + L +
Sbjct: 121 EQVGGVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
+G+G P + +G+ + V G V Y + C
Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227
>gi|302868074|ref|YP_003836711.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302570933|gb|ADL47135.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
Length = 229
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP
Sbjct: 1 MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60
Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L R + SP+++ + L ++ ++
Sbjct: 61 RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + D + ++ L GRGV L+VEGG +V F+ + L D + L +
Sbjct: 121 EQVGAVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
+G+G P + +G+ + V G V Y + C
Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227
>gi|150399410|ref|YP_001323177.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Methanococcus vannielii SB]
gi|150012113|gb|ABR54565.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus vannielii SB]
Length = 357
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 9/223 (4%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
H+ + ++ D + S + K L + ++ +
Sbjct: 133 NFDDMLLPHVISNVGMTLDGKLATVSNDSRISSENDLKRVHELRKEVDGILVGIGTILKD 192
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV----TENDDPVLAL 258
D ++ + + +P+RI++D ++ + ++++ + + E D+ + L
Sbjct: 193 DPRLTVHKVPAVPKENPIRIVVDSSLRIPMTARVLNSDAKTIIATTKPSSNEKDEKIRKL 252
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ +LK L+ L +G+ +L+EGG + L+ I +Y +
Sbjct: 253 ISMGVTVIQTGAKKVNLKDLMNELYKQGIKKILLEGGGTLNFGMFKENLISEIRVYVAPK 312
Query: 319 VIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356
+ G P+ ++ + + LEYI
Sbjct: 313 IFGGSNAPTYVDGEGFKTVEDSPKLELKNHYILDDGIILEYIV 355
>gi|323499747|ref|ZP_08104710.1| tRNA-specific adenosine deaminase [Vibrio sinaloensis DSM 21326]
gi|323315193|gb|EGA68241.1| tRNA-specific adenosine deaminase [Vibrio sinaloensis DSM 21326]
Length = 129
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|296276694|ref|ZP_06859201.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
subsp. aureus MR1]
Length = 156
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|207723447|ref|YP_002253846.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum MolK2]
gi|206588648|emb|CAQ35611.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum MolK2]
Length = 194
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 24 MSAHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 81
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 82 MRALRQAAVTLGNYRLPECEVFVTLEPCVMC 112
>gi|119715918|ref|YP_922883.1| deaminase-reductase domain-containing protein [Nocardioides sp.
JS614]
gi|119536579|gb|ABL81196.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
JS614]
Length = 231
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 12/221 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R + L +S D + A + ++ ++V +RA+SDAI+VG TV D+P
Sbjct: 1 MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHF--------KLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L R ++ R + +L + T ++ T P
Sbjct: 61 RLLVRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEAR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ ++++ L RGV L+VEGG + F+ L D + L +
Sbjct: 121 SRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
+G+ +++G V G V L Y
Sbjct: 181 FFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRY 221
>gi|110636535|ref|YP_676742.1| cytosine/adenosine deaminase [Cytophaga hutchinsonii ATCC 33406]
gi|110279216|gb|ABG57402.1| cytosine/adenosine deaminase [Cytophaga hutchinsonii ATCC 33406]
Length = 148
Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL+ ++ G V ++V + +I R HAE+ A+
Sbjct: 7 DEHFMREALKEAQKAFEKGEI----PVGAVVVSNNQIISRAYNQTELLSDVTAHAEMLAI 62
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T +VTLEPC
Sbjct: 63 TAAANHLGGKYLSDCTLFVTLEPCVMC 89
>gi|126179969|ref|YP_001047934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
marisnigri JR1]
gi|125862763|gb|ABN57952.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanoculleus marisnigri JR1]
Length = 226
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 14/225 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R + + IA+S D I V I+G +V ++A+SDAI+VGIGTVLAD+P L
Sbjct: 1 MRPFVFVNIAMSADGKISTRERRQVRISGNEDYLRVDRIKAESDAIMVGIGTVLADNPSL 60
Query: 208 TCRLNG--------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
T + ++ +P+RI++D + D+ I+ ++ V++ A
Sbjct: 61 TVKSPELRAERRAAGKDENPIRIVVDGRGRTPPDADILHKGSGKRIVAVSKKAPKKAVEA 120
Query: 260 FRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
R++ ++ + + LL L +GV L+VEGG + + LVD + + I
Sbjct: 121 LREQAAVVVGGEETVDLRGLLEELHRQGVRRLMVEGGGTLIWTLFEQGLVDELQAFVGNI 180
Query: 319 VIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKN 358
VIG P+P + + F + + + +
Sbjct: 181 VIGGKEAPTPTDGAGFLREEDFPRLRIIEAVRFDDGLLVRWEVER 225
>gi|198245375|ref|YP_002216635.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197939891|gb|ACH77224.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
Length = 172
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|17546170|ref|NP_519572.1| hydrolase [Ralstonia solanacearum GMI1000]
gi|17428466|emb|CAD15153.1| putative cytosine/adenosine deaminase protein [Ralstonia
solanacearum GMI1000]
Length = 183
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 13 MSAHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 71 MRALRQAAVRLGNYRLPECEVFVTLEPCVMC 101
>gi|194451068|ref|YP_002046630.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|195874089|ref|ZP_02700525.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205357850|ref|ZP_02573795.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205359212|ref|ZP_02668290.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205360435|ref|ZP_02683354.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|213053109|ref|ZP_03345987.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213425288|ref|ZP_03358038.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213586542|ref|ZP_03368368.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650179|ref|ZP_03380232.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857782|ref|ZP_03384753.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|150421689|sp|Q8XGY4|TADA_SALTI RecName: Full=tRNA-specific adenosine deaminase
gi|150421690|sp|Q7CQ08|TADA_SALTY RecName: Full=tRNA-specific adenosine deaminase
gi|194409372|gb|ACF69591.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|195630767|gb|EDX49359.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205329109|gb|EDZ15873.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205337614|gb|EDZ24378.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205349365|gb|EDZ35996.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|312913557|dbj|BAJ37531.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321222726|gb|EFX47797.1| tRNA-specific adenosine-34 deaminase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 172
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|104783359|ref|YP_609857.1| cytidine/deoxycytidylate deaminase [Pseudomonas entomophila L48]
gi|95112346|emb|CAK17073.1| putative cytidine/deoxycytidylate deaminase [Pseudomonas
entomophila L48]
Length = 145
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + +G V ++V+ G VIG+G HAE+ A+ A
Sbjct: 1 MRLALELAAQGAALGEV----PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ G+T YVTLEPCS
Sbjct: 57 KSASNYRLPGSTLYVTLEPCSMC 79
>gi|329897048|ref|ZP_08271820.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
IMCC3088]
gi|328921488|gb|EGG28874.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
IMCC3088]
Length = 159
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ D +M AL + G V C+IV+DG +I G + HAE+
Sbjct: 2 NEDEYWMRQALLQAEQAYACGEV----PVGCVIVRDGSLIASGHNVVISSADPSAHAEIV 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG---RSPPCAQFIIECGIRRVVVCVDDPDVR 110
AL AG A+ YVTLEPC + I + +
Sbjct: 58 ALRHAGSRIGNYRLVDASLYVTLEPCLMCVGAMVHARVQRLIFAATEPKAGAVCSRCEAL 117
Query: 111 VSGRGLQWLSQKGIIVDRM 129
+ +G ++ +
Sbjct: 118 NFDHLNHRVQWQGGVMGQQ 136
>gi|197264537|ref|ZP_03164611.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205356928|ref|ZP_02343159.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|197242792|gb|EDY25412.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205325427|gb|EDZ13266.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 172
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|160936895|ref|ZP_02084259.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
BAA-613]
gi|158440085|gb|EDP17832.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC
BAA-613]
Length = 244
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
D FM ALR ++ G + C+IV+ +I RG HAE+ ++
Sbjct: 95 DEGFMREALRQAQKAAAIGDV----PIGCVIVRGDKIIARGYNRRNADKSVLSHAEIISI 150
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + T YVTLEPC
Sbjct: 151 KKACKKIGDWRLEDCTMYVTLEPCPMC 177
>gi|319790641|ref|YP_004152274.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio
ammonificans HB-1]
gi|317115143|gb|ADU97633.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio
ammonificans HB-1]
Length = 148
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D F+ ALR + + G + ++V++G VI + HAE+ A+
Sbjct: 3 DLYFLRLALREAEKALSFGEV----PIGAVVVRNGEVIAKAFNRKEFLQDPTAHAELIAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA T Y T+EPC
Sbjct: 59 REAARKLNSWRLNDCTIYSTVEPCIMC 85
>gi|284046792|ref|YP_003397132.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
14684]
gi|283951013|gb|ADB53757.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
14684]
Length = 154
Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D +M A+R + + + V ++V DG V+ G HAE
Sbjct: 5 FFPRDEYYMRLAMREADRALE--HDDVPVGAVVVHDGEVVATGHNERELRQDPTAHAEAI 62
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
AL EA YVTLEPC+
Sbjct: 63 ALREAARHLGSWRVLDTVLYVTLEPCAMC 91
>gi|302382996|ref|YP_003818819.1| bifunctional deaminase-reductase domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302193624|gb|ADL01196.1| bifunctional deaminase-reductase domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 210
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 10/214 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R IT K+A S D IG + S ITG ++ Q H LRA DA+LVG+ TVLADDP L
Sbjct: 1 MRPRITWKVATSLDGRIGTSTGESQWITGPQAREQGHRLRATHDAVLVGVETVLADDPRL 60
Query: 208 TCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
T R +G P+R++LD + +++ + L +P++ +
Sbjct: 61 TVRLPDGETAADPLRVVLDSRLRTPPFARLARAGTLILT-----TREPIVIGEAEIVRVA 115
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
++ +L L RGV SL++EGG VA F+ + +VD+I +R+ I++G G P
Sbjct: 116 GDSQGRPTVEAVLETLSARGVRSLMIEGGGRVAACFVTAGVVDAIEWFRAPILLGGDGRP 175
Query: 327 SP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L + + + G D+ Y
Sbjct: 176 GVASLALARLAHAPRYRRLAVEPMGDDLWERYEK 209
>gi|289825514|ref|ZP_06544721.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 172
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSDVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|194445660|ref|YP_002041831.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194404323|gb|ACF64545.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 172
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M D +M AL ++ V ++V + VIG G G HA
Sbjct: 1 MSEVELDHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL + G T YVTLEPC
Sbjct: 59 EIMALRQGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|258625208|ref|ZP_05720121.1| zinc-binding domain protein [Vibrio mimicus VM603]
gi|258582498|gb|EEW07334.1| zinc-binding domain protein [Vibrio mimicus VM603]
Length = 157
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M A+ + G V ++V+DG +I G T + HAE++ + +AG
Sbjct: 1 MRRAIMLAAQAEEQGEV----PVGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 57 KVLSNYRLLDTTLYVTLEPCPMC 79
>gi|87310742|ref|ZP_01092869.1| cytosine deaminase [Blastopirellula marina DSM 3645]
gi|87286499|gb|EAQ78406.1| cytosine deaminase [Blastopirellula marina DSM 3645]
Length = 166
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
SF FM AL + V +IV + VI HAE+ A+
Sbjct: 14 SFHQIFMYQALELAEQAARE--KEVPVGAIIVHNNRVIAAAHNQRETLHDPTAHAEMIAI 71
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+A E + T YVTLEPC
Sbjct: 72 TQAAESLQNWRLADCTLYVTLEPCPMC 98
>gi|228475284|ref|ZP_04060009.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119]
gi|228270749|gb|EEK12158.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119]
Length = 162
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A+ ++ G + +IVKD +I R T HAE
Sbjct: 2 TNDEFYMKCAIEEAKKARQLGEV----PIGAVIVKDNDIISRAHNLRETLQQPTAHAEHL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVIGSWRLEDCTLYVTLEPCVMCAGTVVMSR 94
>gi|238917935|ref|YP_002931452.1| hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC
27750]
gi|238873295|gb|ACR73005.1| Hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC
27750]
Length = 176
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
D R+M A+ ++ + + C+IV +G VIGRG HAE
Sbjct: 13 FEKDDYRYMKQAITQAKKAYKLNEV----PIGCVIVYEGKVIGRGYNRRNTDKTSLGHAE 68
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+++A T YVTLEPC
Sbjct: 69 ITAIKKASRYMNDWRLENCTLYVTLEPCQMC 99
>gi|15923548|ref|NP_371082.1| cytosine deaminase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926236|ref|NP_373769.1| hypothetical protein SA0516 [Staphylococcus aureus subsp. aureus
N315]
gi|21282242|ref|NP_645330.1| hypothetical protein MW0513 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485423|ref|YP_042644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
gi|87160687|ref|YP_493246.1| putative deaminase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194321|ref|YP_499113.1| hypothetical protein SAOUHSC_00541 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267018|ref|YP_001245961.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus subsp.
aureus JH9]
gi|150393065|ref|YP_001315740.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|151220732|ref|YP_001331554.1| hypothetical protein NWMN_0520 [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156978887|ref|YP_001441146.1| hypothetical protein SAHV_0556 [Staphylococcus aureus subsp.
aureus Mu3]
gi|161508798|ref|YP_001574457.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221141004|ref|ZP_03565497.1| deaminase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315668|ref|ZP_04838881.1| putative deaminase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253732567|ref|ZP_04866732.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
gi|255005352|ref|ZP_05143953.2| putative deaminase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795343|ref|ZP_05644322.1| deaminase [Staphylococcus aureus A9781]
gi|258408970|ref|ZP_05681251.1| deaminase [Staphylococcus aureus A9763]
gi|258420392|ref|ZP_05683335.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
gi|258422595|ref|ZP_05685501.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
gi|258439312|ref|ZP_05690244.1| cytosine deaminase [Staphylococcus aureus A9299]
gi|258444052|ref|ZP_05692389.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
gi|258446321|ref|ZP_05694479.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
gi|258448414|ref|ZP_05696529.1| deaminase [Staphylococcus aureus A6224]
gi|258452708|ref|ZP_05700706.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453770|ref|ZP_05701744.1| cytosine deaminase [Staphylococcus aureus A5937]
gi|262049601|ref|ZP_06022470.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
gi|262052438|ref|ZP_06024638.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
gi|269202181|ref|YP_003281450.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
subsp. aureus ED98]
gi|282894994|ref|ZP_06303217.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
gi|282924473|ref|ZP_06332145.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
gi|282928896|ref|ZP_06336487.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
gi|294850335|ref|ZP_06791069.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
gi|295406935|ref|ZP_06816738.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
gi|297208728|ref|ZP_06925156.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246241|ref|ZP_06930090.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
gi|300912818|ref|ZP_07130260.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381843|ref|ZP_07364490.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|13700450|dbj|BAB41747.1| SA0516 [Staphylococcus aureus subsp. aureus N315]
gi|14246326|dbj|BAB56720.1| similar to cytosine deaminase [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203678|dbj|BAB94378.1| MW0513 [Staphylococcus aureus subsp. aureus MW2]
gi|49243866|emb|CAG42291.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
gi|87126661|gb|ABD21175.1| putative deaminase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201879|gb|ABD29689.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147740087|gb|ABQ48385.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
JH9]
gi|149945517|gb|ABR51453.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp.
aureus JH1]
gi|150373532|dbj|BAF66792.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721022|dbj|BAF77439.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|160367607|gb|ABX28578.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253729496|gb|EES98225.1| deaminase [Staphylococcus aureus subsp. aureus TCH130]
gi|257789315|gb|EEV27655.1| deaminase [Staphylococcus aureus A9781]
gi|257840321|gb|EEV64784.1| deaminase [Staphylococcus aureus A9763]
gi|257843582|gb|EEV67988.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719]
gi|257847167|gb|EEV71175.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635]
gi|257847649|gb|EEV71648.1| cytosine deaminase [Staphylococcus aureus A9299]
gi|257850722|gb|EEV74667.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115]
gi|257854915|gb|EEV77860.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300]
gi|257858283|gb|EEV81170.1| deaminase [Staphylococcus aureus A6224]
gi|257859581|gb|EEV82431.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864026|gb|EEV86780.1| cytosine deaminase [Staphylococcus aureus A5937]
gi|259159684|gb|EEW44728.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3]
gi|259162341|gb|EEW46914.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30]
gi|262074471|gb|ACY10444.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
subsp. aureus ED98]
gi|269940131|emb|CBI48507.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20]
gi|282589504|gb|EFB94593.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102]
gi|282592884|gb|EFB97888.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765]
gi|282762676|gb|EFC02813.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117]
gi|285816259|gb|ADC36746.1| tRNA-specific adenosine-34 deaminase [Staphylococcus aureus
04-02981]
gi|294822847|gb|EFG39282.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754]
gi|294968166|gb|EFG44192.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819]
gi|296886673|gb|EFH25578.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176839|gb|EFH36097.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796]
gi|300885922|gb|EFK81125.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302332271|gb|ADL22464.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302750450|gb|ADL64627.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304339629|gb|EFM05576.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312829054|emb|CBX33896.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128851|gb|EFT84850.1| deaminase [Staphylococcus aureus subsp. aureus CGS03]
gi|315196629|gb|EFU26976.1| deaminase [Staphylococcus aureus subsp. aureus CGS01]
gi|320141577|gb|EFW33416.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320141794|gb|EFW33622.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus aureus subsp. aureus MRSA177]
gi|323439830|gb|EGA97547.1| putative deaminase [Staphylococcus aureus O11]
gi|323443069|gb|EGB00689.1| putative deaminase [Staphylococcus aureus O46]
gi|329313279|gb|AEB87692.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
T0131]
gi|329727928|gb|EGG64377.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus aureus subsp. aureus 21172]
gi|329731027|gb|EGG67400.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus aureus subsp. aureus 21189]
gi|329731987|gb|EGG68343.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus aureus subsp. aureus 21193]
Length = 156
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|160876246|ref|YP_001555562.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS195]
gi|160861768|gb|ABX50302.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS195]
gi|315268435|gb|ADT95288.1| CMP/dCMP deaminase zinc-binding protein [Shewanella baltica
OS678]
Length = 175
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D ++M A+ + G V ++VKDG I G + HAE+ L
Sbjct: 13 DEQWMQVAMLMAEKAEAEGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCL 68
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EAG AT YVTLEPC+
Sbjct: 69 REAGRLVENYRLLDATLYVTLEPCAMC 95
>gi|317493152|ref|ZP_07951575.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918812|gb|EFV40148.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 170
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 3 VSSF-DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
+S DA +M AL ++ G V ++V D VIG+G T + HA
Sbjct: 1 MSELNDAYWMKQALALAQKAWEQGEV----PVGAILVLDDEVIGQGWNRPITRHDPTAHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL++ G+ AT YVTLEPC
Sbjct: 57 EIMALQQGGQIVQNYRLLNATLYVTLEPCVMC 88
>gi|168210507|ref|ZP_02636132.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170711409|gb|EDT23591.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 143
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVKDG +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLNGCEMYVTLEPCPMC 80
>gi|71907361|ref|YP_284948.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Dechloromonas aromatica RCB]
gi|71846982|gb|AAZ46478.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Dechloromonas aromatica RCB]
Length = 157
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +F++ A+ +R + +IV+DG +I G + HAE+ A+
Sbjct: 4 DDQFLARAIELARQGS-ESGEGGPFGAVIVRDGRIIAEGWNRVVASHDPTAHAEIGAIRT 62
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A G T Y + EPC
Sbjct: 63 ACAGQDHFHLHGCTLYASSEPCPMC 87
>gi|293608246|ref|ZP_06690549.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828819|gb|EFF87181.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122022|gb|ADY81545.1| tRNA-specific adenosine deaminase [Acinetobacter calcoaceticus
PHEA-2]
Length = 167
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M A + G V ++V VIG G A HAE+QA+
Sbjct: 6 DEYWMQLAYEQAELAAQQGEI----PVGAVLVSQNRVIGSGYNAPITLLDPTAHAEIQAI 61
Query: 61 EEAGEEARG------ATAYVTLEPCSHY 82
A T YVTLEPC+
Sbjct: 62 RAACSSLENYRLPEDTTLYVTLEPCTMC 89
>gi|167749860|ref|ZP_02421987.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
gi|167657172|gb|EDS01302.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702]
Length = 150
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQA 59
D +M+ + ++ G V ++V KDG +IG G HAE+ A
Sbjct: 4 DEEYMTLCIELAKKAAEKGEC----PVGAIVVDKDGRIIGEGYNMREAEQMPTAHAEIIA 59
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+E+A + T YVTLEPC
Sbjct: 60 IEQAAKAMNSWRLTECTLYVTLEPCPMC 87
>gi|161869845|ref|YP_001599014.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
meningitidis 053442]
gi|161595398|gb|ABX73058.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
meningitidis 053442]
Length = 239
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGREIQNYRLDGCDIYITLEPCAMC 174
>gi|297618676|ref|YP_003706781.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus voltae A3]
gi|297377653|gb|ADI35808.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanococcus voltae A3]
Length = 235
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 16/227 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ + ++ D + + K + + ++ + +
Sbjct: 1 MKPYVISNVGMTLDGKLSTVENDTRISGENDLKRVHQIRKDVDAIMVGIGTVLKDNPKLT 60
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-----------TENDDPVL 256
++ +P+RI++D + ++ LDS+++ + +
Sbjct: 61 IHKIPLENNKNPVRIVVDSNLRIPLDSRVLNEDAKTVIATTEYGSLEQSEKIKRIEKIKE 120
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
+ I DL+ L+ L + S+L+EGG + LVD + +Y +
Sbjct: 121 LESIENVEIIYSGNLKVDLELLMGKLSKMDIKSILLEGGGTLNWGMFEKNLVDEVRVYVA 180
Query: 317 QIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
+ G P+ ++ + N + + LEY K
Sbjct: 181 PKIFGGSNAPTYVDGDGFKTLEDCVNLELIDYYQMDEGIVLEYFIKK 227
>gi|300717977|ref|YP_003742780.1| tRNA-specific adenosine deaminase [Erwinia billingiae Eb661]
gi|299063813|emb|CAX60933.1| tRNA-specific adenosine deaminase [Erwinia billingiae Eb661]
Length = 171
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M D +M AL +R G V ++V+ IG G G H
Sbjct: 1 MSDKVSDEFWMRHALMLARRAWEEGEV----PVGAVLVQGDKAIGEGWNRPIGHHDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL + G+ T YVTLEPC
Sbjct: 57 AEIMALRQGGKVLENYRLLDTTLYVTLEPCVMC 89
>gi|183599769|ref|ZP_02961262.1| hypothetical protein PROSTU_03276 [Providencia stuartii ATCC
25827]
gi|188022032|gb|EDU60072.1| hypothetical protein PROSTU_03276 [Providencia stuartii ATCC
25827]
Length = 178
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + D +M AL ++ P V L+VKD +I G + HAE
Sbjct: 1 MTQAEVDEFWMKRALELAKNAQ-DAGEIP-VGALLVKDNQLIASGWNRSIESHDPTAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ L++ G T YVTLEPC
Sbjct: 59 IMVLQQGGRALSNYRLLDTTLYVTLEPCIMC 89
>gi|56459694|ref|YP_154975.1| cytosine/adenosine deaminase putative [Idiomarina loihiensis
L2TR]
gi|56178704|gb|AAV81426.1| Cytosine/adenosine deaminase putative [Idiomarina loihiensis
L2TR]
Length = 150
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
M AL + + V ++V D ++G G HAE QA+ AG+
Sbjct: 1 MQRALELAEQAQN--ADEVPVGAVLVMDDKIVGEGYNQVISLSDPSAHAEAQAIRSAGQA 58
Query: 66 ----EARGATAYVTLEPCSHY 82
AT YVTLEPC+
Sbjct: 59 IDNYRLVNATLYVTLEPCAMC 79
>gi|228956462|ref|ZP_04118260.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228803219|gb|EEM50039.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 166
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG +I T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEIISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 62 DDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|326800631|ref|YP_004318450.1| Guanine deaminase [Sphingobacterium sp. 21]
gi|326551395|gb|ADZ79780.1| Guanine deaminase [Sphingobacterium sp. 21]
Length = 160
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 1 MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGC 52
M S D F+ A+ + + + G C+IVKDG +IG+G +
Sbjct: 1 MMASKDDIIFLKKAIDLAVTGVKQNKGG-----PFGCIIVKDGKIIGKGCNSVTSTIDPT 55
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+ +A + + T Y + EPC
Sbjct: 56 AHAEIVAIRDACKHLGEYQLDDCTLYASCEPCPMC 90
>gi|298693889|gb|ADI97111.1| cytosine deaminase [Staphylococcus aureus subsp. aureus ED133]
Length = 156
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|266621805|ref|ZP_06114740.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM
13479]
gi|288866494|gb|EFC98792.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM
13479]
Length = 165
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D ++M AA+ +R +G + C+IV + +I RG HAE+
Sbjct: 2 NADEKYMRAAIGQARKAGAIGEV----PIGCVIVYEDKIIARGYNRRTIDKNVLSHAEII 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + G T YVTLEPC
Sbjct: 58 AIKKACKKIGDWRLEGCTMYVTLEPCPMC 86
>gi|114562317|ref|YP_749830.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
400]
gi|114333610|gb|ABI70992.1| tRNA-adenosine deaminase [Shewanella frigidimarina NCIMB 400]
Length = 189
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ D ++M A++ + G V ++VKD ++I G + HAE++
Sbjct: 30 AIDEKWMRLAMQLAEQAELKGEV----PVGAVLVKDDVLIASGCNLSIVNHDPTAHAEME 85
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
+ +AG+ T YVTLEPC+
Sbjct: 86 CIRQAGKVLENYRMLDTTLYVTLEPCTMC 114
>gi|73663465|ref|YP_302246.1| cytosine adenosine deaminase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495980|dbj|BAE19301.1| putative cytosine adenosine deaminase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 163
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ +M A+ ++ +G + +IVK+ +I R HAE
Sbjct: 2 TNHEFYMEVAIEEAKKAGNIGEV----PIGAIIVKNDEIIARAHNLRESEQNPTAHAEHI 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQ 90
A++ A G T YVTLEPC S ++
Sbjct: 58 AIQRAAAALGSWRLEGCTLYVTLEPCVMCAGSIVMSR 94
>gi|300113843|ref|YP_003760418.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
gi|299539780|gb|ADJ28097.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
Length = 155
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
ARFM+ A+ + +G ++V+DG ++GR HAEVQA+
Sbjct: 1 MHARFMAEAISLASKGMGD-GLGGPFGAVVVRDGEILGRACNDVIALRDPTAHAEVQAIR 59
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
A G T Y + EPC
Sbjct: 60 MACRNLNDFHLEGCTLYCSCEPCPMC 85
>gi|309390267|gb|ADO78147.1| tRNA-adenosine deaminase [Halanaerobium praevalens DSM 2228]
Length = 154
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D ++M AL +R + ++V + V+GRG HAE+ AL
Sbjct: 2 ENDIKYMKMALAEARKAYQRAEV--PIGAVVVCNDQVVGRGFNLREQTQDPTTHAEIIAL 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
EA YVTLEPC
Sbjct: 60 REAASNKVSWRLEDCQLYVTLEPCPMC 86
>gi|161612662|ref|YP_001586627.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362026|gb|ABX65794.1| hypothetical protein SPAB_00358 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 172
Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 7 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 64
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 65 QGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|205371946|ref|ZP_03224765.1| hypothetical protein Bcoam_00240 [Bacillus coahuilensis m4-4]
Length = 160
Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM A+ + + + +IVKDG VI G T HAEV A+++A
Sbjct: 4 EHFMKLAIEEALKAKEILEV--PIGAVIVKDGEVIATGHNLRETTQNAITHAEVIAIQKA 61
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E GA YVTLEPC
Sbjct: 62 CEKLGTWRLEGAELYVTLEPCPMCS 86
>gi|283469850|emb|CAQ49061.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus ST398]
Length = 156
Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I K VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAARLGEV----PIGAVITKGDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|261208197|ref|ZP_05922870.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
gi|289566587|ref|ZP_06447008.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
gi|294615830|ref|ZP_06695673.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
gi|260077454|gb|EEW65172.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
gi|289161632|gb|EFD09511.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF]
gi|291591320|gb|EFF22986.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636]
Length = 171
Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ L + ++V DG V+GRG T
Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E AT +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLEDATLFVTLEPCPMCS 94
>gi|166031359|ref|ZP_02234188.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
27755]
gi|166028764|gb|EDR47521.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC
27755]
Length = 157
Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D ++M A++ ++ +G + C+IV +I RG HAE+QA+
Sbjct: 4 DEKYMREAIKQAKKAYAIGEV----PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELQAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+A + T YVTLEPC
Sbjct: 60 RKASKKMEDWRLEECTMYVTLEPCQMCS 87
>gi|227891209|ref|ZP_04009014.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
gi|227867083|gb|EEJ74504.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741]
Length = 169
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 1 MPVSSF-DA---RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYG 50
M D +FM AL ++ G + C+IVKDG +IGRG +
Sbjct: 1 MIFLPLTDEQKVKFMKEALFEAKLAAKIGEV----PIGCVIVKDGKIIGRGHNLREHSQN 56
Query: 51 GCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A+EEA E +VTLEPC
Sbjct: 57 ATLHAEMLAIEEANETVNSWRLVDTQLFVTLEPCPMCS 94
>gi|88192205|pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna
Adenosine Deaminase, Tada, In Complex With Rna
gi|88192206|pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna
Adenosine Deaminase, Tada, In Complex With Rna
gi|88192207|pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna
Adenosine Deaminase, Tada, In Complex With Rna
gi|88192208|pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna
Adenosine Deaminase, Tada, In Complex With Rna
Length = 159
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 5 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 60
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 61 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 97
>gi|52424459|ref|YP_087596.1| hypothetical protein MS0404 [Mannheimia succiniciproducens
MBEL55E]
gi|52306511|gb|AAU37011.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 176
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEV 57
SFD + M+ AL + +G V ++V + G +IG G HAE+
Sbjct: 6 SFDEKMMNRALFLADKAEALGEI----PVGAVLVDERGNIIGEGWNLSIVNSDPTAHAEI 61
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A ++ + T YVTLEPC+
Sbjct: 62 IALRNAAQKIQNYRLLNTTLYVTLEPCTMC 91
>gi|259506813|ref|ZP_05749713.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
YS-314]
gi|259165599|gb|EEW50153.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
YS-314]
Length = 254
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 74/284 (26%), Positives = 111/284 (39%), Gaps = 34/284 (11%)
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G VD +
Sbjct: 1 PCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--VDTHLLGLPVPT 57
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
L +L R HITLK A + D S ITG ++ VH R + DAI+VG
Sbjct: 58 LSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDAIIVGT 117
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
GT L D+P LT R R ++ + S + +
Sbjct: 118 GTALTDNPSLTARGPAGLYDHQPRRVVIGRRPVPAGSNLDRLGFE--------------- 162
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + L L G +L+EGG +A + + + L+D+I Y +
Sbjct: 163 -------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDAIRAYVAP 209
Query: 318 IVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCLEYIGKN 358
++G G + G F G DV ++ K+
Sbjct: 210 AILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 253
>gi|206972670|ref|ZP_03233610.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH1134]
gi|228950569|ref|ZP_04112705.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229077294|ref|ZP_04209977.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
gi|229176621|ref|ZP_04304027.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
gi|206732390|gb|EDZ49572.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH1134]
gi|228606851|gb|EEK64266.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W]
gi|228706017|gb|EEL58322.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2]
gi|228809112|gb|EEM55595.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 166
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|225387328|ref|ZP_03757092.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
DSM 15981]
gi|225046577|gb|EEG56823.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme
DSM 15981]
Length = 162
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D R+M A+R ++ +G + C+IV + +I RG HAE+
Sbjct: 2 TTDERYMKEAVRQAKKASALGEV----PIGCVIVYEDKIIARGYNRRMVDQNVLSHAEII 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 58 AIRKACKKMGDWRLENCTLYVTLEPCPMC 86
>gi|207743199|ref|YP_002259591.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum
IPO1609]
gi|206594596|emb|CAQ61523.1| cytosine/adenosine deaminase protein [Ralstonia solanacearum
IPO1609]
Length = 178
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 8 MSAHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 65
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 66 MRALRQAAVTLGNYRLPECEVFVTLEPCVMC 96
>gi|163845756|ref|YP_001633800.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
aurantiacus J-10-fl]
gi|222523464|ref|YP_002567934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
Y-400-fl]
gi|163667045|gb|ABY33411.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
aurantiacus J-10-fl]
gi|222447343|gb|ACM51609.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp.
Y-400-fl]
Length = 221
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 15/218 (6%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R +TL A + D + S I+G S H LRA SDAI+VG+GTVL DDP
Sbjct: 1 MMRPRVTLCFAQTLDGRVAAVDGSSQWISGPESLRFCHHLRANSDAIMVGVGTVLRDDPR 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN-- 264
LT RL P+R+I+D H + + +I+ ++ P+ ++
Sbjct: 61 LTTRLVA--GPDPLRVIVDTHLRTPTTAAVIRDGAGTGTLLACTAAAPLERRIALQECGA 118
Query: 265 ----INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+ DL LLT L RGV S++VEGGA + S + + LVD++ + + I++
Sbjct: 119 TVLTMPEAAGGGVDLAALLTALGERGVASVMVEGGARLITSLLRANLVDALAVTIAPIIL 178
Query: 321 GEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
G G PS + + + V +G+DV +E
Sbjct: 179 GSG--PSAIGDLGILTLNQALRLTNVTWTTYGADVVIE 214
>gi|308474568|ref|XP_003099505.1| hypothetical protein CRE_01142 [Caenorhabditis remanei]
gi|308266694|gb|EFP10647.1| hypothetical protein CRE_01142 [Caenorhabditis remanei]
Length = 153
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
FM A+ ++ + P +IVKDG VIG G HAEV A+ +A
Sbjct: 2 EFMKLAIEEAKKGMAKGDGGP-FGAVIVKDGKVIGVGHNMVLVNKDPTAHAEVTAIRDAC 60
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 61 KNVDNFDLSGCQLYTSCYPCPMC 83
>gi|282883358|ref|ZP_06291951.1| tRNA-specific adenosine deaminase [Peptoniphilus lacrimalis
315-B]
gi|281296769|gb|EFA89272.1| tRNA-specific adenosine deaminase [Peptoniphilus lacrimalis
315-B]
Length = 157
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
FM AL ++ N V C+IVKD +IG+G HAE+ A+
Sbjct: 10 YFMKKALELAKIS----YENFDVPVGCVIVKDKKIIGKGYNQKEKNKNPLCHAEINAINS 65
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + YVTLEPC
Sbjct: 66 ACKNLNSYHLEDCDMYVTLEPCLMC 90
>gi|213622248|ref|ZP_03375031.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 47
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG 51
D +M+ AL+ ++ T NP+V C+IV +G ++G G G
Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAG 47
>gi|307151761|ref|YP_003887145.1| Guanine deaminase [Cyanothece sp. PCC 7822]
gi|306981989|gb|ADN13870.1| Guanine deaminase [Cyanothece sp. PCC 7822]
Length = 158
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+S +FM+ A+ S + +IVK+ +I +G HAEV
Sbjct: 1 MSDIHHQFMAEAIALSFEGM-RLGKGGPFGAVIVKEHKIIAKGYNQVTSTNDPTAHAEVV 59
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + E +G Y + EPC
Sbjct: 60 AIRQACQLLQTFELKGCELYTSCEPCPMC 88
>gi|324324011|gb|ADY19271.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 166
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|168217743|ref|ZP_02643368.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens NCTC 8239]
gi|182380212|gb|EDT77691.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens NCTC 8239]
Length = 143
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVK+G +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLNGCEMYVTLEPCPMC 80
>gi|300770195|ref|ZP_07080074.1| tRNA-specific adenosine deaminase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762671|gb|EFK59488.1| tRNA-specific adenosine deaminase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 154
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D +M AAL ++ + +IV G +IG+G HAE+QA
Sbjct: 15 DEFYMKAALTLAKKAYEEDEV--PIGAVIVSQGKIIGKGYNLTERLNDVTAHAEMQAFTA 72
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVT+EPC
Sbjct: 73 ASSYLGGKYLKDCTLYVTVEPCVMC 97
>gi|228918972|ref|ZP_04082353.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840687|gb|EEM85947.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 166
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D FM A+ ++ P + +IV DG VI HAE
Sbjct: 1 MKQ-DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A++EA + AT YVTLEPC
Sbjct: 58 LLAIDEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|188994253|ref|YP_001928505.1| putative cytidine/deoxycytidylate deaminase [Porphyromonas
gingivalis ATCC 33277]
gi|188593933|dbj|BAG32908.1| putative cytidine/deoxycytidylate deaminase [Porphyromonas
gingivalis ATCC 33277]
Length = 159
Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + D M A+R + V +IVKDG +I HAE
Sbjct: 1 MNHTEQDKEMMREAIRLADESVANGGG--PFGAVIVKDGEIIAATSNRVTLDNDPTAHAE 58
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V + A + G T Y + EPC
Sbjct: 59 VNCIRMACKRLGTFDLSGCTIYTSCEPCPMC 89
>gi|332973009|gb|EGK10948.1| cytidine/deoxycytidylate deaminase [Psychrobacter sp. 1501(2011)]
Length = 207
Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
S D + M AAL ++ G + V ++V++G +IG G HAE+ A
Sbjct: 50 SLSDVKCMQAALELAQQ--GASKEEVPVGAVLVQEGNIIGEGFNQPILTCDPTAHAEIVA 107
Query: 60 LEEAGEEAR------GATAYVTLEPCSHY 82
L A T YVTLEPC+
Sbjct: 108 LRSACSALENYRLPANTTLYVTLEPCTMC 136
>gi|320108633|ref|YP_004184223.1| Guanine deaminase [Terriglobus saanensis SP1PR4]
gi|319927154|gb|ADV84229.1| Guanine deaminase [Terriglobus saanensis SP1PR4]
Length = 161
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 1 MPVSS-FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
MP+S+ A+FM A+R + +V + C+IV+DG VI + HA
Sbjct: 1 MPISNTQHAQFMQQAIRLATENV-TSGRGGPFGCVIVRDGEVIAARANSVTATNDPTAHA 59
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+ A + G Y + EPC
Sbjct: 60 EVNAIRAACAALGTFQLTGCDVYTSCEPCPMC 91
>gi|238918820|ref|YP_002932334.1| cytidine and deoxycytidylate deaminase family protein
[Edwardsiella ictaluri 93-146]
gi|238868388|gb|ACR68099.1| cytidine and deoxycytidylate deaminase family protein
[Edwardsiella ictaluri 93-146]
Length = 170
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D+ +M AL+ + G V ++V + VIG G T + HAE+ A
Sbjct: 5 DDSDWMRHALQLAEKARAQGEV----PVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMA 60
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L++ G AT YVTLEPC
Sbjct: 61 LQQGGAVMQNYRLLEATLYVTLEPCVMC 88
>gi|229067785|ref|ZP_04201104.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
gi|228715338|gb|EEL67195.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|229074082|ref|ZP_04207131.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
gi|229094742|ref|ZP_04225750.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
gi|229100808|ref|ZP_04231626.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
gi|228682615|gb|EEL36674.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28]
gi|228688680|gb|EEL42550.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29]
gi|228709045|gb|EEL61169.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|317126762|ref|YP_004093044.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
cellulosilyticus DSM 2522]
gi|315471710|gb|ADU28313.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
cellulosilyticus DSM 2522]
Length = 161
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 1 MPV--SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----C 52
M + S D FM AL + + G + +IV+D ++I RG
Sbjct: 1 MSLKQSKEDIFFMEQALVEAEKAMEIGEV----PIGAIIVRDNVIIARGHNLREQQQMVT 56
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+++A E T YVTLEPC
Sbjct: 57 NHAELIAIQKACEEVGSWRLEDCTLYVTLEPCPMC 91
>gi|227552392|ref|ZP_03982441.1| nucleoside deaminase [Enterococcus faecium TX1330]
gi|257888367|ref|ZP_05668020.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,141,733]
gi|257896743|ref|ZP_05676396.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
gi|293378075|ref|ZP_06624251.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium PC4.1]
gi|227178480|gb|EEI59452.1| nucleoside deaminase [Enterococcus faecium TX1330]
gi|257824421|gb|EEV51353.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,141,733]
gi|257833308|gb|EEV59729.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
gi|292643330|gb|EFF61464.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium PC4.1]
Length = 171
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ + ++V +G VIG+G T
Sbjct: 1 MVNTNLDAVDKEKWMRLALAEAKKA--EVLHEVPIGAVVVLEGEVIGKGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E A+ +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLENASLFVTLEPCPMCS 94
>gi|221133296|ref|ZP_03559601.1| CMP/dCMP deaminase, zinc-binding protein [Glaciecola sp.
HTCC2999]
Length = 175
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQ 58
D +M+ AL + T P V +IV D +IG G G HAE+
Sbjct: 8 EQDELWMTHALSLADKAQ-QTGEVP-VGAVIVLDNQIIGEGYNRSIINHDPCG--HAEIM 63
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A++ A + AT YVTLEPC+
Sbjct: 64 AIQSAAQHINNYRILDATMYVTLEPCAMC 92
>gi|291544028|emb|CBL17137.1| tRNA-adenosine deaminase [Ruminococcus sp. 18P13]
Length = 151
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD--GIVIGRGVTAY----GGCPHAEV 57
D +M A+ + +G V L+V+D G V+GRG HAEV
Sbjct: 2 DDFAYMRQAMELAEQAAALGEI----PVGALVVQDATGEVLGRGYNRREVDHDPTAHAEV 57
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
A+ +A G T YVTLEPC
Sbjct: 58 LAIRQAALAIGSWRLSGCTLYVTLEPCPMC 87
>gi|228937324|ref|ZP_04099972.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970210|ref|ZP_04130871.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976780|ref|ZP_04137194.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
gi|228782942|gb|EEM31106.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407]
gi|228789511|gb|EEM37429.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822349|gb|EEM68329.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326937814|gb|AEA13710.1| cytosine deaminase [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|161502277|ref|YP_001569389.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863624|gb|ABX20247.1| hypothetical protein SARI_00307 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 176
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 18 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 75
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 76 QGGLVLQNYRLLDTTLYVTLEPCVMC 101
>gi|293390603|ref|ZP_06634937.1| tRNA-specific adenosine deaminase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951137|gb|EFE01256.1| tRNA-specific adenosine deaminase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 175
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPH 54
+ D +FM AL + +G V ++V + G +IG G H
Sbjct: 4 SQTHLDEKFMRHALMLAGKAEALGEI----PVGAVLVSEAGEIIGEGWNLSIIHSDPTAH 59
Query: 55 AEVQALEEAGEEARGA-----TAYVTLEPCSHY 82
AE+ AL + G++ + T YVTLEPC+
Sbjct: 60 AEIVALRQGGQKLQNYRLLNITLYVTLEPCTMC 92
>gi|229039926|ref|ZP_04189692.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
gi|228727416|gb|EEL78607.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D FM A+ ++ P + +IV DG VI HAE
Sbjct: 1 MKQ-DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+++A + AT YVTLEPC
Sbjct: 58 LLAIDDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|110798954|ref|YP_694504.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens ATCC 13124]
gi|169343373|ref|ZP_02864377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens C str. JGS1495]
gi|182625368|ref|ZP_02953141.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
JGS1721]
gi|110673601|gb|ABG82588.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens ATCC 13124]
gi|169298459|gb|EDS80545.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens C str. JGS1495]
gi|177909365|gb|EDT71817.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str.
JGS1721]
Length = 143
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVKDG +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLHGCEMYVTLEPCPMC 80
>gi|18309013|ref|NP_560947.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens str. 13]
gi|18143688|dbj|BAB79737.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 143
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVKDG +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLHGCEMYVTLEPCPMC 80
>gi|303243154|ref|ZP_07329591.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
gi|302589304|gb|EFL59115.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
Length = 154
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM AL+ ++ T V +IVKDG++I RG HAE+ A+++A
Sbjct: 7 FMKEALKEAKKAYKKDET----PVGAVIVKDGVIISRGHNEKEMKNDPTLHAEISAIKKA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 63 CKKLNTWRLNDCDLYVTLEPCAMC 86
>gi|289627113|ref|ZP_06460067.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|330869937|gb|EGH04646.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 271
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARG 69
M+AA+ + ++ P V +IVK+G VI G HAE A+E+ + G
Sbjct: 11 MNAAIEQLKK----CTSYPKVGAVIVKNGEVISTGYRGEVSGKHAERVAIEKLPNPDLTG 66
Query: 70 ATAYVTLEPCSHYG---RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+T Y TLEPC CA + + + VV+ V DP+ R+ +G + L + G+ V
Sbjct: 67 STIYTTLEPCVEMHGLQPHKSCAGLLKDLNVEHVVIGVLDPNGRIYCQGYEELIKAGVKV 126
Query: 127 DRM 129
Sbjct: 127 TFF 129
>gi|300813981|ref|ZP_07094274.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511875|gb|EFK39082.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 157
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
FM AL ++ N V C+IVKD +IG+G HAE+ A+
Sbjct: 10 YFMKKALELAKIS----YKNFDVPVGCVIVKDKKIIGQGYNQKEKKKNPLCHAEINAINS 65
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + YVTLEPC
Sbjct: 66 ACKNLNSYHLEDCDMYVTLEPCLMC 90
>gi|15601943|ref|NP_245015.1| hypothetical protein PM0078 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|12720287|gb|AAK02162.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
S D ++M ALR + +G V ++V + G ++G G HAE
Sbjct: 3 SDMDEKWMRHALRLADKAEQLGEI----PVGAVLVDEQGNLLGEGWNLSISESDPTAHAE 58
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL + G+ + T YVTLEPC+
Sbjct: 59 IVALRQGGQRLQNYRLLNTTLYVTLEPCTMC 89
>gi|42521730|ref|NP_967110.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
bacteriovorus HD100]
gi|39574260|emb|CAE77764.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio
bacteriovorus HD100]
Length = 155
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
+ FM A+ SR ++ +IVKDG +IG G + HAEV A+
Sbjct: 1 MNKEFMLRAIELSRNNM-RAGAGGPFGAVIVKDGKIIGEGWNKVTSSNDPTAHAEVSAIR 59
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
+A + GA Y + EPC
Sbjct: 60 DACSKISNFELAGAEIYTSCEPCPMC 85
>gi|254804815|ref|YP_003083036.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
gi|304387765|ref|ZP_07369945.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
13091]
gi|254668357|emb|CBA05413.1| probable cytidine deaminase [Neisseria meningitidis alpha14]
gi|254671348|emb|CBA08775.1| putative hydrolase protein [Neisseria meningitidis alpha153]
gi|304338241|gb|EFM04371.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC
13091]
gi|319410268|emb|CBY90609.1| K01485 cytosine deaminase [Neisseria meningitidis WUE 2594]
Length = 239
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|169825638|ref|YP_001695796.1| hypothetical protein Bsph_0024 [Lysinibacillus sphaericus C3-41]
gi|168990126|gb|ACA37666.1| Hypothetical yaaJ protein [Lysinibacillus sphaericus C3-41]
Length = 170
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + D FM AL ++ +G + ++V DG +I R T H
Sbjct: 1 MDIFETDRLFMKQALEEAKKAAILGEV----PIGAVLVYDGEIIARAHNLRETTQNATTH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ ++EA + T YVTLEPC
Sbjct: 57 AELMVIQEACQKIGSWRLEKTTLYVTLEPCPMC 89
>gi|169824845|ref|YP_001692456.1| putative deaminase [Finegoldia magna ATCC 29328]
gi|167831650|dbj|BAG08566.1| putative deaminase [Finegoldia magna ATCC 29328]
Length = 155
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ + D +FM A+ +R + V C+IVK+G +I + T HAE++
Sbjct: 1 MENNDEKFMIKAIEQARIAFDMDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 59 AINQATQVIGNFRLDDCTMYVTLEPCVMC 87
>gi|218234516|ref|YP_002364872.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus B4264]
gi|218162473|gb|ACK62465.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus B4264]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 62 DDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|307596329|ref|YP_003902646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
gi|307551530|gb|ADN51595.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Vulcanisaeta distributa DSM 14429]
Length = 219
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 14/221 (6%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ ++ + A S D I S ++ ++H +RA DAI+VG TV+ DDP
Sbjct: 1 MPKPYVIIVSAASIDGRIASKTGYSR-LSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT R + P+R+++D ++ L +K++ +I+ TE D ++
Sbjct: 60 LTPRYVKAIRN-PIRVVIDGKLRIPLTAKVVTNKEAPTIIVTTEQADRNKIAQLMNMSVE 118
Query: 267 IIYCDCRDLK---KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG-- 321
+ + L + + + V +LVEGG + I LVD I L S V G
Sbjct: 119 VWVMGKERINLKDVLERLFMEKNVKRVLVEGGGHLNWELIKEGLVDEIRLTISPYVFGAG 178
Query: 322 -----EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
G P+ +E L V G +V L YI +
Sbjct: 179 TSFIEGEGYPTTIEGPRL--RLKSVNICECGQEVILNYIVE 217
>gi|229142827|ref|ZP_04271271.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
gi|229148430|ref|ZP_04276688.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
gi|296500855|ref|YP_003662555.1| cytosine deaminase [Bacillus thuringiensis BMB171]
gi|228635039|gb|EEK91610.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550]
gi|228640641|gb|EEK97027.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24]
gi|296321907|gb|ADH04835.1| cytosine deaminase [Bacillus thuringiensis BMB171]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 62 DDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|229159196|ref|ZP_04287222.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
gi|228624277|gb|EEK81077.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803]
Length = 166
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG VI HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAQKAE-EIQEVP-IGAVIVLDGEVISSAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|331086590|ref|ZP_08335668.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410423|gb|EGG89855.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 163
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ D ++M A+R ++ L + C+IV +I RG HAE+ A+
Sbjct: 2 NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
++A T YVTLEPC
Sbjct: 60 KKASRKMDDWRLEDCTMYVTLEPCQMCS 87
>gi|310657385|ref|YP_003935106.1| guanine deaminase [Clostridium sticklandii DSM 519]
gi|308824163|emb|CBH20201.1| guanine deaminase [Clostridium sticklandii]
Length = 154
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D FM A++ + +GL + P +IVKD VI RG HAE+ A+
Sbjct: 1 MDE-FMKEAIKEAFEGIGLRAGGP-FGAVIVKDNKVIARGHNKVIETNDPTAHAEIVAIR 58
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
EA + + Y T EPC
Sbjct: 59 EATKLLGRFDLSDCILYTTCEPCPMC 84
>gi|261416951|ref|YP_003250634.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373407|gb|ACX76152.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302327524|gb|ADL26725.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 164
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
++ D RFM A++ S +V +IVKDG V+ G HAEV
Sbjct: 7 NITDEDKRFMQMAIQLSVDNVDNGGG--PFGAVIVKDGEVVATGANRVVPNNDPTAHAEV 64
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A + G T Y + EPC
Sbjct: 65 TAIRNACAKLGTFMLDGCTVYTSCEPCPMC 94
>gi|126652937|ref|ZP_01725079.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus sp. B14905]
gi|126590267|gb|EAZ84389.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus sp. B14905]
Length = 170
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + D FM AL ++ +G + ++V DG +I R T H
Sbjct: 1 MDIFETDRLFMKQALEEAKKAAILGEV----PIGAVLVYDGEIIARAHNLRETTQNATTH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ ++EA + T YVTLEPC
Sbjct: 57 AELMVIQEACQKIGSWRLEKTTLYVTLEPCPMC 89
>gi|300704191|ref|YP_003745793.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CFBP2957]
gi|299071854|emb|CBJ43182.1| tRNA-specific adenosine deaminase [Ralstonia solanacearum CFBP2957]
Length = 183
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M D +M AL +R G V ++V+ ++G G A G HAE
Sbjct: 13 MSAHERDGYWMQQALVQARLAWGEGEV--PVGAVVVRGNEIVGVGYNAPIGTHDPSAHAE 70
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++AL +A +VTLEPC
Sbjct: 71 MRALRQAAVTLGNYRLPECEVFVTLEPCVMC 101
>gi|229113696|ref|ZP_04243133.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
gi|228669762|gb|EEL25167.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3]
Length = 166
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKNLGTWRLEDATLYVTLEPCPMC 88
>gi|209964980|ref|YP_002297895.1| guanine deaminase [Rhodospirillum centenum SW]
gi|209958446|gb|ACI99082.1| guanine deaminase [Rhodospirillum centenum SW]
Length = 158
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ + DA F+ A +R + +IV DG V+G G HAE+
Sbjct: 1 MQAQDALFLRRAAELARHGM-DAGAGGPFGAVIVLDGTVVGEGWNRVTSSNDPTAHAEIV 59
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ EA RGAT Y + EPC
Sbjct: 60 AIREACARLGRFDLRGATVYSSCEPCPMC 88
>gi|226328060|ref|ZP_03803578.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
gi|225203764|gb|EEG86118.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198]
Length = 176
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M D +M A+ + P V ++V D +I +G HAE
Sbjct: 1 MNKVKDDIYWMHKAIEQAHKAQ-EIGEIP-VGAVLVVDNKIIAKGWNHSIIDNDPTAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ AL + G+ + AT Y+TLEPC
Sbjct: 59 IMALRKGGKHLQNYRLLDATLYITLEPCVMC 89
>gi|164686927|ref|ZP_02210955.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
16795]
gi|164604030|gb|EDQ97495.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM
16795]
Length = 150
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 6 FDA-RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
D FM+ A+ ++ G T + +IVKD +IGRG T HAE+
Sbjct: 1 MDKIFFMNEAINEAKKAYDKGET----PIGAVIVKDSEIIGRGHNLTETLRDSTAHAEML 56
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYG 83
A+++A G YVT+EPC
Sbjct: 57 AIKDASETLGGWRLTDCDLYVTMEPCIMCS 86
>gi|325287796|ref|YP_004263586.1| Guanine deaminase [Cellulophaga lytica DSM 7489]
gi|324323250|gb|ADY30715.1| Guanine deaminase [Cellulophaga lytica DSM 7489]
Length = 156
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +FM A+ + + + C+IVKDG +IG+G HAEV A+ +
Sbjct: 3 DDKFMQEAVNAALKGMQN-NEGGPFGCVIVKDGKIIGKGNNKVTSTNDPTAHAEVTAIRD 61
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 ACKNLNSFQLDGCIIYTSCEPCPMC 86
>gi|229188306|ref|ZP_04315357.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
gi|228595174|gb|EEK52942.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876]
Length = 166
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|284023569|ref|ZP_06377967.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus
subsp. aureus 132]
Length = 156
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIFFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|93006499|ref|YP_580936.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter cryohalolentis K5]
gi|92394177|gb|ABE75452.1| tRNA-adenosine deaminase [Psychrobacter cryohalolentis K5]
Length = 197
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
S D ++M+ AL+ ++ V ++V + +IG+G G HAE+ A
Sbjct: 37 SVEDIKWMTEALKLAKQGAEK--EEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVA 94
Query: 60 LEEAGEEARG------ATAYVTLEPCSHY 82
L +A T YVTLEPC+
Sbjct: 95 LRDACTRLNNYRLPLKTTLYVTLEPCTMC 123
>gi|300113226|ref|YP_003759801.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
gi|299539163|gb|ADJ27480.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
Length = 188
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M AL +R+ T P V ++V++ ++G G + HAE+QA+
Sbjct: 41 EKDIPWMYHALALARYAE-ETGEVP-VGAVVVQEDEIVGEGWNCPINSRDPTAHAEIQAI 98
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + G T YVTLEPC+
Sbjct: 99 RAASQQLGNYRLVGTTLYVTLEPCAMC 125
>gi|261855229|ref|YP_003262512.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
neapolitanus c2]
gi|261835698|gb|ACX95465.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus
neapolitanus c2]
Length = 153
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPV-SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M + SS D +F+ AL + G V ++V+ G VI G A
Sbjct: 1 MKLPSSVDRQFIQQALDEANLAAADGEV----PVGAVVVRQGKVIATGRNAPIRLNDPSA 56
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ AL AG T YVTLEPC
Sbjct: 57 HAEILALRAAGMALANYRLDDCTLYVTLEPCPMC 90
>gi|163753582|ref|ZP_02160705.1| putative cytosine/adenosine deaminase [Kordia algicida OT-1]
gi|161325796|gb|EDP97122.1| putative cytosine/adenosine deaminase [Kordia algicida OT-1]
Length = 151
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL+ + G V +IV D VI RG T HAE+QA
Sbjct: 8 DDNYFMKKALQEAEMAFEKGEV----PVGAVIVIDNRVIARGHNLTETLNDVTAHAEMQA 63
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ + T YVTLEPC
Sbjct: 64 ITAAANFLGGKYLKRCTLYVTLEPCQMC 91
>gi|94969013|ref|YP_591061.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
Ellin345]
gi|94551063|gb|ABF40987.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis
Ellin345]
Length = 152
Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
D FM ALR + G + ++V +IGRG HAE+ A+
Sbjct: 3 DELFMEEALREAARAQASGEV----PIGAVVVYQDKIIGRGWNRPAFECDPTAHAEIIAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EAG +VTLEPC+
Sbjct: 59 REAGRELGNYRLTDCELFVTLEPCAMC 85
>gi|229107707|ref|ZP_04237345.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
gi|228675747|gb|EEL30953.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15]
Length = 166
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 62 DDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|30018294|ref|NP_829925.1| cytosine deaminase [Bacillus cereus ATCC 14579]
gi|229125538|ref|ZP_04254572.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
gi|29893834|gb|AAP07126.1| Cytosine deaminase [Bacillus cereus ATCC 14579]
gi|228657922|gb|EEL13726.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4]
Length = 166
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 62 DDACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|332800258|ref|YP_004461757.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp.
Re1]
gi|332697993|gb|AEE92450.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp.
Re1]
Length = 160
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A++ ++ + P + +IVK VI R T HAE+ A+
Sbjct: 8 KDDFFFMRQAIQEAKRAM-EIDEVP-IGAVIVKADEVIARAHNLRETLQDATAHAELLAI 65
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A E G T YVTLEPC
Sbjct: 66 RKACEVLGTWRLEGCTLYVTLEPCPMC 92
>gi|320539250|ref|ZP_08038920.1| putative cytidine and deoxycytidylate deaminase zinc-binding
protein [Serratia symbiotica str. Tucson]
gi|320030642|gb|EFW12651.1| putative cytidine and deoxycytidylate deaminase zinc-binding
protein [Serratia symbiotica str. Tucson]
Length = 170
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M D +M ALR + G V L+V D VIG G G H
Sbjct: 1 MMTKYSDQYWMCQALRLALRAQEEGEV----PVGALLVLDNQVIGEGWNRPIGRHDPTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL + G AT YVTLEPC
Sbjct: 57 AEIMALRQGGAVLQNYRLLNATLYVTLEPCVMC 89
>gi|288920814|ref|ZP_06415112.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
EUN1f]
gi|288347773|gb|EFC82052.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp.
EUN1f]
Length = 242
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 18/224 (8%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+ L A+S D I + ++ ++V +RA DAILVG GTV DDP L
Sbjct: 15 PHVVLSCAMSLDGRIDDCSPSRLILSSPADLDRVDEVRAGCDAILVGAGTVRRDDPGLAV 74
Query: 210 RLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
R ++ +P+R +L L ++I + V T A +
Sbjct: 75 RSQRRRDARTAAGRTPTPLRAVLTREGDLDPAARIFRDGADRVVYRATAGASGEAAASGG 134
Query: 262 KKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ L LL L GRGV LLVEGG + +F+ + LVD + L
Sbjct: 135 AAASPLAAVATVVDLPEPPLASLLRDLTGRGVRRLLVEGGTTIHTAFLTAGLVDELHLVV 194
Query: 316 SQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355
+ +GE P+ + G G V L Y+
Sbjct: 195 APFFVGEAAAPTFVGPGSFPFDAAHRLQLAEVSQLGDVVLLRYL 238
>gi|332534515|ref|ZP_08410352.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036083|gb|EGI72560.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas
haloplanktis ANT/505]
Length = 171
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D+ +M AL +++ L V ++VKD +I G T HAE
Sbjct: 1 MNEPFNDSYWMEQALLYAKQAELLDEI--PVGAIVVKDNQLISVGYNRSITDNDPSAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ EAG+ T YVTLEPCS
Sbjct: 59 MIAVREAGKVLNNYRLIDCTLYVTLEPCSMC 89
>gi|289675579|ref|ZP_06496469.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
C-terminal [Pseudomonas syringae pv. syringae FF5]
Length = 178
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 3/139 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
R+++D ++ LD+ + V + + DL++L+
Sbjct: 34 RVLIDGRLRVPLDAPFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMG 93
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKN 337
L RGV +LVE G +A +F LVD L+ + +G P PL +
Sbjct: 94 ELAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALE 153
Query: 338 FMCVRRDYFGSDVCLEYIG 356
+ G+D + +
Sbjct: 154 LNIMEMRAVGNDWRVIALP 172
>gi|145298514|ref|YP_001141355.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851286|gb|ABO89607.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 199
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D R+M A+ + G+ V ++V V+G G + C HAE+ A+
Sbjct: 34 EQDERWMRHAMALAARAEGIGEI--PVGAVLVLGDEVVGEGGNRSISEHDACAHAEIMAI 91
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
AG YVTLEPC
Sbjct: 92 RAAGARLENYRLIDTVLYVTLEPCCMC 118
>gi|262372477|ref|ZP_06065756.1| ComE operon protein 2 [Acinetobacter junii SH205]
gi|262312502|gb|EEY93587.1| ComE operon protein 2 [Acinetobacter junii SH205]
Length = 167
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M V+ D +M A + G V +IV +IG G A H
Sbjct: 1 MTVNK-DEYWMQFAYEQAAIAASQGEI----PVGAVIVSQDKIIGSGYNAPIQLSDPTAH 55
Query: 55 AEVQALEEAGEEARG------ATAYVTLEPCSHY 82
AE+QAL A A YVTLEPC+
Sbjct: 56 AEIQALRSACRAIENYRLPDDAVLYVTLEPCTMC 89
>gi|194366203|ref|YP_002028813.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
R551-3]
gi|194349007|gb|ACF52130.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia
R551-3]
Length = 174
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
PV D +M AL + P V ++V DG ++G G ++ HAE
Sbjct: 8 PVHDTDEHWMRHALALAERAQREFDEIP-VGAVLVSADGQLLGEGWNLNIASHDPSAHAE 66
Query: 57 VQALEE-----AGEEARGATAYVTLEPCSHY 82
+ A+ A G+T YVTLEPC+
Sbjct: 67 IVAMRSGGKLLANHRLLGSTLYVTLEPCAMC 97
>gi|42779100|ref|NP_976347.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Bacillus cereus ATCC 10987]
gi|42735015|gb|AAS38955.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus ATCC 10987]
Length = 166
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|257899803|ref|ZP_05679456.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
gi|293571142|ref|ZP_06682180.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
gi|257837715|gb|EEV62789.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
gi|291608755|gb|EFF38039.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980]
Length = 165
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ + ++V +G VIG+G T
Sbjct: 1 MVNTNLDAVDKEKWMRLALAEAKKA--EVLHEVPIGAVVVLEGEVIGKGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E A+ +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLENASLFVTLEPCPMCS 94
>gi|88799915|ref|ZP_01115487.1| hypothetical protein MED297_15045 [Reinekea sp. MED297]
gi|88777346|gb|EAR08549.1| hypothetical protein MED297_15045 [Reinekea sp. MED297]
Length = 162
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M S D +M AAL+ + G + ++ +IG G T H
Sbjct: 1 MIRS--DEDYMRAALQQAEQAYRAGEV----PIGAVVTYQDRIIGEGYNQTITQLDPSAH 54
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ A + G T YVT+EPC+
Sbjct: 55 AEMLAIRAAAQAIGNYRLVGCTLYVTIEPCTMC 87
>gi|269138128|ref|YP_003294828.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
gi|267983788|gb|ACY83617.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202]
Length = 180
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D+ +M AL+ + G V ++V + VIG G T + HAE+ A
Sbjct: 15 DDSDWMRHALQLAEKARAQGEV----PVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMA 70
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L++ G AT YVTLEPC
Sbjct: 71 LQQGGAIMQNYRLLEATLYVTLEPCVMC 98
>gi|206978348|ref|ZP_03239222.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus H3081.97]
gi|217957598|ref|YP_002336140.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH187]
gi|222093791|ref|YP_002527839.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus Q1]
gi|228983277|ref|ZP_04143492.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229136865|ref|ZP_04265494.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
gi|229153801|ref|ZP_04281933.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
gi|206743440|gb|EDZ54873.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus H3081.97]
gi|217065488|gb|ACJ79738.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH187]
gi|221237837|gb|ACM10547.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus Q1]
gi|228629670|gb|EEK86365.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342]
gi|228646600|gb|EEL02805.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26]
gi|228776457|gb|EEM24808.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 166
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|77164674|ref|YP_343199.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosococcus oceani ATCC 19707]
gi|254434877|ref|ZP_05048385.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Nitrosococcus oceani AFC27]
gi|76882988|gb|ABA57669.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosococcus oceani ATCC 19707]
gi|207091210|gb|EDZ68481.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Nitrosococcus oceani AFC27]
Length = 190
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
++M A+ SR + +I K+G ++G G HAE++A+ +A
Sbjct: 38 QWMRRAIELSRKAM-ELGDGFPFGSVIAKEGEIVGEGWNRSWVNRDPSAHAEIEAIRDAC 96
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ G Y + +PC
Sbjct: 97 KRLDTLSLEGCDVYASAQPCPMC 119
>gi|253731164|ref|ZP_04865329.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253725129|gb|EES93858.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959]
Length = 156
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A++ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIKEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + G T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|71066051|ref|YP_264778.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
gi|71039036|gb|AAZ19344.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4]
Length = 195
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
S D ++M+ AL+ ++ V ++V + +IG+G G HAE+ A
Sbjct: 35 SVEDIKWMTEALKLAKQGAER--EEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVA 92
Query: 60 LEEAGEEARG------ATAYVTLEPCSHY 82
L EA + T YVTLEPC+
Sbjct: 93 LREACAHLKNYRLPLQTTLYVTLEPCTMC 121
>gi|229523332|ref|ZP_04412739.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM
11079-80]
gi|229339695|gb|EEO04710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM
11079-80]
Length = 177
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 8 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 63
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 64 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 94
>gi|327483608|gb|AEA78015.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae LMA3894-4]
Length = 175
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 6 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 61
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 62 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 92
>gi|283778333|ref|YP_003369088.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
gi|283436786|gb|ADB15228.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
Length = 155
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
+M AL + V +IV G VI HAE+ A+ +
Sbjct: 5 HDYYMQLALNEASAAFDE--DEVPVGAVIVHSGRVIAAAHNQREALHDPTAHAEMIAITQ 62
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A E G T YVTLEPC
Sbjct: 63 AAESMGDWRLEGCTLYVTLEPCIMCS 88
>gi|1296969|emb|CAA65178.1| orf150 [Porphyromonas gingivalis]
Length = 150
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
++ D R+M AL +R + +IV G ++ R HAE+
Sbjct: 5 TFATDDIRYMRIALEEARAAADEGEI--PIGAVIVCKGQIVARAHNRVERLNDPTAHAEM 62
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A G+ R T YVT+EPC
Sbjct: 63 LAITMAVDAIGGKYLRDCTLYVTVEPCLMC 92
>gi|15612596|ref|NP_240899.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
gi|10172645|dbj|BAB03752.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125]
Length = 159
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ D +M AL + +G + +IVKDG+V+ + HAE
Sbjct: 1 MQKDDLYYMREALVQADEAERLGEV----PIGAVIVKDGVVVAKAYNLREINQQAIAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+E+A + G T YVTLEPC
Sbjct: 57 LLAIEKACKALGTWRLTGCTLYVTLEPCPMC 87
>gi|229530028|ref|ZP_04419418.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
gi|229333802|gb|EEN99288.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)]
Length = 193
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|158319077|ref|YP_001511584.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
gi|158139276|gb|ABW17588.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
Length = 154
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM A+ ++ + ++VKD +IGRG T HAE+ A++EA
Sbjct: 5 ENFMLEAIEEAKKAFNK--KEVPIGAVVVKDNEIIGRGHNLRETTKNSISHAEIMAIQEA 62
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T YVT+EPC
Sbjct: 63 CKFLGGWRLTDCTLYVTIEPCPMC 86
>gi|94310515|ref|YP_583725.1| tRNA-adenosine deaminase [Cupriavidus metallidurans CH34]
gi|93354367|gb|ABF08456.1| tRNA-specific adenosine deaminase [Cupriavidus metallidurans
CH34]
Length = 189
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D +M+AAL +R G V ++V D +I RG HAE+Q
Sbjct: 12 ERDRFYMAAALDEARLAEAAGEV----PVGAVVVWDDKIIARGHNLPIRSVDPSAHAEMQ 67
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHYG 83
AL A + YVTLEPC
Sbjct: 68 ALRAAAKVLGNYRMPECEIYVTLEPCPMCS 97
>gi|297581254|ref|ZP_06943178.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
gi|297534570|gb|EFH73407.1| zinc-binding domain-containing protein [Vibrio cholerae RC385]
Length = 193
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|323465305|gb|ADX77458.1| tRNA-specific adenosine deaminase [Staphylococcus
pseudintermedius ED99]
Length = 157
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+MS AL +R G + ++VK+G +I R T HAE A+
Sbjct: 4 HQYYMSIALEEARKAAKKGEV----PIGAVVVKNGKIIARAHNLRETDQSPTAHAEHLAM 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A G T YVTLEPC + ++
Sbjct: 60 ERAAAQLGTWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|168206176|ref|ZP_02632181.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens E str. JGS1987]
gi|170662306|gb|EDT14989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens E str. JGS1987]
Length = 143
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVK+G +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLHGCEMYVTLEPCPMC 80
>gi|229513031|ref|ZP_04402497.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
gi|254285542|ref|ZP_04960506.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
gi|150424404|gb|EDN16341.1| zinc-binding domain protein [Vibrio cholerae AM-19226]
gi|229349924|gb|EEO14878.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21]
Length = 193
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|325286553|ref|YP_004262343.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
7489]
gi|324322007|gb|ADY29472.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
7489]
Length = 149
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M D FM AL ++ G V +IV +I R H
Sbjct: 1 MINPFDDTYFMKKALEEAQAAYDKGEV----PVGAVIVIKDRIIARAHNLTEQLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ T YVTLEPC
Sbjct: 57 AEMQAITSAANFLGGKYLENCTLYVTLEPCQMC 89
>gi|87121678|ref|ZP_01077565.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas
sp. MED121]
gi|86162929|gb|EAQ64207.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas
sp. MED121]
Length = 162
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + G V ++V D +IG G + HAE+QA+ +A
Sbjct: 1 MERALVLADKAATEGEV----PVGAILVLDNEIIGEGYNSPISTCDPTAHAEIQAIRDAC 56
Query: 65 EEARG-----ATAYVTLEPCSHY 82
+ AT YVTLEPCS
Sbjct: 57 KNVANYRLPKATLYVTLEPCSMC 79
>gi|210631978|ref|ZP_03297143.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM
13279]
gi|210159780|gb|EEA90751.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM
13279]
Length = 647
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D RFMS AL +R G + ++V +G VI R HAE
Sbjct: 6 AVDERFMSMALEEARAAASIGEV----PIGAVVVHEGRVIARAHNRREADEDPSAHAEFA 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA G T YVTLEPC
Sbjct: 62 AMMEASRALGRWRLTGCTVYVTLEPCLMC 90
>gi|110803707|ref|YP_697380.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens SM101]
gi|110684208|gb|ABG87578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens SM101]
Length = 143
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVK+G +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLHGCEMYVTLEPCPMC 80
>gi|269468375|gb|EEZ80040.1| cytosine/adenosine deaminase [uncultured SUP05 cluster bacterium]
Length = 156
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 4 SSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
SS D ++M AL +R V ++VK+ +I HAE+
Sbjct: 5 SSLDEKWMKIALEQARFAQAKNEV----PVGAILVKNDQLIASAHNQPISNNDPTAHAEI 60
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
Q L AG+ T YVTLEPC+
Sbjct: 61 QLLRVAGKRLNNYRLPNTTLYVTLEPCTMC 90
>gi|49482788|ref|YP_040012.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257424672|ref|ZP_05601099.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427340|ref|ZP_05603739.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429977|ref|ZP_05606361.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 68-397]
gi|257432678|ref|ZP_05609038.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257435582|ref|ZP_05611630.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
M876]
gi|282903146|ref|ZP_06311037.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus C160]
gi|282904936|ref|ZP_06312794.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282907886|ref|ZP_06315721.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910199|ref|ZP_06318003.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913391|ref|ZP_06321180.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus M899]
gi|282923308|ref|ZP_06330988.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
C101]
gi|283957356|ref|ZP_06374809.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293500437|ref|ZP_06666288.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
58-424]
gi|293509382|ref|ZP_06668093.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
M809]
gi|293523969|ref|ZP_06670656.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus M1015]
gi|295427097|ref|ZP_06819733.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297590551|ref|ZP_06949190.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus MN8]
gi|49240917|emb|CAG39584.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257272242|gb|EEV04365.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275533|gb|EEV07006.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279174|gb|EEV09775.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus 68-397]
gi|257282093|gb|EEV12228.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus E1410]
gi|257284773|gb|EEV14892.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
M876]
gi|282314176|gb|EFB44566.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
C101]
gi|282322423|gb|EFB52745.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus M899]
gi|282325591|gb|EFB55899.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328270|gb|EFB58548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331761|gb|EFB61272.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282596101|gb|EFC01062.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus C160]
gi|283790807|gb|EFC29622.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920932|gb|EFD97993.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
aureus subsp. aureus M1015]
gi|291095442|gb|EFE25703.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
58-424]
gi|291467479|gb|EFF09994.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
M809]
gi|295128885|gb|EFG58515.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297576850|gb|EFH95565.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus MN8]
gi|312439022|gb|ADQ78093.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193922|gb|EFU24316.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00]
Length = 156
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARAHNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEDCTLYVTLEPCVMCAGTIVMSR 94
>gi|224824536|ref|ZP_03697643.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
gi|224603029|gb|EEG09205.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002]
Length = 242
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
RFM+ A+R ++ G V ++VK+G +IGRG T++ HAE+ AL
Sbjct: 95 QRFMAEAIRLAKAAAAEGEV----PVGAVVVKEGRIIGRGFNRPVTSHDPSAHAEMVALR 150
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
EA G YVTLEPC G
Sbjct: 151 EAAATLGNYRLSGCDLYVTLEPCPMCG 177
>gi|160914820|ref|ZP_02077034.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
gi|158433360|gb|EDP11649.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991]
Length = 152
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
+ +FM A++ ++ + + C+IVKD +I RG HAE+ A+E
Sbjct: 1 MNEKFMVEAIKEAKKAELI--DEVPIGCVIVKDDKIIARGHNLRESKQRSTAHAEIIAIE 58
Query: 62 EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+A + + G + YVTLEPC P C+ I++ I VV DP +
Sbjct: 59 KACRKLKSWRLEGCSLYVTLEPC------PMCSGAILQSRIEHVVYGAKDPKGGCMESCM 112
Query: 117 QWLSQKGI 124
KG
Sbjct: 113 NMYEVKGF 120
>gi|24213844|ref|NP_711325.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
interrogans serovar Lai str. 56601]
gi|45658378|ref|YP_002464.1| hypothetical protein LIC12536 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24194684|gb|AAN48343.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
interrogans serovar Lai str. 56601]
gi|45601621|gb|AAS71101.1| RibD [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 466
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59
++S +F + S +G +S NP V+CLI V++ + +G T+ G PHAE A
Sbjct: 1 MTSLPEKFREELRKLSFLSMGESSPNPPVSCLITDVENKRIFAKGRTSPTGGPHAERNAY 60
Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
G ++ +VT EPC+H+G++PPC I+E + + + DP+ GL
Sbjct: 61 YEFINNGLLSKPHNVWVTFEPCTHHGKTPPCLDLILEHKPKTLYYGLKDPNPLVRKNEGL 120
Query: 117 QWLSQKGIIVDRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
+ GI V + + L +++R +++ + +K AVS++ +V +
Sbjct: 121 EICRNAGIQVVSDFGLKEIAEESLFGFISRIEKQKPSMIIKSAVSKEGFFTTKDKATVRL 180
Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+G +S +LRA+ DA+L+G T+ D P L R+ G
Sbjct: 181 SGNLSDRLTSILRAKCDAVLIGPRTLFQDLPGLDFRIGGNW 221
>gi|295094398|emb|CBK83489.1| Cytosine/adenosine deaminases [Coprococcus sp. ART55/1]
Length = 169
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
++M A+ ++ + + + C+IV D +I RG HAE+ A+E
Sbjct: 16 IHEKYMDKAIAQAKRA--YANGDVPIGCVIVHDDRIIARGFNKRNLKKTTLAHAEILAIE 73
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + T YVTLEPC
Sbjct: 74 QASKKLGDWRLEECTMYVTLEPCQMC 99
>gi|229170871|ref|ZP_04298476.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
gi|228612606|gb|EEK69823.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3]
Length = 166
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ AL
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAL 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|149196365|ref|ZP_01873420.1| Putative cytosine/adenosine deaminase [Lentisphaera araneosa
HTCC2155]
gi|149140626|gb|EDM29024.1| Putative cytosine/adenosine deaminase [Lentisphaera araneosa
HTCC2155]
Length = 174
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M ALR + G + ++V +G VI + HAE+ AL
Sbjct: 20 DEHYMRMALRQAEQAFQAGEV----PIGAVVVHEGEVIAKAWNQVEMLKDATAHAEILAL 75
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A G T YVT EPC
Sbjct: 76 TQASAHLDRWRLHGCTLYVTKEPCPMC 102
>gi|325288211|ref|YP_004264392.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
gi|324963612|gb|ADY54391.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271]
Length = 148
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
+M AL+ + + + +IVK+G ++ T HAE+ A++
Sbjct: 3 HEDWMRLALKQAETALEKDEV--PIGAVIVKNGEILALAHNEKETNQDPTAHAEMLAIKR 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + GAT YVTLEPC
Sbjct: 61 AAQKLGAWRLSGATLYVTLEPCPMC 85
>gi|296113086|ref|YP_003627024.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis RH4]
gi|295920780|gb|ADG61131.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis RH4]
Length = 159
Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D M+ AL ++ G V ++V +G ++G G T HAE+ A+
Sbjct: 3 DVEMMNRALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAV 58
Query: 61 EEAGEEA------RGATAYVTLEPCSHY 82
A E +G YVTLEPC+
Sbjct: 59 RRACETLNNYRLPKGCILYVTLEPCTMC 86
>gi|300774752|ref|ZP_07084615.1| cytosine deaminase [Chryseobacterium gleum ATCC 35910]
gi|300506567|gb|EFK37702.1| cytosine deaminase [Chryseobacterium gleum ATCC 35910]
Length = 143
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D +M AL+ + + + C++V + +I R T HAE+QA+
Sbjct: 4 DEYYMKMALQEAEAALEKDEV--PIGCVVVSNNRIIARAHNLTETLNDVTAHAEMQAITS 61
Query: 63 A-----GEEARGATAYVTLEPCSHYG 83
A G+ + T YVT+EPC
Sbjct: 62 AANFLGGKYLKDCTLYVTMEPCVMCS 87
>gi|190574881|ref|YP_001972726.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
maltophilia K279a]
gi|190012803|emb|CAQ46432.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas
maltophilia K279a]
Length = 174
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
PV D +M AL + P V ++V DG ++G G ++ HAE
Sbjct: 8 PVHDADEHWMRHALALAERAQREFDEIP-VGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66
Query: 57 VQALEE-----AGEEARGATAYVTLEPCSHY 82
+ A+ A G+T YVTLEPC+
Sbjct: 67 IVAMRAGGKLLANHRLLGSTLYVTLEPCAMC 97
>gi|300114455|ref|YP_003761030.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
gi|299540392|gb|ADJ28709.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
Length = 187
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
++M A+ SR + +I K+G ++G G HAE++A+ +A
Sbjct: 38 QWMRRAIELSRKAM-ELGDGFPFGSVIAKEGEIVGEGWNRSWVNRDPSAHAEIEAIRDAC 96
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ G Y + +PC
Sbjct: 97 KRLDTLSLEGCDVYASAQPCPMC 119
>gi|158522912|ref|YP_001530782.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
gi|158511738|gb|ABW68705.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
Length = 157
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
FM A+ +R + ++V+DG ++G G H E+ A+
Sbjct: 2 EMHDAFMRRAIELARAGM-KAGDGGPFGAVVVRDGQIVGEGANRVLAHNDPTAHGEIVAI 60
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+A + G Y T +PC
Sbjct: 61 RDAAKRLGTYDLDGCVLYTTGQPCPMC 87
>gi|169836055|ref|ZP_02869243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [candidate
division TM7 single-cell isolate TM7a]
Length = 277
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 13/277 (4%)
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSH 151
++ G++R V+ DP+ +V+G+G+Q L GI V + +SE + + K +
Sbjct: 1 MKMGLKRCVIGSSDPNPKVAGKGVQILRNAGIEVRENVLKSECDKINQVFFKYIMTKIPY 60
Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
+ LK A++ D I S IT ++ +V L R + I+VGI TVLAD+P LT R
Sbjct: 61 LFLKCAITLDGKIATKTGNSKWITNETAREKVQLYRNKFMGIMVGINTVLADNPSLTAR- 119
Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-----LALAFRKKNIN 266
+P RII+DPHFK + IIK IIVT ++ K
Sbjct: 120 -VENGVNPYRIIIDPHFKTGKNHNIIKENSDEKTIIVTSKNNENSEKQLDFSENSKVKFV 178
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ K++L + G+ S+L+EGG ++ ++D+ ++ + ++G+
Sbjct: 179 FLNGTKFSFKEILCKIGQIGIDSILLEGGQSLISQAFEENVIDAGEIFIANKILGDEKGK 238
Query: 327 SPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
S + EK V+ + +G +V +E+ KN
Sbjct: 239 SFIVGFDREKMDEAVILKNVKYNVYGENVGMEFWQKN 275
>gi|326571142|gb|EGE21166.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC7]
Length = 159
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D M+ AL ++ G V ++V +G ++G G T HAE+ A
Sbjct: 2 HDVEMMNRALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVA 57
Query: 60 LEEAGEEA------RGATAYVTLEPCSHY 82
+ A E +G YVTLEPC+
Sbjct: 58 VRRACETLNNYRLPKGCILYVTLEPCTMC 86
>gi|319891528|ref|YP_004148403.1| tRNA-specific adenosine-34 deaminase [Staphylococcus
pseudintermedius HKU10-03]
gi|317161224|gb|ADV04767.1| tRNA-specific adenosine-34 deaminase [Staphylococcus
pseudintermedius HKU10-03]
Length = 157
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+MS AL ++ G + ++VK+G +I R T HAE A+
Sbjct: 4 HQYYMSIALEEAKKAAKKGEV----PIGAVVVKNGKIIARAHNLRETDQSPTAHAEHLAM 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A G T YVTLEPC + ++
Sbjct: 60 ERAAAQLGTWRLEGCTLYVTLEPCVMCAGTIVMSR 94
>gi|304558173|gb|ADM40837.1| tRNA-specific adenosine-34 deaminase [Edwardsiella tarda FL6-60]
Length = 170
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D+ +M AL+ + G V ++V + VIG G T + HAE+ A
Sbjct: 5 DDSDWMRHALQLAEKARAQGEV----PVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMA 60
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L++ G AT YVTLEPC
Sbjct: 61 LQQGGAIMQNYRLLEATLYVTLEPCVMC 88
>gi|218441962|ref|YP_002380291.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
gi|218174690|gb|ACK73423.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
Length = 158
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+S+ + +FM+ A+ S + +IVK+G +I +G HAEV
Sbjct: 1 MSNINDQFMAEAIALSFEGM-RLGEGGPFGAVIVKEGKIIAKGYNQVISSNDPTAHAEVV 59
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + + +G Y + EPC
Sbjct: 60 AIRHACQVLQNFDLKGCELYTSCEPCPMC 88
>gi|260221448|emb|CBA30021.1| hypothetical protein Csp_A15070 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 408
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M + D FMS AL + G V +IVK G VI +G H
Sbjct: 1 MLLIQSDEYFMSLALEQAIEAELAGEV----PVGAVIVKGGQVIAKGRNRTIEWNDPSAH 56
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
AEV AL+EA G +VTLEPC+
Sbjct: 57 AEVVALKEAARACGTHRLSGLQLFVTLEPCAMCS 90
>gi|284052809|ref|ZP_06383019.1| riboflavin-specific deaminase [Arthrospira platensis str. Paraca]
gi|291566856|dbj|BAI89128.1| putative riboflavin-specific deaminase [Arthrospira platensis
NIES-39]
Length = 234
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 14/232 (6%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R H T+ +A+S D I + AQ+DA+L G GT+
Sbjct: 1 MDEIIPTTRPHTTVILAMSADGKIADLMRSPARFGSNADIIHLERQIAQADAVLFGNGTL 60
Query: 201 LADDPELT--------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
A L R + P++I+ K++ K + + ++
Sbjct: 61 AAYGTVLRVSSTELLGDREKNGKPPQPVQIVCSASGKINPTLKFFQQPVPKWLLTTFLGG 120
Query: 253 DPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
P + + + + L L R + L V GG + S + +D
Sbjct: 121 QPWKRFSDHFDQVIVADDSNGVITWSEALQQLRDRDIQRLAVLGGGQLVASLMAHHAIDE 180
Query: 311 IILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGKN 358
L ++G P+P++ + + +V L Y K+
Sbjct: 181 FHLTVCPRILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKS 232
>gi|197285737|ref|YP_002151609.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
gi|194683224|emb|CAR43904.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320]
Length = 176
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M A+ + +G V ++V + +I +G H
Sbjct: 1 MNKIKDDIYWMHKAIEQAHKAQQLGEI----PVGAVLVAENKIIAKGWNHSIIDNDPTAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ AL + G+ + AT Y+TLEPC
Sbjct: 57 AEIMALRKGGKHLQNYRLLDATLYITLEPCVMC 89
>gi|167758650|ref|ZP_02430777.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC
35704]
gi|167663846|gb|EDS07976.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC
35704]
Length = 157
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ S D ++M A+R +R +G + C+IV +IGRG HAE
Sbjct: 1 MHSIDEKYMKEAIRQARKAYAIGEV----PIGCVIVYKDKIIGRGYNRRMADKNTLSHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ A+ +A T YVTLEPC
Sbjct: 57 LIAIRKASRKMGDWRLEECTMYVTLEPCQMCS 88
>gi|291520377|emb|CBK75598.1| Cytosine/adenosine deaminases [Butyrivibrio fibrisolvens 16/4]
Length = 179
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
++M+ AL+ +R + P + C+IV++ +I RG HAE+ A+++A
Sbjct: 28 EKYMAQALKEARKA-YDINEVP-IGCVIVQNDKIIARGYNRRNTDKSVLAHAEIAAIQKA 85
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 86 CKKTGDWRLEDCTLYVTLEPCQMC 109
>gi|295702259|ref|YP_003595334.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
gi|294799918|gb|ADF36984.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319]
Length = 156
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D ++M A+ + + +IV++ V+ T HAE+ A++E
Sbjct: 4 DEKYMRLAIDEALKAKDKLEV--PIGAVIVQNDEVVASAYNLRETEQRSVAHAELLAIDE 61
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A ++ R AT YVTLEPC
Sbjct: 62 ACKKLRTWRLEDATLYVTLEPCPMC 86
>gi|229823590|ref|ZP_04449659.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC
51271]
gi|229787034|gb|EEP23148.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC
51271]
Length = 178
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ +M AL + +G + L+VKDG+++ HAE+
Sbjct: 13 AQHEYWMQQALELADQAQALGEV----PIGALLVKDGVLLASAYNLREVNHQATAHAELL 68
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+E A + G T YVTLEPC
Sbjct: 69 AIEAANQALGAWRLEGCTLYVTLEPCPMC 97
>gi|311278508|ref|YP_003940739.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae
SCF1]
gi|308747703|gb|ADO47455.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae
SCF1]
Length = 165
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60
+M AL ++ G V ++V VIG G G HAE+ AL
Sbjct: 8 HEYWMRHALGLAQRAWDEGEV----PVGAVLVYQNQVIGEGWNRPIGRHDPTAHAEIMAL 63
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 64 RQGGLVLQNYRLIDTTLYVTLEPCVMC 90
>gi|283131328|dbj|BAI63333.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 183
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S + FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 9 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 99
>gi|229027869|ref|ZP_04184026.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
gi|228733445|gb|EEL84270.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271]
Length = 166
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|153001509|ref|YP_001367190.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
gi|151366127|gb|ABS09127.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185]
Length = 174
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 1 MPVS-----SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AY 49
M S D +M A+ + G V ++VKDG+ I G +
Sbjct: 1 MSDSLVDQMKLDEHWMQVAMLMAEKAEAEGEV----PVGAVLVKDGLQIATGYNLSISQH 56
Query: 50 GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ L EAG AT YVTLEPC+
Sbjct: 57 DPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCAMC 94
>gi|113867903|ref|YP_726392.1| cytosine deaminase [Ralstonia eutropha H16]
gi|113526679|emb|CAJ93024.1| cytosine deaminase [Ralstonia eutropha H16]
Length = 200
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
DAR+M AAL +R G V ++V + +I RG HAE+Q
Sbjct: 24 ERDARYMRAALEEARLAEAAGEV----PVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQ 79
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
AL A + YVTLEPC
Sbjct: 80 ALRAAAQVIGNYRMPECELYVTLEPCVMCS 109
>gi|229194412|ref|ZP_04321217.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
gi|228589068|gb|EEK47081.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293]
Length = 166
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 4 DQDIHFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|309380104|emb|CBX21515.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 239
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM AL ++ +G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|325144274|gb|EGC66579.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
M01-240013]
Length = 239
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSCHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|308389629|gb|ADO31949.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
meningitidis alpha710]
Length = 239
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSCHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|296314748|ref|ZP_06864689.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
43768]
gi|296838389|gb|EFH22327.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC
43768]
Length = 239
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSCHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|257066772|ref|YP_003153028.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
gi|256798652|gb|ACV29307.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
Length = 180
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
S D FM+ A+ +R + V ++V DG +IGRG HAE+
Sbjct: 21 TFSKEDYFFMAEAINEARVARFI--EEVPVGAVVVYDGKIIGRGHNLTYKGKSALKHAEL 78
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA T YVT+EPCS
Sbjct: 79 MAIKEASSWMDDFRLEECTMYVTMEPCSMC 108
>gi|212695506|ref|ZP_03303634.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
7454]
gi|212677506|gb|EEB37113.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM
7454]
Length = 180
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
D +M A+ ++ + C+IVK+G +I R HAE+ A++
Sbjct: 22 DDYFYMREAINEAKLARLE--EEVPIGCVIVKNGKIIARSHNYTYKGKSALKHAEILAID 79
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + T YVT+EPCS
Sbjct: 80 KASKYVGDFRLEDCTMYVTMEPCSMC 105
>gi|217972561|ref|YP_002357312.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS223]
gi|217497696|gb|ACK45889.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS223]
Length = 175
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VKDG I G + HAE+ L
Sbjct: 13 DEHWMQVAMLMAENAEAEGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCL 68
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EAG AT YVTLEPC+
Sbjct: 69 REAGRLVENYRLLDATLYVTLEPCAMC 95
>gi|269126070|ref|YP_003299440.1| bifunctional deaminase-reductase domain-containing protein
[Thermomonospora curvata DSM 43183]
gi|268311028|gb|ACY97402.1| bifunctional deaminase-reductase domain protein [Thermomonospora
curvata DSM 43183]
Length = 228
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 85/227 (37%), Gaps = 12/227 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L A+S D I A + ++ ++V +RA DAILVG T+ DDP
Sbjct: 1 MSDRPYVLLSCAMSVDGYIDDARPERLRLSSPADFDRVDGVRATCDAILVGAETIRRDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDP--------HFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+L + QE R + L S+ T ++ P LA
Sbjct: 61 KLLIKSPVRQERRAARGLPRQLTKVTLTLRGDLDPTSRFFTTGDCPKLVYAGSRAVPALA 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
I D D++ +L L RGV L+VEGG + F+ L D + L +
Sbjct: 121 ERLEGVAEVIDGGDPVDVRLVLADLARRGVRRLMVEGGGGMHTLFLTEGLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNLC 360
IG+ P + G ++ G L Y+ K
Sbjct: 181 FFIGDPSAPRFVHPGLFPQDPAHPMRLAEVTRIGDLALLRYLLKRSR 227
>gi|228898775|ref|ZP_04063059.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
4222]
gi|228860867|gb|EEN05243.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL
4222]
Length = 166
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG VI T HAE+ A+
Sbjct: 4 DRDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|229009532|ref|ZP_04166761.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
gi|229131029|ref|ZP_04259944.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
gi|228652424|gb|EEL08346.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196]
gi|228751743|gb|EEM01540.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048]
Length = 164
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 2 ERDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|116328771|ref|YP_798491.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116121515|gb|ABJ79558.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 432
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 16 RFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGA 70
+ S G +S NP V+CLI V + ++ +G T+ G PHAE A + G
Sbjct: 14 KLSFLSTGESSPNPPVSCLITDVDNARILAKGWTSPTGGPHAERNAYYEFVKNGFFKEPH 73
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRM 129
+VTLEPC+H G++PPC I+E + + DP+ GL+ ++GI+V
Sbjct: 74 NVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRGILVVAE 133
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +++R K+ + LK A+S++ V +G IS + +LR
Sbjct: 134 PGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNHLTSILR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE 216
A+ DA+LVG GT+ D+P L R+
Sbjct: 194 AKCDAVLVGPGTLFHDNPGLEFRIGENWP 222
>gi|229525486|ref|ZP_04414891.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
VL426]
gi|229339067|gb|EEO04084.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis
VL426]
Length = 193
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGWNSSITNHDATAHAE 79
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKVLSNYRLLDTTLYVTLEPCPMC 110
>gi|300860777|ref|ZP_07106864.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TUSoD Ef11]
gi|300849816|gb|EFK77566.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TUSoD Ef11]
gi|315146059|gb|EFT90075.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX2141]
Length = 173
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|254463267|ref|ZP_05076683.1| cytosine deaminase [Rhodobacterales bacterium HTCC2083]
gi|206679856|gb|EDZ44343.1| cytosine deaminase [Rhodobacteraceae bacterium HTCC2083]
Length = 157
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 1 MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPH 54
M +S FM AAL +R G V ++VKDG +IGRG T H
Sbjct: 9 MKFTS----FMEAALVEARLAEAAGEV----PVGAVVVKDGAIIGRGRNATRTGCDPSAH 60
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ EA + YVTLEPC+
Sbjct: 61 AEILAIREACAVLGQDRLVDCDLYVTLEPCAMC 93
>gi|293570161|ref|ZP_06681239.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071]
gi|291587310|gb|EFF19196.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071]
Length = 171
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ L + ++V DG VIGRG T
Sbjct: 1 MVNTNLDTVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E A +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPCPMCS 94
>gi|224111764|ref|XP_002315970.1| predicted protein [Populus trichocarpa]
gi|222865010|gb|EEF02141.1| predicted protein [Populus trichocarpa]
Length = 1071
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL ++ + P V ++V G +I RG HAE+ +
Sbjct: 927 KIDEMFMREALLDAKKAA-DSWEVP-VGAVMVHHGKIIARGYNLVEELRDSTAHAEMICI 984
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA + R T YVTLEPC
Sbjct: 985 REASNQLRSWRLSETTLYVTLEPCPMC 1011
>gi|304410027|ref|ZP_07391646.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
gi|307302260|ref|ZP_07582018.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
gi|304351436|gb|EFM15835.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183]
gi|306914298|gb|EFN44719.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175]
Length = 175
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VKDG I G + HAE+ L
Sbjct: 13 DEHWMQVAMLMAENAEAEGEV----PVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCL 68
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EAG AT YVTLEPC+
Sbjct: 69 REAGRLVENYRLLDATLYVTLEPCAMC 95
>gi|257783881|ref|YP_003179098.1| CMP/dCMP deaminase zinc-binding [Atopobium parvulum DSM 20469]
gi|257472388|gb|ACV50507.1| CMP/dCMP deaminase zinc-binding [Atopobium parvulum DSM 20469]
Length = 166
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
P ++ D ++M AL + +G + ++V G V+ HA
Sbjct: 11 PQAALDQKYMKLALEQAELAAQIGEV----PIGAVVVCGGEVVAVAHNRREIDNDPSAHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E A+++A + G T YVTLEPC
Sbjct: 67 EFLAMQKASKKLGRWRLSGCTVYVTLEPCLMC 98
>gi|223043054|ref|ZP_03613102.1| tRNA-specific adenosine deaminase [Staphylococcus capitis SK14]
gi|222443908|gb|EEE50005.1| tRNA-specific adenosine deaminase [Staphylococcus capitis SK14]
Length = 168
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
D +M A++ ++ +G + +IVK+ VI HAE A+
Sbjct: 4 DKDYMRLAIKEAQKAQALGEV----PIGAVIVKNNQVIAHAHNLRESLQLPTAHAEHIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A + T YVTLEPC + ++
Sbjct: 60 ERASKVVGSWRLEECTLYVTLEPCVMCAGAIVMSR 94
>gi|110833682|ref|YP_692541.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
borkumensis SK2]
gi|110646793|emb|CAL16269.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax
borkumensis SK2]
Length = 152
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
D +M AL +R G V L+V+ G ++G+G HAE+ A
Sbjct: 2 DDQDWMQQALMLARQAADQGEV----PVGALVVRGGQLLGQGYNQPITANDPSAHAEIIA 57
Query: 60 LEEAG-----EEARGATAYVTLEPCSHY 82
+ A G T YVTLEPC+
Sbjct: 58 MRSASLAEKNYRLSGCTLYVTLEPCTMC 85
>gi|158317044|ref|YP_001509552.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
gi|158112449|gb|ABW14646.1| bifunctional deaminase-reductase domain protein [Frankia sp.
EAN1pec]
Length = 252
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE- 335
LL L RG LLVEGG V +F+ + LVD + L + +GE P+ + G
Sbjct: 165 HLLDDLSRRGTRRLLVEGGTTVHTAFLTAGLVDELHLVIAPFFVGEAAAPTFVGPGSFPF 224
Query: 336 ---KNFMCVRRDYFGSDVCLEYI 355
V V L Y+
Sbjct: 225 DTAHRLRLVDVRQLDDVVLLRYL 247
>gi|283131371|dbj|BAI63375.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
gi|283131431|dbj|BAI63432.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 183
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 9 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 67 EMMAINEANAYEGNWRLLDTTMFVTIEPCVMCS 99
>gi|302390668|ref|YP_003826489.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
gi|302201296|gb|ADL08866.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646]
Length = 152
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
FM AL+ +R V +I +G +I R HAEV A+
Sbjct: 4 KDHEFFMREALKEARKAFEQ--DEVPVGAVIAYEGSIIARAHNLRERSQDATAHAEVLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ A E G + YVTLEPC
Sbjct: 62 KAACEAMGTWRLTGCSLYVTLEPCPMC 88
>gi|28209851|ref|NP_780795.1| cytosine deaminase [Clostridium tetani E88]
gi|28202286|gb|AAO34732.1| cytosine deaminase [Clostridium tetani E88]
Length = 146
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ +R + + + +IVK+ +IGRG + HAE+ A+ EA
Sbjct: 3 EYFMKEAVLEARKALNINEV--PIGAVIVKENKIIGRGHNLVEKSKNPLAHAEIIAIREA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G YVTLEPC
Sbjct: 61 CKSINNWRLNGCHMYVTLEPCPMC 84
>gi|293399195|ref|ZP_06643360.1| cytosine deaminase [Neisseria gonorrhoeae F62]
gi|291610609|gb|EFF39719.1| cytosine deaminase [Neisseria gonorrhoeae F62]
Length = 239
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM ALR + G V +IV DG +I HAE+ AL +
Sbjct: 94 YFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|239998824|ref|ZP_04718748.1| putative cytosine deaminase [Neisseria gonorrhoeae 35/02]
gi|240014261|ref|ZP_04721174.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI18]
gi|240016697|ref|ZP_04723237.1| putative cytosine deaminase [Neisseria gonorrhoeae FA6140]
gi|240121824|ref|ZP_04734786.1| putative cytosine deaminase [Neisseria gonorrhoeae PID24-1]
gi|260440688|ref|ZP_05794504.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI2]
gi|268594667|ref|ZP_06128834.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
35/02]
gi|291043998|ref|ZP_06569714.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
gi|268548056|gb|EEZ43474.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
35/02]
gi|291012461|gb|EFE04450.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2]
gi|317164113|gb|ADV07654.1| putative cytosine deaminase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 239
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM ALR + G V +IV DG +I HAE+ AL +
Sbjct: 94 YFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|240112750|ref|ZP_04727240.1| putative cytosine deaminase [Neisseria gonorrhoeae MS11]
gi|240115501|ref|ZP_04729563.1| putative cytosine deaminase [Neisseria gonorrhoeae PID18]
gi|240123350|ref|ZP_04736306.1| putative cytosine deaminase [Neisseria gonorrhoeae PID332]
gi|240128054|ref|ZP_04740715.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-93-1035]
gi|254493609|ref|ZP_05106780.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
gi|268598817|ref|ZP_06132984.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
gi|268601174|ref|ZP_06135341.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
PID18]
gi|268681975|ref|ZP_06148837.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
PID332]
gi|268686443|ref|ZP_06153305.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
SK-93-1035]
gi|226512649|gb|EEH61994.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291]
gi|268582948|gb|EEZ47624.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11]
gi|268585305|gb|EEZ49981.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
PID18]
gi|268622259|gb|EEZ54659.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
PID332]
gi|268626727|gb|EEZ59127.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
SK-93-1035]
Length = 239
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM ALR + G V +IV DG +I HAE+ AL +
Sbjct: 94 YFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|15617060|ref|NP_240273.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219681812|ref|YP_002468198.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|257471514|ref|ZP_05635513.1| riboflavin reductase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|20139386|sp|P57534|RIBD2_BUCAI RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|25403629|pir||G84983 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
[imported] - Buchnera sp. (strain APS)
gi|10039125|dbj|BAB13159.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219624655|gb|ACL30810.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
Length = 207
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 6/153 (3%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
P+R+I+D ++ IIKT + ++ D + + I +
Sbjct: 57 FPNKIFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHN 114
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
++ LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P +
Sbjct: 115 KKINIFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMI 174
Query: 331 EGYLE----KNFMCVRRDYFGSDVCLEYIGKNL 359
L+ F G D+ L K +
Sbjct: 175 YEKLKISNSLQFKFKNICQIGPDIRLILSPKKI 207
>gi|229165011|ref|ZP_04292809.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
gi|228618463|gb|EEK75490.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621]
Length = 164
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 2 ERDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|168214007|ref|ZP_02639632.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens CPE str. F4969]
gi|170714472|gb|EDT26654.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens CPE str. F4969]
Length = 143
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+S AL + G V +IVK+G +I R T HAE+ A+ EA
Sbjct: 1 MLSLALEEAEKAREKGEV----PVGAVIVKNGEIIARAHNLKETLKDPTAHAEMLAIREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 57 CNKLNNWRLHGCEMYVTLEPCPMC 80
>gi|34540529|ref|NP_905008.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
gi|188994633|ref|YP_001928885.1| putative cytosine/adenosine deaminase [Porphyromonas gingivalis
ATCC 33277]
gi|34396842|gb|AAQ65907.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
gi|188594313|dbj|BAG33288.1| putative cytosine/adenosine deaminase [Porphyromonas gingivalis
ATCC 33277]
Length = 150
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
++ D R+M AL +R + +IV G ++ R HAE+
Sbjct: 5 TFATDDIRYMRIALEEARAAADEGEI--PIGAVIVCKGQIVARAHNRVERLNDPTAHAEM 62
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A G+ R T YVT+EPC
Sbjct: 63 LAITMAVDAIGGKYLRDCTLYVTVEPCLMC 92
>gi|288931633|ref|YP_003435693.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Ferroglobus placidus DSM 10642]
gi|288893881|gb|ADC65418.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Ferroglobus placidus DSM 10642]
Length = 225
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 2/145 (1%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+P+R+++D ++ D+ I+ + + + D L K I + + DL +
Sbjct: 79 NPLRVVVDSKARIPEDALILNDEAETLLAVSKKADLEKLKKLQEKAMIFVAGEERVDLSE 138
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--E 335
L+ L GV L+VEGG + S LVD I +Y ++I P+ + L
Sbjct: 139 LMEFLYHIGVRKLMVEGGGELIASLFREGLVDEIYVYYGNVIIAGKNSPTIADGKSLDEP 198
Query: 336 KNFMCVRRDYFGSDVCLEYIGKNLC 360
+ G + + K
Sbjct: 199 AELELLEFKKLGGGILTRWRVKRKR 223
>gi|229053868|ref|ZP_04195305.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
gi|228721478|gb|EEL72995.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603]
Length = 164
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 2 ERDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|225016548|ref|ZP_03705740.1| hypothetical protein CLOSTMETH_00455 [Clostridium methylpentosum
DSM 5476]
gi|224950657|gb|EEG31866.1| hypothetical protein CLOSTMETH_00455 [Clostridium methylpentosum
DSM 5476]
Length = 254
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA- 63
M AL + +G V ++V+ G V+ + T HAE+ A+++A
Sbjct: 1 MRLALEQAARAAELGEV----PVGAVLVRGGEVVAQAYNRRETDKNALAHAELLAIDQAC 56
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G GAT YVTLEPC
Sbjct: 57 RALGGWRLFGATLYVTLEPCPMC 79
>gi|34558827|gb|AAQ75171.1| riboflavin biosynthesis protein [Alvinella pompejana epibiont 7G3]
Length = 335
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 77/371 (20%), Positives = 129/371 (34%), Gaps = 74/371 (19%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D FM A+ + + +T NP+V L+ +G V+ G HAEV L A EE
Sbjct: 4 DDIFMRVAIDRAWEYQLITYPNPAVGALVELNGRVLAVEAHREAGTSHAEVLVLLRAYEE 63
Query: 67 A---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
+ YVTLEPCSH G++P CA + + +R
Sbjct: 64 LSNRKIEFNRLDANLAHNFLLSLPRGFFSNCSIYVTLEPCSHTGKTPSCATLLSKLKPKR 123
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
VVV DP S G L + + + E + +KR+ + KIA +
Sbjct: 124 VVVGTLDPI--SSHSGGVELLKSVGVEVEVGVLEREAEELIEPFIIWQKRAFVIFKIAQT 181
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ IG ++ S +H +R++ +++G TV D P L CR G
Sbjct: 182 SNGRIG-----GGYLSSKESLTHLHKIRSKLSWLIIGGNTVRVDRPTLDCRFIGANP-PD 235
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
+ I+ + + V I++ + +L
Sbjct: 236 IAILSKKSLDEFDKTIPLFNIEDRIVEILSSDIFKKPSL--------------------- 274
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+LVEGG + + D ++ Y++ + PL +
Sbjct: 275 ----------ILVEGGEGTIGALRDK--FDWLLQYQTPKI-----SSHPLG-YGINLELE 316
Query: 340 CVRRDYFGSDV 350
+ + G D+
Sbjct: 317 PLHQMRSGVDL 327
>gi|69245245|ref|ZP_00603323.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Enterococcus faecium DO]
gi|257880130|ref|ZP_05659783.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,230,933]
gi|257882362|ref|ZP_05662015.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,502]
gi|257885559|ref|ZP_05665212.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,501]
gi|257891221|ref|ZP_05670874.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,410]
gi|257894033|ref|ZP_05673686.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,408]
gi|258614535|ref|ZP_05712305.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
faecium DO]
gi|260560261|ref|ZP_05832437.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
gi|293560645|ref|ZP_06677132.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162]
gi|294617818|ref|ZP_06697430.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679]
gi|294621156|ref|ZP_06700343.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317]
gi|314938786|ref|ZP_07846059.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133a04]
gi|314941552|ref|ZP_07848438.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133C]
gi|314947607|ref|ZP_07851016.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0082]
gi|314951363|ref|ZP_07854416.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133A]
gi|314993109|ref|ZP_07858496.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133B]
gi|314996760|ref|ZP_07861775.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133a01]
gi|68195920|gb|EAN10354.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Enterococcus faecium DO]
gi|257814358|gb|EEV43116.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,230,933]
gi|257818020|gb|EEV45348.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,502]
gi|257821415|gb|EEV48545.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,501]
gi|257827581|gb|EEV54207.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,410]
gi|257830412|gb|EEV57019.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium
1,231,408]
gi|260073606|gb|EEW61932.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
gi|291595929|gb|EFF27210.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679]
gi|291599272|gb|EFF30302.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317]
gi|291605396|gb|EFF34843.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162]
gi|313589110|gb|EFR67955.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133a01]
gi|313592389|gb|EFR71234.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133B]
gi|313596469|gb|EFR75314.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133A]
gi|313599640|gb|EFR78483.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133C]
gi|313641895|gb|EFS06475.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0133a04]
gi|313645848|gb|EFS10428.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecium TX0082]
Length = 171
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ L + ++V DG VIGRG T
Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E A +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPCPMCS 94
>gi|73670513|ref|YP_306528.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
gi|72397675|gb|AAZ71948.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
Length = 157
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 3 VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
+S D FM A+ S + G +IV++G ++ H
Sbjct: 1 MSDNDFLFMKRAIELSLENVKKGGG------PFGAVIVRNGEILAESCNMVTALNDPTAH 54
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ + EA + G T Y + EPC
Sbjct: 55 AEINVIREAARKLETFDLSGCTIYASCEPCPMC 87
>gi|228905818|ref|ZP_04069717.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL
200]
gi|228853826|gb|EEM98584.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL
200]
Length = 166
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ P + +IV DG VI T HAE+ A+
Sbjct: 4 DRDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|282891755|ref|ZP_06300236.1| hypothetical protein pah_c197o065 [Parachlamydia acanthamoebae
str. Hall's coccus]
gi|281498339|gb|EFB40677.1| hypothetical protein pah_c197o065 [Parachlamydia acanthamoebae
str. Hall's coccus]
Length = 161
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
FM A+ SR T +IVKDG +I G HAE+ A+
Sbjct: 4 KNHEEFMKRAIALSRKASIEEKTGGVFGAVIVKDGKIIAEGYNQVLKHNDPTWHAEMHAI 63
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EA ++ G Y + E C
Sbjct: 64 REACKKLGKPHLEGCDLYTSAECCPMC 90
>gi|329766024|ref|ZP_08257585.1| deaminase-reductase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137479|gb|EGG41754.1| deaminase-reductase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 218
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+ R H+ L A+S D I S + ++H LR++ DAILVG TV DD
Sbjct: 1 MEKSRPHVILSAAISIDGKIASRSGDSKLSSQIDK-VRLHKLRSKVDAILVGKNTVQRDD 59
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P LT R +P+RIILD + ++SKI++T P II L K
Sbjct: 60 PLLTVRYTK--GKNPIRIILDSQGTIPINSKILQTCDKVPTIIAVSRKISNENLKKLNKF 117
Query: 265 INIIYCDCRDLKKLLTILV---GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
I +L + +++ R + ++LVEGG V FI +++ D I + S +IG
Sbjct: 118 PVEIIMSGENLVNIKSLMTSLSKRKIKTILVEGGGTVNWQFIQNKMFDEIFITISPFIIG 177
Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
+ ++ +K + + L Y
Sbjct: 178 GTDAVTFVQGKGFDKIIKSPKLRLNSIKKLENYLVLHYTK 217
>gi|257082102|ref|ZP_05576463.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
gi|257419759|ref|ZP_05596753.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
gi|257422022|ref|ZP_05599012.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
gi|256990132|gb|EEU77434.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
gi|257161587|gb|EEU91547.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
gi|257163846|gb|EEU93806.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
gi|315157050|gb|EFU01067.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0043]
Length = 173
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRKGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|194015030|ref|ZP_03053647.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
pumilus ATCC 7061]
gi|194014056|gb|EDW23621.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
pumilus ATCC 7061]
Length = 156
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V + T +IVKDG +I G T HAEV A+ +
Sbjct: 3 HEDFLQRAIDLAVEGV-NSGTGGPFGAVIVKDGQIIAEGSNNVTTTNDPTAHAEVTAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 62 ACQTLNTYQLEDCILYTSCEPCPMC 86
>gi|149278271|ref|ZP_01884409.1| putative cytosine/adenosine deaminase [Pedobacter sp. BAL39]
gi|149231037|gb|EDM36418.1| putative cytosine/adenosine deaminase [Pedobacter sp. BAL39]
Length = 157
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D +M AL + + + ++V G ++GRG HAE+QA
Sbjct: 14 AEDEHYMRLALEEANKA--YVAEEVPIGAIVVCKGRIVGRGYNLTEQLNDVTAHAEMQAF 71
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVT+EPC
Sbjct: 72 TAAAQTLGGKYLKDCTIYVTVEPCVMC 98
>gi|52145192|ref|YP_081636.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
cereus E33L]
gi|51978661|gb|AAU20211.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus cereus E33L]
Length = 166
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|78224707|ref|YP_386454.1| tRNA-adenosine deaminase [Geobacter metallireducens GS-15]
gi|78195962|gb|ABB33729.1| tRNA-adenosine deaminase [Geobacter metallireducens GS-15]
Length = 171
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D+ +M ALR + + ++V++G VIGRG HAE+ A+
Sbjct: 11 DDSYWMGKALREAEKAA--ARDEVPIGAVVVRNGAVIGRGHNLRENKQDPSAHAEMIAIR 68
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
+A G YVTLEPC
Sbjct: 69 QAARRLGCWRLTGCVLYVTLEPCLMC 94
>gi|319948957|ref|ZP_08023062.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
gi|319437395|gb|EFV92410.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4]
Length = 288
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 35/288 (12%)
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+TLEPC H+GR+ PC + G+ RVV V DP+ V+ G L + G+ V R + E
Sbjct: 1 MTLEPCDHHGRTGPCTARALAAGVARVVYAVSDPNP-VAAGGADTLRRAGVDVSRGDDDE 59
Query: 134 GK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ L A+L RQ R +T K A S D + A S ITG +S++ H R +
Sbjct: 60 VRAAGDGPLRAWLHRQAHGRPFVTWKYAASLDGRVAAADGSSRWITGPVSRHHAHARRQE 119
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248
DA++VG GT+ ADDP LT RL+ + + + + + +
Sbjct: 120 IDALVVGTGTLTADDPALTARLDDGRPAPRQPLRAVMGLSAVPTGAAVRGDDGRFRHLAT 179
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + + L V +LVEGG +A +F+ + LV
Sbjct: 180 RDPAEALAMLG--------------------------DVCHVLVEGGPRLAGAFLAAGLV 213
Query: 309 DSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353
D + Y + +V+G G + + F G+DV L
Sbjct: 214 DEVDAYIAPLVLGGGRSAVEGAGVATLTDAHGFTVRETTVLGADVHLR 261
>gi|254672230|emb|CBA05187.1| putative hydrolase protein [Neisseria meningitidis alpha275]
Length = 197
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 51 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 106
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 107 QAGSEMQNYRLDGCDIYITLEPCAMC 132
>gi|297587228|ref|ZP_06945873.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
gi|297575209|gb|EFH93928.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516]
Length = 155
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ + D +FM A+ ++ + V C+IVKDG +I + + HAE++
Sbjct: 1 MENNDEKFMMKAIEQAKIAYDMDEV--PVGCVIVKDGEIIAQAYNSVEKDKNATMHAELK 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A E YVTLEPC
Sbjct: 59 AINQATEFIGNFRLDDCIMYVTLEPCVMC 87
>gi|157691996|ref|YP_001486458.1| guanine deaminase [Bacillus pumilus SAFR-032]
gi|157680754|gb|ABV61898.1| guanine deaminase [Bacillus pumilus SAFR-032]
Length = 156
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V + T +IVKDG +I G T HAEV A+ +
Sbjct: 3 HEDFLQRAIDLAVEGV-NSGTGGPFGAVIVKDGQIIAEGSNNVTTTNDPTAHAEVTAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 62 ACQTLNTYQLEDCILYTSCEPCPMC 86
>gi|259907686|ref|YP_002648042.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
gi|224963308|emb|CAX54793.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96]
gi|310764806|gb|ADP09756.1| tRNA-specific adenosine deaminase [Erwinia sp. Ejp617]
Length = 166
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M ALR +R G V ++V DG IG G G HAE+ AL
Sbjct: 7 EYWMRHALRLARRAWDEGEV----PVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALR 62
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+ G+ T YVTLEPC
Sbjct: 63 QGGKVIENYRLLDTTLYVTLEPCVMC 88
>gi|329902676|ref|ZP_08273230.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
IMCC9480]
gi|327548648|gb|EGF33298.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium
IMCC9480]
Length = 161
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59
D+ FM A+ + +G V ++VKDG VI G G HAE+ A
Sbjct: 2 DDSVFMRLAMDQAHNAWALGEV----PVGAVLVKDGQVIATGFNQSIGTHDPTAHAEIMA 57
Query: 60 LEEAGE------EARGATAYVTLEPCSHY 82
L AG G YVTLEPC+
Sbjct: 58 LR-AGASLLGNYRLPGCELYVTLEPCAMC 85
>gi|293194557|ref|ZP_06610019.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus
F0309]
gi|292819677|gb|EFF78695.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus
F0309]
Length = 332
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------TAYGGCPHAEVQALEEA 63
M AL + T P V +IV +G +IGRG G HAE+ AL EA
Sbjct: 1 MGKALFLANRAR-ETGDVP-VGAVIVDENGRIIGRGWNCREANHDPAG--HAEIVALREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 57 GRARGTWRLTGCTLIVTLEPCTMC 80
>gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Bacillus anthracis str. Ames]
gi|47525273|ref|YP_016622.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49183056|ref|YP_026308.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Bacillus anthracis str. Sterne]
gi|49481561|ref|YP_034377.1| cytidine/deoxycytidylate deaminase family protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|65317484|ref|ZP_00390443.1| COG0590: Cytosine/adenosine deaminases [Bacillus anthracis str.
A2012]
gi|118475795|ref|YP_892946.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
gi|165873229|ref|ZP_02217840.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0488]
gi|167635069|ref|ZP_02393386.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0442]
gi|167642053|ref|ZP_02400280.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0193]
gi|170688894|ref|ZP_02880096.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0465]
gi|170707544|ref|ZP_02897997.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0389]
gi|177655687|ref|ZP_02937012.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0174]
gi|190569336|ref|ZP_03022228.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis Tsiankovskii-I]
gi|196036359|ref|ZP_03103756.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus W]
gi|196041943|ref|ZP_03109230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus NVH0597-99]
gi|196047685|ref|ZP_03114889.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus 03BB108]
gi|218901223|ref|YP_002449057.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH820]
gi|225862074|ref|YP_002747452.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus 03BB102]
gi|227812695|ref|YP_002812704.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. CDC 684]
gi|228912760|ref|ZP_04076409.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925275|ref|ZP_04088373.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931524|ref|ZP_04094432.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943828|ref|ZP_04106215.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089154|ref|ZP_04220437.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
gi|229119684|ref|ZP_04248947.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
gi|229182416|ref|ZP_04309669.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
gi|229604522|ref|YP_002864673.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0248]
gi|254686610|ref|ZP_05150469.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. CNEVA-9066]
gi|254724163|ref|ZP_05185948.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A1055]
gi|254737002|ref|ZP_05194707.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Western North America USA6153]
gi|254744200|ref|ZP_05201881.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Kruger B]
gi|254751191|ref|ZP_05203230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Vollum]
gi|254761661|ref|ZP_05213679.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Australia 94]
gi|30253533|gb|AAP24075.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Ames]
gi|47500421|gb|AAT29097.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. 'Ames Ancestor']
gi|49176983|gb|AAT52359.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. Sterne]
gi|49333117|gb|AAT63763.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118415020|gb|ABK83439.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam]
gi|164711027|gb|EDR16593.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0488]
gi|167509987|gb|EDR85406.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0193]
gi|167529543|gb|EDR92293.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0442]
gi|170127540|gb|EDS96414.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0389]
gi|170667118|gb|EDT17879.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0465]
gi|172080027|gb|EDT65127.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0174]
gi|190559558|gb|EDV13551.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis Tsiankovskii-I]
gi|195990989|gb|EDX54960.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus W]
gi|196021470|gb|EDX60173.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus 03BB108]
gi|196027198|gb|EDX65818.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus NVH0597-99]
gi|218537868|gb|ACK90266.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus AH820]
gi|225787894|gb|ACO28111.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus 03BB102]
gi|227005774|gb|ACP15517.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. CDC 684]
gi|228601062|gb|EEK58629.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1]
gi|228663775|gb|EEL19352.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201]
gi|228694177|gb|EEL47857.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42]
gi|228815852|gb|EEM62086.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828142|gb|EEM73868.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834389|gb|EEM79928.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846887|gb|EEM91890.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268930|gb|ACQ50567.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus anthracis str. A0248]
Length = 166
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|323128130|gb|ADX25427.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 175
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EMMAINEANAYEGNWRLLDTTMFVTIEPCVMCS 91
>gi|301093219|ref|XP_002997458.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110714|gb|EEY68766.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 149
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
D FM A+ + S N V C++V+DG+V+ G + G HAE AL +
Sbjct: 6 ESDVAFMRLAVAEAHRSQP--SENAYCVGCVVVRDGLVLSTGFSRELPGNTHAEQVALHK 63
Query: 63 AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
EA+GAT Y T+EPCS + PC Q + G+ RVV+ V +P V +G+Q L +
Sbjct: 64 LNFEAQGATVYTTMEPCSTRVSGNVPCVQSCLRAGVARVVIGVMEPKTFVICKGVQLLQE 123
Query: 122 KGIIV 126
+ V
Sbjct: 124 ARVDV 128
>gi|85059758|ref|YP_455460.1| tRNA-specific adenosine deaminase [Sodalis glossinidius str.
'morsitans']
gi|84780278|dbj|BAE75055.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 169
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M D +M AL + G V ++V +G +IG G G H
Sbjct: 1 MSERCSDEVWMRHALMLAGRAEAEGEV----PVGAVLVLNGAIIGEGWNRSIGHHDPTAH 56
Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
AE+ AL + G++A AT YVTLEPC
Sbjct: 57 AEIMALRQGGQQAGNYRLLKATLYVTLEPCVMC 89
>gi|283131399|dbj|BAI63401.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 175
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 5 SFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
S D FM AL+ + + + C+IVKDG +IGRG A HAE+
Sbjct: 4 SLDEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ EA T +VT+EPC
Sbjct: 62 AINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|325295641|ref|YP_004282155.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325066089|gb|ADY74096.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 155
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D F+ AL+ ++ +G + +IVKD +I R HAE+
Sbjct: 2 ELDHLFLLEALKEAKKAFKLGEV----PIGAIIVKDRKIISRAFNRKEFLQDPTAHAELL 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA G T Y T+EPC
Sbjct: 58 AIKEASRKLNSWRLNGCTLYSTVEPCIMC 86
>gi|83588899|ref|YP_428908.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
gi|83571813|gb|ABC18365.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073]
Length = 150
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
+M AL +R +G + +IV G +I R HAE+ A
Sbjct: 2 DHHFYMGEALDEARKAFDLGEV----PIGAVIVAGGEIIARAGNRRETLADPTAHAEIIA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A GAT YVTLEPC
Sbjct: 58 LRAAARVRGDWRLTGATLYVTLEPCPMC 85
>gi|294496892|ref|YP_003560592.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
gi|294346829|gb|ADE67158.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551]
Length = 156
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D ++M A+ + + +IV++ V+ T HAE+ A++E
Sbjct: 4 DEKYMRLAIDEALKAKDKLEV--PIGAVIVQNDEVVASAYNLRETEQRSVAHAELLAIDE 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + AT YVTLEPC
Sbjct: 62 ACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|295402713|ref|ZP_06812655.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
C56-YS93]
gi|312109168|ref|YP_003987484.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
gi|294975244|gb|EFG50880.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius
C56-YS93]
gi|311214269|gb|ADP72873.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1]
Length = 161
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A+ ++ G + +IV+ G VI R TA HAE+ A+
Sbjct: 4 DEYYMRLAIEEAKQAEQIGEV----PIGAIIVQGGNVIARAHNLRETAQRAIAHAEILAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC+
Sbjct: 60 DEACKKAGSWRLEDATLYVTLEPCAMC 86
>gi|319901083|ref|YP_004160811.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
gi|319416114|gb|ADV43225.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
Length = 159
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ +M AL +R G P V ++V +I R T HAE+QA+
Sbjct: 17 DDSYYMKQALLEARKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 74
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ T YVT+EPC CA I + ++V D
Sbjct: 75 AAASTLGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGKLVFGAVDEKRGYQRYAS 128
Query: 117 QWLSQKGIIVD 127
Q L K I+V
Sbjct: 129 QALHPKTIVVQ 139
>gi|288906283|ref|YP_003431505.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
gallolyticus UCN34]
gi|306832338|ref|ZP_07465492.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325979296|ref|YP_004289012.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288733009|emb|CBI14590.1| putative cytidine/deoxycytidylate deaminase family protein
[Streptococcus gallolyticus UCN34]
gi|304425777|gb|EFM28895.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325179224|emb|CBZ49268.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 168
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM AL+ ++ + + C+IVK+G++IGRG A HAE+ A+++A
Sbjct: 10 EYFMREALKEAQKSL--AKEEIPIGCVIVKNGVIIGRGHNAREERQKAILHAEIMAIDDA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E +T +VT+EPC
Sbjct: 68 NENEGSWRLLDSTLFVTIEPCVMCS 92
>gi|301051758|ref|YP_003789969.1| putative cytidine/deoxycytidylate deaminase family protein
[Bacillus anthracis CI]
gi|300373927|gb|ADK02831.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus cereus biovar anthracis str. CI]
Length = 166
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV +G VI T HAE+ A+
Sbjct: 4 DQDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|238897621|ref|YP_002923300.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465378|gb|ACQ67152.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 168
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 2 PVSSFDA-RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
P S D +M AL + G + ++V + IG G + H
Sbjct: 9 PDSELDHHYWMRHALSLAEQAQASGEV----PIGAVVVVNNQSIGEGWNQSVMCHDPTAH 64
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL +AG AT YVTLEPC
Sbjct: 65 AEIIALRQAGRHQKNYRLVNATLYVTLEPCMMC 97
>gi|86739889|ref|YP_480289.1| bifunctional deaminase-reductase-like protein [Frankia sp. CcI3]
gi|86566751|gb|ABD10560.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3]
Length = 283
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+LT L RGV LLVEGG ++ +F+ + LVD + L + +GE P+ + G
Sbjct: 196 AILTDLARRGVRRLLVEGGTSLHTAFLTAGLVDELHLTVAPFFVGERDAPTFVGPGVFPN 255
Query: 337 N----FMCVRRDYFGSDVCLEYI 355
+ V L Y+
Sbjct: 256 DVHSPLRLAEVRQLDDVVFLRYL 278
>gi|171777570|ref|ZP_02919258.1| hypothetical protein STRINF_00093 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|171283179|gb|EDT48603.1| hypothetical protein STRINF_00093 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 168
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM AL+ ++ + + C+IVK+G +IGRG A HAE+ A+++A
Sbjct: 10 EYFMREALKEAQKSL--AKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E +T +VT+EPC
Sbjct: 68 NENEGSWRLLDSTLFVTIEPCVMCS 92
>gi|71907824|ref|YP_285411.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
gi|71847445|gb|AAZ46941.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB]
Length = 146
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ +R +G V ++V +G ++GRG + G HAE+ AL +A
Sbjct: 1 MREAISLARAAECLGEV----PVGAVVVLNGEIVGRGFNSPIGESDPTAHAEIAALRDAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
G +VTLEPC+
Sbjct: 57 RVLGNYRLPGCELFVTLEPCAMC 79
>gi|315647606|ref|ZP_07900708.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
V453]
gi|315277045|gb|EFU40386.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex
V453]
Length = 159
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+M A+ + +V P ++VK+G VIGRG HAEVQA+
Sbjct: 4 PNHEYWMQIAIEEAHQNVQNVEGGP-FGAIVVKEGKVIGRGRNLVTALNDPTAHAEVQAI 62
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA + +G T Y + EPC
Sbjct: 63 REACLHMEDFQLKGCTIYTSCEPCPMC 89
>gi|149369606|ref|ZP_01889458.1| putative cytosine/adenosine deaminase [unidentified eubacterium
SCB49]
gi|149357033|gb|EDM45588.1| putative cytosine/adenosine deaminase [unidentified eubacterium
SCB49]
Length = 152
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M D FM A + + G + +IV D +I R T H
Sbjct: 4 MIEPFDDTYFMKRAFQEAETAYSQGEI----PIGAVIVADNKIIARAHNLTETLNDVTAH 59
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
AE+QA+ A G+ +G T YVT+EPC CA + I VV D
Sbjct: 60 AEMQAITAAANYLGGKYLKGCTLYVTIEPC------QMCAGALYWSQISNVVYGARDEQR 113
Query: 110 RVSGRG 115
G
Sbjct: 114 GCLEMG 119
>gi|325846128|ref|ZP_08169222.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481721|gb|EGC84756.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 185
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
D +M A+ ++ + C+IVK+G +I R HAE+ A++
Sbjct: 2 DDYFYMKEAINEAKLARLE--EEVPIGCVIVKNGKIIARSHNYTYKGKSALKHAEILAID 59
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + T YVT+EPCS
Sbjct: 60 KASKYVGDFRLEDCTMYVTMEPCSMC 85
>gi|325928669|ref|ZP_08189845.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
gi|325540965|gb|EGD12531.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118]
Length = 171
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL+ + P V L+V G V+G G ++ HAE
Sbjct: 12 PYAAIDEHWMRHALQLAERAERDYDEIP-VGALLVDAQGNVLGEGWNFNIASHDPSAHAE 70
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 71 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 101
>gi|283131444|dbj|BAI63444.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 183
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 9 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTMFVTIEPCVMCS 99
>gi|29376713|ref|NP_815867.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
faecalis V583]
gi|227520261|ref|ZP_03950310.1| nucleoside deaminase [Enterococcus faecalis TX0104]
gi|227555305|ref|ZP_03985352.1| nucleoside deaminase [Enterococcus faecalis HH22]
gi|229549515|ref|ZP_04438240.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200]
gi|256617220|ref|ZP_05474066.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
4200]
gi|256763008|ref|ZP_05503588.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
gi|256853656|ref|ZP_05559021.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8]
gi|256956593|ref|ZP_05560764.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
gi|256963481|ref|ZP_05567652.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis
HIP11704]
gi|257079519|ref|ZP_05573880.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
gi|257084716|ref|ZP_05579077.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
gi|257087338|ref|ZP_05581699.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
gi|257090472|ref|ZP_05584833.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
gi|294779058|ref|ZP_06744471.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis PC1.1]
gi|307270381|ref|ZP_07551686.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX4248]
gi|307272388|ref|ZP_07553644.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0855]
gi|307277264|ref|ZP_07558368.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX2134]
gi|307287809|ref|ZP_07567847.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0109]
gi|307290876|ref|ZP_07570767.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0411]
gi|312901462|ref|ZP_07760737.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0470]
gi|312903780|ref|ZP_07762953.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0635]
gi|312953348|ref|ZP_07772190.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0102]
gi|29344177|gb|AAO81937.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus
faecalis V583]
gi|227072340|gb|EEI10303.1| nucleoside deaminase [Enterococcus faecalis TX0104]
gi|227175516|gb|EEI56488.1| nucleoside deaminase [Enterococcus faecalis HH22]
gi|229305333|gb|EEN71329.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200]
gi|256596747|gb|EEU15923.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
4200]
gi|256684259|gb|EEU23954.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
gi|256710599|gb|EEU25642.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8]
gi|256947089|gb|EEU63721.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
gi|256953977|gb|EEU70609.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis
HIP11704]
gi|256987549|gb|EEU74851.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
gi|256992746|gb|EEU80048.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
gi|256995368|gb|EEU82670.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
gi|256999284|gb|EEU85804.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
gi|294453888|gb|EFG22277.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis PC1.1]
gi|306498076|gb|EFM67602.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0411]
gi|306501197|gb|EFM70502.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0109]
gi|306506194|gb|EFM75360.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX2134]
gi|306510942|gb|EFM79956.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0855]
gi|306513289|gb|EFM81916.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX4248]
gi|310628736|gb|EFQ12019.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0102]
gi|310632854|gb|EFQ16137.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0635]
gi|311291451|gb|EFQ70007.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0470]
gi|315025888|gb|EFT37820.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX2137]
gi|315028203|gb|EFT40135.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX4000]
gi|315035707|gb|EFT47639.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0027]
gi|315149190|gb|EFT93206.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0012]
gi|315154468|gb|EFT98484.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0031]
gi|315157427|gb|EFU01444.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0312]
gi|315161835|gb|EFU05852.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0645]
gi|315164307|gb|EFU08324.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX1302]
gi|315166488|gb|EFU10505.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX1341]
gi|315171494|gb|EFU15511.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX1342]
gi|315575193|gb|EFU87384.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0309B]
gi|315578180|gb|EFU90371.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0630]
gi|315582620|gb|EFU94811.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0309A]
gi|323481270|gb|ADX80709.1| cytidine and deoxycytidylate deaminase family protein
[Enterococcus faecalis 62]
gi|327535599|gb|AEA94433.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis OG1RF]
Length = 173
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|229545278|ref|ZP_04434003.1| nucleoside deaminase [Enterococcus faecalis TX1322]
gi|229309628|gb|EEN75615.1| nucleoside deaminase [Enterococcus faecalis TX1322]
Length = 173
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|283131386|dbj|BAI63389.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 183
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 5 SFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
S D FM AL+ + + + C+IVKDG +IGRG A HAE+
Sbjct: 12 SLDEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 69
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ EA T +VT+EPC
Sbjct: 70 AINEANAHEGNWRLLDTTLFVTIEPCVMCS 99
>gi|225849713|ref|YP_002729947.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
gi|225645628|gb|ACO03814.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1]
Length = 154
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D +F+ A + P + +IVKDG +IG+G HAE+ A+
Sbjct: 2 SEDIKFLDIAYEEALKA-YEKDEVP-IGAVIVKDGEIIGKGHNQRIEKNNALYHAEIVAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EEA G T YVT+EPC
Sbjct: 60 EEACRNTGSWRLDGCTLYVTVEPCVMC 86
>gi|314932786|ref|ZP_07840155.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
caprae C87]
gi|313654467|gb|EFS18220.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
caprae C87]
Length = 168
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
D +M A++ ++ +G + +IVK+ VI HAE A+
Sbjct: 4 DKDYMRLAIKEAQKAQALGEV----PIGAVIVKNDQVIAHAHNLRESLQLPTAHAEHIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
E A + T YVTLEPC + ++
Sbjct: 60 ERASKVVGSWRLEECTLYVTLEPCVMCAGAIVMSR 94
>gi|325108107|ref|YP_004269175.1| tRNA-adenosine deaminase [Planctomyces brasiliensis DSM 5305]
gi|324968375|gb|ADY59153.1| tRNA-adenosine deaminase [Planctomyces brasiliensis DSM 5305]
Length = 162
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ +M AL + V +IV DG VI HAE+ AL
Sbjct: 10 ALHEEYMRMALDEAVAAFDE--KEVPVGAIIVHDGHVIAAAHNQRETLNDPTAHAEMIAL 67
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
+A T YVTLEPC
Sbjct: 68 TQAATALESWRLEDCTLYVTLEPCPMC 94
>gi|223939608|ref|ZP_03631483.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
gi|223891766|gb|EEF58252.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
Length = 168
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM ALR + + +IV++G +I R HAE+ A+ +
Sbjct: 12 DNYFMGEALRQAVKAYDR--EEVPIGAVIVREGRIIARAFNQVETLKDATAHAEMLAITQ 69
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A T YVT EPC
Sbjct: 70 AEAAVGDWRLNECTLYVTKEPCPMC 94
>gi|218895158|ref|YP_002443569.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus G9842]
gi|218541226|gb|ACK93620.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Bacillus cereus G9842]
Length = 166
Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + + +IV DG VI T HAE+ A+
Sbjct: 4 DRDIYFMQLAIEEAKKAEEMQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|167766023|ref|ZP_02438076.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
gi|167712103|gb|EDS22682.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1]
Length = 161
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ + ++M A++ ++ + + C+IV+D +I R HAE+ A+
Sbjct: 2 TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + T Y+TLEPC
Sbjct: 60 QKASKKVNDWRLEDCTMYITLEPCQMC 86
>gi|307544260|ref|YP_003896739.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
gi|307216284|emb|CBV41554.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581]
Length = 155
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
D +M A+ +R G V ++V + G ++G G A HAE++A
Sbjct: 4 DEYYMHRAMDQARRAEAAGEV----PVGAVVVDRAGEIVGSGFNAPVSDHDPSAHAEIRA 59
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +AG G T +VTLEPC
Sbjct: 60 LRDAGTRLGNYRLDGCTLFVTLEPCLMC 87
>gi|163749537|ref|ZP_02156784.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
benthica KT99]
gi|161330647|gb|EDQ01584.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
benthica KT99]
Length = 189
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D FMS A+ +R G V +++KDG ++ G G HAE+Q
Sbjct: 20 ALDKHFMSMAMEMARKAEAVGEV----PVGAVLIKDGELVSAGFNYCIGLHDPSAHAEMQ 75
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
L +AG+ T YVTLEPC+
Sbjct: 76 CLRQAGKVIENYRLLNTTLYVTLEPCAMC 104
>gi|256823046|ref|YP_003147009.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
gi|256796585|gb|ACV27241.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069]
Length = 159
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M + FD M A + G V ++ KDG + G
Sbjct: 1 MTDFTDFDQHCMQRAFDLASIAEEKGEV----PVGAVLAKDGEIKTEGFNQPIFNHDPTA 56
Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
HAE+ L AG++ T YVTLEPC+
Sbjct: 57 HAEMVVLRAAGQKLDNYRLVDTTLYVTLEPCAMC 90
>gi|209558752|ref|YP_002285224.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
gi|209539953|gb|ACI60529.1| Cytosine deaminase [Streptococcus pyogenes NZ131]
Length = 171
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|317499420|ref|ZP_07957687.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lachnospiraceae bacterium 5_1_63FAA]
gi|316893292|gb|EFV15507.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 161
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ + ++M A++ ++ + + C+IV+D +I R HAE+ A+
Sbjct: 2 TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + T Y+TLEPC
Sbjct: 60 QKASKKVNDWRLEDCTMYITLEPCQMC 86
>gi|21228824|ref|NP_634746.1| hypothetical protein MM_2722 [Methanosarcina mazei Go1]
gi|20907345|gb|AAM32418.1| hypothetical protein MM_2722 [Methanosarcina mazei Go1]
Length = 161
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 2 PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
+S D + A+ S + G +IVK+G ++
Sbjct: 4 SMSEKDLLLIRRAIELSLESVKRGGG------PFGAVIVKNGKIVSESYNQVTLHNDPTA 57
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAE+ A+ EA + G + Y++ EPC
Sbjct: 58 HAEIGAIREAARKLNTFDLSGCSIYISCEPCPMC 91
>gi|262196785|ref|YP_003267994.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
ochraceum DSM 14365]
gi|262080132|gb|ACY16101.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium
ochraceum DSM 14365]
Length = 319
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 5/206 (2%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ +A S D I A S I+G H +RA DA+LVG TV+ DDP+LTC
Sbjct: 112 PRVIAHLAQSLDGRIATACGTSQWISGNQDLVHNHRMRALCDAVLVGAETVIHDDPQLTC 171
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R P R++LDP ++S + +I + +AP +++ + A +
Sbjct: 172 REVE--GAHPTRVVLDPRGRVSAERRIFQDR-VAPTVVIGNQEGEHALPAHVTRLQVGTP 228
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+L L G+ L VEGG +F+ + L+D + + + ++IG G L
Sbjct: 229 GARIAPGDILDALAVHGIHRLFVEGGGLTVSAFLQAGLLDRLQITVAPMIIGSGRASISL 288
Query: 330 EEGYLEKNFMCVRRDY--FGSDVCLE 353
+ ++ + F +DV E
Sbjct: 289 PDIDSLEHALRPEVRRFVFDTDVMFE 314
>gi|157376253|ref|YP_001474853.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
sediminis HAW-EB3]
gi|157318627|gb|ABV37725.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
sediminis HAW-EB3]
Length = 177
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PH 54
M D FM+ A+ + G V ++VKD V+ G G H
Sbjct: 1 MTQLDRDIHFMALAMLQAAEAEARGEV----PVGAVLVKDDKVVAVGSNDCIGQHDPSAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+Q L EAG T YVTLEPC+
Sbjct: 57 AEMQCLREAGRLVENYRLLDTTLYVTLEPCAMC 89
>gi|163938030|ref|YP_001642914.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis
KBAB4]
gi|163860227|gb|ABY41286.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis
KBAB4]
Length = 164
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV DG VI T HAE+ A+
Sbjct: 2 ERDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|127512231|ref|YP_001093428.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
gi|126637526|gb|ABO23169.1| tRNA-adenosine deaminase [Shewanella loihica PV-4]
Length = 178
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V L+VKD VI G + HAE++ +
Sbjct: 18 DEAYMRQAMALAAQAELRGEV----PVGALLVKDDSVIATGYNLSICRHDASAHAEMECI 73
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ T YVTLEPC+
Sbjct: 74 RAAGQVMENYRLLDTTLYVTLEPCAMC 100
>gi|299542082|ref|ZP_07052398.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
gi|298725397|gb|EFI66045.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1]
Length = 171
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M + D FM AL ++ +G + ++V +G +I R T H
Sbjct: 1 MDIFDADRLFMKQALEEAQQAALLGEV----PIGAVLVYEGKIIARAHNLRETTQNATTH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ ++EA + T YVTLEPC
Sbjct: 57 AELLVIQEACKKIGSWRLEDTTLYVTLEPCPMC 89
>gi|154150347|ref|YP_001403965.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Methanoregula boonei 6A8]
gi|153998899|gb|ABS55322.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanoregula boonei 6A8]
Length = 226
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 14/225 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R + + +A+S D + V I+G +V L+A DA+ VGIGTVLADDP L
Sbjct: 1 MRPRVIVNVAMSADGKLSTRERRQVKISGNEDFARVDRLKAGCDAVAVGIGTVLADDPSL 60
Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
T R + P+R+++D + D+ I+ VI V+E DP A
Sbjct: 61 TVKSPDLRAERQREGRPEHPVRVVIDGRARTPPDASILVKGDGLRVIAVSERADPAKVEA 120
Query: 260 -FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
K + D DL ++L L G+ SL+VEGG + FI + L D I Y I
Sbjct: 121 LRAKAAVITAGKDEVDLSRVLDELGQMGIRSLMVEGGGTLIAGFIRAGLADEIYTYIGSI 180
Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358
VIG P+ + G + + V L ++ K
Sbjct: 181 VIGGKDAPTLADGGGWIRESDFARLVLADVTRIDDGVLLHWMVKR 225
>gi|11499589|ref|NP_070831.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
4304]
gi|6225946|sp|O28272|RIB7_ARCFU RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
reductase; AltName: Full=HTP reductase
gi|2648530|gb|AAB89247.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM
4304]
Length = 219
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 8/209 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE- 206
R ++ + +A S D I + I+ V LRA+SDAI+VGIGTVLADDP
Sbjct: 1 MRPYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRL 60
Query: 207 -------LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
R +E +P+R+++D ++ L ++I+ V + + +
Sbjct: 61 TVKSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDEARTLVAVSRIAPEEKVREV 120
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+ + + + +L LL L +GV L+VEGG + S I+ LVD I +Y I
Sbjct: 121 KKVAEVAVFGEERVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPIF 180
Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
IG P+ + K + + G
Sbjct: 181 IGGRDSPTVCDGESFLKKCRIEKIERIGE 209
>gi|332707760|ref|ZP_08427787.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
gi|332353463|gb|EGJ32976.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L]
Length = 163
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQAL 60
++M+ A+ ++ G P V +IV + G +I G HAE+ AL
Sbjct: 13 IHRKWMTVAIEIAQKA-GEAGEVP-VGAVIVDNEGKLIATGENRRERDKDPTAHAEILAL 70
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
AG++ T YVTLEPC
Sbjct: 71 RAAGQQLQSWHLNHCTLYVTLEPCPMC 97
>gi|50913560|ref|YP_059532.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10394]
gi|71902843|ref|YP_279646.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS6180]
gi|94987813|ref|YP_595914.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS9429]
gi|94989691|ref|YP_597791.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10270]
gi|94991689|ref|YP_599788.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS2096]
gi|94993570|ref|YP_601668.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10750]
gi|306828137|ref|ZP_07461400.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
10782]
gi|50902634|gb|AAT86349.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10394]
gi|71801938|gb|AAX71291.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS6180]
gi|94541321|gb|ABF31370.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS9429]
gi|94543199|gb|ABF33247.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10270]
gi|94545197|gb|ABF35244.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS2096]
gi|94547078|gb|ABF37124.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS10750]
gi|304429674|gb|EFM32720.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC
10782]
Length = 179
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 9 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 99
>gi|17554608|ref|NP_498663.1| hypothetical protein R13A5.10 [Caenorhabditis elegans]
gi|15144367|gb|AAK84461.1|AC006679_2 Hypothetical protein R13A5.10 [Caenorhabditis elegans]
Length = 153
Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM A+ ++ + +IVKDG VIG G HAEV A+
Sbjct: 2 EFMKLAIEEAKKGM-EKGDGGPFGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIRNTC 60
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 61 KNVDNFDLSGCQLYTSCYPCPMC 83
>gi|332883068|gb|EGK03352.1| hypothetical protein HMPREF9456_01989 [Dysgonomonas mossii DSM
22836]
Length = 148
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M AL +R G + ++V G +I RG T HAE+QA+
Sbjct: 8 DDYYMRQALNEARQAFDKGEV----PIGAVVVCKGRIIARGHNLTETLTDVTAHAEMQAI 63
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ YVT+EPC
Sbjct: 64 TAAANVLGGKYLTDCILYVTIEPCPMC 90
>gi|212637865|ref|YP_002314385.1| cytosine/adenosine deaminase [Anoxybacillus flavithermus WK1]
gi|212559345|gb|ACJ32400.1| Cytosine/adenosine deaminase [Anoxybacillus flavithermus WK1]
Length = 177
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
D +M A+ ++ G + +IV + VI R HAE+
Sbjct: 17 KNDEYYMHLAIEEAKKAEKIGEV----PIGAVIVYNDQVIARAHNLRERDQRSIAHAELL 72
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA + AT YVTLEPC+
Sbjct: 73 AIDEACKKLGTWRLEQATLYVTLEPCAMC 101
>gi|306834459|ref|ZP_07467572.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC
700338]
gi|304423261|gb|EFM26414.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC
700338]
Length = 168
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM AL+ ++ + + C+IVK+G +IGRG A HAE+ A+++A
Sbjct: 10 EYFMREALKEAQKSL--AKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E +T +VT+EPC
Sbjct: 68 NENEGNWRLLDSTLFVTIEPCVMCS 92
>gi|288818013|ref|YP_003432360.1| tRNA-specific adenosine deaminase [Hydrogenobacter thermophilus
TK-6]
gi|288787412|dbj|BAI69159.1| tRNA-specific adenosine deaminase [Hydrogenobacter thermophilus
TK-6]
gi|308751614|gb|ADO45097.1| CMP/dCMP deaminase zinc-binding protein [Hydrogenobacter
thermophilus TK-6]
Length = 149
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
+F+ L +R G T V C++VKDG VI + HAE+ AL
Sbjct: 2 EKFIELCLNLARRAYERGET----PVGCVVVKDGKVIAKAHNRVEELKDPTAHAEMLALR 57
Query: 62 EA-----GEEARGATAYVTLEPCSHYGR 84
EA G+ G YV+LEPC
Sbjct: 58 EASESMGGKYLYGCEIYVSLEPCVMCTY 85
>gi|320527136|ref|ZP_08028323.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Solobacterium moorei F0204]
gi|320132464|gb|EFW25007.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Solobacterium moorei F0204]
Length = 164
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+M AL +R + V C+IV DG VI RG HAE+ A+
Sbjct: 2 KTHEEYMELALEEARKAEEIDEV--PVGCVIVCDGEVISRGHNLKEQLNQAYAHAEMMAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A E YVTLEPC
Sbjct: 60 QKAAEVKGNWCLNDCDLYVTLEPCMMC 86
>gi|326575668|gb|EGE25591.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis CO72]
Length = 181
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
S D M+ AL ++ G V ++V +G ++G G T HAE+
Sbjct: 22 SMHDVEMMNRALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEI 77
Query: 58 QALEEAGEEA------RGATAYVTLEPCSHY 82
A+ A E +G YVTLEPC+
Sbjct: 78 VAVRRACETLNNYRLPKGCILYVTLEPCTMC 108
>gi|331270688|ref|YP_004397180.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
BKT015925]
gi|329127238|gb|AEB77183.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
BKT015925]
Length = 147
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+ FM AL+ + V +IVK+G VI T HAE+ A++
Sbjct: 1 MEEEFMKLALKEAEIAKNK--EEVPVGAVIVKNGKVIASAHNLRETLKDPTAHAEILAIK 58
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+A YVTLEPC
Sbjct: 59 KACGILGNWRLSECEMYVTLEPCPMC 84
>gi|293552936|ref|ZP_06673591.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039]
gi|291602912|gb|EFF33109.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039]
Length = 171
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M ++ D ++M AL ++ L + ++V DG V+GRG T
Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE+ A++EA E A +VTLEPC
Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPCPMCS 94
>gi|229015424|ref|ZP_04172427.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
gi|229021629|ref|ZP_04178217.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
gi|228739675|gb|EEL90083.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272]
gi|228745866|gb|EEL95865.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273]
Length = 164
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + +IV D VI T HAE+ A+
Sbjct: 2 DRDIYFMQLAIEEAKKA--EAIQEVPIGAVIVLDDEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLEDATLYVTLEPCPMC 86
>gi|16804756|ref|NP_466241.1| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e]
gi|224502871|ref|ZP_03671178.1| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL
R2-561]
gi|255029049|ref|ZP_05301000.1| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28]
gi|16412219|emb|CAD00932.1| lmo2719 [Listeria monocytogenes EGD-e]
Length = 156
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|118576931|ref|YP_876674.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
gi|118195452|gb|ABK78370.1| riboflavin specific deaminase [Cenarchaeum symbiosum A]
Length = 217
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+P+RII+DP +L +S+I +TA P I+ P + + D
Sbjct: 64 NPVRIIIDPLGRLPPESQIARTAGRIPTIVACTGRIPPRNRRRLEGLSVEVLEAGTDEMD 123
Query: 278 LL---TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
LL L RG+ ++L+EGGA FI LVD +I+ + +VIG G +
Sbjct: 124 LLVLLRALYRRGLRTILLEGGARTNWGFIERGLVDEMIITIAPVVIGGTGSVPLVGGRGF 183
Query: 335 E----KNFMCVRRDYFGSDVCLEYIGK 357
+ F G +V L Y+ +
Sbjct: 184 AGVHRRAFRLKEALRQGDEVVLHYVKR 210
>gi|153207852|ref|ZP_01946429.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
Q177']
gi|154706920|ref|YP_001424041.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
5J108-111]
gi|161830554|ref|YP_001596549.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
gi|165918843|ref|ZP_02218929.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
gi|212212896|ref|YP_002303832.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
gi|212219141|ref|YP_002305928.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
gi|215919009|ref|NP_819652.2| zinc-binding domain-containing protein [Coxiella burnetii RSA
493]
gi|120576278|gb|EAX32902.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat
Q177']
gi|154356206|gb|ABS77668.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway
5J108-111]
gi|161762421|gb|ABX78063.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331]
gi|165917475|gb|EDR36079.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334]
gi|206583894|gb|AAO90166.2| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 493]
gi|212011306|gb|ACJ18687.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212]
gi|212013403|gb|ACJ20783.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154]
Length = 148
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D FM AL ++ + N + ++VK+ ++G G HAE+ AL
Sbjct: 3 DELFMHEALALAKKA----NENNEVPIGAVLVKENEIVGHGFNEPITLNDPTAHAEILAL 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + T YVTLEPC+
Sbjct: 59 RNAAKRVGNYRLVDTTLYVTLEPCAMC 85
>gi|291302009|ref|YP_003513287.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
DSM 44728]
gi|290571229|gb|ADD44194.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis
DSM 44728]
Length = 419
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
D ++ A+ + + T SV +IV DG V+ G + HAE AL + +
Sbjct: 3 DEHWLRQAIALAAK-CPPSDTAFSVGAVIVADGRVLATGYSRETDPHDHAEEAALSKLDQ 61
Query: 66 EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ GAT Y +LEPC R CA+ II + RVV +PD V +GL+ L++ +
Sbjct: 62 DLSGATVYSSLEPCGQRASRPVSCAELIIAARVPRVVYAWREPDTFVQPKGLRLLAEARV 121
Query: 125 I 125
Sbjct: 122 E 122
>gi|92112967|ref|YP_572895.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
gi|91796057|gb|ABE58196.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043]
Length = 151
Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
D +M AL + + G V ++V +DG ++G G A HAEV+A
Sbjct: 4 DTFYMHRALDQAHRALEAGEV----PVGAVVVARDGDIVGTGFNAPVSSHDPSAHAEVRA 59
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A E G T +VTLEPC
Sbjct: 60 LRDAAERLGNYRLEGCTLFVTLEPCLMC 87
>gi|313900948|ref|ZP_07834438.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
gi|312954368|gb|EFR36046.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
Length = 151
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+M AALR + + + C+IVKD +I RG T HAE+ A+++A
Sbjct: 3 EEYMRAALREAEKAKKIDEV--PIGCVIVKDDKIIARGHNLRETKQQSINHAEIIAIQKA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ YVTLEPC
Sbjct: 61 CKKVGSWRLEDCDLYVTLEPCCMC 84
>gi|158335091|ref|YP_001516263.1| riboflavin biosynthesis protein RibD domain-containing protein
[Acaryochloris marina MBIC11017]
gi|158305332|gb|ABW26949.1| riboflavin biosynthesis protein RibD C-terminus domain protein
[Acaryochloris marina MBIC11017]
Length = 230
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 13/222 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R T+ +A+S D I A + A +D IL G T+ A + +
Sbjct: 7 QRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAM 66
Query: 208 TCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
L R I+ L + K + A+ ++ +
Sbjct: 67 RVVTQDLINARLERGQPEQPAQIVCTRSGDLDPNLKFFQQAVPHWLVTTQAGGQSWQGTS 126
Query: 260 FRKKNINIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ + L + G+ + V GG + + + L+D + L +
Sbjct: 127 HFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVLGGGQIVAALLAEDLIDELHLTVCPL 186
Query: 319 VIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIG 356
+IG P+P+ + +++ L Y
Sbjct: 187 LIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRR 228
>gi|219682367|ref|YP_002468751.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219622100|gb|ACL30256.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|311086188|gb|ADP66270.1| riboflavin reductase [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086764|gb|ADP66845.1| riboflavin reductase [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
gi|311087352|gb|ADP67432.1| riboflavin reductase [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
gi|311087852|gb|ADP67931.1| riboflavin reductase [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 214
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 6/152 (3%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
P+R+I+D ++ IIKT + ++ D + + I +
Sbjct: 57 FPNKIFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHN 114
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
++ LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P +
Sbjct: 115 KKINIFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMI 174
Query: 331 EGYLE----KNFMCVRRDYFGSDVCLEYIGKN 358
L+ F G D+ L K
Sbjct: 175 YEKLKISNSLQFKFKNICQIGPDIRLILSPKK 206
>gi|333000872|gb|EGK20443.1| tRNA-specific adenosine deaminase [Shigella flexneri K-218]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
M AL ++ V ++V + VIG G G HAE+ AL + G
Sbjct: 1 MRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
AT YVTLEPC
Sbjct: 59 MQNYRLIDATLYVTLEPCVMC 79
>gi|187478486|ref|YP_786510.1| zinc-binding cytidine/deoxycytidylate deaminase [Bordetella avium
197N]
gi|115423072|emb|CAJ49603.1| putative zinc-binding cytidine/deoxycytidylate deaminase
[Bordetella avium 197N]
Length = 157
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
D +M AL +R G V ++V +G V+G G HAEV
Sbjct: 3 DADEIYMHMALEQARLAYDQGEV----PVGAVVVDGEGRVLGAGYNRTILDSDPTAHAEV 58
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
AL A G T YVTLEPC
Sbjct: 59 MALRAASRHLANYRLPGLTLYVTLEPCVMC 88
>gi|166367634|ref|YP_001659907.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa
NIES-843]
gi|166090007|dbj|BAG04715.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa
NIES-843]
Length = 226
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R H T+ +A+S D I A + K ++ ++ DA L G T+ A
Sbjct: 1 MNRPHTTVILAMSADGKIADAYQSAARFASATDKMRLEQHLSRMDAALFGANTLRAYHTS 60
Query: 207 LTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L R + R I+ +L K + +I E
Sbjct: 61 LPIRHADFLAYRQQRGLSPQPIQIVCSHSGQLDPRMKFFQQPFPRWLITAAE-----KVA 115
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
A+ + + + C D K + + G+ L + GG + S + L+D I L +
Sbjct: 116 AWENRGLFELVLVCGDWKAIFSQFTTLGIKKLAILGGGELIASLLAEDLIDEIHLTICPL 175
Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
++G +PL + + + +++ L Y
Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215
>gi|139473043|ref|YP_001127758.1| deaminase [Streptococcus pyogenes str. Manfredo]
gi|134271289|emb|CAM29505.1| putative deaminase [Streptococcus pyogenes str. Manfredo]
Length = 157
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S + FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EIMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|332754174|gb|EGJ84543.1| tRNA-specific adenosine deaminase [Shigella flexneri K-671]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
M AL ++ V ++V + VIG G G HAE+ AL + G
Sbjct: 1 MRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
AT YVTLEPC
Sbjct: 59 MQNYRLIDATLYVTLEPCVMC 79
>gi|222153804|ref|YP_002562981.1| deaminase [Streptococcus uberis 0140J]
gi|222114617|emb|CAR43628.1| putative deaminase [Streptococcus uberis 0140J]
Length = 167
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
M S + FM AL+ ++ + + C+IVK+G +IGRG A HA
Sbjct: 1 MSYSQEEKEFFMREALKEAKKSLDKGEI--PIGCVIVKEGRIIGRGHNAREERNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EIMAINEANATVGNWRLLDTTLFVTIEPCVMCS 91
>gi|152978402|ref|YP_001344031.1| CMP/dCMP deaminase zinc-binding [Actinobacillus succinogenes
130Z]
gi|150840125|gb|ABR74096.1| CMP/dCMP deaminase zinc-binding [Actinobacillus succinogenes
130Z]
Length = 182
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56
++ D FM+ AL + G V ++V + +IG G HAE
Sbjct: 10 TTLDEFFMNHALALADKARMLGEI----PVGAVLVDEHNQIIGEGWNLSIIHSDPTAHAE 65
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL ++ + T YVTLEPC+
Sbjct: 66 IVALRRGAQKIQNYRLLNCTLYVTLEPCTMC 96
>gi|289812274|ref|ZP_06542903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 83
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYL 334
+ L + + S+ VE G +A + + + LVD +I+Y + ++G LE+
Sbjct: 1 MMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLAD 60
Query: 335 EKNFMCVRRDYFGSDVCLEYI 355
F + G DVCL +
Sbjct: 61 APQFTFSEIRHVGPDVCLHMV 81
>gi|260437836|ref|ZP_05791652.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM
2876]
gi|292809861|gb|EFF69066.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM
2876]
Length = 157
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM A+R ++ L + C+IV DG +I RG HAE+ A++ A
Sbjct: 5 EGFMKEAIRQAKKAEKLNEV--PIGCVIVYDGKIIARGYNRRNTDKSTLAHAEIIAIKRA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 63 SKVIKDWRLEDCTLYVTLEPCQMC 86
>gi|47095526|ref|ZP_00233135.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes str. 1/2a F6854]
gi|254899824|ref|ZP_05259748.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes J0161]
gi|254912971|ref|ZP_05262983.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes J2818]
gi|254937352|ref|ZP_05269049.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
gi|255025258|ref|ZP_05297244.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes FSL J2-003]
gi|284800395|ref|YP_003412260.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
gi|284993581|ref|YP_003415349.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
gi|47016136|gb|EAL07060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes str. 1/2a F6854]
gi|258609958|gb|EEW22566.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900]
gi|284055957|gb|ADB66898.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578]
gi|284059048|gb|ADB69987.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923]
gi|293590973|gb|EFF99307.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes J2818]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|319655047|ref|ZP_08009117.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
gi|317393271|gb|EFV74039.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2]
Length = 178
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEV 57
+ D +M A++ ++ GL + +IV +G +I R HAE+
Sbjct: 5 SFTE-DELYMQEAIKEAKLAEGL--EEVPIGAVIVLEGEIIARAHNLREVNQTAIAHAEL 61
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYG 83
A+++A + A YVTLEPC
Sbjct: 62 LAIDQACKNLGTWRLENAVLYVTLEPCPMCS 92
>gi|269123684|ref|YP_003306261.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
moniliformis DSM 12112]
gi|268315010|gb|ACZ01384.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus
moniliformis DSM 12112]
Length = 159
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 34/110 (30%)
Query: 1 MPVS---SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M + S+D FM A + V IVKD ++G G G P
Sbjct: 1 MKRTTFLSWDEYFMGIAFLSANRSK---DPVTQVGACIVKDSKIVGIGY---NGFPIGSS 54
Query: 54 ---------------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G+T YVT PC+
Sbjct: 55 DDEVPWEKDGDFLNTKYAYVVHAELNAILNSNRDLKGSTIYVTHFPCNEC 104
>gi|108758559|ref|YP_630178.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Myxococcus xanthus DK 1622]
gi|108462439|gb|ABF87624.1| cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Myxococcus xanthus DK 1622]
Length = 154
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R +G V + V +G V+G G HAE+ A+
Sbjct: 3 DEAFMQQALSLAREAAELGEV----PVGAVAVLNGEVVGAGFNRREVDRNPLAHAEMLAM 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ A G T YVTLEPC+
Sbjct: 59 DAAARKIGAWRLSGVTLYVTLEPCAMC 85
>gi|268575234|ref|XP_002642596.1| Hypothetical protein CBG09150 [Caenorhabditis briggsae]
gi|187032061|emb|CAP28830.1| hypothetical protein CBG_09150 [Caenorhabditis briggsae AF16]
Length = 153
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM A+ ++ + + +IVKDG VIG G HAEV A+
Sbjct: 2 EFMKLAIEEAKKGM-VAGDGGPFGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIRNTC 60
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 61 KNVDSFDLSGCQLYTSCYPCPMC 83
>gi|71909993|ref|YP_281543.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS5005]
gi|60416281|sp|P68999|TADA_STRP1 RecName: Full=tRNA-specific adenosine deaminase
gi|71852775|gb|AAZ50798.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes
MGAS5005]
Length = 171
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|254473540|ref|ZP_05086936.1| cytosine deaminase [Pseudovibrio sp. JE062]
gi|211957252|gb|EEA92456.1| cytosine deaminase [Pseudovibrio sp. JE062]
Length = 148
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G + C++VKDG V+ HAEV A+ EA
Sbjct: 5 FMDMALNEARAAEARGEV----PIGCVVVKDGKVLSAAGNRTLELNDPTAHAEVLAIREA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G+ G YVTLEPC
Sbjct: 61 GKQLNSQRLEGCDLYVTLEPCPMC 84
>gi|254830845|ref|ZP_05235500.1| hypothetical protein Lmon1_05774 [Listeria monocytogenes 10403S]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|21909689|ref|NP_663957.1| putative cytidine/deoxycytidylate deaminase family protein
[Streptococcus pyogenes MGAS315]
gi|56807966|ref|ZP_00365780.1| COG0590: Cytosine/adenosine deaminases [Streptococcus pyogenes
M49 591]
gi|73921034|sp|Q8K8Q9|TADA_STRP3 RecName: Full=tRNA-specific adenosine deaminase
gi|73921083|sp|Q5XE14|TADA_STRP6 RecName: Full=tRNA-specific adenosine deaminase
gi|21903872|gb|AAM78760.1| putative cytidine/deoxycytidylate deaminase family protein
[Streptococcus pyogenes MGAS315]
Length = 171
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S + FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|312131614|ref|YP_003998954.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella
byssophila DSM 17132]
gi|311908160|gb|ADQ18601.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella
byssophila DSM 17132]
Length = 153
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGI-VIGRGVTA----YGGCPHAEVQA 59
FM AL + G V L+V DG +IG+G HAE+ A
Sbjct: 11 HEYFMQKALTLAEEAFDQGEI----PVGALVVADGKTIIGKGYNQTEKLTDVTAHAEILA 66
Query: 60 LEEAG-----EEARGATAYVTLEPCSHY 82
L A + + T YVTLEPC
Sbjct: 67 LSAASQYLGAKYLKDCTLYVTLEPCMMC 94
>gi|330944974|gb|EGH46766.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 138
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 3/132 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+L D+ + V + + DL++L+ L RGV
Sbjct: 1 LRLPFDAPFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGV 60
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
+LVE G +A +F LVD L+ + +G P PL + V
Sbjct: 61 NEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMR 120
Query: 345 YFGSDVCLEYIG 356
G+D + +
Sbjct: 121 AVGNDWRVIALP 132
>gi|154173746|ref|YP_001408781.1| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
gi|153793001|gb|EAT99582.2| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92]
Length = 376
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 78/204 (38%), Gaps = 51/204 (25%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59
D +M AL + LT NP+V C+I ++G ++ GC HAE A
Sbjct: 3 DEFYMQLALNKAWEFQILTYPNPAVGCVITDRNGKILSCEAHKKAGCLHAEPMAVFFALC 62
Query: 60 ---------------------------LEEA---------------GEEARGATAYVTLE 77
L+ A +GA AYVTLE
Sbjct: 63 ALSGEFLAKFLDAYGAKFSQNFSGLDELKSAELEPNFTYEFILAYHANLLKGAKAYVTLE 122
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
PCSH+GR+PPCA+ + VV+ D +++ G + L G+ V + + +
Sbjct: 123 PCSHHGRTPPCAELLKRLNFGEVVIGARDE-NKIASGGAEILKNSGVRVKFDVLKDKALE 181
Query: 138 LHAYLTRQVEKRSHITLKIAVSQD 161
L A + LKIA+S +
Sbjct: 182 LIAPFRA-WHDGNFSFLKIALSAN 204
>gi|315146338|gb|EFT90354.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX4244]
Length = 173
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARHEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|294140156|ref|YP_003556134.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
violacea DSS12]
gi|293326625|dbj|BAJ01356.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
violacea DSS12]
Length = 169
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
+ D FMS A+ + G V ++VK G VI G G HAE+Q
Sbjct: 2 ALDQHFMSMAMEMAHKAEAVGEV----PVGAVLVKHGQVISAGFNYCIGLHDPSAHAEMQ 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
L +AG+ T YVTLEPC+
Sbjct: 58 CLRQAGKVTENYRLLDTTLYVTLEPCAMC 86
>gi|255534103|ref|YP_003094475.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
gi|255347087|gb|ACU06413.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
Length = 157
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM AL+ ++ L + ++V G ++GRG HAE+QA
Sbjct: 14 AEDEHFMRLALQEAQKAYDL--KEIPIGAIVVCKGKIVGRGHNLTEQLNDVTAHAEMQAF 71
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVT+EPC
Sbjct: 72 TAASQTLGGKYLKDCTLYVTIEPCVMC 98
>gi|254448832|ref|ZP_05062288.1| zinc-binding domain protein [gamma proteobacterium HTCC5015]
gi|198261522|gb|EDY85811.1| zinc-binding domain protein [gamma proteobacterium HTCC5015]
Length = 163
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AL + G V ++V+ VI HAE+Q L
Sbjct: 9 DECYMQLALEQAELAAQVGEV----PVGAVLVQGDEVIASAFNRPIAEHDPTAHAEIQVL 64
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+AG+ T YVTLEPC
Sbjct: 65 RQAGQSQQNYRLCDTTLYVTLEPCVMC 91
>gi|52079816|ref|YP_078607.1| guanine deaminase [Bacillus licheniformis ATCC 14580]
gi|52785186|ref|YP_091015.1| GuaD [Bacillus licheniformis ATCC 14580]
gi|319646374|ref|ZP_08000604.1| GuaD protein [Bacillus sp. BT1B_CT2]
gi|52003027|gb|AAU22969.1| guanine deaminase [Bacillus licheniformis ATCC 14580]
gi|52347688|gb|AAU40322.1| GuaD [Bacillus licheniformis ATCC 14580]
gi|317392124|gb|EFV72921.1| GuaD protein [Bacillus sp. BT1B_CT2]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
F+ A+ + V + T +IVKDG +I G T+ HAEV A+
Sbjct: 3 HEAFLQRAIDLAVESV-KSGTGGPFGAVIVKDGQIIAEGKNNVTTSNDPTAHAEVTAIRL 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A E + Y + EPC
Sbjct: 62 ACEALGDYQLNDCILYTSCEPCPMC 86
>gi|251783385|ref|YP_002997690.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242392017|dbj|BAH82476.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 175
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 5 SFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
S D FM AL+ + + + C+IVKDG +IGRG A HAE+
Sbjct: 4 SLDEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ EA T +VT+EPC
Sbjct: 62 AINEANAHEGNWRLLDTTMFVTIEPCVMCS 91
>gi|119468555|ref|ZP_01611646.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium
TW-7]
gi|119448063|gb|EAW29328.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium
TW-7]
Length = 165
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M +A +M AL +++ L V ++VKD +I G T HAE
Sbjct: 1 MNKPFDNAYWMEQALLYAKQAEQLNEI--PVGAVLVKDNQLIASGYNRSITDNDPSAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ A+ EAG+ T YVTLEPCS
Sbjct: 59 MIAVREAGKALNNYRLIDCTLYVTLEPCSMC 89
>gi|46908898|ref|YP_015287.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|254851976|ref|ZP_05241324.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
R2-503]
gi|254931009|ref|ZP_05264368.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes
HPB2262]
gi|254994111|ref|ZP_05276301.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes FSL J2-064]
gi|300763522|ref|ZP_07073520.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes FSL N1-017]
gi|46882171|gb|AAT05464.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|258605274|gb|EEW17882.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
R2-503]
gi|293582555|gb|EFF94587.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes
HPB2262]
gi|300515799|gb|EFK42848.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes FSL N1-017]
gi|328469576|gb|EGF40517.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes 220]
gi|332313149|gb|EGJ26244.1| tRNA-specific adenosine deaminase [Listeria monocytogenes str.
Scott A]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|228963119|ref|ZP_04124290.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228796575|gb|EEM44012.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 195
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ ++ + + +IV DG VI T HAE+ A+
Sbjct: 4 DRDIYFMQLAIEEAKKAEEMQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 62 DEACKKLGTWRLEDATLYVTLEPCPMC 88
>gi|315284032|ref|ZP_07872011.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
gi|313612324|gb|EFR86487.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|291085019|ref|ZP_06351792.2| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC
29220]
gi|291071670|gb|EFE09779.1| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC
29220]
Length = 154
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
M AL ++ V ++V + VIG G G HAE+ AL + G
Sbjct: 1 MRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLV 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
AT YVTLEPC
Sbjct: 59 LQNYRLLDATLYVTLEPCVMC 79
>gi|217966083|ref|YP_002351761.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
gi|217335353|gb|ACK41147.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23]
gi|307572307|emb|CAR85486.1| tRNA-specific adenosine deaminase, putative [Listeria
monocytogenes L99]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|47092339|ref|ZP_00230130.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes str. 4b H7858]
gi|226225270|ref|YP_002759377.1| hypothetical protein Lm4b_02693 [Listeria monocytogenes
Clip81459]
gi|254824916|ref|ZP_05229917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
J1-194]
gi|255520888|ref|ZP_05388125.1| hypothetical protein LmonocFSL_06656 [Listeria monocytogenes FSL
J1-175]
gi|47019318|gb|EAL10060.1| cytidine/deoxycytidylate deaminase family protein [Listeria
monocytogenes str. 4b H7858]
gi|225877732|emb|CAS06447.1| Conserved hypothetical proteins [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|293594156|gb|EFG01917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
J1-194]
gi|328468199|gb|EGF39205.1| hypothetical protein LM1816_02662 [Listeria monocytogenes 1816]
Length = 156
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|257866910|ref|ZP_05646563.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC30]
gi|257872573|ref|ZP_05652226.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC10]
gi|257800868|gb|EEV29896.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC30]
gi|257806737|gb|EEV35559.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC10]
Length = 168
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
FM A++ +R GL + ++V DG +IGRG T HAE+ A+EEA
Sbjct: 14 FFMEEAIKEARKAEGLAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEAC 71
Query: 65 E-----EARGATAYVTLEPCSHYG 83
A +VTLEPC
Sbjct: 72 RTVGSWRLEQAQLFVTLEPCPMCS 95
>gi|257454187|ref|ZP_05619457.1| tRNA-specific adenosine deaminase [Enhydrobacter aerosaccus SK60]
gi|257448360|gb|EEV23333.1| tRNA-specific adenosine deaminase [Enhydrobacter aerosaccus SK60]
Length = 187
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D FM AAL + G P V +IV G +I +G HAE+
Sbjct: 23 FYDSDDAFMQAALDVAAEG-GERGEVP-VGAVIVHQGTIIAKGYNQPILSHDATAHAEIV 80
Query: 59 ALEEAGEEARG------ATAYVTLEPCSHY 82
A+ +A + +VTLEPC+
Sbjct: 81 AIRQACQYFDNYRLPADCELFVTLEPCTMC 110
>gi|315173580|gb|EFU17597.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX1346]
Length = 173
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLDEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|159026320|emb|CAO88897.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 226
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R H ++ +A+S D I A + K ++ + DA L G T+ A
Sbjct: 1 MSRPHTSVILAMSADGKIADAYQSAARFASATDKIRLEQHLSSMDATLFGANTLRAYHTS 60
Query: 207 LTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L R H R I+ +L K + +I E
Sbjct: 61 LPIRHPDFLAHRQQRGLSSQPIQIVCSYSGQLDPQMKFFQQPFPRWLITAAE-----KVA 115
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ + + + C D K + + G+ L + GG + S + L+D I L +
Sbjct: 116 VWENRGLFELVLVCGDWKAIFSQFTALGIKKLAILGGGELIASLLAEDLIDEIYLTICPL 175
Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
++G +PL + + + +++ L Y
Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215
>gi|307153713|ref|YP_003889097.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 7822]
gi|306983941|gb|ADN15822.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7822]
Length = 227
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 15/224 (6%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
KR H + +A++ D I + KN + AQ DA+L G GT+ A
Sbjct: 1 MKRPHTLVVLAMTADGKIADKHSSAARFGSDADKNHLETQIAQVDAVLFGAGTLRAYHTS 60
Query: 207 LT--------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA- 257
R + P+ I+ L+ + + + +L ++ ++
Sbjct: 61 FPISNPELLQWRKQQHKPPQPVHIVCSASGNLNPEMRFFRQSLPRWLLTTHRGENTWQQT 120
Query: 258 --LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
F + + + K G+ L + GG + S + + L+D L
Sbjct: 121 NSEGFERILKADDLDNRINWLKAFEQFTTLGLEKLAILGGGGLVASLLEAALIDEFYLTL 180
Query: 316 SQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYI 355
+++G P+P+E + + ++ L Y
Sbjct: 181 CPLLLGGTDAPTPVEGLGFSQQQAQELELLSVKQIEGEIFLHYR 224
>gi|220930799|ref|YP_002507708.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
gi|220001127|gb|ACL77728.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
Length = 152
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
+FM AA++ ++ G + V +IVK+G +I G HAE++AL+
Sbjct: 6 EQFMLAAIQQAKEAYKNGES----PVGAVIVKNGEIIAYGCNRREEKLDVTSHAEIEALK 61
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + + G YVTLEPC
Sbjct: 62 KAAKEIGTWKLDGCDMYVTLEPCPMC 87
>gi|50122182|ref|YP_051349.1| tRNA-specific adenosine deaminase [Pectobacterium atrosepticum
SCRI1043]
gi|49612708|emb|CAG76158.1| putative cytidine and deoxycytidylate deaminase [Pectobacterium
atrosepticum SCRI1043]
Length = 174
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ G V ++V D IG G G HAE+ AL
Sbjct: 14 EYWMRYALTLAQRAQDEGEV----PVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMALR 69
Query: 62 EAGEEARG-----ATAYVTLEPCSHY 82
+ G + T YVTLEPC
Sbjct: 70 QGGLVLQNYRLLETTLYVTLEPCIMC 95
>gi|86143339|ref|ZP_01061741.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
gi|85830244|gb|EAQ48704.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
Length = 156
Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
+M A+ + + + C+IVKDG +IG+G HAEV A+
Sbjct: 2 DHKHYMQEAVTAALKGMQN-NEGGPFGCVIVKDGKIIGKGNNKVTSTNDPTAHAEVTAIR 60
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
+A + G Y + EPC
Sbjct: 61 DACKNLGSFQLEGCILYTSCEPCPMC 86
>gi|167839755|ref|ZP_02466439.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
MSMB43]
Length = 54
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
S D M+ ALR + + T NP V C+I + G +G G G P
Sbjct: 3 TFSDIDRAHMAHALRLAEQGLYTTHPNPRVGCVIARGGQTLGTGWHRRAGEP 54
>gi|313616657|gb|EFR89453.1| tRNA-specific adenosine deaminase [Listeria innocua FSL S4-378]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL ++ G + ++V DG +IGR T HAE+ A+E+
Sbjct: 5 FFMQQALEEAKKAREIGEV----PIGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIED 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|225869728|ref|YP_002745675.1| deaminase [Streptococcus equi subsp. equi 4047]
gi|225699132|emb|CAW92326.1| putative deaminase [Streptococcus equi subsp. equi 4047]
Length = 164
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
M S + FM AL+ + + + C+IVK G +IGRG A HA
Sbjct: 1 MSYSKQEQEYFMREALKEAEKSLLKDEI--PIGCVIVKAGHIIGRGHNAREERNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EIMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|257876509|ref|ZP_05656162.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC20]
gi|257810675|gb|EEV39495.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC20]
Length = 168
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
FM A++ +R GL + ++V DG +IGRG T HAE+ A+EEA
Sbjct: 14 FFMEEAIKEARKAEGLAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEAC 71
Query: 65 E-----EARGATAYVTLEPCSHYG 83
A +VTLEPC
Sbjct: 72 RTVGSWRLEQAQLFVTLEPCPMCS 95
>gi|255534275|ref|YP_003094646.1| tRNA-specific adenosine-34 deaminase [Flavobacteriaceae bacterium
3519-10]
gi|255340471|gb|ACU06584.1| tRNA-specific adenosine-34 deaminase [Flavobacteriaceae bacterium
3519-10]
Length = 143
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D +M AL+ ++ + + C+IV + +I + HAE+QA+
Sbjct: 4 DEYYMKIALQEAQQALEKDEV--PIGCIIVSNNRIIAKAHNLTEALNDVTAHAEMQAITS 61
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVTLEPC
Sbjct: 62 AANYLGGKYLQNCTLYVTLEPCVMC 86
>gi|213612302|ref|ZP_03370128.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 163
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
+M AL ++ V ++V + VIG G G HAE+ AL + G
Sbjct: 1 YWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGG 58
Query: 65 -----EEARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 LVLQNYRLLDTTLYVTLEPCVMC 81
>gi|225867781|ref|YP_002743729.1| deaminase [Streptococcus equi subsp. zooepidemicus]
gi|225701057|emb|CAW97859.1| putative deaminase [Streptococcus equi subsp. zooepidemicus]
Length = 164
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
M S + FM AL+ + + + C+IVK G +IGRG A HA
Sbjct: 1 MSYSKQEQEYFMREALKEAEKSLLKDEI--PIGCVIVKAGHIIGRGHNAREERNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EIMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|209527439|ref|ZP_03275944.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima
CS-328]
gi|209492112|gb|EDZ92462.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima
CS-328]
Length = 234
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 14/234 (5%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
R + T+ +A+S D I + AQ+DA+L G GT+
Sbjct: 1 MDEIIPTTRPYTTVILAMSADGKIADPMRSPARFGSNADIIHLERQIAQADAVLFGNGTL 60
Query: 201 LADDPELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
A L R + P +I+ K++ K + + ++
Sbjct: 61 AAYGTVLRVSSTELLGAREKNGKPPQPAQIVCSASGKINPTLKFFQQPVPKWLLTTFLGG 120
Query: 253 DPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
P + + + + L L RG+ L V GG + S + +D
Sbjct: 121 QPWKRFSDHFDEVIVADDSNGVITWSEALQQLRDRGIQKLAVLGGGQLVASLMAYHAIDE 180
Query: 311 IILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGKNLC 360
L +++G P+P++ + + +V L Y K+
Sbjct: 181 FQLTVCPLILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKSAL 234
>gi|332971231|gb|EGK10194.1| zinc-binding domain protein [Desmospora sp. 8437]
Length = 152
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
++M A+R + G + ++V++G +IGRG HAE+ A+ E
Sbjct: 5 QWMMEAIREAEQAEAKGEV----PIGAVLVREGEIIGRGHNLRESHQDPTAHAEMIAIRE 60
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G G YVTLEPC
Sbjct: 61 AARLLGGWRLAGCELYVTLEPCPMC 85
>gi|282918346|ref|ZP_06326083.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
C427]
gi|282317480|gb|EFB47852.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus
C427]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D FM+ A+ ++ +G + +I KD VI R T HAE
Sbjct: 2 TNDIYFMTLAIEEAKKAAQLGEV----PIGAIITKDDEVIARANNLRETLQQPTAHAEHI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A+E A + T YVTLEPC + ++
Sbjct: 58 AIERAAKVLGSWRLEDCTLYVTLEPCVMCAGTIVMSR 94
>gi|290891900|ref|ZP_06554897.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
J2-071]
gi|290558494|gb|EFD92011.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
J2-071]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|254827285|ref|ZP_05231972.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
N3-165]
gi|258599666|gb|EEW12991.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL
N3-165]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|111221324|ref|YP_712118.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
gi|111148856|emb|CAJ60534.1| Putative riboflavin/cytosine deaminase (partial) [Frankia alni
ACN14a]
Length = 245
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 15/221 (6%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ A+S D I + ++G +V +RA DAILVG TV DDP L
Sbjct: 20 PYVICSCAMSLDGRIDDCSQARLILSGPADLERVDEVRAGCDAILVGAETVRRDDPRLAV 79
Query: 210 RLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
R + +P++++L L S++ T + ++
Sbjct: 80 RAEHRRAARVAAGLPPTPVKVVLSGGGDLDPRSRVFGTDPVDTLVYRRAGSAAPPPSWSA 139
Query: 262 KKNINIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++++ R + +L RGV LLVEGG +V +F+ + LVD + L +
Sbjct: 140 APRVSVVDLPGRPWVDVAAVLADLDRRGVRRLLVEGGTSVHTAFLTAGLVDELHLAVAPF 199
Query: 319 VIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYI 355
+GE P+ + G ++ V L Y+
Sbjct: 200 FVGERDAPAFVGPGAFPQDVRSPLRLAEVRQLDDVVLLRYL 240
>gi|294625308|ref|ZP_06703945.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665062|ref|ZP_06730368.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600377|gb|EFF44477.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605180|gb|EFF48525.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 169
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL+ + P V ++V G V+G G ++ HAE
Sbjct: 10 PHAAIDVHWMQHALQLAERAERDYDEIP-VGAVLVDAQGNVLGEGWNFNIASHDPSAHAE 68
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 69 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 99
>gi|325128107|gb|EGC51002.1| tRNA-specific adenosine deaminase [Neisseria meningitidis N1568]
Length = 163
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 17 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 72
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 73 QAGREIQNYRLDGCDIYITLEPCAMC 98
>gi|16077086|ref|NP_387899.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307827|ref|ZP_03589674.1| hypothetical protein Bsubs1_00090 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312149|ref|ZP_03593954.1| hypothetical protein BsubsN3_00090 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317082|ref|ZP_03598376.1| hypothetical protein BsubsJ_00090 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321345|ref|ZP_03602639.1| hypothetical protein BsubsS_00090 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|112703|sp|P21335|TADA_BACSU RecName: Full=tRNA-specific adenosine deaminase
gi|40011|emb|CAA36389.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
168]
gi|467408|dbj|BAA05254.1| unknown [Bacillus subtilis]
gi|2632285|emb|CAB11794.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
subtilis str. 168]
gi|227231|prf||1617102A 17kD protein
Length = 161
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A++ ++ G + ++V +G +I R T HAE+
Sbjct: 2 TQDELYMKEAIKEAKKAEEKGEV----PIGAVLVINGEIIARAHNLRETEQRSIAHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
++EA + GAT YVTLEPC
Sbjct: 58 VIDEACKALGTWRLEGATLYVTLEPCPMC 86
>gi|16801927|ref|NP_472195.1| hypothetical protein lin2867 [Listeria innocua Clip11262]
gi|16415402|emb|CAC98093.1| lin2867 [Listeria innocua Clip11262]
Length = 154
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL ++ G + ++V DG +IGR T HAE+ A+E+
Sbjct: 5 FFMQQALEEAKKAREIGEV----PIGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIED 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|19745357|ref|NP_606493.1| hypothetical protein spyM18_0196 [Streptococcus pyogenes
MGAS8232]
gi|73921072|sp|Q8P2R7|Y196_STRP8 RecName: Full=Uncharacterized deaminase spyM18_0196
gi|19747462|gb|AAL96992.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 159
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S + FM AL+ + + + C+IVKDG +IGRG A HA
Sbjct: 1 MPYSLEEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|225181888|ref|ZP_03735323.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
gi|225167402|gb|EEG76218.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
Length = 158
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
++ D FM AL+ ++ G + ++V+DG +I R HAE
Sbjct: 1 MTDQD--FMREALKEAQLAFEKGEI----PIGAVLVRDGNIIARDHNRREELDDPTAHAE 54
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ L EAG T YVT+EPC
Sbjct: 55 ILVLREAGRTLGGWRLPNTTLYVTIEPCPMC 85
>gi|326560079|gb|EGE10469.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 46P47B1]
gi|326561665|gb|EGE12002.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 103P14B1]
gi|326565806|gb|EGE15968.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC1]
gi|326570459|gb|EGE20499.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC8]
gi|326573436|gb|EGE23404.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 101P30B1]
Length = 181
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
S D M+ AL ++ G V ++V +G ++G G T HAE+
Sbjct: 22 SMRDVEMMNRALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEI 77
Query: 58 QALEEAGEEA------RGATAYVTLEPCSHY 82
A+ A E +G YVTLEPC+
Sbjct: 78 VAVRRACETLNNYRLPKGCILYVTLEPCTMC 108
>gi|322412766|gb|EFY03674.1| putative cytidine/deoxycytidylate deaminase family protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 175
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 5 SFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
S D FM AL+ + + + C+IVKDG +IGRG A HAE+
Sbjct: 4 SLDEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMM 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ EA T +VT+EPC
Sbjct: 62 AINEANAHEGNWRLLDTTMFVTIEPCVMCS 91
>gi|311067822|ref|YP_003972745.1| guanine deaminase [Bacillus atrophaeus 1942]
gi|310868339|gb|ADP31814.1| guanine deaminase [Bacillus atrophaeus 1942]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V +IVKDG +I G T+ HAEV A+
Sbjct: 3 HNEFLQRAVELATEGV-NAGIGGPFGAVIVKDGKIIAEGQNNVTTSNDPTAHAEVTAIRN 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A E + Y + EPC
Sbjct: 62 ACEALGSYQLDDCILYTSCEPCPMC 86
>gi|88858578|ref|ZP_01133220.1| hypothetical protein PTD2_14349 [Pseudoalteromonas tunicata D2]
gi|88820195|gb|EAR30008.1| hypothetical protein PTD2_14349 [Pseudoalteromonas tunicata D2]
Length = 165
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M AL + V ++V +I G + HAE+ A+
Sbjct: 4 DEYWMQQALLRADKAEAEGEI--PVGAIVVYQDEIIAEGWNRSIISHDPSAHAEMLAIRN 61
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG + T YVTLEPC+
Sbjct: 62 AGIALQNYRMIDCTLYVTLEPCAMC 86
>gi|313668625|ref|YP_004048909.1| cytosine deaminase [Neisseria lactamica ST-640]
gi|313006087|emb|CBN87548.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria lactamica
020-06]
Length = 239
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM AL ++ +G V +IV DG +I HAE+ AL +
Sbjct: 94 HFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSKIQNYRLDGCDIYITLEPCAMC 174
>gi|261401120|ref|ZP_05987245.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
gi|269208892|gb|EEZ75347.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970]
Length = 239
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM AL ++ +G V +IV DG +I HAE+ AL +
Sbjct: 94 HFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|163792400|ref|ZP_02186377.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
gi|159182105|gb|EDP66614.1| putative nucleotide deaminase [alpha proteobacterium BAL199]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D + + A+ S+ +T ++V+DG+++G G T + HAEV A+
Sbjct: 3 DEKHLRRAIELSQ-GNAEAATGGPFGAVVVRDGMIVGEGANRVITDFDPTAHAEVVAIRA 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + GA Y + EPC
Sbjct: 62 ACRQLGTYDLSGAVIYTSCEPCPMC 86
>gi|121634737|ref|YP_974982.1| putative cytosine deaminase [Neisseria meningitidis FAM18]
gi|120866443|emb|CAM10189.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria meningitidis
FAM18]
gi|325132183|gb|EGC54879.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M6190]
gi|325136130|gb|EGC58739.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M0579]
gi|325198167|gb|ADY93623.1| tRNA-specific adenosine deaminase [Neisseria meningitidis G2136]
gi|325202278|gb|ADY97732.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
M01-240149]
Length = 239
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM AL ++ +G V +IV DG +I HAE+ AL +
Sbjct: 94 HFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|325294796|ref|YP_004281310.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
1-reductase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065244|gb|ADY73251.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
1-reductase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 220
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 13/222 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+R ++ + V+ D + +A + + + +H +RA+ D I+VG T+
Sbjct: 1 MERPYVIIVSEVTIDGKLTLAKGVSSKEIMKLMDEEANKYLHQIRAECDGIMVGANTIRI 60
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D+P LT R +P RII + LD+ I+ T + VI V++ ++
Sbjct: 61 DNPNLTVRYVK--GKNPTRIIPVSTGDIPLDANILNTEVAPTVIAVSKKAPAEKIEKLKE 118
Query: 263 KNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
K + +I + D +L + L G+ L+VEGG+ V I + L+D I L +V+
Sbjct: 119 KGVQVIVAGNEKVDFAELFSKLYEMGIRKLMVEGGSKVNWELIKNDLIDEIRLIHLPVVV 178
Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
G +PS + + K F + G+ + EY K
Sbjct: 179 GGDDVPSLVSGEGFKTLDAVKRFEIKKVFKCGNQIVTEYGRK 220
>gi|37527198|ref|NP_930542.1| tRNA-specific adenosine deaminase [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36786632|emb|CAE15694.1| unnamed protein product [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 173
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M A+ + G V ++V D +I G + H
Sbjct: 1 MIEIYSDEYWMQQAIERAIKAWEQGEI----PVGAILVADNKIISEGWNQSIIAHDPTAH 56
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ L + GE R T YVTLEPC+
Sbjct: 57 AEIIVLRKGGERLRNYRLINTTLYVTLEPCTMC 89
>gi|326560462|gb|EGE10844.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 7169]
Length = 159
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D M+ AL ++ G V ++V +G ++G G T HAE+ A+
Sbjct: 3 DVEMMNHALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAV 58
Query: 61 EEAGEEA------RGATAYVTLEPCSHY 82
A E +G YVTLEPC+
Sbjct: 59 RRACETLNNYRLPKGCILYVTLEPCTMC 86
>gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
17982]
gi|153798070|gb|EDN80490.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC
17982]
Length = 435
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV------TAYGGCPHAEVQALEEA 63
M AL + T P V ++V +G +IGRG G HAE+ AL EA
Sbjct: 1 MGKALFLANRAR-ETGDVP-VGAVVVDENGRIIGRGWNCREANHDPAG--HAEIVALREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 57 GRSRGTWRLTGCTLIVTLEPCTMC 80
>gi|255023462|ref|ZP_05295448.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
J1-208]
Length = 156
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|224025750|ref|ZP_03644116.1| hypothetical protein BACCOPRO_02491 [Bacteroides coprophilus DSM
18228]
gi|224018986|gb|EEF76984.1| hypothetical protein BACCOPRO_02491 [Bacteroides coprophilus DSM
18228]
Length = 144
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M AL+ +R G V ++V +I R T HAE+Q
Sbjct: 2 ADDTYYMRQALQEAREAANRGEV----PVGAVVVCRDRIIARAHNLTETLTDVTAHAEMQ 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A G+ T YVT+EPC
Sbjct: 58 AITAAAGWLGGKYLNNCTLYVTIEPCVMC 86
>gi|146319707|ref|YP_001199419.1| cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
gi|253752698|ref|YP_003025839.1| deaminase [Streptococcus suis SC84]
gi|253754524|ref|YP_003027665.1| deaminase [Streptococcus suis P1/7]
gi|253756457|ref|YP_003029597.1| deaminase [Streptococcus suis BM407]
gi|145690513|gb|ABP91019.1| Cytosine/adenosine deaminase [Streptococcus suis 05ZYH33]
gi|251816987|emb|CAZ52636.1| putative deaminase [Streptococcus suis SC84]
gi|251818921|emb|CAZ56764.1| putative deaminase [Streptococcus suis BM407]
gi|251820770|emb|CAR47532.1| putative deaminase [Streptococcus suis P1/7]
gi|292559319|gb|ADE32320.1| Cytosine/adenosine deaminase [Streptococcus suis GZ1]
gi|319759114|gb|ADV71056.1| cytosine/adenosine deaminase [Streptococcus suis JS14]
Length = 173
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM+ AL+ +R + + C+IVKDG +IGRG A HAEV A++EA
Sbjct: 9 EYFMTQALQEARKSLEKDEI--PIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+T +VT+EPC
Sbjct: 67 NNVEGNWRLLDSTLFVTIEPCVMCS 91
>gi|326577134|gb|EGE27028.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis O35E]
Length = 181
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
S D M+ AL ++ G V ++V +G ++G G T HAE+
Sbjct: 22 SMRDVEMMNRALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEI 77
Query: 58 QALEEAGEEA------RGATAYVTLEPCSHY 82
A+ A E +G YVTLEPC+
Sbjct: 78 VAVRRACETLNNYRLPKGCILYVTLEPCTMC 108
>gi|253988801|ref|YP_003040157.1| tRNA -specific adenosine deaminase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253780251|emb|CAQ83412.1| similar to ecoli yfhc protein, tRNA-specific adenosine deaminase
[Photorhabdus asymbiotica]
Length = 169
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M D +M A+ + V ++V D +I G + HAE
Sbjct: 1 MTKIYSDEYWMQQAMERAIKAWEQGEI--PVGAVLVADNEIIAEGWNQSIIAHDPSAHAE 58
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V AL + GE+ + T YVTLEPC+
Sbjct: 59 VIALRKGGEQLQNYRLLNTTLYVTLEPCAMC 89
>gi|227486589|ref|ZP_03916905.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
gi|227235407|gb|EEI85422.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172]
Length = 158
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ D FM+ A+ ++ + + ++V ++GRG HAE+
Sbjct: 5 FTKADKFFMTEAINEAKLAK--SIDEVPIGAVVVCGDRIVGRGHNFTYKGKSALNHAEIY 62
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL+EAG+ T YVTLEPC
Sbjct: 63 ALKEAGKNIGDFRLEECTMYVTLEPCLMC 91
>gi|332830410|gb|EGK03038.1| hypothetical protein HMPREF9455_01288 [Dysgonomonas gadei ATCC
BAA-286]
Length = 147
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D +M AL ++ + +IV +I R T HAE
Sbjct: 1 MTEILTDEHYMRQALNEAQIAFEK--KEVPIGAVIVCQNRIIARAHNLTETLNDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QA+ A G+ T YVTLEPC
Sbjct: 59 MQAITAAANFLGGKYLTNCTLYVTLEPCPMC 89
>gi|123441377|ref|YP_001005364.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088338|emb|CAL11129.1| putative zinc-binding protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 161
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + G V ++V D VIG G HAE+ AL + G
Sbjct: 1 MQRALALALRAQVEGEV----PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ AT YVTLEPC
Sbjct: 57 QVVQNYRLIDATLYVTLEPCVMC 79
>gi|222628465|gb|EEE60597.1| hypothetical protein OsJ_13992 [Oryza sativa Japonica Group]
Length = 739
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 30/172 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------------VTAY 49
D ++ + +R G TS NP
Sbjct: 2 DDDGVYIRWCVELARKAAGHTSPNPM---------------VGCVVVRGGRVVGEGFHPE 46
Query: 50 GGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
G PHAEV AL +A + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+
Sbjct: 47 AGQPHAEVFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNP 106
Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
V+ +G++ L GI V ME E + +
Sbjct: 107 IVASKGIERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLS 158
>gi|92118638|ref|YP_578367.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14]
gi|91801532|gb|ABE63907.1| tRNA-adenosine deaminase [Nitrobacter hamburgensis X14]
Length = 148
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-- 63
FM AL + G + P + C+IV+DG VI R +T HAEV AL A
Sbjct: 6 FMDLALE-AANSAGKSGEVP-IGCVIVRDGEVIAAAGNRTLTDRDPTAHAEVLALRAAAH 63
Query: 64 ---GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 64 AIGSERLTDCDLYVTLEPCTMC 85
>gi|325204006|gb|ADY99459.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
M01-240355]
Length = 239
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMCEALRQAEQSSADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGREIQNYRLDGCDIYITLEPCAMC 174
>gi|154494050|ref|ZP_02033370.1| hypothetical protein PARMER_03395 [Parabacteroides merdae ATCC
43184]
gi|154086310|gb|EDN85355.1| hypothetical protein PARMER_03395 [Parabacteroides merdae ATCC
43184]
Length = 147
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D FM AL + G V +IV + +I R H
Sbjct: 1 MMDPFNDEYFMKQALVEACSAAEEGEV----PVGAVIVCNNQIIARAHNQTERLNDPTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+ A + G + YVT+EPC
Sbjct: 57 AEMLAITAAVGVLGAKYLTGCSLYVTVEPCVMC 89
>gi|218768019|ref|YP_002342531.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
gi|121052027|emb|CAM08336.1| putative cytosine deaminase [Neisseria meningitidis Z2491]
Length = 239
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMCEALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGREMQNYRLDGCDIYITLEPCAMC 174
>gi|15676827|ref|NP_273972.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
meningitidis MC58]
gi|7226171|gb|AAF41340.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
meningitidis MC58]
gi|316985330|gb|EFV64279.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Neisseria meningitidis H44/76]
gi|325140176|gb|EGC62703.1| tRNA-specific adenosine deaminase [Neisseria meningitidis CU385]
gi|325200381|gb|ADY95836.1| tRNA-specific adenosine deaminase [Neisseria meningitidis H44/76]
Length = 239
Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMCEALRQAEQSSADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGREIQNYRLDGCDIYITLEPCAMC 174
>gi|195977341|ref|YP_002122585.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974046|gb|ACG61572.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 164
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
M S + FM AL+ ++ + + C+IVK G +IGRG A HA
Sbjct: 1 MSYSKQEQEYFMREALKEAKKSLLKDEI--PIGCVIVKAGHIIGRGHNAREERNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 59 EIMAISEANVHEGNWRLLDTTLFVTIEPCVMCS 91
>gi|294670266|ref|ZP_06735159.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308003|gb|EFE49246.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 260
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 11/219 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ LK A S D ++ S ITG +++ V +LRA+S A+L GIGTVLADDP+L
Sbjct: 41 PFVRLKCAASLDGKTALSDGLSQWITGEAARHDVQILRAESCAVLTGIGTVLADDPQLNV 100
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL----AFRKKNI 265
R P+RI+LD +L +K++ +++ + A
Sbjct: 101 RAFPT-LRQPLRIVLDSRLRLPPTTKLLADPASPVLLLTAVPPEKYPAALTAVPHLDILT 159
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L +LT+L RG+ LLVE GA + +F+ + L D I+LY++ ++G
Sbjct: 160 VPAADGRISLPAVLTLLAERGIGELLVEAGATLCGAFLQAGLADEIVLYQAGKILGGDAR 219
Query: 326 PSPL-----EEGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
++ G D+ K
Sbjct: 220 SLFDLPENPAALQQPASWQTRSVAILDGGDLKQVLRKKE 258
>gi|257062766|ref|YP_003142438.1| tRNA-adenosine deaminase [Slackia heliotrinireducens DSM 20476]
gi|256790419|gb|ACV21089.1| tRNA-adenosine deaminase [Slackia heliotrinireducens DSM 20476]
Length = 172
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
D RFM AA+ + G + ++V G +I G HAE
Sbjct: 14 EDDERFMRAAIEQAHLAELDGEV----PIGAVVVCQGEIIAEGRNHRETDQDPSAHAEFS 69
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ +A T YVTLEPC
Sbjct: 70 AIMQASRELERWRLPDCTVYVTLEPCIMCS 99
>gi|134097849|ref|YP_001103510.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
gi|133910472|emb|CAM00585.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
Length = 162
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
+M+ A+ + V ++VKDG ++ G T HAEV A+ A +
Sbjct: 13 WMARAIELATRSVADGGG--PFGAVVVKDGEIVATGHNQVTTNLDPTAHAEVVAIRNACQ 70
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G + EPC
Sbjct: 71 ALGTFKLDGCVLVTSCEPCPMC 92
>gi|91215472|ref|ZP_01252443.1| putative cytosine/adenosine deaminase [Psychroflexus torquis ATCC
700755]
gi|91186424|gb|EAS72796.1| putative cytosine/adenosine deaminase [Psychroflexus torquis ATCC
700755]
Length = 149
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + D FM AL+ ++ G V ++ + +I + H
Sbjct: 1 MLIPFDDHYFMKKALQEAQQAFDKGEI----PVGAVVTHNNQIIAKSHNLTEQLTDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ RG T YVTLEPC
Sbjct: 57 AEMQAITAAANHIGGKYLRGCTLYVTLEPCQMC 89
>gi|283131456|dbj|BAI63455.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae
subsp. equisimilis]
Length = 183
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 5 SFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
S D FM AL+ + + + C+IVKDG +IGRG HAE+
Sbjct: 12 SLDEQTYFMQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNVREESNQAIMHAEMM 69
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ EA T +VT+EPC
Sbjct: 70 AINEANAHEGNWRLLDTTMFVTIEPCVMCS 99
>gi|117919687|ref|YP_868879.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
gi|117612019|gb|ABK47473.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3]
Length = 222
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VK G I G + C HAE+Q L
Sbjct: 59 DEHWMRVAMSMAEKAEAAGEV----PVGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCL 114
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ T YVTLEPC+
Sbjct: 115 RAAGQTIENYRLLDTTLYVTLEPCAMC 141
>gi|330833669|ref|YP_004402494.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
gi|329307892|gb|AEB82308.1| cytosine/adenosine deaminase [Streptococcus suis ST3]
Length = 173
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM+ AL+ +R + + C+IVKDG +IGRG A HAEV A++EA
Sbjct: 9 EYFMTQALQEARKSLEKDEI--PIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+T +VT+EPC
Sbjct: 67 NNVEGNWRLLDSTLFVTIEPCVMCS 91
>gi|315033440|gb|EFT45372.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0017]
Length = 173
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 ELFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|288554625|ref|YP_003426560.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus
OF4]
gi|288545785|gb|ADC49668.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus
OF4]
Length = 162
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
++ +M ALR + G + +IVKDG VI HAE
Sbjct: 1 MAETHEDWMKLALREADAAEQIGEV----PIGAVIVKDGEVIAAAHNRRECDHQAIAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A++EA + G T YVTLEPC
Sbjct: 57 LLAIKEACDVLGSWRLSGCTLYVTLEPCPMC 87
>gi|224498434|ref|ZP_03666783.1| hypothetical protein LmonF1_01565 [Listeria monocytogenes Finland
1988]
Length = 156
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|326790135|ref|YP_004307956.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
DSM 5427]
gi|326540899|gb|ADZ82758.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum
DSM 5427]
Length = 175
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM AL + T + +IV VIGRG T HAEV A+
Sbjct: 2 EKDIEFMKQALIEAEKA--FTLDEAPIGAVIVYKEQVIGRGHNRRNTDKNALAHAEVMAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
EA + T Y+TLEPC
Sbjct: 60 NEACKHIKDWRLEECTIYITLEPCPMCS 87
>gi|254521455|ref|ZP_05133510.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
gi|219719046|gb|EED37571.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14]
Length = 174
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
PV D +M AL + P V ++V DG ++G G ++ HAE
Sbjct: 8 PVHDADEHWMRHALALAERAQREFDEIP-VGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ G+ G+T YVTLEPC+
Sbjct: 67 IVAMRVGGKVLSNHRLLGSTLYVTLEPCAMC 97
>gi|291279752|ref|YP_003496587.1| CMP/dCMP deaminase zinc-binding protein [Deferribacter
desulfuricans SSM1]
gi|290754454|dbj|BAI80831.1| CMP/dCMP deaminase, zinc-binding protein [Deferribacter
desulfuricans SSM1]
Length = 151
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
S D FM A+ + G V ++V+D VI G HAE
Sbjct: 2 FSDVDKYFMKLAIAEAYKSFEEGEV----PVGAVVVRDDEVISYGRNIKGKNKNALLHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ ++ + T YVT EPC
Sbjct: 58 MVAIHKSVKMLDDWRLNECTLYVTCEPCVMC 88
>gi|218438554|ref|YP_002376883.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7424]
gi|218171282|gb|ACK70015.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7424]
Length = 227
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 15/224 (6%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204
KR H L +A++ D I + K + + D +L G GT+ A
Sbjct: 1 MKRPHTILILAMTADGKIADRSRSAARFGSAADKIHLEKQISLVDGVLFGAGTLRAYQTS 60
Query: 205 ------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L R + P+ ++ L + + + + ++ + +
Sbjct: 61 LLICNPDFLQWRHQQNKPPQPVHLVCSASGNLDPNWRFFEQSFPRWLVTTSTGAKVWQSK 120
Query: 259 AFRKKNIN---IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
F+ + + + + L+ + +L + GG + S + +L+D L
Sbjct: 121 NFQGFDRILRGDEEDNSINWCTVFEQLISLNIQTLAILGGGELVASLLEDQLIDEFYLTL 180
Query: 316 SQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYI 355
+++G P+P+E + + + L Y
Sbjct: 181 CPLILGGKDAPTPVEGLGFLSQQAQELELLSFHQVEGEFFLHYR 224
>gi|51245291|ref|YP_065175.1| hypothetical protein DP1439 [Desulfotalea psychrophila LSv54]
gi|50876328|emb|CAG36168.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 166
Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
+ DA +M AL + G V ++V+DG +I G +T HAE+
Sbjct: 8 ARDALWMGYALDEAARAGANGEV----PVGAVLVQDGELIATGLNGMITHNDPSAHAEIV 63
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
AL +AG+ AT YVTLEPC
Sbjct: 64 ALRQAGQVLNNYRFPEATLYVTLEPCIMC 92
>gi|323705214|ref|ZP_08116790.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535640|gb|EGB25415.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 137
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M AA+ + +G V ++VKDGI+IGRG T HAE+ A+++A
Sbjct: 1 MKAAIDEAIISFKLGE----MPVGAVVVKDGIIIGRGYNLKETEKDATQHAEINAIKDAC 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ GA+ YVTLEPC
Sbjct: 57 KSIGDWRLNGASLYVTLEPCPMC 79
>gi|302325469|gb|ADL24670.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 155
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
M ALR ++ + + C+IVKDG+VIG+G HAE+ A+ A
Sbjct: 1 MRMALRQAQIAFDM--KEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIAIGTAAST 58
Query: 64 --GEEARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 59 LDNWRLDGCTLYVTLEPCPMC 79
>gi|325298404|ref|YP_004258321.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
DSM 18170]
gi|324317957|gb|ADY35848.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
DSM 18170]
Length = 144
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M AL + G V ++V G +I R T HAE+Q
Sbjct: 2 ADDTFYMKQALAEAEKASARGEV----PVGAVVVCQGRIIARAHNLTETLNDVTAHAEMQ 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A + T YVT+EPC
Sbjct: 58 AITAAANALGAKYLNDCTLYVTVEPCVMC 86
>gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404]
gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404]
Length = 590
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 11/138 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
+FM A+ + G T T +V C++V +G VI G + G HAE ALE+
Sbjct: 437 RKFMEMAIEQAEK-CGETQTQFNVGCVLVNNGKVISTGHSRELPGNTHAEQCALEKYFAE 495
Query: 63 ---AGEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
E G + T+EPCS G P + + GI+ V V +PD+ V
Sbjct: 496 HDGVKEVPEGTEIFTTMEPCSLRLSGNLPCVDRILETKGIKTCFVGVLEPDIFVKNNSSY 555
Query: 118 WLSQKGIIVDRMMESEGK 135
K + + +
Sbjct: 556 QKLLKNGVQYIHIPGYEE 573
>gi|167753725|ref|ZP_02425852.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
gi|167658350|gb|EDS02480.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216]
Length = 360
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALE 61
++ D R++ A+ SR TS+ V +I+ I G HAE +A+
Sbjct: 213 RTAEDRRYLQMAIDESRKCTPSTSS-YCVGAVILTTDRKIFTGYTHETSPTHHAEQEAIL 271
Query: 62 EA---GEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G E RGAT Y ++EPCS C++ II RRVV + +PD V +G
Sbjct: 272 KALAAGVELRGATIYSSMEPCSERKSEPESCSELIIRHEFRRVVFALYEPDCFVCCQGAL 331
Query: 118 WLSQKGIIV 126
L + I V
Sbjct: 332 NLRRHRIEV 340
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLEK 336
++T L RG+ SLLVEGGAA F LVD+ L + + +G+ P +
Sbjct: 132 IVTELEKRGLRSLLVEGGAATLRMFFAENLVDTFRLAVNPAVKVGDPRAPRLEIGSNYLQ 191
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ G Y K
Sbjct: 192 --TSHSTESLGGMRVTTYAIK 210
>gi|260893961|ref|YP_003240058.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
gi|260866102|gb|ACX53208.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
Length = 151
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M AL + G V + V +G +IGRG T HAE+ AL EA
Sbjct: 1 MREALSEAEKAYVRGEV----PVGAVAVLNGEIIGRGHNLRETLKDATAHAEILALREAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T Y TLEPC
Sbjct: 57 KKIGDWRLEEVTLYTTLEPCPMC 79
>gi|256961376|ref|ZP_05565547.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
gi|293383665|ref|ZP_06629574.1| tRNA-specific adenosine deaminase [Enterococcus faecalis R712]
gi|293387223|ref|ZP_06631781.1| tRNA-specific adenosine deaminase [Enterococcus faecalis S613]
gi|312906213|ref|ZP_07765225.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis DAPTO 512]
gi|312909559|ref|ZP_07768414.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis DAPTO 516]
gi|256951872|gb|EEU68504.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
gi|291079001|gb|EFE16365.1| tRNA-specific adenosine deaminase [Enterococcus faecalis R712]
gi|291083361|gb|EFE20324.1| tRNA-specific adenosine deaminase [Enterococcus faecalis S613]
gi|310627859|gb|EFQ11142.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis DAPTO 512]
gi|311290232|gb|EFQ68788.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis DAPTO 516]
Length = 173
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EIFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|288575144|ref|ZP_06393501.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570885|gb|EFC92442.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 162
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 45/146 (30%), Gaps = 15/146 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM A+ ++ V ++V VIGRG HAE+ A+ +A
Sbjct: 4 KNFMDLAIEEAKKAASEGDI--PVGAVVVYKNDVIGRGRNLRRIDHDPTAHAEIVAIRQA 61
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFII----ECGIRRVVVCVDDPDVRVSGR 114
+ G YVTLEPC + ++ + R +
Sbjct: 62 AKARGSWNLSGCEIYVTLEPCPMCAGAIVQSRIAKVVYGCTDPKAGASGTLYDITRDTRL 121
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHA 140
+ KGI DR F
Sbjct: 122 NHRCEVIKGIEEDRCRNMLRDFFSEC 147
>gi|213025788|ref|ZP_03340235.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 98
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 7 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 64
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 65 QGGLVLQNYRLLDTTLYVTLEPCVMC 90
>gi|284006748|emb|CBA72005.1| tRNA-specific adenosine deaminase [Arsenophonus nasoniae]
Length = 164
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M + D +M A+ + V ++V + +I G C HAE
Sbjct: 1 MEQAKKDVYWMRKAILLAEKAQAKGEI--PVGAVLVHEDKLIAEGWNQPISDHDPCAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL G+ T YVTLEPC
Sbjct: 59 IIALRAGGQYLQNYRLLNTTLYVTLEPCIMC 89
>gi|226952955|ref|ZP_03823419.1| deaminase [Acinetobacter sp. ATCC 27244]
gi|294650537|ref|ZP_06727894.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
gi|226836276|gb|EEH68659.1| deaminase [Acinetobacter sp. ATCC 27244]
gi|292823534|gb|EFF82380.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194]
Length = 174
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
P + D +M A + G V +IV +IG G A HA
Sbjct: 8 PDTFDDEYWMQFAYEQAALAAEQGEI----PVGAVIVSQSKIIGAGYNAPILLSDPSAHA 63
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+QAL A + + AT YVTLEPC+
Sbjct: 64 EIQALRMACQSIQNYRLPEDATLYVTLEPCTMC 96
>gi|289643431|ref|ZP_06475551.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
of Datisca glomerata]
gi|289506761|gb|EFD27740.1| bifunctional deaminase-reductase domain protein [Frankia symbiont
of Datisca glomerata]
Length = 224
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 12/222 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R ++ L +A+S D I AG + ++ ++V +RA DAILVG T+ D+P
Sbjct: 1 MTQRPYVLLSVAMSVDGYIDDAGDRRLLLSNDADFDRVDEVRAGVDAILVGANTIRRDNP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPH--------FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L R +E + + L ++ T + ++
Sbjct: 61 RLLVRSAARREERVACGLPESPVKVTLTGLGDLDRGARFFTTGQVEKIVYAACPAADRAR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ D DL +L L RG+ L+VEGG+A+ F+ + LVD I L +
Sbjct: 121 ERLAGVASVVDAGDPIDLNVVLADLAARGIHRLMVEGGSAIHTRFLTAGLVDEIHLVIAP 180
Query: 318 IVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYI 355
+G+ P + +G + G V L Y+
Sbjct: 181 FFVGDPTAPRFVGDGVFPRHAGHRMELAEARPLGDVVLLRYL 222
>gi|153216547|ref|ZP_01950510.1| zinc-binding domain protein [Vibrio cholerae 1587]
gi|124114222|gb|EAY33042.1| zinc-binding domain protein [Vibrio cholerae 1587]
Length = 193
Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
S+ D +FM A+ + G V ++V+DG +I G T + HAE
Sbjct: 24 FSAQDEQFMRRAIALAAQAEAQGEV----PVGAVLVRDGEIIAEGCNGSITNHDATAHAE 79
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++ + +AG+ T YVTLEPC
Sbjct: 80 IEVIRKAGKALSNYRLLDTTLYVTLEPCPMC 110
>gi|291005515|ref|ZP_06563488.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
Length = 160
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
+M+ A+ + V ++VKDG ++ G T HAEV A+ A +
Sbjct: 11 WMARAIELATRSVADGGG--PFGAVVVKDGEIVATGHNQVTTNLDPTAHAEVVAIRNACQ 68
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G + EPC
Sbjct: 69 ALGTFKLDGCVLVTSCEPCPMC 90
>gi|284176227|ref|YP_003406504.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
1-reductase [Haloterrigena turkmenica DSM 5511]
gi|284017884|gb|ADB63831.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
1-reductase [Haloterrigena turkmenica DSM 5511]
Length = 220
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 11/219 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+ + A S D + + I+G +V LRA SDA++VG+GTVLADDP LT +
Sbjct: 2 HVVVNAATSADGKLSSRRREQIAISGEADFERVDRLRAYSDAVVVGVGTVLADDPHLTVK 61
Query: 211 LNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
L P R+++D + D+ ++ A V +
Sbjct: 62 DESLCDERLERGEPKQPARVVVDSKGRTPTDAAVLDDAATTYVCLSEAAPVGSRMDLVDH 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ D DL + L +G+ ++VEGG + S + LVD + L+ VIG
Sbjct: 122 AELVTAGNDRVDLLRAFAALEEQGLERIMVEGGGELIFSLFEAGLVDELRLFVGPKVIGG 181
Query: 323 GGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEYIGKN 358
P+ + + F + L + ++
Sbjct: 182 RDAPTLADGEGFVEEFPLLHLEDLERLDDGALLRWTVED 220
>gi|261377687|ref|ZP_05982260.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
gi|269145955|gb|EEZ72373.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685]
Length = 239
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
P S FM AL + +G V +IV DG +I HA
Sbjct: 88 PQSEM-EYFMRQALVQAEMSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHA 142
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL +A G Y+TLEPC+
Sbjct: 143 EINALAQASSEMQNYRLDGCDIYITLEPCAMC 174
>gi|220904518|ref|YP_002479830.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868817|gb|ACL49152.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 155
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
RFM A+ S+ + +IV+DG +IG G HAEV+A+ A
Sbjct: 4 RRFMERAIELSKQSMAAGGG--PFGAVIVRDGKIIGEGTNNVTPHNDPTAHAEVEAIRNA 61
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ G+ + + EPC P C I I ++ D +G
Sbjct: 62 CRALETFDLSGSAIFTSCEPC------PMCLSAIWWARIGKIYFSNTKEDAADAGFDDAA 115
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ + + + + K A
Sbjct: 116 IYCEISKKLNERTLPIEQLYCKTSSEVFRQWQSCEGKTA 154
>gi|163814785|ref|ZP_02206174.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
gi|158450420|gb|EDP27415.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759]
Length = 181
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62
++M AL +R + + + C+IV +G +I RG HAE+ A+E+
Sbjct: 29 HEKYMDKALAQARRA--YANGDVPIGCVIVHEGKIIARGFNKRNLKKTTLAHAEILAIEQ 86
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + T YVTLEPC
Sbjct: 87 ASKKLGDWRLEECTMYVTLEPCQMC 111
>gi|89889508|ref|ZP_01201019.1| cytosine/adenosine deaminase [Flavobacteria bacterium BBFL7]
gi|89517781|gb|EAS20437.1| cytosine/adenosine deaminase [Flavobacteria bacterium BBFL7]
Length = 149
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M FM AL+ ++ + V +IV +I +G T HAE
Sbjct: 1 MIEPYDHEYFMKKALQEAQTALDRGEI--PVGAVIVTQNRIIAKGHNLTETLTDVTAHAE 58
Query: 57 VQALEE-----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+QA+ G+ + T YVTLEPC CA + I +V D
Sbjct: 59 MQAITAGASFLGGKYLKDCTLYVTLEPC------QMCAGALYWSQISNIVYGARDEHRGY 112
Query: 112 SGRGLQ 117
G Q
Sbjct: 113 LKMGTQ 118
>gi|229542244|ref|ZP_04431304.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
gi|229326664|gb|EEN92339.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1]
Length = 169
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
+ + D +M A++ + L + +IV D VI HAE+
Sbjct: 1 MENRDEYYMRLAIQEAVKAQRLREV--PIGAVIVLDEKVIAAAHNLRETTQRAAAHAELL 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+E+A E A YVTLEPC
Sbjct: 59 AIEKACEVTGSWRLENAELYVTLEPCPMCS 88
>gi|225011298|ref|ZP_03701754.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium
MS024-3C]
gi|225004554|gb|EEG42520.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium
MS024-3C]
Length = 166
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
DA FM AL + G V L+V + +I RG HAE+QA+
Sbjct: 12 DAYFMKLALAEAAHAFEKGEV----PVGALVVANDRIIARGHNLTEQLTDVTAHAEMQAI 67
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 68 TAAAHHLGGKYLHNCTLYVTLEPCLMC 94
>gi|329938811|ref|ZP_08288207.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
gi|329302302|gb|EGG46194.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045]
Length = 379
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 9/219 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
H+ L AVS D + G + ++G ++V +RA+SDAIL+G GT+ D+P
Sbjct: 1 MPHPHVLLSAAVSLDGFLDDTGPDRLLLSGPEDFDRVDQVRAESDAILIGAGTLRTDNPR 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L + P+++ + L ++ T V E + A
Sbjct: 61 LLVNSPERRAKRVAAGLPEYPLKVTVSASGDLDPAARFWHTGGAKAVYTTEEAAPRLRAA 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ + R + L + + V L+VEGG V + L D + L + +
Sbjct: 121 LPPDVDVVAPGAELRWREVLAHLGEEKDVRRLMVEGGGRVHTELLRQGLADELQLVVAPL 180
Query: 319 VIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
++GE P + G V + Y+
Sbjct: 181 LVGEADAPRMFGTAAYPPGRMRLLETRAVGDVVLMRYVP 219
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQAL 60
++ D R++ A + + T SV ++V DG + RG + GG P HAE AL
Sbjct: 229 TAADRRWLGLACDLAER-CPPSETAFSVGAVVVAADGTELARGFSREGGDPAVHAEEAAL 287
Query: 61 EEAG---EEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRG 115
+ GAT Y +LEPC+ R PCA+ I+ G RRVV +PD V G
Sbjct: 288 AKVAPGDARLAGATVYSSLEPCARRASRPVPCARLILAAGARRVVTAWREPDTFVPGADG 347
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
L+ G V + E
Sbjct: 348 TGVLTAGGAHVVHLPEYAPAARRPNAH 374
>gi|183601156|ref|ZP_02962649.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC
25827]
gi|188019501|gb|EDU57541.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC
25827]
Length = 154
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 6 FDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
D +F+ A+ ++ G +IV+DG V+ GV HAE+
Sbjct: 2 QDKQFLQQAISLAKENVKAGGR-----PFGAVIVRDGAVVATGVNQMLELNDPTAHAELM 56
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL +AGE Y + +PC
Sbjct: 57 ALRQAGETLKRTRLEDCVVYASGQPCPMC 85
>gi|78047755|ref|YP_363930.1| putative cytidine / deoxycytidylate deaminase family protein
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78036185|emb|CAJ23876.1| putative cytidine / deoxycytidylate deaminase family protein
[Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 169
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL+ + P V L+V G V+G G ++ HAE
Sbjct: 10 PHAAIDEHWMRHALQLAERAERDYDEIP-VGALLVDAQGNVLGEGWNFNIASHDPSAHAE 68
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 69 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 99
>gi|229083334|ref|ZP_04215694.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
gi|228699981|gb|EEL52606.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44]
Length = 165
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV DG V+ HAE+ A+
Sbjct: 2 EQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLDGEVVSVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLENATLYVTLEPCPMC 86
>gi|329666788|gb|AEB92736.1| cytosine/adenosine deaminase [Lactobacillus johnsonii DPC 6026]
Length = 160
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCP 53
M ++M A ++ G + ++V KDG VIG G
Sbjct: 1 MLTKEQKEKYMHLAFEQAKKAEEQGEV----PIGAVVVDKDGNVIGEGYNRRELDEDATQ 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
HAE+ A+ +A ++ + ++TLEPC
Sbjct: 57 HAEMIAIRQACKKLNSWRLVDCSLFITLEPCPMCS 91
>gi|289669069|ref|ZP_06490144.1| hypothetical protein XcampmN_11383 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 174
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P S+ D +M AL + P V L+V +G V+G G ++ HAE
Sbjct: 15 PHSAIDLHWMQHALHLAERAERDYDEIP-VGALVVDAEGNVLGEGWNFNIASHDPSAHAE 73
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 74 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 104
>gi|289665842|ref|ZP_06487423.1| hypothetical protein XcampvN_22891 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 174
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P S+ D +M AL + P V L+V +G V+G G ++ HAE
Sbjct: 15 PHSAIDLHWMQHALHLAERAERDYDEIP-VGALVVDAEGNVLGEGWNFNIASHDPSAHAE 73
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 74 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 104
>gi|319638138|ref|ZP_07992901.1| cytidine and deoxycytidylate deaminase [Neisseria mucosa C102]
gi|317400411|gb|EFV81069.1| cytidine and deoxycytidylate deaminase [Neisseria mucosa C102]
Length = 240
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
FM A+ +R +G V +IV G I G HAE+ AL
Sbjct: 93 EAFMRLAIEQARQSAALGEV----PVGAVIVYQGKAIAAAHNTCIGDHNVSHHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
AG+ Y+TLEPC+
Sbjct: 149 AAGKALQNYRLEDCDVYITLEPCAMC 174
>gi|257416518|ref|ZP_05593512.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis
AR01/DG]
gi|257158346|gb|EEU88306.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis
ARO1/DG]
Length = 173
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATSHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|206968817|ref|ZP_03229772.1| cytosine deaminase [Bacillus cereus AH1134]
gi|206735858|gb|EDZ53016.1| cytosine deaminase [Bacillus cereus AH1134]
Length = 169
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPH 54
M D F+ AL + + T V +IV + VI RG H
Sbjct: 1 MKF-ERDRYFLQMALEEAEMALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAH 56
Query: 55 AEVQALEEAGEEARGA-------TAYVTLEPCSHY 82
AE+ A+ AGE A T Y TLEPC
Sbjct: 57 AEIDAIRNAGEAMFDAKIKNEKFTIYSTLEPCPMC 91
>gi|162456661|ref|YP_001619028.1| riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
56']
gi|161167243|emb|CAN98548.1| Riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce
56']
Length = 187
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAE----- 56
+S+ ++M A+ + G T NP V C IV G ++G G T G E
Sbjct: 1 MSNDPEKWMRLAIEEAERARGGTGDNPWVGCAIVSAAGELLGSGHTLGPG----EDHAEI 56
Query: 57 --VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+A G GAT Y TLEPCS +GR+P C++ I+E G+ RVV+ ++DP+ RV G
Sbjct: 57 AAARAAHARGLSVVGATLYSTLEPCSFHGRTPACSRSIVERGVARVVIGMNDPNPRVDGE 116
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G++ L + G+ V + +
Sbjct: 117 GVRILREGGVEVVEGVCEAEIRRQLGSWVIEHHPH 151
>gi|120437789|ref|YP_863475.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
gi|117579939|emb|CAL68408.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
Length = 149
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D FM AL + P V ++V + +I RG T HAE+QA+
Sbjct: 7 DEYFMKKALEEAESA-YEKGEIP-VGVVVVINDKIIARGHNLTETLNDVTAHAEMQAITA 64
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ + T Y+TLEPC
Sbjct: 65 AANFLGGKYLQNCTMYITLEPCQMC 89
>gi|332994184|gb|AEF04239.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
sp. SN2]
Length = 180
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
++M AL + +G V +V +G +IG G T HAE+ A+
Sbjct: 14 HTKWMQHALSLADKAEAMGEV----PVGACVVHNGELIGEGWNTPITDSDPSAHAEMNAV 69
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
A + + AT YVTLEPCS
Sbjct: 70 RMAAKHLQNYRTTDATLYVTLEPCSMC 96
>gi|325281446|ref|YP_004253988.1| CMP/dCMP deaminase zinc-binding protein [Odoribacter splanchnicus
DSM 20712]
gi|324313255|gb|ADY33808.1| CMP/dCMP deaminase zinc-binding protein [Odoribacter splanchnicus
DSM 20712]
Length = 145
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ +M AL+ +R V ++V G +I R HAE+ A+
Sbjct: 2 TTHEYYMHKALQEARQAAEEGEI--PVGAVVVCKGKIIARAHNETEKLNDVTAHAEMLAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC+
Sbjct: 60 TMATSYLGGKYLNECTLYVTMEPCTMC 86
>gi|255037951|ref|YP_003088572.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
gi|254950707|gb|ACT95407.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
Length = 150
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M + + D FM AL + P V L+V +IGRG H
Sbjct: 1 MNIQADITDHFFMEEALALAHKA-YEEGEIP-VGALVVAKDRIIGRGYNQTERLNDVTAH 58
Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
AE+ A+ A + T YVTLEPC CA + ++RVVV D
Sbjct: 59 AEMIAITAAADHLGSKYLTDCTLYVTLEPCV------MCAGALYWTQVKRVVVGAMDEKR 112
Query: 110 RVSGRGLQWLSQKGIIVDRMM 130
S G L K +V +M
Sbjct: 113 GFSRVGQPLLHPKTKLVTGIM 133
>gi|150009165|ref|YP_001303908.1| putative cytosine/adenosine deaminase [Parabacteroides distasonis
ATCC 8503]
gi|255015772|ref|ZP_05287898.1| putative cytosine/adenosine deaminase [Bacteroides sp. 2_1_7]
gi|256841721|ref|ZP_05547227.1| cytosine/adenosine deaminase [Parabacteroides sp. D13]
gi|298377094|ref|ZP_06987048.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
sp. 3_1_19]
gi|149937589|gb|ABR44286.1| putative cytosine/adenosine deaminase [Parabacteroides distasonis
ATCC 8503]
gi|256736615|gb|EEU49943.1| cytosine/adenosine deaminase [Parabacteroides sp. D13]
gi|298266078|gb|EFI07737.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
sp. 3_1_19]
Length = 146
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R G V +IV + +I R HAE+ A+
Sbjct: 6 DEYFMKQALVEARAAASEGEV----PVGAVIVCNNQIIARAHNQTECLNDVTAHAEMLAI 61
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A + + YVT+EPC
Sbjct: 62 TAAAGVLGAKYLTNCSLYVTVEPCIMC 88
>gi|296332941|ref|ZP_06875399.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672716|ref|YP_003864387.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149905|gb|EFG90796.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410959|gb|ADM36077.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 161
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A++ ++ G + ++V + +I R T HAE+
Sbjct: 2 TQDELYMKEAIKEAKKAEEKGEV----PIGAVLVVNDEIIARAHNLRETEQRSIAHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
++EA + GAT YVTLEPC
Sbjct: 58 VIDEACKALGTWRLEGATLYVTLEPCPMC 86
>gi|294635297|ref|ZP_06713796.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
23685]
gi|291091331|gb|EFE23892.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC
23685]
Length = 46
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV 46
M D +++ A +R T+ NP+V C++V+DG ++G G
Sbjct: 1 MSAIHPDEFYLARAFELARRGRFTTTPNPNVGCVLVRDGQIVGEGF 46
>gi|21242782|ref|NP_642364.1| hypothetical protein XAC2038 [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108264|gb|AAM36900.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 169
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL+ + P V ++V G V+G G ++ HAE
Sbjct: 10 PHAAIDVHWMQHALQLAERAERDYDEIP-VGAVLVDAQGNVLGEGWNFNIASHDPSAHAE 68
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ EAG G T YVTLEPC+
Sbjct: 69 IVAMREAGRRLANHRLIGCTLYVTLEPCAMC 99
>gi|325566945|ref|ZP_08143723.1| tRNA-specific adenosine deaminase [Enterococcus casseliflavus
ATCC 12755]
gi|325159117|gb|EGC71262.1| tRNA-specific adenosine deaminase [Enterococcus casseliflavus
ATCC 12755]
Length = 168
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
FM A++ +R G+ + ++V DG +IGRG T HAE+ A+EEA
Sbjct: 14 FFMEEAIKEARKAEGVAEV--PIGAVVVLDGKIIGRGHNLRETQQQAAAHAEMFAIEEAC 71
Query: 65 E-----EARGATAYVTLEPCSHYG 83
A +VTLEPC
Sbjct: 72 RTVGSWRLEQAQLFVTLEPCPMCS 95
>gi|227888770|ref|ZP_04006575.1| nucleoside deaminase [Lactobacillus johnsonii ATCC 33200]
gi|227850607|gb|EEJ60693.1| nucleoside deaminase [Lactobacillus johnsonii ATCC 33200]
Length = 160
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCP 53
M ++M A ++ G + ++V KDG VIG G
Sbjct: 1 MLTKEQKEKYMHLAFEQAKKAEEQGEV----PIGAVVVDKDGNVIGEGYNRRELDEDATQ 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
HAE+ A+ +A ++ + ++TLEPC
Sbjct: 57 HAEMIAIRQACKKLNSWRLVDCSLFITLEPCPMCS 91
>gi|194289718|ref|YP_002005625.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
19424]
gi|193223553|emb|CAQ69558.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG
19424]
Length = 194
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
DAR+M AAL +R G V ++V + +I RG HAE+Q
Sbjct: 24 ERDARYMRAALEEARLAEAAGEV----PVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQ 79
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
AL A + YVTLEPC+
Sbjct: 80 ALRAAAQVIGNYRMPECELYVTLEPCAMCS 109
>gi|229496208|ref|ZP_04389928.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
endodontalis ATCC 35406]
gi|229316786|gb|EEN82699.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
endodontalis ATCC 35406]
Length = 151
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
+ + D R M AAL + G + ++V G ++GRG HA
Sbjct: 6 SIQTEDERAMRAALDEAYLAKEAGEV----PIGAVVVYQGRIVGRGRNRVEQLQDPTAHA 61
Query: 56 EVQALEEAGEE-----ARGATAYVTLEPCSHY 82
E+ A+ A E T YV+LEPC
Sbjct: 62 EILAITAATENLGAKYLTDCTLYVSLEPCVMC 93
>gi|29469223|gb|AAO65336.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
murayamaensis]
Length = 226
Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/219 (21%), Positives = 75/219 (34%), Gaps = 11/219 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ L AVS D + + ++ ++V RA +DAILVG T+ D+P L
Sbjct: 5 PYVVLSAAVSLDGRLDDTSRDRLVLSNRRDLDRVDDERAAADAILVGATTLRRDNPRLLV 64
Query: 210 RLNGLQEHSPMRIILDPHFKLS-------LDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + + K++ S ++ +
Sbjct: 65 ASADRRARRVALGMPEHPLKVTVTGSAEVNTSYAFWHCGGEKLVFTVDGALLRARRTVGD 124
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ D LL L RGV LLVEGG V + L D + L + +++GE
Sbjct: 125 LADVVSTGPALDWHLLLDELGRRGVERLLVEGGGTVHTQLLAQDLADELHLVVAPLLVGE 184
Query: 323 GGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGK 357
G P L G + G V L Y K
Sbjct: 185 AGAPVFLGPASYPGGPAARMTLLEARPVGDVVLLRYAPK 223
>gi|126697581|ref|YP_001086478.1| putative cytosine/adenosine deaminase [Clostridium difficile 630]
gi|254973665|ref|ZP_05270137.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-66c26]
gi|255091056|ref|ZP_05320534.1| putative cytosine/adenosine deaminase [Clostridium difficile CIP
107932]
gi|255099172|ref|ZP_05328149.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-63q42]
gi|255312710|ref|ZP_05354293.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-76w55]
gi|255515470|ref|ZP_05383146.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-97b34]
gi|255648562|ref|ZP_05395464.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-37x79]
gi|255654097|ref|ZP_05399506.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-23m63]
gi|260681784|ref|YP_003213069.1| putative cytosine/adenosine deaminase [Clostridium difficile
CD196]
gi|260685381|ref|YP_003216514.1| putative cytosine/adenosine deaminase [Clostridium difficile
R20291]
gi|296452478|ref|ZP_06894177.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296878246|ref|ZP_06902256.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
gi|306518691|ref|ZP_07405038.1| putative cytosine/adenosine deaminase [Clostridium difficile
QCD-32g58]
gi|115249018|emb|CAJ66829.1| transfer RNA specific adenosine deaminase [Clostridium difficile]
gi|260207947|emb|CBA60067.1| putative cytosine/adenosine deaminase [Clostridium difficile
CD196]
gi|260211397|emb|CBE01470.1| putative cytosine/adenosine deaminase [Clostridium difficile
R20291]
gi|296258684|gb|EFH05580.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296430754|gb|EFH16591.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
Length = 151
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
+M AL+ + + +IVKD +I R T HAE+ A+++A
Sbjct: 5 FYMKEALKEAYKAYNK--KETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQAS 62
Query: 65 EEARG-----ATAYVTLEPCSHYG 83
E+ G YVT+EPC
Sbjct: 63 EKLGGWRLTDCDLYVTMEPCIMCS 86
>gi|81427949|ref|YP_394948.1| putative cytidine deaminase [Lactobacillus sakei subsp. sakei
23K]
gi|78609590|emb|CAI54636.1| Putative cytidine deaminase [Lactobacillus sakei subsp. sakei
23K]
Length = 172
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
+ D +M A+ + G + +IVKDG +IGRG A HAE+
Sbjct: 6 TEIDQ-WMQVAIDEANQARIIGEV----PIGAVIVKDGQIIGRGHNIREHAQDATLHAEI 60
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A++EA +VTLEPC
Sbjct: 61 IAIQEACMVEKSWRLEDTAIFVTLEPCPMC 90
>gi|22297721|ref|NP_680968.1| putative cytidine or deoxycytidylate [Thermosynechococcus
elongatus BP-1]
gi|22293898|dbj|BAC07730.1| tlr0177 [Thermosynechococcus elongatus BP-1]
Length = 164
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
+ +M A+ + G P V +IV + +I G HAE+
Sbjct: 10 TDPHDFWMQQAIALAEQA-GAADEVP-VGAVIVSAENELIATGENRRQRDHDPTAHAEII 67
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
AL AG+ G YVTLEPC
Sbjct: 68 ALRRAGQRLGTWYLTGCRLYVTLEPCPMC 96
>gi|206603205|gb|EDZ39685.1| Putative zinc-binding cytidine/deoxycytidylate deaminase
[Leptospirillum sp. Group II '5-way CG']
Length = 162
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNP-SVACLIVK-DGIVIGRGVTAYGG----CPHAEVQ 58
+ D R+M+ AL ++ + N + L+V +G V+GRG G HAE+
Sbjct: 10 NMDERWMTEALSEAKTAM---KKNEIPIGALLVDGNGTVLGRGHNQRIGSMDPTAHAEIV 66
Query: 59 ALEEAG-----EEARGATAYVTLEPCSHY 82
AL +G G T YVT+EPC
Sbjct: 67 ALRSSGLHVKNYRLPGTTLYVTVEPCLMC 95
>gi|42518517|ref|NP_964447.1| hypothetical protein LJ0422 [Lactobacillus johnsonii NCC 533]
gi|41582802|gb|AAS08413.1| hypothetical protein LJ_0422 [Lactobacillus johnsonii NCC 533]
Length = 160
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCP 53
M ++M A ++ G + ++V KDG VIG G
Sbjct: 1 MLTKEQKEKYMHLAFEQAKKAEEQGEV----PIGAVVVDKDGNVIGEGYNRRELDEDATQ 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
HAE+ A+ +A + + ++TLEPC
Sbjct: 57 HAEMIAIRQACKNLNSWRLVDCSLFITLEPCPMCS 91
>gi|154484290|ref|ZP_02026738.1| hypothetical protein EUBVEN_02003 [Eubacterium ventriosum ATCC
27560]
gi|149734767|gb|EDM50684.1| hypothetical protein EUBVEN_02003 [Eubacterium ventriosum ATCC
27560]
Length = 178
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
++M A++ ++ G + C+IV +IGRG HAE+ A+++
Sbjct: 29 KYMKEAIKQAKKAASIGEV----PIGCVIVYQDKIIGRGYNRRMVDKNTLSHAELNAIKK 84
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + YVT EPC
Sbjct: 85 ASKKLDDWRLDDCELYVTTEPCQMC 109
>gi|77361256|ref|YP_340831.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
TAC125]
gi|76876167|emb|CAI87389.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis
TAC125]
Length = 168
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D +M AL +++ L V ++VKD ++ G T HAE
Sbjct: 1 MNEPFDDNYWMQQALTYAKQAEQLDEI--PVGAILVKDNQLVAAGYNRSITDNDPSAHAE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ A+ + G+ T YVTLEPCS
Sbjct: 59 MMAVRKGGKALNNYRLIDCTLYVTLEPCSMC 89
>gi|313677068|ref|YP_004055064.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
gi|312943766|gb|ADR22956.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
Length = 152
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
M ++ + D FM ALR + P V ++V +I + HA
Sbjct: 1 MELTVNSDEHFMREALRQAEIA-YEEGEIP-VGAVVVCQKKIIAKAYNQTERLNDVTAHA 58
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ A+ A G+ T YV+LEPC
Sbjct: 59 EMLAITSAANHLGGKYLTDCTLYVSLEPCGMC 90
>gi|291482388|dbj|BAI83463.1| hypothetical protein BSNT_00036 [Bacillus subtilis subsp. natto
BEST195]
Length = 161
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A++ ++ G + ++V + +I R T HAE+
Sbjct: 2 TQDELYMKEAIKEAKKAEEKGEV----PIGAVLVVNDEIIARAHNLRETEQRSIAHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
++EA + GAT YVTLEPC
Sbjct: 58 VIDEACKALGTWRLEGATLYVTLEPCPMC 86
>gi|169599362|ref|XP_001793104.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
gi|111069591|gb|EAT90711.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15]
Length = 265
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
++ RFM A+ + + S V C+ VKDG +IGRG+ G HAE A+
Sbjct: 68 AYHERFMREAIAMAELAL--KSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 125
Query: 61 -----EEAGEEARGATAYVTLEPCSHY 82
+ + YVT+EPC
Sbjct: 126 AGILSKSPVKILNETDLYVTVEPCVMC 152
>gi|225847988|ref|YP_002728151.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643800|gb|ACN98850.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 157
Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
+ + +F+ A++ + + G V ++VKD V+ +G HAE
Sbjct: 1 MKEINTKFIELAIKEAEKALKKGEV----PVGAVLVKDDKVVSKGYNLRISKKNALYHAE 56
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+E A ++ + Y TLEPC
Sbjct: 57 IVAIERACKKLKSWRLDDTVLYTTLEPCLMC 87
>gi|255972217|ref|ZP_05422803.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
gi|255963235|gb|EET95711.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
Length = 102
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|116331682|ref|YP_801400.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116125371|gb|ABJ76642.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 432
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 16 RFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGA 70
+ S G +S NP V+CLI V + ++ +G T+ G PHAE A + G
Sbjct: 14 KLSFLSTGESSPNPPVSCLITDVDNARILAKGRTSPTGGPHAERNAYYEFVKNGFFKEPH 73
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRM 129
+VTLEPC+H G++PPC I+E + + DP+ GL+ ++GI+V
Sbjct: 74 NVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRGILVVAE 133
Query: 130 M--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ L +++R K+ + LK A+S++ V +G IS + +LR
Sbjct: 134 PGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNHLTSILR 193
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE 216
A+ DA+LVG GT+ D+P L R+
Sbjct: 194 AKCDAVLVGPGTLFHDNPGLEFRIGENWP 222
>gi|229070516|ref|ZP_04203757.1| Cytosine deaminase [Bacillus cereus F65185]
gi|228712598|gb|EEL64532.1| Cytosine deaminase [Bacillus cereus F65185]
Length = 169
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPH 54
M D F+ AL + + T V +IV + VI RG H
Sbjct: 1 MHF-ERDRYFLEMALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAH 56
Query: 55 AEVQALEEAGEEARGA-------TAYVTLEPCSHY 82
AE+ A+ AGE A T Y TLEPC
Sbjct: 57 AEIDAIRNAGEAMFDAKIKNEKFTIYSTLEPCPMC 91
>gi|167755137|ref|ZP_02427264.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
gi|167705187|gb|EDS19766.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402]
Length = 177
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A + + L V +IVKDG +I G T+ HAE+ A+
Sbjct: 27 DQDLEFMEIAYQEALK--CLDMDEVPVGAVIVKDGKIIACGRNLRETSKRATAHAEIIAI 84
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
EEA T YVTLEPC
Sbjct: 85 EEACRTLNSWYLDECTLYVTLEPCVMCS 112
>gi|261407450|ref|YP_003243691.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
gi|261283913|gb|ACX65884.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
Length = 159
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 3 VSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+S +M A+ + +V P ++VKDG VIGRG HAEV
Sbjct: 1 MSDHNHEYWMHQAIAEAHRNVQHVEGGP-FGAIVVKDGQVIGRGRNLVTALNDPTAHAEV 59
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
QA+ EA + +G T Y + EPC
Sbjct: 60 QAIREACLHLEDFQLKGCTIYTSCEPCPMC 89
>gi|325954716|ref|YP_004238376.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
16922]
gi|323437334|gb|ADX67798.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
16922]
Length = 146
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D FM AL+ ++ V LIV +I + T HAE
Sbjct: 1 MENIFSDEYFMRKALQEAQVAFDRDEI--PVGALIVSQNKIIAKTHNLTETLTDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QA+ A G+ + T YVTLEPC
Sbjct: 59 MQAITSAANYLGGKYLKDCTLYVTLEPCVMC 89
>gi|237733437|ref|ZP_04563918.1| tRNA-adenosine deaminase [Mollicutes bacterium D7]
gi|229383472|gb|EEO33563.1| tRNA-adenosine deaminase [Coprobacillus sp. D7]
Length = 152
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A + + L V +IVKDG +I G T+ HAE+ A+
Sbjct: 2 DQDLEFMEIAYQEALK--CLDMDEVPVGAVIVKDGKIIACGRNLRETSKRATAHAEIIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
EEA T YVTLEPC
Sbjct: 60 EEACRTLNSWYLDECTLYVTLEPCVMCS 87
>gi|323136503|ref|ZP_08071585.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
gi|322398577|gb|EFY01097.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
Length = 189
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
PV + D R+M AL + +I K G V+ G + H E+
Sbjct: 41 PVRADDERYMRIALDEAARGDF------PFGAVIEKGGRVLATGHNSGKSTNDPTAHGEM 94
Query: 58 QALEE-----AGEEARGATAYVTLEPCSHY 82
A+ E GAT Y T EPC
Sbjct: 95 VAIRNFIKSHPSAELNGATIYTTGEPCPMC 124
>gi|268318938|ref|YP_003292594.1| hypothetical protein FI9785_445 [Lactobacillus johnsonii FI9785]
gi|262397313|emb|CAX66327.1| conserved hypothetical proteins [Lactobacillus johnsonii FI9785]
Length = 160
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCP 53
M ++M A ++ G + ++V KDG VIG G
Sbjct: 1 MLTKEQKEKYMHLAFEQAKKAEEQGEV----PIGAVVVDKDGNVIGEGYNRRELDEDATQ 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
HAE+ A+ +A ++ + ++TLEPC
Sbjct: 57 HAEMIAIRQACKKLNSWRLVDCSLFITLEPCPMCS 91
>gi|251772814|gb|EES53374.1| putative zinc-binding cytidine/deoxycytidylate deaminase
[Leptospirillum ferrodiazotrophum]
Length = 158
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM+ AL +R + + V ++V G ++G GV + HAE+ AL
Sbjct: 12 DVYFMNKALNLARNGI---VDDVPVGAIVVVGGEIVGEGVNQGRASHDPTAHAEIIALRR 68
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
A +T YVTLEPC
Sbjct: 69 AAARLENYRLPLSTLYVTLEPCLMC 93
>gi|261392718|emb|CAX50291.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 8013]
Length = 239
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 93 EHFMCEALRQAEQSSADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 149 QAGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|255975330|ref|ZP_05425916.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
gi|307281893|ref|ZP_07562108.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0860]
gi|255968202|gb|EET98824.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
gi|306503847|gb|EFM73069.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX0860]
Length = 173
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA
Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGSVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 72 CRGIENWRLEETQLFVTLEPCPMCS 96
>gi|89892755|ref|YP_516242.1| hypothetical protein DSY0009 [Desulfitobacterium hafniense Y51]
gi|219666080|ref|YP_002456515.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
DCB-2]
gi|89332203|dbj|BAE81798.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536340|gb|ACL18079.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
DCB-2]
Length = 148
Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+M AL + G + ++V G +I R HAEV A+
Sbjct: 3 HQDYMRLALEEAEIAFAQGEV----PIGAVVVHKGEIIARAHNEKELRQDPTAHAEVLAV 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ A + AT YVTLEPC
Sbjct: 59 QRATQALGIWRLSEATLYVTLEPCPMC 85
>gi|315652559|ref|ZP_07905540.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM
3986]
gi|315485188|gb|EFU75589.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM
3986]
Length = 157
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
D F+ A++ ++ + G + C+IV + +I RG HAE+ A+
Sbjct: 4 DDYFLKEAVKQAKKALSIGDV----PIGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + T Y+TLEPC
Sbjct: 60 KKACKKMGDWRLEDCTMYITLEPCPMC 86
>gi|331003430|ref|ZP_08326929.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412476|gb|EGG91865.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 155
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
D F+ A++ ++ G P + C+IV + +I RG HAE+ A+
Sbjct: 2 DRDNYFLKEAVKQAKKA-GEIGDVP-IGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + T Y+TLEPC
Sbjct: 60 KKACKKIGDWRLEDCTMYITLEPCPMC 86
>gi|313206574|ref|YP_004045751.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
DSM 15868]
gi|312445890|gb|ADQ82245.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
DSM 15868]
gi|315023430|gb|EFT36438.1| tRNA-specific adenosine-34 deaminase [Riemerella anatipestifer
RA-YM]
gi|325335978|gb|ADZ12252.1| Cytosine/adenosine deaminase [Riemerella anatipestifer RA-GD]
Length = 143
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D FM A + + V C+IV + VI RG T HAE+Q++
Sbjct: 4 DEYFMRMAFQEALIAFEK--DEVPVGCVIVHNERVIARGYNLTETLNDVTAHAEMQSITS 61
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVTLEPC+
Sbjct: 62 AANALGGKYLKDCTMYVTLEPCTMC 86
>gi|124516363|gb|EAY57871.1| putative zinc-binding cytidine/deoxycytidylate deaminase
[Leptospirillum rubarum]
Length = 164
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
+ D R+M+ AL ++ + + ++V +G V+GRG G HAE+ A
Sbjct: 10 NMDERWMTEALSEAKTAMEKNEI--PIGAILVDANGTVLGRGHNQRVGSTDPTAHAEIVA 67
Query: 60 LEEAG-----EEARGATAYVTLEPCSHY 82
L +G G T YVT+EPC
Sbjct: 68 LRTSGLHVKNYRLPGTTLYVTVEPCLMC 95
>gi|329957514|ref|ZP_08297989.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides clarus YIT 12056]
gi|328522391|gb|EGF49500.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides clarus YIT 12056]
Length = 144
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 19/133 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
++ D +M AL ++ G P V ++V +I R T HAE+Q
Sbjct: 1 MTDTD--YMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQ 56
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A G+ T YVT+EPC CA I R+V +D
Sbjct: 57 AITAAAATLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGRLVFGAEDEKRGYQR 110
Query: 114 RGLQWLSQKGIIV 126
Q L K +V
Sbjct: 111 YAPQALHPKTSVV 123
>gi|319789432|ref|YP_004151065.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Thermovibrio ammonificans HB-1]
gi|317113934|gb|ADU96424.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Thermovibrio ammonificans HB-1]
Length = 220
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 9/195 (4%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + + +H +RA+ D I+VG TV D+P LT R +P+R+I
Sbjct: 27 KEIMKLMDDEANRYLHAVRAECDGIMVGANTVRIDNPNLTVRYVE--GKNPIRVIPTSTG 84
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRG 286
+ LD+ ++ T + +I V+E AF+++ + + + LL +L RG
Sbjct: 85 DIPLDANVLNTEVAPTIIAVSERAPKEKVEAFKERGAEVLVAGKEKIEFPLLLKLLKERG 144
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCV 341
+ L+VEGG+AV I + LVD I L +++G +PS + + K F
Sbjct: 145 IEKLMVEGGSAVNWELIKNDLVDEIRLIHLPVIVGGDDVPSLVSGEGFKTLSAVKRFKIK 204
Query: 342 RRDYFGSDVCLEYIG 356
R G+ V E+
Sbjct: 205 RVFRCGNQVITEFER 219
>gi|326392730|ref|ZP_08214020.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
JW 200]
gi|325991229|gb|EGD49931.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus
JW 200]
Length = 46
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
M AL+ + G T+ NP V +IVK+G +IG G Y G P
Sbjct: 1 MKRALKLTEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGP 43
>gi|224538014|ref|ZP_03678553.1| hypothetical protein BACCELL_02903 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520361|gb|EEF89466.1| hypothetical protein BACCELL_02903 [Bacteroides cellulosilyticus
DSM 14838]
Length = 144
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D +M AL +R G V ++V +I R T HAE+QA
Sbjct: 2 DDNYYMKQALIEARKASERGEV----PVGAVVVCKDRIIARAHNLTETLTDVTAHAEMQA 57
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ T YVT+EPC
Sbjct: 58 ITAAASTLGGKYLNECTLYVTVEPCVMC 85
>gi|313889859|ref|ZP_07823501.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus pseudoporcinus SPIN 20026]
gi|313121904|gb|EFR45001.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus pseudoporcinus SPIN 20026]
Length = 174
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM AL+ + + + C+IVKDG +IGRG A HAE+ A+ EA
Sbjct: 10 EFFMREALKEAEKSL--VKAEIPIGCVIVKDGKIIGRGHNAREELNQAIMHAEIMAINEA 67
Query: 64 GEEARG-----ATAYVTLEPCSHYG 83
+ + +VT+EPC
Sbjct: 68 NAHEKNWRLLETSLFVTIEPCVMCS 92
>gi|239630121|ref|ZP_04673152.1| tRNA-adenosine deaminase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067271|ref|YP_003789294.1| cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
gi|239527733|gb|EEQ66734.1| tRNA-adenosine deaminase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439678|gb|ADK19444.1| Cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
Length = 168
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
+ D +FM AAL ++ G + +IV G +IGRG T HA
Sbjct: 1 MDEHDINQFMDAALTEAKKAAAIGEV----PIGAVIVHQGEIIGRGYNLRETTQDATHHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A++ A + + +VTLEPC
Sbjct: 57 EMLAIQAACKTLGTWRLEDCSLFVTLEPCPMC 88
>gi|293367940|ref|ZP_06614578.1| tRNA-specific adenosine deaminase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291317969|gb|EFE58377.1| tRNA-specific adenosine deaminase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737844|gb|EGG74076.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis VCU045]
Length = 168
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M A+ + +G + +IVK+G VI R T HAE A+E
Sbjct: 5 HDYMRLAINEAHKAKALGEV----PIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIE 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 61 RASEVVGSWRLEECTLYVTLEPCVMC 86
>gi|284049062|ref|YP_003399401.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus
fermentans DSM 20731]
gi|283953283|gb|ADB48086.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus
fermentans DSM 20731]
Length = 159
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D FM AL +R V ++V+DG V+ R HAE + +
Sbjct: 14 DVHFMEMALEEARQAAREGEI--PVGAVLVRDGQVLARDHNRREQDRDATAHAEFLVIRQ 71
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A T YVTLEPC
Sbjct: 72 ACRLLRRWRLSDTTLYVTLEPCPMC 96
>gi|191639204|ref|YP_001988370.1| Putative Cytidine/deoxycytidylate deaminase, zinc-binding region
YaaJ [Lactobacillus casei BL23]
gi|227533725|ref|ZP_03963774.1| zinc-binding cytidine/deoxycytidylate deaminase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|190713506|emb|CAQ67512.1| Putative Cytidine/deoxycytidylate deaminase, zinc-binding region
YaaJ [Lactobacillus casei BL23]
gi|227188709|gb|EEI68776.1| zinc-binding cytidine/deoxycytidylate deaminase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|327383282|gb|AEA54758.1| Nucleoside deaminase [Lactobacillus casei LC2W]
gi|327386465|gb|AEA57939.1| Nucleoside deaminase [Lactobacillus casei BD-II]
Length = 168
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
+ D +FM AAL ++ G + +IV G +IGRG T HA
Sbjct: 1 MDEHDINQFMDAALTEAKKAAAIGEV----PIGAVIVHQGEIIGRGYNLRETTQDATHHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A++ A + + +VTLEPC
Sbjct: 57 EMLAIQAACKTLGTWRLEDCSLFVTLEPCPMC 88
>gi|259048082|ref|ZP_05738483.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC
49175]
gi|259035143|gb|EEW36398.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC
49175]
Length = 168
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + FM AL+ ++ + ++V +G +IGRG HAE
Sbjct: 1 MELQEK-EFFMREALKEAQKAYDQ--EEVPIGAVVVLNGEIIGRGHNLREKEQDATLHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
++A+ +A + +VTLEPC
Sbjct: 58 IKAIRQANQHLGSWRLEDCELFVTLEPCPMCS 89
>gi|304398612|ref|ZP_07380484.1| CMP/dCMP deaminase zinc-binding [Pantoea sp. aB]
gi|304353823|gb|EFM18198.1| CMP/dCMP deaminase zinc-binding [Pantoea sp. aB]
Length = 155
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65
M AL +R + V ++V++ VIG G G HAE+ AL + G+
Sbjct: 1 MRHALGLARRAWEQSEV--PVGAVLVQNDQVIGEGWNRPIGQHDPTAHAEIMALRQGGKV 58
Query: 66 ----EARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 LENYRLLDTTLYVTLEPCVMC 79
>gi|91772283|ref|YP_564975.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
6242]
gi|91711298|gb|ABE51225.1| Guanine deaminase [Methanococcoides burtonii DSM 6242]
Length = 159
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM AA++ ++ + + +IVKD +I +G G HAE+ A+ +A
Sbjct: 7 EYFMDAAVKEAQKGM-RNNEGGPFGAVIVKDDTIISKGHNEVLGTNDPSAHAEIVAIRKA 65
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G Y T PC
Sbjct: 66 SAALEDFDLSGCELYATTMPCPMC 89
>gi|304383698|ref|ZP_07366157.1| tRNA-specific adenosine deaminase [Prevotella marshii DSM 16973]
gi|304335222|gb|EFM01493.1| tRNA-specific adenosine deaminase [Prevotella marshii DSM 16973]
Length = 160
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
+ D FM AL + P V +IV G ++ R T + HAE+QA
Sbjct: 17 TKTDEAFMRKALAEAEMA-FEEGEIP-VGAIIVCKGRILSRAHNLTETLHDVTAHAEMQA 74
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ G T YVT+EPC
Sbjct: 75 ITAAADALGGKYLTGCTLYVTVEPCPMC 102
>gi|329928171|ref|ZP_08282117.1| guanine deaminase [Paenibacillus sp. HGF5]
gi|328938048|gb|EGG34447.1| guanine deaminase [Paenibacillus sp. HGF5]
Length = 188
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 3 VSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+S +M A+ + +V P ++VKDG VIGRG HAEV
Sbjct: 30 MSDHNHEYWMHQAIAEAHRNVQHVEGGP-FGAIVVKDGQVIGRGRNLVTALNDPTAHAEV 88
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
QA+ EA + +G T Y + EPC
Sbjct: 89 QAIREACLHLEDFQLKGCTIYTSCEPCPMC 118
>gi|319946112|ref|ZP_08020360.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
700641]
gi|319747758|gb|EFW00004.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC
700641]
Length = 170
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C+IVKDG +IGRG A HAEV A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHEEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEVMAIEEA 67
Query: 64 GEEAR-----GATAYVTLEPCSHYG 83
++ + T +VT+EPC
Sbjct: 68 NQKEKSWRLLDTTLFVTIEPCVMCS 92
>gi|27467245|ref|NP_763882.1| Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
12228]
gi|27314788|gb|AAO03924.1|AE016745_23 Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC
12228]
gi|329734672|gb|EGG70979.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis VCU028]
Length = 168
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M A+ + +G + +IVK+G VI R T HAE A+E
Sbjct: 5 HDYMRLAINEAHKAKALGEV----PIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIE 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 61 RASEVVGSWRLEECTLYVTLEPCVMC 86
>gi|298571687|gb|ADI87839.1| hypothetical protein AKSOIL_0331 [uncultured bacterium Ak20-3]
Length = 156
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
P S FM L + + + +IV DG +I HAE+
Sbjct: 3 PESKNHEYFMKRCLELAHEA--EKNLEVPIGAVIVHDGKIISESSNKREKNHDATGHAEI 60
Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A ++ + YVTLEPC
Sbjct: 61 LAIHDACQKLQSWRLSACDLYVTLEPCLMC 90
>gi|289582726|ref|YP_003481192.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Natrialba magadii ATCC 43099]
gi|289532279|gb|ADD06630.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Natrialba magadii ATCC 43099]
Length = 220
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 11/219 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209
H+ + A+S D + + I+G ++V LRA SDA++VG+GTVLADDP LT
Sbjct: 2 HVVVNAAMSADGKLSSRRREQIAISGDADFDRVDRLRADSDAVVVGVGTVLADDPHLTVK 61
Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
R + +P R+++D + ++++ A V + A
Sbjct: 62 DENLRDERRTNGKPANPARVVVDSSARTPSSAEVLDDAATTYVCVSDAAPVEQRAALAEH 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
++ + DL + L +G+ ++VEGG + S + LVD + ++ VIG
Sbjct: 122 ADLITAGEERVDLLRAFAALQEQGIERVMVEGGGELIFSLFEAGLVDDLSVFVGPKVIGG 181
Query: 323 GGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEYIGKN 358
P+ + +NF + V L + +
Sbjct: 182 RDAPTLADGDGFVENFPELELGEVERLDGGVLLTWRVAD 220
>gi|59801336|ref|YP_208048.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
gi|194098422|ref|YP_002001481.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
gi|240080887|ref|ZP_04725430.1| putative cytosine deaminase [Neisseria gonorrhoeae FA19]
gi|240117796|ref|ZP_04731858.1| putative cytosine deaminase [Neisseria gonorrhoeae PID1]
gi|240125599|ref|ZP_04738485.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-92-679]
gi|268597004|ref|ZP_06131171.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
gi|268603495|ref|ZP_06137662.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
gi|268684187|ref|ZP_06151049.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
SK-92-679]
gi|59718231|gb|AAW89636.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090]
gi|193933712|gb|ACF29536.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945]
gi|268550792|gb|EEZ45811.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19]
gi|268587626|gb|EEZ52302.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1]
gi|268624471|gb|EEZ56871.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae
SK-92-679]
Length = 239
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM ALR + G V +IV DG +I HAE+ AL +
Sbjct: 94 YFMREALRQAEQSAADGEI----PVGAVIVSDGKIITSAHNTCIADCNVSRHAEINALAQ 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGSEMQNYRLDGCDIYITLEPCAMC 174
>gi|255304952|ref|ZP_05349126.1| putative cytosine/adenosine deaminase [Clostridium difficile ATCC
43255]
Length = 151
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
+M AL+ + + +IVKD +I R T HAE+ A+++A
Sbjct: 5 FYMKEALKEAYKAYNK--KETPIGAIIVKDNQIIARAHNLTETLKDSTAHAEILAIKQAS 62
Query: 65 EEARG-----ATAYVTLEPCSHYG 83
E+ G YVT+EPC
Sbjct: 63 EKLGGWRLTDCDLYVTMEPCIMCS 86
>gi|145637247|ref|ZP_01792908.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittHH]
gi|145269499|gb|EDK09441.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittHH]
Length = 60
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV 46
SS D FM AL + T+ NPSV C++VK+G ++G+
Sbjct: 3 EFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGKAF 47
>gi|332519171|ref|ZP_08395638.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
gi|332045019|gb|EGI81212.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
Length = 149
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M D FM AL+ + G V +IV + +I R H
Sbjct: 1 MINPYDDNYFMKKALQEAEVAFDKGEI----PVGAVIVIENRIIARAHNLTELLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ + T YVTLEPC
Sbjct: 57 AEMQAITAAANFLGGKYLKNCTLYVTLEPCQMC 89
>gi|146179283|ref|XP_001470903.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|146144561|gb|EDK31523.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 160
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + F+ A++ + V +T C+IV+DG +I R Y HAE
Sbjct: 1 MEQMNDHQYFIQEAIKEAELAV-ITGDGEPFGCVIVRDGKIIVRAHNRLYIDYDPTAHAE 59
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
A+ A ++ + Y + +PC +
Sbjct: 60 TVAIRLACKQEKSLILKDCIIYASAQPCPMCSTAISACGAKEVYYC 105
>gi|317475163|ref|ZP_07934430.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
gi|316908616|gb|EFV30303.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
Length = 144
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D +M AL ++ G V ++V VI R T HAE+QA
Sbjct: 2 DDNYYMKQALLEAQKAGDRGEV----PVGAVVVCKDRVIARAHNLTETLTDVTAHAEMQA 57
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I R+V +D
Sbjct: 58 ITAAASTLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGRLVFGAEDEKRGYQRY 111
Query: 115 GLQWLSQKGIIV 126
L K ++V
Sbjct: 112 APHALHPKTVVV 123
>gi|329729486|gb|EGG65889.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis VCU144]
Length = 168
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M A+ + +G + +IVK+G VI R T HAE A+E
Sbjct: 5 HDYMRLAINEAHKAKALGEV----PIGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIE 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 61 RASEVVGSWRLEECTLYVTLEPCVMC 86
>gi|46370356|gb|AAS89964.1| deaminase [Agrobacterium vitis]
Length = 149
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M +++ RFM AL +R G + ++VKDG+++ + H
Sbjct: 1 MTLTT---RFMDVALEEARLAGARGEV----PIGAVLVKDGVILAQAGNETRALQDVTAH 53
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ A E GA YVTLEPC+
Sbjct: 54 AEILAIRRACTILEDERLAGADLYVTLEPCTMC 86
>gi|228989231|ref|ZP_04149225.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
12442]
gi|228995414|ref|ZP_04155085.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
gi|229003028|ref|ZP_04160886.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
gi|228758228|gb|EEM07415.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4]
gi|228764340|gb|EEM13216.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17]
gi|228770506|gb|EEM19076.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM
12442]
Length = 165
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ P + +IV G VI HAE+ A+
Sbjct: 2 EQDIYFMQLAIEEAKKAE-EIQEVP-IGAVIVLGGEVISVAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + AT YVTLEPC
Sbjct: 60 DEACKKLGTWRLENATLYVTLEPCPMC 86
>gi|159794935|pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
MP S FM AL+ S + + C+IVKDG +IGRG A HA
Sbjct: 9 MPYSLEEQTYFMQEALKESEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHA 66
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA T +VT+EPC
Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPCVMCS 99
>gi|116874087|ref|YP_850868.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742965|emb|CAK22089.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 156
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALAEAEKAQEIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + GA YVTLEPC
Sbjct: 61 ACKHQNSWRLSGAELYVTLEPCPMCS 86
>gi|30021149|ref|NP_832780.1| cytosine deaminase [Bacillus cereus ATCC 14579]
gi|29896702|gb|AAP09981.1| Cytosine deaminase [Bacillus cereus ATCC 14579]
Length = 169
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPH 54
M D F+ AL + + T V +IV + VI RG H
Sbjct: 1 MNF-ERDRYFLQMALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPEKDITAH 56
Query: 55 AEVQALEEAGEEARGA-------TAYVTLEPCSHY 82
AE+ A+ AGE A T Y TLEPC
Sbjct: 57 AELDAIRNAGEAMFDAKIKNERFTIYSTLEPCPMC 91
>gi|325917446|ref|ZP_08179655.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
gi|325536320|gb|EGD08107.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937]
Length = 171
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL+ + P V +++ +G V+G G ++ HAE
Sbjct: 12 PQAAIDTHWMQHALQLAERAERDYDEIP-VGAVLIDAEGQVLGEGWNYNIASHDPSAHAE 70
Query: 57 VQALEE-----AGEEARGATAYVTLEPCSHY 82
+ A+ E A G T YVTLEPC+
Sbjct: 71 IMAMREGGRRLANHRLIGCTLYVTLEPCAMC 101
>gi|315605309|ref|ZP_07880353.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315312989|gb|EFU61062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 451
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEAG- 64
M AL + T P V ++V G +IGRG G HAEV AL EAG
Sbjct: 1 MGKALFLANRAR-ETGDVP-VGAVVVDAGGRIIGRGWNCREGHHDPTGHAEVVALREAGC 58
Query: 65 ----EEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ALGTWRLTGCTLVVTLEPCTMC 80
>gi|307243435|ref|ZP_07525591.1| putative thiamine-phosphate pyrophosphorylase [Peptostreptococcus
stomatis DSM 17678]
gi|306493159|gb|EFM65156.1| putative thiamine-phosphate pyrophosphorylase [Peptostreptococcus
stomatis DSM 17678]
Length = 391
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FMS AL+ +R + ++V DG ++GRG HAE+ A++EA
Sbjct: 243 YFMSEALKEARKA--YAMKETPIGAVVVYDGQIVGRGFNQVELTGDPTQHAEMVAIQEAA 300
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 301 KALGRWRLYDCQMYVTMEPCLMC 323
>gi|291287100|ref|YP_003503916.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290884260|gb|ADD67960.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 158
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
+ D FM+ A++ + G + ++V +G VIGRG HAE
Sbjct: 4 FTEQDIFFMNEAVKEAEGAAAKGEV----PIGAVVVSEGAVIGRGSNKKNSGKSALNHAE 59
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
+ A+E+A T YVTLEPC
Sbjct: 60 IIAIEDASSKIGDWRLDECTLYVTLEPCLMC 90
>gi|313203297|ref|YP_004041954.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
gi|312442613|gb|ADQ78969.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
Length = 156
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+FM A+ S ++ A +IVK+G +I G HAEV A+ +A
Sbjct: 5 KKFMRKAIALSLKNIENGGG--PFAAVIVKEGKIIATGANRVTANTDPTAHAEVNAIRKA 62
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
++ G Y + EPC
Sbjct: 63 AKKLGTFDLSGCEIYTSCEPCPMC 86
>gi|225076485|ref|ZP_03719684.1| hypothetical protein NEIFLAOT_01531 [Neisseria flavescens
NRL30031/H210]
gi|224952164|gb|EEG33373.1| hypothetical protein NEIFLAOT_01531 [Neisseria flavescens
NRL30031/H210]
Length = 240
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 4 SSFD-ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ +R +G V +IV G I G HAE
Sbjct: 88 SQSDMEAFMRLAIEQARQSATLGEV----PVGAVIVYQGKAIAAAHNTCIGDHNVSHHAE 143
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL AG+ Y+TLEPCS
Sbjct: 144 INALAAAGKALQNYRLEDCDVYITLEPCSMC 174
>gi|116333248|ref|YP_794775.1| cytosine/adenosine deaminase [Lactobacillus brevis ATCC 367]
gi|116098595|gb|ABJ63744.1| tRNA-adenosine deaminase [Lactobacillus brevis ATCC 367]
Length = 183
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M AL + G + +IV DG +IGRG + HAE++A+E
Sbjct: 11 RHYMEEALFEAEQAAVIGEV----PIGSVIVHDGQIIGRGHNLREHGHDATLHAEIRAIE 66
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
EA YVT+EPC
Sbjct: 67 EACATLQSWRLNDCQLYVTIEPCLMCS 93
>gi|163758411|ref|ZP_02165499.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
phototrophica DFL-43]
gi|162284700|gb|EDQ34983.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea
phototrophica DFL-43]
Length = 148
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M AL R G V +IV DG VI R HAE+ A+ +A
Sbjct: 6 YMDLALEEGRQAAERGEV----PVGAVIVLDGEVIARAGNRTRELNDVTAHAEILAIRQA 61
Query: 64 -----GEEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 62 AMQLSSERLIGADLYVTLEPCTMC 85
>gi|256545480|ref|ZP_05472842.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
51170]
gi|256398876|gb|EEU12491.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC
51170]
Length = 157
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
D +M A+ ++ + C+IVKD +I R HAE+ A++
Sbjct: 2 DDIFYMKEAINEAKLARLE--DEVPIGCVIVKDEKIIARSHNYTYKGKSALKHAEILAID 59
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + T YVT+EPCS
Sbjct: 60 KASKYVGDFRLEDCTMYVTMEPCSMC 85
>gi|254882842|ref|ZP_05255552.1| cytosine deaminase [Bacteroides sp. 4_3_47FAA]
gi|319643397|ref|ZP_07998023.1| cytosine/adenosine deaminase [Bacteroides sp. 3_1_40A]
gi|254835635|gb|EET15944.1| cytosine deaminase [Bacteroides sp. 4_3_47FAA]
gi|317385026|gb|EFV65979.1| cytosine/adenosine deaminase [Bacteroides sp. 3_1_40A]
Length = 144
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M AL + G V ++V +IGRG T HAE+Q
Sbjct: 2 ADDTYYMKQALMEAVKAAEQGEV----PVGAVVVCRDRIIGRGHNLTETLNDVTAHAEMQ 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A G+ T YVT+EPC CA I ++V +DP
Sbjct: 58 AITAAANTLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDPKRGYQK 111
Query: 114 RGLQWLSQKGIIV 126
L K I+V
Sbjct: 112 YAPDALHPKTIVV 124
>gi|146342901|ref|YP_001207949.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium
sp. ORS278]
gi|146195707|emb|CAL79734.1| putative cytidine and deoxycytidylate deaminase [Bradyrhizobium
sp. ORS278]
Length = 148
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM AL+ + G + C++V+DG VI T HAE+ AL +A
Sbjct: 6 FMDLALKAAESAAISGEV----PIGCVVVRDGTVIAAAANRTLTDRDPTAHAEILALRQA 61
Query: 64 -----GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 62 AQAIGSERLIDCDLYVTLEPCTMC 85
>gi|317124169|ref|YP_004098281.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
gi|315588257|gb|ADU47554.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
Length = 230
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 12/221 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R ++ L +S D + + + ++ ++V RA SDAILVG T+ DDP
Sbjct: 1 MPERPYVLLSCGMSIDGYLDTSASKRLLLSNAADFDRVDAERAASDAILVGASTIRKDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA--------PVIIVTENDDPVLA 257
L R + R + K+++ S + ++ P +
Sbjct: 61 RLLVRSPERRADRVSRGLPASPTKVTVTSHADLDCNASFFTVGETEKLVYCASEAVPEAS 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + +L L GRGV L+VEGG V + + L D + L +
Sbjct: 121 ARLSGVATVVDAGQPCTMHHVLEDLHGRGVRRLMVEGGGTVHTQLLTADLADELQLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEY 354
+G+ + +G + V L Y
Sbjct: 181 FFVGDSAACRFVGDGDFPWNPERRATLAEVRQIDDVVMLRY 221
>gi|294496137|ref|YP_003542630.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanohalophilus mahii DSM 5219]
gi|292667136|gb|ADE36985.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanohalophilus mahii DSM 5219]
Length = 226
Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 13/225 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ A+S D I V I+G + ++ LRA SDA++VGIGTVLADDP
Sbjct: 1 MPTPFTFINAAMSIDGKISTRQRRQVRISGDVDFERMDELRASSDAVMVGIGTVLADDPS 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + + + + +P+RI++D ++ ++ I + +I V+E+
Sbjct: 61 LTVKSDERRAKRLAKGLDENPVRIVVDSKARIPTNADIFRKGAGKIIIAVSESAAFDRVE 120
Query: 259 A-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ +K + + + DL +LL+IL G+ L+VEGGA + + + LVD I +
Sbjct: 121 SLRKKAMVIMAGGNQVDLPELLSILDEMGIHRLMVEGGAGLNWGLVKNGLVDEIYSFIGN 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKN 358
++IG G P+ ++ + + + V L++ KN
Sbjct: 181 LIIGGGTAPTLIDGEGFDEANMPTCSLISAEKMEGGVLLKWKLKN 225
>gi|116495716|ref|YP_807450.1| cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
gi|116105866|gb|ABJ71008.1| tRNA-adenosine deaminase [Lactobacillus casei ATCC 334]
Length = 168
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 3 VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
+ D +FM AAL ++ G + +IV G +IGRG T HA
Sbjct: 1 MDEHDINQFMDAALTEAKKAAAIGEV----PIGAVIVHQGEIIGRGYNLRETTQDATYHA 56
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A++ A + + +VTLEPC
Sbjct: 57 EMLAIQAACKTLGTWRLEDCSLFVTLEPCPMC 88
>gi|257871097|ref|ZP_05650750.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
gi|257805261|gb|EEV34083.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
Length = 173
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM AL+ ++ + + ++V +G +IGRG HAE+ A+++A
Sbjct: 18 EYFMREALKEAQKAEAIAEV--PIGAVVVLEGQIIGRGHNLREKQQEATAHAEMFAIQQA 75
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ A +VTLEPC
Sbjct: 76 CQAIESWRLEQAQLFVTLEPCPMCS 100
>gi|228994217|ref|ZP_04154115.1| Cytosine deaminase [Bacillus pseudomycoides DSM 12442]
gi|228765510|gb|EEM14166.1| Cytosine deaminase [Bacillus pseudomycoides DSM 12442]
Length = 169
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGL-TSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAE 56
+ D F+ AL ++ + T V +IV ++ ++G+G T HAE
Sbjct: 1 MREMDRLFLEMALEEAKKAMKENTYP---VGAIIVGRNNEILGKGRNRVHTQDDASAHAE 57
Query: 57 VQALEEAGEEARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ A+ AG++ A T Y TLEPC + + F I
Sbjct: 58 IDAIRTAGKKLILAKENRLPITLYTTLEPCPMCTGAILFSHFTRVVWI 105
>gi|269797481|ref|YP_003311381.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
2008]
gi|269094110|gb|ACZ24101.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
2008]
Length = 169
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S D FM AL + +G + ++V++ +I R H
Sbjct: 1 MDERSRDEYFMGFALEEAHKAYALGEI----PIGAILVQNNTIISRHHNRRELDHDATAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV + EA + G T YVT+EPC
Sbjct: 57 AEVLVIREACDVLKRWRLTGCTLYVTIEPCPMC 89
>gi|282163718|ref|YP_003356103.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
reductase [Methanocella paludicola SANAE]
gi|282156032|dbj|BAI61120.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
reductase [Methanocella paludicola SANAE]
Length = 230
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+R + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP
Sbjct: 1 MERPFTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRASSDAVMVGIGTVLADDPS 60
Query: 207 LTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + +E +P RI++D ++ L + + K + +++V+++
Sbjct: 61 LTVKSEERRRRRVSEGKEENPARIVVDSKARIPLTADVFKKGVGKRIVVVSKSAPSDKVE 120
Query: 259 A-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A K ++ + + DL + L RG+ L+VEGGA + + + LVD I ++
Sbjct: 121 ALKAKADVIVAGGEEVDLPVMSGELKKRGIDRLMVEGGATLNWAMTRAGLVDEISVFVGN 180
Query: 318 IVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358
++IG P+ ++ + + + + V L + ++
Sbjct: 181 LIIGGKTAPTFMDGEGISERSEAIELDLEKCERMDEGVVLTWRVRS 226
>gi|186686613|ref|YP_001869809.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
gi|186469065|gb|ACC84866.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
Length = 143
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D FM AA++ ++ + ++VKDG ++GRG G P HAE+ L
Sbjct: 1 MDE-FMEAAIQEAKQGREEGGI--PIGSVLVKDGKILGRGHNKRVQDGDPVTHAEIDCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG RG T Y TL PC
Sbjct: 58 NAGRVGSYRGTTLYSTLMPCYLC 80
>gi|315037609|ref|YP_004031177.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
1112]
gi|325956088|ref|YP_004286698.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus
30SC]
gi|312275742|gb|ADQ58382.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
1112]
gi|325332653|gb|ADZ06561.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus
30SC]
Length = 168
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S ++M A+ ++ G + +IV DG VIG G
Sbjct: 1 MLSSDDKQKYMQLAIAQAKEAEKQGEV----PIGAVIVDPDGKVIGTGYNRRELDEDATQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + + +VTLEPC
Sbjct: 57 HAEMIAIKEACKNLGMWRLIDCSLFVTLEPCPMC 90
>gi|189426160|ref|YP_001953337.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
gi|189422419|gb|ACD96817.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
Length = 157
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ +M A+ +R + C+IV++ +I R HAE+
Sbjct: 1 MQRTHDYWMDKAIAEARKA--EVIAEVPIGCVIVQNNRIIARAHNLREAKQDPAAHAELL 58
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 59 AIRKAARKLGNWRLLETTLYVTLEPCLMC 87
>gi|313887628|ref|ZP_07821310.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846237|gb|EFR33616.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 150
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
+FM ALR+ R + S + + C++VK+ +IG G HAE+ A+ A
Sbjct: 4 KFMKEALRYGRRSLL--SDDVPIGCVVVKNNKIIGYGYNKKEDLKNPTAHAEIMAISMAA 61
Query: 65 E-----EARGATAYVTLEPCSHY 82
G YVTLEPC
Sbjct: 62 RHLNSYHLEGCDIYVTLEPCLMC 84
>gi|163787392|ref|ZP_02181839.1| cytidine/deoxycytidylate deaminase family protein
[Flavobacteriales bacterium ALC-1]
gi|159877280|gb|EDP71337.1| cytidine/deoxycytidylate deaminase family protein
[Flavobacteriales bacterium ALC-1]
Length = 159
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+FM A+ + + + C++VKDG ++GRG HAEV A+ +A
Sbjct: 7 EKFMLEAVNAALKGMNN-NEGGPFGCVVVKDGEIVGRGNNKVTSTNDPTAHAEVTAIRDA 65
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 66 CKNLDSFQLEGCQIYTSCEPCPMC 89
>gi|254459431|ref|ZP_05072850.1| guanine deaminase [Campylobacterales bacterium GD 1]
gi|207083841|gb|EDZ61134.1| guanine deaminase [Campylobacterales bacterium GD 1]
Length = 152
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
++M A + + L + +IVKD +I + HAEV A+ +A
Sbjct: 3 KWMKIAYDEATEGM-LANDGGPFGAVIVKDDKIISQAHNQVLKSNDPTAHAEVNAIRKAS 61
Query: 65 E-----EARGATAYVTLEPCSHY 82
E + G Y + PC
Sbjct: 62 EVLETFDLSGCVLYTSCMPCPMC 84
>gi|218929978|ref|YP_002347853.1| tRNA-specific adenosine deaminase [Yersinia pestis CO92]
gi|115348589|emb|CAL21531.1| putative zinc-binding protein [Yersinia pestis CO92]
Length = 159
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + G V ++V VIG G HAE+ AL + G
Sbjct: 1 MRHALTLALRAQEEGEV----PVGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ AT YVTLEPC
Sbjct: 57 QAVQNYRLLDATLYVTLEPCVMC 79
>gi|282849118|ref|ZP_06258503.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella parvula ATCC 17745]
gi|282580822|gb|EFB86220.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella parvula ATCC 17745]
Length = 181
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S D FM AL + +G + ++V++ +I R H
Sbjct: 13 MDERSRDEYFMGFALEEAHKAYALGEI----PIGAILVQNNTIISRHHNRRELDHDATAH 68
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV + EA + G T YVT+EPC
Sbjct: 69 AEVLVIREACDVLKRWRLTGCTLYVTIEPCPMC 101
>gi|317503805|ref|ZP_07961817.1| cytosine deaminase [Prevotella salivae DSM 15606]
gi|315665102|gb|EFV04757.1| cytosine deaminase [Prevotella salivae DSM 15606]
Length = 148
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +FM AL ++ + +IV + +I R + HAE+QA+
Sbjct: 6 DKDEQFMRKALYEAQRAAEEGEI--PIGAVIVCNDRIISRAHNLTEKLHDVTAHAEMQAI 63
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC
Sbjct: 64 TAAADLLGGKYLSDCTLYVTVEPCVMC 90
>gi|218194431|gb|EEC76858.1| hypothetical protein OsI_15040 [Oryza sativa Indica Group]
Length = 288
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +AG
Sbjct: 54 DDDGVYIRRCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAG 113
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV R + ++
Sbjct: 114 DLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVMWGLTYERRPRSIVDGMTDPNP 173
Query: 125 IV 126
IV
Sbjct: 174 IV 175
>gi|317051389|ref|YP_004112505.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum
indicum S5]
gi|316946473|gb|ADU65949.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum
indicum S5]
Length = 167
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 1 MPVSSFD---ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGG 51
M S+ D RFM+ AL +R G V +IV+ G +I R
Sbjct: 1 MIPSTPDADAERFMAVALEEARQAAQRGEV----PVGAVIVRHGEIIARAGNRKEEHRDP 56
Query: 52 CPHAEVQALEE-----AGEEARGATAYVTLEPCSHY 82
HAEV A+ E A YVTLEPC
Sbjct: 57 TAHAEVLAIREAAAACANWRLEDVELYVTLEPCVMC 92
>gi|268611568|ref|ZP_06145295.1| cytosine/adenosine deaminase [Ruminococcus flavefaciens FD-1]
Length = 153
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKD--GIVIGRGV----TAYGGCPHAEVQALE 61
+M AL +R G V ++VK G ++G G TA HAE++A++
Sbjct: 4 YMKRALELAREAFDEGEV----PVGAVVVKKTTGEIVGEGRNRRETAKNALAHAEIEAID 59
Query: 62 EAGEEARG-----ATAYVTLEPCSHY 82
+A + G YVTLEPC
Sbjct: 60 QACRKLGGWRLPECALYVTLEPCPMC 85
>gi|302529252|ref|ZP_07281594.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
gi|302438147|gb|EFL09963.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4]
Length = 371
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ +LLVEGG AV F+++ L D + L + +++G+ P L G +
Sbjct: 147 RGIRTLLVEGGGAVHTQFLDAGLADELRLAIAPVMVGDPRAPRFLGPGAFPRPLELTELR 206
Query: 345 YFGSDVCLEYI 355
G L Y
Sbjct: 207 RLGDVAVLRYR 217
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPH--AEVQAL 60
SS D + A+ + S+ V ++ + DG V+ G + G PH AE AL
Sbjct: 223 SSLDLLRLRQAIDLADE--CPPSSTFRVGAVVGLPDGTVLATG-HSGEGDPHNHAEESAL 279
Query: 61 EEAGE---EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+ AT Y +LEPCS C Q I+E I RVV+ +P + V G+
Sbjct: 280 AKLDPHDPRLADATMYSSLEPCSDRASHPKSCTQLILETAIPRVVMAWREPSLFVEAEGV 339
Query: 117 QWLSQKGIIV 126
+ L G V
Sbjct: 340 ERLMAAGRRV 349
>gi|183220072|ref|YP_001838068.1| putative riboflavin biosynthesis protein RibD [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910192|ref|YP_001961747.1| pyrimidine reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167774868|gb|ABZ93169.1| Pyrimidine reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167778494|gb|ABZ96792.1| Putative riboflavin biosynthesis protein RibD:Riboflavin-specific
deaminase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 213
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
+ +A++ D + +T K Q+ + R+QSDA+L+G ++L D+P + R
Sbjct: 5 INMAMTLDGKVVRPDGRWYGLTSSEDKTQMDVYRSQSDAVLIGKNSILNDNPIVKIRAVP 64
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
+ I++ ++ + +I N + K I + D
Sbjct: 65 NALNPRPVILVRKGTLPPDKHVFEESDHIPLIICTKSNLKEIKTSLENKAEIFALDSDDI 124
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-- 331
D KK+ IL +G ++L+EGG + SF+ + LVD I + +IG+ G+ +
Sbjct: 125 DPKKVTGILKRKGYKNVLLEGGPKLNFSFLEADLVDRIYITVVPYIIGKTGLAGIADRNS 184
Query: 332 ---GYLEKNFMCVRRDYFGSDVCLEYIG 356
G+ ++N+ + G+++ L Y
Sbjct: 185 ELPGFDKQNWTLKQHFTKGNEIFLVYEK 212
>gi|91774264|ref|YP_566956.1| hypothetical protein Mbur_2352 [Methanococcoides burtonii DSM 6242]
gi|91713279|gb|ABE53206.1| 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase [Methanococcoides burtonii DSM 6242]
Length = 226
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 13/221 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + A+S D I V I+G I +++ LRA SDAI+VGIGTVLADDP
Sbjct: 1 MNRPFTFINSAMSADGKISTKERKQVRISGDIDFDRMDELRASSDAIMVGIGTVLADDPS 60
Query: 207 LTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + ++ P+RII+D + L++ I K ++ V+ +
Sbjct: 61 LTVKSRYRRDTRKNKGLDEDPVRIIVDSKARTPLNADIFKKGTGMRIVAVSSSAPKEKVD 120
Query: 259 AFRKKNINIIYCDCRDLKKL-LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A KK I D + L + L G+ L+VEGGA + +++ LVD + +
Sbjct: 121 ALSKKATIITAGDEKVDLVLLMGQLSSMGIQRLMVEGGATLNWGLLSNGLVDEVFSFIGN 180
Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
I IG P+ ++ K + + V L++
Sbjct: 181 IFIGGNSSPTLVDGEGFLKGDFLPLELISSETIEEGVLLKW 221
>gi|254030277|gb|ACT53870.1| DRAP deaminase [Candida membranifaciens]
Length = 357
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE----A 63
++M A+ + G T+T +V ++V DG ++G G T G HAE ALE+
Sbjct: 212 KYMELAIELAEK-CGETTTQFNVGAVLVYDGEILGTGHTRELEGNTHAEQCALEKYFTRT 270
Query: 64 GEE--ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
GE G Y ++EPCS G P + + V V+ D +Q L
Sbjct: 271 GERNVPYGTKIYTSMEPCSFRLSGNLPCVERILQTNITTCFVGVVEPGDFVKDNTSVQTL 330
Query: 120 SQKGIIVDRMMESEGKI 136
KG+ + E K
Sbjct: 331 ESKGVEYIHIPGYEEKC 347
>gi|241760058|ref|ZP_04758156.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
flavescens SK114]
gi|241319512|gb|EER55942.1| cytidine and deoxycytidylate deaminase family protein [Neisseria
flavescens SK114]
Length = 240
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 4 SSFD-ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ +R +G V +IV G I G HAE
Sbjct: 88 SQSDMEAFMRLAIEQARQSAALGEV----PVGAVIVYQGEAIAAAHNTCIGDHNVSHHAE 143
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL AG+ Y+TLEPCS
Sbjct: 144 INALATAGKALQNYRLEDCDVYITLEPCSMC 174
>gi|212550942|ref|YP_002309259.1| cytosine/adenosine deaminase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549180|dbj|BAG83848.1| putative cytosine/adenosine deaminase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 146
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D +M AL ++ + +IV D +I R T HAE+QA+
Sbjct: 5 DEYYMKQALLEAQKAFEKAEV--PIGAVIVSDKRIIARSHNLTETLNDTTAHAEMQAITA 62
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ YVT+EPC
Sbjct: 63 ASIALGGKYLTNCVLYVTVEPCPMC 87
>gi|289547972|ref|YP_003472960.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
14484]
gi|289181589|gb|ADC88833.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM
14484]
Length = 156
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ F+ A L + G V C++VK+G +I R HAE
Sbjct: 1 MKDSHEPFVKACLLEAHRAFRKGEI----PVGCVVVKEGRIIARAHNRTIALKDPTAHAE 56
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGR 84
+ A+ +A ++ G T YVTLEPC+
Sbjct: 57 ILAIRKALKKLGESFLYGCTLYVTLEPCAMCAY 89
>gi|148253230|ref|YP_001237815.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
gi|146405403|gb|ABQ33909.1| tRNA-adenosine deaminase [Bradyrhizobium sp. BTAi1]
Length = 148
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM AL+ + G + C++V+D VI T HAE+ AL +A
Sbjct: 6 FMDLALKAAESAAISGEV----PIGCVVVRDNAVIATAANRTLTDRDPTAHAEILALRQA 61
Query: 64 -----GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 62 AQVIGSERLVDCDLYVTLEPCTMC 85
>gi|327182903|gb|AEA31350.1| cytidine-deoxycytidylate deaminase [Lactobacillus amylovorus GRL
1118]
Length = 168
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S ++M A+ ++ G + +IV DG VIG G
Sbjct: 1 MLSSDDKQKYMQLAIAQAKEAEKQGEV----PIGAVIVDPDGKVIGTGYNRRELDKDATQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + + +VTLEPC
Sbjct: 57 HAEMIAIKEACKNLGMWRLIDCSLFVTLEPCPMC 90
>gi|297620926|ref|YP_003709063.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
86-1044]
gi|297376227|gb|ADI38057.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU
86-1044]
Length = 176
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D +M AAL+ + G V ++VK+G VI RG HAE+
Sbjct: 17 NEDETYMLAALKEAWKAFVKGEV----PVGAILVKEGKVIARGHNQVEMLRDATAHAEML 72
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
+ A GAT Y T+EPCS
Sbjct: 73 CITVAEAAEDNWRLNGATLYCTIEPCSMC 101
>gi|331695256|ref|YP_004331495.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326949945|gb|AEA23642.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 231
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 4/144 (2%)
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
P+++ L K+S DS+ + T V+ + + + D D+ L
Sbjct: 82 PVKVTLTRTGKISPDSRFLTTGDGDRVVYAPTSAVADVRERVGAAATVVGAGDPLDVTVL 141
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336
L L RGV L+VEGG+ V F++S LVD + + + ++G+ G P + +
Sbjct: 142 LDDLHRRGVRRLMVEGGSEVHTLFMSSGLVDELHVVFAPFLVGQPGAPRFVNAAVFPQGP 201
Query: 337 --NFMCVRRDYFGSDVCLEYIGKN 358
V G V L Y+ +
Sbjct: 202 GNRMRLVEARPIGDVVLLRYVPVD 225
>gi|258650582|ref|YP_003199738.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258553807|gb|ACV76749.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 230
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 12/221 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R + L S D + AG + ++ ++V +RA DAILVG TV D+P
Sbjct: 1 MSERPYTLLSCCTSLDGYLAGAGQRRLLLSNDADFDRVDEVRAGCDAILVGAATVRKDNP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKL--------SLDSKIIKTALLAPVIIVTENDDPVLA 257
L R ++ R K+ ++ + +
Sbjct: 61 RLLVRTATRRDDRVTRGQAPSPAKVTLTCGAQLDPTARFFTEGETDRYVYCASSAVTQAR 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + I DL + L GRG+ L+VEGG +V F+ + L D + L +
Sbjct: 121 RSLGPRATVIDGGQPVDLAWMSQDLYGRGIRRLMVEGGGSVHTQFLTAGLADELNLVIAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEY 354
+G+ +++G + G V L Y
Sbjct: 181 FFVGDHRGRRFVDDGDFPFHPGRRARLAEVRQIGDVVLLRY 221
>gi|12060484|dbj|BAB20627.1| hypothetical protein [Thermosynechococcus elongatus]
Length = 105
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
+ +M A+ + G P V +IV + +I G HAE+
Sbjct: 10 TDPHDFWMQQAIALAEQA-GAADEVP-VGAVIVSAENELIATGENRRQRDHDPTAHAEII 67
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
AL AG+ G YVTLEPC
Sbjct: 68 ALRRAGQRLGTWYLTGCRLYVTLEPCPMC 96
>gi|308171910|ref|YP_003918615.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens DSM
7]
gi|307604774|emb|CBI41145.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens DSM
7]
gi|328551718|gb|AEB22210.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens
TA208]
gi|328909978|gb|AEB61574.1| tRNA specific adenosine deaminase [Bacillus amyloliquefaciens
LL3]
Length = 160
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A++ ++ G + ++V ++ R T HAE+ A+
Sbjct: 3 DEYYMREAIKEAKKAEAKGEV----PIGAVLVLHDEIVARAHNLRETEQRSLAHAEMLAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA A YVTLEPC
Sbjct: 59 DEACRKLGTWRLEDAVLYVTLEPCPMC 85
>gi|323340129|ref|ZP_08080393.1| tRNA-specific adenosine deaminase [Lactobacillus ruminis ATCC
25644]
gi|323092320|gb|EFZ34928.1| tRNA-specific adenosine deaminase [Lactobacillus ruminis ATCC
25644]
Length = 153
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM AL+ ++ G + C+IV G +IGRG HAE+ A+ EA
Sbjct: 9 FMKEALKEAKSAYEAGEV----PIGCVIVSGGRIIGRGHNRREELQDATEHAEMIAIREA 64
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+VTLEPC
Sbjct: 65 NRTLGSFRLENCALFVTLEPCPMC 88
>gi|255659416|ref|ZP_05404825.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM
20544]
gi|260848379|gb|EEX68386.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM
20544]
Length = 169
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
DA +M AL ++ L + ++V ++G V+ RG HAE+ A+
Sbjct: 4 DAYYMRLALEEAQKAYDL--EEVPIGAVLVDREGEVVARGHNMREVWHDATAHAEMIAIR 61
Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
EA G T YVT+EPC + ++
Sbjct: 62 EACAKEGRWRLSGLTLYVTIEPCPMCAGAIVMSR 95
>gi|33597610|ref|NP_885253.1| putative zinc-binding hydrolase [Bordetella parapertussis 12822]
gi|33602013|ref|NP_889573.1| putative zinc-binding hydrolase [Bordetella bronchiseptica RB50]
gi|33574038|emb|CAE38361.1| putative zinc-binding hydrolase [Bordetella parapertussis]
gi|33576451|emb|CAE33529.1| putative zinc-binding hydrolase [Bordetella bronchiseptica RB50]
Length = 168
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
+ DAR M+ AL ++ +G V ++V G V+G G HAE+
Sbjct: 14 ADDARLMALALEQAQEAARLGEV----PVGAVVVDAQGEVLGAGYNRTIIDRDPTAHAEI 69
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A G + YVTLEPC
Sbjct: 70 VALRAAARRLDNYRLPGVSLYVTLEPCVMC 99
>gi|154684537|ref|YP_001419698.1| YaaJ [Bacillus amyloliquefaciens FZB42]
gi|154350388|gb|ABS72467.1| YaaJ [Bacillus amyloliquefaciens FZB42]
Length = 160
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A++ ++ G + ++V ++ R T HAE+ A+
Sbjct: 3 DEYYMREAIKEAKKAEAKGEV----PIGAVLVLHDEIVARAHNLRETEQRSLAHAEMLAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA A YVTLEPC
Sbjct: 59 DEACRKLGTWRLEDAVLYVTLEPCPMC 85
>gi|148243600|ref|YP_001228757.1| nucleoside deaminase [Synechococcus sp. RCC307]
gi|147851910|emb|CAK29404.1| Nucleoside deaminase [Synechococcus sp. RCC307]
Length = 163
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
M + +FM+ A+ SR + +IV+DG+VI + G HAE
Sbjct: 1 MSSADQHEQFMAQAIEISRQTALEERSGEPFGAVIVRDGVVIAAEGNSVNGDSDPTAHAE 60
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ AG + G Y + C
Sbjct: 61 INAIRAAGRALGTWDLSGCVLYASSRCCPMC 91
>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
Length = 524
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
S D RFM AL + G + ++V+ VI + HAE+
Sbjct: 378 SLDERFMRLALAEAHSAGGRGEV----PIGAVLVRGEKVIAKAGNQVEEFQDATAHAELL 433
Query: 59 ALEEA----GEE-ARGATAYVTLEPCSHY 82
A+ A GE+ G+T YVTLEPC
Sbjct: 434 AIRAALEALGEKVLPGSTLYVTLEPCPMC 462
>gi|89898061|ref|YP_515171.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
gi|89331433|dbj|BAE81026.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56]
Length = 157
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + D FM ALR +R V C+IVKD +I RG HAE
Sbjct: 1 MNI-EKDIFFMKQALREARQAYDE--DEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ + A + Y TLEPC
Sbjct: 58 ILCIGAAAQYLENWRLVDTVLYCTLEPCLMC 88
>gi|317481165|ref|ZP_07940240.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides sp. 4_1_36]
gi|316902661|gb|EFV24540.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides sp. 4_1_36]
Length = 146
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ +M AL + G P V ++V +I R T HAE+QA+
Sbjct: 4 DDSYYMKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 61
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ T YVT+EPC CA I + R+V +D
Sbjct: 62 AAAATLGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGRLVFGAEDEKRGYQRYAS 115
Query: 117 QWLSQKGIIV 126
Q L K +V
Sbjct: 116 QALHPKTQVV 125
>gi|315305704|ref|ZP_07875310.1| tRNA-specific adenosine deaminase [Listeria ivanovii FSL F6-596]
gi|313625927|gb|EFR95453.1| tRNA-specific adenosine deaminase [Listeria ivanovii FSL F6-596]
Length = 84
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALEEAEKAREIGEV----PIGAVVVLDGKIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSH 81
A GA YVTLEPC
Sbjct: 61 ACNYQNSWRLSGAELYVTLEPCPM 84
>gi|253572102|ref|ZP_04849506.1| cytosine deaminase [Bacteroides sp. 1_1_6]
gi|298383486|ref|ZP_06993047.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
1_1_14]
gi|251838282|gb|EES66369.1| cytosine deaminase [Bacteroides sp. 1_1_6]
gi|298263090|gb|EFI05953.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
1_1_14]
Length = 146
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 21/135 (15%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
++ D FM AL + G V ++V +I R T HAE
Sbjct: 1 MTLDDTYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAE 56
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+QA+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 57 MQAITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDDKRGY 110
Query: 112 SGRGLQWLSQKGIIV 126
Q L K ++V
Sbjct: 111 QRYAAQALHPKTVVV 125
>gi|261868753|ref|YP_003256675.1| tRNA-specific adenosine deaminase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414085|gb|ACX83456.1| tRNA-specific adenosine deaminase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 175
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPH 54
+ D +FM AL + +G V ++V + G +IG G H
Sbjct: 4 SQTQLDEKFMHHALMLAGKAEALGEI----PVGAVLVSEAGEIIGEGWNLSIIHSDPTAH 59
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ L + G++ + T YVTLEPC+
Sbjct: 60 AEIVTLRQGGQKLQNYRLLNTTLYVTLEPCTMC 92
>gi|326564207|gb|EGE14443.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 12P80B1]
Length = 184
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
S D M+ AL ++ G V ++V +G ++G G T HAE+
Sbjct: 25 SMRDVEMMNHALEIAKQGAKFGEI----PVGAVVVYEGRILGEGYNCPITTQDPTAHAEI 80
Query: 58 QALEEAGEEA------RGATAYVTLEPCSHY 82
A+ A E +G YVTLEPC+
Sbjct: 81 VAVRRACETLNNYRLPKGCILYVTLEPCTMC 111
>gi|167765018|ref|ZP_02437139.1| hypothetical protein BACSTE_03412 [Bacteroides stercoris ATCC
43183]
gi|167697687|gb|EDS14266.1| hypothetical protein BACSTE_03412 [Bacteroides stercoris ATCC
43183]
Length = 144
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
++ D +M AL ++ G P V ++V +I R T HAE+Q
Sbjct: 1 MTDTD--YMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQ 56
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A G+ T YVT+EPC CA I + R+V +D
Sbjct: 57 AITAAAATLGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGRLVFGAEDEKRGYQR 110
Query: 114 RGLQWLSQKGIIV 126
+ L K +V
Sbjct: 111 YAPKALHPKTAVV 123
>gi|307324661|ref|ZP_07603867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
violaceusniger Tu 4113]
gi|306889543|gb|EFN20523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
violaceusniger Tu 4113]
Length = 238
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 97/232 (41%), Gaps = 17/232 (7%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
V+ R + K A + D I A S IT S+ +VH LRA A +VG GT
Sbjct: 10 DEWHTVDGRPFVVYKYAATLDGRIAAADSTSQWITSAESRAEVHALRAACQATVVGSGTQ 69
Query: 201 LADDPELTCRLNGLQE---------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
AD+P L R P R+I+D + + D++++ A +I V ++
Sbjct: 70 QADNPHLAVRSVKDDPKLKVAVPVDQQPWRVIVDTNARTPADARVLDDA-APTMIAVADD 128
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
D D++ LL L RGV + +EGG +A SF+++ LVD I
Sbjct: 129 ADASHLEGVATVVRLPRAKVGLDVEALLRALHRRGVRGMFLEGGPTLAASFVSAGLVDRI 188
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKN 358
+ Y + ++G G S LE G +E V G DV L +
Sbjct: 189 VAYIAPALLGRG--KSGLEGGTIETIDDILRCELVDVARSGPDVRLIARPQR 238
>gi|313631569|gb|EFR98838.1| tRNA-specific adenosine deaminase [Listeria seeligeri FSL N1-067]
Length = 156
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALVEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A GA YVTLEPC
Sbjct: 61 ACNHQKSWRLSGAELYVTLEPCPMCS 86
>gi|326203924|ref|ZP_08193786.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
gi|325986022|gb|EGD46856.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
Length = 151
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
+FM A++ ++ G + V ++VKDG +I G HAE++AL+
Sbjct: 6 EQFMQEAIKQAKEAYAKGES----PVGAIVVKDGELIASGCNQKEEKQDVTSHAEIEALK 61
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + G YVTLEPC+
Sbjct: 62 KAAKKLGTWRLDGCDMYVTLEPCAMC 87
>gi|126662495|ref|ZP_01733494.1| putative cytosine/adenosine deaminase [Flavobacteria bacterium
BAL38]
gi|126625874|gb|EAZ96563.1| putative cytosine/adenosine deaminase [Flavobacteria bacterium
BAL38]
Length = 146
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AL+ + G V +IV D VI R + HAE+QA+
Sbjct: 7 DDYFMKKALQEAETAFEKGEI----PVGAVIVIDNKVIARTHNLTELLHDVTAHAEMQAI 62
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ + T YVTLEPC
Sbjct: 63 TSAANFLGGKYLKDCTLYVTLEPCQMC 89
>gi|260061052|ref|YP_003194132.1| putative cytosine/adenosine deaminase [Robiginitalea biformata
HTCC2501]
gi|88785184|gb|EAR16353.1| putative cytosine/adenosine deaminase [Robiginitalea biformata
HTCC2501]
Length = 149
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + DA FM AL+ + +G V +I VI R H
Sbjct: 1 MELILDDAFFMRKALQEAEAAFDLGEV----PVGAVITVRDRVIARAHNLTEKLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ T YVTLEPC
Sbjct: 57 AEMQAITAAANFLGGKYLTDCTLYVTLEPCQMC 89
>gi|313107393|ref|ZP_07793584.1| putative deaminase [Pseudomonas aeruginosa 39016]
gi|310880086|gb|EFQ38680.1| putative deaminase [Pseudomonas aeruginosa 39016]
Length = 151
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPRLDGCVIYASGHPCPMC 85
>gi|225874834|ref|YP_002756293.1| guanine deaminase [Acidobacterium capsulatum ATCC 51196]
gi|225793201|gb|ACO33291.1| guanine deaminase [Acidobacterium capsulatum ATCC 51196]
Length = 162
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
+ A F+ A+ + +V +IV++ V+ T HAEV A
Sbjct: 6 NQTHATFLRRAIALALENV-QAGKGGPFGAVIVREDKVVAEAANSVFTTNDPTAHAEVNA 64
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ A RG Y + EPC
Sbjct: 65 IRAACRNLGVFELRGCVIYTSSEPCPMC 92
>gi|15618909|ref|NP_225195.1| cytosine deaminase [Chlamydophila pneumoniae CWL029]
gi|16752024|ref|NP_445390.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
pneumoniae AR39]
gi|4377331|gb|AAD19138.1| cytosine deaminase [Chlamydophila pneumoniae CWL029]
gi|8163513|gb|AAF73712.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
pneumoniae AR39]
Length = 155
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM A + +R V C+IVKD +I R + HAE+ +
Sbjct: 2 EKDIFFMQQAFKEARKAYDQDEV--PVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCI 59
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
A ++ Y TLEPC
Sbjct: 60 GSAAQDLDNWRLLDTVLYCTLEPCLMC 86
>gi|320547592|ref|ZP_08041877.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC
9812]
gi|320447667|gb|EFW88425.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC
9812]
Length = 168
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM AL+ ++ + + C+IVKDG +IGRG HAE+ A+ EA
Sbjct: 10 EFFMREALKEAQKSLEK--EEIPIGCVIVKDGEIIGRGHNAREEQQKAILHAEIMAINEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E + +VT+EPC
Sbjct: 68 NENEGNWRLLDSMLFVTIEPCVMCS 92
>gi|171911154|ref|ZP_02926624.1| cytidine/deoxycytidylate deaminase family protein
[Verrucomicrobium spinosum DSM 4136]
Length = 176
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M ALR +R + +IV +I R HAE+ AL +
Sbjct: 13 DEHYMREALRQARKAA--RQDEVPIGAVIVHGSQIIARAWNQVETLKDATAHAEMIALTQ 70
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A YVT EPC
Sbjct: 71 AQGALGDWRLNECDLYVTKEPCPMC 95
>gi|145629986|ref|ZP_01785768.1| hypothetical protein CGSHi22421_08043 [Haemophilus influenzae
R3021]
gi|144984267|gb|EDJ91690.1| hypothetical protein CGSHi22421_08043 [Haemophilus influenzae
R3021]
Length = 159
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE 65
M AL + V ++V D G +IG G HAE+ AL +
Sbjct: 1 MRYALELADKA--EVLGEIPVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIALRNGAK 58
Query: 66 EAR-----GATAYVTLEPCSHY 82
+ +T YVTLEPC+
Sbjct: 59 NIQNYRLLNSTLYVTLEPCTMC 80
>gi|71900513|ref|ZP_00682643.1| riboflavin-specific deaminase [Xylella fastidiosa Ann-1]
gi|71729753|gb|EAO31854.1| riboflavin-specific deaminase [Xylella fastidiosa Ann-1]
Length = 104
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEG 332
+L +L RG+ + VE GA + + +++ LVD +++Y + +++G+ P +
Sbjct: 19 AVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRM 78
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIG 356
+ G+D+ L
Sbjct: 79 DQCIGLKVLEVAQVGNDLRLLLRP 102
>gi|49075844|gb|AAT49501.1| PA2499 [synthetic construct]
Length = 152
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPRLDGCVIYASGHPCPMC 85
>gi|152973870|ref|YP_001373387.1| CMP/dCMP deaminase zinc-binding [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152022622|gb|ABS20392.1| CMP/dCMP deaminase zinc-binding [Bacillus cytotoxicus NVH 391-98]
Length = 164
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D FM A+ ++ + ++V DG VI HAE+ A+
Sbjct: 2 EQDMYFMKLAIEEAKKA--EKIEEVPIGAVLVLDGKVISSAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
++A + AT YVTLEPC
Sbjct: 60 DKACKALGTWRLEHATLYVTLEPCPMC 86
>gi|126658204|ref|ZP_01729355.1| bifunctional deaminase-reductase-like protein [Cyanothece sp.
CCY0110]
gi|126620575|gb|EAZ91293.1| bifunctional deaminase-reductase-like protein [Cyanothece sp.
CCY0110]
Length = 226
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 12/221 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT------ 199
+E R T+ +A++ D I + + I +N + + D +L G GT
Sbjct: 1 MENRPKTTVILAMTADGKIADFQRNAARFSSDIDQNHLEKQISLVDGVLFGAGTLRAFGT 60
Query: 200 --VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
++ D L R + P+ +++ K++ + + ++ +I + +
Sbjct: 61 TKMVKDSELLANRKQKNKPSQPINVVISASGKIANNLRFFSQSVPHWLITTSAGIHNNTS 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ I +L + L G+ + + GG + +F+ L+D + L
Sbjct: 121 KFEKVLTCAEIEAGKINLVEAFKTLKELGLNHIAILGGGELVANFLEQNLIDELWLTVCP 180
Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
++G P+P+E + + + ++ L Y
Sbjct: 181 YILGGKTAPTPVEGIGFLSSHGQKLELLSLEQIEHEIFLHY 221
>gi|270294540|ref|ZP_06200742.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270276007|gb|EFA21867.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 144
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ +M AL + G P V ++V +I R T HAE+QA+
Sbjct: 2 DDSYYMKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 59
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ T YVT+EPC CA I + R+V +D
Sbjct: 60 AAAATLGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGRLVFGAEDEKRGYQRYAS 113
Query: 117 QWLSQKGIIV 126
Q L K +V
Sbjct: 114 QALHPKTQVV 123
>gi|15597695|ref|NP_251189.1| deaminase [Pseudomonas aeruginosa PAO1]
gi|296389082|ref|ZP_06878557.1| putative deaminase [Pseudomonas aeruginosa PAb1]
gi|9948552|gb|AAG05887.1|AE004677_4 probable deaminase [Pseudomonas aeruginosa PAO1]
Length = 151
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPRLDGCVIYASGHPCPMC 85
>gi|332185432|ref|ZP_08387180.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Sphingomonas sp. S17]
gi|332014410|gb|EGI56467.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Sphingomonas sp. S17]
Length = 164
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ D R+M AL+ + G + + C+IV+ G V+ HAE+ A+
Sbjct: 4 ATDERWMRLALQVA-RSKGSDPSTSPLGCVIVRGGQVLAAERNQTHELPDATAHAEMMAI 62
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
A E R AT Y TL+PC
Sbjct: 63 RRACESVGDLELRDATLYSTLQPCGMC 89
>gi|260654860|ref|ZP_05860348.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
gi|260630362|gb|EEX48556.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1]
Length = 166
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTAYG----GCPHAEVQALEE 62
M AL +R G V ++V + G +IGRG HAE+ AL E
Sbjct: 1 MMEQALCEARRAFAGGEV----PVGAVVVDEKGNIIGRGYNLRAALHDPTAHAEIVALRE 56
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G G + +VTLEPC
Sbjct: 57 AAQALGGWNLSGCSLFVTLEPCPMC 81
>gi|125974987|ref|YP_001038897.1| tRNA-adenosine deaminase [Clostridium thermocellum ATCC 27405]
gi|256003803|ref|ZP_05428790.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM
2360]
gi|281418595|ref|ZP_06249614.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|125715212|gb|ABN53704.1| tRNA-adenosine deaminase [Clostridium thermocellum ATCC 27405]
gi|255992141|gb|EEU02236.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM
2360]
gi|281407679|gb|EFB37938.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|316939149|gb|ADU73183.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
DSM 1313]
Length = 161
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1 MPVSS-FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
M + FM AL+ + G T + ++VKDG +I RG HA
Sbjct: 1 MEFEAGSHHWFMREALKEAYKAYGKNET--PIGAVMVKDGSIIARGHNQKELTNDPTNHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ + EA YVTLEPC+
Sbjct: 59 EMAVIREACAKLGTWRLNDCDLYVTLEPCTMC 90
>gi|312219914|emb|CBX99856.1| hypothetical protein [Leptosphaeria maculans]
Length = 259
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ FM A+ + + S V C+ VKDG +IGRG+ G HAE A+
Sbjct: 57 ALHEGFMREAIAMAELAL--KSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 114
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 115 ASILSKHPISILNETDLYVTVEPCVMC 141
>gi|192291626|ref|YP_001992231.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
gi|192285375|gb|ACF01756.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1]
Length = 214
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---AYGGCPHAEVQA 59
+ D R+M+ A+ R + T + +IV+DG V+ G + HAEV A
Sbjct: 58 TEQDRRYMTQAIELMRKAGVVEKTGGAFGAVIVRDGEVLSATGNSVLRDNDPSAHAEVNA 117
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ A ++ RGAT Y + E C
Sbjct: 118 IRAACKKVGAPNLRGATMYTSCECCPMC 145
>gi|262375359|ref|ZP_06068592.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309613|gb|EEY90743.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 171
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
M + F D +M A + + V +IV +IG+G A HA
Sbjct: 1 MSETQFTDEYWMQRAYE--QAALAAAQGEIPVGAIIVSQNQIIGQGFNAPISLNDPTAHA 58
Query: 56 EVQALEEAGEEARG------ATAYVTLEPCSHY 82
E+ AL +A + + A YVTLEPC+
Sbjct: 59 EIVALRDACQNIQNYRLPDDAVLYVTLEPCTMC 91
>gi|315606353|ref|ZP_07881369.1| tRNA-specific adenosine deaminase [Prevotella buccae ATCC 33574]
gi|315252044|gb|EFU32017.1| tRNA-specific adenosine deaminase [Prevotella buccae ATCC 33574]
Length = 147
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D ++M AL+ + P + ++V G +I R T + HAE
Sbjct: 1 MEQLEIDEQYMRKALQEAE-AACQKGEIP-IGAVVVCKGRIISRAHNLTETLHDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+QA+ A G+ T YVT+EPC CA I + R+V D
Sbjct: 59 MQAITAAADLLGGKYLTDCTLYVTVEPC------TMCAGAIGWAQVPRIVYGAPDEKRGY 112
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
+ + IV ++E E + + +
Sbjct: 113 RHYAPHAMHPRADIVGGILEDECRELMQKFF 143
>gi|269302803|gb|ACZ32903.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
pneumoniae LPCoLN]
Length = 155
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM A + +R V C+IVKD +I R + HAE+ +
Sbjct: 2 EKDIFFMQQAFKEARKAYDQDEV--PVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCI 59
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
A ++ Y TLEPC
Sbjct: 60 GSAAQDLDNWRLLDTVLYCTLEPCLMC 86
>gi|291545680|emb|CBL18788.1| Pyrimidine reductase, riboflavin biosynthesis [Ruminococcus sp.
SR1/5]
Length = 116
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
D DLKKL+T L RG+ S+L+EGG + S + + +V + + + + G
Sbjct: 7 YCPDEKDQIDLKKLMTDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLFGGVA 66
Query: 325 IPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE-----YIGKNLCLQE 363
+P+E +E G D+ + + CLQE
Sbjct: 67 GKTPVEGIGVEFPSEAVELKYTDICQIGEDIRIRCQVCEKKQEESCLQE 115
>gi|39935973|ref|NP_948249.1| cytidine/deoxycytidylate deaminase [Rhodopseudomonas palustris
CGA009]
gi|39649827|emb|CAE28349.1| Cytidine/deoxycytidylate deaminase:Tat pathway signal
[Rhodopseudomonas palustris CGA009]
Length = 214
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---AYGGCPHAEVQA 59
+ D R+M+ A+ R + T + +IV+DG V+ G + HAEV A
Sbjct: 58 TEQDRRYMTQAIELMRKAGVVEKTGGAFGAVIVRDGEVLSATGNSVLRDNDPSAHAEVNA 117
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ A ++ RGAT Y + E C
Sbjct: 118 IRAACKKVGAPNLRGATMYTSCECCPMC 145
>gi|289435993|ref|YP_003465865.1| cytidine/deoxycytidylate deaminase family protein [Listeria
seeligeri serovar 1/2b str. SLCC3954]
gi|289172237|emb|CBH28783.1| cytidine/deoxycytidylate deaminase family protein [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 156
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL + G + ++V DG +IGR T+ HAE+ A+++
Sbjct: 5 FFMQQALVEAEKAREIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQD 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A GA YVTLEPC
Sbjct: 61 ACNHQKSWRLSGAELYVTLEPCPMCS 86
>gi|228478058|ref|ZP_04062669.1| tRNA-specific adenosine deaminase [Streptococcus salivarius
SK126]
gi|228250238|gb|EEK09491.1| tRNA-specific adenosine deaminase [Streptococcus salivarius
SK126]
Length = 172
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
FMS AL+ + + + C+IVKDG V+GRG A HAEV A++EA
Sbjct: 11 FFMSEALKEAEKSLDKAEI--PIGCVIVKDGEVVGRGHNAREELNQAIMHAEVMAIQEAN 68
Query: 65 E-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 69 RTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|312959178|ref|ZP_07773697.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
fluorescens WH6]
gi|311286948|gb|EFQ65510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
fluorescens WH6]
Length = 165
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S D FM AL + +G V ++V+DG +IGRG HAE+
Sbjct: 13 SRDQHFMREALALAAQGAVLGEV----PVGAVLVQDGEIIGRGFNCPISGNDPSAHAEMV 68
Query: 59 -----ALEEAGEEARGATAYVTLEPCSHY 82
A + G+T YVTLEPCS
Sbjct: 69 AIRAAARAISNYRLVGSTLYVTLEPCSMC 97
>gi|162446945|ref|YP_001620077.1| Zn dependent nucleoside deaminase [Acholeplasma laidlawii PG-8A]
gi|161985052|gb|ABX80701.1| probable Zn dependent nucleoside deaminase [Acholeplasma
laidlawii PG-8A]
Length = 146
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
FM+ AL+ ++ V ++V DG +I R HAE A+E+A
Sbjct: 7 EYFMNEALKEAKKA--NDKDEVPVGAVVVLDGKIIARAHNLRESRQSIHAHAEFLAIEKA 64
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ A YVTLEPC
Sbjct: 65 AKKIGSWRLENADVYVTLEPCPMC 88
>gi|255007517|ref|ZP_05279643.1| cytosine deaminase [Bacteroides fragilis 3_1_12]
gi|313145211|ref|ZP_07807404.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313133978|gb|EFR51338.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 145
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ FM AL + G P V ++V +I R T HAE+QA+
Sbjct: 3 DDSYFMKQALVEAAKA-GERGEVP-VGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ T YVT+EPC CA I ++V +D
Sbjct: 61 AAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQRYAP 114
Query: 117 QWLSQKGIIV 126
+ L K ++V
Sbjct: 115 KSLHPKTVVV 124
>gi|288926032|ref|ZP_06419961.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
buccae D17]
gi|288337252|gb|EFC75609.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
buccae D17]
Length = 147
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M D ++M AL+ + P + ++V G +I R T + HAE
Sbjct: 1 MEQLEVDEQYMRKALQEAE-AACQKGEIP-IGAVVVCKGRIISRAHNLTETLHDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+QA+ A G+ T YVT+EPC CA I + R+V D
Sbjct: 59 MQAITAAADLLGGKYLTDCTLYVTVEPC------TMCAGAIGWAQVPRIVYGAPDEKRGY 112
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
+ K IV ++E E + + +
Sbjct: 113 RHYAPHAMHPKADIVGGILEDECRELMQKFF 143
>gi|325270697|ref|ZP_08137293.1| tRNA-specific adenosine deaminase [Prevotella multiformis DSM
16608]
gi|324986992|gb|EGC18979.1| tRNA-specific adenosine deaminase [Prevotella multiformis DSM
16608]
Length = 199
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 17/147 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M AL + P V ++V +I R T HAE+QA+
Sbjct: 57 KKDLYYMRQALAEAE-AAYREGEIP-VGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAI 114
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
A G+ + T YVTLEPC CA I +RR+V D
Sbjct: 115 TMAASGLGGKYLQDCTLYVTLEPC------TMCAGAIGWAQLRRMVYGCPDEKRGYRLYA 168
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
+ L + +V +ME E K + +
Sbjct: 169 PRALHPRAEVVCGVMEEECKALMQRFF 195
>gi|322374121|ref|ZP_08048655.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C150]
gi|321277087|gb|EFX54158.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C150]
Length = 172
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
FMS AL+ ++ + + C+IVKDG ++GRG A HAEV A++EA
Sbjct: 11 FFMSEALKEAQKSLDKAEI--PIGCVIVKDGEIVGRGHNAREELNQAIMHAEVMAIQEAN 68
Query: 65 E-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 69 RTIGNWRLLDCTLFVTIEPCVMCS 92
>gi|238882595|gb|EEQ46233.1| DRAP deaminase [Candida albicans WO-1]
Length = 589
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 12/152 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
+FM A+ + G T T +V C++V +G VI G + G HAE AL +
Sbjct: 438 RKFMEMAIEEAEK-CGETQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496
Query: 62 EAGEE--ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
GE G + ++EPCS G P + + I+ V V +PD+ +
Sbjct: 497 NGGEREVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSY 556
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
+ L G+ + E A + +
Sbjct: 557 KKLLDHGVEYIHIPGYEETCLEIAKRGHEHIQ 588
>gi|193077204|gb|ABO11996.2| putative deaminase [Acinetobacter baumannii ATCC 17978]
Length = 158
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A + G V +IV +IG G A G HAE+QA+ A
Sbjct: 1 MQLAYEQAELAAEQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAAC 56
Query: 65 EEARG------ATAYVTLEPCSHY 82
E + AT YVTLEPC+
Sbjct: 57 ESLKNYRLPEDATLYVTLEPCTMC 80
>gi|150395640|ref|YP_001326107.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
gi|150027155|gb|ABR59272.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419]
Length = 149
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AAL+ +R G + +IV +G V+ HAE++A+ A
Sbjct: 7 FMQAALQEARKAAARGEV----PIGAVIVHEGEVVAAAGNRTRELNDITAHAEIEAIRMA 62
Query: 64 -----GEEARGATAYVTLEPCSHY 82
GE GA YVTLEPC+
Sbjct: 63 ATAIGGERLSGADLYVTLEPCTMC 86
>gi|305665590|ref|YP_003861877.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
gi|88710346|gb|EAR02578.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
Length = 149
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + D FM AL+ + G + +IV D +I R H
Sbjct: 1 MILPFDDTYFMKKALQEAEAAYEKGEV----PIGAIIVIDDRIIARAHNLTEQLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ + T YVTLEPC
Sbjct: 57 AEMQAITAAANFLGGKYLQNCTMYVTLEPCQMC 89
>gi|68482658|ref|XP_714726.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
gi|68482929|ref|XP_714595.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
gi|46436176|gb|EAK95543.1| hypothetical protein CaO19.3177 [Candida albicans SC5314]
gi|46436316|gb|EAK95680.1| hypothetical protein CaO19.10687 [Candida albicans SC5314]
Length = 589
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 12/152 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
+FM A+ + G T T +V C++V +G VI G + G HAE AL +
Sbjct: 438 RKFMEMAIEEAEK-CGETQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496
Query: 62 EAGEE--ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
GE G + ++EPCS G P + + I+ V V +PD+ +
Sbjct: 497 NGGEREVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSY 556
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
+ L G+ + E A + +
Sbjct: 557 KKLLDHGVEYIHIPGYEETCLEIAKRGHEHIQ 588
>gi|297170608|gb|ADI21634.1| cytosine/adenosine deaminases [uncultured myxobacterium
HF0130_06F04]
Length = 159
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M AA + +G V L++ + V+GRG HAE+ A+
Sbjct: 4 DESWMQAAFAEAEKARALGEV----PVGALVIYEDRVVGRGFNRRETDHDPLAHAEILAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA + G YVTLEPC
Sbjct: 60 GEAAKTLGRWRLSGCELYVTLEPCPMC 86
>gi|325068553|ref|ZP_08127226.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Actinomyces oris K20]
Length = 111
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ-- 58
++ M ALR + NP V C+I+ DG V+ G G HAEV
Sbjct: 3 SFTTVQTAAMQRALRAAASPDAPPGPNPRVGCVILSPDGDVLAEGHHRGAGTAHAEVDAL 62
Query: 59 -ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
L AG ARG TA VTLEPC+H R+ PC Q +++ G+ V+ DD
Sbjct: 63 ANLAAAGASARGTTAVVTLEPCNHQSRTGPCVQALLDAGVAEVIYAQDD 111
>gi|319399688|gb|EFV87937.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Staphylococcus epidermidis FRI909]
Length = 168
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M A++ + +G + +IVK+ VI R T HAE A+E
Sbjct: 5 HDYMRLAIKEAHKAKALGEV----PIGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIE 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 61 RASEVVGSWRLEECTLYVTLEPCVMC 86
>gi|310828329|ref|YP_003960686.1| alpha amylase catalytic region [Eubacterium limosum KIST612]
gi|308740063|gb|ADO37723.1| alpha amylase catalytic region [Eubacterium limosum KIST612]
Length = 630
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + MS A+ + G V +I+ +G +I H
Sbjct: 483 MTMQDI----MSKAIEEAERGIEEGEV----PVGAVILHNGEIIAAAHNQKETLQDPTAH 534
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ + EA + YVT EPC
Sbjct: 535 AEMLVIREASKKLGRWRLDDCELYVTAEPCPMC 567
>gi|307353941|ref|YP_003894992.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Methanoplanus petrolearius DSM
11571]
gi|307157174|gb|ADN36554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Methanoplanus petrolearius DSM
11571]
Length = 226
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 14/221 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
++T+ +A+S D + V I+G +V +L+A++DAI+VGIGTVLADDP L
Sbjct: 1 MFPYVTVNLAMSADGKLSTIERKQVKISGQDDFRRVDILKAENDAIMVGIGTVLADDPSL 60
Query: 208 TCRLNG--------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
T + ++ +P+RII+D + ++I+ +I V+++ DP
Sbjct: 61 TVKSPELKEKRLSSGRDENPVRIIVDSKARTPCSAEILHKGPGRRIIAVSKSADPKKIDE 120
Query: 260 FRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
K + D R ++ + G+ +L+VEGG ++ S LVD +
Sbjct: 121 LGKYAEIVQAGDERVDLRIFLAKIAEMGIETLMVEGGGSLIWSLFEDDLVDEYYTCIGNV 180
Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+IG P+P + + + S V L++
Sbjct: 181 IIGGASAPTPADGTGFIRENEFTKLEIASMEKIDSGVLLKW 221
>gi|124360458|gb|ABN08468.1| CMP/dCMP deaminase, zinc-binding [Medicago truncatula]
Length = 178
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 3 VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
++S + FM A++ ++ +G + V C+IV+DG VI G HAE+
Sbjct: 1 MTSQETHIFMELAIQQAKLAMG--ALEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEM 58
Query: 58 QALE--------------EAGEEARGATAYVTLEPCSHY 82
+A++ E ++ + YVT EPC
Sbjct: 59 EAIDVLLEQWQKNGLSMTEVAKKFSNCSLYVTCEPCIMC 97
>gi|315612142|ref|ZP_07887058.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
49296]
gi|315315805|gb|EFU63841.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC
49296]
Length = 155
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EAFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NVSEESWRLLNCTLFVTIEPCVMCS 91
>gi|297570087|ref|YP_003691431.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296926002|gb|ADH86812.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 173
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------H 54
M S FM AL +R + P V +IV G V+ G G H
Sbjct: 1 MDQSEQHHYFMGLALEQARVAL-QAGEFP-VGAVIVAGGRVVAEGNRQNSGGTAPTELDH 58
Query: 55 AEVQAL-----EEAGEEARGATAYVTLEPCSHY 82
AE+ AL + E G T Y T+EPC
Sbjct: 59 AEIVALRGLLARQPEIERGGLTLYATMEPCLMC 91
>gi|291532926|emb|CBL06039.1| Cytosine/adenosine deaminases [Megamonas hypermegale ART12/1]
Length = 157
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM A + + ++ T+ +IVKDG ++GRG + HAEV+A+ +A
Sbjct: 4 EEFMLIATQEADSNL-TTNEGGPFGAVIVKDGKIVGRGHNRVLIKHDPTCHAEVEAIRDA 62
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 63 CQNLGTHDLTGCELYTSCYPCPMC 86
>gi|322391142|ref|ZP_08064614.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
700780]
gi|321145895|gb|EFX41284.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC
700780]
Length = 166
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 20 EAFMREALKEAEIALEHDEI--PIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIEDA 77
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 78 NLSEESWRLLDCTLFVTIEPCVMCS 102
>gi|319940016|ref|ZP_08014370.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
1_2_62CV]
gi|319810730|gb|EFW07057.1| tRNA-specific adenosine deaminase [Streptococcus anginosus
1_2_62CV]
Length = 155
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + + C+IVK+G +IGRG A HAEV A+E+A
Sbjct: 9 EFFMREALKEAEIAL--VNDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEVMAIEKA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ T +VT+EPC
Sbjct: 67 NQHEHSWRLLDTTLFVTIEPCVMCS 91
>gi|222147690|ref|YP_002548647.1| cytidine and deoxycytidylate deaminase [Agrobacterium vitis S4]
gi|221734678|gb|ACM35641.1| cytidine and deoxycytidylate deaminase [Agrobacterium vitis S4]
Length = 149
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M ++ RFM AL ++ G + ++VK+G+++ R H
Sbjct: 1 MTLT---IRFMDVALEEAQLAGARGEV----PIGAVLVKNGVILARAGNETRALQDVTAH 53
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ A E GA YVTLEPC+
Sbjct: 54 AEILAIRRACAILEDERLAGADLYVTLEPCTMC 86
>gi|213157131|ref|YP_002319176.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
AB0057]
gi|215483589|ref|YP_002325810.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
AB307-0294]
gi|239502187|ref|ZP_04661497.1| putative deaminase [Acinetobacter baumannii AB900]
gi|301345934|ref|ZP_07226675.1| putative deaminase [Acinetobacter baumannii AB056]
gi|213056291|gb|ACJ41193.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
AB0057]
gi|213987060|gb|ACJ57359.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii
AB307-0294]
Length = 158
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A + G V +IV +IG G A G HAE+QA+ A
Sbjct: 1 MQLAYEQAELAAKQGEI----PVGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAAC 56
Query: 65 EEARG------ATAYVTLEPCSHY 82
E + AT YVTLEPC+
Sbjct: 57 ESLKNYRLPEDATLYVTLEPCTMC 80
>gi|315040523|ref|XP_003169639.1| tRNA-specific adenosine deaminase subunit TAD2 [Arthroderma
gypseum CBS 118893]
gi|311346329|gb|EFR05532.1| tRNA-specific adenosine deaminase subunit TAD2 [Arthroderma
gypseum CBS 118893]
Length = 189
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M S FM ALR + + G T V C++V VIG G+ + G H
Sbjct: 4 MSNLSKHEVFMKMALRMAETALAVGET----PVGCVLVNKDKVIGSGMNDTNKSLNGTRH 59
Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
AE A+EEA YVT+EPC
Sbjct: 60 AEFLAIEEALRSHPRSILHETDLYVTVEPCIMC 92
>gi|86134359|ref|ZP_01052941.1| cytidine and deoxycytidylate deaminase [Polaribacter sp. MED152]
gi|85821222|gb|EAQ42369.1| cytidine and deoxycytidylate deaminase [Polaribacter sp. MED152]
Length = 149
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M D FM A + + G V +IV + +I R T H
Sbjct: 1 MIEPFDDTYFMKKAYQEAEIAFDKGEI----PVGAVIVLNNQIIARAHNLTETLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA A G+ + YVTLEPC
Sbjct: 57 AEMQAFTAAANFLGGKYLKDCILYVTLEPCQMC 89
>gi|329961864|ref|ZP_08299878.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides fluxus YIT 12057]
gi|328531304|gb|EGF58148.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides fluxus YIT 12057]
Length = 144
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ +M AL ++ G P V ++V +I R T HAE+QA+
Sbjct: 2 DDSYYMKQALLEAQKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAIT 59
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ YVT+EPC CA I ++V +D
Sbjct: 60 AAASTLGGKYLNECALYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQRYAP 113
Query: 117 QWLSQKGIIV 126
Q L K ++V
Sbjct: 114 QALHPKTMVV 123
>gi|330443784|ref|YP_004376770.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
pecorum E58]
gi|328806894|gb|AEB41067.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
pecorum E58]
Length = 156
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + + FM+ AL+ +R + V C++VKD +I RG + HAE
Sbjct: 1 MSI-EKNLFFMNEALKEARKA--YSQDEVPVGCVLVKDDKIIARGHNSVEKLQDPTAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ + A E T Y TLEPC
Sbjct: 58 ILCIGAAAEFVQNWRLVNTTLYCTLEPCLMC 88
>gi|326470308|gb|EGD94317.1| tRNA-specific adenosine deaminase subunit Tad2p/ADAT2
[Trichophyton tonsurans CBS 112818]
gi|326481147|gb|EGE05157.1| cytidine and deoxycytidylate deaminase [Trichophyton equinum CBS
127.97]
Length = 189
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M S FM AL+ + + G T V C++V VIG G+ + G H
Sbjct: 4 MSNLSKHEVFMKMALKMAETALAVGET----PVGCVLVNKDRVIGSGMNDTNKSLNGTRH 59
Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
AE A+EEA R YVT+EPC
Sbjct: 60 AEFLAIEEALRSYPRSIFRETDLYVTVEPCIMC 92
>gi|325134098|gb|EGC56751.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M13399]
gi|325206234|gb|ADZ01687.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
M04-240196]
Length = 163
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM ALR + G V +IV DG +I HAE+ AL
Sbjct: 17 EHFMREALRQAEQSAADGEI----PVGAVIVSDGKIIASAHNTCIADCNVSCHAEINALA 72
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G Y+TLEPC+
Sbjct: 73 QAGSEMQNYRLDGCDIYITLEPCAMC 98
>gi|319953292|ref|YP_004164559.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola
DSM 14237]
gi|319421952|gb|ADV49061.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola
DSM 14237]
Length = 149
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + D +M AL+ + G V +IV +I R H
Sbjct: 1 MILPFDDTYYMKKALQEAAMAFEKGEV----PVGAIIVIQDRIIARAHNLTEQLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ + T YVTLEPC
Sbjct: 57 AEMQAITAAANFLGGKYLKDCTLYVTLEPCQMC 89
>gi|311030254|ref|ZP_07708344.1| hypothetical protein Bm3-1_06896 [Bacillus sp. m3-13]
Length = 158
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + F+ A+ + +V +I K+ +I GV + HAE
Sbjct: 1 MEM-HLHEFFLHRAIDLALQNVQENGG--PFGAVITKNNQIIAEGVNRVTSNHDPTAHAE 57
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V A+ +A R Y + EPC
Sbjct: 58 VMAIRKACHSLQTFELRDCILYSSCEPCPMC 88
>gi|218891523|ref|YP_002440390.1| putative deaminase [Pseudomonas aeruginosa LESB58]
gi|218771749|emb|CAW27523.1| probable deaminase [Pseudomonas aeruginosa LESB58]
Length = 151
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DEIFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPRLDGCVIYASGHPCPMC 85
>gi|118602884|ref|YP_904099.1| CMP/dCMP deaminase, zinc-binding [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567823|gb|ABL02628.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 156
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
M +S DA++M+ A+ ++ + P V +++++ +I HA
Sbjct: 1 MGISAPTDAQWMTLAIEQAKQAQ-KVNEVP-VGAILIQNNQLISSAYNQPISNNDPTAHA 58
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+Q L AG++ T YVTLEPC+
Sbjct: 59 EIQLLRAAGKQLNNYRLYDTTLYVTLEPCTMC 90
>gi|29347644|ref|NP_811147.1| putative cytosine/adenosine deaminase [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339545|gb|AAO77341.1| putative cytosine/adenosine deaminase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 147
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 21/135 (15%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
++ D FM AL + G V ++V +I R T HAE
Sbjct: 2 MTLDDTYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAE 57
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+QA+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 58 MQAITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDDKRGY 111
Query: 112 SGRGLQWLSQKGIIV 126
Q L K ++V
Sbjct: 112 QRYAAQALHPKTVVV 126
>gi|294795071|ref|ZP_06760206.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
protein [Veillonella sp. 3_1_44]
gi|294454433|gb|EFG22807.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
protein [Veillonella sp. 3_1_44]
Length = 164
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S D FM AL + +G + ++V++ +I R H
Sbjct: 13 MDERSRDEYFMGFALEEAHKAYALGEI----PIGAILVQNNTIISRHHNRRELDHDATAH 68
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV + EA + G T YVT+EPC
Sbjct: 69 AEVLVIREACDVLKRWRLTGCTLYVTIEPCPMC 101
>gi|52783876|ref|YP_089705.1| YaaJ [Bacillus licheniformis ATCC 14580]
gi|52346378|gb|AAU39012.1| YaaJ [Bacillus licheniformis ATCC 14580]
Length = 162
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M ++ D +M A+ +R G + ++V DG +I R T H
Sbjct: 1 MRMT-QDEFYMKEAVNEARKAEEKGEV----PIGAVLVLDGEIIARAHNLRETEQRSVAH 55
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ +EEA A YVTLEPC
Sbjct: 56 AEMLVIEEACRKLGTWRLERAVLYVTLEPCPMC 88
>gi|239623044|ref|ZP_04666075.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522411|gb|EEQ62277.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 202
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
D FM A+R + +G + C+IV+ G +I RG HAE+ ++
Sbjct: 54 DEGFMGEAIRQAHKAAALGDV----PIGCVIVRQGQIIARGYNRRNADKSVLSHAEIISI 109
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+ A + T YVTLEPC
Sbjct: 110 KRACKKLGDWRLEDCTMYVTLEPCPMCS 137
>gi|114565589|ref|YP_752743.1| hypothetical protein Swol_0013 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114336524|gb|ABI67372.1| tRNA-adenosine deaminase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 151
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
FM AL +R P V ++V +G +I R HAE+ AL+
Sbjct: 2 QHEDFMRHALEEAREA-YKRGEIP-VGAIVVHNGKIIARAHNEKESYQDATAHAEMLALQ 59
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + Y TLEPC
Sbjct: 60 RAARHLGHWRLNESVLYCTLEPCVMC 85
>gi|328952357|ref|YP_004369691.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452681|gb|AEB08510.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
DSM 11109]
Length = 167
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+ D +M A+ ++ + V +++ K G +IG+G HAE+ A
Sbjct: 18 AIDQAYMCLAIGEAKKA--SSLQEVPVGAVVIDKAGKIIGQGHNQPIASHDPSAHAEIVA 75
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A T YVTLEPC
Sbjct: 76 LRQASACSRNYRLPDCTMYVTLEPCIMC 103
>gi|269929210|ref|YP_003321531.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
thermophilus DSM 20745]
gi|269788567|gb|ACZ40709.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter
thermophilus DSM 20745]
Length = 257
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 16/223 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R T+ A + D I S ++ S H LRA+ DAILVGIGTVLADDP L
Sbjct: 32 DRPWATVAYAQTLDGRIATRSGDSRWVSCPDSLTFAHCLRAEHDAILVGIGTVLADDPRL 91
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T RL R+ILD +L LD+ +++ ++VT P L +
Sbjct: 92 TTRLVAGPSPM--RVILDSRLRLPLDAAVLRDGAADQTLVVTTAQAPPERLDCIRDTGAR 149
Query: 268 IYCDCRDLK------KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ L G+ +LL+EGGA + + + +VD + + + ++G
Sbjct: 150 VIVATGHPGGGVDLADAFHQLRELGIRTLLIEGGARTITAALRAGVVDRLAVCIAPKILG 209
Query: 322 EGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
GI + ++ R G D+ L ++C
Sbjct: 210 A-GIEAVGDLGIDRLADALPLQRRRVLLAGDDLILIG---DIC 248
>gi|299820898|ref|ZP_07052787.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
gi|299817919|gb|EFI85154.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601]
Length = 173
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM A++ +R +G + ++V D +IGRG T HAE+ A++ A
Sbjct: 19 FMEEAIKEARKAQALGEV----PIGAVVVLDNEIIGRGHNLRETTQNAITHAEILAIQAA 74
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ A YVTLEPC
Sbjct: 75 CQNRESWRLSEAEIYVTLEPCPMCS 99
>gi|296329638|ref|ZP_06872123.1| guanine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674035|ref|YP_003865707.1| guanine deaminase [Bacillus subtilis subsp. spizizenii str. W23]
gi|296153136|gb|EFG94000.1| guanine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412279|gb|ADM37398.1| guanine deaminase [Bacillus subtilis subsp. spizizenii str. W23]
Length = 156
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ +R V LIVKDG +I G T+ HAEV A+
Sbjct: 3 HETFLKRAVDLARDGV-NAGVGGPFGALIVKDGSIIAEGQNNVTTSNDPTAHAEVTAIRN 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 62 ACKALGTFQLDDCILYTSCEPCPMC 86
>gi|283477539|emb|CAY73455.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae DSM 12163]
Length = 157
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M ALR +R G V ++V DG IG G G HAE+ AL + G
Sbjct: 1 MRHALRLARRAWDEGEV----PVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQGG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 57 KVIENYRLLDTTLYVTLEPCVMC 79
>gi|283779562|ref|YP_003370317.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
gi|283438015|gb|ADB16457.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
Length = 160
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M +D F+ AA+ +R +V + ++VK+G +IGRG HAE
Sbjct: 1 MTSPHYDHEFLEAAIELARENV-RSGKGGPFGSVVVKEGKIIGRGENRVTSSLDPSAHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ +A + G T Y + +PC
Sbjct: 60 IVAIRDACQQQQNFSLAGTTIYASCQPCPMC 90
>gi|170084365|ref|XP_001873406.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650958|gb|EDR15198.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 237
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+TL A S D I + ++G S H LR+ DAILVGIGT L DDP+L
Sbjct: 22 PHVTLTFAQSTDAKIAAIPGKQLILSGDESMQMTHWLRSMHDAILVGIGTALNDDPQLNT 81
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL-----APVIIVTENDDPV------LAL 258
R + P IILD H +LS K++ +I D L
Sbjct: 82 RRLPPPHNLPRPIILDSHLRLSTSCKLLNNFRAGSGRRPWIISTPSQDPSWISRKDALEQ 141
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
A + +L L R V SL+VEGGA V SF ++ +VD++I+ +
Sbjct: 142 AGANIIEIPSLNGRLSVPAVLQSLRDRDVRSLMVEGGATVIASFFSASVVDTLIITTAPT 201
Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
++G+ G+ L + + F G D ++
Sbjct: 202 LVGDNGLGYTLAGSH--QQFTLAHTQLLGKDTVTSWV 236
>gi|57866115|ref|YP_187800.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
epidermidis RP62A]
gi|242241897|ref|ZP_04796342.1| deaminase [Staphylococcus epidermidis W23144]
gi|251809981|ref|ZP_04824454.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
gi|282874984|ref|ZP_06283859.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis SK135]
gi|57636773|gb|AAW53561.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus
epidermidis RP62A]
gi|242234675|gb|EES36987.1| deaminase [Staphylococcus epidermidis W23144]
gi|251806524|gb|EES59181.1| deaminase [Staphylococcus epidermidis BCM-HMP0060]
gi|281296312|gb|EFA88831.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Staphylococcus epidermidis SK135]
Length = 168
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M A+ + +G + +IVK+ VI R T HAE A+E
Sbjct: 5 HDYMRLAINEAHKAKALGEV----PIGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIE 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 61 RASEVVGSWRLEECTLYVTLEPCVMC 86
>gi|145628165|ref|ZP_01783966.1| preprotein translocase subunit SecA [Haemophilus influenzae
22.1-21]
gi|144979940|gb|EDJ89599.1| preprotein translocase subunit SecA [Haemophilus influenzae
22.1-21]
Length = 159
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL + +G V ++V D G +IG G HAE+ AL
Sbjct: 1 MRYALELADKAEALGEI----PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIALRNG 56
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + +T YVTLEPC+
Sbjct: 57 AKNIQNYRLLNSTLYVTLEPCTMC 80
>gi|325279197|ref|YP_004251739.1| Guanine deaminase [Odoribacter splanchnicus DSM 20712]
gi|324311006|gb|ADY31559.1| Guanine deaminase [Odoribacter splanchnicus DSM 20712]
Length = 156
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+FM A+R + + G ++VK+G +I HAEV A
Sbjct: 4 EKFMREAIRLAVENVKQGTGG-----PFGAVVVKEGKIIAACANTVTPDCDPTAHAEVNA 58
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ EA + G Y + EPC
Sbjct: 59 IREACRKLDTFQLGGCEIYASCEPCPMC 86
>gi|261884015|ref|ZP_06008054.1| riboflavin biosynthesis protein
(diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Campylobacter fetus subsp. venerealis str. Azul-94]
Length = 213
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
A + D I S IT ++ VH+LR + AI+VG+ TV+AD+PELT R+
Sbjct: 1 ASTLDGKIATYTGDSKWITSPEARYDVHVLRNEHMAIMVGVNTVVADNPELTTRIPN--G 58
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL---AFRKKNINIIYCDCR 273
+P+RII+D ++ +DSK++ L +I + N D + K
Sbjct: 59 RNPIRIIMDSTLRIPIDSKVVTDGLAETLIFTSVNYDVEKRKVLESKGVKVFPTTGTVHT 118
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
D + +L + ++S+L+EGG ++ +F+ +RLVD + Y + +IG P+
Sbjct: 119 DPHDVARLLGEQNISSVLIEGGGSIHSAFLENRLVDKGVHYFAPKLIGGQFAPTFFRG 176
>gi|260584497|ref|ZP_05852244.1| cytidine/deoxycytidylate deaminase [Granulicatella elegans ATCC
700633]
gi|260158015|gb|EEW93084.1| cytidine/deoxycytidylate deaminase [Granulicatella elegans ATCC
700633]
Length = 170
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM AL+ ++ + ++V +G +IGRG HAE++A+ +A
Sbjct: 10 EMFMREALKEAQKAYDK--EEVPIGAVVVLNGEIIGRGHNLREKEQDATLHAEIKAIRQA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ +VTLEPC
Sbjct: 68 NQVLGSWRLEDCELFVTLEPCPMCS 92
>gi|326624390|gb|EGE30735.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 161
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-- 64
M AL ++ V ++V + VIG G G HAE+ AL + G
Sbjct: 1 MRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 LQNYRLLDTTLYVTLEPCVMC 79
>gi|218245420|ref|YP_002370791.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 8801]
gi|218165898|gb|ACK64635.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8801]
Length = 230
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 10/205 (4%)
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--LADDPELTCRLNGLQEHS 218
+ + + A L T + + L R +
Sbjct: 23 NQRHPARFGSDTDKAHLEKQISLVDGVLFGAATLAAYQTTLLIKNPELLADRQQQKKPLQ 82
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRD 274
P+ I++ K++ + + + ++ + II D
Sbjct: 83 PINIVVSGSGKINPNLRFFSQEVPRWLLTTMPGSIVAKKSNHQAFEKTIIADSKDLKKID 142
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K +L G+ + + GG + S + L+D + L +++G P+P+E
Sbjct: 143 FIKAFLVLKELGLNKVAILGGGELLASLLEVNLIDELWLTICPLILGGTTSPTPVEGLGF 202
Query: 335 ----EKNFMCVRRDYFGSDVCLEYI 355
K + + ++ L Y
Sbjct: 203 SYDQAKRLQLLTVESIDQEIFLHYR 227
>gi|331265454|ref|YP_004325084.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
oralis Uo5]
gi|326682126|emb|CBY99742.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
oralis Uo5]
Length = 155
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 ESFMREALKEAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|147921689|ref|YP_684491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured
methanogenic archaeon RC-I]
gi|110619887|emb|CAJ35165.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine
1-reductase (riboflavin-specific deaminase) [uncultured
methanogenic archaeon RC-I]
Length = 226
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 14/223 (6%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R + + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP
Sbjct: 1 MLDRPYTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRAGSDAVMVGIGTVLADDP 60
Query: 206 --------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
R+ ++ +P R+++D + + I K +++V++
Sbjct: 61 SLTVKSEERRKRRVAEGKDENPARVVVDSQARTPPTADIFKKGTGKRIVVVSQAAPADRV 120
Query: 258 LA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
A K I + D DL+++ L RG+ L++EGGA + ++ ++ RLVD I ++
Sbjct: 121 AALKEKAEIIVCGKDEVDLEQMSVELKKRGINRLMIEGGATLNYAMVSRRLVDEISVFVG 180
Query: 317 QIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354
++IG P+ ++ + + ++ + + L +
Sbjct: 181 NLIIGGKDAPTFMDGPGIAERSEAVELRLMKYEQMDEGIVLTW 223
>gi|293364574|ref|ZP_06611295.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
35037]
gi|307702826|ref|ZP_07639774.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
35037]
gi|291316832|gb|EFE57264.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
35037]
gi|307623506|gb|EFO02495.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC
35037]
Length = 155
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EAFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NVSEESWRLLDCTLFVTIEPCVMCS 91
>gi|224373556|ref|YP_002607928.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
gi|223589572|gb|ACM93308.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH]
Length = 325
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 25/307 (8%)
Query: 15 LRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA-TA 72
+ + + LT NP+V +IVK+ I GV G PHAEV AL EA A
Sbjct: 14 INEAWKYQFLTYPNPAVGAAVIVKNQ--IFTGVHKKAGEPHAEVHALWEAYRAFHDAPEL 71
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
Y + E + + V + + + K V
Sbjct: 72 YTSKEIHEYLKKHHNG---FFNDANVYVTLEPCAHEGKTPSCAYLLKELKPKSVSIGWPD 128
Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
K + K S I +KI + P + ++ + L +
Sbjct: 129 PIKGHGGGVE---ILKNSGIDVKILNDKRCFHL-----IEPFIKWQNRFVFYKLALTMNG 180
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
+ G + + + + + + +LD++ + AP +++ +
Sbjct: 181 AITGGYISSDESLDWVHNIRDKIDLLVIGGNTVRIDRPTLDARRVNG--KAPDVLIYSKN 238
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
D + N L+KL +++EGG + + +VD +
Sbjct: 239 DGIERDIPLFNVKNRKVFIEDSLEKLEDYKF------IMIEGGERLYNEI--KHMVDWKV 290
Query: 313 LYRSQIV 319
S
Sbjct: 291 FIVSPKF 297
>gi|107101945|ref|ZP_01365863.1| hypothetical protein PaerPA_01002992 [Pseudomonas aeruginosa
PACS2]
gi|254235497|ref|ZP_04928820.1| hypothetical protein PACG_01415 [Pseudomonas aeruginosa C3719]
gi|254240930|ref|ZP_04934252.1| hypothetical protein PA2G_01610 [Pseudomonas aeruginosa 2192]
gi|126167428|gb|EAZ52939.1| hypothetical protein PACG_01415 [Pseudomonas aeruginosa C3719]
gi|126194308|gb|EAZ58371.1| hypothetical protein PA2G_01610 [Pseudomonas aeruginosa 2192]
Length = 151
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DEIFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPRLDGCVIYASGHPCPMC 85
>gi|91792629|ref|YP_562280.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
gi|91714631|gb|ABE54557.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
Length = 177
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VKD ++ G + HAE+ +
Sbjct: 21 DEHWMRVAMSMAEEAEAKGEV----PVGAVLVKDNQLLATGFNLSISEHDCSAHAEMACI 76
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG T YVTLEPC
Sbjct: 77 RAAGTLIENYRLLDTTLYVTLEPCPMC 103
>gi|270291666|ref|ZP_06197882.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. M143]
gi|270279751|gb|EFA25592.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. M143]
Length = 155
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVK+G +IGRG A HAE+ A+E A
Sbjct: 9 EAFMREALREAEIALEHDEI--PIGCVIVKNGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NASEESWRLLDCTLFVTIEPCVMCS 91
>gi|90422427|ref|YP_530797.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
BisB18]
gi|90104441|gb|ABD86478.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB18]
Length = 148
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
FM AL+ + + G + C+IV + VI +T HAEV A+ +A
Sbjct: 6 FMDLALKAAETAQNAGEV----PIGCVIVLNNAVIASAGNRTLTDRDPTAHAEVLAIRQA 61
Query: 64 -----GEEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 62 AAALGSERLSGCDLYVTLEPCTMC 85
>gi|282891324|ref|ZP_06299826.1| hypothetical protein pah_c050o112 [Parachlamydia acanthamoebae
str. Hall's coccus]
gi|281498821|gb|EFB41138.1| hypothetical protein pah_c050o112 [Parachlamydia acanthamoebae
str. Hall's coccus]
Length = 176
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +FM AL+ + P V ++V +G +I RG HAEV +
Sbjct: 12 DEDEKFMLEALKQAWKA-FQAKEVP-VGAILVHEGKIIARGYNQVELLRDATAHAEVLCI 69
Query: 61 EEAGE------EARGATAYVTLEPCSHY 82
AGE Y T+EPC+
Sbjct: 70 T-AGEAALSNWRLSQCKLYCTIEPCAMC 96
>gi|227328190|ref|ZP_03832214.1| tRNA-specific adenosine deaminase [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 158
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M AL ++ G V ++V D IG G G HAE+ AL + G
Sbjct: 1 MRYALTLAQRAQDEGEV----PVGAVLVLDNEAIGEGWNRPIGHHDPTAHAEIMALRQGG 56
Query: 65 EEARG-----ATAYVTLEPCSHY 82
+ + T YVTLEPC
Sbjct: 57 QVLQNYRLLETTLYVTLEPCIMC 79
>gi|213403097|ref|XP_002172321.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
[Schizosaccharomyces japonicus yFS275]
gi|212000368|gb|EEB06028.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
[Schizosaccharomyces japonicus yFS275]
Length = 147
Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL---- 60
++++ AL ++ T T V +IV++G V+ G + G HAE A+
Sbjct: 1 MHSKYLRLALDEAKK-CNPTDTAFCVGSVIVENGQVVSTGYSRELPGNTHAEESAILKLL 59
Query: 61 -EEAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ + + Y T+EPCS + PC Q II +VV+ +P V G++
Sbjct: 60 QRDPKHDFTRSVIYSTMEPCSKRLSGNVPCTQHIIANKFHKVVLGCREPTTFVVCEGVRQ 119
Query: 119 LSQKGIIVDRMMESEGKI 136
L GIIV+ ++ + +
Sbjct: 120 LQAAGIIVEEDLQFQDEC 137
>gi|163119172|ref|YP_077304.2| putative cytidine/deoxycytidylate deaminase, zinc-binding region
YaaJ [Bacillus licheniformis ATCC 14580]
gi|145902675|gb|AAU21666.2| putative Cytidine/deoxycytidylate deaminase, zinc-binding region
YaaJ [Bacillus licheniformis ATCC 14580]
Length = 196
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M ++ D +M A+ +R G + ++V DG +I R T H
Sbjct: 35 MRMT-QDEFYMKEAVNEARKAEEKGEV----PIGAVLVLDGEIIARAHNLRETEQRSVAH 89
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ +EEA A YVTLEPC
Sbjct: 90 AEMLVIEEACRKLGTWRLERAVLYVTLEPCPMC 122
>gi|149182698|ref|ZP_01861165.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus sp. SG-1]
gi|148849608|gb|EDL63791.1| probable cytidine/deoxycytidylate deaminase family protein
[Bacillus sp. SG-1]
Length = 173
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM A+ ++ + ++V DG VI T HAE+ A+EEA
Sbjct: 6 EYFMKLAIDEAKKAEDKAEV--PIGAVVVLDGEVIASAHNLRETTQNAVTHAELLAIEEA 63
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ A YVTLEPC
Sbjct: 64 CKKLGTWRLENAELYVTLEPCPMCS 88
>gi|282163607|ref|YP_003355992.1| putative deaminase [Methanocella paludicola SANAE]
gi|282155921|dbj|BAI61009.1| putative deaminase [Methanocella paludicola SANAE]
Length = 154
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D +M A+ +R G+ IVKDG V+G HAE+ + E
Sbjct: 3 DEDYMRLAIEKARE--GVRHGQLPFGACIVKDGKVVGCAHNTILRDKNLTAHAEINTIHE 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G T Y T EPC
Sbjct: 61 ACHVFDSLDLSGCTIYCTCEPCPMC 85
>gi|256420111|ref|YP_003120764.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
gi|256035019|gb|ACU58563.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
Length = 146
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D +M ALR +R G V ++V +IG+G HAE+ A
Sbjct: 2 DDKYYMQQALREARKAFDAGEV----PVGAIVVLSDKIIGKGSNQVEMLNDCTAHAEMLA 57
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
L A + AT YVTLEPC
Sbjct: 58 LTAAFNYLGSKYLMEATLYVTLEPCLMC 85
>gi|322376101|ref|ZP_08050611.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C300]
gi|321279051|gb|EFX56094.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C300]
Length = 155
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EAFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NVSEESWRLLDCTLFVTIEPCVMCS 91
>gi|312864368|ref|ZP_07724601.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus downei F0415]
gi|311100089|gb|EFQ58300.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus downei F0415]
Length = 157
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 1 MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----H 54
M + D + FM AL+ ++ + + C+IVKDG +IGRG A H
Sbjct: 1 MADFTHDQKKAFMQEALKEAQKSL--AKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMH 58
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
AE+ A+ +A + + +VT+EPC
Sbjct: 59 AEIMAINQANQTEGNWRLLDSALFVTIEPCVMCS 92
>gi|309800211|ref|ZP_07694392.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
infantis SK1302]
gi|308116152|gb|EFO53647.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
infantis SK1302]
Length = 166
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALKEAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NVREESWRLLDCTLFVTIEPCVMCS 91
>gi|237745836|ref|ZP_04576316.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
gi|229377187|gb|EEO27278.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS]
Length = 150
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM AAL + G V ++V +G VI G + HAE+ AL
Sbjct: 3 DDVFMRAALDQAALAKEAGEV----PVGAVVVLEGRVIASGFNCPISRHDPTAHAEIMAL 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + YVTLEPCS
Sbjct: 59 RNAAKICGNYRLPACELYVTLEPCSMC 85
>gi|168187922|ref|ZP_02622557.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
Eklund]
gi|169294234|gb|EDS76367.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str.
Eklund]
Length = 147
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+FM AL ++ + V +IV++G +I HAE+ A+++A
Sbjct: 3 KKFMDIALDEAKLAMEK--DEVPVGAVIVRNGEIIASAHNLRETLNDPTAHAEMLAIKKA 60
Query: 64 GEEARG-----ATAYVTLEPCSHY 82
+ YVTLEPC
Sbjct: 61 SSVLKNWRLNECEMYVTLEPCPMC 84
>gi|17230776|ref|NP_487324.1| cytosine deaminase [Nostoc sp. PCC 7120]
gi|17132379|dbj|BAB74983.1| cytosine deaminase [Nostoc sp. PCC 7120]
Length = 143
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D FM AA++ ++ + ++VKDG ++GRG HAE+ L
Sbjct: 1 MDE-FMQAAIQEAKQGRQEGGI--PIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG RG T Y TL PC
Sbjct: 58 NAGRIGSYRGTTLYSTLMPCYLC 80
>gi|328956593|ref|YP_004373979.1| tRNA specific adenosine deaminase [Carnobacterium sp. 17-4]
gi|328672917|gb|AEB28963.1| tRNA specific adenosine deaminase [Carnobacterium sp. 17-4]
Length = 174
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M + FM A++ + + ++V +G +IGRG HAE
Sbjct: 1 MLTTEDKTYFMQEAIKEAHKAEEKLEV--PIGAIVVLNGKIIGRGHNRREESNDATTHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ A++EA A +VTLEPC
Sbjct: 59 MLAIQEANRYLGNWRLEEAQLFVTLEPCPMCS 90
>gi|29840517|ref|NP_829623.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
caviae GPIC]
gi|29834866|gb|AAP05501.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
caviae GPIC]
Length = 157
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM+ AL+ +R V C+IVKD +I RG HAE+ +
Sbjct: 4 EKDIFFMNQALKEARQAYDQ--DEVPVGCVIVKDNKIIARGHNTTEKFQDPTAHAEILCI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + Y TLEPC
Sbjct: 62 GAAAQYLENWRLVDTVLYCTLEPCLMC 88
>gi|322388496|ref|ZP_08062098.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
700779]
gi|321140614|gb|EFX36117.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC
700779]
Length = 166
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C+IVKDG VIGRG A HAE+ A+E A
Sbjct: 20 EAFMREALKEAEIALEHDEI--PIGCVIVKDGKVIGRGHNAREELQRAVMHAEIMAIENA 77
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 78 NLSEESWRLLDCTLFVTIEPCVMCS 102
>gi|284028320|ref|YP_003378251.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
17836]
gi|283807613|gb|ADB29452.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
17836]
Length = 144
Score = 76.9 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + G + ++V G VIGRG HAEV A+ A
Sbjct: 1 MELALAEAEHARGSADV--PIGAVVVDAGGEVIGRGHNEREATGDPTAHAEVLAIRAAAR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 HVGEWRLTGCTLVVTLEPCTMC 80
>gi|294792948|ref|ZP_06758094.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
protein [Veillonella sp. 6_1_27]
gi|294455893|gb|EFG24257.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family
protein [Veillonella sp. 6_1_27]
Length = 164
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M + D FM+ AL + +G + ++V++ +I R H
Sbjct: 13 MDERTRDEYFMAFALEEAHKAYDLGEI----PIGAILVQNNTIISRHHNRRELDHDATAH 68
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AEV + EA G T YVT+EPC
Sbjct: 69 AEVLVIREACGVLKRWRLTGCTLYVTIEPCPMC 101
>gi|124266938|ref|YP_001020942.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
gi|124259713|gb|ABM94707.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1]
Length = 205
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 1 MPVSS----FDARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DG--IVIGRGVTAY- 49
M S+ D M AL ++ G V +IV+ DG V+ G
Sbjct: 1 MSDSAEQARKDEAAMRLALDQAQNAWLVGEV----PVGAVIVREVDGVHQVVATGYNRPI 56
Query: 50 ---GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ AL A + YVTLEPC+
Sbjct: 57 TTHDPTAHAEIVALRHAAQLLGNYRLPDCELYVTLEPCAMC 97
>gi|258649234|ref|ZP_05736703.1| tRNA-specific adenosine deaminase [Prevotella tannerae ATCC
51259]
gi|260850414|gb|EEX70283.1| tRNA-specific adenosine deaminase [Prevotella tannerae ATCC
51259]
Length = 143
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV--TAY--GGCPHAEVQAL 60
D +M AL ++ G V +IV +I R T HAE+QA+
Sbjct: 3 DQEYMQKALIEAKQAFEEGEV----PVGAVIVCRDRIIARAHNLTERLTDVTAHAEMQAI 58
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC
Sbjct: 59 TAAANALGGKYLTDCTLYVTVEPCVMC 85
>gi|108763474|ref|YP_633568.1| putative guanine deaminase [Myxococcus xanthus DK 1622]
gi|108467354|gb|ABF92539.1| putative guanine deaminase [Myxococcus xanthus DK 1622]
Length = 153
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 1 MPVSSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
M S+ FM A+ +R G L+V+DG VI R V
Sbjct: 1 MERSA--EEFMREAIALARTNVKSGGR-----PFGALLVRDGRVIARAVNEVNQTKDPTA 53
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+ A + G Y + PC
Sbjct: 54 HAELLAIRNASQSLGSASLSGCVVYASGHPCPMC 87
>gi|332522875|ref|ZP_08399127.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus porcinus str. Jelinkova 176]
gi|332314139|gb|EGJ27124.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus porcinus str. Jelinkova 176]
Length = 176
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HA 55
M S + FM AL+ + + + C+IVK+G +IGRG A HA
Sbjct: 1 MAYSQDEKEFFMREALKEAEKSL--VKAEIPIGCVIVKEGKIIGRGHNAREELNQAIMHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+ EA + +VT+EPC
Sbjct: 59 EIMAINEANVHEGNWRLLETSLFVTIEPCVMCS 91
>gi|238508831|ref|XP_002385598.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
gi|317157687|ref|XP_001826520.2| cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Aspergillus oryzae RIB40]
gi|220688490|gb|EED44843.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
Length = 174
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M S A FM AL + T P V C++V D ++ G+ + G HAE
Sbjct: 1 MEEDSRHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDNQIVSSGMNDTNRSMNGTRHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
ALE R YVT+EPC
Sbjct: 59 FIALERMLRNYPKSLLRSTKLYVTVEPCVMC 89
>gi|298293557|ref|YP_003695496.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM
506]
gi|296930068|gb|ADH90877.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM
506]
Length = 158
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM A+ SR + + P C+IVKDG+++G GV + H EV+A+ +A
Sbjct: 5 EAFMRRAIEISREKMRSDGSAP-FGCVIVKDGVIVGEGVNNVVNNHDATSHGEVEAIRDA 63
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
G + G Y T EPC
Sbjct: 64 GRRLKSWDLSGCELYTTCEPCEMC 87
>gi|254281607|ref|ZP_04956575.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
gi|219677810|gb|EED34159.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B]
Length = 164
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHA 55
M S FD MS AL + + V ++V DG V+ G HA
Sbjct: 1 MTAFSDFDREMMSLALE--KAAMAAAQGEVPVGAVVVMDGKVVATAGNGQIGDCDPTAHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ AL +A GAT Y TLEPC+
Sbjct: 59 EILALRDAARAIRNYRLAGATLYATLEPCTMC 90
>gi|153877830|ref|ZP_02004382.1| cytosine/adenosine deaminase [Beggiatoa sp. PS]
gi|152065706|gb|EDN65618.1| cytosine/adenosine deaminase [Beggiatoa sp. PS]
Length = 156
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 1 MPVS--SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGC 52
MP++ + D ++M AL + G V +I+ I G +
Sbjct: 1 MPLNLLNNDKKWMRHALHLAERAAKQGEI----PVGAVIIHGESCIAEGWNQSILAHDPT 56
Query: 53 PHAEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
HAE+ AL +A + T YVTLEPC
Sbjct: 57 AHAEIVALRKAAHYLKNYRLIDTTLYVTLEPCVMC 91
>gi|326693434|ref|ZP_08230439.1| hypothetical protein LargK3_06881 [Leuconostoc argentinum KCTC
3773]
Length = 169
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL ++ G + +IVKD ++ R HAE+ A+E
Sbjct: 14 YFMQVALNEAKLAATEGEV----PIGAVIVKDNQIVARAHNHREAHQLATAHAELLAIEA 69
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + +VTLEPC
Sbjct: 70 ANDALQSWRLENTALFVTLEPCIMC 94
>gi|224541628|ref|ZP_03682167.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
15897]
gi|224525466|gb|EEF94571.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM
15897]
Length = 147
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D +M+ AL+ + + + C+IV +G +I R HAE+ A+ +
Sbjct: 3 DEEYMAEALKEAEIAMSEDEV--PIGCIIVYEGQIIARTHNQKETLKKATGHAEILAINQ 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A E G T YVTLEPC
Sbjct: 61 ASEYLDLWHLDGCTMYVTLEPCMMC 85
>gi|257058456|ref|YP_003136344.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8802]
gi|256588622|gb|ACU99508.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8802]
Length = 230
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 10/205 (4%)
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--LADDPELTCRLNGLQEHS 218
+ + + A L T + + L R +
Sbjct: 23 NQRHPARFGSDTDKAHLEKQISLVDGVLFGGATLAAYQTTLLIKNPQLLANRQQQKKPLQ 82
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRD 274
P+ I++ K++ + + + ++ + + I D
Sbjct: 83 PINIVVSGSGKINPNLRFFSQEVPRWLLTTMQGSIVAKNSHQQAFEKTIVADSKDLKKID 142
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ +L G+ + + GG + S + L+D + L +++G P+P+E
Sbjct: 143 FIQAFLVLKELGLNKVAILGGGELLASLLEVNLIDELWLTICPLILGGTTSPTPVEGLGF 202
Query: 335 ----EKNFMCVRRDYFGSDVCLEYI 355
K + + ++ L Y
Sbjct: 203 SYDQAKRLQLLTVESIDQEIFLHYR 227
>gi|126732575|ref|ZP_01748373.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
gi|126707021|gb|EBA06089.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37]
Length = 198
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 10/194 (5%)
Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231
ITG +++ VH LRA DA+LVG GT AD+P LT R P+RI+ H L
Sbjct: 2 QWITGPEARHAVHALRATHDAVLVGGGTARADNPRLTVRGYDR-SRPPVRIVASRHLDLP 60
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRG 286
L S + +TA PV + D + + + D LL +L G
Sbjct: 61 LLSDLARTAKDVPVWLCHGADARGDLVTAWEGIGARLMTVPLAGGRLDAAALLKVLGQEG 120
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVR 342
+T + EGG +A S + LVD + + + + +G G P ++ F V
Sbjct: 121 LTRVFCEGGGQLAASLLAQDLVDELHVLTAGLALGAEGHPGIGALGVDRLGEAPRFTLVD 180
Query: 343 RDYFGSDVCLEYIG 356
G D+ +
Sbjct: 181 VCRRGMDIQHVWRR 194
>gi|108805370|ref|YP_645307.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Rubrobacter xylanophilus DSM 9941]
gi|108766613|gb|ABG05495.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Rubrobacter xylanophilus DSM 9941]
Length = 230
Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+TL A + D + A S I+ S + H LRA DA++VG+GTV DDP
Sbjct: 5 PNHLPTVTLSYAQTLDGRLATAAGSSQWISCESSLARAHALRAGHDAVMVGVGTVCRDDP 64
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV------TENDDPVLALA 259
LT RL +P+R+++D + + ++ ++ E L
Sbjct: 65 RLTVRLVP--GENPLRVVVDSTLRTPPSAAVLSDGGAGRTVLAVTERASRERCARAERLG 122
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
R + +L LL L GV S++VEGGA++ SF+ RL D + + + +
Sbjct: 123 ARVLRLPEDGEGRVELAALLAALWESGVRSVMVEGGASLITSFLRERLADRLAVCVAPKL 182
Query: 320 IGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+G GI + + + G+D+ ++ +
Sbjct: 183 LG-RGIEAVGELGIRDLGGALRLEETSVTLCGTDILVDGRIR 223
>gi|116629038|ref|YP_814210.1| cytosine/adenosine deaminase [Lactobacillus gasseri ATCC 33323]
gi|238853616|ref|ZP_04643985.1| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4]
gi|311111167|ref|ZP_07712564.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
gasseri MV-22]
gi|116094620|gb|ABJ59772.1| tRNA-adenosine deaminase [Lactobacillus gasseri ATCC 33323]
gi|238833760|gb|EEQ26028.1| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4]
gi|311066321|gb|EFQ46661.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
gasseri MV-22]
Length = 160
Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQAL 60
++M A ++ G + ++V KDG VIG G HAE+ A+
Sbjct: 8 EKYMQLAFAQAKKAEDQGEV----PIGAIVVDKDGNVIGEGYNRRELDEDATQHAEMIAI 63
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+A + + ++TLEPC
Sbjct: 64 RQACQNLGSWRLVDCSLFITLEPCPMCS 91
>gi|227820996|ref|YP_002824966.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
fredii NGR234]
gi|227339995|gb|ACP24213.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium
fredii NGR234]
Length = 150
Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
R+M AAL +R G + ++V DG V+ HAE++A+ +
Sbjct: 7 RYMDAALDEARKAAARGEV----PIGAVVVLDGEVVAAAGNRTRELRDITAHAEIEAIRQ 62
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A E GA YVTLEPC+
Sbjct: 63 AAAAVGDERLSGADLYVTLEPCTMC 87
>gi|169351621|ref|ZP_02868559.1| hypothetical protein CLOSPI_02401 [Clostridium spiroforme DSM
1552]
gi|169291843|gb|EDS73976.1| hypothetical protein CLOSPI_02401 [Clostridium spiroforme DSM
1552]
Length = 148
Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
+ D +FM A + + L V +IVK+ VI HAE+ A+
Sbjct: 2 NQDIKFMEIAYQEALK--CLEKDEVPVGAVIVKNNEVISCAHNLRETTNLATAHAEILAI 59
Query: 61 EEAGEEAR-----GATAYVTLEPCSHYG 83
EA ++ T YVTLEPC
Sbjct: 60 NEACKKLESWYLDECTLYVTLEPCVMCS 87
>gi|313848259|emb|CBY17260.1| putative cytidine/deoxycytidylate deaminase family protein
[Chlamydophila psittaci RD1]
gi|328914938|gb|AEB55771.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
psittaci 6BC]
Length = 157
Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + D FM+ AL+ +R V C+IVKD +I RG HAE
Sbjct: 1 MNI-EKDIFFMNQALKEARQAYDE--DEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAE 57
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ + A + Y TLEPC
Sbjct: 58 ILCIGAAAQYLENWRLVDTVLYCTLEPCLMC 88
>gi|253682749|ref|ZP_04863545.1| tRNA-specific adenosine deaminase [Clostridium botulinum D str.
1873]
gi|253561071|gb|EES90524.1| tRNA-specific adenosine deaminase [Clostridium botulinum D str.
1873]
Length = 147
Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM AL+ ++ + V +IVK+G VI HAE+ A+++A
Sbjct: 3 EEFMKLALKEAKIAKNMDEV--PVGAIIVKEGKVIASAHNLREKLKDPTAHAEILAIKKA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E YVTLEPC
Sbjct: 61 CEILGDWRLSDCEMYVTLEPCPMC 84
>gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
Length = 521
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D M +AL +R G + ++V DG V+ HAE+
Sbjct: 378 SEDLEHMRSALEQARLAQQAGEV----PIGAVVVWDGEVLAEAHNQVEQQCDATAHAELL 433
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
AL++A + GAT YVTLEPC
Sbjct: 434 ALQQALHKRHSKVLPGATVYVTLEPCPMC 462
>gi|315223581|ref|ZP_07865436.1| tRNA-specific adenosine deaminase [Capnocytophaga ochracea F0287]
gi|314946497|gb|EFS98491.1| tRNA-specific adenosine deaminase [Capnocytophaga ochracea F0287]
Length = 158
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM AL ++ V +I D +I + HAE+QA+
Sbjct: 16 NTDEYFMQKALEEAQLAFEEDEI--PVGAIITIDNRIIAKAHNLTERLNDVTAHAEMQAI 73
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ G T Y+TLEPC+
Sbjct: 74 TMAAHYLGGKYLTGCTMYLTLEPCAMC 100
>gi|296112128|ref|YP_003622510.1| riboflavin-specific
deaminase(diaminohydroxyphosphoribosylaminopyrimidine
deaminase) [Leuconostoc kimchii IMSNU 11154]
gi|295833660|gb|ADG41541.1| riboflavin-specific
deaminase(diaminohydroxyphosphoribosylaminopyrimidine
deaminase) [Leuconostoc kimchii IMSNU 11154]
Length = 248
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 18/266 (6%)
Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
+ G+RRVVV DP+ +G+G+ L G+ VD + + + K+ +
Sbjct: 1 MSTWGLRRVVVGSIDPNPTTNGQGIALLKAAGVEVDVLNTNHSACLNPEFYYYFQSKKPY 60
Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
+ LK+ VS+D + +T + VH RA AI++G T+L D P+LT RL
Sbjct: 61 VQLKLVVSKDGFVSAGHHKRTKLTDARADIDVHQERAAKSAIMIGSQTLLVDQPQLTVRL 120
Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
+ PMR+++D +L +I + +Y
Sbjct: 121 VAIDHQQPMRVVIDRRGRL---QNSHFDFSNRWIIYTENVAFA--------NQNHNVYLM 169
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
L +L L + + S+++EGG + ++FI L +++Y + +G G+P + +
Sbjct: 170 THGLAGVLRHLAQQNIQSVMIEGGPKLMNAFIAENLWQEMLIYETNATLGS-GVPGVICK 228
Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
E G+ + YI
Sbjct: 229 QMPE------SETRVGNALKRRYINN 248
>gi|290969052|ref|ZP_06560587.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Megasphaera genomosp. type_1 str. 28L]
gi|290781008|gb|EFD93601.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Megasphaera genomosp. type_1 str. 28L]
Length = 157
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ D +M AL + P + +IV + +I R T HAE+ A+
Sbjct: 2 TLDELYMGKALAEAETA-FAVEEIP-IGAVIVHENTIIARAYNLRETLPCATAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
E+A G T YVT EPC
Sbjct: 60 EKACRHLNRWRLSGCTLYVTTEPCPMC 86
>gi|321313686|ref|YP_004205973.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
gi|320019960|gb|ADV94946.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5]
Length = 161
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A++ ++ G + ++V + +I R T HAE+
Sbjct: 2 TQDELYMKEAIKEAKKAEEKGEV----PIGAVLVVNDEIIARAHNLRETEQRSIAHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
++EA + GAT YVTLEPC
Sbjct: 58 VMDEACKALGTWRLEGATLYVTLEPCPMC 86
>gi|62185341|ref|YP_220126.1| putative cytidine/deoxycytidylate deaminase family protein
[Chlamydophila abortus S26/3]
gi|62148408|emb|CAH64175.1| putative cytidine/deoxycytidylate deaminase family protein
[Chlamydophila abortus S26/3]
Length = 157
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM+ AL+ +R V C+IVKD +I RG HAE+ +
Sbjct: 4 EKDIFFMNQALKEARQAYDE--DEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + Y TLEPC
Sbjct: 62 GAAAQYLENWRLVDTVLYCTLEPCLMC 88
>gi|306828458|ref|ZP_07461653.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
gi|304429257|gb|EFM32342.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249]
Length = 155
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +I RG A HAE+ A+E A
Sbjct: 9 ESFMREALREAEIALEHDEI--PIGCVIVKDGEIISRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|296819611|ref|XP_002849875.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
gi|238840328|gb|EEQ29990.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480]
Length = 190
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S FM AL+ + G T V C++V G VIG G+ + G HAE
Sbjct: 9 SKHEVFMKMALKMAETALAAGET----PVGCVLVNKGRVIGSGMNDTNKSLNGTRHAEFL 64
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+EEA R YVT+EPC
Sbjct: 65 AIEEALRSHPRSIFRETDLYVTVEPCIMC 93
>gi|91975752|ref|YP_568411.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
BisB5]
gi|91682208|gb|ABE38510.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB5]
Length = 148
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-- 63
FM AL + G + P + C+IV+ G VI +T HAE+ A+ EA
Sbjct: 6 FMDLALAAANIA-GRSGEVP-IGCVIVRGGEVIATAGNRTLTDRDPTAHAELLAIREAAQ 63
Query: 64 ---GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 64 KLGSERLPDCDLYVTLEPCTMC 85
>gi|329117262|ref|ZP_08245979.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus parauberis NCFD 2020]
gi|326907667|gb|EGE54581.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus parauberis NCFD 2020]
Length = 169
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+ +A
Sbjct: 9 ENFMREALREAEKSL--AKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEMMAISQA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NAHEGNWRLLETTMFVTIEPCVMCS 91
>gi|188996445|ref|YP_001930696.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931512|gb|ACD66142.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 149
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
++ +F+ A++ + + N V +IVKDG +I + HAE+ A
Sbjct: 2 NYHKKFIDQAVKEAEKAL---KKNEVPVGAVIVKDGKIISKAHNQRISKNNALYHAEILA 58
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+E++ ++ + A Y TLEPC
Sbjct: 59 IEKSCKKLKTWRLDDAVLYTTLEPCLMC 86
>gi|166154188|ref|YP_001654306.1| cytosine deaminase [Chlamydia trachomatis 434/Bu]
gi|166155063|ref|YP_001653318.1| cytosine deaminase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|255311685|ref|ZP_05354255.1| cytosine deaminase [Chlamydia trachomatis 6276]
gi|255317986|ref|ZP_05359232.1| cytosine deaminase [Chlamydia trachomatis 6276s]
gi|255349249|ref|ZP_05381256.1| cytosine deaminase [Chlamydia trachomatis 70]
gi|255503786|ref|ZP_05382176.1| cytosine deaminase [Chlamydia trachomatis 70s]
gi|255507467|ref|ZP_05383106.1| cytosine deaminase [Chlamydia trachomatis D(s)2923]
gi|301335433|ref|ZP_07223677.1| cytosine deaminase [Chlamydia trachomatis L2tet1]
gi|165930176|emb|CAP03660.1| Cytosine deaminase [Chlamydia trachomatis 434/Bu]
gi|165931051|emb|CAP06614.1| Cytosine deaminase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|289525890|emb|CBJ15372.1| Cytosine deaminase [Chlamydia trachomatis Sweden2]
gi|296435476|gb|ADH17654.1| cytosine deaminase [Chlamydia trachomatis E/150]
gi|296437331|gb|ADH19501.1| cytosine deaminase [Chlamydia trachomatis G/11222]
gi|296439193|gb|ADH21346.1| cytosine deaminase [Chlamydia trachomatis E/11023]
Length = 163
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R P V C+IV +I RG + HAE+ +
Sbjct: 4 EKDLFFMKKALDEARKA-YEQDEVP-VGCIIVHGDKIIARGHNSVEQLKDPTAHAEMICI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A E + Y TLEPC
Sbjct: 62 SAAAEYLENWRLKDTILYCTLEPCLMC 88
>gi|293605714|ref|ZP_06688091.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
43553]
gi|292815893|gb|EFF74997.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
43553]
Length = 169
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAE 56
++ DAR++ AL+ ++ +G V L+V G ++GRG + HAE
Sbjct: 14 TAEDARYIELALQEAQAAYEIGEV----PVGALVVSAQGEILGRGYNRTIIDHDPTAHAE 69
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL A G T YVTLEPC
Sbjct: 70 IVALRNAARRLENYRLPGITVYVTLEPCVMC 100
>gi|194018067|ref|ZP_03056672.1| tRNA-specific adenosine deaminase [Bacillus pumilus ATCC 7061]
gi|194010259|gb|EDW19836.1| tRNA-specific adenosine deaminase [Bacillus pumilus ATCC 7061]
Length = 158
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D +FM A+ + G + +IV D ++ R HAE+ A+
Sbjct: 4 DEQFMQEAISEALKAEQIGEV----PIGAIIVVDDQIVSRAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + A YVTLEPC
Sbjct: 60 DEACKTTGSWRLEDAVLYVTLEPCPMC 86
>gi|157691308|ref|YP_001485770.1| nucleoside deaminase [Bacillus pumilus SAFR-032]
gi|157680066|gb|ABV61210.1| possible nucleoside deaminase [Bacillus pumilus SAFR-032]
Length = 158
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D +FM A+ + G + +IV D ++ R HAE+ A+
Sbjct: 4 DEQFMQEAISEALKAEQIGEV----PIGAIIVVDDQIVSRAHNLRETEQRSIAHAELLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA + A YVTLEPC
Sbjct: 60 DEACKTTESWRLEDAVLYVTLEPCPMC 86
>gi|242794450|ref|XP_002482376.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718964|gb|EED18384.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
Length = 186
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 3 VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
V+ D RFM AL + G T V C++V +G +IG G+ + G HA
Sbjct: 14 VTRQDQERFMKEALLMGEKALAVGET----PVGCVLVLNGKIIGSGMNDTNRSMNGTRHA 69
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
E A+EEA R YVT+EPC
Sbjct: 70 EFLAIEEALQTYPRSIFREVDLYVTVEPCVMCASLLRQYNICR 112
>gi|184200815|ref|YP_001855022.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Kocuria rhizophila DC2201]
gi|183581045|dbj|BAG29516.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Kocuria rhizophila DC2201]
Length = 434
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 95/210 (45%), Gaps = 4/210 (1%)
Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYG 83
NP V ++ G ++ G G PHAEV L++A G+T VTLEPC H G
Sbjct: 32 NPVVGAALLGPTGQLLHVGHHRGAGTPHAEVDVLQQARAARTPLEGSTLVVTLEPCHHTG 91
Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
R+ PC + G+ RVV + DP G G S + ++ E + +L
Sbjct: 92 RTGPCTAAVEAAGVPRVVYALADPTAEARGGGAALRSHGVHVRAGLLADEARELNERWLR 151
Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
+ + R ++LKIA S D + A S ITG ++ + H LR + DAILVG GT+ D
Sbjct: 152 AREQARPFVSLKIAQSLDGRVAAADGTSQWITGLPARAEGHALRTRVDAILVGGGTLRGD 211
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
DP LT R + + +
Sbjct: 212 DPALTARDAEGAPCARQPLRAVMSTRPVPP 241
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-- 326
+ D ++ LT L G +LVEGG VA +F+ + LVD + L+++ +++G+G
Sbjct: 334 HLSTHDPREALTRLRDLGAAHVLVEGGPTVAAAFLAADLVDELWLHQAPLLLGDGAASVG 393
Query: 327 -SPLEEGYLEKNFM-------CVRRDYFGSDVCLEYIG 356
+ ++ G D+
Sbjct: 394 ALGIGTLAAASSWRGDPVGVQDGPVAAVGEDLRWHLRP 431
>gi|270291185|ref|ZP_06197408.1| cytidine deaminase [Pediococcus acidilactici 7_4]
gi|270280581|gb|EFA26416.1| cytidine deaminase [Pediococcus acidilactici 7_4]
Length = 163
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 1 MPVSSFDA----RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M +S +M AL+ +++ + + ++V DG +IGRG +
Sbjct: 1 MSMSKLSEAEVQFYMGEALKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDAT 58
Query: 53 PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYG 83
HAEV A+ EA R +VT+EPC
Sbjct: 59 THAEVLAITEACAYLRSWRLWDCQLFVTIEPCLMCS 94
>gi|88803350|ref|ZP_01118876.1| guanine deaminase [Polaribacter irgensii 23-P]
gi|88780916|gb|EAR12095.1| guanine deaminase [Polaribacter irgensii 23-P]
Length = 157
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
FMSAA++ + + + C+IVKDG +IG G HAEV A+
Sbjct: 2 KQHEEFMSAAVKAALKGMNN-NEGGPFGCIIVKDGAIIGSGNNKVTSTNDPTAHAEVTAI 60
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+A + G Y + EPC
Sbjct: 61 RDACKNIGSFQLDGCIIYTSCEPCPMC 87
>gi|227877638|ref|ZP_03995691.1| nucleoside deaminase [Lactobacillus crispatus JV-V01]
gi|227862786|gb|EEJ70252.1| nucleoside deaminase [Lactobacillus crispatus JV-V01]
Length = 185
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSFDAR-FMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPH 54
+SS D R +M A+ ++ G + ++V DG V+G G H
Sbjct: 21 LSSEDKRKYMQLAIDQAKEAEKQGEV----PIGAVVVDPDGRVVGTGYNRRELDEDATQH 76
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A++EA + +VTLEPC
Sbjct: 77 AEMIAIKEACSKLGMWRLIDCSLFVTLEPCPMC 109
>gi|237756081|ref|ZP_04584658.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691753|gb|EEP60784.1| tRNA-specific adenosine deaminase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 149
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
++ +F+ A++ + + N V +IVKDG +I + HAE+ A
Sbjct: 2 NYHKKFIDQAVKEAEKAL---KKNEVPVGAIIVKDGKIISKAHNQRISKNNALYHAEILA 58
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+E+A ++ + A Y TLEPC
Sbjct: 59 IEKACKKLKTWRLDDAVLYTTLEPCLMC 86
>gi|262384051|ref|ZP_06077187.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|301310955|ref|ZP_07216884.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
sp. 20_3]
gi|262294949|gb|EEY82881.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|300831018|gb|EFK61659.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
sp. 20_3]
Length = 146
Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R G V +I+ + +I R HAE+ A+
Sbjct: 6 DEYFMKQALVEARAAASEGEV----PVGAVIICNNQIIARAHNQTECLNDVTAHAEMLAI 61
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A + + YVT+EPC
Sbjct: 62 TAAAGVLGAKYLTNCSLYVTVEPCIMC 88
>gi|302546634|ref|ZP_07298976.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
domain-containing protein [Streptomyces hygroscopicus
ATCC 53653]
gi|302464252|gb|EFL27345.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD
domain-containing protein [Streptomyces himastatinicus
ATCC 53653]
Length = 272
Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 12/204 (5%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
S D I + +TG + +H LRA +DA++VG GT LADDP+LT R
Sbjct: 68 GQSLDGFIATRTGDADYVTGEEDRCHLHRLRALTDAVVVGAGTALADDPQLTVRACS--G 125
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
P+R+ILDPH ++ ++ + +V + + +
Sbjct: 126 PHPVRVILDPHGRVPPHRRVFTDGSAPTLWVVGAETGDGRTAPDGVDVLTLPDRAAFAPQ 185
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLE 330
+L+ L RG+ +L+EGG F++ + + + + +++G GIP +P+
Sbjct: 186 RLVEALAARGLGRVLIEGGGVTVSRFLHDGALHRLYVTVAPVLLG-DGIPGLRFDGTPVM 244
Query: 331 EGYLEKNFMCVRRDYFGSDVCLEY 354
L RR G D E
Sbjct: 245 RDALRPR---TRRARLGEDTLFEL 265
>gi|219851937|ref|YP_002466369.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaerula
palustris E1-9c]
gi|219546196|gb|ACL16646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Methanosphaerula palustris E1-9c]
Length = 231
Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 14/224 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + +A+S D + V I+G I +V ++A SDAI+VGIGTVLADDP L
Sbjct: 1 MRPYVFVNVAMSADGKLSTRERRQVKISGSIDFRRVDQIKAGSDAIMVGIGTVLADDPSL 60
Query: 208 TCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLAL 258
T + ++ +P+R+++D + +++ I+ ++ V E D+ L
Sbjct: 61 TVKDPELKAGRAARGEDENPIRVVVDSRGRTPIEAAILNKGSGQRIVAVAGEADEKNREL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
K ++ + DL LL L RGV L+VEGG + S I LVD I + +
Sbjct: 121 LREKADVITTGTESVDLPALLDALHARGVRRLMVEGGGTLIWSLIKEDLVDEIQTFIGNM 180
Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357
VIG P+ + + L + +
Sbjct: 181 VIGGKDAPTLADGEGFLAAQDFVGLDLADVLRMEEGILLTWKVR 224
>gi|325130078|gb|EGC52865.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
OX99.30304]
gi|325138115|gb|EGC60688.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
ES14902]
gi|325142208|gb|EGC64629.1| tRNA-specific adenosine deaminase [Neisseria meningitidis
961-5945]
Length = 163
Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM AL ++ +G V +IV DG +I HAE+ AL +
Sbjct: 18 HFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 73
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 74 AGSEMQNYRLDGCDIYITLEPCAMC 98
>gi|312129766|ref|YP_003997106.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella byssophila
DSM 17132]
gi|311906312|gb|ADQ16753.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella byssophila
DSM 17132]
Length = 152
Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 34/156 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M FD FM A++ ++ + + V ++V D +I G
Sbjct: 1 MDKPKFDDIFMDLAIQLAKRSHCVRA---QVGAVLVNDTRIISIGYNGPPAGTHNCDDEF 57
Query: 51 ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
GCP HAE A+ A G G+T YVTL PC R +
Sbjct: 58 GEQGCPRDSKGSCSLALHAEQNAILYATKNGANVEGSTLYVTLSPCIACARVIFSMKIKK 117
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ + S G+ +L + GI V +
Sbjct: 118 VFYLN----SYAEYKGLSSDEGVDFLRRFGIEVVKY 149
>gi|325207969|gb|ADZ03421.1| putative tRNA-specific adenosine deaminase [Neisseria
meningitidis NZ-05/33]
Length = 148
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
FM AL ++ +G V +IV DG +I HAE+ AL +
Sbjct: 3 HFMGLALEQAKLSALMGEI----PVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQ 58
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 59 AGSEMQNYRLDGCDIYITLEPCAMC 83
>gi|304436805|ref|ZP_07396772.1| tRNA-specific adenosine deaminase [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304370198|gb|EFM23856.1| tRNA-specific adenosine deaminase [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 153
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQA 59
D M AL +R P + +I+ D G VI G T + HAE+ A
Sbjct: 2 PDDLHGMRLALEEARRA-YQCGEVP-IGAVILDDVGSVISSGYNLRETEHDATAHAELIA 59
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFII 93
+ A + G T YVT+EPC + ++
Sbjct: 60 IRRACKALGRWRLTGMTLYVTIEPCPMCAGAIVMSRISR 98
>gi|220906017|ref|YP_002481328.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
gi|219862628|gb|ACL42967.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
Length = 161
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D R + A+ R T C+I KDG +I G H E+ A+ +
Sbjct: 6 DERLIRRAIELGRRAALDLCTGGPFGCVIAKDGAIIAEGYNRVVAENDPTWHGEMAAIRQ 65
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSP 86
A + + G Y + EPC +
Sbjct: 66 AAKQLQTFDLSGCVLYTSAEPCPMCAAAC 94
>gi|169335874|ref|ZP_02863067.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis
DSM 17244]
gi|169258612|gb|EDS72578.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis
DSM 17244]
Length = 145
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
+M A++ + + V LIVKD +I + HAE+ A+ EA
Sbjct: 4 YMLLAVQEALKS----GKDVPVGALIVKDDKIISKAHNEVIKNNDPTAHAEILAIREACS 59
Query: 66 -----EARGATAYVTLEPCSHY 82
G + YVTLEPC
Sbjct: 60 ILDSYNLSGCSIYVTLEPCPMC 81
>gi|317051257|ref|YP_004112373.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum
indicum S5]
gi|316946341|gb|ADU65817.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum
indicum S5]
Length = 157
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
S +M A+ +R ++ + +IV++G V+GRG + HAE+ A+
Sbjct: 2 SDHRVYMEQAIAMARQNI-DSGDGGPFGAVIVREGQVVGRGRNGVTSSLDPTAHAEIVAI 60
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+A + Y + EPC
Sbjct: 61 RDACANLKTFHLEDCDIYTSCEPCPMC 87
>gi|77166061|ref|YP_344586.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosococcus oceani ATCC 19707]
gi|254436457|ref|ZP_05049961.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Nitrosococcus oceani AFC27]
gi|76884375|gb|ABA59056.1| tRNA-adenosine deaminase [Nitrosococcus oceani ATCC 19707]
gi|207087927|gb|EDZ65202.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Nitrosococcus oceani AFC27]
Length = 155
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
D +M AL +R+ G V ++V++G ++G+G ++ HAE+Q
Sbjct: 8 EKDIPWMHHALALARYAEEAGEV----PVGAVVVQEGEMVGKGWNCPINSHDPTAHAEIQ 63
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G T YVTLEPC+
Sbjct: 64 AIRAASQKLGNYRLVGTTLYVTLEPCAMC 92
>gi|193884346|dbj|BAG54993.1| riboflavin biosynthesis protein ribG [Amphibacillus xylanus]
Length = 198
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 11/205 (5%)
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
K A++ D + + + + V R ILVG T+L D+P L
Sbjct: 1 KQAITLDGKLSLDSKRTAITGK-DTYQYVRKERNHYQGILVGSQTILTDNPFLLGTDQ-- 57
Query: 215 QEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
P+RIILD + + + +PV I TE + + +
Sbjct: 58 -TLHPIRIILDRRGRLFNKLDLNVFINQASPVWIFTERKVNIKLPKHVEAIVL----KSA 112
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+K ++ L R + SL VEGGA V SF+NS D +I Y + VIG G+P+
Sbjct: 113 TVKSIIKELTRRNIHSLYVEGGAKVHDSFLNSGYWDQMITYIAPKVIGGNGVPAMSSTRE 172
Query: 334 LEK--NFMCVRRDYFGSDVCLEYIG 356
+ + V + D+ +
Sbjct: 173 VNQVIELTNVTVESIHDDLRISGRR 197
>gi|311070665|ref|YP_003975588.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
gi|310871182|gb|ADP34657.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942]
Length = 161
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M A++ ++ G + ++V + ++ R T HAE+ A+
Sbjct: 4 DEFYMLEAIKEAKKAEEIGEV----PIGAVLVMNDDIVARAHNLRETEQRSIAHAEMLAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+EA GA+ YVTLEPC
Sbjct: 60 DEACRTLGTWRLEGASLYVTLEPCPMC 86
>gi|258540446|ref|YP_003174945.1| CMP/dCMP deaminase zinc-binding [Lactobacillus rhamnosus Lc 705]
gi|257152122|emb|CAR91094.1| CMP/dCMP deaminase, zinc-binding [Lactobacillus rhamnosus Lc 705]
Length = 168
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M S ++M AAL ++ G + ++V D +IGRG T H
Sbjct: 1 MTDSEI-NQYMIAALVEAKKAAAIGEV----PIGAVVVHDQQIIGRGYNLRETTQDATQH 55
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A++ A + +VTLEPC
Sbjct: 56 AEILAIQAACRQLGTWRLEDCSLFVTLEPCPMC 88
>gi|33592773|ref|NP_880417.1| putative zinc-binding hydrolase [Bordetella pertussis Tohama I]
gi|33572421|emb|CAE41987.1| putative zinc-binding hydrolase [Bordetella pertussis Tohama I]
gi|332382186|gb|AEE67033.1| putative zinc-binding hydrolase [Bordetella pertussis CS]
Length = 149
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA 63
M+ AL ++ +G V ++V G V+G G HAE+ AL A
Sbjct: 1 MALALEQAQEAARLGEV----PVGAVVVDAQGEVLGTGYNRTIIDRDPTAHAEIVALRAA 56
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
G + YVTLEPC
Sbjct: 57 ARRLDNYRLPGVSLYVTLEPCVMC 80
>gi|307704429|ref|ZP_07641340.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
gi|307707916|ref|ZP_07644391.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
mitis NCTC 12261]
gi|307615981|gb|EFN95179.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
mitis NCTC 12261]
gi|307622002|gb|EFO01028.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597]
Length = 155
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720]
Length = 590
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
+FM AL +R G T T +V ++V DG V+ G + G HAE ALE+ E+
Sbjct: 442 RKFMELALENARK-CGETQTQFNVGAVLVLDGQVLSTGHSRELPGNTHAEQCALEKYFEK 500
Query: 67 ------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
G Y T+EPCS G P + I V V+ + G
Sbjct: 501 TGQRNVPEGTEIYTTMEPCSLRLSGNLPCVDRIIATNIKTCYVGVVEPDTFVENNTGQAK 560
Query: 119 LSQKGIIVDRMMESEGK 135
L + G+ + E +
Sbjct: 561 LREAGVEYIHIPGYEDE 577
>gi|223937372|ref|ZP_03629277.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
gi|223893923|gb|EEF60379.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514]
Length = 155
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 18/90 (20%)
Query: 6 FDARFMSAA----LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
+ ++M A +R R +G ++VK+G ++GRG HAEV
Sbjct: 1 MNKKYMQEAVRISIRMMRRGIGG-----PFGAVVVKNGKIVGRGCNQVTSTNDPTAHAEV 55
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ +A + + Y + EPC
Sbjct: 56 VAIRDACKRLKTFQLDDCELYTSCEPCPMC 85
>gi|209886356|ref|YP_002290213.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
gi|209874552|gb|ACI94348.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5]
Length = 181
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63
FM ALR ++ G + C++V++G VI R +T HAE+ AL EA
Sbjct: 39 FMDLALRQAQNAEANGEV----PIGCVVVQNGTVIAAAGNRTITDRDPTAHAEMLALREA 94
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 95 ASKLGRERLADCDLYVTLEPCTMC 118
>gi|150004434|ref|YP_001299178.1| putative cytosine/adenosine deaminase [Bacteroides vulgatus ATCC
8482]
gi|212695454|ref|ZP_03303582.1| hypothetical protein BACDOR_05008 [Bacteroides dorei DSM 17855]
gi|237708840|ref|ZP_04539321.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237724273|ref|ZP_04554754.1| cytosine deaminase [Bacteroides sp. D4]
gi|265755901|ref|ZP_06090368.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294775508|ref|ZP_06741020.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides vulgatus PC510]
gi|149932858|gb|ABR39556.1| putative cytosine/adenosine deaminase [Bacteroides vulgatus ATCC
8482]
gi|212661991|gb|EEB22565.1| hypothetical protein BACDOR_05008 [Bacteroides dorei DSM 17855]
gi|229437461|gb|EEO47538.1| cytosine deaminase [Bacteroides dorei 5_1_36/D4]
gi|229457266|gb|EEO62987.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263233979|gb|EEZ19580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294450653|gb|EFG19141.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides vulgatus PC510]
Length = 144
Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M AL + G V ++V +IGRG T HAE+Q
Sbjct: 2 ADDTYYMKQALMEAVKAAEQGEV----PVGAVVVCRDRIIGRGHNLTETLNDVTAHAEMQ 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A G+ T YVT+EPC CA I ++V +DP
Sbjct: 58 AVTAAANTLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDPKRGYQK 111
Query: 114 RGLQWLSQKGIIV 126
L K I+V
Sbjct: 112 YAPDALHPKTIVV 124
>gi|302873177|ref|YP_003841810.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
gi|307688659|ref|ZP_07631105.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
cellulovorans 743B]
gi|302576034|gb|ADL50046.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
Length = 169
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 21/101 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGL-TSTNPSVACLIVKD-GIVIGRG----VTAYGGCPH 54
M +S +D +++ A + T + +IV D G ++ +G T H
Sbjct: 1 MRLSDYD--YLALAFEEANQAFEEGTYP---IGAVIVDDDGNIVSKGRNRVFTESDCTAH 55
Query: 55 AEVQALEEAGEEA----------RGATAYVTLEPCSHYGRS 85
AEV A+ +AG + T Y T EPC +
Sbjct: 56 AEVDAIRKAGHKLLDIPNKRFVKNNLTLYTTCEPCPMCTCT 96
>gi|24378807|ref|NP_720762.1| putative deaminase [Streptococcus mutans UA159]
gi|24376681|gb|AAN58068.1|AE014879_5 putative deaminase [Streptococcus mutans UA159]
Length = 156
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM AL+ ++ + + C+IVKDG +IG G A HAE+ A+ +A
Sbjct: 10 EFFMGEALKEAQLSLQK--EEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTQESWRLLDCTLFVTIEPCIMCS 92
>gi|307710059|ref|ZP_07646503.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
gi|307619039|gb|EFN98171.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564]
Length = 155
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLREESWRLLDCTLFVTIEPCVMCS 91
>gi|220910074|ref|YP_002485385.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
gi|219866685|gb|ACL47024.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
Length = 174
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
+M A+ + G P V ++V G ++G G HAE+ AL
Sbjct: 9 QHCEWMEQAIALAEQA-GAAGEVP-VGAIVVSPQGELLGTGENRRERDGDPTAHAEILAL 66
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
AG++ + T YV LEPC
Sbjct: 67 RAAGQKLQTWYLKNCTLYVNLEPCPMC 93
>gi|116050443|ref|YP_790738.1| putative deaminase [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585664|gb|ABJ11679.1| putative deaminase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 151
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D FM A+ +R G ++V+DG V+ RGV + HAE+QA
Sbjct: 3 DETFMREAIALARANVEAGGR-----PFGAVLVRDGRVLARGVNQIHETHDPSAHAELQA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A + G Y + PC
Sbjct: 58 IRQASQALGSPHLDGCVIYASGHPCPMC 85
>gi|333029805|ref|ZP_08457866.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
gi|332740402|gb|EGJ70884.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
Length = 145
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D+ FM AL+ + + G V ++V G VI R HAE+QA
Sbjct: 4 DDSYFMKMALQEAESAMKMGEI----PVGAVVVSHGQVIARAHNMTERLTDVTAHAEMQA 59
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ T YVTLEPC
Sbjct: 60 ITMAADLLGGKYLSDCTLYVTLEPCVMC 87
>gi|331012489|gb|EGH92545.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 123
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGY 333
KL+ L RGV +LVE G +A +F LVD ++ + +G P PL +
Sbjct: 35 KLMVELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMS 94
Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
V+ G+D + +
Sbjct: 95 EALELNIVQMRAVGNDWRVIALP 117
>gi|289629167|ref|ZP_06462121.1| riboflavin synthase subunit alpha [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
Length = 118
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGY 333
KL+ L RGV +LVE G +A +F LVD ++ + +G P PL +
Sbjct: 30 KLMGELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMS 89
Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
V+ G+D + +
Sbjct: 90 EALELNIVQMRAVGNDWRVIALP 112
>gi|237784829|ref|YP_002905534.1| putative cytosine/adenosine deaminase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237757741|gb|ACR16991.1| putative cytosine/adenosine deaminase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 163
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
R+M AL ++ T + V ++V G V+G G HAEV AL
Sbjct: 16 ERWMQMALDVAKR----TPPGDVPVGAVVVDASGHVVGEGCNERESTGDPTAHAEVIALR 71
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A G T VTLEPC
Sbjct: 72 AAAREVGDGWRLENHTLVVTLEPCVMC 98
>gi|290581189|ref|YP_003485581.1| putative deaminase [Streptococcus mutans NN2025]
gi|254998088|dbj|BAH88689.1| putative deaminase [Streptococcus mutans NN2025]
Length = 156
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM AL+ ++ + + C+IVKDG +IG G A HAE+ A+ +A
Sbjct: 10 EFFMGEALKEAQLSLQK--EEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTQESWRLLDCTLFVTIEPCIMCS 92
>gi|15893419|ref|NP_346768.1| cytosine deaminase [Clostridium acetobutylicum ATCC 824]
gi|15022950|gb|AAK78108.1|AE007525_2 Cytosine deaminase [Clostridium acetobutylicum ATCC 824]
gi|325507531|gb|ADZ19167.1| Cytosine deaminase [Clostridium acetobutylicum EA 2018]
Length = 147
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
F++ A++ ++ G V +IVKD +I HAE+ A+E
Sbjct: 4 EFLNEAIKEAKLAKKEGEV----PVGAVIVKDNKIIATSHNLKESLKNPSAHAEIIAIER 59
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G YVTLEPC
Sbjct: 60 AAKYLNNWRLNGCEMYVTLEPCPMC 84
>gi|53711997|ref|YP_097989.1| putative cytosine/adenosine deaminase [Bacteroides fragilis YCH46]
gi|60680198|ref|YP_210342.1| cytosine deaminase [Bacteroides fragilis NCTC 9343]
gi|253563968|ref|ZP_04841425.1| cytosine deaminase [Bacteroides sp. 3_2_5]
gi|265765335|ref|ZP_06093610.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
gi|52214862|dbj|BAD47455.1| putative cytosine/adenosine deaminase [Bacteroides fragilis YCH46]
gi|60491632|emb|CAH06384.1| possible cytosine deaminase [Bacteroides fragilis NCTC 9343]
gi|251947744|gb|EES88026.1| cytosine deaminase [Bacteroides sp. 3_2_5]
gi|263254719|gb|EEZ26153.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
gi|301161723|emb|CBW21263.1| possible cytosine deaminase [Bacteroides fragilis 638R]
Length = 145
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
D+ FM AL + G P V ++V +I R T HAE+QA+
Sbjct: 3 DDSYFMKQALIEAVKA-GERGEVP-VGAVVVCKERIIARAHNLTETLNDVTAHAEMQAIT 60
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G+ T YVT+EPC CA I ++V +D
Sbjct: 61 AAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDDKRGYQRYAP 114
Query: 117 QWLSQKGIIV 126
Q L K ++V
Sbjct: 115 QALHPKTVVV 124
>gi|229552943|ref|ZP_04441668.1| nucleoside deaminase [Lactobacillus rhamnosus LMS2-1]
gi|229313687|gb|EEN79660.1| nucleoside deaminase [Lactobacillus rhamnosus LMS2-1]
Length = 170
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53
M ++ + ++M AAL ++ G + ++V D +IGRG T
Sbjct: 1 MAMTDSEINQYMIAALVEAKKAAAIGEV----PIGAVVVHDQQIIGRGYNLRETTQDATQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++ A + +VTLEPC
Sbjct: 57 HAEILAIQAACRQLGTWRLEDCSLFVTLEPCPMC 90
>gi|319779703|ref|YP_004130616.1| tRNA-specific adenosine-34 deaminase [Taylorella equigenitalis
MCE9]
gi|317109727|gb|ADU92473.1| tRNA-specific adenosine-34 deaminase [Taylorella equigenitalis
MCE9]
Length = 162
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Query: 1 MPVSSFD-ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGI-VIGRGVTAYGGC---- 52
MP++ D +FM AL+ + G V ++V ++G+G G
Sbjct: 1 MPLNIADNKKFMQLALQNAEKAYKSGEV----PVGAVLVGPNQDILGQGYNQVIGTSDST 56
Query: 53 PHAEVQALEEAG------EEARGATAYVTLEPCSHY 82
HAE+ AL EA G T +VTLEPC
Sbjct: 57 AHAEIVALREANLSIQNYRLPSGCTMFVTLEPCIMC 92
>gi|300362312|ref|ZP_07058488.1| cytidine/deoxycytidylate deaminase [Lactobacillus gasseri JV-V03]
gi|300353303|gb|EFJ69175.1| cytidine/deoxycytidylate deaminase [Lactobacillus gasseri JV-V03]
Length = 160
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQAL 60
+M A ++ G + ++V KDG VIG G HAE+ A+
Sbjct: 8 EEYMQLAFAQAKKAEDQGEV----PIGAIVVDKDGNVIGEGYNRRELDEDATQHAEMIAI 63
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
EA + + ++TLEPC
Sbjct: 64 REACKNLGSWRLVDCSLFITLEPCPMCS 91
>gi|149176635|ref|ZP_01855247.1| cytosine deaminase [Planctomyces maris DSM 8797]
gi|148844514|gb|EDL58865.1| cytosine deaminase [Planctomyces maris DSM 8797]
Length = 171
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
R+M A + P V +IV +I HAE+ A+
Sbjct: 20 LHTRWMRYAYDEA-RAAFEEDEVP-VGAVIVYQDRIIAAAHNQREMLSDPTAHAEMIAIT 77
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A E YVTLEPC
Sbjct: 78 QAAESLGSWRLSDCVLYVTLEPCPMC 103
>gi|322515941|ref|ZP_08068882.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis
ATCC 49124]
gi|322125615|gb|EFX96945.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis
ATCC 49124]
Length = 172
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EFFMSEALKEAQKSLDKAEI--PIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|262281785|ref|ZP_06059554.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
gi|262262239|gb|EEY80936.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA]
Length = 162
Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHA 55
M S + FM AL+ +R + + C+IV+DG +IGRG A HA
Sbjct: 8 MNYSKEEKEYFMLEALKEARIALENDEI--PIGCVIVRDGQIIGRGHNAREELQRAVMHA 65
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYG 83
E+ A+EEA + T +VT+EPC
Sbjct: 66 EIMAIEEANQHENSWRLLDTTLFVTIEPCVMCS 98
>gi|256820484|ref|YP_003141763.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM
7271]
gi|256582067|gb|ACU93202.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM
7271]
Length = 144
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM AL ++ V +I D +I + HAE+QA+
Sbjct: 2 NTDEYFMQKALEEAQLAFEEDEI--PVGAIITIDNRIIAKAHNLTERLNDVTAHAEMQAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ G T Y+TLEPC+
Sbjct: 60 TMAAHYLGGKYLIGCTMYLTLEPCAMC 86
>gi|28493718|ref|NP_787879.1| hypothetical protein TWT751 [Tropheryma whipplei str. Twist]
gi|28572904|ref|NP_789684.1| hypothetical protein TW763 [Tropheryma whipplei TW08/27]
gi|28411037|emb|CAD67422.1| conserved hypothetical protein (putative deaminase) [Tropheryma
whipplei TW08/27]
gi|28476760|gb|AAO44848.1| unknown [Tropheryma whipplei str. Twist]
Length = 170
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
D + M AL + G P V +I +G I G HAE+ A+
Sbjct: 24 DEKIMRKALCLA-HAAGEKGEIP-VGAVIADVNGKTIAEGFNKREESKDPTDHAEIIAIR 81
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + G T +VT+EPC+
Sbjct: 82 KASQMLKDWRLSGLTLFVTMEPCTMC 107
>gi|307825441|ref|ZP_07655660.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum
SV96]
gi|307733616|gb|EFO04474.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum
SV96]
Length = 142
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M A+R ++ G V ++V+D I G T++ HAEV A+ AG
Sbjct: 1 MRHAIRLAQRAEQQGEV----PVGAIVVRDNRCIAEGWNIPITSHDPTAHAEVVAMRGAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
AT YVTLEPC
Sbjct: 57 VHVQNYRLNDATLYVTLEPCVMC 79
>gi|241895205|ref|ZP_04782501.1| tRNA-adenosine deaminase [Weissella paramesenteroides ATCC 33313]
gi|241871511|gb|EER75262.1| tRNA-adenosine deaminase [Weissella paramesenteroides ATCC 33313]
Length = 175
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
FM AL +R G + ++V+DG V+ R G HAE QA+ E
Sbjct: 12 YFMGLALAEARKAAMIGEV----PIGAVVVQDGQVVSRAFNLREHMQDGSQHAEYQAIIE 67
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A A +VTLEPC
Sbjct: 68 ANRQLHSWRLPDAQLFVTLEPCIMC 92
>gi|87198248|ref|YP_495505.1| tRNA-adenosine deaminase [Novosphingobium aromaticivorans DSM
12444]
gi|87133929|gb|ABD24671.1| tRNA-adenosine deaminase [Novosphingobium aromaticivorans DSM
12444]
Length = 151
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M AL + G + ++VKDG V+ T HAE+ A+ A
Sbjct: 10 MRLALDEALRAADEGEV----PIGAVVVKDGKVVAAAHNRPRTLRDPTAHAEMLAIRAAA 65
Query: 65 -----EEARGATAYVTLEPCSHY 82
E G +V+LEPC+
Sbjct: 66 AQLGQERLEGCDLWVSLEPCAMC 88
>gi|238926792|ref|ZP_04658552.1| deaminase [Selenomonas flueggei ATCC 43531]
gi|238885324|gb|EEQ48962.1| deaminase [Selenomonas flueggei ATCC 43531]
Length = 152
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQA 59
D M AL ++ L P + +I+ D G VI G T + HAE+ A
Sbjct: 2 PDDLHGMRLALEEAKRA-YLCGEVP-IGAVILDDAGSVISSGYNLRETEHDATAHAELIA 59
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFII 93
+ A + G T YVT+EPC + ++
Sbjct: 60 IRRACKALGRWRLTGLTLYVTIEPCPMCAGAIVMSRISR 98
>gi|157150388|ref|YP_001449474.1| putative cytidine/deoxycytidylate deaminase [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075182|gb|ABV09865.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
gordonii str. Challis substr. CH1]
Length = 177
Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHA 55
M S + FM AL+ +R + + C+IV+DG +IGRG A HA
Sbjct: 23 MNYSKEEKEYFMLEALKEARIALENDEI--PIGCVIVRDGQIIGRGHNAREELQRAVMHA 80
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHYG 83
E+ A+EEA G T +VT+EPC
Sbjct: 81 EIMAIEEANHHENGWRLLDTTLFVTIEPCVMCS 113
>gi|291302010|ref|YP_003513288.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290571230|gb|ADD44195.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 215
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 9/214 (4%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+R + L A+S D + A + ++ N+V LR DAILVG TV D+
Sbjct: 1 MTVRRPWVLLSAAMSLDGYLDDATATRLVLSNDEDLNRVRQLRGHYDAILVGAETVRRDN 60
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P L P ++ L L S+ T AP+++ L ++
Sbjct: 61 PSLRAVD----GPQPRKVTLTATGDLDPASRFFTTG-AAPLVLCPPPVAEELRRRLGERA 115
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
L ++L L GV L+VEGG +V F+ L D + L + +G+
Sbjct: 116 EVQSLPAGAGLAEILQTLWNLGVRRLMVEGGGSVHTQFLTQGLADELRLAVAPFFVGDAA 175
Query: 325 IPSPLEEGYLE----KNFMCVRRDYFGSDVCLEY 354
P E G ++ G L Y
Sbjct: 176 APRFTEPGKFPHDGQHRMRLYEVEHLGDMAVLHY 209
>gi|312862370|ref|ZP_07722613.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus vestibularis F0396]
gi|311102013|gb|EFQ60213.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus vestibularis F0396]
Length = 172
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EFFMSEALKEAQKSLDKAEI--PIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|304383618|ref|ZP_07366077.1| guanine deaminase [Prevotella marshii DSM 16973]
gi|304335142|gb|EFM01413.1| guanine deaminase [Prevotella marshii DSM 16973]
Length = 155
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M A+ S V +I KDG +I G + + HAEV A+ +A
Sbjct: 4 EELMRKAIALSEESVKNGGG--PFGAVIAKDGEIIAEGANSVTKDHDPTAHAEVNAIRKA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 SRKLGTFDLSGCEIYTSCEPCPMC 85
>gi|241955527|ref|XP_002420484.1| DRAP deaminase, putative; pseudouridine synthase, putative [Candida
dubliniensis CD36]
gi|223643826|emb|CAX41563.1| DRAP deaminase, putative [Candida dubliniensis CD36]
Length = 589
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-----E 61
+FM A++ + G T T +V C++V +G VI G + G HAE AL +
Sbjct: 438 RKFMEMAIKEAEK-CGKTQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSK 496
Query: 62 EAGEE--ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
GE G + ++EPCS G P + + I+ V V +PD+ +
Sbjct: 497 NGGEREVPSGTEIFTSMEPCSLRLSGNLPCVDRILQTKSIKTCFVGVLEPDIFVKNNSSY 556
Query: 117 QWLSQKGIIVDRMMESEGKI 136
+ L G+ + E
Sbjct: 557 KKLLDHGVEYIHIPGYEETC 576
>gi|189485590|ref|YP_001956531.1| tRNA-specific adenosine deaminase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287549|dbj|BAG14070.1| tRNA-specific adenosine deaminase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 149
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M AL+ + + +IVKD +I RG HAE+ AL +A ++
Sbjct: 1 MFQALKEASKARESREV--PIGAVIVKDNKIIARGFNKCIALSDPTAHAEIVALRKAAKK 58
Query: 67 ARG-----ATAYVTLEPCSHY 82
+ AY T+EPC
Sbjct: 59 LKNYRLNDCYAYATIEPCLMC 79
>gi|255322011|ref|ZP_05363161.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
gi|255301115|gb|EET80382.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277]
Length = 371
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 49/151 (32%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63
D +MS A++ + LT NP+V C+I+ G ++ G HAE A+ A
Sbjct: 4 DEFYMSLAIKKAWEFQILTYPNPAVGCVILDSSGRLLSVAAHKKAGFLHAEPSAILLALC 63
Query: 64 ----------------------------------------------GEEARGATAYVTLE 77
G+ +GA AYVTLE
Sbjct: 64 QKCEAFLRDFLRDYHAALGVKFENAAELENADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
PC+H G++PPCA+ + VV+ D +
Sbjct: 124 PCAHRGKTPPCAELLSRLKFAEVVIARGDEN 154
>gi|261380282|ref|ZP_05984855.1| tRNA-specific adenosine deaminase [Neisseria subflava NJ9703]
gi|284796794|gb|EFC52141.1| tRNA-specific adenosine deaminase [Neisseria subflava NJ9703]
Length = 240
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 4 SSFD-ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
S D FM A+ ++ +G V +IV G I G HAE
Sbjct: 88 SQSDMETFMRLAIEQAKQSAVLGEV----PVGAVIVYQGEAIAATHNTCIGDHNVSHHAE 143
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL AG+ Y+TLEPCS
Sbjct: 144 INALAAAGKTLQNYRLEDCDVYITLEPCSMC 174
>gi|182416349|ref|YP_001821415.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
gi|177843563|gb|ACB77815.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
Length = 183
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M A++ + + C+IV+ G ++ RG HAEV A+ EA
Sbjct: 31 ETYMREAIQLADDGM-RADRGGPFGCVIVRRGEIVARGQNRVTSTNDPTAHAEVTAIREA 89
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ Y + EPC
Sbjct: 90 AQRLGTFQLGDCELYTSCEPCPMC 113
>gi|255527107|ref|ZP_05393995.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
gi|296187896|ref|ZP_06856289.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium carboxidivorans P7]
gi|255509209|gb|EET85561.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
gi|296047517|gb|EFG86958.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium carboxidivorans P7]
Length = 145
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
FM A++ + + G V +IVKD I+I R T HAE+ A++
Sbjct: 2 KNFMREAIKEAEKSLVLGEV----PVGVVIVKDNIIIARAHNLRETLQDTLAHAEILAIK 57
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
EA + G + YVTLEPC
Sbjct: 58 EASQYTNNWRLSGCSMYVTLEPCPMC 83
>gi|299139283|ref|ZP_07032459.1| Guanine deaminase [Acidobacterium sp. MP5ACTX8]
gi|298598963|gb|EFI55125.1| Guanine deaminase [Acidobacterium sp. MP5ACTX8]
Length = 157
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
FM A++ + +V G ++VKDG VI G HAEV A+
Sbjct: 6 EFMQQAIQLATDNVVSGRGGP---FGAVVVKDGKVIATGANQVTATNDPTAHAEVTAIRN 62
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 63 ACTALGHFQLDGCDVYSSCEPCPMC 87
>gi|257464722|ref|ZP_05629093.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
gi|257450382|gb|EEV24425.1| tRNA-adenosine deaminase [Actinobacillus minor 202]
Length = 150
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + V ++V K G ++G G HAE+QA+ AG+
Sbjct: 1 MQYALSLADKAEQEGEI--PVGAVLVDKSGKIVGEGWNRSIILSDPTAHAEIQAIRMAGQ 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 59 HLQNYRLLDTTLYVTLEPCPMC 80
>gi|256844520|ref|ZP_05550006.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
125-2-CHN]
gi|256849091|ref|ZP_05554524.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
MV-1A-US]
gi|262047573|ref|ZP_06020528.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
MV-3A-US]
gi|312977923|ref|ZP_07789669.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
crispatus CTV-05]
gi|256613598|gb|EEU18801.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
125-2-CHN]
gi|256713867|gb|EEU28855.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
MV-1A-US]
gi|260572149|gb|EEX28714.1| cytidine/deoxycytidylate deaminase [Lactobacillus crispatus
MV-3A-US]
gi|310895230|gb|EFQ44298.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
crispatus CTV-05]
Length = 166
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 3 VSSFDAR-FMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPH 54
+SS D R +M A+ ++ G + ++V DG V+G G H
Sbjct: 2 LSSEDKRKYMQLAIDQAKEAEKQGEV----PIGAVVVDPDGRVVGTGYNRRELDEDATQH 57
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A++EA + +VTLEPC
Sbjct: 58 AEMIAIKEACSKLGMWRLIDCSLFVTLEPCPMC 90
>gi|213962212|ref|ZP_03390476.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
sputigena Capno]
gi|213955218|gb|EEB66536.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
sputigena Capno]
Length = 144
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM AL ++ V +I D +I + HAE+QA+
Sbjct: 2 NTDEYFMQKALEEAQIAFEEDEI--PVGAIITIDNRIIAKAHNLTERLKDVTAHAEMQAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T Y+TLEPC+
Sbjct: 60 TMAAHYLGGKYLTDCTMYITLEPCAMC 86
>gi|284040230|ref|YP_003390160.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM
74]
gi|283819523|gb|ADB41361.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM
74]
Length = 144
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
MP D FM AL + G V ++V +I + H
Sbjct: 1 MP----DDYFMEIALTLAEEAADNGEI----PVGAIVVCRNRIIAKARNQTEQLKDVTAH 52
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ A+ A + T YVTLEPC
Sbjct: 53 AEIMAITSATQYLGSKYLPDCTMYVTLEPCVMC 85
>gi|119509403|ref|ZP_01628552.1| cytosine deaminase [Nodularia spumigena CCY9414]
gi|119466017|gb|EAW46905.1| cytosine deaminase [Nodularia spumigena CCY9414]
Length = 143
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D FM AA+ ++ + ++VKDG +IGRG HAE+ L
Sbjct: 1 MDE-FMEAAIAQAKQGRKEGGI--PIGSVLVKDGKIIGRGHNKRVQDNDPVTHAEIDCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG RG T Y TL PC
Sbjct: 58 NAGRVGSYRGTTLYSTLMPCYLC 80
>gi|76789589|ref|YP_328675.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis
A/HAR-13]
gi|237803276|ref|YP_002888470.1| Cytosine deaminase [Chlamydia trachomatis B/Jali20/OT]
gi|237805197|ref|YP_002889351.1| Cytosine deaminase [Chlamydia trachomatis B/TZ1A828/OT]
gi|76168119|gb|AAX51127.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis
A/HAR-13]
gi|231273497|emb|CAX10413.1| Cytosine deaminase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274510|emb|CAX11306.1| Cytosine deaminase [Chlamydia trachomatis B/Jali20/OT]
Length = 163
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R P V C+IV +I RG + HAE+ +
Sbjct: 4 EKDLFFMKKALDEARKA-YEQDEVP-VGCIIVHGDKIIARGHNSVEQLKDSTAHAEMICI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A E + Y TLEPC
Sbjct: 62 SAAAEYLENWRLKDTILYCTLEPCLMC 88
>gi|189462552|ref|ZP_03011337.1| hypothetical protein BACCOP_03242 [Bacteroides coprocola DSM 17136]
gi|189430713|gb|EDU99697.1| hypothetical protein BACCOP_03242 [Bacteroides coprocola DSM 17136]
Length = 144
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M AL ++ G V ++V +I R T HAE+Q
Sbjct: 2 ADDVFYMKQALIEAQKAADRGEV----PVGAVVVCRDRIIARSHNLTETLNDVTAHAEMQ 57
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 58 AITAAANTLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQR 111
Query: 114 RGLQWLSQKGIIV 126
L K ++V
Sbjct: 112 YAPDALHPKTVVV 124
>gi|283768643|ref|ZP_06341555.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bulleidia extructa W1219]
gi|283105035|gb|EFC06407.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bulleidia extructa W1219]
Length = 195
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
+ + + +MS A+ ++ S + C+IV D +VI R HAEV+
Sbjct: 41 MKNREEYYMSLAIEEAKKA--ELSDEVPIGCVIVCDDMVIARNHNHKESKNNAIYHAEVE 98
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC
Sbjct: 99 AILEASKVKNNWNLNDCDLYVTLEPCMMC 127
>gi|311106622|ref|YP_003979475.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
gi|310761311|gb|ADP16760.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8]
Length = 163
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
P ++ DA FM AL+ ++ +G V L+V G ++GRG + H
Sbjct: 6 PWTAQDASFMELALQEAQAAYDIGEV----PVGALVVSAQGDILGRGYNRTIIDHDPTAH 61
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL A G T YVTLEPC
Sbjct: 62 AEIVALRGAARALENYRLPGITVYVTLEPCVMC 94
>gi|120611742|ref|YP_971420.1| CMP/dCMP deaminase [Acidovorax citrulli AAC00-1]
gi|120590206|gb|ABM33646.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax citrulli
AAC00-1]
Length = 484
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D +M AL+ V ++V+DG ++ RG A HAE+ AL
Sbjct: 19 DEAWMRIALQ--EAAEAAARGEIPVGAVVVRDGELVARGSNAPIAGHDPTAHAEIVALRA 76
Query: 63 A-----GEEARGATAYVTLEPCSHYG 83
A G T YVTLEPC+
Sbjct: 77 AAGRLGNYRLDGCTLYVTLEPCAMCS 102
>gi|15902066|ref|NP_357616.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae R6]
gi|116516620|ref|YP_815440.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae D39]
gi|148987738|ref|ZP_01819201.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
gi|15457551|gb|AAK98826.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077196|gb|ABJ54916.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae D39]
gi|147926202|gb|EDK77275.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73]
Length = 155
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|77407016|ref|ZP_00784028.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae H36B]
gi|77174376|gb|EAO77233.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae H36B]
Length = 168
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM AL+ ++ + + C+IVKDG +IGRG A HAE+ A+ A
Sbjct: 10 EWFMXEALKEAKSSLEK--EEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E T +VT+EPC
Sbjct: 68 NEKVGNWRLLDTTLFVTVEPCVMCS 92
>gi|325968187|ref|YP_004244379.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Vulcanisaeta moutnovskia 768-28]
gi|323707390|gb|ADY00877.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Vulcanisaeta moutnovskia 768-28]
Length = 219
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 10/220 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ ++ + A S D I S ++ ++H +RA DAI+VG TV+ DDP
Sbjct: 1 MPKPYVIIVSAASIDGRIASKTGYSR-LSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT R ++ P+R+I+D ++ L +K+I +I+ TE D +
Sbjct: 60 LTPRYVKAIKN-PIRVIIDGKLRIPLTAKVITNKEAPTIIVTTEQSDRNKTAQLMNMGVE 118
Query: 267 IIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ L + +GV +LVEGG + I + D I L S V G G
Sbjct: 119 VWVMGKERVNLRDVLEKLFTEKGVKRVLVEGGGHLNWELIKEEIADEIRLTISPYVFGAG 178
Query: 324 -----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
G P V G +V L+Y +
Sbjct: 179 TSFIEGEGYPTTMEGPRLRLKSVNICECGQEVVLDYTIEK 218
>gi|22536583|ref|NP_687434.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 2603V/R]
gi|25010509|ref|NP_734904.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae NEM316]
gi|76788440|ref|YP_329120.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae A909]
gi|77408782|ref|ZP_00785512.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae COH1]
gi|77412323|ref|ZP_00788636.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae CJB111]
gi|77413967|ref|ZP_00790141.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 515]
gi|22533418|gb|AAM99306.1|AE014209_19 cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 2603V/R]
gi|23094862|emb|CAD46080.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563497|gb|ABA46081.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae A909]
gi|77160003|gb|EAO71140.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 515]
gi|77161612|gb|EAO72610.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae CJB111]
gi|77172627|gb|EAO75766.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae COH1]
gi|319744400|gb|EFV96759.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC
13813]
Length = 168
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM+ AL+ ++ + + C+IVKDG +IGRG A HAE+ A+ A
Sbjct: 10 EWFMTEALKEAKSSLEK--EEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E T +VT+EPC
Sbjct: 68 NEKVGNWRLLDTTLFVTVEPCVMCS 92
>gi|86140825|ref|ZP_01059384.1| putative cytosine/adenosine deaminase [Leeuwenhoekiella
blandensis MED217]
gi|85832767|gb|EAQ51216.1| putative cytosine/adenosine deaminase [Leeuwenhoekiella
blandensis MED217]
Length = 151
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
D FM AL+ + +G V ++ + +I R + HAE+QA
Sbjct: 8 DDHYFMKKALQEAETAFELGEI----PVGAVVTVNNRIIARAHNLTERLHDVTAHAEMQA 63
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ +T YVTLEPC
Sbjct: 64 ITAAANFLGGKYLTDSTLYVTLEPCQMC 91
>gi|187776528|ref|ZP_02993001.1| hypothetical protein CLOSPO_00031 [Clostridium sporogenes ATCC
15579]
gi|187775187|gb|EDU38989.1| hypothetical protein CLOSPO_00031 [Clostridium sporogenes ATCC
15579]
Length = 148
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++ A+ ++ + G V +IVK+ +I + HAEV A+++A
Sbjct: 4 YIEYAIIEAKKALAIGEV----PVGAVIVKENKIIAKSHNLKEELKDPTAHAEVLAIKKA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ +G YVTLEPC+
Sbjct: 60 CKILGNWRLKGCKMYVTLEPCAMC 83
>gi|167771010|ref|ZP_02443063.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
17241]
gi|167666680|gb|EDS10810.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM
17241]
Length = 151
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM ALR + G V ++V DG ++G G T HAE++A+
Sbjct: 3 DNDFMGEALRLAGCAAERGEV----PVGAVVVCDGQIVGTGFNRRETGKNALAHAELEAI 58
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ A G YVTLEPC
Sbjct: 59 DAACRRLGGWRLHRCELYVTLEPCPMC 85
>gi|289422456|ref|ZP_06424299.1| tRNA-specific adenosine deaminase [Peptostreptococcus anaerobius
653-L]
gi|289157028|gb|EFD05650.1| tRNA-specific adenosine deaminase [Peptostreptococcus anaerobius
653-L]
Length = 154
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM AL +R L + +IV G ++GRG HAE+ A+ +A
Sbjct: 4 EYFMEQALVEARKAYAL--KETPIGAVIVYQGRIVGRGFNQVELQNNPLAHAEIMAINDA 61
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 62 VKNLARWRLYDCQMYVTMEPCFMC 85
>gi|94496883|ref|ZP_01303457.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
gi|94423559|gb|EAT08586.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58]
Length = 175
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D+++M A+ + G + + +A +IV DG V+ +GV HAE+
Sbjct: 13 MDETDSKWMQRAIDLA-RSKGSSPQDTPIAAIIVLDGAVLAQGVNETDERCDATAHAEMM 71
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A AG+ + RGAT Y TL+PC
Sbjct: 72 AFRAAGQVHGDMDLRGATLYSTLQPCGMC 100
>gi|88801642|ref|ZP_01117170.1| putative cytosine/adenosine deaminase [Polaribacter irgensii
23-P]
gi|88782300|gb|EAR13477.1| putative cytosine/adenosine deaminase [Polaribacter irgensii
23-P]
Length = 149
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M D FM A + + G V +IV +I R T H
Sbjct: 1 MIQPFDDIYFMKKAFQEAENAFDKGEI----PVGAVIVLKDQIIARAHNLTETLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA A G+ + YVTLEPC
Sbjct: 57 AEMQAFTSAADFLGGKYLKECVLYVTLEPCQMC 89
>gi|255035691|ref|YP_003086312.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM
18053]
gi|254948447|gb|ACT93147.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM
18053]
Length = 140
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGG--CPHAEVQAL 60
+F+ + G + N V +IV++G+++G G T HAEV+A+
Sbjct: 2 DEHHKFLQRCHELALQA-GRSG-NTPVGAVIVREGVIVGEGIEATRPDNDITRHAEVEAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
+A ++ G Y T EPC + Q
Sbjct: 60 RDALNRLGTDKLTGCAMYTTHEPCILCSYAIRHYQISW 97
>gi|121714253|ref|XP_001274737.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Aspergillus clavatus NRRL 1]
gi|119402891|gb|EAW13311.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Aspergillus clavatus NRRL 1]
Length = 191
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
A FM AL + G T V C++V+DG +IG G+ + G HAE
Sbjct: 16 PTHAYFMKQALLMGEKALEIGET----PVGCVLVRDGQLIGSGMNDTNKSMNGTRHAEFI 71
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+EE R YVT+EPC
Sbjct: 72 AIEEMLRSHPRSLLRSTDLYVTVEPCVMC 100
>gi|300727400|ref|ZP_07060809.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
bryantii B14]
gi|299775280|gb|EFI71879.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
bryantii B14]
Length = 155
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM A+ S V T P +IVKDG ++ + HAE+ + +A
Sbjct: 4 KDFMRRAIALSENSV-KTGGGP-FGAVIVKDGEIVAEASNSVTIDNDPTAHAEINCIRKA 61
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + G Y + EPC
Sbjct: 62 TKILKSFDLAGCDIYTSCEPCPMC 85
>gi|45659030|ref|YP_003116.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45602276|gb|AAS71753.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 222
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/217 (16%), Positives = 85/217 (39%), Gaps = 5/217 (2%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP
Sbjct: 1 MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ R + I++ + + + + EN + I
Sbjct: 61 VVHLRYVDNVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQI 120
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
I + K L +L G +L+EGG ++ SF LV I L +IG+ +
Sbjct: 121 VPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKKDL 180
Query: 326 PSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYIGK 357
PS + K + + + +++ L Y +
Sbjct: 181 PSITGGREEYLDFDLKKWNLISSETLENEIFLIYENE 217
>gi|24216718|ref|NP_714199.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
serovar Lai str. 56601]
gi|24198069|gb|AAN51217.1| riboflavin-specific deaminase/reductase [Leptospira interrogans
serovar Lai str. 56601]
Length = 222
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/217 (16%), Positives = 85/217 (39%), Gaps = 5/217 (2%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP
Sbjct: 1 MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ R + I++ + + + + EN + I
Sbjct: 61 VVHLRYVDNVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQI 120
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
I + K L +L G +L+EGG ++ SF LV I L +IG+ +
Sbjct: 121 VPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKKDL 180
Query: 326 PSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYIGK 357
PS + K + + + +++ L Y +
Sbjct: 181 PSITGGREEYLDFDLKKWNLISSETLENEIFLIYENE 217
>gi|253583057|ref|ZP_04860275.1| deoxycytidylate deaminase [Fusobacterium varium ATCC 27725]
gi|251835263|gb|EES63806.1| deoxycytidylate deaminase [Fusobacterium varium ATCC 27725]
Length = 163
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 26/102 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT-------------AYG 50
+D FM AL ++ N V IV + +IG G
Sbjct: 8 EWDEYFMGVALLSAKRSK---DPNTQVGACIVNEERRIIGVGYNGLPKGCSDDEFPWERD 64
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + T YV L PC
Sbjct: 65 GEFLDTKYPFVCHAELNAILNSTKTLKNCTLYVALFPCHECS 106
>gi|189204912|ref|XP_001938791.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985890|gb|EDU51378.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 234
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
++ FM A+ + + S V C+ VKDG +IGRG+ G HAE A+
Sbjct: 7 AYHEGFMREAIAMAELAL--KSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 64
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 65 AGILSKHPISILNETDLYVTVEPCVMC 91
>gi|119486194|ref|ZP_01620254.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC
8106]
gi|119456685|gb|EAW37814.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC
8106]
Length = 252
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 77/248 (31%), Gaps = 27/248 (10%)
Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197
++ + R H T+ +A+S D I + A +D +L G
Sbjct: 1 MNNINFPNLLNRPHTTVILAMSADGKIADKNRSPARFGSPTDTTHLETQIADADGVLFGR 60
Query: 198 GTVLADDPEL--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
GT+ L R + P++I+ K++ + + + ++ ++ +
Sbjct: 61 GTLDTYGTTLSVSSEELLQRRQQQEKSPQPIQIVCSSSGKINPNLRFFQQSVPRWLLTTS 120
Query: 250 ENDDPVLALAFRKKNINII---------------YCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + V N+ + D + G+ L V G
Sbjct: 121 QGSEQVKRENLHLTNLPDKSADFQQILIAKTLSENSNLIDWNDAFQQFMQMGLKRLAVLG 180
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350
G + S I L+D L +++G P+P+E + ++
Sbjct: 181 GGQLVGSLIQMDLIDEFWLTVCPLILGGVDAPTPVEGKGFLADVSPRLQLLEVKQVEQEI 240
Query: 351 CLEYIGKN 358
+ Y
Sbjct: 241 FIHYQVDR 248
>gi|255693703|ref|ZP_05417378.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
finegoldii DSM 17565]
gi|260620520|gb|EEX43391.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
finegoldii DSM 17565]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL + G V ++V +I R T HAE+QA
Sbjct: 3 DDTYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAEMQA 58
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 59 ITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQKY 112
Query: 115 GLQWLSQKGIIV 126
+ L K ++V
Sbjct: 113 AVSALHPKTVVV 124
>gi|317403100|gb|EFV83631.1| zinc-binding hydrolase [Achromobacter xylosoxidans C54]
Length = 163
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPH 54
P ++ DA FM+ AL +R +G V L+V G ++GRG + H
Sbjct: 6 PWTAQDADFMTLALDEARAAYDIGEV----PVGALVVSAQGDILGRGYNRTIIDHDPTAH 61
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL A G T YVTLEPC
Sbjct: 62 AEIVALRGAARALENYRLPGITVYVTLEPCVMC 94
>gi|319648541|ref|ZP_08002756.1| YaaJ protein [Bacillus sp. BT1B_CT2]
gi|317389389|gb|EFV70201.1| YaaJ protein [Bacillus sp. BT1B_CT2]
Length = 160
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+ D +M A+ +R G + ++V DG +I R T HAE+
Sbjct: 2 TQDEFYMKEAVNEARKAEEKGEV----PIGAVLVLDGEIIARAHNLRETEQRSVAHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
+EEA A YVTLEPC
Sbjct: 58 VIEEACRKLGTWRLERAVLYVTLEPCPMC 86
>gi|312891108|ref|ZP_07750631.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
gi|311296416|gb|EFQ73562.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
Length = 159
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D FM AL+ +R + + L+V G +IGRG HAE+QAL
Sbjct: 16 DDFFMKEALKEARLALAEDEI--PIGALVVCKGQIIGRGHNLTERLNDVSAHAEMQALTA 73
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC
Sbjct: 74 ATNYTGGKYLPDCTLYVTMEPCVMC 98
>gi|311112334|ref|YP_003983556.1| tRNA-adenosine deaminase [Rothia dentocariosa ATCC 17931]
gi|310943828|gb|ADP40122.1| tRNA-adenosine deaminase [Rothia dentocariosa ATCC 17931]
Length = 176
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
+ R+M AL + + ++V +G +IG G + HAE+ A
Sbjct: 23 AEHERWMRLALDEGKRAACAGEI--PIGAVVVNAEGEIIGSGHNSREHDHDPTGHAEIHA 80
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQF----IIECGIRRVVVCVDDPDVR 110
+ +A + T VT+EPC + A+ + + V +R
Sbjct: 81 IRQAAQHLKTWRLEECTLVVTVEPCLMCAGAILMARIPTVVMGAWEEKTGAVGSQYDVLR 140
Query: 111 VSGRGLQWLSQKG 123
GL G
Sbjct: 141 DRRLGLDVQVYAG 153
>gi|325092201|gb|EGC45511.1| tRNA specific adenosine deaminase [Ajellomyces capsulatus H88]
Length = 197
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
FM AL + G T V C++V + VIG G+ + G HAE A+
Sbjct: 17 HEYFMKKALDMGEEALASGET----PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAI 72
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EE R YVT+EPC
Sbjct: 73 EEVLRNYPRSIFRETDLYVTVEPCIMC 99
>gi|332879982|ref|ZP_08447666.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681978|gb|EGJ54891.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM AL + V +I D +I R HAE+QA+
Sbjct: 4 DEYFMQKALEEAEVAFEEDEI--PVGAIITIDNRIIARAHNMTERLNDVTAHAEMQAITM 61
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ + T Y+TLEPC+
Sbjct: 62 AANYLGGKYLKDCTMYLTLEPCAMC 86
>gi|197294746|ref|YP_001799287.1| Cytidine/deoxycytidylate deaminase family protein [Candidatus
Phytoplasma australiense]
gi|171854073|emb|CAM12046.1| Cytidine/deoxycytidylate deaminase family protein [Candidatus
Phytoplasma australiense]
Length = 166
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
M + + FM AA + + V ++V + +I R HAE
Sbjct: 1 MTQNDKNLFFMKAAFQEAYKAYLK--KEVPVGAVVVLNNQIIARAHNNRKQKNLFFGHAE 58
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
AL +A ++ + ++ YVTLEPC
Sbjct: 59 FLALIKANKKLKNRRLTNSSVYVTLEPCLMC 89
>gi|148555831|ref|YP_001263413.1| CMP/dCMP deaminase, zinc-binding [Sphingomonas wittichii RW1]
gi|148501021|gb|ABQ69275.1| CMP/dCMP deaminase, zinc-binding [Sphingomonas wittichii RW1]
Length = 163
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + + RF+ AA+ +R +V ++VKDG ++ GV HAE
Sbjct: 1 MTGPADEQRFLRAAIELARDNVAQGGR--PFGAVVVKDGAIVAVGVNEILATNDPTAHAE 58
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
+ A+ AG G T Y + PC
Sbjct: 59 LGAIRAAGRRLGSPDLSGCTVYASGHPCPMC 89
>gi|88603813|ref|YP_503991.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
hungatei JF-1]
gi|88189275|gb|ABD42272.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanospirillum hungatei JF-1]
Length = 225
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 14/225 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + +AVS D + V I+G ++V ++A DAI+VGIGTVLADDP L
Sbjct: 1 MRPYVIVNVAVSADGKLSTRERRQVKISGKEDFDRVDEIKAGCDAIMVGIGTVLADDPSL 60
Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
T R+ + P+RI++D + D+KI+ +I V+ A
Sbjct: 61 TIKSADRIAERVRNGKPEHPVRIVVDSQARTPPDAKILHKGPGLRIIAVSLAAPEENISA 120
Query: 260 -FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
I DL LLT L +G+ L+VEGG + +++ LVD + ++ I
Sbjct: 121 LKNHAEIIQAGEVTVDLPVLLTKLAEKGIKRLMVEGGGTLIWGMLSAGLVDELTMFVGNI 180
Query: 319 VIGEGGIPSPLEEGY--LEKNF---MCVRRDYFGSDVCLEYIGKN 358
+IG P+ + LE +F + V + + +
Sbjct: 181 IIGGKDAPTLADGTGYVLESDFPVLERMDVIPMEEGVLIHWKVRK 225
>gi|302334869|ref|YP_003800076.1| tRNA-adenosine deaminase [Olsenella uli DSM 7084]
gi|301318709|gb|ADK67196.1| tRNA-adenosine deaminase [Olsenella uli DSM 7084]
Length = 163
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
+ D RFM AL + T + ++V G VI R HAE A
Sbjct: 9 TVEDERFMGLALEEACIAA--TEDEVPIGAVVVCGGEVIARAHNRRETDGDPSAHAEFSA 66
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A G T YVTLEPC
Sbjct: 67 MVQAARALGRWRLTGCTVYVTLEPCLMC 94
>gi|148985360|ref|ZP_01818565.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
gi|148986205|ref|ZP_01819157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP3-BS71]
gi|148995215|ref|ZP_01824050.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
pneumoniae SP9-BS68]
gi|149004172|ref|ZP_01828969.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP14-BS69]
gi|149023458|ref|ZP_01836047.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
gi|168483689|ref|ZP_02708641.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC1873-00]
gi|168486729|ref|ZP_02711237.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC1087-00]
gi|169833520|ref|YP_001693493.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
Hungary19A-6]
gi|221230966|ref|YP_002510118.1| deaminase [Streptococcus pneumoniae ATCC 700669]
gi|225853633|ref|YP_002735145.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
gi|225857883|ref|YP_002739393.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
70585]
gi|237650015|ref|ZP_04524267.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
1974]
gi|237822610|ref|ZP_04598455.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI
1974M2]
gi|147757834|gb|EDK64845.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP14-BS69]
gi|147921819|gb|EDK72947.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP3-BS71]
gi|147922318|gb|EDK73438.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71]
gi|147926817|gb|EDK77872.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
pneumoniae SP9-BS68]
gi|147929781|gb|EDK80771.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72]
gi|168996022|gb|ACA36634.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
Hungary19A-6]
gi|172043028|gb|EDT51074.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC1873-00]
gi|183570307|gb|EDT90835.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC1087-00]
gi|220673426|emb|CAR67886.1| putative deaminase [Streptococcus pneumoniae ATCC 700669]
gi|225721389|gb|ACO17243.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
70585]
gi|225723035|gb|ACO18888.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA]
gi|301793341|emb|CBW35702.1| putative deaminase [Streptococcus pneumoniae INV104]
gi|301799211|emb|CBW31724.1| putative deaminase [Streptococcus pneumoniae OXC141]
gi|332075677|gb|EGI86144.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA17570]
gi|332204048|gb|EGJ18113.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA47901]
gi|332205041|gb|EGJ19104.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA47368]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|225860063|ref|YP_002741572.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229197|ref|ZP_06962878.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254029|ref|ZP_06977615.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501811|ref|YP_003723751.1| cytosine deaminase [Streptococcus pneumoniae TCH8431/19A]
gi|225728250|gb|ACO24101.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237406|gb|ADI68537.1| possible cytosine deaminase [Streptococcus pneumoniae
TCH8431/19A]
gi|327390436|gb|EGE88776.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA04375]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSKESWRLLDCTLFVTIEPCVMCS 91
>gi|182682990|ref|YP_001834737.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae CGSP14]
gi|303255537|ref|ZP_07341594.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS455]
gi|303260656|ref|ZP_07346619.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP-BS293]
gi|303260820|ref|ZP_07346769.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP14-BS292]
gi|303263147|ref|ZP_07349070.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS397]
gi|303267493|ref|ZP_07353343.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS457]
gi|303269460|ref|ZP_07355227.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS458]
gi|182628324|gb|ACB89272.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae CGSP14]
gi|301800992|emb|CBW33654.1| putative deaminase [Streptococcus pneumoniae INV200]
gi|302597498|gb|EFL64587.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS455]
gi|302637657|gb|EFL68143.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP14-BS292]
gi|302638186|gb|EFL68658.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP-BS293]
gi|302640994|gb|EFL71374.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS458]
gi|302642968|gb|EFL73265.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS457]
gi|302646920|gb|EFL77144.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae BS397]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|46446282|ref|YP_007647.1| hypothetical protein pc0648 [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399923|emb|CAF23372.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 166
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ D RFM AL+ + P V ++VKD +I RG HAE+ L
Sbjct: 11 NDDERFMLEALKEAWKA-FKADEVP-VGAVLVKDKHIIARGFNQVEMLKDATAHAEMLCL 68
Query: 61 EEAGE------EARGATAYVTLEPCSHY 82
AGE T Y T+EPCS
Sbjct: 69 T-AGESALDNWRLSETTLYCTVEPCSMC 95
>gi|83858225|ref|ZP_00951747.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
HTCC2633]
gi|83853048|gb|EAP90900.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii
HTCC2633]
Length = 210
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 95/209 (45%), Gaps = 8/209 (3%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
+TLK+A S D I +A S ITG ++ +VH +RA DAIL GIGTVLADDP++T R
Sbjct: 2 QVTLKLATSLDGRIALANGQSQWITGPEARAEVHRMRASHDAILTGIGTVLADDPQMTAR 61
Query: 211 LNGL-QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+G P RI+LD +L ++I+ PV +
Sbjct: 62 PDGALANRQPQRIVLDSQLRLPAYAEILTGE---PVWVFHTGGARSDLENVELFETEADD 118
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
++ L RGV S+++E G +A + I S V I +R+ +IG G
Sbjct: 119 GGRVSFSAVMQSLAARGVGSVMIEAGREIAGAAIRSDCVTRIEWFRAPRLIGAEGRACIA 178
Query: 327 -SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
LEE L F + G+D+ Y
Sbjct: 179 GLGLEELSLAPTFKRMEVRACGADLWETY 207
>gi|312879894|ref|ZP_07739694.1| tRNA-adenosine deaminase [Aminomonas paucivorans DSM 12260]
gi|310783185|gb|EFQ23583.1| tRNA-adenosine deaminase [Aminomonas paucivorans DSM 12260]
Length = 152
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M AL +R + V + V G ++GRG HAE++AL +A
Sbjct: 1 MGEALAEARLALEEGEI--PVGAVAVDHGRIVGRGRNRRKLQEAPFAHAEMEALRDACAS 58
Query: 66 ----EARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 59 LGTWRLDGVTLYVTLEPCPMC 79
>gi|319956637|ref|YP_004167900.1| cmp/dcmp deaminase zinc-binding protein [Nitratifractor
salsuginis DSM 16511]
gi|319419041|gb|ADV46151.1| CMP/dCMP deaminase zinc-binding protein [Nitratifractor
salsuginis DSM 16511]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++ A+ +R V +IV G ++ HAE+ A+ A
Sbjct: 4 EEYLQIAIGEARKGV-EAGHGGPFGAVIVYRGEIVSTAHNEVVLRNDPTAHAEILAIRLA 62
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
GE+ G T Y T EPC
Sbjct: 63 GEKLQRFHLNGCTLYCTGEPCPMC 86
>gi|293400048|ref|ZP_06644194.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306448|gb|EFE47691.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 157
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
FM A++ + + C+IV +I R HAE+ A+E
Sbjct: 1 MHENFMLEAIKEAEKA--FAIDEVPIGCVIVYQNKIIARAHNLRESKQSAIAHAEILAIE 58
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
+A T YVTLEPC
Sbjct: 59 KACNIIGSWRLEDCTLYVTLEPCPMCS 85
>gi|91201071|emb|CAJ74129.1| strongly similar to fungal cytosine deaminase [Candidatus
Kuenenia stuttgartiensis]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
RFM A+ ++ + + ++VKDG +IGRG HAE+ L +G
Sbjct: 3 RFMRTAIEEAKQGLLEGGI--PIGSVLVKDGEIIGRGHNKRVQENNPIAHAEIDCLVNSG 60
Query: 65 E--EARGATAYVTLEPCSHY 82
+ G T Y TL PC
Sbjct: 61 RVGKYSGTTLYSTLMPCYLC 80
>gi|50513754|pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium
Target Sr160
gi|50513755|pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium
Target Sr160
Length = 164
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V +IVKDG +I G T+ HAEV A+ +
Sbjct: 3 HETFLKRAVTLACEGV-NAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 62 ACKVLGAYQLDDCILYTSCEPCPXC 86
>gi|221129263|ref|XP_002158148.1| PREDICTED: similar to tRNA-specific adenosine deaminase [Hydra
magnipapillata]
Length = 226
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ + FM AL ++ + G V C+I+ D IVI G HAE
Sbjct: 39 FQNINEEFMKKALVMAKVALEKGEV----PVGCVIIHDNIVIADGYNDVNRTKNATRHAE 94
Query: 57 VQALE-------EAGEEAR---GATAYVTLEPCSHY 82
+ ALE +AG+ YVT EPC
Sbjct: 95 IIALEKARFYFLQAGKNLNSMSECVLYVTTEPCIMC 130
>gi|73541535|ref|YP_296055.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
gi|72118948|gb|AAZ61211.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134]
Length = 177
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D R++ AA+ +R G V ++V + +I RG HAE+Q
Sbjct: 11 ARDERYLRAAMDEARLAEAAGEV----PVGAVVVWNDAIIARGHNLPIKSMDPSAHAEMQ 66
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHYG 83
AL A + YVTLEPC+
Sbjct: 67 ALRAAAQVLGNYRMPECELYVTLEPCAMCS 96
>gi|330998189|ref|ZP_08322015.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paraprevotella xylaniphila YIT 11841]
gi|329568881|gb|EGG50679.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paraprevotella xylaniphila YIT 11841]
Length = 144
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ DA +M AL +R V ++V ++ R T HAE+Q +
Sbjct: 2 ADDAFYMKKALEEARRAYDEDEI--PVGAVVVCGDRILARAHNLTETLTDATAHAEMQVI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 60 TAAANALGGKYLNECTLYVTLEPCVMC 86
>gi|288802991|ref|ZP_06408427.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
melaninogenica D18]
gi|302345191|ref|YP_003813544.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella melaninogenica ATCC 25845]
gi|288334508|gb|EFC72947.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
melaninogenica D18]
gi|302149710|gb|ADK95972.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella melaninogenica ATCC 25845]
Length = 150
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 17/149 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
S D FM AL + P + ++V +I R T HAE+QA
Sbjct: 7 SKKDLYFMQRALAEAE-AAYKEGEIP-IGAVVVCRDRIIARAHNLTETLNDVTAHAEMQA 64
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ + T YVT+EPC CA I ++R+V D
Sbjct: 65 ITMAANELGGKYLQDCTLYVTVEPCI------MCAGAIGWAQLQRIVYGCPDEKRGYHEY 118
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ K + +ME E + + +
Sbjct: 119 APKAFHPKANVTYGVMEEECRALMQRFFQ 147
>gi|11499353|ref|NP_070592.1| dCMP deaminase, putative [Archaeoglobus fulgidus DSM 4304]
gi|2648787|gb|AAB89487.1| dCMP deaminase, putative [Archaeoglobus fulgidus DSM 4304]
Length = 157
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 33/112 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
M + D FM A ++ L V +IVKD ++ G G P
Sbjct: 1 MKRPTLDEYFMEIASVVAKRSTCLRQH---VGAVIVKDKRILATGYNGAPSGLPHCEEVG 57
Query: 54 --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G G T Y T PC
Sbjct: 58 CLRDRMSVPSGERQELCRGVHAEQNAIIQAAKFGISVDGGTLYSTHCPCITC 109
>gi|289166926|ref|YP_003445193.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
mitis B6]
gi|288906491|emb|CBJ21321.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
mitis B6]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALREADIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLIDCTLFVTIEPCVMCS 91
>gi|255261482|ref|ZP_05340824.1| tRNA-specific adenosine deaminase [Thalassiobium sp. R2A62]
gi|255103817|gb|EET46491.1| tRNA-specific adenosine deaminase [Thalassiobium sp. R2A62]
Length = 147
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63
FM AL +R G V ++V DG V+ R HAEV A+ EA
Sbjct: 5 FMDQALEQARLAGARGEV----PVGAVVVADGKVVAAQGNRTRERNDPTAHAEVLAIREA 60
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E G YVTLEPC
Sbjct: 61 CAAAGSERLVGHDLYVTLEPCPMC 84
>gi|149006819|ref|ZP_01830505.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
pneumoniae SP18-BS74]
gi|307126250|ref|YP_003878281.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
670-6B]
gi|147761734|gb|EDK68698.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus
pneumoniae SP18-BS74]
gi|306483312|gb|ADM90181.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
670-6B]
gi|332076481|gb|EGI86943.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA17545]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|153808687|ref|ZP_01961355.1| hypothetical protein BACCAC_02986 [Bacteroides caccae ATCC 43185]
gi|149128513|gb|EDM19731.1| hypothetical protein BACCAC_02986 [Bacteroides caccae ATCC 43185]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 21/132 (15%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL + G V ++V +I R T HAE+QA
Sbjct: 3 DDTYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAEMQA 58
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 59 ITAAANVLGGKYLSECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQRY 112
Query: 115 GLQWLSQKGIIV 126
L K ++V
Sbjct: 113 AADALHPKTVVV 124
>gi|325121723|gb|ADY81246.1| guanine deaminase (Guanase) [Acinetobacter calcoaceticus PHEA-2]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+F+ A+ + ++ ++VK+G +I GV HAE+ A+ A
Sbjct: 5 EQFLRKAIELAYNNIEKGGR--PFGAVVVKNGEIIASGVNQILVTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + Y + PC
Sbjct: 63 SQVLGSANLEGCSVYASGHPCPMC 86
>gi|153952715|ref|YP_001393480.1| hypothetical protein CKL_0054 [Clostridium kluyveri DSM 555]
gi|219853386|ref|YP_002470508.1| hypothetical protein CKR_0043 [Clostridium kluyveri NBRC 12016]
gi|146345596|gb|EDK32132.1| TadA [Clostridium kluyveri DSM 555]
gi|219567110|dbj|BAH05094.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
FM A++ + + G V ++VK+ +I R T HAE+ A+ A
Sbjct: 4 FMFEAIKQAEMALQLGEV----PVGAVVVKNNNIISRAYNLKETLKDSTAHAEILAIRSA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ + + YVTLEPC
Sbjct: 60 SKVVKNWRLKDCSMYVTLEPCPMC 83
>gi|15899968|ref|NP_344572.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae TIGR4]
gi|111657255|ref|ZP_01408023.1| hypothetical protein SpneT_02001535 [Streptococcus pneumoniae
TIGR4]
gi|148996424|ref|ZP_01824142.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP11-BS70]
gi|149010880|ref|ZP_01832185.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
gi|168492307|ref|ZP_02716450.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC0288-04]
gi|168576944|ref|ZP_02722786.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
MLV-016]
gi|225855809|ref|YP_002737320.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
P1031]
gi|307066702|ref|YP_003875668.1| cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
gi|14971484|gb|AAK74212.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae TIGR4]
gi|147756999|gb|EDK64038.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
pneumoniae SP11-BS70]
gi|147764516|gb|EDK71446.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75]
gi|183573448|gb|EDT93976.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
CDC0288-04]
gi|183577431|gb|EDT97959.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
MLV-016]
gi|225725405|gb|ACO21257.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae
P1031]
gi|306408239|gb|ADM83666.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae AP200]
gi|332077311|gb|EGI87772.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA41301]
gi|332201950|gb|EGJ16019.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Streptococcus pneumoniae GA41317]
Length = 155
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|292493710|ref|YP_003529149.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
Nc4]
gi|291582305|gb|ADE16762.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus
Nc4]
Length = 142
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M AL +R G V ++V++G ++ G TA HAE+QA+ A
Sbjct: 1 MHHALVLARHAEERGEV----PVGAVLVQEGEMVAEGWNCPITAKDPTAHAEIQAIRAAS 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ G T YVTLEPC+
Sbjct: 57 QQLGNYRLVGTTLYVTLEPCAMC 79
>gi|163782336|ref|ZP_02177334.1| hypothetical protein HG1285_06100 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882369|gb|EDP75875.1| hypothetical protein HG1285_06100 [Hydrogenivirga sp. 128-5-R1-1]
Length = 147
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
F+ AL+ + +G V C++VK G V+ R HAE+ AL
Sbjct: 3 EVFLKEALKEAERAYALGEV----PVGCVVVKGGNVLARAHNRTEELKDASAHAELLALR 58
Query: 62 EAGE-----EARGATAYVTLEPCSHYGR 84
EA + G YVTLEPC
Sbjct: 59 EAAKVLGDWRLEGCELYVTLEPCVMCAY 86
>gi|303237080|ref|ZP_07323650.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella disiens FB035-09AN]
gi|302482467|gb|EFL45492.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella disiens FB035-09AN]
Length = 150
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
D +M AL + G V +IV +I R HAE+Q
Sbjct: 8 KKDEYYMGRALAMAEEAFEKGEV----PVGAVIVCRNHIISRAHNLTEALTDVTAHAEMQ 63
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
A+ + G+ + T YVT+EPC
Sbjct: 64 AITMSANELGGKYLQDCTLYVTVEPCIMC 92
>gi|237755949|ref|ZP_04584538.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691898|gb|EEP60917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 221
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 7/194 (3%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + +H RA+ D I+VG T+ D+P LT R +P RII
Sbjct: 27 KEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTDNPYLTVRYVS--GKNPTRIIPTSTA 84
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ D+ I+K ++ + L + K + I + DL K++ IL RG+
Sbjct: 85 YIPPDANILKKDSPTIIVTTEKAPKERLKMLSEKVEVIIAGKEEVDLIKMMDILYNRGIR 144
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRR 343
+L+VEGG+ + + I + LVD I + ++G P+ + +
Sbjct: 145 NLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVGGTDTPTLVGGEGFKSLEEVVKLKLRAH 204
Query: 344 DYFGSDVCLEYIGK 357
GS + E+ K
Sbjct: 205 FMRGSHLITEWEVK 218
>gi|300853298|ref|YP_003778282.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
13528]
gi|300433413|gb|ADK13180.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM
13528]
Length = 145
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 43/143 (30%), Gaps = 19/143 (13%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
FM A+R ++ + G V +IVKD +I HAE+ A++
Sbjct: 2 KDFMLEAIRQAKKGLKLGEV----PVGAVIVKDNEIISSCHNLKETVGIVTAHAEMLAIQ 57
Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A E G + YVTLEPC A + S +
Sbjct: 58 NASEILSNWRLTGCSMYVTLEPCPMC----AGAILQCRINKLYIGTFDPTMGACGSVVNI 113
Query: 117 QWLSQKGIIVDRMMESEGKIFLH 139
+ VD +
Sbjct: 114 LQNRRLNRWVDIQWMYNEQCSEM 136
>gi|332140490|ref|YP_004426228.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327550512|gb|AEA97230.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
macleodii str. 'Deep ecotype']
Length = 223
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
R+M AL + G V +V +G +IG G + HAE++
Sbjct: 57 EQHIRWMKHALALADSAESIGEV----PVGACVVLNGELIGEGYNTPISDHDPSAHAELR 112
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+++A + + AT YVTLEPCS
Sbjct: 113 AVKQAASKVQNYRLIDATLYVTLEPCSMC 141
>gi|326488167|dbj|BAJ89922.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 218
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
MP ++ FM AL +++ + V C+IV++G VI G HAE
Sbjct: 37 MPATA----FMELALDQAKFALDNLEV--PVGCVIVENGKVIASGSNRTNATRNATRHAE 90
Query: 57 VQALE--------------EAGEEARGATAYVTLEPCSHY 82
++A++ E+ G YVT EPC
Sbjct: 91 MEAIDVLLQEWQSIGLDQTLVAEKFAGCDLYVTCEPCIMC 130
>gi|116625482|ref|YP_827638.1| tRNA-adenosine deaminase [Candidatus Solibacter usitatus
Ellin6076]
gi|116228644|gb|ABJ87353.1| tRNA-adenosine deaminase [Candidatus Solibacter usitatus
Ellin6076]
Length = 142
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
M AL +R +G V +I G VIGRG HAE+ A+ EA
Sbjct: 1 MYQALALARSGAALGEV----PVGAVIALAGEVIGRGSNAPVAQMDPTAHAEILAIREAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
GAT Y TLEPC
Sbjct: 57 SRIANYRLTGATLYCTLEPCVMC 79
>gi|256786427|ref|ZP_05524858.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
TK24]
gi|289770318|ref|ZP_06529696.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
TK24]
gi|289700517|gb|EFD67946.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans
TK24]
Length = 376
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 2/140 (1%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P+++ + +L ++ T ++ + AL +++
Sbjct: 80 YPLKVTVSGSGELDPAARFWHTGGDKVLLTTDDGARRARALGIGADVVSLGADLDWRA-A 138
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-K 336
L + RGV L+VEGG V + L D + L + + +G+ P G +
Sbjct: 139 LEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFVGDPAAPRLFGPGAYQGG 198
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
V V + Y+
Sbjct: 199 RLRLVETRRIEDVVLMRYLP 218
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALE 61
+ D +++ A + + T SV ++V DG + RG + GG P HAE AL
Sbjct: 229 AADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAALA 287
Query: 62 EA---GEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ GAT Y +LEPC+ R PCA+ I++ G+RRVV +PD
Sbjct: 288 KVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTF 340
>gi|21222507|ref|NP_628286.1| bifunctional enzyme deaminase/reductase [Streptomyces coelicolor
A3(2)]
gi|5918510|emb|CAB56387.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
coelicolor A3(2)]
Length = 376
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 2/140 (1%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P+++ + +L ++ T ++ + AL +++
Sbjct: 80 YPLKVTVSGSGELDPAARFWHTGGDKVLLTTDDGARRARALGIGADVVSLGADLDWRA-A 138
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-K 336
L + RGV L+VEGG V + L D + L + + +G+ P G +
Sbjct: 139 LEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFVGDPAAPRLFGPGAYQGG 198
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
V V + Y+
Sbjct: 199 RLRLVETRRIEDVVLMRYLP 218
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALE 61
+ D +++ A + + T SV ++V DG + RG + GG P HAE AL
Sbjct: 229 AADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAALA 287
Query: 62 EA---GEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ GAT Y +LEPC+ R PCA+ I++ G+RRVV +PD
Sbjct: 288 KVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTF 340
>gi|330718918|ref|ZP_08313518.1| cytosine/adenosine deaminase [Leuconostoc fallax KCTC 3537]
Length = 169
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 7 DAR---FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV-TAYGG---CPHAEV 57
D + FM AAL +R G + +IV D +I R G HAE+
Sbjct: 9 DEQINDFMQAALDEARQAGSEGEV----PIGAVIVHDNQIIARAHNHREQGQQATAHAEL 64
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+E A + +VTLEPC
Sbjct: 65 LAIEAANQAAQSWRLENTALFVTLEPCMMC 94
>gi|269216548|ref|ZP_06160402.1| tRNA-specific adenosine deaminase [Slackia exigua ATCC 700122]
gi|269130077|gb|EEZ61159.1| tRNA-specific adenosine deaminase [Slackia exigua ATCC 700122]
Length = 212
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
D FM A +R G + ++V DG V+ R HAE
Sbjct: 55 EKDESFMREAYAEARRAFEEGEV----PIGAVVVCDGRVVARAHNRREADRDPSGHAEFS 110
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + G T YVT+EPC
Sbjct: 111 AMRAAAQALGRWRLSGCTVYVTVEPCIMC 139
>gi|189220193|ref|YP_001940833.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
gi|189187051|gb|ACD84236.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
Length = 173
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
S D FM AL ++ G V +IV+ ++G G HAE++
Sbjct: 15 SRDYYFMGLALEKAKEAFDNGEV----PVGAVIVRGEEILGFGRNRVERHRDVTAHAEME 70
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ ++ + T YVT EPC
Sbjct: 71 AIRQSQQRVGDWRLDSTTLYVTKEPCLMC 99
>gi|305664674|ref|YP_003860961.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
gi|88707375|gb|EAQ99621.1| putative cytosine/adenosine deaminase [Maribacter sp. HTCC2170]
Length = 154
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
+M+ ++ + N V LIV ++G G + HAE++A++
Sbjct: 13 HDFYMAKCIQLAEEAKQN--GNTPVGALIVSKDEILGIGRENTRSKKDITRHAEIEAIQN 70
Query: 63 AGEE---ARGATAYVTLEPCSHYGR 84
A ++ +GA Y T EPC
Sbjct: 71 ALKKVKSLKGAILYTTHEPCVMCSY 95
>gi|296111508|ref|YP_003621890.1| hypothetical protein LKI_06910 [Leuconostoc kimchii IMSNU 11154]
gi|295833040|gb|ADG40921.1| hypothetical protein LKI_06910 [Leuconostoc kimchii IMSNU 11154]
Length = 164
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL ++ G + +IVKD +I R HAE+ A+E
Sbjct: 14 YFMQVALNEAQLADEAGEV----PIGAVIVKDNEIIARAHNHREAHQLATAHAELVAIES 69
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A +VTLEPC
Sbjct: 70 ANHILNSWRLENTALFVTLEPCIMC 94
>gi|187250528|ref|YP_001875010.1| cytosine/adenosine deaminase [Elusimicrobium minutum Pei191]
gi|186970688|gb|ACC97673.1| Cytosine/adenosine deaminase [Elusimicrobium minutum Pei191]
Length = 163
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 1 MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
M + +F+ AA++ + V +IVKDG ++ +G
Sbjct: 1 MKTNEEHKLHIKFLRAAVKMAEKGV-KAGKGGPFGAVIVKDGKMVAKGYNRVTSSNDPSL 59
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAEV A+ +A ++ G Y + EPC
Sbjct: 60 HAEVDAIRKACKKLGSFELTGCIIYSSCEPCPMC 93
>gi|323488468|ref|ZP_08093714.1| hypothetical protein GPDM_03987 [Planococcus donghaensis MPA1U2]
gi|323397860|gb|EGA90660.1| hypothetical protein GPDM_03987 [Planococcus donghaensis MPA1U2]
Length = 162
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M D +M A+ + G + +IV VI R H
Sbjct: 1 MNEMEKDHFYMQLAIEEANKAAAKGEV----PIGAVIVYKDEVIARAHNLRETTNNAVTH 56
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A++EA YVTLEPC
Sbjct: 57 AELLAIQEACLHLGNWRLEDTKLYVTLEPCPMC 89
>gi|306840968|ref|ZP_07473709.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. BO2]
gi|306289025|gb|EFM60290.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. BO2]
Length = 157
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV++G +I R HAE+ A+ +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRNGEIIARAGNRTREFNDVTAHAEILAIRQAGEV 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|260886684|ref|ZP_05897947.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
35185]
gi|330839487|ref|YP_004414067.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena
ATCC 35185]
gi|260863536|gb|EEX78036.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC
35185]
gi|329747251|gb|AEC00608.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena
ATCC 35185]
Length = 168
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
D FM AL+ ++ G + ++V DG V+ R G HAE+
Sbjct: 3 DDIAFMKEALKEAQEAFQAGEV----PIGAVLVDADGTVVARAHNMRETWHDGTAHAEII 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL+EA G T YVT+EPC
Sbjct: 59 ALQEAARKLGRWRLSGLTLYVTIEPCPMC 87
>gi|196228535|ref|ZP_03127402.1| CMP/dCMP deaminase zinc-binding [Chthoniobacter flavus Ellin428]
gi|196227938|gb|EDY22441.1| CMP/dCMP deaminase zinc-binding [Chthoniobacter flavus Ellin428]
Length = 156
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM ALR +R + +IV G +I R HAE+ A+ +
Sbjct: 10 DTYFMGEALRQARRAWEQ--EEVPIGAVIVHQGRIIARACNQVEVLKDATAHAEMLAITQ 67
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A YVT EPC
Sbjct: 68 AESVLGDWRLNECDLYVTKEPCPMC 92
>gi|299134221|ref|ZP_07027414.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
gi|298590968|gb|EFI51170.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
Length = 148
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL+ + G + C++V DG VI + HAE+ AL EA
Sbjct: 6 FMDLALKQAEIAASGGEV----PIGCVVVHDGAVIAQAGNRTLADRDPTAHAEMVALREA 61
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 62 ARKLGRERLTDCDLYVTLEPCTMC 85
>gi|282880121|ref|ZP_06288841.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella timonensis CRIS 5C-B1]
gi|281305994|gb|EFA98034.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella timonensis CRIS 5C-B1]
Length = 151
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D FM AL ++ + ++V G +I R + HAE+ A+
Sbjct: 10 DEYFMRKALIEAQAAFDEGEI--PIGAVVVCKGQIISRAHNLTERLHDVTAHAEMLAITA 67
Query: 63 A-----GEEARGATAYVTLEPCSHYGRSP 86
A G+ T YVT+EPC +
Sbjct: 68 ATNQLGGKYLTDCTLYVTIEPCPMCASAC 96
>gi|332686456|ref|YP_004456230.1| tRNA-specific adenosine-34 deaminase [Melissococcus plutonius
ATCC 35311]
gi|332370465|dbj|BAK21421.1| tRNA-specific adenosine-34 deaminase [Melissococcus plutonius
ATCC 35311]
Length = 163
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
FM+ AL ++ +G + ++V +I RG HAE+ A+
Sbjct: 10 KFFMNEALTEAKKAEKLGEV----PIGAVVVYQKQIIARGYNLREKIQKATAHAEILAIN 65
Query: 62 EAG-----EEARGATAYVTLEPCSHYG 83
EA +VTLEPCS
Sbjct: 66 EACTFLNSWRLEETRLFVTLEPCSMCS 92
>gi|323344759|ref|ZP_08084983.1| tRNA-specific adenosine deaminase [Prevotella oralis ATCC 33269]
gi|323094029|gb|EFZ36606.1| tRNA-specific adenosine deaminase [Prevotella oralis ATCC 33269]
Length = 151
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D +FM AL + P + +IV +I R T + HAE+QA+
Sbjct: 11 DEQFMQKALIEA-KAAFDAGEIP-IGAVIVCKDRIIARAHNLTETLHDVTAHAEMQAITA 68
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
A + G T YVT+EPC+
Sbjct: 69 AADALGGKYLPECTLYVTIEPCTMC 93
>gi|325838575|ref|ZP_08166576.1| guanine deaminase [Turicibacter sp. HGF1]
gi|325490801|gb|EGC93104.1| guanine deaminase [Turicibacter sp. HGF1]
Length = 154
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++M A+ + V +IVKD VI + HAE+ A+ A
Sbjct: 2 EKYMKMAIEEAENGV-KCKHGGPFGAVIVKDNQVIAKAHNTVVKENDPTCHAEINAIRLA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ + + EPC
Sbjct: 61 SRTLNTFKLNDCLLFTSSEPCPMC 84
>gi|294790273|ref|ZP_06755431.1| tRNA-specific adenosine deaminase [Scardovia inopinata F0304]
gi|294458170|gb|EFG26523.1| tRNA-specific adenosine deaminase [Scardovia inopinata F0304]
Length = 185
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAE 56
S D + M+ AL+ + G V +++ + G +I +G HAE
Sbjct: 32 SLSDEQAMALALKNAVRAAQAGDV----PVGAVLLDNRGRLISQGYNQRQARADPLSHAE 87
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
++AL AG+ G + VT+EPC +
Sbjct: 88 IEALRAAGQVKGDWNLAGCSLIVTMEPCPMCAGAAVSVH 126
>gi|308803957|ref|XP_003079291.1| Cytosine deaminase FCY1 and related enzymes (ISS) [Ostreococcus
tauri]
gi|116057746|emb|CAL53949.1| Cytosine deaminase FCY1 and related enzymes (ISS) [Ostreococcus
tauri]
Length = 205
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE-- 56
+ D M ALR +R + P C +V+DG ++ RG A G HAE
Sbjct: 23 FTDADRAHMREALREARRAL-DAWEVPC-GCALVRDGEIVARGRNATNRTRNGTRHAEFE 80
Query: 57 -VQALEEAGEEARGA------TAYVTLEPCSHY 82
V AL A + A T YVT EPC
Sbjct: 81 AVDALLRAHDGDVDACGFEEMTLYVTCEPCVMC 113
>gi|302185724|ref|ZP_07262397.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. syringae 642]
Length = 169
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V++G +IGRG HAE+ A+
Sbjct: 10 SKDQYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 68 RQAAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|16330356|ref|NP_441084.1| hypothetical protein sll1631 [Synechocystis sp. PCC 6803]
gi|1652846|dbj|BAA17764.1| sll1631 [Synechocystis sp. PCC 6803]
Length = 164
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQA 59
+M A+ + G P V ++V G V+ G HAE+ A
Sbjct: 6 PTHEDWMQMAIALAEEA-GNVGEIP-VGAVVVNAMGEVLATGQNRKQRDQNPIAHAEMLA 63
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
++ A T YVTLEPC
Sbjct: 64 IQTACRRLGHWRLNECTLYVTLEPCPMC 91
>gi|217071124|gb|ACJ83922.1| unknown [Medicago truncatula]
Length = 186
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F+ A+ + V +IV + V+ HAEV A+
Sbjct: 29 DRDHKFLRRAVEEAYKGV-DCGDGGPFGAVIVHNDEVVASCHNMVLNFTDPTAHAEVTAI 87
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ + Y + EPC
Sbjct: 88 REACKKLKQIELSDCEIYASCEPCPMC 114
>gi|227894597|ref|ZP_04012402.1| nucleoside deaminase [Lactobacillus ultunensis DSM 16047]
gi|227863588|gb|EEJ71009.1| nucleoside deaminase [Lactobacillus ultunensis DSM 16047]
Length = 174
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S ++M A+ ++ G + +IV DG VIG G
Sbjct: 6 MLSSDDKKKYMQLAMDQAKIAEQQGEV----PIGAVIVDPDGKVIGTGYNRRELDEDSTQ 61
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + + +VTLEPC
Sbjct: 62 HAEMIAIKEACKNLGMWRLIDCSLFVTLEPCPMC 95
>gi|224368847|ref|YP_002603009.1| putative riboflavin biosynthesis protein ribD [Desulfobacterium
autotrophicum HRM2]
gi|223691564|gb|ACN14847.1| putative riboflavin biosynthesis protein ribD [Desulfobacterium
autotrophicum HRM2]
Length = 150
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
D +M AL + V ++V G ++ R HAE+ AL
Sbjct: 3 DLFYMKIALEEAEKAA--RMDEVPVGAVLVDGTGRILARTHNQPITLCDPTAHAEMLALR 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
GE GAT Y T+EPC
Sbjct: 61 MGGEKTGNYRLPGATLYSTIEPCVMC 86
>gi|326802964|ref|YP_004320782.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Aerococcus urinae ACS-120-V-Col10a]
gi|326651114|gb|AEA01297.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Aerococcus urinae ACS-120-V-Col10a]
Length = 162
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
FM AA+ ++ L + + V G VIGRG HAE+QA+ +A
Sbjct: 7 YFMQAAIDQAKKAQDLDEV--PIGAVAVYRGQVIGRGYNLREQSQDATDHAEMQAIRQAN 64
Query: 65 E-----EARGATAYVTLEPCSHYG 83
YVTLEPCS
Sbjct: 65 RYLNNWRLNDVDLYVTLEPCSMCS 88
>gi|293608518|ref|ZP_06690821.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829091|gb|EFF87453.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 161
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+F+ A+ + ++ ++VK+G +I GV HAE+ A+ A
Sbjct: 6 EQFLRKAIELAYKNIEKGGR--PFGAVVVKNGEIIASGVNQILVTNDPTAHAELLAIRAA 63
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + Y + PC
Sbjct: 64 SQVLGSANLEGCSVYASGHPCPMC 87
>gi|239930347|ref|ZP_04687300.1| riboflavin/cytosine deaminase [Streptomyces ghanaensis ATCC 14672]
gi|291438692|ref|ZP_06578082.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
ATCC 14672]
gi|291341587|gb|EFE68543.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis
ATCC 14672]
Length = 377
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/218 (20%), Positives = 80/218 (36%), Gaps = 8/218 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P
Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLS-------LDSKIIKTALLAPVIIVTENDDPVLALA 259
L + R + K++ + V+ T+
Sbjct: 61 LLVNSPERRADRVARGRPEYPLKVTVSGSGDLDPAARFWHTGGEKVLYTTDRGAERARAH 120
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
++ + + + L + RGV L+VEGG V + L D + L + ++
Sbjct: 121 GLAADVVPLGPELDWRRLLEHLHAVRGVRRLMVEGGGLVHTQLLTQGLADELQLVLAPLL 180
Query: 320 IGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIG 356
+G+ P G + + G V + Y
Sbjct: 181 VGDPDAPRLFGPGSYQGGRLRLLETRAVGDVVLMRYEP 218
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQ 58
S+ D +++ A + G SV ++V DG + RG + GG P HAE
Sbjct: 228 SAADHHWLALACDLAERCPPSGTAF---SVGAVVVAADGTELARGHSREGGDPVVHAEEA 284
Query: 59 ALEE---AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRV-SG 113
AL + AT Y +LEPC+ R PCA+ I++ GIRRVV +PD V
Sbjct: 285 ALAKTDPTDPRLATATVYSSLEPCARRASRPAPCARLILDAGIRRVVTAWREPDTFVPGA 344
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
G L G V + E E +
Sbjct: 345 DGSGVLVDGGATVVVLPEHEERAQAPNGH 373
>gi|126657691|ref|ZP_01728845.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Cyanothece sp. CCY0110]
gi|126620908|gb|EAZ91623.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Cyanothece sp. CCY0110]
Length = 163
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+M AL+ + +G V +I+ + G ++ G + HAE+ A
Sbjct: 13 HRHWMKEALKLAEIAANLGDV----PVGAVIINRQGNILAEGYNSKEVNHDPTGHAEIIA 68
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ +A + + T YVTLEPC
Sbjct: 69 IRQASQTLKSWHLEECTLYVTLEPCIMC 96
>gi|327292493|ref|XP_003230945.1| tRNA-specific adenosine deaminase subunit TAD2 [Trichophyton
rubrum CBS 118892]
gi|326466882|gb|EGD92335.1| tRNA-specific adenosine deaminase subunit TAD2 [Trichophyton
rubrum CBS 118892]
Length = 189
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S FM AL+ + + G T V C++V VIG G+ + G HAE
Sbjct: 8 SKHEVFMKMALKMAETALAVGET----PVGCVLVNKDRVIGSGMNDTNKSLNGTRHAEFL 63
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+EEA R YVT+EPC
Sbjct: 64 AIEEALRSHPRSIFRETDLYVTVEPCIMC 92
>gi|300742404|ref|ZP_07072425.1| cytidine/deoxycytidylate deaminase family protein [Rothia
dentocariosa M567]
gi|300381589|gb|EFJ78151.1| cytidine/deoxycytidylate deaminase family protein [Rothia
dentocariosa M567]
Length = 176
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
+ R+M AL + + ++V +G +IG G + HAE+ A
Sbjct: 23 AEHERWMRLALDEGKRAACAGEI--PIGAVVVNAEGEIIGSGHNSREHDHDPTGHAEIHA 80
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQF----IIECGIRRVVVCVDDPDVR 110
+ +A + T VT+EPC + A+ + + V +R
Sbjct: 81 IRQAAQHLKTWRLEECTLVVTVEPCLMCAGAILMARIPTVVMGAWEEKTGAVGSQYDVLR 140
Query: 111 VSGRGLQWLSQKG 123
GL G
Sbjct: 141 DRRLGLDVQVYAG 153
>gi|281202068|gb|EFA76273.1| adenosine deaminase [Polysphondylium pallidum PN500]
Length = 213
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++FM AL ++ + G V C+IV + IVI G HAE++
Sbjct: 26 EKHSKFMKLALNEAKKALDEGEV----PVGCVIVHNDIVIAAGSNKTNIKKNATRHAEIE 81
Query: 59 ALEEAG-----------EEARGATAYVTLEPCSHY 82
AL+ + YVT+EPC
Sbjct: 82 ALDSIYLSENASKFGGDKLLSDCKLYVTVEPCIMC 116
>gi|293375825|ref|ZP_06622095.1| putative guanine deaminase [Turicibacter sanguinis PC909]
gi|292645602|gb|EFF63642.1| putative guanine deaminase [Turicibacter sanguinis PC909]
Length = 154
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++M A+ + V +IVKD VI + HAE+ A+ A
Sbjct: 2 EKYMKMAIEEAENGV-KCKHGGPFGAVIVKDNQVIAKAHNTVVKENDPTCHAEINAIRLA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ + + EPC
Sbjct: 61 SRTLNTFKLNDCLLFTSSEPCPMC 84
>gi|284928847|ref|YP_003421369.1| tRNA-adenosine deaminase [cyanobacterium UCYN-A]
gi|284809306|gb|ADB95011.1| tRNA-adenosine deaminase [cyanobacterium UCYN-A]
Length = 162
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQA 59
++M AL ++ L + V +IV + G +I +G HAE+ A
Sbjct: 6 KIHHQWMKKALSLAQKAENL--EDVPVGAVIVDNYGNLIAQGHNCKKRNNDPTGHAEIVA 63
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ +A ++ YVTLEPC
Sbjct: 64 IRQASQKLQSCYLEKCVLYVTLEPCIMC 91
>gi|167855119|ref|ZP_02477891.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
gi|167853754|gb|EDS24996.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755]
Length = 157
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + V ++V G +IG G HAE+QA+ AG+
Sbjct: 1 MQYALSLADKAEAEGEI--PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQ 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
+ + T YVTLEPC+
Sbjct: 59 QLQNYRLLDTTLYVTLEPCTMC 80
>gi|17231595|ref|NP_488143.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120]
gi|17133238|dbj|BAB75802.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120]
Length = 227
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 13/224 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
V+ R H T+ +A+S D I + K + A SDA+L+G GT+ A
Sbjct: 1 MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEQQIAASDAVLIGAGTLRAYG 60
Query: 205 PEL--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
L R + P+ I++ L+ + + + + ++ T +
Sbjct: 61 TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIRRWLVTTTLGQNFWQ 120
Query: 257 -ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
F + + D + L + LLV GG A+ S + L+D L
Sbjct: 121 GRSEFERIMVFETPTGEIDTITAIEQLTSLQIARLLVLGGGALIASMLELDLIDEFWLTV 180
Query: 316 SQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355
+++G P+P++ L + + +V L Y
Sbjct: 181 CPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVAHEVFLHYR 224
>gi|313902173|ref|ZP_07835582.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
13965]
gi|313467573|gb|EFR63078.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM
13965]
Length = 186
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
+DA FM A +R T V ++V+D ++ G G P
Sbjct: 43 PWDAYFMELAEVVARRS---TCPRRHVGAVLVRDRRILATGYNGAPPGFPHCTEAGCLMQ 99
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G +G+T Y T PC H
Sbjct: 100 DGHCVRTIHAEANAILQAALHGVTVKGSTLYTTATPCLHC 139
>gi|311745177|ref|ZP_07718962.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus
sp. PR1]
gi|311302345|gb|EAZ81919.2| cytidine/deoxycytidylate deaminase family protein [Algoriphagus
sp. PR1]
Length = 147
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M+ AL+ ++ P V +IV +I R HAE+ A+ A
Sbjct: 7 EYYMNEALKQAKIA-FEEGEIP-VGAVIVLKNRIIARAYNQTEKLNDVTAHAEMLAITSA 64
Query: 64 -----GEEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 65 ANYMGAKYLNDCKLYVTLEPCTMC 88
>gi|190347088|gb|EDK39300.2| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
6260]
Length = 611
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE-- 61
+ FM AL + G T T +V ++V +G V+ G + G HAE ALE
Sbjct: 454 ASHRPFMELALSEAEK-CGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKY 512
Query: 62 ----EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ E G Y T+EPCS + PC Q I++ I+ V V +PD V
Sbjct: 513 FKASNSTEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDN 570
>gi|146416095|ref|XP_001484017.1| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC
6260]
Length = 611
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE-- 61
+ FM AL + G T T +V ++V +G V+ G + G HAE ALE
Sbjct: 454 ASHRPFMELALSEAEK-CGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKY 512
Query: 62 ----EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ E G Y T+EPCS + PC Q I++ I+ V V +PD V
Sbjct: 513 FKASNSTEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDN 570
>gi|312279157|gb|ADQ63814.1| Cytidine/deoxycytidylate deaminase family protein, putative
[Streptococcus thermophilus ND03]
Length = 172
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EIFMSEALKEAQKSLDKAEI--PIGCVIVKDKEIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|282879130|ref|ZP_06287889.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella buccalis ATCC 35310]
gi|281298772|gb|EFA91182.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella buccalis ATCC 35310]
Length = 181
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
D +FM AL + G + +I G +I R HAE+
Sbjct: 39 KQDEQFMQKALAEAHAAYDEGEV----PIGAVITCQGRIIARAHNQTETLNDVTAHAEML 94
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ A + G T YVT+EPC
Sbjct: 95 AITAAAAQLGGKYLPQCTLYVTVEPCPMC 123
>gi|330933338|ref|XP_003304140.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
gi|311319472|gb|EFQ87774.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1]
Length = 293
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
++ FM A+ + + S V C+ VKDG +IGRG+ G HAE A+
Sbjct: 66 AYHEGFMREAIAMAELAL--KSDETPVGCVFVKDGHIIGRGMNETNRTLNGTRHAEFVAI 123
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 124 AGILSKHPISILNETDLYVTVEPCVMC 150
>gi|257470169|ref|ZP_05634261.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
gi|317064387|ref|ZP_07928872.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
gi|313690063|gb|EFS26898.1| deoxycytidylate deaminase [Fusobacterium ulcerans ATCC 49185]
Length = 163
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 26/102 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT-------------AYG 50
+D FM AL ++ N V IV + +IG G
Sbjct: 8 EWDEYFMGVALLSAKRSK---DPNTQVGACIVNEERRIIGVGYNGLPKGCSDDEFPWERE 64
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + T YV L PC
Sbjct: 65 GEFLDTKYPFVCHAELNAILNSTKTLKNCTLYVALFPCHECS 106
>gi|149237721|ref|XP_001524737.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
gi|146451334|gb|EDK45590.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239]
Length = 622
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE---- 62
++M AL +R G T T +V C++V DG VI G + G HAE ALE+
Sbjct: 456 RKYMEMALDEARK-CGETQTQFNVGCVLVLDGEVISTGHSRELEGNTHAEQCALEKYFAK 514
Query: 63 ---AGEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-GL 116
+ G Y T+EPCS G P + + I V V +PDV V
Sbjct: 515 NGGIRDVPLGTELYTTMEPCSLRLSGNLPCVDRILALPNITACFVGVMEPDVFVKNNLSY 574
Query: 117 QWLSQKGIIVDR 128
+ L GI
Sbjct: 575 KKLKDAGIEYIH 586
>gi|75911133|ref|YP_325429.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC
29413]
gi|75704858|gb|ABA24534.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena
variabilis ATCC 29413]
Length = 143
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D FM A++ + + ++VKDG ++GRG HAE+ L
Sbjct: 1 MDE-FMQVAIQEATQGRQEGGI--PIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG RG T Y TL PC
Sbjct: 58 NAGRIGSYRGTTLYSTLMPCYLC 80
>gi|160885114|ref|ZP_02066117.1| hypothetical protein BACOVA_03112 [Bacteroides ovatus ATCC 8483]
gi|237718265|ref|ZP_04548746.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260174220|ref|ZP_05760632.1| putative cytosine/adenosine deaminase [Bacteroides sp. D2]
gi|293368778|ref|ZP_06615382.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CMC 3f]
gi|299147814|ref|ZP_07040877.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_23]
gi|315922489|ref|ZP_07918729.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156109464|gb|EDO11209.1| hypothetical protein BACOVA_03112 [Bacteroides ovatus ATCC 8483]
gi|229452449|gb|EEO58240.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292636083|gb|EFF54571.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CMC 3f]
gi|298513997|gb|EFI37883.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_23]
gi|313696364|gb|EFS33199.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 145
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 21/141 (14%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL + G V ++V +I R T HAE+QA
Sbjct: 3 DDIYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAEMQA 58
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 59 ITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQKY 112
Query: 115 GLQWLSQKGIIVDRMMESEGK 135
L K ++V +M E
Sbjct: 113 AGSALHPKTVVVKGVMADECA 133
>gi|302872965|ref|YP_003841598.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
gi|307686520|ref|ZP_07628966.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
cellulovorans 743B]
gi|302575822|gb|ADL49834.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
Length = 147
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
F+ A+ ++ G V +I+KD VI T HAE+ A++ A
Sbjct: 5 FLKIAIEEAKKARELGEV----PVGAVIIKDDKVIAAAHNLKETKKEVTAHAELLAIKMA 60
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 61 SEILDNWRLNDCEIYVTLEPCAMC 84
>gi|254282421|ref|ZP_04957389.1| guanine deaminase [gamma proteobacterium NOR51-B]
gi|219678624|gb|EED34973.1| guanine deaminase [gamma proteobacterium NOR51-B]
Length = 155
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
F+ A++ + ++ + +IVK+ +I HAEV+A+ AGE
Sbjct: 5 FLHRAIQLASDNI-DSGKGGPFGAVIVKNNEMIAESANRVLAHSDPTAHAEVEAIRSAGE 63
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G T Y + EPC
Sbjct: 64 ALGTFDLSGCTLYASCEPCPMC 85
>gi|166368572|ref|YP_001660845.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
NIES-843]
gi|166090945|dbj|BAG05653.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa
NIES-843]
Length = 162
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
++M AL + G V +IV K G +I +G + HAE+
Sbjct: 14 EKHRQWMQLALNLAATAGDRGDV----PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEI 69
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + T YVTLEPC
Sbjct: 70 LAIRAASQVLGNWHLNDCTLYVTLEPCPMC 99
>gi|145641906|ref|ZP_01797480.1| preprotein translocase subunit SecA [Haemophilus influenzae
R3021]
gi|145273385|gb|EDK13257.1| preprotein translocase subunit SecA [Haemophilus influenzae
22.4-21]
Length = 147
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL + +G V ++V D G +IG G HAE+ AL
Sbjct: 1 MRYALTLADKAEALGEI----PVGAVLVDDSGNIIGEGWNLSIVQNDPTAHAEIIALRNG 56
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + T YVTLEPC+
Sbjct: 57 AKNIQNYRLLNTTLYVTLEPCTMC 80
>gi|309775004|ref|ZP_07670019.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 3_1_53]
gi|308917222|gb|EFP62947.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 3_1_53]
Length = 162
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
+M AA++ + + C+IVKD +I RG HAE+ A+++A
Sbjct: 14 EDYMRAAIKEAVKA--NMKDEVPIGCVIVKDDKIIARGHNLRESKQQSINHAEIIAIQKA 71
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ YVTLEPC
Sbjct: 72 CKKIGSWRLEDCDLYVTLEPCCMC 95
>gi|242041093|ref|XP_002467941.1| hypothetical protein SORBIDRAFT_01g036850 [Sorghum bicolor]
gi|241921795|gb|EER94939.1| hypothetical protein SORBIDRAFT_01g036850 [Sorghum bicolor]
Length = 183
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
FM AL +++ + V C+IV+DG VI G HAE++A++
Sbjct: 5 FMEQALEQAKFALDNLEV--PVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
+ E+ G YVT EPC
Sbjct: 63 EWQSMGLDQTQVAEKFAGCDLYVTCEPCIMC 93
>gi|269129124|ref|YP_003302494.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
DSM 43183]
gi|268314082|gb|ACZ00457.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
DSM 43183]
Length = 168
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL +R + G V +I+ G VI G HAEV AL A
Sbjct: 24 MRLALDQARLAMESGDV----PVGAVILDSGGRVIATGRNEREQTADPTAHAEVVALRSA 79
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 80 AARLGSWRLEGCTLVVTLEPCTMC 103
>gi|294657495|ref|XP_459803.2| DEHA2E11374p [Debaryomyces hansenii CBS767]
gi|199432736|emb|CAG88042.2| DEHA2E11374p [Debaryomyces hansenii]
Length = 582
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
+S ++M AL + G T T +V ++V +G V+ G + G HAE ALE+
Sbjct: 430 TSPHRKYMELALEMANK-CGETQTQFNVGAVLVNNGEVLATGHSRELPGNTHAEQCALEK 488
Query: 63 AGEE------ARGATAYVTLEPC 79
E+ G Y T+EPC
Sbjct: 489 YFEQTGKREVPAGTEIYTTMEPC 511
>gi|220907233|ref|YP_002482544.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
gi|219863844|gb|ACL44183.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
Length = 144
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+FM AA+ +R + + ++VK+G +IGRG G P HAE+ L++AG
Sbjct: 3 QFMQAAIAEARTGLQEGGI--PIGSVLVKNGEIIGRGHNQRVQQGNPIIHAEIDCLQQAG 60
Query: 65 E--EARGATAYVTLEPCSHY 82
+ T Y TL PC
Sbjct: 61 RIGRYQDTTLYSTLMPCYLC 80
>gi|16078382|ref|NP_389200.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
gi|221309178|ref|ZP_03591025.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
gi|221313504|ref|ZP_03595309.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221318426|ref|ZP_03599720.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322700|ref|ZP_03603994.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. SMY]
gi|321315069|ref|YP_004207356.1| guanine deaminase [Bacillus subtilis BSn5]
gi|23396605|sp|O34598|GUAD_BACSU RecName: Full=Guanine deaminase; Short=GDEase; Short=Guanase;
Short=Guanine aminase; AltName: Full=Guanine
aminohydrolase; Short=GAH
gi|2632037|emb|CAA05596.1| YkoA [Bacillus subtilis]
gi|2633671|emb|CAB13174.1| guanine deaminase [Bacillus subtilis subsp. subtilis str. 168]
gi|291483843|dbj|BAI84918.1| guanine deaminase [Bacillus subtilis subsp. natto BEST195]
gi|320021343|gb|ADV96329.1| guanine deaminase [Bacillus subtilis BSn5]
Length = 156
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V +IVKDG +I G T+ HAEV A+ +
Sbjct: 3 HETFLKRAVTLACEGV-NAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 62 ACKVLGAYQLDDCILYTSCEPCPMC 86
>gi|229845957|ref|ZP_04466069.1| hypothetical protein CGSHi7P49H1_03883 [Haemophilus influenzae
7P49H1]
gi|229810961|gb|EEP46678.1| hypothetical protein CGSHi7P49H1_03883 [Haemophilus influenzae
7P49H1]
Length = 159
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCPHAEVQALEEA 63
M AL + +G V ++V D +IG G HAE+ AL
Sbjct: 1 MRYALELADKAEALGEI----PVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNG 56
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + +T YVTLEPC+
Sbjct: 57 AKNIQNYRLLNSTLYVTLEPCTMC 80
>gi|113461754|ref|YP_719823.1| tRNA-adenosine deaminase [Haemophilus somnus 129PT]
gi|112823797|gb|ABI25886.1| tRNA-adenosine deaminase [Haemophilus somnus 129PT]
Length = 158
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEE 62
M AL + +G V ++V K G ++ G HAE+ AL +
Sbjct: 1 MMRYALSLADKAEALGEI----PVGAVLVDKQGDILAEGWNLSIIHNDPTAHAEIIALRQ 56
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG++ + T YVTLEPC+
Sbjct: 57 AGQKLQNYRLLDTTLYVTLEPCTMC 81
>gi|82791814|gb|ABB90836.1| putative bifunctional enzyme deaminase/reductase [Streptomyces
davawensis]
Length = 375
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 3/143 (2%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
P+++ + L +K T V + A + +
Sbjct: 77 HPEYPLKVTVSGSGDLDPAAKFWHTGGEKVVYTTDKGARTARAAGLAADVVALGADLDWR 136
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
LLT L RGV L+VEGG + + L D + L + + +G+ P G
Sbjct: 137 R--LLTDLHARGVHRLMVEGGGTIHTQLLQEGLADELQLVLAPLFVGDPSAPRLFGPGAY 194
Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356
V V + Y
Sbjct: 195 QAGRLRLVESRRIQDVVLMRYEP 217
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---HAEVQAL 60
+ D ++ A + + T SV ++V DG + RG + G HAE AL
Sbjct: 228 AADHHWLRLACELAEL-CPPSETAFSVGAVVVAADGTELARG-HSREGTDPVVHAEEAAL 285
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVS-GRG 115
+ AT Y +LEPC+H P PCA+ I++ G+RRVV +PD V G
Sbjct: 286 AKIDPEDPRLPSATVYSSLEPCAHRSSRPAPCARLILDAGVRRVVTAWREPDTFVVAADG 345
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYL 142
L+ G+ V + E +
Sbjct: 346 TGLLTAAGVDVLELPEYADRAKAPNQH 372
>gi|28895070|ref|NP_801420.1| hypothetical protein SPs0158 [Streptococcus pyogenes SSI-1]
gi|28810315|dbj|BAC63253.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 160
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE- 65
M AL+ + + + C+IVKDG +IGRG A HAE+ A+ EA
Sbjct: 1 MQEALKEAEKSLQKAEI--PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAH 58
Query: 66 ----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 59 EGNWRLLDTTLFVTIEPCVMCS 80
>gi|239833547|ref|ZP_04681875.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
gi|239821610|gb|EEQ93179.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301]
Length = 173
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV G +I R HAEV A+ EAG
Sbjct: 32 MEIALEEA-RAAGARGEVP-IGAVIVHQGTIIARAGNRTRELNDVTAHAEVLAIREAGET 89
Query: 65 ---EEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 90 LQSERLVGCDLYVTLEPCAMC 110
>gi|221195061|ref|ZP_03568117.1| tRNA-specific adenosine deaminase [Atopobium rimae ATCC 49626]
gi|221184964|gb|EEE17355.1| tRNA-specific adenosine deaminase [Atopobium rimae ATCC 49626]
Length = 198
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D ++M AL + G + ++V DG VI HAE
Sbjct: 42 ARDEKYMRLALSEAAAAAAEGEV----PIGAVVVCDGEVIASAHNRREVDNSPSAHAEFL 97
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+EEA G T YVTLEPC
Sbjct: 98 AMEEASRVLKRWRLTGCTVYVTLEPCLMC 126
>gi|311898175|dbj|BAJ30583.1| putative diaminohydroxyphosphoribosylamino- pyrimidine deaminase
[Kitasatospora setae KM-6054]
Length = 153
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-GGCPHAE 56
M S D R+M A+ S+ + T SV +IV DG V+ G + HAE
Sbjct: 1 MSSSDPAADLRWMRRAIELSKR-CPPSRTAFSVGAVIVGADGEVLAEGHSREVDAVNHAE 59
Query: 57 VQALEE--AGE-EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRV- 111
AL + AG+ R AT Y TLEPC R PCA+ I+ G+ RVVV +P + V
Sbjct: 60 EAALGKLPAGDPRLRAATVYSTLEPCGQRASRPHPCAELIVAAGVPRVVVAWREPSLFVA 119
Query: 112 SGRGLQWLSQKGIIV 126
+ +G L+ G+ V
Sbjct: 120 ACQGTALLTAAGVEV 134
>gi|261367117|ref|ZP_05980000.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
15176]
gi|282571240|gb|EFB76775.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM
15176]
Length = 153
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D + M AL +R +G V +I KDG ++ R HAE+ A+
Sbjct: 3 DEQLMQVALEEARIAAALGEV----PVGAVIAKDGEIVARAHNLRERGKNATYHAELLAI 58
Query: 61 EEAGEEARG-----ATAYVTLEPCSHYG 83
+ A + G +VTLEPC
Sbjct: 59 DAACKALGGWRLWQCELFVTLEPCPMCS 86
>gi|149194180|ref|ZP_01871278.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
TB-2]
gi|149136133|gb|EDM24611.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus
TB-2]
Length = 326
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 64/369 (17%), Positives = 114/369 (30%), Gaps = 80/369 (21%)
Query: 8 ARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCPHAEVQALEEA 63
R+ + A+ + + LT NP+V +V V + G PHAEV L +A
Sbjct: 4 ERWDVLLDLAINEAWKYQFLTYPNPAVGASLVIKNKVFVS--AHKKAGSPHAEVNVLWDA 61
Query: 64 ------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
A +VTLEPCSH G++P CA + +
Sbjct: 62 FSFFHKTPKFTDSFEIHEYLIKHHNNFFNEAEMFVTLEPCSHIGKTPSCANLLKVLKPKS 121
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V + + DP + G++ L GI V+ + + + ++ +K L
Sbjct: 122 VTIGIKDPI-KSHSGGVEILKNAGIEVNLLNDKRCFDLIEPFIKWSKDKFIFFKL----- 175
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ G G + ++ + D +++G TV D P L R
Sbjct: 176 AQSFNGAITGGYISSEDSLNWVHKVRDKI--DLLVIGGNTVRIDRPTLDARRVN------ 227
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
AP I++ + K N L+++
Sbjct: 228 ---------------------GKAPDILIYSKNKNFDKNIPLFKVKNRKVFIEDSLEEIN 266
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+++EGG + VD + + + LE +F
Sbjct: 267 DYKF------IMIEGGENLYKKL--KDFVDWKVFIVTPKIFDR-------INYKLEDSFK 311
Query: 340 CVRRDYFGS 348
+ +
Sbjct: 312 ILHVEKRDD 320
>gi|20089036|ref|NP_615111.1| dCMP deaminase [Methanosarcina acetivorans C2A]
gi|19913893|gb|AAM03591.1| dCMP deaminase [Methanosarcina acetivorans C2A]
Length = 150
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S D F+ A ++ L + +V +IV+D ++ G
Sbjct: 6 SLDEYFLEIAFVVAKRATCLRN---NVGAVIVRDKRILSTGYNGAPSGLEHCLDIGCIRE 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 63 LEKIPSGTRHEKCRAVHAEQNAIIQAAIHGVSISGATIYCTHQPCILCAKM 113
>gi|32477503|ref|NP_870497.1| cytosine deaminase [Rhodopirellula baltica SH 1]
gi|32448057|emb|CAD77574.1| cytosine deaminase [Rhodopirellula baltica SH 1]
gi|327542170|gb|EGF28663.1| CMP/dCMP deaminase zinc-binding protein [Rhodopirellula baltica
WH47]
Length = 159
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +M A+ ++ V +IV+ G I HAE+ A+
Sbjct: 7 DIDRHWMQRAIEMAQSAALE--DEVPVGAIIVRSGTAIAAAANQREALHDPTAHAEMIAI 64
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+A T YVTLEPC
Sbjct: 65 TQAAASIENWRLEQTTLYVTLEPCLMC 91
>gi|54025279|ref|YP_119521.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
10152]
gi|54016787|dbj|BAD58157.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM
10152]
Length = 228
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 4/147 (2%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ + + T PV+ T A + D
Sbjct: 80 HPLKVTVTATGDLDPAAKFWHHGTEDHRPVVYTTSAGHEKTAQLLDGLADVVDLGPAIDF 139
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
LL L GRGV L+VEGG + +F++ RL D ++L V+G+ P L
Sbjct: 140 GALLDDLGGRGVRRLMVEGGGHIHTAFLSHRLADELLLAIGPTVVGQANAPRFLHPAAFP 199
Query: 336 ----KNFMCVRRDYFGSDVCLEYIGKN 358
+ G L Y+ K
Sbjct: 200 GGPHRRMRLTDVTRLGDVAVLRYLPKE 226
>gi|67921574|ref|ZP_00515092.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii
WH 8501]
gi|67856686|gb|EAM51927.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii
WH 8501]
Length = 224
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 4/165 (2%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
G + + L R + P+ I++ K++ + + + +I E
Sbjct: 57 AYGTTLTVRNTELLAQRKQENKPSQPINIVVSASGKIADNLRFFSQPVPHWLITTEEGTK 116
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
+ + + +L L G+ +L + GG + S + L+D L
Sbjct: 117 NDTSNFEKVLTFSPEETGKINLVAAFKHLKEIGLNNLAILGGGELVASCLEENLIDEFCL 176
Query: 314 YRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
++G P+P+E + + + ++ L Y
Sbjct: 177 TLCPYILGGKTAPTPVEGKGFLSKHSQKLELLSLEQIEQEIFLHY 221
>gi|237714907|ref|ZP_04545388.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406825|ref|ZP_06083374.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
gi|298483658|ref|ZP_07001833.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
D22]
gi|229445232|gb|EEO51023.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355528|gb|EEZ04619.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
gi|295084706|emb|CBK66229.1| Cytosine/adenosine deaminases [Bacteroides xylanisolvens XB1A]
gi|298270228|gb|EFI11814.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
D22]
Length = 145
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 21/141 (14%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL + G V ++V +I R T HAE+QA
Sbjct: 3 DDIYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAEMQA 58
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 59 ITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQKY 112
Query: 115 GLQWLSQKGIIVDRMMESEGK 135
L K ++V +M E
Sbjct: 113 AGSALHPKTVVVKGIMADECA 133
>gi|224087290|ref|XP_002308113.1| predicted protein [Populus trichocarpa]
gi|222854089|gb|EEE91636.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
FM A+ + + S V C+IV+DG VI G HAE++A++
Sbjct: 16 FMELAIEQAEDALN--SLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLE 73
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
E E+ + YVT EPC
Sbjct: 74 QWQKIGLSVSEVAEKISTCSLYVTCEPCIMC 104
>gi|327400817|ref|YP_004341656.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
gi|327316325|gb|AEA46941.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Archaeoglobus veneficus SNP6]
Length = 226
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 8/219 (3%)
Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203
R H+ + +A S D I + I+ +V LRA+SDAI+VGIGTVL+D
Sbjct: 1 MNSIMRPHVFINVAASADGRISDESRRQIRISCEEDMQRVDRLRAESDAIVVGIGTVLSD 60
Query: 204 DPELTCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
DP LT + + +P+R+++D + L+++++ V + D+
Sbjct: 61 DPRLTVKSQALREERVKNGRTPNPLRVVVDSRARTPLNARVLDGEAETLVAVSDLADEER 120
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+A K ++ + + DL+ L+ L GV ++VEGGA + HS I LVD I++Y
Sbjct: 121 VAALREKASVFVAGQEKVDLRALMEYLYSIGVRRVMVEGGARLNHSLIAEGLVDEIMVYY 180
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
++IG G + VR GS V +
Sbjct: 181 GGMIIGNGPCIADGPSFKPPVPLELVRVSRLGSGVLAVW 219
>gi|325273807|ref|ZP_08139995.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
gi|324101066|gb|EGB98724.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51]
Length = 159
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D +M AL + +G V ++V+ G VIG+G HAE+
Sbjct: 9 SRDQEYMRLALSLAAEGAALGEV----PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMV 64
Query: 59 -----ALEEAGEEARGATAYVTLEPCSHY 82
A + G+T YVTLEPCS
Sbjct: 65 AIRAAAKAASNYRLPGSTLYVTLEPCSMC 93
>gi|256832227|ref|YP_003160954.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
gi|256685758|gb|ACV08651.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
Length = 283
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 10/201 (4%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58
MP+S + A+ + S N V +I + V+ G + HAE
Sbjct: 1 MPISVGEVEHAHAKKAIEEALKS----SDNARVGAVIARGETVLATGYKSEIDKLHAEQI 56
Query: 59 ALEEA---GEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
AL +A G + +GAT Y T+EPC + PCA+ + E GI V + DP+ +V
Sbjct: 57 ALHKAEMQGVDVKGATLYTTMEPCANSRTSRVPCAELVAEAGIVEVHIGEYDPNPQVYRL 116
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174
G + L +GI + + K A + + D
Sbjct: 117 GWKHLRDRGIGLRDFPKDLRKQAHEAGTNFTRVFTNGFGVSAGAKFDFTQNGGRFTIRLD 176
Query: 175 TGFISKNQVHLLRAQSDAILV 195
S +
Sbjct: 177 EEKDSPTWETRWTNCGANAIY 197
>gi|330957624|gb|EGH57884.1| cytosine deaminase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 145
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AA+ +R + + +IV DG +IGRG G P H E+ ALE AG
Sbjct: 4 FMQAAIDEARLGLDEGGI--PIGSVIVHDGKIIGRGHNRRVQEGSPTRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYRDAVLYTTLSPCAMCS 83
>gi|302545542|ref|ZP_07297884.1| riboflavin biosynthesis, RibD domain-containing protein
[Streptomyces hygroscopicus ATCC 53653]
gi|302463160|gb|EFL26253.1| riboflavin biosynthesis, RibD domain-containing protein
[Streptomyces himastatinicus ATCC 53653]
Length = 238
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 100/241 (41%), Gaps = 17/241 (7%)
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
+ E R ++ K A + D I A S IT S+ +VH LRA
Sbjct: 1 MHISELVGTDEWHTAEGRPYVVYKYAATLDGRIAAADSTSQWITSAESRTEVHALRAACQ 60
Query: 192 AILVGIGTVLADDPELTCRLNGLQEH---------SPMRIILDPHFKLSLDSKIIKTALL 242
A +VG GT AD+P L R P R+I+D + + D++++ A
Sbjct: 61 ATVVGSGTQQADNPHLAVRSAKDDPKLKVAVPVDEQPWRVIVDSNARTPADARVLDDA-A 119
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+I V ++ D + DL KLL L GRGV + +EGG +A SF
Sbjct: 120 PTLIAVADDVDATHLEGIATVVRLPRAKEGLDLGKLLGELDGRGVRGMFLEGGPTLAASF 179
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357
++S LVD II Y + V+G G S L+ G +E + G DV L +
Sbjct: 180 VSSGLVDRIIAYIAPAVLGRG--KSALQGGTIESMDDILRCELLDVSRSGPDVRLVARPR 237
Query: 358 N 358
Sbjct: 238 R 238
>gi|118496774|ref|YP_897824.1| zinc-binding protein [Francisella tularensis subsp. novicida
U112]
gi|118422680|gb|ABK89070.1| zinc-binding protein [Francisella novicida U112]
Length = 153
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+DG +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDGQIIAQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAE+ L A + YVTLEPC
Sbjct: 57 HAEILVLRSAALKLDNYRLVNTKLYVTLEPCIMC 90
>gi|319948958|ref|ZP_08023063.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
gi|319437396|gb|EFV92411.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4]
Length = 88
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66
++ A+ SR +G+++ NP V +++ G V+GRG T G HAEV AL+EAG+
Sbjct: 25 LAEAIALSRAALGVSTPNPPVGAVVLDAAGGVVGRGATEAPGGRHAEVVALDEAGDR 81
>gi|28377565|ref|NP_784457.1| cytosine/adenosine deaminase [Lactobacillus plantarum WCFS1]
gi|254555738|ref|YP_003062155.1| cytosine/adenosine deaminase [Lactobacillus plantarum JDM1]
gi|300769759|ref|ZP_07079641.1| possible guanine deaminase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|28270397|emb|CAD63300.1| cytosine/adenosine deaminase [Lactobacillus plantarum WCFS1]
gi|254044665|gb|ACT61458.1| cytosine/adenosine deaminase [Lactobacillus plantarum JDM1]
gi|300492667|gb|EFK27853.1| possible guanine deaminase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 168
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61
+M AL +R +G + +IV G +IGRG HAE+ A++
Sbjct: 7 EDWMQEALHEARMAYLIGEV----PIGAVIVHQGEIIGRGHNLREHGQDATMHAEIIAIQ 62
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
EA E YVTLEPC
Sbjct: 63 EACEYLHSWRLADCQLYVTLEPCLMCS 89
>gi|209518682|ref|ZP_03267499.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. H160]
gi|209500881|gb|EEA00920.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. H160]
Length = 230
Score = 74.6 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
VS D RFM AL + G + V ++V+ VI G G HAE+
Sbjct: 55 VSERDLRFM--ALAQAAAEEGRAAGEVPVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMV 112
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + G YVTLEPC
Sbjct: 113 ALRAAAQSLENYRLPGCELYVTLEPCLMC 141
>gi|84497975|ref|ZP_00996772.1| putative deaminase [Janibacter sp. HTCC2649]
gi|84381475|gb|EAP97358.1| putative deaminase [Janibacter sp. HTCC2649]
Length = 158
Score = 74.6 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ D +++ A+ + +V + ++V+ G VIG G HAEV AL
Sbjct: 2 TDDQKWLDRAIDLAIANV--SGGGGPFGAVVVRGGDVIGEGTNRVTLDLDPTAHAEVVAL 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A GAT Y + EPC
Sbjct: 60 RNACREVGDFSLPGATVYASCEPCPLC 86
>gi|226528904|ref|NP_001152082.1| tRNA-specific adenosine deaminase [Zea mays]
gi|195624114|gb|ACG33887.1| tRNA-specific adenosine deaminase [Zea mays]
gi|195652465|gb|ACG45700.1| tRNA-specific adenosine deaminase [Zea mays]
Length = 183
Score = 74.6 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
FM AL +++ + V C+IV+DG VI G HAE++A++
Sbjct: 5 FMELALEQAKFALDNLEV--PVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
+ E+ G YVT EPC
Sbjct: 63 EWQSMGLDQPQVAEKFAGCDLYVTCEPCIMC 93
>gi|238014692|gb|ACR38381.1| unknown [Zea mays]
Length = 183
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
FM AL +++ + V C+IV+DG VI G HAE++A++
Sbjct: 5 FMELALEQAKFALDNLEV--PVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDVLLR 62
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
+ E+ G YVT EPC
Sbjct: 63 EWQSMGLDQPQVAEKFAGCDLYVTCEPCIMC 93
>gi|119510845|ref|ZP_01629970.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414]
gi|119464524|gb|EAW45436.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414]
Length = 242
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 4/137 (2%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
++ + + F + I D L L
Sbjct: 103 PIERWLLTTTMGAGSWQRREQTLHSTGLTPARECPPKFEQMIIFDTPTGKVDTSAALQHL 162
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNF 338
+T L + GG + S + L+D + L +++G P+P+E
Sbjct: 163 ASLHITRLAILGGGELVASMLQLDLIDELWLTVCPLILGGASAPTPVEGVGFLSQFAPKL 222
Query: 339 MCVRRDYFGSDVCLEYI 355
+ +V L Y
Sbjct: 223 ELLEVHQVEQEVFLHYR 239
>gi|317122494|ref|YP_004102497.1| CMP/dCMP deaminase zinc-binding protein [Thermaerobacter
marianensis DSM 12885]
gi|315592474|gb|ADU51770.1| CMP/dCMP deaminase zinc-binding protein [Thermaerobacter
marianensis DSM 12885]
Length = 171
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
S+DA FM A ++ T V ++V+D ++ G G P
Sbjct: 24 SWDAYFMELAEVVAKRS---TCPRRHVGAVLVRDRRILATGYNGAPPGFPHCTDEGCLMQ 80
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G RG+T Y T PC H
Sbjct: 81 DGHCVRTIHAEANAILQAALHGVTVRGSTLYTTATPCLHC 120
>gi|219848143|ref|YP_002462576.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
aggregans DSM 9485]
gi|219542402|gb|ACL24140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus
aggregans DSM 9485]
Length = 222
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 15/215 (6%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A + D + S I+ S + H LRA SDAI+VG+GTVL DDP LT
Sbjct: 4 PRVTLSFAQTLDGRVAAVDGSSQWISSADSLHFCHSLRAASDAIMVGVGTVLRDDPRLTV 63
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV------LALAFRKK 263
RL P+R+I+D + + +I+ ++ P L
Sbjct: 64 RLVE--GCDPVRVIVDSTLRTPPTAAVIRDGAARGTVLACTAAAPSERRTVLRELGATIL 121
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ DL LL L RG+ S++VEGGA + + + LVD++ + + +++G G
Sbjct: 122 TLPATPDGKVDLVALLASLAERGIASIMVEGGACLITGLLRAHLVDAVAITIAPLILGAG 181
Query: 324 GIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353
P+ + + + VR +G DV LE
Sbjct: 182 --PAAVGDLGITTLAQAIKLGDVRWTTYGVDVVLE 214
>gi|332528366|ref|ZP_08404366.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
gi|332042237|gb|EGI78563.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624]
Length = 375
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 21/95 (22%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDG------IVIGRGVT----AYGGC 52
+ D +M AL + G V ++V V+ +
Sbjct: 2 NTDLEYMRMALDQAYRAAQAGEV----PVGAVLVHQDPHGGADRVLATAHNTPIADHDPT 57
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+QAL AG T YVTLEPC
Sbjct: 58 AHAEMQALRAAGSVLGNYRLDDCTLYVTLEPCPMC 92
>gi|307706899|ref|ZP_07643700.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
gi|307617691|gb|EFN96857.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321]
Length = 155
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVK+G +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKEGEIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|304315578|ref|YP_003850723.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777080|gb|ADL67639.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 143
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M A+ + + G V ++VKDGI+IG+G T HAE+ A+++A
Sbjct: 1 MKCAIDEAVLSLKLGE----MPVGAVVVKDGIIIGKGHNLKETEKDATQHAEINAIKDAC 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ A+ YVTLEPC
Sbjct: 57 KNIGDWRLNDASLYVTLEPCPMC 79
>gi|311898589|dbj|BAJ30997.1| putative truncated riboflavin-specific deaminase/reductase
[Kitasatospora setae KM-6054]
Length = 100
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGY 333
+L L RGV L+VEGG + F++ L D I L + +++G+ G P + G
Sbjct: 13 MLEDLAARGVQRLMVEGGGQIHTQFLSLGLADEIHLAVAPLLVGDAGAPRFVYPAEFPGG 72
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
+ + G V L Y K
Sbjct: 73 STHRMKLLGTETVGDVVLLRYAPKE 97
>gi|228472860|ref|ZP_04057617.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
gingivalis ATCC 33624]
gi|228275442|gb|EEK14219.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
gingivalis ATCC 33624]
Length = 145
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M +S D FM AL+ ++ G V +I +I + H
Sbjct: 1 MILS--DTYFMQKALQEAQIAFEQGEV----PVGAVITIGERIIAKAHNLTEKLTDVTAH 54
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ T YVTLEPC
Sbjct: 55 AEMQAITAASEYLGGKYLMDCTLYVTLEPCVMC 87
>gi|306826204|ref|ZP_07459538.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304431480|gb|EFM34462.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 155
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKD +IGRG A HAE+ A+E A
Sbjct: 9 EAFMREALREAEIALEHDEI--PIGCVIVKDREIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NVSEESWRLLDCTLFVTIEPCVMCS 91
>gi|269926111|ref|YP_003322734.1| bifunctional deaminase-reductase domain protein [Thermobaculum
terrenum ATCC BAA-798]
gi|269789771|gb|ACZ41912.1| bifunctional deaminase-reductase domain protein [Thermobaculum
terrenum ATCC BAA-798]
Length = 241
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 8/234 (3%)
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
E ++ ++ + + + D + PI + LR
Sbjct: 5 YPCLRECRLTDVYTDLWLPIDEPYVYMNMVTTVDGRA-TIDGKAYPIGDDADHYLMRRLR 63
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-----KIIKTALL 242
+ +DA++VG GT + + + E +P + L
Sbjct: 64 SFADAVIVGAGTARNERVSVDIPEDMQHERVAAGKSANPRLVIVSGQGEVKLYKSLMELG 123
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+I+ ++ +L L+ + + + + T+ G+T LL+EGG + +F
Sbjct: 124 KENLIIFGSNKSLLDLSDYASVHVSSHPYPKPEEVISTLRNQYGLTRLLLEGGPKLNAAF 183
Query: 303 INSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
I S V+ + + VIG+ G+P P ++ V S++ Y
Sbjct: 184 IESGSVNELFWTIAPKVIGKEGLPMVMPTSNLPVKTQLQLVSLYVSDSEIFTRY 237
>gi|188588285|ref|YP_001922596.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498566|gb|ACD51702.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str.
Alaska E43]
Length = 157
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54
M S D F+ A ++ G + +IVKD IVI + T H
Sbjct: 1 MEEKSMD--FLDIAKEEAKKAMSKGEV----PIGAVIVKDNIVISKAHNLKETLKDATAH 54
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ EA + G YVTLEPC+
Sbjct: 55 AEILAIREASKFLDDWRLNGTEMYVTLEPCTMC 87
>gi|300788900|ref|YP_003769191.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
gi|299798414|gb|ADJ48789.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
Length = 363
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEEA 63
D + + A+ + S V +I DG V+ G + G P HAE AL +
Sbjct: 222 DVQRLKEAIALA--AECPPSHTFRVGAVITDADGEVVATG-HSGEGDPGNHAEEAALAKC 278
Query: 64 G--EEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT Y +LEPCSH C Q I++ GI RVV +P V V RG + L
Sbjct: 279 GGDPRLAGATMYSSLEPCSHRSSHPRSCTQLILDAGIPRVVFAWREPPVFVDARGTELLR 338
Query: 121 QKGIIV 126
Q G V
Sbjct: 339 QAGRHV 344
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ +LLVEGG + F+ L D + L + +G+ P + G + + +
Sbjct: 143 RGIENLLVEGGGGIHTRFLTEGLADELRLAIAPFFVGQPDAPRFVGPGLYPRPLVLTAAN 202
Query: 345 YFGSDVCLEYI 355
LEY
Sbjct: 203 ELQGMAVLEYR 213
>gi|310657417|ref|YP_003935138.1| yaaj [Clostridium sticklandii DSM 519]
gi|308824195|emb|CBH20233.1| YaaJ [Clostridium sticklandii]
Length = 157
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM AL+ + + P + C+IVKDG +I R HAE+ A++ A
Sbjct: 5 EFFMREALKEALKS-YSINEVP-IGCVIVKDGEIIARAHNNREQNKDPLGHAELIAIKNA 62
Query: 64 -----GEEARGATAYVTLEPCSHYGRSPP 87
G G YVTLEPC +
Sbjct: 63 AKHLGGWRLVGCDMYVTLEPCIMCSGAIM 91
>gi|15605579|ref|NP_220365.1| cytosine deaminase [Chlamydia trachomatis D/UW-3/CX]
gi|3329316|gb|AAC68441.1| cytosine deaminase [Chlamydia trachomatis D/UW-3/CX]
gi|297748972|gb|ADI51518.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis D-EC]
gi|297749852|gb|ADI52530.1| tRNA-specific adenosine deaminase [Chlamydia trachomatis D-LC]
Length = 163
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R P V C+IV +I RG + HAE+ +
Sbjct: 4 EKDLFFMKKALDEARKA-YEQDEVP-VGCIIVHGDKIIARGHNSVEQLKDPTVHAEMICI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A E + Y TLEPC
Sbjct: 62 SAAAEYLENWRLKDTILYCTLEPCLMC 88
>gi|319941641|ref|ZP_08015965.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
gi|319804871|gb|EFW01725.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B]
Length = 328
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ-- 58
D FM AL ++ G+ P V ++V DG VI RG HAE+
Sbjct: 161 EADRSFMRMALEEAQEA-GMAGEIP-VGAVVVADGKVIARGGNETLRSGDPTAHAEIVAL 218
Query: 59 ---ALEEAGEEARGATAYVTLEPCSHY 82
A A T YVTLEPC
Sbjct: 219 RAAAAALANHRLTNTTLYVTLEPCPMC 245
>gi|269792349|ref|YP_003317253.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099984|gb|ACZ18971.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 153
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEA 63
FM ALR + + G V ++V +G+V+GRG G P HAE+ A+ +A
Sbjct: 3 FMREALREAELAMEAGDV----PVGAVVVMNGLVVGRGRNVRELTGDPLGHAEMVAIRDA 58
Query: 64 G-----EEARGATAYVTLEPCSHY 82
GA+ YVTLEPC
Sbjct: 59 CSALGTWRLDGASLYVTLEPCVMC 82
>gi|240949642|ref|ZP_04753977.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
[Actinobacillus minor NM305]
gi|240295900|gb|EER46576.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
[Actinobacillus minor NM305]
Length = 150
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + V +++ K+G ++G G HAE+QA+ AGE
Sbjct: 1 MQYALSLADKAEQEGEI--PVGAVLIDKNGKILGEGWNRSIILSDSTAHAEIQAIRMAGE 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
+ + T YVTLEPC+
Sbjct: 59 QLQNYRLLDTTLYVTLEPCTMC 80
>gi|27382607|ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
gi|27355779|dbj|BAC52761.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
Length = 152
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63
FM AL+ + G P + C++V++ VI T Y HAE+ AL EA
Sbjct: 10 FMDLALKTAENA-GKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAK 67
Query: 64 ---GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 68 KIGSERLVDCDLYVTLEPCTMC 89
>gi|157164068|ref|YP_001466380.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
gi|112801624|gb|EAT98968.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826]
Length = 353
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 47/168 (27%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL----- 60
D +M AL + LT NP+V CL++ + ++ G HAE A+
Sbjct: 3 DEFYMGLALSEAWKFQILTYPNPAVGCLVLDENEQILSCKAHEKAGYLHAEPTAILFALC 62
Query: 61 ----------------------------------------EEAGEEARGATAYVTLEPCS 80
+ + AYVTLEPCS
Sbjct: 63 KKSEKFKDDFIKAYNAKFSSDIKENEFGLLEPKFSYEFILNNHSNLLKNSKAYVTLEPCS 122
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
H+G++PPCA + E G V++ + +++ G L G+ V
Sbjct: 123 HHGKTPPCANLLKELGFSDVIIG-SHDENKIASGGGNLLQSAGVNVKF 169
>gi|55821816|ref|YP_140258.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
thermophilus LMG 18311]
gi|55737801|gb|AAV61443.1| cytidine/deoxycytidylate deaminase family protein, putative
[Streptococcus thermophilus LMG 18311]
Length = 172
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EIFMSEALKEAQKSLDKAEI--PIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|116628523|ref|YP_821142.1| cytidine/deoxycytidylate deaminase family protein, putative
[Streptococcus thermophilus LMD-9]
gi|116101800|gb|ABJ66946.1| tRNA-adenosine deaminase [Streptococcus thermophilus LMD-9]
Length = 172
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EIFMSEALKEAQKSLDKAEI--PIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|296875658|ref|ZP_06899727.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
15912]
gi|322390383|ref|ZP_08063906.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC
903]
gi|296433342|gb|EFH19120.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC
15912]
gi|321142924|gb|EFX38379.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC
903]
Length = 180
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
FM AL+ + + + + C++VKDG +IGRG A HAE+ A+EEA +
Sbjct: 22 FMREALKEAEIAL--ANDEIPIGCVLVKDGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 79
Query: 66 -----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 80 RENSWRLLDTTLFVTIEPCVMCS 102
>gi|148266168|ref|YP_001232874.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4]
gi|146399668|gb|ABQ28301.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter
uraniireducens Rf4]
Length = 160
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AAL ++ + +IV +G +IGRG G H E+ ALE AG
Sbjct: 19 FMQAALAEAKQGQAEGGI--PIGSVIVHNGRIIGRGHNRRVQKGSAILHGEMDALENAGR 76
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R T Y TL PC+
Sbjct: 77 QTAAVYRECTLYTTLSPCAMCS 98
>gi|296537269|ref|ZP_06899158.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
49957]
gi|296262404|gb|EFH09140.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
49957]
Length = 225
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 1/211 (0%)
Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
G TA GG PHAE +AL+ AG ARGATAYVTLEPC H+GR+PPC +I G+ RVVV +
Sbjct: 1 GWTAPGGRPHAETEALKRAGAAARGATAYVTLEPCCHWGRTPPCTDALIAAGVARVVVAM 60
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
DPD RV G G++ L GI V +E E + + R +TLK+A + D
Sbjct: 61 RDPDPRVDGGGIEQLRAAGIAVSTGLLEDEARAINAGFTKRLTRNLPLLTLKLASTLDGR 120
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
I S ITG ++ H LR DA+LVG GT LADDPEL+CR+ G +R++
Sbjct: 121 IATRSGESQWITGAPARRLAHALRGTHDAVLVGSGTALADDPELSCRIPGFAPVPTVRVV 180
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
D +LS +++++ I
Sbjct: 181 ADARLRLSPGARMLREGGGPVWIATRPGHPD 211
>gi|255580984|ref|XP_002531310.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus
communis]
gi|223529101|gb|EEF31082.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus
communis]
Length = 223
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
+M AL +R + S V C+IV+DG VI G HAE++A++
Sbjct: 46 YMELALEQARHALD--SLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLE 103
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
E E+ YVT EPC
Sbjct: 104 QWQKGGLSVSEVAEKFSKCVLYVTCEPCIMC 134
>gi|188996174|ref|YP_001930425.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931241|gb|ACD65871.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 221
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + +H RA+ D I+VG T+ D+P LT R +P RII
Sbjct: 27 KEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTDNPYLTVRYVS--GKNPTRIIPTSTA 84
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ LD+ I+K ++ + + + K + + + DL K++ IL +G+
Sbjct: 85 DIPLDANILKKDSPTIIVTTEKAPEERVKALSEKVEVIVAGKEEVDLIKMMDILYNKGIR 144
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRR 343
+L+VEGG+ + + I + LVD I + ++G P+ + +
Sbjct: 145 NLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVGGTDTPTLVGGEGFKSLEEVVKLKLRAH 204
Query: 344 DYFGSDVCLEYIGK 357
GS + E+ K
Sbjct: 205 FMRGSHLITEWEVK 218
>gi|163786614|ref|ZP_02181062.1| putative cytosine/adenosine deaminase [Flavobacteriales bacterium
ALC-1]
gi|159878474|gb|EDP72530.1| putative cytosine/adenosine deaminase [Flavobacteriales bacterium
ALC-1]
Length = 149
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M D FM AL+ + G V +IV +I R H
Sbjct: 1 MISPFDDTYFMRKALQEAEVAFEKGEI----PVGAIIVVKDRIIARTHNLTELLNDVTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+QA+ A G+ T YVTLEPC
Sbjct: 57 AEMQAITSAANFLGGKYLIDCTLYVTLEPCQMC 89
>gi|330995719|ref|ZP_08319617.1| guanine deaminase [Paraprevotella xylaniphila YIT 11841]
gi|329574778|gb|EGG56339.1| guanine deaminase [Paraprevotella xylaniphila YIT 11841]
Length = 155
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
+FM A+ S + G +IVK ++ GV HAEV A
Sbjct: 4 KKFMRKAIELSVENVKNGGG------PFGAVIVKGDEIVATGVNRVTAHNDPTAHAEVSA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ EA G Y + EPC
Sbjct: 58 IREACRRLGTFDLSGCEIYTSCEPCPMC 85
>gi|167563146|ref|ZP_02356062.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
oklahomensis EO147]
gi|167570332|ref|ZP_02363206.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
oklahomensis C6786]
Length = 193
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 5 SFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
D R+M AL + G V +IV+ VI RG G HAE+
Sbjct: 26 ERDRRYMRMALEAADEARAAGEV----PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMA 81
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPP 87
AL A G YVTLEPC +
Sbjct: 82 ALRAAARALRNYRMPGCELYVTLEPCLMCSGAIM 115
>gi|55823732|ref|YP_142173.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
thermophilus CNRZ1066]
gi|55739717|gb|AAV63358.1| cytidine/deoxycytidylate deaminase family protein, putative
[Streptococcus thermophilus CNRZ1066]
Length = 172
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FMS AL+ ++ + + C+IVKD ++GRG A HAEV A++EA
Sbjct: 10 EIFMSEALKEAQKSLDKAEI--PIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRTVGNWRLLDCTLFVTIEPCVMCS 92
>gi|51248026|pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine
Deaminase. The First Domain-Swapped Structure In The
Cytidine Deaminase Superfamily
gi|51248027|pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine
Deaminase. The First Domain-Swapped Structure In The
Cytidine Deaminase Superfamily
Length = 164
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
F+ A+ + V +IVKDG +I G T+ HAEV A+ +
Sbjct: 11 HETFLKRAVTLACEGV-NAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + Y + EPC
Sbjct: 70 ACKVLGAYQLDDCILYTSCEPCPMC 94
>gi|48477494|ref|YP_023200.1| deaminase [Picrophilus torridus DSM 9790]
gi|48430142|gb|AAT43007.1| deaminase [Picrophilus torridus DSM 9790]
Length = 172
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
++D FM A + V +IVKD V+ G
Sbjct: 6 KRPTWDEYFMRMAYLAASRSNCTRRK---VGAVIVKDNQVLATGYNGPPTHAVNCDLVGC 62
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE A+ +A G +GA YVT PC +
Sbjct: 63 IRDELGIQSGERHELCRGLHAEQNAIIQAAVNGVSIKGAKIYVTTHPCVVCSKMLM 118
>gi|332289514|ref|YP_004420366.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
gi|330432410|gb|AEC17469.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179]
Length = 153
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL + +G V ++V + G ++ G HAE+ AL +A
Sbjct: 1 MQYALALADNAAMMGEI----PVGAVLVDEQGNIVAEGWNQSITLSDPTAHAEIMALRQA 56
Query: 64 GEEARGA-----TAYVTLEPCSHY 82
G++ + T YVTLEPC
Sbjct: 57 GQKLQNYRLLNLTLYVTLEPCPMC 80
>gi|282878399|ref|ZP_06287187.1| guanine deaminase [Prevotella buccalis ATCC 35310]
gi|281299477|gb|EFA91858.1| guanine deaminase [Prevotella buccalis ATCC 35310]
Length = 155
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D M A+ S V T P +I KDG +I + HAEV
Sbjct: 1 MNQQDI--MRRAIALSEKSV-RTGGGP-FGAVIAKDGEIIAEASNTVTLDHDPTAHAEVN 56
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ +A + G Y + EPC
Sbjct: 57 AIRQAAHKLGTFDLTGCDIYTSCEPCPMC 85
>gi|255628537|gb|ACU14613.1| unknown [Glycine max]
Length = 182
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M S FM A++ +R + P V C+I +DG VI G HAE
Sbjct: 1 MTSSET-LAFMELAIQQARLAL-DVLEVP-VGCVIAEDGKVIASGRNRTTETRNATRHAE 57
Query: 57 VQALE--------------EAGEEARGATAYVTLEPCSHY 82
++A++ E E+ + YVT EPC
Sbjct: 58 MEAIDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMC 97
>gi|71275637|ref|ZP_00651922.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Dixon]
gi|71897819|ref|ZP_00680045.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Ann-1]
gi|71163528|gb|EAO13245.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Dixon]
gi|71732374|gb|EAO34428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Ann-1]
Length = 203
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
PV +M AL + P V +++ +G ++G G T++ HAE
Sbjct: 44 PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 102
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL AG + R G T YVTLEPC
Sbjct: 103 IMALRAAGHQLRNHRMPGCTLYVTLEPCLMC 133
>gi|296436400|gb|ADH18574.1| cytosine deaminase [Chlamydia trachomatis G/9768]
gi|296438259|gb|ADH20420.1| cytosine deaminase [Chlamydia trachomatis G/11074]
gi|297140760|gb|ADH97518.1| cytosine deaminase [Chlamydia trachomatis G/9301]
Length = 163
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R P V C+IV +I RG + HAE+ +
Sbjct: 4 EKDLFFMKKALDEARKA-YEQDEVP-VGCIIVHGDKIIARGHNSVEQLKDPTAHAEMICV 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A E + Y TLEPC
Sbjct: 62 SAAAEYLENWRLKDTILYCTLEPCLMC 88
>gi|319789749|ref|YP_004151382.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
HB-1]
gi|317114251|gb|ADU96741.1| CMP/dCMP deaminase zinc-binding protein [Thermovibrio ammonificans
HB-1]
Length = 148
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 33/112 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
MP S+D FMS A + T V ++VKD +I G
Sbjct: 1 MPRPSWDEYFMSIAQMVATRS---TCLRRQVGAVLVKDKRIISTGYNGPPSGLKHPEEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G +G+ Y T PCS
Sbjct: 58 CLREKLGIPSGERHELCRGLHAEQNAIIQAALHGVSTKGSVLYCTHCPCSLC 109
>gi|109900168|ref|YP_663423.1| cytosine deaminase [Pseudoalteromonas atlantica T6c]
gi|109702449|gb|ABG42369.1| Cytosine deaminase [Pseudoalteromonas atlantica T6c]
Length = 145
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+FM AA+ ++ + + ++V + +IGRG G P H E+ ALE AG
Sbjct: 3 KFMQAAIDEAKLGLAEGGI--PIGSVLVHNNKIIGRGHNKRVQSGSPILHGEMDALENAG 60
Query: 65 EEA----RGATAYVTLEPCSHYG 83
+ + +T Y TL PCS
Sbjct: 61 RQPARVYKESTLYTTLSPCSMCS 83
>gi|330950762|gb|EGH51022.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae Cit 7]
Length = 167
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V++G +IGRG HAE+ A+
Sbjct: 10 SKDQYFMRE--ALALAAQGALLGEVPVGAVLVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 68 RDAAKTLDNYRLPGSTLYVTLEPCSMC 94
>gi|152988290|ref|YP_001348100.1| putative deaminase [Pseudomonas aeruginosa PA7]
gi|150963448|gb|ABR85473.1| probable deaminase [Pseudomonas aeruginosa PA7]
Length = 151
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 8 ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
FM A+ +R G ++V+DG V+ RGV + HAE+QA+
Sbjct: 4 ETFMREAIALARANVEAGGR-----PFGAVLVRDGQVLARGVNQTHESHDPSAHAELQAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A G Y + PC
Sbjct: 59 RQASRLLGSPRLDGCEIYASGHPCPMC 85
>gi|34541357|ref|NP_905836.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
gi|34397674|gb|AAQ66735.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
Length = 150
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
M A+R + V +IVKDG +I HAEV + A +
Sbjct: 1 MMREAIRLADESVANGGG--PFGAVIVKDGEIIAATSNRVTLDNDPTAHAEVNCIRMACK 58
Query: 66 E-----ARGATAYVTLEPCSHY 82
G T Y + EPC
Sbjct: 59 RLGTFDLSGCTIYTSCEPCPMC 80
>gi|20092885|ref|NP_618960.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
acetivorans C2A]
gi|19918192|gb|AAM07440.1| riboflavin-specific deaminase [Methanosarcina acetivorans C2A]
Length = 227
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 13/224 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R I + A+S D + V I+G + ++ LRAQ+DAI+VGIGTVLADDP
Sbjct: 1 MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAQADAIMVGIGTVLADDPS 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + + +P+RII+D + LD+ I K +I V+ +
Sbjct: 61 LTVKSPERKAARKAAGKSENPVRIIIDSAARTPLDADIFKKGEGLRIIAVSNSAPAEKIK 120
Query: 259 A-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ K + +L +L +L G+ +L+VEGGA + +++ LVD + +
Sbjct: 121 SLEEKARVIKTGDFKVNLPELAVLLKEMGINTLMVEGGATLNWGMLSAGLVDEVYTFVGN 180
Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIGK 357
++IG P+ + + + + L++ K
Sbjct: 181 LIIGGKTAPTFTDGEGFTEAELLGLELLSAEKIEDGILLKWKIK 224
>gi|223041133|ref|ZP_03611388.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
gi|222877627|gb|EEF12753.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267]
Length = 362
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA------ 59
D +MS A++ + LT NP+V C+++ G ++ G HAE A
Sbjct: 4 DEFYMSLAIKKAWEFQILTYPNPAVGCVVLDAGGRLLSVAAHKRAGFLHAEPSAVLLALC 63
Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77
L+ G+ +GA AYVTLE
Sbjct: 64 KKSEAFLHDFLREYNAALGIKFESVAELTNADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123
Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
PC+H G++PPCA+ + VV+ D + V+ G L G+ V
Sbjct: 124 PCAHRGKTPPCAELLRLLKFAEVVIARGDENA-VASGGAHILQSGGVAVKF 173
>gi|163791639|ref|ZP_02186036.1| cytidine/deoxycytidylate deaminase family protein [Carnobacterium
sp. AT7]
gi|159873088|gb|EDP67195.1| cytidine/deoxycytidylate deaminase family protein [Carnobacterium
sp. AT7]
Length = 174
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
FM A++ + + ++V +G +IGRG HAE+ A++EA
Sbjct: 9 YFMQEAIKEAHKAKEKLEV--PIGAVVVLNGKIIGRGHNIREESNDATTHAEMLAIQEAN 66
Query: 65 E-----EARGATAYVTLEPCSHYG 83
+VTLEPC
Sbjct: 67 RYLGNWRLEETQLFVTLEPCPMCS 90
>gi|29830662|ref|NP_825296.1| riboflavin/cytosine deaminase [Streptomyces avermitilis MA-4680]
gi|29607774|dbj|BAC71831.1| putative diaminohydroxyphosphoribosylaminopyrimi dine deaminase
(N-terminal)/ 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Streptomyces avermitilis MA-4680]
Length = 376
Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 10/219 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
++ L AVS D + G + ++G ++V +RA SDAILVG GT+ D+P
Sbjct: 1 MPHPYVLLSAAVSLDGFLDDTGPDRLLLSGPADFDRVDEVRAASDAILVGAGTLRTDNPR 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L + P+++ + L D++ T V + + + L
Sbjct: 61 LLVNSAERRAARVAEGLPEYPLKVTVTASGDLDPDAQFWHTGGEKAVYTTDKGAERLREL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ + L + +GV L+VEGG V + L D + L + +
Sbjct: 121 GIAADVVAVGAELEWRA-VLDHLGRVKGVRRLMVEGGGRVHTQLLQQGLADELQLAVAPL 179
Query: 319 VIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
+G+ P G V G V + Y+
Sbjct: 180 FVGQAQAPRMFGSGGYPPGRMRLVETRPVGDVVLMRYVP 218
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQAL 60
++ D +++ A + + T SV +IV DG + RG + GG P HAE AL
Sbjct: 228 TAADRHWLALACELADR-CPPSRTAFSVGAVIVAADGTELARGHSREGGDPVVHAEEAAL 286
Query: 61 EEAGE---EARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ GAT Y +LEPC R PCA+ I++ G+RRVV +PD
Sbjct: 287 AKLDAEDPRLAGATVYSSLEPCARRTSRPRPCARLILDAGVRRVVTAWREPDTF 340
>gi|217979127|ref|YP_002363274.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
gi|217504503|gb|ACK51912.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
Length = 145
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
M + D RFM AAL+ + LI +DG I G T HAE
Sbjct: 1 MISRATDERFMRAALKEAALGDF------PFGALIAQDGETIATGRNLGETNDDPTAHAE 54
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+ AL R +T Y T EPC
Sbjct: 55 MVALRGVIAAYGAARLRDSTLYATGEPCPMC 85
>gi|304385470|ref|ZP_07367815.1| tRNA-specific adenosine deaminase [Pediococcus acidilactici DSM
20284]
gi|304328677|gb|EFL95898.1| tRNA-specific adenosine deaminase [Pediococcus acidilactici DSM
20284]
Length = 161
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
+M AL+ +++ + + ++V DG +IGRG + HAEV A+ EA
Sbjct: 10 QFYMGEALKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDATTHAEVLAITEA 67
Query: 64 GEEAR-----GATAYVTLEPCSHYG 83
R +VT+EPC
Sbjct: 68 CAYLRSWRLWDCQLFVTIEPCLMCS 92
>gi|295692237|ref|YP_003600847.1| tRNA-specific adenosine deaminase [Lactobacillus crispatus ST1]
gi|295030343|emb|CBL49822.1| tRNA-specific adenosine deaminase [Lactobacillus crispatus ST1]
Length = 166
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
++M A+ ++ G + ++V DG V+G G HAE+ A+
Sbjct: 8 RKYMQLAIDQAKEAEKQGEV----PIGAVVVDPDGRVVGTGYNRRELDEDATQHAEMIAI 63
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
+EA + +VTLEPC
Sbjct: 64 KEACSKLGMWRLIDCSLFVTLEPCPMC 90
>gi|297200713|ref|ZP_06918110.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
29083]
gi|197712280|gb|EDY56314.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC
29083]
Length = 375
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 10/219 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P
Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L + P+++ + +L D+ T V + AL
Sbjct: 61 LLVNSETRRAARVAAGKPPYPLKVTVSGSGELDPDANFWHTGGDKLVFTTDQGAQRARAL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+++ + + L + RGV L+VEGG + + L D + L + +
Sbjct: 121 GLAADVVSLGP-ELDWRRLLEHLHEERGVERLMVEGGGRIHTQLLQQGLADEVQLVLAPL 179
Query: 319 VIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356
+G P G + V V + Y
Sbjct: 180 FVGSPEAPRLFGPGAYQSGRLRLVETRRIEDVVLMRYEP 218
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALEE- 62
D +++ A + + T SV ++V DG + RG + G P HAE AL +
Sbjct: 231 DHHWLALACELATR-CPPSQTAFSVGAVVVAADGTELARGHSREGDDPVVHAEEAALAKI 289
Query: 63 --AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQW 118
A AT Y +LEPC+H R PCA+ I++ G+RRVV +PD V+ G
Sbjct: 290 DPADPRLATATVYTSLEPCTHRASRPAPCARLILDAGVRRVVTAWREPDTFVAGADGTGT 349
Query: 119 LSQKGIIVDRMMESEGK 135
L+ G+ V + E E +
Sbjct: 350 LTAAGVDVVVLGEHEER 366
>gi|227824235|ref|ZP_03989067.1| dCMP deaminase [Acidaminococcus sp. D21]
gi|226904734|gb|EEH90652.1| dCMP deaminase [Acidaminococcus sp. D21]
Length = 153
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 33/113 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M +D+ FM A ++ T V ++VKD ++ G
Sbjct: 1 MKRPDWDSYFMEIAEVVAKRS---TCLRRQVGAVLVKDRQILATGYNGTPKGIAHCEEVG 57
Query: 47 ------TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
G HAE A+ +A G +GAT Y T +PC
Sbjct: 58 CLREQLHVPSGQNHELCRGIHAEQNAVIQAAVNGVSTKGATLYCTHQPCVVCS 110
>gi|125624632|ref|YP_001033115.1| hypothetical protein llmg_1843 [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493440|emb|CAL98414.1| conserved hypothetical protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071423|gb|ADJ60823.1| hypothetical protein LLNZ_09485 [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 155
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HA 55
M + + FM+ AL+ ++ + +IVKDG +I R G HA
Sbjct: 1 MNFTEEEKEFFMTEALKEAQKAAEN--EEVPIGVVIVKDGEIIARDFNRRELDGRATHHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+E A + +VT+EPC
Sbjct: 59 EVCAIEAANQAVGNWRLLDCALFVTIEPCVMC 90
>gi|322378196|ref|ZP_08052680.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. M334]
gi|321280826|gb|EFX57842.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. M334]
Length = 155
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGAIIGRGHNAREELQRAVMHAEIMAIENA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|299770395|ref|YP_003732421.1| putative deaminase [Acinetobacter sp. DR1]
gi|298700483|gb|ADI91048.1| putative deaminase [Acinetobacter sp. DR1]
Length = 158
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M A + G V ++V VIG G A HAE+QA+ A
Sbjct: 1 MQLAYEQAELAAQQGEI----PVGAIVVSQNRVIGSGYNAPISLLDPTAHAEIQAIRAAC 56
Query: 65 EEARG------ATAYVTLEPCSHY 82
AT YVTLEPC+
Sbjct: 57 LSLNNYRLPDDATLYVTLEPCTMC 80
>gi|288561455|ref|YP_003424941.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
gi|288544165|gb|ADC48049.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
Length = 155
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
+FM A++ + + ++VK+ +I RG HAE+ A+E
Sbjct: 1 MHQKFMEEAIKEAEISSKEGGL--PIGAVLVKENQIISRGHNRLIQKDSSILHAEMDAIE 58
Query: 62 EAG----EEARGATAYVTLEPCSHYG 83
AG E+ + T Y TL PC
Sbjct: 59 NAGRLNHEDYQKCTLYTTLSPCPMCS 84
>gi|119485470|ref|ZP_01619798.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
sp. PCC 8106]
gi|119457226|gb|EAW38352.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
sp. PCC 8106]
Length = 161
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
M + +M AL +R G P V +I+ G ++ HA
Sbjct: 1 MNGYTTHCHWMKRALELARSA-GEAGEVP-VGAVIINPQGQLLAEAENRRERDNDPTAHA 58
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+ L +AG++ + T YVTLEPC
Sbjct: 59 EILVLRQAGQKLKDWHLNQCTLYVTLEPCPMC 90
>gi|306821661|ref|ZP_07455259.1| tRNA-specific adenosine deaminase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550406|gb|EFM38399.1| tRNA-specific adenosine deaminase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 153
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63
+FM AL + V C+IVK VI HAE+ A++EA
Sbjct: 4 EKFMKKALSNAIRA--YIQDEVPVGCVIVKGDEVIASTYNTKKATKSAINHAEILAIDEA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ YVTLEPC
Sbjct: 62 SRKLGRFILDDCDMYVTLEPCLMC 85
>gi|76799055|ref|ZP_00781248.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 18RS21]
gi|76585592|gb|EAO62157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 18RS21]
Length = 168
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63
FM+ AL+ ++ + + C+IVKDG +IGRG A HAE+ A+ A
Sbjct: 10 EWFMTEALKXAKSSLEK--EEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
E T +VT+EPC
Sbjct: 68 NEKVGNWRLLDTTLFVTVEPCVMCS 92
>gi|94312654|ref|YP_585863.1| CMP/dCMP deaminase [Cupriavidus metallidurans CH34]
gi|93356506|gb|ABF10594.1| CMP/dCMP deaminase [Cupriavidus metallidurans CH34]
Length = 156
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
++ R++ A+ +R ++ +IVKDG VI GV HAE+ A
Sbjct: 3 TNHAERYLGEAIELARTNLEQGGR--PFGAVIVKDGEVIATGVNQILSTNDPTAHAELTA 60
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ A ++ G Y + PC
Sbjct: 61 IRAASQKLGSPSLDGCAVYASGHPCPMC 88
>gi|159038150|ref|YP_001537403.1| deaminase-reductase domain-containing protein [Salinispora
arenicola CNS-205]
gi|157916985|gb|ABV98412.1| bifunctional deaminase-reductase domain protein [Salinispora
arenicola CNS-205]
Length = 230
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 12/227 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L AVS D I A + ++ ++V +RA DAILVG T+ DDP
Sbjct: 1 MSDRPYVLLSCAVSVDGYIDDATEDRLLLSNAADVDRVDEVRAGCDAILVGAATIRKDDP 60
Query: 206 E--------LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
R++ + +P++ + L ++ V+ +
Sbjct: 61 RLLVRSQARRDTRIHRGRPATPLKATITGRGDLDPTAQFFTAGDSTKVVYTATSALDKTC 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + DL ++L L RGV L+VEGG ++ F+ + L D + L +
Sbjct: 121 ETVGTVADVVDAGEPVDLDRVLADLASRGVARLMVEGGGSMHTMFLTAGLADELHLVVAP 180
Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
+G+ P + +G V L Y + C
Sbjct: 181 FFVGDSRAPRFVYDGCFPWSPQGRARLADVVKIEDLVLLRYALSDRC 227
>gi|307293957|ref|ZP_07573801.1| CMP/dCMP deaminase zinc-binding [Sphingobium chlorophenolicum
L-1]
gi|306880108|gb|EFN11325.1| CMP/dCMP deaminase zinc-binding [Sphingobium chlorophenolicum
L-1]
Length = 152
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M AL +R G + ++ DG ++G G HAE+ A+ A
Sbjct: 11 MRRALDLARSAAEAGEV----PIGAVVTLDGRIVGEGENRNRRDNDPTAHAEIVAIRAAA 66
Query: 65 E-----EARGATAYVTLEPCSHY 82
G +VTLEPC+
Sbjct: 67 AHLGDFRLNGCDLWVTLEPCAMC 89
>gi|209527530|ref|ZP_03276032.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
gi|209492018|gb|EDZ92371.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
Length = 157
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQA 59
+ + +M AL+ G P V +IV G +I +G HAE+ A
Sbjct: 6 TTHSHWMRQALKLGA-AAGEAGEVP-VGAVIVNQQGKLIAQGENRRERDRDPTAHAEIIA 63
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A + T YVTLEPC
Sbjct: 64 LRQASQVLGDWHLDTCTLYVTLEPCPMC 91
>gi|330975928|gb|EGH75994.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 169
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V++G +IGRG HAE+ A+
Sbjct: 10 SNDRYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 68 RDAAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|310779654|ref|YP_003967987.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
2926]
gi|309748977|gb|ADO83639.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM
2926]
Length = 165
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 32/103 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM AL ++ + V IV K+ ++G G G P
Sbjct: 11 WDEYFMGIALLSAKRSK---DPSTQVGACIVNKENKIVGVGY---NGFPKGCSDDNFPWD 64
Query: 54 --------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE A+ + ++ T YV L PC
Sbjct: 65 REGEFLETKYPFVMHAEQNAILNSIKKLSDCTIYVGLFPCHEC 107
>gi|227355507|ref|ZP_03839902.1| guanine deaminase [Proteus mirabilis ATCC 29906]
gi|227164303|gb|EEI49192.1| guanine deaminase [Proteus mirabilis ATCC 29906]
Length = 153
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +F+ A+ + +V P +IVK+G VI V HAE+ AL E
Sbjct: 3 DKQFIQQAISLATENV-KVGGRP-FGAVIVKNGQVIAHAVNQITATNDPTAHAELLALRE 60
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
AG+ + Y + +PC + A
Sbjct: 61 AGKVLGRAKLDDCVVYASGQPCPMCLAAMRMAGISQIFYAY 101
>gi|315641449|ref|ZP_07896521.1| tRNA-specific adenosine deaminase [Enterococcus italicus DSM 15952]
gi|315482737|gb|EFU73261.1| tRNA-specific adenosine deaminase [Enterococcus italicus DSM 15952]
Length = 186
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
FM AA+ ++ + + ++V +G +IGRG T HAE+ A+ EA
Sbjct: 29 YFMCAAIGEAKKAQAIAEV--PIGAVVVLEGEIIGRGHNLRETTQDATMHAEMIAIREAC 86
Query: 65 E-----EARGATAYVTLEPCSHYGRSPP 87
+ +VTLEPC G +
Sbjct: 87 AKVGSWRLEDSQLFVTLEPCPMCGGAAM 114
>gi|212535962|ref|XP_002148137.1| tRNA-specific adenosine deaminase subunit TAD2, putative
[Penicillium marneffei ATCC 18224]
gi|210070536|gb|EEA24626.1| tRNA-specific adenosine deaminase subunit TAD2, putative
[Penicillium marneffei ATCC 18224]
Length = 190
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 3 VSSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
V+ D +FM AL + G T V C++V G +IG G+ + G HA
Sbjct: 18 VTQEDQEKFMKEALSMGEKALEAGET----PVGCVLVLQGKIIGSGMNDTNRSMNGTRHA 73
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E A+EEA + YVT+EPC
Sbjct: 74 EFLAIEEALQTYPRSIFKHVDLYVTVEPCVMC 105
>gi|157961143|ref|YP_001501177.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345]
gi|157846143|gb|ABV86642.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345]
Length = 163
Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ + G V ++VKDG V+ G G HAE+Q L +AG
Sbjct: 1 MKMAMDMAIKAEEKGEV----PVGAVLVKDGEVVSAGFNFSIGLHDPSAHAEMQCLRQAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC+
Sbjct: 57 QIMQNYRLLDTTLYVTLEPCAMC 79
>gi|309812017|ref|ZP_07705783.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Dermacoccus sp. Ellin185]
gi|308434075|gb|EFP57941.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Dermacoccus sp. Ellin185]
Length = 159
Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRW--HVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
+M AL +R G V L+V DG VIG G G P HAE+ A+
Sbjct: 16 WMGRALELAREVGAAGDV----PVGALVVDPDGEVIGVGANLREVDGDPTGHAEIVAMRR 71
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G G T VTLEPC
Sbjct: 72 AAASRGGWRLDGCTLVVTLEPCLMC 96
>gi|219870714|ref|YP_002475089.1| tRNA-adenosine deaminase [Haemophilus parasuis SH0165]
gi|219690918|gb|ACL32141.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases
[Haemophilus parasuis SH0165]
Length = 157
Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + V ++V G +IG G HAE+QA+ AG+
Sbjct: 1 MQYALSLADKAEAEGEI--PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQ 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
+ + T YVTLEPC+
Sbjct: 59 QIQNYRLLDTTLYVTLEPCTMC 80
>gi|52140651|ref|YP_086177.1| cytidine/deoxycytidylate deaminase family protein; guanine
deaminase [Bacillus cereus E33L]
gi|51974120|gb|AAU15670.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
deaminase [Bacillus cereus E33L]
Length = 153
Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
FM A+ + + P ++VKDG ++ +GV + HAE+ + E
Sbjct: 3 HKEFMKLAIDLAYNNTKNEKGKP-FGAVLVKDGEIVAKGVNEVLTTHDPTAHAELLTIRE 61
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A + Y + EPC P C I ++ V + G G +
Sbjct: 62 ACRILSTSDLSDCILYASGEPC------PMCLSAIYWANLKHVYYSYTSQEEEEIGLGTK 115
Query: 118 WLSQ 121
++ Q
Sbjct: 116 YVYQ 119
>gi|332707396|ref|ZP_08427446.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
gi|332353887|gb|EGJ33377.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
Length = 150
Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 11 MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
M+ A+ S R G ++VKDG +I + HAE+ A+ +
Sbjct: 1 MNEAIALSVISVRSGKGG-----PFGAVVVKDGEIIAKAHNQVTSTNDPTAHAEIVAIRD 55
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + G Y + EPC
Sbjct: 56 ACKVLQTFQLTGCELYTSCEPCPMC 80
>gi|317034863|ref|XP_001400634.2| cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Aspergillus niger CBS 513.88]
Length = 190
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+S A FM AL + T P V C++V D ++G G+ + G HAE A
Sbjct: 13 NSEHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDKKIVGFGMNDTNKSMNGTRHAEFIA 70
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+EE E R YVT+EPC
Sbjct: 71 IEEMLETYPRSALRSTDLYVTVEPCVMC 98
>gi|296090277|emb|CBI40096.3| unnamed protein product [Vitis vinifera]
Length = 205
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE---- 61
FM A++ ++ + S V C+IV+DG +I G HAE++A++
Sbjct: 30 FMELAIQQAKLALD--SLEVPVGCVIVEDGKLIATGRNRTTETRNATRHAEMEAIDVLLE 87
Query: 62 ----------EAGEEARGATAYVTLEPCSHY 82
E E + YVT EPC
Sbjct: 88 QWQKNGLSKLEVAEIFSKCSLYVTCEPCIMC 118
>gi|116753576|ref|YP_842694.1| CMP/dCMP deaminase, zinc-binding [Methanosaeta thermophila PT]
gi|116665027|gb|ABK14054.1| CMP/dCMP deaminase, zinc-binding protein [Methanosaeta thermophila
PT]
Length = 144
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 31/113 (27%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M D FM A ++ L + V +IV+D ++ G
Sbjct: 1 MDRPGLDEYFMEIASVVAKRSTCLRN---RVGAVIVRDKRILSTGYNGAPTGLEHCDVAG 57
Query: 47 -----------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 58 CLREKVESGTRHELCRAVHAEQNAIIQAALHGVSIEGATLYCTHQPCILCAKM 110
>gi|330968078|gb|EGH68338.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 169
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
S D FM AL + G V ++V++G +IGRG HAE+
Sbjct: 10 SNDQHFMREALALAAQGALRGEV----PVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMV 65
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A G+T YVTLEPCS
Sbjct: 66 AIRDAARALDNYRLPGSTLYVTLEPCSMC 94
>gi|282856020|ref|ZP_06265309.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
gi|282586139|gb|EFB91418.1| ComE operon protein 2 [Pyramidobacter piscolens W5455]
Length = 180
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
+++ FM+ AL + T V +IV+DG +I G G P
Sbjct: 7 DWESYFMTLALVAATRS---TCLRRQVGAVIVRDGQIISTGYNGAPKGTPHCFETGCLRT 63
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G GA+ Y T PCS
Sbjct: 64 KLGIPSGERHEICRGSHAEMNAIAQAASVGVSTAGASLYCTHSPCSFC 111
>gi|110668419|ref|YP_658230.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
walsbyi DSM 16790]
gi|109626166|emb|CAJ52622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum
walsbyi DSM 16790]
Length = 229
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 11/215 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE---- 206
H+ + A+S D + V I+G +V LRA +DAILVGIGTVLADDP
Sbjct: 2 HVVVNAAISIDGKLSTRRREQVAISGERDFERVSELRANNDAILVGIGTVLADDPHLVVE 61
Query: 207 ---LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRK 262
R + +P RII+D + D++++ +I+ L
Sbjct: 62 GSYRKRRQDQGLIPTPHRIIIDSRARTPTDAEVLDDEAPTYIIVSESAPTSRQADLEVEG 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
N+ I D + L+ L G++S++VEGG + S + LVD + +Y ++IG
Sbjct: 122 ANVMIAGRDRVSMPAALSALADSGMSSIMVEGGGEIIFSLFEANLVDELSVYVGSMLIGG 181
Query: 323 GGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEY 354
P+ + V L+Y
Sbjct: 182 RDAPTLADGDGFIDDPTQLQLTSVKQIDDGVLLQY 216
>gi|260102436|ref|ZP_05752673.1| tRNA-specific adenosine deaminase [Lactobacillus helveticus DSM
20075]
gi|260083756|gb|EEW67876.1| tRNA-specific adenosine deaminase [Lactobacillus helveticus DSM
20075]
Length = 168
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S+ ++M A+ ++ G + ++V +G VIG G
Sbjct: 1 MLSSADKKKYMELAIDQAKEAEKQGEV----PIGAVVVDPEGKVIGTGYNRRELDEDSTQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + +VTLEPC
Sbjct: 57 HAEMIAIKEACHNLGMWRLIDCSLFVTLEPCPMC 90
>gi|149923193|ref|ZP_01911606.1| cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Plesiocystis pacifica SIR-1]
gi|149815967|gb|EDM75483.1| cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Plesiocystis pacifica SIR-1]
Length = 165
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M A+ T + V L+V+DG ++G G HAEV A+ EA
Sbjct: 1 MRMAMALGAEAA--TRGDVPVGALVVRDGKILGVGFNTREQDHDPTGHAEVVAMREACRQ 58
Query: 66 ----EARGATAYVTLEPCSHY 82
GAT YVTLEPC
Sbjct: 59 ARRWRLDGATLYVTLEPCPMC 79
>gi|291518542|emb|CBK73763.1| Pyrimidine reductase, riboflavin biosynthesis [Butyrivibrio
fibrisolvens 16/4]
Length = 107
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL- 334
+L+ L G+ S+L+EGG + +S + S++VD I ++ + + G SP+E +
Sbjct: 21 NELMGKLGSLGIDSVLLEGGGTLNYSALESKIVDEIHIHIAPKIFGGSS-KSPVEGLGIS 79
Query: 335 ----EKNFMCVRRDYFGSDVCLE 353
+ + G+D+ +E
Sbjct: 80 DINKAIKLNPISTSWAGNDLIIE 102
>gi|167623310|ref|YP_001673604.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4]
gi|167353332|gb|ABZ75945.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4]
Length = 163
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ + G V ++VKDG V+ G G HAE+Q L +AG
Sbjct: 1 MKMAMDMAIKAEEKGEV----PVGAVLVKDGEVLSAGFNFSIGLHDPSAHAEMQCLRQAG 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T YVTLEPC+
Sbjct: 57 QIMQNYRLLDTTLYVTLEPCAMC 79
>gi|303237160|ref|ZP_07323730.1| guanine deaminase [Prevotella disiens FB035-09AN]
gi|302482547|gb|EFL45572.1| guanine deaminase [Prevotella disiens FB035-09AN]
Length = 155
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M A+ S V +I KDG +I G HAEV + +A
Sbjct: 4 EELMRRAIELSENSVRNGGG--PFGAVIAKDGEIIAEGSNRVTIDNDPTAHAEVCTIRKA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
E+ +G Y + EPC
Sbjct: 62 CEKLGTFDLKGCVIYTSCEPCPMC 85
>gi|15790310|ref|NP_280134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
sp. NRC-1]
gi|169236043|ref|YP_001689243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
salinarum R1]
gi|10580782|gb|AAG19614.1| riboflavin-specific deaminase [Halobacterium sp. NRC-1]
gi|167727109|emb|CAP13894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium
salinarum R1]
Length = 220
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP----- 205
H+ + A+S D + V ++G +V LRA DA++VG+GTVLADDP
Sbjct: 2 HVVVNAAMSADGKLSTRRREQVTLSGDADFERVDELRASVDAVMVGVGTVLADDPSLTLD 61
Query: 206 ---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA-LAFR 261
+ R + P R++ D H + D++++ A V++ L
Sbjct: 62 DSGHVAAREERGESPHPARVVADSHARTPPDARLLDGAAETYVLVAEAEPVEHRESLEAA 121
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + + DL L L RGV L+VEGG + S LVD + ++ + +IG
Sbjct: 122 GATVVVAGENRVDLPSALDALESRGVDRLMVEGGGELIFSLFAEELVDELSVFVAPQLIG 181
Query: 322 EGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEY 354
P+ + F D V L Y
Sbjct: 182 GRDAPTLADGDGFVAEFPTFELTGVDRLDDGVLLAY 217
>gi|3204108|emb|CAA07230.1| putative cytidine deaminase [Cicer arietinum]
Length = 186
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F+ A+ + V +IV + V+ HAEV A+
Sbjct: 29 DRDHKFLRKAVEEAYKGV-DCGDGGPFGAVIVHNDEVVASCHNMVLNYTDPTAHAEVTAI 87
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ + Y + EPC
Sbjct: 88 REACKKLKQIELSDCEIYASCEPCPMC 114
>gi|332880818|ref|ZP_08448489.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681201|gb|EGJ54127.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 144
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ DA +M AL +R V ++V ++ R T HAE+Q +
Sbjct: 2 ATDAFYMKKALEEARRAYEEDEI--PVGAVVVCGDRILARAHNLTETLTDVTAHAEMQVI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 60 TAAANALGGKYLNECTLYVTLEPCVMC 86
>gi|241764554|ref|ZP_04762572.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
gi|241365998|gb|EER60615.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN]
Length = 454
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++VKDG VI G A HAE+ AL A E G T YVTLEPC+
Sbjct: 18 PVGAVVVKDGQVIATGRNAPVQSHDPTAHAEIVALRAAAEQLGNYRLDGCTLYVTLEPCA 77
Query: 81 HYG 83
Sbjct: 78 MCS 80
>gi|254252116|ref|ZP_04945434.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
gi|124894725|gb|EAY68605.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158]
Length = 206
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
PVS+ DA FM L + + V ++V+ VI RG G HAE+
Sbjct: 39 PVSARDAHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 96
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 97 AALRMAAQRLQNYRMPGCELYVTLEPCLMC 126
>gi|75907026|ref|YP_321322.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
ATCC 29413]
gi|75700751|gb|ABA20427.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
ATCC 29413]
Length = 227
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 13/223 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
V+ R H T+ +A+S D I + K + A SDA+L+G GT+ A
Sbjct: 1 MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEEQIAASDAVLIGAGTLRAYG 60
Query: 205 PEL--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
L R + P+ I++ L+ + + + + ++ +
Sbjct: 61 TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIRRWLVTTNLGKNFWQ 120
Query: 257 ALAFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ ++ + D +L L + LLV GG A+ S + L+D L
Sbjct: 121 GRSEFERILVFETPTGEIDTITVLKQLTSLQIARLLVLGGGALVASMLELDLIDEFWLTV 180
Query: 316 SQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEY 354
+++G P+P++ L + + +V L Y
Sbjct: 181 CPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVEHEVFLHY 223
>gi|226330044|ref|ZP_03805562.1| hypothetical protein PROPEN_03957 [Proteus penneri ATCC 35198]
gi|225200839|gb|EEG83193.1| hypothetical protein PROPEN_03957 [Proteus penneri ATCC 35198]
Length = 324
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +F+ A+ + +V P +IV +G VI V HAE+ AL E
Sbjct: 208 DNQFIQQAISLAMDNV-KVGGRP-FGAVIVNNGQVIASAVNQIVTTNDPTAHAELLALRE 265
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
AG+ + Y + +PC + A + + +
Sbjct: 266 AGKVLGRTKLDDCIVYASGQPCPMCLAAMRMAGISKIFMPILMRMPSLTDYQQ 318
>gi|332292166|ref|YP_004430775.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332170252|gb|AEE19507.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 149
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
DA FM AL+ ++ G V ++V D ++I R HAE+QA
Sbjct: 6 DDAYFMKKALQEAQAAFDQGEI----PVGAVVVIDNMIIARAHNLTERLTDVTAHAEMQA 61
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ + T YVTLEPC
Sbjct: 62 ITSASNFIGGKYLQQCTLYVTLEPCQMC 89
>gi|289677917|ref|ZP_06498807.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. syringae FF5]
gi|330895911|gb|EGH28196.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. japonica str. M301072PT]
Length = 170
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V++G +IGRG HAE+ A+
Sbjct: 11 SNDQYFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 68
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 69 RDAAKALDNYRLPGSTLYVTLEPCSMC 95
>gi|229828779|ref|ZP_04454848.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles
DSM 14600]
gi|229793373|gb|EEP29487.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles
DSM 14600]
Length = 154
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE- 65
M A+R +R + C+I ++G +I RG HAE+ A+++A
Sbjct: 1 MKEAIRQARKA--EAIEEVPIGCVIEREGKIIARGYNRRNIDHSVLKHAEITAIQKACRK 58
Query: 66 ----EARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 LGDWRLEDCTLYVTLEPCQMC 79
>gi|312887290|ref|ZP_07746893.1| Guanine deaminase [Mucilaginibacter paludis DSM 18603]
gi|311300248|gb|EFQ77314.1| Guanine deaminase [Mucilaginibacter paludis DSM 18603]
Length = 170
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVT---AYGGCPHAEV 57
V++ +FM+ A++ S ++ T+ +IVK+G VI G T + HAEV
Sbjct: 5 EVNAEHLKFMNMAVKCSSDNL-KTNLGGPFGAIIVKNGKVIACEGNTVTSSNDPTAHAEV 63
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ A + + G Y + EPC
Sbjct: 64 NAIRAACQALKSPDLEGCIMYTSCEPCPMC 93
>gi|21231608|ref|NP_637525.1| hypothetical protein XCC2169 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768270|ref|YP_243032.1| hypothetical protein XC_1949 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991407|ref|YP_001903417.1| Putative cytidine / deoxycytidylate deaminase family protein
[Xanthomonas campestris pv. campestris str. B100]
gi|21113299|gb|AAM41449.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573602|gb|AAY49012.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733167|emb|CAP51365.1| Putative cytidine / deoxycytidylate deaminase family protein
[Xanthomonas campestris pv. campestris]
Length = 171
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQAL 60
D ++M+ ALR + P V ++V G ++G G ++ HAE+ A+
Sbjct: 16 IDQQWMTHALRLAERAERDYDEIP-VGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAM 74
Query: 61 EE-----AGEEARGATAYVTLEPCSHY 82
E A G T YVTLEPC+
Sbjct: 75 REGGRRLANHRLIGCTLYVTLEPCAMC 101
>gi|134297898|ref|YP_001111394.1| CMP/dCMP deaminase [Desulfotomaculum reducens MI-1]
gi|134050598|gb|ABO48569.1| tRNA-adenosine deaminase [Desulfotomaculum reducens MI-1]
Length = 151
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
A FM AL ++ G + ++V VIGRG HAE+ A+
Sbjct: 3 HALFMREALIEAQKAAVKGEV----PIGAVVVWKDEVIGRGYDLRESLCDASAHAEILAM 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + AT YVT+EPC+
Sbjct: 59 RKAAKHLGDWRLNDATLYVTVEPCAMC 85
>gi|262197671|ref|YP_003268880.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
14365]
gi|262081018|gb|ACY16987.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
14365]
Length = 153
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------- 53
P +S+D FMS AL + V +IV+D ++ G + G P
Sbjct: 8 PRASWDEYFMSIALVVATRSTCHRK---YVGAVIVRDRTILSTGYNGSIRGMPHCTDVGH 64
Query: 54 -----------HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAEV A+ +A + AT YVT PC +
Sbjct: 65 MMEGGHCVATIHAEVNAIIQAAKNGVVIDKATLYVTASPCWNC 107
>gi|171058718|ref|YP_001791067.1| CMP/dCMP deaminase zinc-binding [Leptothrix cholodnii SP-6]
gi|170776163|gb|ACB34302.1| CMP/dCMP deaminase zinc-binding [Leptothrix cholodnii SP-6]
Length = 231
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK---DG-IVIGRGVTAY----GGCP 53
+S D M AL + G V +IV+ DG VI G
Sbjct: 8 TSRDENTMRLALDQALNAHLAGEV----PVGAVIVRHTADGPQVIATGYNRPVTTNDPTA 63
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ AL A Y+TLEPC+
Sbjct: 64 HAELVALRHAATLLENYRLPDCEIYITLEPCAMC 97
>gi|186682609|ref|YP_001865805.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
gi|186465061|gb|ACC80862.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
Length = 141
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM AL ++ + +IVKD V+ HAE+ +
Sbjct: 4 EYFMRLALAQAKEG------DTPYGAVIVKDNEVVAVAHNTVSRDNDPSAHAEINVIRSL 57
Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPP 87
+ + G + Y T EPC +
Sbjct: 58 TAKLKNHFLEGYSIYTTCEPCPMCATACV 86
>gi|88607031|ref|YP_504931.1| cytidine and deoxycytidylate deaminase family protein [Anaplasma
phagocytophilum HZ]
gi|88598094|gb|ABD43564.1| cytidine and deoxycytidylate deaminase family protein [Anaplasma
phagocytophilum HZ]
Length = 147
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
+M A+ + G V L+V++G++I + HAE+ A+ A +
Sbjct: 6 YMKIAMEEANSSSGEI----PVGALVVRNGVIIAKAHNLTIQNTDPTAHAEIVAIRMACK 61
Query: 66 E-----ARGATAYVTLEPCSHY 82
G YVTLEPC+
Sbjct: 62 ALSTHILDGCDIYVTLEPCAMC 83
>gi|55377942|ref|YP_135792.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloarcula
marismortui ATCC 43049]
gi|55230667|gb|AAV46086.1| 25-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Haloarcula marismortui ATCC 43049]
Length = 219
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+ + A+S D + + I+G ++V LRA SDA++VG+GT+LADDP LT
Sbjct: 2 HVIVNAAMSVDGKLSSRRREQIAISGPDDFDRVDQLRADSDAVMVGVGTILADDPSLTVD 61
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP------VIIVTENDDPVLALAFRKKN 264
+ R + ++ DS+I ++ P + +
Sbjct: 62 DADRRAARAERGDPENPARVIADSRIRTPPDATVLDGRAQTYLLVSEAAPPDFIEEMEDA 121
Query: 265 INIIYCDCRDLKKLLTILVGR---GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ +D L T L G+ L+VEGG + S + LVD + +Y VIG
Sbjct: 122 GAYVIAAGQDRVDLTTTLAKLEGDGIDQLMVEGGGELIFSLLEEALVDELFVYVGPKVIG 181
Query: 322 EGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354
P+ + ++F + V L +
Sbjct: 182 GRDAPTLADGDGFIEDFPEPELADVERVDDGVVLHW 217
>gi|331019747|gb|EGH99803.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 169
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V +G +IGRG HAE+ A+
Sbjct: 10 SNDQHFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A G+T YVTLEPCS
Sbjct: 68 RDAARALGNYRLPGSTLYVTLEPCSMC 94
>gi|324992584|gb|EGC24505.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK405]
Length = 156
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
G T +VT+EPC
Sbjct: 68 NRHENSWRLLGTTLFVTIEPCVMCS 92
>gi|322386624|ref|ZP_08060249.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
51100]
gi|321269297|gb|EFX52232.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC
51100]
Length = 166
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 20 EMFMREALKEAEIAL--ANDEIPIGCVLVKNGQIIGRGHNAREELQRAVMHAEIMAIEEA 77
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ T +VT+EPC
Sbjct: 78 NQHENSWRLLDTTLFVTIEPCVMCS 102
>gi|222152093|ref|YP_002561253.1| hypothetical protein MCCL_1850 [Macrococcus caseolyticus
JCSC5402]
gi|222121222|dbj|BAH18557.1| conserved hypothetical protein [Macrococcus caseolyticus
JCSC5402]
Length = 161
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
FM A+ ++ + P + +++K G VIGRG HAEV A+ E
Sbjct: 3 HEIFMQMAIDEAKKA-YKINEVP-IGAVVIKHGEVIGRGHNLRESSQNPLMHAEVVAINE 60
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
A + YVTLEPC + ++
Sbjct: 61 ASKNIGSWRLEECVLYVTLEPCVMCSGAIVMSR 93
>gi|330872834|gb|EGH06983.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 169
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V++G +IGRG HAE+ A+
Sbjct: 10 SNDQHFMRE--ALALAAQGALLGEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 68 RDAAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|71902073|ref|ZP_00684112.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Ann-1]
gi|71728165|gb|EAO30357.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella
fastidiosa Ann-1]
Length = 203
Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
PV +M AL + P V +++ +G ++G G T++ HAE
Sbjct: 44 PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 102
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL AG + R G T YVTLEPC
Sbjct: 103 IMALRAAGHQLRNHRMPGCTLYVTLEPCLMC 133
>gi|300865868|ref|ZP_07110611.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
gi|300336131|emb|CBN55769.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506]
Length = 169
Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
++MS A++ ++ G P V IV G +I +G HAE+ AL A
Sbjct: 20 QWMSRAIKLAQEA-GEAGEVP-VGAAIVDSQGKLIAQGQNRRERDCDPTAHAEILALRGA 77
Query: 64 GEEARG-----ATAYVTLEPCSHY 82
G + T YVTLEPC
Sbjct: 78 GIALQNWHLNACTLYVTLEPCPMC 101
>gi|323465896|gb|ADX69583.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Lactobacillus helveticus H10]
gi|328462872|gb|EGF34721.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Lactobacillus helveticus MTCC 5463]
Length = 168
Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S+ ++M A+ ++ G + ++V +G VIG G
Sbjct: 1 MLSSADKKKYMELAIDQAKEAEKQGEV----PIGAVVVDPEGKVIGTGYNRRELDEDSTQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + +VTLEPC
Sbjct: 57 HAEMIAIKEACHNLGMWRLIDCSLFVTLEPCPMC 90
>gi|260773318|ref|ZP_05882234.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
69.14]
gi|260612457|gb|EEX37660.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP
69.14]
Length = 165
Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V ++VKDG VI G G HAE+Q L +AG+ + T YVTLEPC
Sbjct: 18 PVGAVLVKDGQVIAEGWNRSIGGHDATAHAEIQVLRQAGQALQNYRLLDTTLYVTLEPCP 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|86749931|ref|YP_486427.1| twin-arginine translocation pathway signal [Rhodopseudomonas
palustris HaA2]
gi|86572959|gb|ABD07516.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris HaA2]
Length = 176
Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 10/159 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVT---AYGGCPHAEVQ 58
++ D + M+ A+ R + T + +IV+DG V+ G + HAEV
Sbjct: 19 ITEQDRQHMTQAIALMRKAGVVEKTGGAFGAVIVRDGEVLAATGNSVLRDNDPSAHAEVN 78
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A ++ RGAT Y + E C + + D +
Sbjct: 79 AIRAACKKVGAPNLRGATMYTSCECCPMC-YATAYWARLDRIFFAASWTDYADLFDDSNI 137
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
V R + R+
Sbjct: 138 GADMKNPYAKRKVRIAQMMRSDAQKVWQEFRTLPDRARY 176
>gi|311742000|ref|ZP_07715810.1| cytidine and deoxycytidylate deaminase [Aeromicrobium marinum DSM
15272]
gi|311314493|gb|EFQ84400.1| cytidine and deoxycytidylate deaminase [Aeromicrobium marinum DSM
15272]
Length = 149
Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--AYGGCP--HAEVQALEEAGE 65
M AL +R + T P V +++ G VIGRG G P HAEV AL EA E
Sbjct: 7 MRLALEEARAAL-DTGDVP-VGAVVLDPAGDVIGRGRNTRERDGDPLGHAEVVALREAAE 64
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 65 RTGQWRLEGCTLVVTLEPCTMC 86
>gi|294630214|ref|ZP_06708774.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. e14]
gi|292833547|gb|EFF91896.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. e14]
Length = 142
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL +R V G V +++ DG V+G G HAEV A+ A
Sbjct: 1 MRLALAEARRAVEGGDV----PVGAVVLSADGAVLGAGHNEREATGDPTAHAEVLAIRRA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E G T VTLEPC+
Sbjct: 57 AERVGEWRLSGCTLVVTLEPCTMC 80
>gi|54294609|ref|YP_127024.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
gi|53754441|emb|CAH15925.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens]
Length = 149
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
D +M A + + G V ++V KD ++G G ++ HAE++
Sbjct: 4 IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 59
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 60 AIRQASRKLNNHRLLDTTLYVTLEPCVMC 88
>gi|238895863|ref|YP_002920599.1| putative adenosine deaminase [Klebsiella pneumoniae NTUH-K2044]
gi|238548181|dbj|BAH64532.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 154
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAE 56
M +S+ D R++ AL ++ ++ ++V++ ++ + HAE
Sbjct: 1 MTMSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGDPTAHAE 57
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
+ A+ + R Y + +PC
Sbjct: 58 LNAVRDLAARLGSAVLRECVIYASGQPCPMC 88
>gi|307610417|emb|CBW99987.1| hypothetical protein LPW_17441 [Legionella pneumophila 130b]
Length = 147
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
D +M A + + G V ++V KD ++G G ++ HAE++
Sbjct: 2 IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 57
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 58 AIRQASRKLNNHRLLDTTLYVTLEPCVMC 86
>gi|28868664|ref|NP_791283.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213972056|ref|ZP_03400150.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato T1]
gi|301385879|ref|ZP_07234297.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302063770|ref|ZP_07255311.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato K40]
gi|302132520|ref|ZP_07258510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|28851903|gb|AAO54978.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213923189|gb|EEB56790.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tomato T1]
Length = 169
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V +G +IGRG HAE+ A+
Sbjct: 10 SNDQHFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A G+T YVTLEPCS
Sbjct: 68 RDAARALGNYRLPGSTLYVTLEPCSMC 94
>gi|37520622|ref|NP_923999.1| putative cytidine and deoxycytidylate deaminase [Gloeobacter
violaceus PCC 7421]
gi|35211616|dbj|BAC88994.1| gll1053 [Gloeobacter violaceus PCC 7421]
Length = 150
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
+ +M AL +R G P V L+V G+++ G HAE+ A+
Sbjct: 4 HSEWMGMALELAREA-GRVGEVP-VGALVVDASGVLLATGANRRERDYDPTAHAEIVAMR 61
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
A + R T YVTLEPC+
Sbjct: 62 AACAKLRDWRLTDCTLYVTLEPCAMC 87
>gi|312129827|ref|YP_003997167.1| cmp/dcmp deaminase zinc-binding protein [Leadbetterella
byssophila DSM 17132]
gi|311906373|gb|ADQ16814.1| CMP/dCMP deaminase zinc-binding protein [Leadbetterella
byssophila DSM 17132]
Length = 168
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM A+ S + + C+IV++G +IG G H E+ A+E A
Sbjct: 13 FMLKAIELSEIA-YKSGKGLPIGCVIVRNGEIIGEGHNEIFERVNPTSHGEMVAIERACR 71
Query: 66 E-----ARGATAYVTLEPCSHY 82
Y TLEPC
Sbjct: 72 NINSLQLSECQMYTTLEPCPMC 93
>gi|182418731|ref|ZP_02950004.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
gi|237669698|ref|ZP_04529675.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377425|gb|EDT74981.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521]
gi|237654772|gb|EEP52335.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 149
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
F+ A + G V +IVKDG++IGRG HAE+ A++EA
Sbjct: 3 FIDEAKAEAIKAYDKGEI----PVGAVIVKDGVIIGRGHNLKETLNDVTAHAEILAIKEA 58
Query: 64 GE-----EARGATAYVTLEPCSHY 82
GA YVTLEPC
Sbjct: 59 SNNLGDWRLDGAEMYVTLEPCPMC 82
>gi|328676234|gb|AEB27104.1| tRNA-specific adenosine-34 deaminase [Francisella cf. novicida
Fx1]
Length = 153
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIAQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAE+ L A + YVTLEPC
Sbjct: 57 HAEILVLRSAALKLDNYRLVNTKLYVTLEPCIMC 90
>gi|257453281|ref|ZP_05618580.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
gi|257467124|ref|ZP_05631435.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
gi|315918255|ref|ZP_07914495.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059814|ref|ZP_07924299.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
gi|313685490|gb|EFS22325.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R]
gi|313692130|gb|EFS28965.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563]
Length = 160
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 29/109 (26%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M +D FM AL + N V IV D +IG G
Sbjct: 1 MKRKDYITWDEYFMGVALLSAMRSK---DPNTQVGACIVSPDKKIIGLGYNGLPKGCEDD 57
Query: 48 ----AYGGC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + T YV L PC
Sbjct: 58 EFPWEREGEFLETKYPYVCHAELNAILNSTQSLKNCTIYVALFPCHECS 106
>gi|170017868|ref|YP_001728787.1| cytosine/adenosine deaminase [Leuconostoc citreum KM20]
gi|169804725|gb|ACA83343.1| Cytosine/adenosine deaminase [Leuconostoc citreum KM20]
Length = 169
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL + G + +IVK+ +I + HAE+ A+E+
Sbjct: 14 YFMQVALNEASIAFNEGEV----PIGAVIVKNNQIIAKAHNHREAEQLATAHAELMAIEK 69
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A +VTLEPC
Sbjct: 70 ANLKLKSWRLENTALFVTLEPCVMC 94
>gi|300172664|ref|YP_003771829.1| tRNA-specific adenosine deaminase [Leuconostoc gasicomitatum LMG
18811]
gi|299887042|emb|CBL91010.1| tRNA-specific adenosine deaminase [Leuconostoc gasicomitatum LMG
18811]
Length = 165
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL +++ G + +IVKD ++I R HAE+ A+E
Sbjct: 14 YFMQVALNEAKFAENDGEV----PIGAVIVKDNVIIARAHNHREAEQMATAHAELLAIES 69
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A +VTLEPC
Sbjct: 70 ANRLLSSWRLEDTALFVTLEPCIMC 94
>gi|161506947|ref|YP_001576901.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Lactobacillus helveticus DPC 4571]
gi|160347936|gb|ABX26610.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Lactobacillus helveticus DPC 4571]
Length = 168
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S+ ++M A+ ++ G + ++V +G VIG G
Sbjct: 1 MLSSADKKKYMELAIDQAKEAEKQGEV----PIGAVVVDPEGKVIGTGYNRRELDEDSTQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + +VTLEPC
Sbjct: 57 HAEMIAIKEACHNLGMWRLIDCSLFVTLEPCPMC 90
>gi|309778050|ref|ZP_07672990.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
3_1_53]
gi|308914187|gb|EFP59987.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
3_1_53]
Length = 164
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA-YGGCP--------- 53
++D FM A ++ + V +IV D V+ G GC
Sbjct: 8 TWDEYFMGLAHLSAKRSK---DPSTQVGAVIVSDEHRVVSIGYNGFPNGCSDDEFPWDRE 64
Query: 54 ------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV+L PC+
Sbjct: 65 GEFGNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNEC 105
>gi|147921095|ref|YP_685094.1| dCMP deaminase [uncultured methanogenic archaeon RC-I]
gi|110620490|emb|CAJ35768.1| dCMP deaminase [uncultured methanogenic archaeon RC-I]
Length = 167
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 35/115 (30%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S D FM A S+ T V +IVK+G +I G
Sbjct: 1 MSRPSKDEYFMEIAQVVSKRS---TCLRLHVGAVIVKNGQIISTGYNGAPHGFDHCLDIG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GA Y T +PC +
Sbjct: 58 CIRENQNIAHGTRHELCRAVHAEQNAIIQAAIHGASIEGAAVYCTHQPCILCTKM 112
>gi|148359260|ref|YP_001250467.1| deaminase [Legionella pneumophila str. Corby]
gi|296107307|ref|YP_003619007.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99
Alcoy]
gi|148281033|gb|ABQ55121.1| deaminase [Legionella pneumophila str. Corby]
gi|295649208|gb|ADG25055.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99
Alcoy]
Length = 147
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
D +M A + + G V ++V KD ++G G ++ HAE++
Sbjct: 2 IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 57
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 58 AIRQASRKLNNHRLLDTTLYVTLEPCVMC 86
>gi|282858963|ref|ZP_06268101.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella bivia JCVIHMP010]
gi|282588243|gb|EFB93410.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella bivia JCVIHMP010]
Length = 150
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M AL ++ P + ++V +I R T + HAE+QA+
Sbjct: 8 KKDIYYMQRALDEAKQA-YKEGEIP-IGAIVVCKNKIIARAHNLTETLHDVTAHAEMQAI 65
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC
Sbjct: 66 TIAANELGGKYLEDCTLYVTVEPCIMC 92
>gi|169633781|ref|YP_001707517.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
SDF]
gi|169152573|emb|CAP01555.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter
baumannii]
Length = 160
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|25027973|ref|NP_738027.1| hypothetical protein CE1417 [Corynebacterium efficiens YS-314]
gi|23493256|dbj|BAC18227.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 157
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M ++ F+ A+ SR + +I + +I HAE
Sbjct: 1 MTMNPN---FLHRAVELSRRGM-EAGQGGPFGAVIARGDRIIAEAYNTVLATKDPTNHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A + G YV +PC
Sbjct: 57 IVAIRSAARVLGTVDLTGCELYVNAQPCPMC 87
>gi|332876785|ref|ZP_08444543.1| guanine deaminase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685344|gb|EGJ58183.1| guanine deaminase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 155
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
FM A+ S + G +IVK ++ GV HAEV A
Sbjct: 4 KEFMRKAIELSVENVKNGGG------PFGAVIVKGDEIVATGVNRVTAHNDPTAHAEVSA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ EA G Y + EPC
Sbjct: 58 IREACRRLGTFDLSGCEIYTSCEPCPMC 85
>gi|148264239|ref|YP_001230945.1| dCMP deaminase [Geobacter uraniireducens Rf4]
gi|146397739|gb|ABQ26372.1| dCMP deaminase [Geobacter uraniireducens Rf4]
Length = 156
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D FM ++ T V +IVKD ++ G
Sbjct: 1 MSRPSWDEYFMEITHLVAKRS---TCLRRQVGAVIVKDKNILATGYNGAPSGVSHCLDVG 57
Query: 47 -------------TAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRS 85
HAE A+ +A + G+T Y T PC +
Sbjct: 58 CLREKLNIPSGERHELCRGLHAEQNAIIQAAKHGTTIDGSTLYCTTLPCIICSKM 112
>gi|323343460|ref|ZP_08083687.1| guanine deaminase [Prevotella oralis ATCC 33269]
gi|323095279|gb|EFZ37853.1| guanine deaminase [Prevotella oralis ATCC 33269]
Length = 156
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + M A+ S V ++ ++G +I + HAE
Sbjct: 2 MKQTDL----MRRAIALSEQSVRNGGG--PFGAVVARNGEIIAEASNRVTIDHDPTAHAE 55
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V A+ +A + G Y + EPC
Sbjct: 56 VNAIRKAARELDTFDLSGCDIYTSCEPCPMC 86
>gi|257076159|ref|ZP_05570520.1| deaminase [Ferroplasma acidarmanus fer1]
Length = 172
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 33/116 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
S+D FM A + V +IV+D V+ G
Sbjct: 6 KRPSWDEYFMRMAYLAASRSNCTRRK---VGAVIVRDNNVLATGYNGPPSHTVNCDIVGC 62
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE A+ +A G +G+ YVT PC +
Sbjct: 63 IRDELNVPSGERHELCRGLHAEQNAIIQAAVNGSSIKGSKIYVTTHPCVVCSKMIM 118
>gi|324529700|gb|ADY49034.1| Guanine deaminase [Ascaris suum]
Length = 153
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
FM A+ + V P +IV++ +I G HAE+ A+ A
Sbjct: 3 FMRKAIDEACQGVDNGDGGP-FGAVIVRNNSIIATGHNMVLKTNDPTAHAEITAIRNACS 61
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 62 ALGTFDLSGCQLYTSCYPCPMC 83
>gi|156564196|ref|YP_001429706.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
gi|154622893|gb|ABS83773.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36]
Length = 255
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 25/105 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
+D F+ AL + T + V C++VK+ VI G + G P
Sbjct: 115 PWDQYFIEQALHVAERG---TCSRARVGCVLVKENRVIATGYNGSPKGMPHCDDIGHLMK 171
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE AL + G + GATAYVT EPC + R
Sbjct: 172 DGHCVRTNHAEENALLQCARLGISSEGATAYVTHEPCLYCTRQLN 216
>gi|332185526|ref|ZP_08387274.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Sphingomonas sp. S17]
gi|332014504|gb|EGI56561.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Sphingomonas sp. S17]
Length = 142
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL +R G V +IV+ G V+ A HAE+QA+ A
Sbjct: 1 MRLALDAARRAGEEGEV----PVGAVIVRHGQVVSVAANAPRRLHDPTAHAEIQAIRAAA 56
Query: 65 -----EEARGATAYVTLEPCSHY 82
E +VTLEPC+
Sbjct: 57 EKLGRERLEECDLWVTLEPCAMC 79
>gi|298368702|ref|ZP_06980020.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
str. F0314]
gi|298282705|gb|EFI24192.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014
str. F0314]
Length = 241
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM AL + G V +VK+G VI + HAE+ AL
Sbjct: 93 EIFMRIALEQAVQSAAAGEI----PVGAAVVKNGSVIAAAHNTCIQSRDVSRHAEISALA 148
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+AG G YVTLEPC+
Sbjct: 149 QAGAVLGNYRLDGCDVYVTLEPCAMC 174
>gi|260555502|ref|ZP_05827723.1| guanine deaminase [Acinetobacter baumannii ATCC 19606]
gi|260412044|gb|EEX05341.1| guanine deaminase [Acinetobacter baumannii ATCC 19606]
Length = 160
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|256390088|ref|YP_003111652.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256356314|gb|ACU69811.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 230
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 13/226 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ +R H+ L A+S D + + ++ ++V LRA SDAI+VG T+ DDP
Sbjct: 1 MPERPHVILSAAMSLDGHLDDTTPDRLMLSDDADFDRVDALRAASDAIMVGAETIRRDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKL--------SLDSKIIKTALLAPVIIVTE-NDDPVL 256
L R + R + + K+ +++ T V
Sbjct: 61 RLVIRDPERRADRVRRGLAEHPVKVTVTGAGALDPEARFFTTGGHKLVYCADAAVPTQAD 120
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
LA + D +L L RG+ L+VEGG+++ F+ L D I L +
Sbjct: 121 RLATVPDTEVVAAGALVDFPGILADLKRRGIERLMVEGGSSLHTRFLAEDLADEIHLAIA 180
Query: 317 QIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKN 358
+G+ P + +N G V + Y+ ++
Sbjct: 181 PFFVGDDQAPRFVRAAEFPQNARHRMTLAETRPIGDLVFVRYVIES 226
>gi|332666401|ref|YP_004449189.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
hydrossis DSM 1100]
gi|332335215|gb|AEE52316.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 148
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D FM AL+ ++ P V +I + +I RG HAE+ ++
Sbjct: 7 DEYFMQEALKEAQLA-FEEGEIP-VGAVIACENRIIARGHNTTEKLLDVTAHAEILSITA 64
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A T YVTLEPC+
Sbjct: 65 ASNYLNSKYLPDCTLYVTLEPCNMC 89
>gi|237800069|ref|ZP_04588530.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|237806398|ref|ZP_04593102.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022924|gb|EGI02981.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027511|gb|EGI07566.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V +G +IGRG HAE+ A+
Sbjct: 10 SNDQYFMRE--ALALAAQGALLGEVPVGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
E+ + G+T YVTLEPCS
Sbjct: 68 RESAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|282897517|ref|ZP_06305518.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
[Raphidiopsis brookii D9]
gi|281197612|gb|EFA72507.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
[Raphidiopsis brookii D9]
Length = 185
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAE 56
+ + +MS AL+ ++ G P V C+IV G +IG+G HAE
Sbjct: 12 SLIKYHQGWMSEALKLAQIA-GDAGEVP-VGCIIVNSQGDLIGQGENRKQRDQDPTAHAE 69
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ A+ A + T YVTLEPC
Sbjct: 70 IVAIRSAARTLQNWHLDQCTLYVTLEPCPMC 100
>gi|295132290|ref|YP_003582966.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
profunda SM-A87]
gi|294980305|gb|ADF50770.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
profunda SM-A87]
Length = 149
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM A ++ G V ++V +I RG T HAE+Q+
Sbjct: 6 DDTYFMKKAFEEAQIAFEKGEI----PVGVVVVIKNRIIARGHNLTETLNDVTAHAEMQS 61
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ +G T YVTLEPC
Sbjct: 62 ITAAASFLGGKYLKGCTMYVTLEPCQMC 89
>gi|37523103|ref|NP_926480.1| riboflavin-specific deaminase [Gloeobacter violaceus PCC 7421]
gi|35214106|dbj|BAC91475.1| riboflavin-specific deaminase [Gloeobacter violaceus PCC 7421]
Length = 232
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 5/172 (2%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TEND 252
+ G ++D + R Q P+ ++ L D + ++
Sbjct: 60 IEGQTYTVSDPQWIAARQARGQPPQPITCVVSRSLDLPPDLPFFAQPIERWILTTEQAVA 119
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ + D ++ RG+ + GG + + + + +D +
Sbjct: 120 RSPHPRLAELATLVAAGENELDWERAYAFFAERGIGRVAALGGGDLVAALLAAGRIDDLW 179
Query: 313 LYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360
L ++ G +P+E E V D+ L Y C
Sbjct: 180 LTVWPVIFGGREATTPVEGAGFEPLKAPALELVELRQTAGDLFLHYRVIKPC 231
>gi|158314624|ref|YP_001507132.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
gi|158110029|gb|ABW12226.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
Length = 150
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-HAEVQ 58
MP D +M+ A+ + T SV +IV + I G + HAE
Sbjct: 1 MPQLD-DHHWMTRAIELAHRCPPATGA-YSVGAVIVDENNEEIAFGFSREVDDAVHAEES 58
Query: 59 ALEE---AGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SG 113
AL + A AT Y TLEPC R C Q I+E I RVV+ +P + V
Sbjct: 59 ALAKIDPADPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSLFVADC 118
Query: 114 RGLQWLSQKGIIV 126
+G + L+Q G+ V
Sbjct: 119 QGYELLTQAGVTV 131
>gi|281421269|ref|ZP_06252268.1| tRNA-specific adenosine deaminase [Prevotella copri DSM 18205]
gi|281404804|gb|EFB35484.1| tRNA-specific adenosine deaminase [Prevotella copri DSM 18205]
Length = 148
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ D +M AL ++ V +IV +I R HAE+Q
Sbjct: 4 IKKKDEAYMRRALMEAQAAFDEDEI--PVGAIIVCKDRIISRAHNLTEMLTDVTAHAEMQ 61
Query: 59 ALEE-----AGEEARGATAYVTLEPCSHY 82
A+ G+ + T YVT+EPC
Sbjct: 62 AITSGANMLGGKYLKDCTLYVTVEPCVMC 90
>gi|167574216|ref|ZP_02367090.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
C6786]
Length = 131
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EE 331
+L +L RG+ L VE G + S + R VD +++Y + ++G
Sbjct: 35 PAMLAMLGERGINELHVEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFEVAAPPS 94
Query: 332 GYLEKNFMCVRRDYFGSDVCL 352
+ G D+ +
Sbjct: 95 LADRTRLAFHSVERVGDDLRI 115
>gi|116511524|ref|YP_808740.1| hypothetical protein LACR_0760 [Lactococcus lactis subsp.
cremoris SK11]
gi|116107178|gb|ABJ72318.1| tRNA-adenosine deaminase [Lactococcus lactis subsp. cremoris
SK11]
Length = 155
Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HA 55
M + + FM+ AL+ ++ + +IVKDG +I R G HA
Sbjct: 1 MNFTEEEKEFFMTEALKEAQKAAEN--EEVPIGVVIVKDGEIIARDFNRRELDGRATHHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+E A + +VT+EPC
Sbjct: 59 EVCAIEAANQAVGNWRLLDCALFVTIEPCVMC 90
>gi|66044515|ref|YP_234356.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. syringae B728a]
gi|63255222|gb|AAY36318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. syringae B728a]
Length = 169
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A + G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|294101414|ref|YP_003553272.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
DSM 12261]
gi|293616394|gb|ADE56548.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense
DSM 12261]
Length = 168
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 35/114 (30%)
Query: 1 MPV--SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------ 46
M +D+ FM A + L V +IV+D +I G
Sbjct: 1 MTFIRPDWDSYFMMIAAVAATRGTCLRRK---VGAVIVRDLQIISTGYNGAPKGLPHCSE 57
Query: 47 ---------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G GA Y T EPCS
Sbjct: 58 VGCLRDKLGIPSGERHEICRGSHAEINAIAQAAAVGTRTEGAVLYCTHEPCSFC 111
>gi|300711247|ref|YP_003737061.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
jeotgali B3]
gi|299124930|gb|ADJ15269.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus
jeotgali B3]
Length = 218
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 11/214 (5%)
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC---- 209
+ A S D + + I+G ++V LRA+SDA++VG+GTVLADDP LT
Sbjct: 5 VNAATSADGKLSNRRREQIAISGPDDFDRVDDLRAESDAVMVGVGTVLADDPHLTVDEST 64
Query: 210 ---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNI 265
R + P R++ D + D++I+ +++ L + +
Sbjct: 65 SAVRTERGEPPQPARVVADSRARTPPDARILDGVARTYLLVSEAAPTERVERLEAQDARV 124
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ D DL+ L G+ LLVEGG + S + LVD + ++ +IG
Sbjct: 125 ITVGDDRVDLEDGFETLATEGIDRLLVEGGGELIFSLFEADLVDELSVFVGPTIIGGREA 184
Query: 326 PSPLEEGYLEKNF---MCVRRDYFGSDVCLEYIG 356
P+ + + F + V L +
Sbjct: 185 PTLADGDGFVEGFPELSLESVERLDRGVVLRWRV 218
>gi|254293360|ref|YP_003059383.1| CMP/dCMP deaminase zinc-binding [Hirschia baltica ATCC 49814]
gi|254041891|gb|ACT58686.1| CMP/dCMP deaminase zinc-binding [Hirschia baltica ATCC 49814]
Length = 154
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 49/140 (35%), Gaps = 23/140 (16%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEVQALE 61
+M+ A++ + G V +IV G ++G G G HAE+ A+
Sbjct: 9 YMARAMQLAEEAALAGEV----PVGAVIVDPSTGNIVGEGRNGPIGAHDPTAHAEIVAIR 64
Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A YVTLEPC CA I I +VV DDP G
Sbjct: 65 NACASVDNYRLPDLELYVTLEPC------AMCAGAISFARIGKVVFAADDPKGGAIKHGP 118
Query: 117 QWLSQKGIIVDRMMESEGKI 136
++ Q E + +
Sbjct: 119 KFFEQSTCHWRSQWEQDIRF 138
>gi|39995176|ref|NP_951127.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
sulfurreducens PCA]
gi|39981938|gb|AAR33400.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
sulfurreducens PCA]
gi|307634647|gb|ADI82903.2| tRNA (adenosine-34) deaminase [Geobacter sulfurreducens KN400]
Length = 179
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ +IV+DG VIGRG G HAE+ A+ +A GAT YVTLEPC
Sbjct: 33 PIGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRSANWRLTGATLYVTLEPCL 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|127512238|ref|YP_001093435.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
gi|126637533|gb|ABO23176.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
Length = 273
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEE-- 66
+M A+ R G P V +IV G VI G G HAE A+EEA E+
Sbjct: 9 YMKQAVDQMRMSEGK---GPKVGAVIVTKGHQVIA-G-HKKNGT-HAERAAIEEAQEKKI 62
Query: 67 -ARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
RGAT Y TLEPC G C+ I GI+ V + DP+ + G + L +G
Sbjct: 63 DLRGATLYSTLEPCVSVGSKKEACSDLISRVGIKTVYIGRYDPNPNIQRLGWKKLRDEG 121
>gi|323143534|ref|ZP_08078213.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Succinatimonas hippei YIT 12066]
gi|322416695|gb|EFY07350.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Succinatimonas hippei YIT 12066]
Length = 175
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQA 59
D FMS AL +R +G V +IV ++ G C HAE+ A
Sbjct: 6 DEYFMSLALSQARHAWDLGEI----PVGAVIVNAAKEIVSVGCNRTIIDNDPCAHAEIVA 61
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG 83
L AG+ T YVTLEPC
Sbjct: 62 LRNAGKILDTYRLTDLTMYVTLEPCCMCS 90
>gi|146299285|ref|YP_001193876.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae
UW101]
gi|146153703|gb|ABQ04557.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae
UW101]
Length = 147
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M D FM AL+ + P V +IV VI R HAE
Sbjct: 1 MINPFTDEYFMKKALQEAEIA-YEKGEIP-VGAIIVVADKVIARSHNLTELLNDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+Q++ A G+ + T YVTLEPC
Sbjct: 59 MQSITAAANFLGGKYLKDCTLYVTLEPCQMC 89
>gi|15964553|ref|NP_384906.1| putative deaminase protein [Sinorhizobium meliloti 1021]
gi|307314743|ref|ZP_07594339.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
gi|307320037|ref|ZP_07599458.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
gi|15073731|emb|CAC45372.1| Putative tRNA-specific adenosine deaminase [Sinorhizobium
meliloti 1021]
gi|306894252|gb|EFN25017.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
gi|306898967|gb|EFN29613.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C]
Length = 149
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
RFM AAL+ +R G + ++V DG +I HAE++A+
Sbjct: 6 RFMQAALQEARKAAARGEV----PIGAVVVLDGKMIAAAGNRTRELNDITAHAEIEAIRH 61
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A E GA YVTLEPC+
Sbjct: 62 AAAAVGDERLSGADLYVTLEPCTMC 86
>gi|298207416|ref|YP_003715595.1| putative cytosine/adenosine deaminase [Croceibacter atlanticus
HTCC2559]
gi|83850052|gb|EAP87920.1| putative cytosine/adenosine deaminase [Croceibacter atlanticus
HTCC2559]
Length = 149
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M D FM AL + P V ++V + +I R HAE
Sbjct: 1 MLQPFDDTYFMKKALLEAEEA-YEKGEIP-VGAIVVANNTIIARSHNLTELLNDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+Q + A G+ T YVTLEPC
Sbjct: 59 MQVITSAANHIGGKYLTDCTLYVTLEPCQMC 89
>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
Length = 514
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
R+M+ AL +R G V ++V V R HAE+ L
Sbjct: 380 ERYMALALEEARQAFQEGEV----PVGAVLVVGERVY-RAHNQVEATRDPTAHAEMLLLR 434
Query: 62 EAGEEARGATAYVTLEPCSHYGR 84
E G ARG YVTLEPC
Sbjct: 435 EVGRGARGGRLYVTLEPCRMCHH 457
>gi|294055974|ref|YP_003549632.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615307|gb|ADE55462.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 169
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 26/105 (24%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAY-GGCPH 54
M S+DA FM+ AL + V C+IV G +I G + G PH
Sbjct: 30 MSTRPSWDAYFMATALLMASRSSCERLH---VGCVIVSGGRQKNRIIAAGYNGFLPGSPH 86
Query: 55 --------------AEVQALEEA---GEEARGATAYVTLEPCSHY 82
AE A+ +A G GAT Y+T PC +
Sbjct: 87 QSRVRDGHEQATVHAEQNAIADAARRGVSLEGATVYITHYPCINC 131
>gi|15834852|ref|NP_296611.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum Nigg]
gi|301336416|ref|ZP_07224618.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum MopnTet14]
gi|8163170|gb|AAF73539.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum Nigg]
Length = 157
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D FM AL +R P V C+IV+ +I RG + HAE+ +
Sbjct: 4 EKDLFFMKKALDEARKA-YELDEVP-VGCIIVQGDAIIARGHNSVERLKDPTAHAEMICI 61
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A E + T Y TLEPC
Sbjct: 62 SAAAEYLQNWRLKDTTLYCTLEPCLMC 88
>gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica]
gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica]
Length = 605
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL-- 60
S +FM A+ + G T + V ++VKDG V+ G + G HAE AL
Sbjct: 454 SQPHKKFMDLAVAEADKSEG-TPSAFCVGAVLVKDGQVLETGFSRELPGNTHAEQCALEK 512
Query: 61 ----EEAGEEARGATAYVTLEPC 79
+ Y T+EPC
Sbjct: 513 YFAKNNVSDVPENTVIYTTMEPC 535
>gi|332360091|gb|EGJ37905.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
SK1056]
Length = 156
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|324995886|gb|EGC27797.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK678]
gi|325695392|gb|EGD37292.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK150]
gi|327488579|gb|EGF20379.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
SK1058]
gi|328944679|gb|EGG38840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
SK1087]
Length = 156
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|256827973|ref|YP_003156701.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
4028]
gi|256577149|gb|ACU88285.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
4028]
Length = 190
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAG 64
FM AL+ + G + V ++V +G ++GRG HAE+ AL +AG
Sbjct: 35 FMCEALQLAGLAEGR--GDVPVGAVVVDGNGRILGRGENRTIFENDPTAHAEILALRQAG 92
Query: 65 -----EEARGATAYVTLEPCSHY 82
A VTLEPC
Sbjct: 93 AKVGNHRLTDAVLVVTLEPCIMC 115
>gi|327481727|gb|AEA85037.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri DSM
4166]
Length = 160
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
S D RFM + G V ++V +G ++GRG + HAE+ A+
Sbjct: 10 SQDERFMRE--AMALAAQGAALGEVPVGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + G+T YVTLEPCS
Sbjct: 68 RAAAQALQNYRLPGSTLYVTLEPCSMC 94
>gi|291084824|ref|ZP_06542690.2| tRNA-specific adenosine deaminase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 76
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
+M AL ++ V ++V + VIG G G HAE+ AL
Sbjct: 7 DHEYWMRHALTLAKRAWDEREV--PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALR 64
Query: 62 EAGEEARGATA 72
+ G +
Sbjct: 65 QGGLVLQNYRL 75
>gi|198276275|ref|ZP_03208806.1| hypothetical protein BACPLE_02467 [Bacteroides plebeius DSM
17135]
gi|198270717|gb|EDY94987.1| hypothetical protein BACPLE_02467 [Bacteroides plebeius DSM
17135]
Length = 155
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S +V +I KDG ++ GV HAEV A+ A
Sbjct: 4 EELMRKAIELSVKNVAEGGG--PFGAVIAKDGEIVATGVNRVTPDCDPTAHAEVSAIRAA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
++ G Y + EPC
Sbjct: 62 AKKLGTFDLSGCEIYTSCEPCPMC 85
>gi|89053709|ref|YP_509160.1| CMP/dCMP deaminase, zinc-binding [Jannaschia sp. CCS1]
gi|88863258|gb|ABD54135.1| CMP/dCMP deaminase zinc-binding protein [Jannaschia sp. CCS1]
Length = 142
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M AAL +R G V +I ++G +I R + HAE+ A+ A
Sbjct: 1 MEAALDQARQAAARGEV----PVGAVISRNGEIIARAGNRTREDHDPTGHAEILAIRSAC 56
Query: 65 -----EEARGATAYVTLEPCSHY 82
E G +VTLEPC
Sbjct: 57 AALQSERLPGCDLWVTLEPCPAC 79
>gi|294012909|ref|YP_003546369.1| putative deaminase [Sphingobium japonicum UT26S]
gi|292676239|dbj|BAI97757.1| putative deaminase [Sphingobium japonicum UT26S]
Length = 156
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M AL + G P + ++ DG IG G HAE+ A+ A
Sbjct: 15 MRRALELA-RAAGEAGEVP-IGAVVTLDGRTIGEGENRNRRDNDPTAHAEMVAIRAAAAH 72
Query: 66 ----EARGATAYVTLEPCSHY 82
G +VTLEPC+
Sbjct: 73 LGDFRLAGCDLWVTLEPCAMC 93
>gi|224367573|ref|YP_002601736.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
autotrophicum HRM2]
gi|223690289|gb|ACN13572.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium
autotrophicum HRM2]
Length = 181
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP- 53
M + DA +M AL ++ G V +IV DG V+ +G G P
Sbjct: 4 MIETLNDAYYMELALASAQKAFDQGE----FPVGAVIVCDGRVVAQGHRVGTGALTGRPS 59
Query: 54 ---HAEVQALEE-----AGEEARGATAYVTLEPCSHY 82
HAE++AL+E G + GA + T+EPC
Sbjct: 60 EIDHAEMRALKELEGLPLGFDPAGAVIFSTMEPCLMC 96
>gi|160914266|ref|ZP_02076487.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
gi|158433893|gb|EDP12182.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991]
Length = 170
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 29/108 (26%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA-YGGCP-- 53
M S +D FM A ++ N V IV D V+ G GC
Sbjct: 10 MKRSDVLTWDEYFMGLAHLSAKRSK---DPNTQVGAAIVNDQHKVVSIGYNGFPNGCHDD 66
Query: 54 -------------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + +G + YV+L PC+
Sbjct: 67 DFPWEREGDFCATKYPYVVHAELNAILNSSTNLQGCSIYVSLFPCNEC 114
>gi|298488260|ref|ZP_07006293.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157199|gb|EFH98286.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 169
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLSGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|332874597|ref|ZP_08442498.1| putative guanine deaminase [Acinetobacter baumannii 6014059]
gi|322507943|gb|ADX03397.1| guaD [Acinetobacter baumannii 1656-2]
gi|323517535|gb|ADX91916.1| CMP/dCMP deaminase zinc-binding protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332737235|gb|EGJ68161.1| putative guanine deaminase [Acinetobacter baumannii 6014059]
Length = 160
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|307328842|ref|ZP_07608012.1| CMP/dCMP deaminase zinc-binding [Streptomyces violaceusniger Tu
4113]
gi|306885507|gb|EFN16523.1| CMP/dCMP deaminase zinc-binding [Streptomyces violaceusniger Tu
4113]
Length = 166
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + T P V +++ DG V+GRG HAEV AL A
Sbjct: 25 MRLALEEAVRA-PETGDVP-VGAVVLGPDGSVLGRGRNEREAHGDPTAHAEVLALRAAAH 82
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 83 HLGGWRLTGCTLVVTLEPCTMC 104
>gi|54297635|ref|YP_124004.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
gi|53751420|emb|CAH12838.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris]
Length = 149
Score = 72.7 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQ 58
D +M A + + G V ++V KD ++G G ++ HAE++
Sbjct: 4 IDKFWMQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIR 59
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
A+ +A + T YVTLEPC
Sbjct: 60 AIRQASRKLNNHRLLDTTLYVTLEPCVMC 88
>gi|325981113|ref|YP_004293515.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
gi|325530632|gb|ADZ25353.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212]
Length = 152
Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AAL + G V ++V+ G+++GRG HAE+ A+ +AG
Sbjct: 1 MQAALELALQAQECGEV----PVGAVVVQHGVIVGRGYNRPISTADPSAHAEIMAMRDAG 56
Query: 65 -----EEARGATAYVTLEPCSHY 82
YVTLEPC
Sbjct: 57 GHMANYRLLDCVLYVTLEPCVMC 79
>gi|329768262|ref|ZP_08259763.1| hypothetical protein HMPREF0428_01460 [Gemella haemolysans M341]
gi|328837461|gb|EGF87090.1| hypothetical protein HMPREF0428_01460 [Gemella haemolysans M341]
Length = 155
Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ +M AL +R G + ++V DG VI + HAE+
Sbjct: 2 KDHSYYMEMALEEARRAYAKGEV----PIGAVLVVDGEVIAKAHNTREEHQQALNHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A++EA E + Y T+EPC
Sbjct: 58 AIKEACEKQGFWRLDNSYLYTTVEPCVMCS 87
>gi|288931740|ref|YP_003435800.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
10642]
gi|288893988|gb|ADC65525.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM
10642]
Length = 149
Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S D FM A ++ L +V +IVKD ++ G
Sbjct: 4 SLDEYFMEIAKVVAKRSTCLRQ---NVGAVIVKDKRILSTGYNGAPMGLPHCLDIGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GAT Y T +PC +
Sbjct: 61 ELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIKGATLYTTHQPCIMCAKM 111
>gi|218129188|ref|ZP_03457992.1| hypothetical protein BACEGG_00763 [Bacteroides eggerthii DSM 20697]
gi|217988566|gb|EEC54886.1| hypothetical protein BACEGG_00763 [Bacteroides eggerthii DSM 20697]
Length = 138
Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA- 63
M AL ++ G V ++V VI R T HAE+QA+ A
Sbjct: 1 MKQALLEAQKAGDRGEV----PVGAVVVCKDRVIARAHNLTETLTDVTAHAEMQAITAAA 56
Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
G+ T YVT+EPC CA I R+V +D L
Sbjct: 57 STLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGRLVFGAEDEKRGYQRYAPHAL 110
Query: 120 SQKGIIV 126
K ++V
Sbjct: 111 HPKTVVV 117
>gi|86132518|ref|ZP_01051112.1| cytidine/deoxycytidylate deaminase family protein [Dokdonia
donghaensis MED134]
gi|85817079|gb|EAQ38263.1| cytidine/deoxycytidylate deaminase family protein [Dokdonia
donghaensis MED134]
Length = 149
Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
D FM AL+ ++ G V ++V D ++I R HAE+QA
Sbjct: 6 DDTYFMKKALQEAQAAFDQGEI----PVGAVVVIDNMIIARAHNLTERLTDVTAHAEMQA 61
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A G+ + T YVTLEPC
Sbjct: 62 ITSASNYIGGKYLQQCTLYVTLEPCQMC 89
>gi|194334351|ref|YP_002016211.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
gi|194312169|gb|ACF46564.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
271]
Length = 155
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
RF+ AL + +V LIV++G V+ GV HAEV A+ A
Sbjct: 5 RFLDRALALAVENVAAGGG--PFGALIVRNGEVVATGVNRVTRENDPTSHAEVNAIRAAS 62
Query: 65 EEAR-----GATAYVTLEPCSHY 82
++ + G Y + EPC
Sbjct: 63 QKLKTFKLEGCELYSSCEPCPMC 85
>gi|325528281|gb|EGD05445.1| riboflavin biosynthesis protein RibD [Burkholderia sp. TJI49]
Length = 119
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
DL +L L RG+ L VE G + S + + VD +++Y + ++G
Sbjct: 22 HGKVDLPAMLAALGARGINELHVEAGHKLNGSLLREQCVDELLVYLAPSLLGGDAAGMFD 81
Query: 330 ----EEGYLEKNFMCVRRDYFGSDVCL 352
+ + + G D+ +
Sbjct: 82 LAAPANLDARTRLVFHQIERIGDDLRI 108
>gi|194398441|ref|YP_002036741.1| cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
gi|194358108|gb|ACF56556.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae G54]
Length = 106
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM ALR + + + C+IVKDG +IGRG A HAE+ A+E+A
Sbjct: 9 EVFMREALREAEIALEHDEI--PIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDA 66
Query: 64 -----GEEARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NLSEESWRLLDCTLFVTIEPCVMCS 91
>gi|172036189|ref|YP_001802690.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
51142]
gi|171697643|gb|ACB50624.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
51142]
Length = 184
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
+M AL+ + +G V +I+ +I G + HAE+ A+
Sbjct: 37 HWMRQALQLANKAAELGDV----PVGAVIINHQNNIIAEGYNSKEQNHDPTGHAEIMAIH 92
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A E T YVTLEPC
Sbjct: 93 RASEILQSWHLEECTLYVTLEPCIMC 118
>gi|184157635|ref|YP_001845974.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
gi|183209229|gb|ACC56627.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU]
Length = 158
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|150004479|ref|YP_001299223.1| cytidine/deoxycytidylate deaminase [Bacteroides vulgatus ATCC
8482]
gi|254882789|ref|ZP_05255499.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
gi|294778238|ref|ZP_06743664.1| guanine deaminase [Bacteroides vulgatus PC510]
gi|319643895|ref|ZP_07998478.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
gi|149932903|gb|ABR39601.1| cytidine/deoxycytidylate deaminase [Bacteroides vulgatus ATCC
8482]
gi|254835582|gb|EET15891.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
gi|294447866|gb|EFG16440.1| guanine deaminase [Bacteroides vulgatus PC510]
gi|317384512|gb|EFV65478.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
Length = 155
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M A+ S +V +I KDG +I G HAEV A+ A
Sbjct: 4 EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGANRVTSQCDPTAHAEVSAIRAA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 ASKLGTFNLSGCEIYTSCEPCPMC 85
>gi|268591994|ref|ZP_06126215.1| guanine deaminase [Providencia rettgeri DSM 1131]
gi|291312385|gb|EFE52838.1| guanine deaminase [Providencia rettgeri DSM 1131]
Length = 155
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 7 DARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D +F+ A+ + G ++V DG V+ GV HAE+ A
Sbjct: 3 DTQFLQQAINLAMENVRAGGR-----PFGAIVVCDGQVVASGVNQMLELNDPTAHAELMA 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +AG+ + Y + +PC
Sbjct: 58 LRQAGQKLSRVKLDDCVVYASGQPCPMC 85
>gi|229819017|ref|YP_002880543.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
gi|229564930|gb|ACQ78781.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
Length = 158
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQAL 60
+ AL + T P V +++ DG VIGRG HAE+ A+
Sbjct: 2 DHEEAIGLALELA-RGALETDDVP-VGAVVLGPDGEVIGRGANRREADDDPTAHAEMIAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA G T VTLEPC+
Sbjct: 60 REAAAALGQWRLEGCTLAVTLEPCTMC 86
>gi|161529120|ref|YP_001582946.1| deaminase-reductase domain-containing protein [Nitrosopumilus
maritimus SCM1]
gi|160340421|gb|ABX13508.1| bifunctional deaminase-reductase domain protein [Nitrosopumilus
maritimus SCM1]
Length = 218
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 11/220 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+ R H+ L A+S D I ++ ++H LR+ DAIL+G T D+
Sbjct: 1 MEKSRPHVILSGAISVDGKIATKT-NDSKLSSQKDIQRLHKLRSSVDAILIGKNTASRDN 59
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---R 261
P LT R +P+RI+LD +S SKI++++ P II L
Sbjct: 60 PLLTVRHVK--GKNPIRIVLDSKGTISKTSKILQSSNKVPTIIAISKKITKKNLEKLEKF 117
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
I D +LK LL L + + ++LVEGG V F+ L D +IL S ++G
Sbjct: 118 PVEIISTGNDSVNLKLLLKKLSKKKIKTILVEGGGTVNWEFVKHNLFDEMILTISPYLLG 177
Query: 322 EGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
S L N + + L Y+
Sbjct: 178 GEDSISYLRGTGFSRISHSPNLRLKSVKRLKNHLVLHYVK 217
>gi|262200019|ref|YP_003271228.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
14365]
gi|262083366|gb|ACY19335.1| CMP/dCMP deaminase zinc-binding protein [Haliangium ochraceum DSM
14365]
Length = 147
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG----ATAYVTLEPCSH 81
V +IV DG +I RG HAEV+AL A T YVT EPC
Sbjct: 18 PVGAVIVCDGEIIARGRNRRQLDKDPTAHAEVEALRSASRSLGNWRVEGTLYVTQEPCPM 77
Query: 82 Y 82
Sbjct: 78 C 78
>gi|237736005|ref|ZP_04566486.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
gi|229421886|gb|EEO36933.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817]
Length = 163
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 26/102 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------AYG 50
+D FM AL + N V IV + ++G G
Sbjct: 8 EWDEYFMGVALLSGKRSK---DPNTQVGACIVNEEKKIVGVGYNGLPIGCSDDEYPWERE 64
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + T YV L PC
Sbjct: 65 GEFLETKYPFVCHAELNAILNSTKSLKNCTIYVALFPCHECS 106
>gi|159906167|ref|YP_001549829.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C6]
gi|159887660|gb|ABX02597.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C6]
Length = 145
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
FM A++ ++ + + ++V +IGRG HAE+ ALE AG
Sbjct: 4 FMEEAIKEAKLGLEEGGI--PIGAVLVYKNKIIGRGHNRRVQTNSAILHAEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ Y TL PC
Sbjct: 62 LTSDIYKNCELYTTLSPCIMCS 83
>gi|53802428|ref|YP_112823.1| zinc-binding domain-containing protein [Methylococcus capsulatus
str. Bath]
gi|53756189|gb|AAU90480.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath]
Length = 137
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG--- 69
+R T+ + ++VK+G ++G G HAE+ AL AG
Sbjct: 2 LARTA--ETAGEVPIGAVLVKNGEILGEGHNQPISTHDPTAHAEIVALRAAGARLGNYRL 59
Query: 70 --ATAYVTLEPCSHY 82
T YVTLEPC+
Sbjct: 60 VDTTLYVTLEPCAMC 74
>gi|332637118|ref|ZP_08415981.1| tRNA-adenosine deaminase [Weissella cibaria KACC 11862]
Length = 181
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
FM A++ ++ +G + ++V+ G +IGRG HAE+QA+ E
Sbjct: 11 YFMGEAIKEAKKAGALGEV----PIGAVVVQHGEIIGRGFNLRERLEDASQHAELQAITE 66
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A A +VTLEPC
Sbjct: 67 ANRLVKSWRLPDAQLFVTLEPCIMC 91
>gi|150387879|ref|YP_001317928.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
QYMF]
gi|149947741|gb|ABR46269.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
QYMF]
Length = 151
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
+A +MS AL ++ +G + +I+++ VI HAE+ A
Sbjct: 1 MEAYYMSLALEEAKKAYELGEV----PIGAIILRENKVIAAAHNLRESHHDATAHAEIIA 56
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
++ A G +T +VT+EPC
Sbjct: 57 IQAACRRLGGWRLTNSTLFVTIEPCPMC 84
>gi|115522956|ref|YP_779867.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
BisA53]
gi|115516903|gb|ABJ04887.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisA53]
Length = 148
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
+ C+IV+DG VI HAE+ A+ +A E YVTLEPC+
Sbjct: 24 PIGCVIVRDGEVIATAHNRTLSDRDPTAHAEILAIRQAAASLGSERLVDCDLYVTLEPCT 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|152989527|ref|YP_001346733.1| hypothetical protein PSPA7_1349 [Pseudomonas aeruginosa PA7]
gi|150964685|gb|ABR86710.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 182
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ A G+T YVTLEPC
Sbjct: 49 PVGAVLVREGEIIGRGFNQPISSHDPSAHAEMVAIRMAAAEAGNYRLPGSTLYVTLEPCG 108
Query: 81 HYG 83
Sbjct: 109 MCS 111
>gi|83647619|ref|YP_436054.1| cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
gi|83635662|gb|ABC31629.1| Cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396]
Length = 156
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+DG V+G G HAE+ A+ +A G+T YVTLEPC
Sbjct: 18 PVGAILVRDGQVLGEGWNQPIRSHDPTAHAEISAIRKASAVAGNYRLPGSTLYVTLEPCV 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|295671881|ref|XP_002796487.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
Pb01]
gi|226283467|gb|EEH39033.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
Pb01]
Length = 197
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
FM AL + G T V C++V + +IG G+ + G HAE A+
Sbjct: 17 HEYFMRKALDMGEEALASGET----PVGCVLVHNEEIIGSGMNDTNKSMNGTRHAEFLAV 72
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EE YVT+EPC
Sbjct: 73 EEVLRSYPRSIFHETDLYVTVEPCIMC 99
>gi|327472530|gb|EGF17961.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK408]
Length = 156
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|326799622|ref|YP_004317441.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
gi|326550386|gb|ADZ78771.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21]
Length = 149
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M SFD FM+ AL + + + V ++ KD +I G
Sbjct: 1 MTKPSFDEIFMNLALELAERSHCVKAH---VGAVLAKDTRIISIGYNGPPSGTHNCDQEW 57
Query: 51 ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPC 79
GC HAE A+ A G +GAT Y TL PC
Sbjct: 58 PLEGCARDSKGSCSLALHAEENAILYAVKNGAGLQGATLYTTLSPC 103
>gi|320335249|ref|YP_004171960.1| Guanine deaminase [Deinococcus maricopensis DSM 21211]
gi|319756538|gb|ADV68295.1| Guanine deaminase [Deinococcus maricopensis DSM 21211]
Length = 155
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
M A R + +V + +IVKDG +I RG + HAEV A+ A
Sbjct: 5 HMQEAARLALENV-TSGHGGPFGAVIVKDGEIIARGANNVTASNDPTAHAEVTAIRAAAA 63
Query: 66 E-----ARGATAYVTLEPCSHY 82
+ Y + EPC
Sbjct: 64 KLGRFDLSDCEIYTSCEPCPMC 85
>gi|325697330|gb|EGD39216.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK160]
Length = 165
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 19 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 76
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 77 NRHENSWRLLDTTLFVTIEPCVMCS 101
>gi|209886320|ref|YP_002290177.1| cytidine/deoxycytidylate deaminase family protein [Oligotropha
carboxidovorans OM5]
gi|209874516|gb|ACI94312.1| cytidine/deoxycytidylate deaminase family protein [Oligotropha
carboxidovorans OM5]
Length = 154
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+S RF+ A+ +R +V ++VKDG VI GV HAE+Q
Sbjct: 1 MSDT-ERFLCEAIELARNNVRNGGR--PFGAVLVKDGKVIATGVNEIGATGDPTTHAELQ 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A G Y + PC
Sbjct: 58 AIRAASRVLGTPRLDGCIVYASGHPCPMC 86
>gi|71736711|ref|YP_273597.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|289625949|ref|ZP_06458903.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289647891|ref|ZP_06479234.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. aesculi str. 2250]
gi|71557264|gb|AAZ36475.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|320323193|gb|EFW79282.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329536|gb|EFW85525.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330867510|gb|EGH02219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330874802|gb|EGH08951.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 169
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|288929641|ref|ZP_06423485.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 317 str. F0108]
gi|288329146|gb|EFC67733.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 317 str. F0108]
Length = 144
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D + M AL +R + G + +I G V+ R T HAE+QA+
Sbjct: 4 DEQMMRKALDEARQALAQGEV----PIGAVIACKGRVVARAHNLTETLCDVTAHAEMQAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSP 86
A G+ T YVT+EPC +
Sbjct: 60 TAAANMLGGKYLPECTLYVTVEPCPMCAGAC 90
>gi|297526352|ref|YP_003668376.1| bifunctional deaminase-reductase domain protein [Staphylothermus
hellenicus DSM 12710]
gi|297255268|gb|ADI31477.1| bifunctional deaminase-reductase domain protein [Staphylothermus
hellenicus DSM 12710]
Length = 225
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 11/199 (5%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
++ ++H R+ DA++VG TV+ DDP LT RL + P R+++D
Sbjct: 22 GKRYRLSSDRDIYRLHYFRSIVDAVMVGANTVIIDDPLLTVRLPDYKGKQPYRVVVDGKL 81
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFR---------KKNINIIYCDCRDLKKLL 279
++ + ++ T ++I + N+ + K +
Sbjct: 82 RVMPELRVFDTRHAPTILITSINNKDREMIRRFLSRGVRILFVDTDKYDPSKIDLRKAVE 141
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ + +LVEGG + S +RL+D + L S ++IG + +
Sbjct: 142 KLYREFSIRKILVEGGGQLIASLFKNRLIDELYLSISPLIIGLNKTSLIEDFLDSPVRLV 201
Query: 340 CVR--RDYFGSDVCLEYIG 356
D+ ++ + Y
Sbjct: 202 LKNIFVDHITGEIIVNYKP 220
>gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces
clavuligerus ATCC 27064]
gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 227
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P+++ + LS D VI V + + V ++ + D RD
Sbjct: 81 YPLKVTVTRTGDLSADLNFWHHGGKKLVITVDDAVEKVRTTLGDLADVVSVGPDLRDWGL 140
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGY 333
+L L R V L+VEGG + + + L D + L + +++G+ G L G
Sbjct: 141 VLDELGRRNVGQLMVEGGGTIHTQLMAADLADEVHLAIAPLLVGQPGAARFLGAADYPGG 200
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
+ V + Y K
Sbjct: 201 STARMKVLEVRAIDDMVFVRYAPKE 225
>gi|332365217|gb|EGJ42980.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1059]
Length = 179
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 33 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 90
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 91 NRHENSWRLLDTTLFVTIEPCVMCS 115
>gi|332654745|ref|ZP_08420487.1| cytidine/deoxycytidylate deaminase family protein
[Ruminococcaceae bacterium D16]
gi|332516088|gb|EGJ45696.1| cytidine/deoxycytidylate deaminase family protein
[Ruminococcaceae bacterium D16]
Length = 152
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V C+IVKDG ++G G HAE++A+ +A G T YVTLEPC
Sbjct: 24 PVGCVIVKDGKIVGEGRNRREEHGDATAHAELEAIRDACARLGSWRLHGCTLYVTLEPCP 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|325104971|ref|YP_004274625.1| Guanine deaminase [Pedobacter saltans DSM 12145]
gi|324973819|gb|ADY52803.1| Guanine deaminase [Pedobacter saltans DSM 12145]
Length = 158
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAY---GGCPHAEVQALEEA 63
FM+ A+ + +V T +IVK+G +I G T HAE+ A+ A
Sbjct: 7 REFMNLAIEKASENV-KTGKGGPFGSVIVKNGKIISATGNTVNKTCDPTAHAEIAAIRLA 65
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+E + G Y + EPC
Sbjct: 66 CQELKSVTLEGCEIYASCEPCPMC 89
>gi|27904732|ref|NP_777858.1| putative deaminase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|38372581|sp|Q89AM8|Y236_BUCBP RecName: Full=Uncharacterized protein bbp_236
gi|27904129|gb|AAO26963.1| putative deaminase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 162
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ D FM A+ ++ G V ++V + +IG+G+ + + HAE
Sbjct: 1 MHDSDKYFMKCAIFLAKISEMIGEV----PVGAVLVFNNTIIGKGLNSSILNHDPTAHAE 56
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
++AL + + T YVTLEPC
Sbjct: 57 IKALRNGAKFLKNYRLLHTTLYVTLEPCIMC 87
>gi|254168071|ref|ZP_04874919.1| hypothetical protein ABOONEI_218 [Aciduliprofundum boonei T469]
gi|254168095|ref|ZP_04874942.1| hypothetical protein ABOONEI_712 [Aciduliprofundum boonei T469]
gi|289596025|ref|YP_003482721.1| CMP/dCMP deaminase zinc-binding protein [Aciduliprofundum boonei
T469]
gi|197622861|gb|EDY35429.1| hypothetical protein ABOONEI_712 [Aciduliprofundum boonei T469]
gi|197623114|gb|EDY35681.1| hypothetical protein ABOONEI_218 [Aciduliprofundum boonei T469]
gi|289533812|gb|ADD08159.1| CMP/dCMP deaminase zinc-binding protein [Aciduliprofundum boonei
T469]
Length = 161
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A S V +IVKD ++ G
Sbjct: 4 SWDEYFMRMAYLASTRSTCTRRK---VGAVIVKDKRILATGYNGPPKGLAHCDVTGCIRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + AT YVT PC +
Sbjct: 61 ELNVPSGERHELCRGLHAEQNAIIQAAVHGVSIKDATIYVTNHPCVVCAKM 111
>gi|193212272|ref|YP_001998225.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
gi|193085749|gb|ACF11025.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
Length = 148
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D FM+ AL +R V ++V++G +I G H E+ +
Sbjct: 2 DRDREFMALALEQARKSYEEGGV--PVGAVMVENGKLIAAGHNQRVQNADPIAHGEMDCI 59
Query: 61 EEAGEEAR--GATAYVTLEPCSHY 82
+AG AR T Y TL PC
Sbjct: 60 RKAGRRARYDTVTLYTTLSPCMMC 83
>gi|327312523|ref|YP_004327960.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella denticola F0289]
gi|326945985|gb|AEA21870.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella denticola F0289]
Length = 144
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
D +M AL + P V ++V +I R T HAE+QA+
Sbjct: 4 DLYYMQRALDEAG-AAYREGEIP-VGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAITM 61
Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A G+ + T YVT+EPC CA I RR+V D +
Sbjct: 62 AAGELGGKYLQDCTLYVTVEPCV------MCAGAIGWAQFRRIVYGCPDEKRGYHLYAPK 115
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLT 143
L + + +M E K + +
Sbjct: 116 ALHPRADVTYGVMGEECKALMQRFFQ 141
>gi|327463521|gb|EGF09840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis
SK1057]
gi|327467872|gb|EGF13362.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK330]
Length = 156
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|126653720|ref|ZP_01725638.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
deaminase [Bacillus sp. B14905]
gi|126589684|gb|EAZ83820.1| cytidine/deoxycytidylate deaminase family protein; probable guanine
deaminase [Bacillus sp. B14905]
Length = 132
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
FM AL + + P L+VK+G +I GV HAE+QA+ +A
Sbjct: 4 HEFMRKALDLANENALSEHGAP-FGALVVKNGQIISSGVNEVAKTNDLTNHAEIQAIRQA 62
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
G Y + EPC + A+ C D +
Sbjct: 63 CHTLQTINLEGCEMYASTEPCPMCLSAIYYAKLTTVYYFHASNTCQDYVYHQ 114
>gi|168184980|ref|ZP_02619644.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum Bf]
gi|237793341|ref|YP_002860893.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum Ba4 str. 657]
gi|182671972|gb|EDT83933.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum Bf]
gi|229261589|gb|ACQ52622.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum Ba4 str. 657]
Length = 148
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++ A+ ++ + G V +IVK+ +I + HAE+ A++EA
Sbjct: 4 YIEYAIIEAKKALAIGEV----PVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+G YVTLEPC+
Sbjct: 60 CNTIHNWRLKGCKMYVTLEPCAMC 83
>gi|304393183|ref|ZP_07375111.1| tRNA-specific adenosine deaminase [Ahrensia sp. R2A130]
gi|303294190|gb|EFL88562.1| tRNA-specific adenosine deaminase [Ahrensia sp. R2A130]
Length = 153
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDAR-FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
M ++D FM AL +R G V ++V+DG V+ + +
Sbjct: 1 MTKDNYDVASFMEQALVEARAAAERGEV----PVGAVLVRDGEVVAKAGNRTLELHDPSA 56
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ + +A + YVTLEPC+
Sbjct: 57 HAELLVIRQACAAAKSQRLPDCDLYVTLEPCTLC 90
>gi|73668036|ref|YP_304051.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
barkeri str. Fusaro]
gi|72395198|gb|AAZ69471.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Methanosarcina barkeri str. Fusaro]
Length = 232
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 13/224 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + + A+S D + V I+G + +V LRAQ+DA++VGIGTVL+DDP
Sbjct: 1 MDKPFVFINSAMSADGKLSTKERKQVRISGKLDFERVDELRAQADAVMVGIGTVLSDDPS 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
LT + + +P+RII+D + LD+ I K +I V+ +
Sbjct: 61 LTVKSPKRKAARKAAGKNENPVRIIVDSSARTPLDADIFKKGDGLRIIAVSTSAPAEKIE 120
Query: 259 AFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
KK + + DL++L+ +L G+ L+VEGGA + +++ LVD I +
Sbjct: 121 KLEKKALVIKAGTEKVDLQELVRVLKKMGINILMVEGGATLNWGMLSAGLVDEIYTFVGN 180
Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIGK 357
+IG P+ + + + L++ K
Sbjct: 181 FIIGGATAPTFTDGKGFSEAELLELELSSAETIEEGILLKWKVK 224
>gi|332358122|gb|EGJ35954.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK49]
Length = 156
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|169796435|ref|YP_001714228.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
AYE]
gi|213156454|ref|YP_002318874.1| guanine deaminase [Acinetobacter baumannii AB0057]
gi|215483897|ref|YP_002326122.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB307-0294]
gi|301347084|ref|ZP_07227825.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB056]
gi|301512279|ref|ZP_07237516.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB058]
gi|301596132|ref|ZP_07241140.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB059]
gi|332854738|ref|ZP_08435516.1| putative guanine deaminase [Acinetobacter baumannii 6013150]
gi|332865718|ref|ZP_08436528.1| putative guanine deaminase [Acinetobacter baumannii 6013113]
gi|169149362|emb|CAM87246.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter baumannii
AYE]
gi|213055614|gb|ACJ40516.1| guanine deaminase [Acinetobacter baumannii AB0057]
gi|213986575|gb|ACJ56874.1| Guanine deaminase(Guanase) [Acinetobacter baumannii AB307-0294]
gi|332727824|gb|EGJ59227.1| putative guanine deaminase [Acinetobacter baumannii 6013150]
gi|332735145|gb|EGJ66227.1| putative guanine deaminase [Acinetobacter baumannii 6013113]
Length = 160
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRTA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|28198227|ref|NP_778541.1| cytosine deaminase [Xylella fastidiosa Temecula1]
gi|170729545|ref|YP_001774978.1| cytosine deaminase [Xylella fastidiosa M12]
gi|182680863|ref|YP_001829023.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
gi|28056297|gb|AAO28190.1| cytosine deaminase [Xylella fastidiosa Temecula1]
gi|167964338|gb|ACA11348.1| cytosine deaminase [Xylella fastidiosa M12]
gi|182630973|gb|ACB91749.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23]
Length = 165
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAE 56
PV +M AL + P V +++ +G ++G G T++ HAE
Sbjct: 6 PVLPEHTHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAE 64
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ AL AG + R G T YVTLEPC
Sbjct: 65 IMALRAAGHQLRNHRMPGCTLYVTLEPCLMC 95
>gi|315222391|ref|ZP_07864296.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus anginosus F0211]
gi|315188552|gb|EFU22262.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Streptococcus anginosus F0211]
Length = 155
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + + C+IVKDG +IG G A HAEV A+EEA
Sbjct: 9 EEFMLEALKEAEIAL--ANDEIPIGCVIVKDGKIIGHGHNAREELQRAVMHAEVMAIEEA 66
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 67 NAYEKSWRLLDTTLFVTIEPCVMCS 91
>gi|288921249|ref|ZP_06415533.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
gi|288347339|gb|EFC81632.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
Length = 150
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-HAEVQ 58
MP D R+M+ A+ + T SV +IV + I G + HAE
Sbjct: 1 MPQLD-DHRWMTRAIELAHRCPPATGA-YSVGAVIVDENNEEIAFGYSREVDDAVHAEES 58
Query: 59 ALEEAG---EEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SG 113
AL + AT Y TLEPC R C Q I+ GI RVV+ +P + V
Sbjct: 59 ALAKIAPDDPRLATATIYSTLEPCSQRRSRPRTCTQLILAAGIPRVVIAWREPSLFVADC 118
Query: 114 RGLQWLSQKGIIV 126
+G + L+ G+ V
Sbjct: 119 QGCELLTAAGVTV 131
>gi|255084043|ref|XP_002508596.1| ytidine and deoxycytidylated deaminase zinc-binding protein
[Micromonas sp. RCC299]
gi|226523873|gb|ACO69854.1| ytidine and deoxycytidylated deaminase zinc-binding protein
[Micromonas sp. RCC299]
Length = 443
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAY-------------- 49
+D FMS A ++ N V +IV VI G G +
Sbjct: 154 KWDDYFMSVAFLSAQRSK---DPNKQVGAVIVGPDRVIMGVGYNGFPRGCSDSDLPWAKK 210
Query: 50 --GGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ + + GAT YVT+ PC+
Sbjct: 211 STNGNPMETKYAYVCHAEMNAIMNKNSQSLHGATVYVTMYPCNEC 255
>gi|196229635|ref|ZP_03128499.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
gi|196225961|gb|EDY20467.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
Length = 234
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 14/229 (6%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+ R +T A++ D I T K ++ +RA+ DAIL G T+
Sbjct: 1 MPRQPPRPFVTSNFAMTWDGRISTRRSTPANFTSPKDKRRLVEIRAECDAILAGAKTIAT 60
Query: 203 DDPELTCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII--VTEND 252
D+ + Q P+R++L ++ ++ ++ +I
Sbjct: 61 DNMTMGLPDPALRTARVKRGQSAYPLRVLLTNSGRIDPALRVFESTFSPIIIFSTTRMPA 120
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
ALA + L T+ GV L+ EGGA + + +++ L+D I
Sbjct: 121 RVQSALAGKADLWLHEGPAVNLAGMLATLRADYGVKRLVCEGGAQIFRALLSAGLIDEIH 180
Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIGK 357
L + + G + N + + L Y +
Sbjct: 181 LTLAPKIFGGIKATTITGIAGDFLPKSINAHLRSMEVIEDECFLRYRIR 229
>gi|78222831|ref|YP_384578.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
GS-15]
gi|78194086|gb|ABB31853.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
GS-15]
Length = 154
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++D FM ++ T V +IVKD ++ G
Sbjct: 1 MTRPTWDEYFMEITHLVAKRS---TCLRRQVGAVIVKDKNILATGYNGAPSGVAHCLEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G T Y T PC +
Sbjct: 58 CLRAKLGIPSGERHELCRGLHAEQNAIIQAAKHGINIDGGTLYCTTMPCIICSKM 112
>gi|116193885|ref|XP_001222755.1| hypothetical protein CHGG_06660 [Chaetomium globosum CBS 148.51]
gi|88182573|gb|EAQ90041.1| hypothetical protein CHGG_06660 [Chaetomium globosum CBS 148.51]
Length = 551
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ +RFM AL +R + T+ P V C++V G VI RG+ A G HAE+ A+
Sbjct: 214 AMHSRFMREALDMARLAL-KTNETP-VGCVLVYKGRVIARGMNATNVTRNGTRHAELMAI 271
Query: 61 EEAGEEARGATAYVTLEPCSHYG 83
+ G
Sbjct: 272 SALLSYLPKSDLESKANASHEKG 294
>gi|107103282|ref|ZP_01367200.1| hypothetical protein PaerPA_01004351 [Pseudomonas aeruginosa PACS2]
Length = 182
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ A G+T YVTLEPCS
Sbjct: 49 PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108
Query: 81 HYG 83
Sbjct: 109 MCS 111
>gi|78778025|ref|YP_394340.1| guanine deaminase [Sulfurimonas denitrificans DSM 1251]
gi|78498565|gb|ABB45105.1| Guanine deaminase [Sulfurimonas denitrificans DSM 1251]
Length = 149
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 18/89 (20%)
Query: 7 DARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ FM A++ + G +IVKDG VI + HAE++
Sbjct: 3 HSIFMKKAIKEATFGVERGDGG-----PFGAVIVKDGKVIAKAHNRVLKLNDATAHAEIE 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ +A ++ Y T PC
Sbjct: 58 AIRKASKKLLTYDLSECEIYTTCMPCPMC 86
>gi|125718966|ref|YP_001036099.1| hypothetical protein SSA_2184 [Streptococcus sanguinis SK36]
gi|125498883|gb|ABN45549.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 156
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|49081784|gb|AAT50292.1| PA3767 [synthetic construct]
Length = 183
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ A G+T YVTLEPCS
Sbjct: 49 PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108
Query: 81 HYG 83
Sbjct: 109 MCS 111
>gi|116493223|ref|YP_804958.1| tRNA-adenosine deaminase [Pediococcus pentosaceus ATCC 25745]
gi|116103373|gb|ABJ68516.1| tRNA-adenosine deaminase [Pediococcus pentosaceus ATCC 25745]
Length = 161
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
+M+ A++ +++ + + ++V DG +IGRG + HAEV A+ EA
Sbjct: 11 FYMNEAIKEAQFAKMIDEV--PIGAVVVHDGKIIGRGHNLREHSQDSTTHAEVLAITEAC 68
Query: 65 EEAR-----GATAYVTLEPCSHYG 83
+ +VT+EPC
Sbjct: 69 AYLKSWRLWDCQLFVTIEPCLMCS 92
>gi|86740847|ref|YP_481247.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
gi|86567709|gb|ABD11518.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
Length = 150
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQ 58
MP D R+M+ A+ + SV +IV K+ I G + HAE
Sbjct: 1 MPQLD-DHRWMTRAIELAHRCPPAAGA-YSVGAVIVDKNNQEIAFGFSREVDDAVHAEES 58
Query: 59 ALEEAG---EEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SG 113
AL + G AT Y TLEPC R C Q I+E I RVV+ +P + V
Sbjct: 59 ALAKIGPGDPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSLFVADC 118
Query: 114 RGLQWLSQKGIIV 126
+G + L+Q G+ V
Sbjct: 119 QGYELLTQAGVTV 131
>gi|68172021|ref|ZP_00545314.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
chaffeensis str. Sapulpa]
gi|88658306|ref|YP_507267.1| cytidine and deoxycytidylate deaminase family protein [Ehrlichia
chaffeensis str. Arkansas]
gi|67998558|gb|EAM85318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
chaffeensis str. Sapulpa]
gi|88599763|gb|ABD45232.1| cytidine and deoxycytidylate deaminase family protein [Ehrlichia
chaffeensis str. Arkansas]
Length = 140
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE- 65
M A+ ++ + V +IV + VI HAE+ A+ A +
Sbjct: 1 MKLAISKAQEDLLEV----PVGAVIVHNNEVISSANNSNIHDIDPTAHAEILAIRNACKI 56
Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
YVTLEPC CAQ I IRR+ + G +
Sbjct: 57 LSTHILNQCDIYVTLEPC------AMCAQAISFSKIRRLYFGAYNKKYGAIENGARIFQF 110
Query: 122 KGII 125
+
Sbjct: 111 CHHV 114
>gi|329770051|ref|ZP_08261446.1| hypothetical protein HMPREF0433_01210 [Gemella sanguinis M325]
gi|328837362|gb|EGF86992.1| hypothetical protein HMPREF0433_01210 [Gemella sanguinis M325]
Length = 155
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
+ +M AL +R G + ++V DG V+ G HAE+
Sbjct: 2 KEHSYYMELALEEARSAYEKGEV----PIGAVLVVDGQVVACGHNTREETQQALNHAEMI 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+++A E + Y T+EPC
Sbjct: 58 AIKKACEKQGFWRLDNSYLYTTIEPCVMCS 87
>gi|15598962|ref|NP_252456.1| hypothetical protein PA3767 [Pseudomonas aeruginosa PAO1]
gi|116051766|ref|YP_789395.1| hypothetical protein PA14_15680 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889954|ref|YP_002438818.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
LESB58]
gi|254236673|ref|ZP_04929996.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254242457|ref|ZP_04935779.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296387724|ref|ZP_06877199.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa PAb1]
gi|313109181|ref|ZP_07795150.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
39016]
gi|9949937|gb|AAG07154.1|AE004795_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115586987|gb|ABJ13002.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168604|gb|EAZ54115.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126195835|gb|EAZ59898.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218770177|emb|CAW25939.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
LESB58]
gi|310881652|gb|EFQ40246.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa
39016]
Length = 182
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ A G+T YVTLEPCS
Sbjct: 49 PVGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCS 108
Query: 81 HYG 83
Sbjct: 109 MCS 111
>gi|126734556|ref|ZP_01750302.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
CCS2]
gi|126715111|gb|EBA11976.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
CCS2]
Length = 277
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 10/206 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ +I S D I + ++G +H LRA +DA+++G+ T L DDP+LT
Sbjct: 50 CQVFAQIGQSLDGRIATETGDAQDVSGEDGLAHLHRLRALADAVVIGVKTALHDDPQLTV 109
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
RL P R+++DP +L D++++ ++I + + +
Sbjct: 110 RLADGTS--PARVVIDPDGRLPNDARLLTDTSARRIVIQAVAKERPAGVEAITLSRASWI 167
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326
L L RG S+L+EGG F+ + L++ + L + ++IG G
Sbjct: 168 APEDILGAL----QERGFKSILIEGGGITITQFLEADLLNRLHLAIAPLLIGSGPQSLTT 223
Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+P+ + GSDV
Sbjct: 224 APIGTLAEARRPK-TDVYNLGSDVLF 248
>gi|21672527|ref|NP_660594.1| hypothetical protein BUsg246 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091621|sp|Q8K9R4|Y246_BUCAP RecName: Full=Uncharacterized protein BUsg_246
gi|21623150|gb|AAM67805.1| hypothetical 20.0 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 151
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M S+ D+ +M AL+++ + G + ++V +IG G H
Sbjct: 1 MK-SNRDSYWMKIALKYAYYAEENGEV----PIGAILVFQEKIIGTGWNSVISQNDSTAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ AL EAG + T YVTL+PC
Sbjct: 56 AEIIALREAGRNIKNYRLVNTTLYVTLQPCMMC 88
>gi|327459989|gb|EGF06328.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1]
Length = 156
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EAFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|311898176|dbj|BAJ30584.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Kitasatospora setae KM-6054]
Length = 231
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EG 332
+L L RGV L+VEGG +V F+ L D + L + +++G+ P L G
Sbjct: 140 AVLDDLGARGVRRLMVEGGGSVHTRFLAEGLADELQLAVAPLLVGQADAPRFLSPAAYPG 199
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ + G V L Y K
Sbjct: 200 GPARRMRLLGARTVGDVVLLRYAPKE 225
>gi|54025280|ref|YP_119522.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
gi|54016788|dbj|BAD58158.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152]
Length = 149
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL 60
+ D +M+ A+ +R P SV +IV DGI I G + HAE AL
Sbjct: 2 TTDHHWMNRAIELARR----CPPAPGAFSVGAVIVADGIEIASGYSRETDLKVHAEEAAL 57
Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGR- 114
++ AT Y TLEPCS + PC ++ GI RVV+ +P V+
Sbjct: 58 DKLDPHDPRLSRATIYSTLEPCSERATTTRLPCTDRVLAVGIPRVVIAWREPATFVADCV 117
Query: 115 GLQWLSQKGIIV 126
G++ L Q G+ V
Sbjct: 118 GVEKLEQSGVEV 129
>gi|297172082|gb|ADI23064.1| cytosine/adenosine deaminases [uncultured gamma proteobacterium
HF0770_07M15]
Length = 150
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
M AA+R + V ++V++G VI R HAE+ AL A
Sbjct: 1 MQAAIRQAVKAYEE--DEVPVGAVVVREGAVIARAWNQVELLKDATAHAEMIALTAAEAA 58
Query: 66 ----EARGATAYVTLEPCSHY 82
G T YVT EPC
Sbjct: 59 VGDWRLTGCTLYVTKEPCPMC 79
>gi|212693618|ref|ZP_03301746.1| hypothetical protein BACDOR_03136 [Bacteroides dorei DSM 17855]
gi|237724217|ref|ZP_04554698.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D4]
gi|212663871|gb|EEB24445.1| hypothetical protein BACDOR_03136 [Bacteroides dorei DSM 17855]
gi|229437405|gb|EEO47482.1| cytidine/deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4]
Length = 187
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M A+ S +V +I KDG +I GV HAEV A+ A
Sbjct: 36 EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGVNRVTSQCDPTAHAEVSAIRAA 93
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 94 ATKLGTFNLSGCEIYTSCEPCPMC 117
>gi|325856324|ref|ZP_08172040.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella denticola CRIS 18C-A]
gi|325483508|gb|EGC86480.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella denticola CRIS 18C-A]
Length = 144
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 52/148 (35%), Gaps = 17/148 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +M AL + P V ++V +I R T HAE+QA+
Sbjct: 2 KKDLYYMQRALDEAG-AAYREGEIP-VGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
A G+ + T YVT+EPC CA I RR+V D
Sbjct: 60 TMAAGELGGKYLQDCTLYVTVEPCV------MCAGAIGWAQFRRIVYGCPDEKRGYHLYA 113
Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ L + + +M E K + +
Sbjct: 114 PKALHPRADVTYGVMGEECKALMRRFFQ 141
>gi|268680105|ref|YP_003304536.1| cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
gi|268618136|gb|ACZ12501.1| Cytosine deaminase [Sulfurospirillum deleyianum DSM 6946]
Length = 146
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+F+ AA+ ++ + + ++V DG ++GRG G HAE+ LE AG
Sbjct: 4 KFLEAAIEEAQKGLDEGGI--PIGSVLVIDGKIVGRGHNQRVQKGSAILHAEMDCLENAG 61
Query: 65 E----EARGATAYVTLEPCSHYG 83
+ R AT Y TL PC
Sbjct: 62 RLSAADYRNATLYSTLSPCDMCS 84
>gi|9630421|ref|NP_046853.1| gp36.1 [Mycobacterium phage D29]
gi|6014935|sp|O22000|DCTD_BPMD2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|3172285|gb|AAC18478.1| putative deoxycytidinylate deaminase [Mycobacterium phage D29]
Length = 128
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 34/119 (28%), Gaps = 34/119 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M +D F+ A ++ S V ++VKD V G G
Sbjct: 1 MSRPDWDEYFLGIATAAAQRSDCERSK---VGAVVVKDRRVRGTGYNGAPAGAAGCSTCP 57
Query: 54 -----------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPC 88
HAE AL E+ GAT YVT EPC
Sbjct: 58 RRLSGAVPGVSDYSSGATRCVAVHAEANALLYCDREDLIGATLYVTREPCYACSNLIAA 116
>gi|326315881|ref|YP_004233553.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372717|gb|ADX44986.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 169
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG-----CPHA 55
P+ D R++ A+ + N +IV DG V+ A G HA
Sbjct: 11 PLDERDGRYLRQAIALADKAR--ARGNRPFGAVIVGDDGTVLAEAWNA-NGETGDCTAHA 67
Query: 56 EVQAL-----EEAGEEARGATAYVTLEPCSHY 82
E A+ A E AT Y + EPC
Sbjct: 68 ETSAIRVASPRHAREVLARATLYSSGEPCVMC 99
>gi|254719939|ref|ZP_05181750.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. 83/13]
gi|265984947|ref|ZP_06097682.1| CMP/dCMP deaminase zinc-binding protein [Brucella sp. 83/13]
gi|306838528|ref|ZP_07471366.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. NF 2653]
gi|264663539|gb|EEZ33800.1| CMP/dCMP deaminase zinc-binding protein [Brucella sp. 83/13]
gi|306406395|gb|EFM62636.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. NF 2653]
Length = 157
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEV 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLVDCDLYVTLEPCAMC 94
>gi|251781204|ref|ZP_04824120.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243081651|gb|EES47712.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 152
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
F+ A ++ G + +IVKD IVI + T HAE+ A+ EA
Sbjct: 3 FLDIAKEEAKKAMSKGEV----PIGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREA 58
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G YVTLEPC+
Sbjct: 59 SKFLEDWRLNGTEMYVTLEPCTMC 82
>gi|153010358|ref|YP_001371572.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC 49188]
gi|151562246|gb|ABS15743.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC 49188]
Length = 173
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV G +I R HAEV A+ EAG
Sbjct: 32 MEIALAEA-RAAGSRGEVP-IGAVIVHQGTIIARAGNRTREFNDVTAHAEVLAIREAGKA 89
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 90 LQSERLVDCDLYVTLEPCAMC 110
>gi|39996786|ref|NP_952737.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
sulfurreducens PCA]
gi|39983674|gb|AAR35064.1| cytidine/deoxycytidylate deaminase family protein [Geobacter
sulfurreducens PCA]
gi|298505797|gb|ADI84520.1| deoxycytidylate deaminase [Geobacter sulfurreducens KN400]
Length = 154
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++D FM ++ T V +IVKD ++ G
Sbjct: 1 MTRPTWDEYFMEITHLVAKRS---TCLRRQVGAVIVKDKNILATGYNGAPSGVAHCLDVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G T Y T PC +
Sbjct: 58 CLRERLGIPSGERHELCRGLHAEQNAIIQAAKHGTNIDGGTLYCTTMPCIICSKM 112
>gi|325978643|ref|YP_004288359.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325178571|emb|CBZ48615.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 154
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+M A++ + + G +IVKDG +I G + H EV A
Sbjct: 3 EDYMQKAIQEAYDGIKKGDGG-----PFGSVIVKDGEIIASGHNMVLAHHDPTAHGEVTA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHYGRSP---PCAQFIIECGIRRVVVCVDDPDVRV 111
+ +AGE+ G T + T EPC + + C I +
Sbjct: 58 IRKAGEKLGTHDLSGTTLFTTGEPCPMCLAACLWANIDKIYYGCTIADNAMIGFRDQRFD 117
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
G + K +V + K+F
Sbjct: 118 ELMGGRKNLPKDYLVQLNHDDCLKLFKDYQEMTHN 152
>gi|306845521|ref|ZP_07478090.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. BO1]
gi|306273842|gb|EFM55669.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. BO1]
Length = 157
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEV 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|313894732|ref|ZP_07828293.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas sp. oral taxon 137 str. F0430]
gi|320531057|ref|ZP_08032086.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas artemidis F0399]
gi|312976641|gb|EFR42095.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas sp. oral taxon 137 str. F0430]
gi|320136639|gb|EFW28592.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas artemidis F0399]
Length = 159
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 27/105 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA-YGGCP----- 53
M ++ +D FM A+ + + V IV + ++G G GC
Sbjct: 1 MIIT-WDEYFMGIAIFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDSEYP 56
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G YV+L PC+
Sbjct: 57 WGRTGEFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNEC 101
>gi|282852744|ref|ZP_06262086.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus gasseri 224-1]
gi|282556486|gb|EFB62106.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus gasseri 224-1]
Length = 150
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A ++ G + ++V KDG VIG G HAE+ A+ +A
Sbjct: 1 MQLAFAQAKKAEDQGEV----PIGAIVVDKDGNVIGEGYNRRELDEDATQHAEMIAIRQA 56
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ + ++TLEPC
Sbjct: 57 CQNLGSWRLVDCSLFITLEPCPMCS 81
>gi|257051630|ref|YP_003129463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halorhabdus
utahensis DSM 12940]
gi|256690393|gb|ACV10730.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Halorhabdus utahensis DSM 12940]
Length = 220
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+ + A+S D + V I+G ++V LRA SDA++VG+GTVLADDP LT
Sbjct: 2 HVVVNAAMSADGKLSTHDREQVAISGEADFDRVDGLRADSDAVMVGVGTVLADDPSLTVD 61
Query: 211 LNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAP-VIIVTENDDPVLALAFR 261
P R++ D + D++I+ V+ + V L
Sbjct: 62 DPDRIAQRGDRGDPPQPARVVADSRARTPPDAQILDDEAETYLVVGERAATEKVERLEST 121
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ D DL L L G+ L+VEGG + S LVD + ++ ++IG
Sbjct: 122 GATVIAAGHDRVDLSAGLDALESHGIDRLMVEGGGELIFSLFADDLVDELSVFVGPMLIG 181
Query: 322 EGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354
P+ + + F + V L +
Sbjct: 182 GRDAPTLADGDGFLEGFPVLDLRDVEQMDGGVLLRW 217
>gi|184154758|ref|YP_001843098.1| cytosine/adenosine deaminase [Lactobacillus fermentum IFO 3956]
gi|227514025|ref|ZP_03944074.1| nucleoside deaminase [Lactobacillus fermentum ATCC 14931]
gi|260663213|ref|ZP_05864105.1| cytosine/adenosine deaminase [Lactobacillus fermentum 28-3-CHN]
gi|183226102|dbj|BAG26618.1| cytosine/adenosine deaminase [Lactobacillus fermentum IFO 3956]
gi|227087611|gb|EEI22923.1| nucleoside deaminase [Lactobacillus fermentum ATCC 14931]
gi|260552405|gb|EEX25456.1| cytosine/adenosine deaminase [Lactobacillus fermentum 28-3-CHN]
Length = 174
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+M A + + +G + ++V G +IGRG HAEV A+ EA
Sbjct: 10 YMKEAFKEANQAALLGEV----PIGAVVVYKGKIIGRGHNMREKFQDATYHAEVLAIMEA 65
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ YVTLEPC
Sbjct: 66 CQALGSWRLEECDLYVTLEPCIMCS 90
>gi|108804483|ref|YP_644420.1| CMP/dCMP deaminase [Rubrobacter xylanophilus DSM 9941]
gi|108765726|gb|ABG04608.1| CMP/dCMP deaminase, zinc-binding protein [Rubrobacter xylanophilus
DSM 9941]
Length = 157
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 29/109 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+D FM A + T +V ++V+D ++ G + G P
Sbjct: 14 SWDEYFMRIAHEVATRS---TCPRLAVGAVVVRDRRILTTGYNGSPSGMPHCDEVGCLIR 70
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE AL +A G R A Y T +PC +
Sbjct: 71 VVDGRESCQRTLHAEQNALIQAAYHGVSVRDAAMYCTHQPCLLCVKMIM 119
>gi|330985033|gb|EGH83136.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 169
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAASALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|15837614|ref|NP_298302.1| hypothetical protein XF1012 [Xylella fastidiosa 9a5c]
gi|9105950|gb|AAF83822.1|AE003939_1 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 167
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALE 61
+M AL + P V +++ +G ++G G T++ HAE+ AL
Sbjct: 13 HIHWMRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGWNYNITSHDPSAHAEIMALR 71
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
AG + R G T YVTLEPC
Sbjct: 72 AAGHQLRNHRMPGCTLYVTLEPCLMC 97
>gi|58581831|ref|YP_200847.1| hypothetical protein XOO2208 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84623733|ref|YP_451105.1| hypothetical protein XOO_2076 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188576614|ref|YP_001913543.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58426425|gb|AAW75462.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84367673|dbj|BAE68831.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521066|gb|ACD59011.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 170
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL + P V LIV +G V+G G ++ HAE
Sbjct: 11 PHAAIDVHWMQHALHLAECAERDHDEIP-VGALIVGAEGNVLGEGWNFNIASHDPSAHAE 69
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ +AG G T YVTLEPC+
Sbjct: 70 IVAMRDAGRRLSNHRLIGCTLYVTLEPCAMC 100
>gi|328954698|ref|YP_004372031.1| tRNA-adenosine deaminase [Coriobacterium glomerans PW2]
gi|328455022|gb|AEB06216.1| tRNA-adenosine deaminase [Coriobacterium glomerans PW2]
Length = 165
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
DARFM AL +R +G + +V +G I R HAE
Sbjct: 13 PDDARFMREALAQARMAAELGEV----PIGAAVVYEGDCIARAHNRRELDGNPSAHAEFV 68
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ +A G T YVT+EPC
Sbjct: 69 AMLKASAVLGRWRLTGCTVYVTVEPCLMC 97
>gi|104782115|ref|YP_608613.1| cytosine deaminase [Pseudomonas entomophila L48]
gi|95111102|emb|CAK15822.1| Cytosine deaminase [Pseudomonas entomophila L48]
Length = 141
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGEE 66
M AA+ +R + + ++V DG +IGRG G H E+ ALE AG +
Sbjct: 1 MQAAIDEARKGLEEGGI--PIGSVLVHDGKIIGRGHNRRVQKGSAILHGEMDALENAGRQ 58
Query: 67 A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ AT Y TL PC+ + ++ ++ G L
Sbjct: 59 PASVYQQATLYTTLSPCAMCSGAILLYGIKRVVIGENETFLGEEQLLKNRGVALDVRHDH 118
Query: 123 GIIVDRMMESEGKIFLHAYL 142
E K L
Sbjct: 119 TCRTLMQQFIEKKPQLWNED 138
>gi|302037080|ref|YP_003797402.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira
defluvii]
gi|300605144|emb|CBK41477.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira
defluvii]
Length = 162
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
P+ D RFM AL +R +G +A L+V +GIVI + T HA
Sbjct: 3 PLDDPDTRFMQQALTLARSAPLIGEV----PIAALLVHEGIVIAQAHNLRETRQDPTAHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV +++A T YVTLEPC+
Sbjct: 59 EVIVIQDAARHMGSWRLINTTLYVTLEPCTMC 90
>gi|237708779|ref|ZP_04539260.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
gi|265755955|ref|ZP_06090422.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
gi|229457205|gb|EEO62926.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
gi|263234033|gb|EEZ19634.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
Length = 155
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M A+ S +V +I KDG +I GV HAEV A+ A
Sbjct: 4 EELMRKAIELSIENVANGGG--PFGAVIAKDGEIIATGVNRVTSQCDPTAHAEVSAIRAA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 ATKLGTFNLSGCEIYTSCEPCPMC 85
>gi|168207992|ref|ZP_02633997.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens E str. JGS1987]
gi|168210758|ref|ZP_02636383.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|168217464|ref|ZP_02643089.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens NCTC 8239]
gi|169342382|ref|ZP_02863448.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens C str. JGS1495]
gi|182626202|ref|ZP_02953960.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens D str. JGS1721]
gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens C str. JGS1495]
gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens E str. JGS1987]
gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens D str. JGS1721]
gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens NCTC 8239]
Length = 166
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AL ++ N V IV D ++G G G P
Sbjct: 10 SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGY---NGFPKGCSDDDLPW 63
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G+ + Y TL PC+
Sbjct: 64 GNKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNEC 108
>gi|192360046|ref|YP_001980851.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
gi|190686211|gb|ACE83889.1| cytosine deaminase [Cellvibrio japonicus Ueda107]
Length = 146
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGC--PHAEVQALEEAGE 65
FM AAL +R + ++V DG ++GRG G HAE+ LE AG
Sbjct: 5 FMQAALEEARKGRREGGI--PIGSVLVIDGRIVGRGHNQRVQKGSCVLHAEMDCLENAGR 62
Query: 66 ----EARGATAYVTLEPCSHYG 83
+ R AT Y TL PC
Sbjct: 63 LKASDYRRATLYSTLSPCDMCS 84
>gi|17232126|ref|NP_488674.1| hypothetical protein alr4634 [Nostoc sp. PCC 7120]
gi|17133771|dbj|BAB76333.1| alr4634 [Nostoc sp. PCC 7120]
Length = 140
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ +IVKD V+ HAE+ +
Sbjct: 4 EYFMRLAIAEAKKGDA------PYGAVIVKDNQVVAFAHNTVARDNDPSAHAEINVIRRL 57
Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPP 87
+ + G + Y T EPC +
Sbjct: 58 TAQLQSFSLAGYSIYTTGEPCPMCAAACV 86
>gi|330969043|gb|EGH69109.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 169
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G ++GRG HAE+ A+ +A + G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIVGRGYNCPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|186681708|ref|YP_001864904.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
PCC 73102]
gi|186464160|gb|ACC79961.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
PCC 73102]
Length = 247
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
K L + F + + D+ L L +T L+V GG
Sbjct: 119 WKGRCLQTLPSTLGTGTQECPPEFEQILVFETPTREIDIPAALKHLANIDITRLVVLGGG 178
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCL 352
+ S + L+D + L +++G P+P+E L + +V L
Sbjct: 179 ELVASLLGLDLIDELWLTVCPLILGGSTAPTPVEGKGFLPDLAPKLQLLEVHTVEQEVFL 238
Query: 353 EYI 355
Y
Sbjct: 239 HYR 241
>gi|66358600|ref|XP_626478.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
gi|46227806|gb|EAK88726.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II]
Length = 373
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 38/113 (33%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++D FM A + + S V +IVKD +I G G P
Sbjct: 220 SRPNWDEYFMKIA-KLASQRSNCVSR--KVGSVIVKDKKIISTGY---NGTPKNMKNCFE 273
Query: 54 -----------------------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAE AL AG ++ GAT YVTL PC
Sbjct: 274 GGCTRCSNPNRVEGKSLETCSCMHAETNALLFAGIDKCIGATIYVTLMPCISC 326
>gi|323350632|ref|ZP_08086294.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
gi|322123314|gb|EFX94999.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EDFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|15836532|ref|NP_301056.1| cytosine deaminase [Chlamydophila pneumoniae J138]
gi|33242370|ref|NP_877311.1| putative cytosine deaminase [Chlamydophila pneumoniae TW-183]
gi|8979374|dbj|BAA99208.1| cytosine deaminase [Chlamydophila pneumoniae J138]
gi|33236881|gb|AAP98968.1| putative cytosine deaminase [Chlamydophila pneumoniae TW-183]
Length = 148
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M A + +R V C+IVKD +I R + HAE+ + A ++
Sbjct: 1 MQQAFKEARKAYDQ--DEVPVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCIGSAAQD 58
Query: 67 ARG-----ATAYVTLEPCSHY 82
Y TLEPC
Sbjct: 59 LDNWRLLDTVLYCTLEPCLMC 79
>gi|326796823|ref|YP_004314643.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
MMB-1]
gi|326547587|gb|ADZ92807.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea
MMB-1]
Length = 159
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++ +IGRG HAE+QA+ +A GAT YVTLEPCS
Sbjct: 24 PVGAIVVQNDEIIGRGFNRPITTCDPTAHAEIQAIRDACANVNNYRLPGATLYVTLEPCS 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|70607877|ref|YP_256747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
acidocaldarius DSM 639]
gi|68568525|gb|AAY81454.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
acidocaldarius DSM 639]
Length = 214
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
++ R + + +S D + S ++ I K + H LRA+ DAI+VG TV D+P
Sbjct: 1 MKSRPYTIIFSTISIDGRLATKTGYSE-LSCPIDKQRQHQLRAEVDAIMVGGNTVRIDNP 59
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT + ++ P+R+I+ L + SKI L V +EN L R +
Sbjct: 60 SLTVKYAKKKDKDPIRVIVSKSLNLDVSSKIFSIPPLTVVYTKSENRSKQYELEKRGVVV 119
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L V L++EGG + S I+ +L D I + S + G G
Sbjct: 120 RRFNELSDVFSDLYESF---NVRRLMIEGGGNLIWSVIHEKLYDEIRVTVSPRIFGNGVS 176
Query: 326 PS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + + + G+++ L YI
Sbjct: 177 LAQGEGFQGDESPRLRLVDAKICQCGNEIHLVYIK 211
>gi|70733728|ref|YP_257368.1| guanine deaminase [Pseudomonas fluorescens Pf-5]
gi|68348027|gb|AAY95633.1| guanine deaminase, putative [Pseudomonas fluorescens Pf-5]
Length = 153
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D ++ A+ +R +V L+V++G V+ V HAE+ A+
Sbjct: 3 DDQHYLQQAVALARRNVEQGGR--PFGALLVRNGRVLAEAVNEIHLSQDPTAHAEMLAIR 60
Query: 62 EA----GEEARGATAYVTLEPCSHY 82
A G Y + +PC
Sbjct: 61 AASRQLGPRLDDCVIYASGQPCPMC 85
>gi|332365640|gb|EGJ43399.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK355]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EDFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|295102136|emb|CBK99681.1| tRNA-adenosine deaminase [Faecalibacterium prausnitzii L2-6]
Length = 162
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D M AAL +R +G V ++ KDG +I T HAE+ A+
Sbjct: 3 DFELMGAALEEARKAAALGEV----PVGAVVAKDGEIISAAHNTRETEKNALHHAELLAI 58
Query: 61 EEAGEEARG-----ATAYVTLEPCSHYG 83
+ A ++ G +VTLEPC
Sbjct: 59 DAACKKLGGWRLWQCELFVTLEPCPMCS 86
>gi|294674558|ref|YP_003575174.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Prevotella ruminicola 23]
gi|294472670|gb|ADE82059.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Prevotella ruminicola 23]
Length = 150
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D R+M AL + + P + ++V V+ R T HAE+QA+
Sbjct: 8 KKDERYMQMALDEAHLAL-EAGEIP-IGAVVVCKDRVVSRAHNLTETLCDVTAHAEMQAI 65
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC+
Sbjct: 66 TAAANTLGGKYLTECTLYVTVEPCTMC 92
>gi|319901465|ref|YP_004161193.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
gi|319416496|gb|ADV43607.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM A++ + ++ +IVKDG ++G+G + HAEV A+
Sbjct: 5 KEFMETAIQLALDNINRGGG--PFGAVIVKDGKIVGQGCNSVTNHLDPTAHAEVMAIRNT 62
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 63 CQALDTFILEGCEIYSSCEPCPMC 86
>gi|325106234|ref|YP_004275888.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
12145]
gi|324975082|gb|ADY54066.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
12145]
Length = 157
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D FM A + + + +IV +G V+GRG HAE+QA
Sbjct: 13 AADEFFMKEAYKEALLAFDKDEV--PIGAIIVANGKVVGRGHNLTERLNDVTAHAEMQAF 70
Query: 61 EEAG-----EEARGATAYVTLEPCSHY 82
A + T YVT+EPC
Sbjct: 71 TSASNTIGAKYLHNCTLYVTVEPCVMC 97
>gi|313126634|ref|YP_004036904.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase
[Halogeometricum borinquense DSM 11551]
gi|312292999|gb|ADQ67459.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Halogeometricum borinquense DSM 11551]
Length = 220
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+ + A S D + + I+G +V +RA SDA+LVG+GTVLADDP LT
Sbjct: 2 HVVVNAATSADGKLSTRRREQIKISGADDFARVDRVRADSDAVLVGVGTVLADDPHLTVD 61
Query: 211 LNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFR 261
++ P R++ D + D++I+ A V++ D V AL
Sbjct: 62 DADYRDERQSDGREPHPARVVADSRARTPTDARILDDAATTYVLVSESAPADRVSALEKT 121
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + L RG+ L+VEGG V S LVD + +Y +V+G
Sbjct: 122 GGTVVTAGDTRVSFPEAFAELEARGIDRLMVEGGGEVIFSLFEDELVDELSVYVGSVVLG 181
Query: 322 EGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354
P+ + ++F + V L Y
Sbjct: 182 GRDAPTLADGDGFVESFPTLDLRDVERIDDGVLLTY 217
>gi|159028687|emb|CAO88158.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 143
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL + G V +IV K G +I +G + HAE+ A+ A
Sbjct: 1 MQLALNLAATAGDRGDV----PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 57 SQVLGNWHLNGCTLYVTLEPCPMC 80
>gi|116329381|ref|YP_799101.1| pyrimidine reductase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330018|ref|YP_799736.1| pyrimidine reductase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116122125|gb|ABJ80168.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116123707|gb|ABJ74978.1| Pyrimidine reductase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 217
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 5/214 (2%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ ++++ +A++ D + ++ K ++ +R+++D +++G ++L DDP
Sbjct: 1 MTSLPNVSINMAMTLDGKVSRPDKRWYGLSSRNDKKRMDEIRSKADVLILGKNSILNDDP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ R + I+L + + + EN VL I
Sbjct: 61 VIHLRYVRDIKDPRPVILLRSGTLPEDKKVFRFSKQPPLIFCLNENYSSVLDNLCSVAEI 120
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + ++L IL G +L+EGG ++ SF S L+ I L +IG+ +
Sbjct: 121 VSLPGNDLSPLEVLKILSEMGYREILLEGGPSLNDSFFRSDLISRIYLTIVPFLIGQKDL 180
Query: 326 PSPLEE-----GYLEKNFMCVRRDYFGSDVCLEY 354
PS + +K + + + +++ L Y
Sbjct: 181 PSIAGGPKEYLNFDQKKWDLISSEVLENEIFLIY 214
>gi|88812724|ref|ZP_01127970.1| guanine deaminase [Nitrococcus mobilis Nb-231]
gi|88789962|gb|EAR21083.1| guanine deaminase [Nitrococcus mobilis Nb-231]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 6 FDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
A FM A+ S + G+ +IV DG V+ G HAEV A
Sbjct: 2 DHAAFMRRAIDLSYEKMIAGIGGP---FGAVIVHDGCVVAEGWNRVWSAMDPTAHAEVVA 58
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ A + + Y + EPC
Sbjct: 59 IRRACRILETYQLADCSIYTSCEPCPMC 86
>gi|306831703|ref|ZP_07464860.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|304426128|gb|EFM29243.1| guanine deaminase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
Length = 172
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+M A++ + + G +IVKDG +I G + H EV A
Sbjct: 21 EDYMQKAIQEAYDGIKKGDGG-----PFGSVIVKDGEIIASGHNMVLAHHDPTAHGEVTA 75
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHYGRSP---PCAQFIIECGIRRVVVCVDDPDVRV 111
+ +AGE+ G T + T EPC + + C I +
Sbjct: 76 IRKAGEKLGTHDLSGTTLFTTGEPCPMCLAACLWANIDKIYYGCTIADNAMIGFRDQRFD 135
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
G + K +V + K+F
Sbjct: 136 ELMGGRKNLPKDYLVQLNHDDCLKLFKDYQEMTHN 170
>gi|193076995|gb|ABO11743.2| CMP/dCMP deaminase zinc-binding [Acinetobacter baumannii ATCC
17978]
Length = 160
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
F+ A+ + ++ +IVKDG VI GV HAE+ A+ A
Sbjct: 5 QEFLRQAIELAYNNIEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAELLAIRVA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + + + PC
Sbjct: 63 SQVLGTANLEGCSVFASGHPCPMC 86
>gi|124485467|ref|YP_001030083.1| hypothetical protein Mlab_0643 [Methanocorpusculum labreanum Z]
gi|124363008|gb|ABN06816.1| bifunctional deaminase-reductase domain protein [Methanocorpusculum
labreanum Z]
Length = 225
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ ++ +H RA+ DAI+VG T+ D+ LT R+ +P+R+I +
Sbjct: 30 KILMKHMSHEAEILLHETRAEYDAIMVGSSTIRIDNSFLTVRMVE--GENPLRVIPNSLA 87
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGR 285
L L++ + T V+ V+E AF + ++++ C ++ + +
Sbjct: 88 DLPLEANVFDTTKARTVLAVSEKAPKDRIDAFTARGVDVVVCGEDRVDFVQLMNILSAKY 147
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMC 340
+ L++EGG + ++ LVD I L ++G PS + L
Sbjct: 148 QIKKLIIEGGPTLNWHMLHHGLVDEIRLIHMPFIVGGSDTPSLVGGMPLASENDMIKLDL 207
Query: 341 VRRDYFGSDVCLEYIG 356
+G+++ EY
Sbjct: 208 RSTKMYGTNLVTEYRV 223
>gi|224536998|ref|ZP_03677537.1| hypothetical protein BACCELL_01874 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521365|gb|EEF90470.1| hypothetical protein BACCELL_01874 [Bacteroides cellulosilyticus
DSM 14838]
Length = 188
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M A+ + +V +I ++G +I GV + HAEV A+ A
Sbjct: 37 EELMRKAIVLAEENVDNGGG--PFGAVIARNGEIIATGVNRVTAEHDPTAHAEVSAIRAA 94
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
++ G Y + EPC
Sbjct: 95 CKKLGTFDLSGCEIYTSCEPCPMC 118
>gi|172038865|ref|YP_001805366.1| cytosine deaminase [Cyanothece sp. ATCC 51142]
gi|171700319|gb|ACB53300.1| probable cytosine deaminase [Cyanothece sp. ATCC 51142]
Length = 150
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D FM AA+ ++ + T P + ++VK +IGRG G P HAE+ L
Sbjct: 8 MDE-FMKAAIAEAKQGL-KTGGIP-IGSVLVKHNKIIGRGHNKRVQDGDPITHAEIDCLR 64
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG + Y TL PC
Sbjct: 65 NAGRIGNYQDTVLYSTLMPCYLC 87
>gi|299770668|ref|YP_003732694.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter sp. DR1]
gi|298700756|gb|ADI91321.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter sp. DR1]
Length = 160
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+F+ A+ + ++ ++VK+G VI GV HAE+ A+ A
Sbjct: 5 EQFLRNAIELAYNNIEKGGR--PFGAVVVKNGEVIASGVNQILTTNDPTAHAELLAIRAA 62
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G + Y + PC
Sbjct: 63 SQILGSANLEGCSVYASGHPCPMC 86
>gi|172037934|ref|YP_001804435.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142]
gi|171699388|gb|ACB52369.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142]
Length = 236
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 4/165 (2%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
G ++ D L R + P+ I++ K++ + + + ++ E
Sbjct: 67 AFGTTVIVKDAELLANRKQNNKPSQPINIVVSASGKIADNLRFFSQPVPHWLMTTQEGTK 126
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
+ + I +L + L L G++ L + GG + + + L+D + L
Sbjct: 127 EQTSKFEKVLTFPEIEAGKINLVEALKRLKELGLSHLAIIGGGELVANCLEQNLIDELWL 186
Query: 314 YRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
++G P+P+E + + + ++ L Y
Sbjct: 187 TVCPYLLGGKTAPTPVEGMGFLSSHAQKLELLSLEQKEQEIFLHY 231
>gi|257463951|ref|ZP_05628336.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
gi|317061475|ref|ZP_07925960.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
gi|313687151|gb|EFS23986.1| deoxycytidylate deaminase [Fusobacterium sp. D12]
Length = 160
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 29/109 (26%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M +D FM AL + N V IV D +IG G
Sbjct: 1 MKRKDYITWDEYFMGVALLSAMRSK---DPNTQVGACIVSPDKKIIGLGYNGLPKGCEDD 57
Query: 48 ----AYGGC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + + YV L PC
Sbjct: 58 EFPWEREGEFLETKYPYVCHAELNAILNSTQSLKNCSIYVALFPCHECS 106
>gi|79328917|ref|NP_001031959.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|332006386|gb|AED93769.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 204
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F++ A+ + V +IV + V+ HAEV A+
Sbjct: 47 DSDHKFLTQAVEEAYKGV-DCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAI 105
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 106 REACKKLNKIELSECEIYASCEPCPMC 132
>gi|66806365|ref|XP_636905.1| adenosine deaminase, tRNA-specific [Dictyostelium discoideum AX4]
gi|60465302|gb|EAL63394.1| adenosine deaminase, tRNA-specific [Dictyostelium discoideum AX4]
Length = 254
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
S +FM AA+ + G VAC+IV G +I RG G HAE++
Sbjct: 45 SNHKKFMEAAIEEGYKALKEGEV----PVACVIVYKGEIIARGSNKTNIKKNGTRHAELE 100
Query: 59 ALEEAGEE-----------ARGATAYVTLEPCSHYG 83
A ++ YVT+EPC
Sbjct: 101 AFDQIFLNKELNDRFKDSLLEECDLYVTVEPCLMCS 136
>gi|18310048|ref|NP_561982.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens str. 13]
gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13]
Length = 166
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AL ++ N V IV D ++G G G P
Sbjct: 10 SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGY---NGFPKGCSDDDLPW 63
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G+ + Y TL PC+
Sbjct: 64 GNKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNEC 108
>gi|242280630|ref|YP_002992759.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM
2638]
gi|242123524|gb|ACS81220.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM
2638]
Length = 145
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEE 62
D FM A + ++ + ++V+DG +IG G G P H E+ +
Sbjct: 3 DMEFMEEAYKLAKKSFDQGGL--PIGSVLVRDGKIIGSGHNQRVQKGDPIAHGEMDCIRN 60
Query: 63 AGEE--ARGATAYVTLEPCSHYG 83
AG + + T Y TL PC
Sbjct: 61 AGRQKTYKDTTIYTTLSPCMMCS 83
>gi|292655495|ref|YP_003535392.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
volcanii DS2]
gi|291371668|gb|ADE03895.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax
volcanii DS2]
Length = 219
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCV 341
RGV L+VEGG + S + LVD + LY +VIG P+ +
Sbjct: 145 RGVDRLMVEGGGELIFSLFEAGLVDELTLYVGSLVIGGRDAPTLADGDGFVSDFPRLSLR 204
Query: 342 RRDYFGSDVCLEY 354
+ V L Y
Sbjct: 205 DVERVDDGVLLTY 217
>gi|227903275|ref|ZP_04021080.1| nucleoside deaminase [Lactobacillus acidophilus ATCC 4796]
gi|227869080|gb|EEJ76501.1| nucleoside deaminase [Lactobacillus acidophilus ATCC 4796]
Length = 231
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S +M A+ ++ G + ++V G +IG G
Sbjct: 64 MLSSDEKKTYMQLAIDKAKEAEKQGEV----PIGAVVVDPTGKIIGTGYNRRELDEDSTQ 119
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + + +VTLEPC
Sbjct: 120 HAEMIAIKEACKNLGMWRLIDCSLFVTLEPCPMC 153
>gi|148543562|ref|YP_001270932.1| tRNA-adenosine deaminase [Lactobacillus reuteri DSM 20016]
gi|184152969|ref|YP_001841310.1| cytosine/adenosine deaminase [Lactobacillus reuteri JCM 1112]
gi|227363478|ref|ZP_03847600.1| tRNA-adenosine deaminase [Lactobacillus reuteri MM2-3]
gi|325681912|ref|ZP_08161430.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri MM4-1A]
gi|148530596|gb|ABQ82595.1| tRNA-adenosine deaminase [Lactobacillus reuteri DSM 20016]
gi|183224313|dbj|BAG24830.1| cytosine/adenosine deaminase [Lactobacillus reuteri JCM 1112]
gi|227071492|gb|EEI09793.1| tRNA-adenosine deaminase [Lactobacillus reuteri MM2-3]
gi|324978556|gb|EGC15505.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri MM4-1A]
Length = 170
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+FM A+ ++ L + ++V DG VIGRG HAE+ A+ EA
Sbjct: 12 QKFMKMAIAEAKQARIL--DEVPIGAIVVHDGQVIGRGHNMREKFQDVTYHAEMLAIMEA 69
Query: 64 G-----EEARGATAYVTLEPCSHYG 83
YVTLEPC
Sbjct: 70 CTNLGSWRLEDCDLYVTLEPCIMCS 94
>gi|257064835|ref|YP_003144507.1| deoxycytidylate deaminase [Slackia heliotrinireducens DSM 20476]
gi|256792488|gb|ACV23158.1| deoxycytidylate deaminase [Slackia heliotrinireducens DSM 20476]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A S+ T +V +IVKD ++ G
Sbjct: 11 SWDEYFMHLAFEVSKRS---TCLRRAVGAVIVKDRRILATGYNGVPSGLRHCDETGCLRQ 67
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + G++ Y+T +PC +
Sbjct: 68 QLNVPSGQRHEICRGLHAEQNAIIQAARYGIDIAGSSIYITTQPCVVCTKM 118
>gi|163838825|ref|YP_001623230.1| tRNA-specific adenosine deaminase [Renibacterium salmoninarum
ATCC 33209]
gi|162952301|gb|ABY21816.1| tRNA-specific adenosine deaminase [Renibacterium salmoninarum
ATCC 33209]
Length = 161
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 1 MPV----SSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY---- 49
MP S D +M AAL ++ + + + +++ G V+G G
Sbjct: 1 MPFESEPSDADKFRSWMGAALVEAQAALQT--EDVPIGAVVLDASGNVVGTGRNRREADG 58
Query: 50 GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV AL A E G T VTLEPC+
Sbjct: 59 DPTAHAEVLALRAAAEATGSWRLDGCTLVVTLEPCAMC 96
>gi|295425582|ref|ZP_06818269.1| cytidine/deoxycytidylate deaminase [Lactobacillus amylolyticus
DSM 11664]
gi|295064598|gb|EFG55519.1| cytidine/deoxycytidylate deaminase [Lactobacillus amylolyticus
DSM 11664]
Length = 166
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 3 VSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
+ S D + +M A+ ++ + ++V DG V+G+G HA
Sbjct: 1 MLSNDEKKKYMQLAIIEAKKA--ERQDEVPIGAIVVAPDGQVVGKGYNRRELDQDATQHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A+ EA + + +VTLEPC
Sbjct: 59 EMIAIREACKNIGFWRLIDCSLFVTLEPCPMC 90
>gi|116750214|ref|YP_846901.1| zinc-binding CMP/dCMP deaminase [Syntrophobacter fumaroxidans
MPOB]
gi|116699278|gb|ABK18466.1| tRNA-adenosine deaminase [Syntrophobacter fumaroxidans MPOB]
Length = 158
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAE 56
P++ D FM AL + + V ++ G V+ RG HAE
Sbjct: 3 PLTDHD-YFMGIALEEALAGREESEV--PVGAVLAGPGGEVLARGHNRPIALCDPTAHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ L EA G+ YVTLEPC+
Sbjct: 60 ILVLREAAAAAGNYRLPGSVLYVTLEPCAMC 90
>gi|104782249|ref|YP_608747.1| deaminase [Pseudomonas entomophila L48]
gi|95111236|emb|CAK15956.1| putative deaminase [Pseudomonas entomophila L48]
Length = 152
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 8 ARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+M AL +R G ++V G VI R V HAE+QA+
Sbjct: 4 ETYMREALDLARANIQAGGR-----PFGAVLVYQGRVIARAVNEIHSTQDPTRHAEMQAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A E GA Y + PC
Sbjct: 59 RQASEVLGRARLDGAEIYASGHPCPMC 85
>gi|330805063|ref|XP_003290507.1| hypothetical protein DICPUDRAFT_81234 [Dictyostelium purpureum]
gi|325079386|gb|EGC32989.1| hypothetical protein DICPUDRAFT_81234 [Dictyostelium purpureum]
Length = 259
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+FM A++ + G VAC+IV + +I RG G HAE++A
Sbjct: 43 HIKFMKEAVKEGEKALKEGEV----PVACVIVHNNQIIARGSNKTNIKKNGTRHAELEAF 98
Query: 61 ------EEAGEEARG-----ATAYVTLEPCSHY 82
+E E + YVT+EPC
Sbjct: 99 DQIFLNKELNERFKDTLLVECDLYVTVEPCLMC 131
>gi|256848137|ref|ZP_05553581.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
gi|256715197|gb|EEU30174.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN]
Length = 169
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
FM AA+ + +G + +IVKDG +IG G HAE+ A+ EA
Sbjct: 12 FMRAAINEAHQAELLGEV----PIGAVIVKDGQIIGAGHNMREKYQQSIYHAEILAIMEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
+ YVTLEPC
Sbjct: 68 CDALHSWRLEDCDLYVTLEPCIMCS 92
>gi|511885|gb|AAA96138.1| nitrogen fixation protein [Bradyrhizobium japonicum]
Length = 142
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
M AL+ + G P + C++V++ VI T Y HAE+ AL EA
Sbjct: 1 MDLALKTAENA-GKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAKK 58
Query: 64 --GEEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 59 IGSERLVDCDLYVTLEPCTMC 79
>gi|259508111|ref|ZP_05751011.1| tRNA-specific adenosine deaminase [Corynebacterium efficiens
YS-314]
gi|259164334|gb|EEW48888.1| tRNA-specific adenosine deaminase [Corynebacterium efficiens
YS-314]
Length = 159
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
D R M AL +R T + V +I DG ++ T HAE+ A
Sbjct: 12 QDERRMRHALEIARQ----TPPGDVPVGAVIYAPDGQILATATNRRETDRDPTAHAEIIA 67
Query: 60 LEEA------GEEARGATAYVTLEPCSHY 82
L A G T VTLEPCS
Sbjct: 68 LRCAARRFTDGWRLTDCTLVVTLEPCSMC 96
>gi|118590701|ref|ZP_01548102.1| cytidine and deoxycytidylate deaminase [Stappia aggregata IAM
12614]
gi|118436677|gb|EAV43317.1| cytidine and deoxycytidylate deaminase [Stappia aggregata IAM
12614]
Length = 154
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 1 MP--VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGC 52
MP S+ FM AL + G V ++V+ G VI R
Sbjct: 2 MPTAFSNQ-TSFMDLALEEAVKAADRGEV----PVGAVLVRGGDVIARDGNRTLELNDPT 56
Query: 53 PHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAEV + A + YVTLEPC
Sbjct: 57 AHAEVLVIRSACALAGSQRLPDCDLYVTLEPCPMC 91
>gi|25026753|ref|NP_736807.1| hypothetical protein CE0197 [Corynebacterium efficiens YS-314]
gi|23492032|dbj|BAC17007.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 160
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQA 59
D R M AL +R T + V +I DG ++ T HAE+ A
Sbjct: 13 QDERRMRHALEIARQ----TPPGDVPVGAVIYAPDGQILATATNRRETDRDPTAHAEIIA 68
Query: 60 LEEA------GEEARGATAYVTLEPCSHY 82
L A G T VTLEPCS
Sbjct: 69 LRCAARRFTDGWRLTDCTLVVTLEPCSMC 97
>gi|153008613|ref|YP_001369828.1| zinc-binding CMP/dCMP deaminase [Ochrobactrum anthropi ATCC
49188]
gi|151560501|gb|ABS13999.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum anthropi ATCC
49188]
Length = 156
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D ++ A+R + +V ++VK G VI GV HAE+ AL
Sbjct: 2 SNDRTYLDQAIRLAFDNVEQGGR--PFGAVVVKGGKVIATGVNRMQADCDPTAHAELLAL 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ G Y + +PC
Sbjct: 60 RAAGKTLQSPRLDGCEVYASGQPCPMC 86
>gi|322371685|ref|ZP_08046228.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
paucihalophilus DX253]
gi|320548570|gb|EFW90241.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus
paucihalophilus DX253]
Length = 210
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 10/212 (4%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+ + A+S D + V I+G ++V LR +SDAI+VG+GTVLADDP LT
Sbjct: 2 HVVVNAAMSADGKLSSRQREQVAISGADDFDRVDDLRVESDAIVVGVGTVLADDPSLTAD 61
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIY 269
+P+R++ D + LD++++ V + + V AL ++ +
Sbjct: 62 E----GVNPVRVVADSKARTPLDARVLDDRADTLVFVAESAPNRNVRALREAGADVVVAG 117
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
L + + L RG ++VEGG + S + LVD + LY +VIG P+
Sbjct: 118 NGRVALGQAFSELESRGTKRVMVEGGGELIFSLFDGGLVDELRLYVGSVVIGGRDAPTLA 177
Query: 330 EEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356
+ + + V L Y+
Sbjct: 178 DGDGFVERRSFPDLDLDSVERVDDGVLLRYLV 209
>gi|271967965|ref|YP_003342161.1| pyrimidine reductase riboflavin biosynthesis-like protein
[Streptosporangium roseum DSM 43021]
gi|270511140|gb|ACZ89418.1| Pyrimidine reductase riboflavin biosynthesis- like protein
[Streptosporangium roseum DSM 43021]
Length = 240
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 1/119 (0%)
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
VI A ++ + D DL + L RG+ +L EGG +
Sbjct: 122 YARTIVITCEAAPAERREEAAGHADVIVAGRDRVDLAAAVKELGERGLGRVLCEGGPKIN 181
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ LVD + L S ++IG L+ + YI K+
Sbjct: 182 AQLAAAGLVDELCLTLSPMLIGGDAAR-ILDGPASLTRLRLAHVLEEEGFLFTRYIRKS 239
>gi|148241392|ref|YP_001226549.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
RCC307]
gi|147849702|emb|CAK27196.1| Pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
RCC307]
Length = 216
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ LL L G +L+ GGA +A + + LVD + L +V+G P
Sbjct: 130 WQGLLAQLNAEGHQRVLLLGGAQLAGALLQEDLVDELQLTICPLVLGGEHSWLPPSAQPQ 189
Query: 335 EKNFMCVRRDYFGS-DVCLEYIGK 357
++ + G +V L Y K
Sbjct: 190 ADRWLLQEQRSLGDGEVLLRYQRK 213
>gi|78186386|ref|YP_374429.1| cytosine deaminase, putative [Chlorobium luteolum DSM 273]
gi|78166288|gb|ABB23386.1| tRNA-adenosine deaminase [Chlorobium luteolum DSM 273]
Length = 153
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 20/94 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCP 53
M + FM A R +R G V +++ V+GRG
Sbjct: 1 MDFT----YFMELAFREARKAFEAGEV----PVGAVVLDASSHVVGRGYNQVETLSDATA 52
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ AL A + T VTLEPC
Sbjct: 53 HAEIIALTAAMATLGNKYLNDCTLVVTLEPCPMC 86
>gi|326317008|ref|YP_004234680.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323373844|gb|ADX46113.1| CMP/dCMP deaminase zinc-binding protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 484
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D +M AL+ V ++V+ G ++ RG A HAE+ AL
Sbjct: 19 DEDWMRVALQ--EAAEAAARGEIPVGAVVVRGGELVARGSNAPIAGHDPTAHAEIVALRA 76
Query: 63 A-----GEEARGATAYVTLEPCSHYG 83
A G T YVTLEPC+
Sbjct: 77 AAGRLGNYRLDGCTLYVTLEPCAMCS 102
>gi|294647204|ref|ZP_06724803.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294809184|ref|ZP_06767900.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
gi|292637491|gb|EFF55910.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294443578|gb|EFG12329.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
Length = 145
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 21/141 (14%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
D FM AL + G V ++V +I R T HAE+Q
Sbjct: 3 DDIYFMKQALIEAGKAAERGEV----PVGAVVVCKERIIARAHNLTETLNDVTAHAEMQV 58
Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ A G+ T YVT+EPC CA I ++V +D
Sbjct: 59 ITAAANVLGGKYLNECTLYVTVEPCV------MCAGAIAWAQTGKLVFGAEDEKRGYQKY 112
Query: 115 GLQWLSQKGIIVDRMMESEGK 135
L K ++V +M E
Sbjct: 113 AGSALHPKTVVVKGIMADECA 133
>gi|222478886|ref|YP_002565123.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Halorubrum lacusprofundi ATCC 49239]
gi|222451788|gb|ACM56053.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Halorubrum lacusprofundi ATCC 49239]
Length = 236
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFM 339
RG+ L+VEGG V +S + LVD + +Y +VIG P+ +
Sbjct: 155 AERGIDRLMVEGGGEVIYSCFAAGLVDELHVYVGSMVIGGRDAPTLADGEGFTEAFPRLD 214
Query: 340 CVRRDYFGSDVCLEYIGKN 358
V + + L Y +
Sbjct: 215 LVDTERLDDGIVLSYEVGD 233
>gi|84495278|ref|ZP_00994397.1| possible cytidine and deoxycytidylate deaminase [Janibacter sp.
HTCC2649]
gi|84384771|gb|EAQ00651.1| possible cytidine and deoxycytidylate deaminase [Janibacter sp.
HTCC2649]
Length = 143
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + G P V +++ G VIG G HAEV AL A
Sbjct: 1 MRHALDLAVRA-GSAGDVP-VGAVVLDPGGAVIGEGWNLREVDADPTAHAEVVALRAAAR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 59 HTGSWRLEDCTLVVTLEPCPMC 80
>gi|183220792|ref|YP_001838788.1| riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189910892|ref|YP_001962447.1| pyrimidine deaminase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775568|gb|ABZ93869.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779214|gb|ABZ97512.1| Riboflavin biosynthesis protein RibD [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 430
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 71/392 (18%), Positives = 132/392 (33%), Gaps = 53/392 (13%)
Query: 17 FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA------------LEEA 63
+G T NP V+ ++ G I + T G HAE + ++
Sbjct: 16 LGFLAMGKTGGNPPVSAVLTNSIGEPIEKAHTQGYGGNHAERELYSLVEQKHSHSQIQTD 75
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
V+LEPC+H+G++PPC +++ + +++ DP+ V + ++G
Sbjct: 76 ENSLSDTILSVSLEPCTHFGKTPPCRDLVLQHKPKELLLGWKDPNPMVQSGDWKLYLEQG 135
Query: 124 IIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181
V + +L +L R + + +K A S + ++
Sbjct: 136 TKVRLDPMLANTSLPYLQGFLKRMQTGKPWVWIKSATSTEGNYVSKSFTKERVSSIEMDL 195
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK------ 235
+ LLRA+ DA+ VG T D+P L R+ S + ++
Sbjct: 196 YLQLLRAKFDAVAVGPNTTKVDEPSLHFRITEEMIQSVAPCKRETELVPFFEAATNLFSS 255
Query: 236 -IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--------- 285
T + + E + N ++L L +
Sbjct: 256 LCRWTKESVTIHQLEEERYQPYRVFVLDPNRMPSDHFFTKQRELNERLGKKLCLFFLLTN 315
Query: 286 ---------GVTSLLVEGGAAVAHSFINSRLV----DSIILYRSQIVIGEGGIPSPL-EE 331
G++S + E S N+ L+ D L+ +G+ GI + L E
Sbjct: 316 SIKKKDNLFGISSQMKE----TLESLSNTHLISVNQDEGDLFL--KTLGKLGINTLLCEA 369
Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363
G NF ++ + D LE + +
Sbjct: 370 GSFFPNF--LKESFTDEDCTLEIRNHKKSIPD 399
>gi|167590679|ref|ZP_02383067.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
Length = 119
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMC 340
RG+ L VE G + S + VD +++Y + ++G
Sbjct: 37 RGINELHVEAGHKLNGSLLREHCVDELLVYLAPSLLGADAAGMFDLAAPASLDARARLSF 96
Query: 341 VRRDYFGSDVCL 352
+ G D+ +
Sbjct: 97 HSIERIGDDLRI 108
>gi|160891295|ref|ZP_02072298.1| hypothetical protein BACUNI_03744 [Bacteroides uniformis ATCC 8492]
gi|156859516|gb|EDO52947.1| hypothetical protein BACUNI_03744 [Bacteroides uniformis ATCC 8492]
Length = 138
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA--- 63
M AL + G P V ++V +I R T HAE+QA+ A
Sbjct: 1 MKQALLEAHKA-GERGEVP-VGAVVVCKDRIIARAHNLTETLTDVTAHAEMQAITAAAAT 58
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G+ T YVT+EPC CA I + R+V +D Q L
Sbjct: 59 LGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGRLVFGAEDEKRGYQRYASQALHP 112
Query: 122 KGIIV 126
K +V
Sbjct: 113 KTQVV 117
>gi|256392662|ref|YP_003114226.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
gi|256358888|gb|ACU72385.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
Length = 223
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 10 FMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
++ A+ ++ G +IV+DG VI GV HAE+ A+ E
Sbjct: 76 WLGQAIALAQDNVEAGGW-----PFGAVIVRDGAVIATGVNEVLADGDPTAHAEMLAIRE 130
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A GA Y + EPC
Sbjct: 131 ACRVLKDINLAGAVLYASCEPCPMC 155
>gi|148378037|ref|YP_001252578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153931005|ref|YP_001382436.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153937691|ref|YP_001385989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A str. Hall]
gi|153941479|ref|YP_001389392.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum F str. Langeland]
gi|168181142|ref|ZP_02615806.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum NCTC 2916]
gi|226947243|ref|YP_002802334.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|148287521|emb|CAL81583.1| putative cytosine deaminase [Clostridium botulinum A str. ATCC
3502]
gi|152927049|gb|ABS32549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152933605|gb|ABS39104.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A str. Hall]
gi|152937375|gb|ABS42873.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum F str. Langeland]
gi|182668031|gb|EDT80010.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum NCTC 2916]
gi|226841341|gb|ACO84007.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|295317500|gb|ADF97877.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum F str. 230613]
gi|322804299|emb|CBZ01849.1| tRNA-specific adenosine-34 deaminase [Clostridium botulinum
H04402 065]
Length = 145
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++ A+ ++ + G V +IVK+ +I + HAE+ A++EA
Sbjct: 4 YIEYAIIEAKKALAIGEV----PVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+G YVTLEPC+
Sbjct: 60 CNTIHNWRLKGCKMYVTLEPCAMC 83
>gi|110801187|ref|YP_695768.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens ATCC 13124]
gi|168215286|ref|ZP_02640911.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens CPE str. F4969]
gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens ATCC 13124]
gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens CPE str. F4969]
Length = 166
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AL ++ N V IV D ++G G G P
Sbjct: 10 SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGY---NGFPKGCSDDDLPW 63
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G+ + Y TL PC+
Sbjct: 64 GNKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNEC 108
>gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
Length = 509
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M AL +R G V ++V +G V G HAE+ L + G
Sbjct: 378 MGLALEEARKAYAEGEV----PVGAVLVLEGEVHGE-RNRVEAMEDPTAHAEMLLLRKLG 432
Query: 65 EEARGATAYVTLEPCSHYGRSPP 87
+ ARG YVTLEPC +
Sbjct: 433 KRARGGRLYVTLEPCRMCHHALM 455
>gi|330807694|ref|YP_004352156.1| deaminase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327375802|gb|AEA67152.1| putative deaminase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 165
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+DG +IGRG + HAE+ A+ A + G+T YVTLEPCS
Sbjct: 36 PVGAVLVQDGEIIGRGFNCPISGHDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCS 95
Query: 81 HY 82
Sbjct: 96 MC 97
>gi|298490596|ref|YP_003720773.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
gi|298232514|gb|ADI63650.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
Length = 143
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE- 65
M AA+ ++ + ++V++G ++G+G G P HAE+ L AG
Sbjct: 5 MQAAISEAKQGRDEGGI--PIGSVLVRNGKILGKGHNKRVQDGDPVTHAEIDCLRNAGRL 62
Query: 66 -EARGATAYVTLEPCSHY 82
+G T Y TL PC
Sbjct: 63 GNYKGITLYSTLMPCYLC 80
>gi|152997998|ref|YP_001342833.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1]
gi|150838922|gb|ABR72898.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1]
Length = 162
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V DG +IG G A HAE+QA+ A + GAT YVTLEPCS
Sbjct: 24 PVGAIVVLDGEIIGEGYNAPISLCDPTAHAEIQAIRMACKTINNYRLPGATLYVTLEPCS 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|189425440|ref|YP_001952617.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
gi|189421699|gb|ACD96097.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
Length = 145
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AA+ + + + +IV + +IGRG G H E+ ALE AG
Sbjct: 4 FMQAAIEEAEAGLAEGGI--PIGSVIVHNNRIIGRGHNRRVQQGSAILHGEMDALERAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC
Sbjct: 62 QPASVYREAVLYTTLSPCPMCS 83
>gi|119511953|ref|ZP_01631050.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nodularia spumigena CCY9414]
gi|119463373|gb|EAW44313.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nodularia spumigena CCY9414]
Length = 143
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
FM AL ++ +IVK V+ G HAE+ +
Sbjct: 4 EYFMQIALEEAKKGDA------PYGAVIVKHQEVVAVAHNTVKGNSDPSAHAEINVIRSL 57
Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPP 87
+ + G + Y T EPC +
Sbjct: 58 TAKLKSPSLEGYSIYTTGEPCPMCATACV 86
>gi|312194017|ref|YP_004014078.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311225353|gb|ADP78208.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 235
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 18/226 (7%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R ++ L A S D I A + ++ ++V +RA DAILVG GT+ ADDP+
Sbjct: 1 MTRPYVVLSCATSIDGYIDDASETRLRLSNEADFDRVDEVRAGCDAILVGAGTIRADDPK 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP--------------VIIVTEND 252
L R + R + K++L + V+ +
Sbjct: 61 LLIRSPARRRARMSRGLPSHPLKVTLTATGDLDPSARFFTAGDPDGTDGAGQVVYTATDA 120
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ D DL +L L RGV LLVEGG AV F+ L D +
Sbjct: 121 AARARARLGAVATVVEAGDPIDLPTVLADLATRGVARLLVEGGGAVHTQFLTEDLADELH 180
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
L + +G+ P + G + G V L Y
Sbjct: 181 LVVAPFFVGDPRAPRFVGPGTFPHDPTHPARLAETTQLGDVVLLRY 226
>gi|325298986|ref|YP_004258903.1| Guanine deaminase [Bacteroides salanitronis DSM 18170]
gi|324318539|gb|ADY36430.1| Guanine deaminase [Bacteroides salanitronis DSM 18170]
Length = 155
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M A+ S +V +I ++G +I G + HAEV A+ A
Sbjct: 4 EELMRKAIELSVRNVAEGGG--PFGAVIARNGEIISTGTNRVTPDHDPTAHAEVSAIRAA 61
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 CRELGTFDLSGCEIYTSCEPCPMC 85
>gi|227824209|ref|YP_002828182.1| CMP/dCMP deaminase, zinc-binding [Sinorhizobium fredii NGR234]
gi|227343211|gb|ACP27429.1| CMP/dCMP deaminase, zinc-binding [Sinorhizobium fredii NGR234]
Length = 171
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
RF+ A+ +R ++ ++V++G VIGRGV HAE+ A+ A
Sbjct: 23 ERFLREAVSLARTNLEKGGR--PFGAVVVRNGEVIGRGVNEMLDTGDPTSHAELNAVRAA 80
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ AT Y + PC
Sbjct: 81 AKTIASLRLEDATVYASGHPCPMC 104
>gi|225681358|gb|EEH19642.1| tRNA-specific adenosine deaminase subunit TAD2 [Paracoccidioides
brasiliensis Pb03]
Length = 197
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
FM AL + G T V C++V + +IG G+ + G HAE A+
Sbjct: 17 HEYFMRKALDMGEEALASGET----PVGCVLVHNEEIIGSGMNDTNKSMNGTRHAEFLAV 72
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EE YVT+EPC
Sbjct: 73 EEVLRSHPRSIFHETDLYVTVEPCIMC 99
>gi|218438113|ref|YP_002376442.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
gi|218170841|gb|ACK69574.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
Length = 147
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ +R + + ++VKDG ++GRG HAE+ L AG
Sbjct: 8 FMQAAIAEARQGLQEGGI--PIGSVLVKDGKILGRGHNKRVQDNDPVTHAEIDCLRNAGR 65
Query: 66 --EARGATAYVTLEPCSHY 82
+ + Y TL PC
Sbjct: 66 VGQYQDTILYSTLMPCYLC 84
>gi|153815558|ref|ZP_01968226.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC
27756]
gi|317502188|ref|ZP_07960362.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088753|ref|ZP_08337663.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847200|gb|EDK24118.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC
27756]
gi|316896397|gb|EFV18494.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330407276|gb|EGG86779.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 162
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQ 58
D ++M AA++ ++ + T + C+IV +G +IGRG HAE++
Sbjct: 8 KLDEKYMRAAIKQAQKAYAINET----PIGCVIVYEGKIIGRGYNRRNTDKDPLAHAEIK 63
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A + T YVTLEPC
Sbjct: 64 AIKKASKKMGDWRLEQCTMYVTLEPCQMC 92
>gi|62317152|ref|YP_223005.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 1 str. 9-941]
gi|83269135|ref|YP_418426.1| cytidine/deoxycytidylate deaminase [Brucella melitensis biovar
Abortus 2308]
gi|161620282|ref|YP_001594168.1| CMP/dCMP deaminase zinc-binding [Brucella canis ATCC 23365]
gi|189022411|ref|YP_001932152.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
abortus S19]
gi|254691365|ref|ZP_05154619.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 6 str. 870]
gi|254695335|ref|ZP_05157163.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 3 str. Tulya]
gi|254698431|ref|ZP_05160259.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|254699495|ref|ZP_05161323.1| cytidine and deoxycytidylate deaminase family protein [Brucella
suis bv. 5 str. 513]
gi|254702619|ref|ZP_05164447.1| cytidine and deoxycytidylate deaminase family protein [Brucella
suis bv. 3 str. 686]
gi|254706250|ref|ZP_05168078.1| cytidine and deoxycytidylate deaminase family protein [Brucella
pinnipedialis M163/99/10]
gi|254711456|ref|ZP_05173267.1| cytidine and deoxycytidylate deaminase family protein [Brucella
pinnipedialis B2/94]
gi|254712059|ref|ZP_05173870.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti M644/93/1]
gi|254715129|ref|ZP_05176940.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti M13/05/1]
gi|254731878|ref|ZP_05190456.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 4 str. 292]
gi|256014990|ref|YP_003104999.1| cytidine and deoxycytidylate deaminase family protein [Brucella
microti CCM 4915]
gi|256029913|ref|ZP_05443527.1| cytidine and deoxycytidylate deaminase family protein [Brucella
pinnipedialis M292/94/1]
gi|256043124|ref|ZP_05446066.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|256059562|ref|ZP_05449761.1| cytidine and deoxycytidylate deaminase family protein [Brucella
neotomae 5K33]
gi|256111894|ref|ZP_05452850.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis bv. 3 str. Ether]
gi|256158082|ref|ZP_05456000.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti M490/95/1]
gi|256252963|ref|ZP_05458499.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti B1/94]
gi|256256550|ref|ZP_05462086.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 9 str. C68]
gi|260166985|ref|ZP_05753796.1| cytidine and deoxycytidylate deaminase family protein [Brucella
sp. F5/99]
gi|260544385|ref|ZP_05820206.1| cytidine/deoxycytidylate deaminase [Brucella abortus NCTC 8038]
gi|260564346|ref|ZP_05834831.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 1
str. 16M]
gi|260568473|ref|ZP_05838942.1| cytidine/deoxycytidylate deaminase [Brucella suis bv. 4 str. 40]
gi|260756977|ref|ZP_05869325.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 6
str. 870]
gi|260759649|ref|ZP_05871997.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 4
str. 292]
gi|260762892|ref|ZP_05875224.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260882788|ref|ZP_05894402.1| cytidine/deoxycytidylate deaminase [Brucella abortus bv. 9 str.
C68]
gi|261215706|ref|ZP_05929987.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 3
str. Tulya]
gi|261216837|ref|ZP_05931118.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M13/05/1]
gi|261220056|ref|ZP_05934337.1| cytidine/deoxycytidylate deaminase [Brucella ceti B1/94]
gi|261313693|ref|ZP_05952890.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
M163/99/10]
gi|261319065|ref|ZP_05958262.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
B2/94]
gi|261319704|ref|ZP_05958901.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M644/93/1]
gi|261323530|ref|ZP_05962727.1| cytidine/deoxycytidylate deaminase [Brucella neotomae 5K33]
gi|261749950|ref|ZP_05993659.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 5 str.
513]
gi|261753203|ref|ZP_05996912.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 3 str.
686]
gi|261756372|ref|ZP_06000081.1| cytidine/deoxycytidylate deaminase [Brucella sp. F5/99]
gi|265986931|ref|ZP_06099488.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
M292/94/1]
gi|265989556|ref|ZP_06102113.1| CMP/dCMP deaminase zinc-binding protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265993342|ref|ZP_06105899.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 3
str. Ether]
gi|265996597|ref|ZP_06109154.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M490/95/1]
gi|294853219|ref|ZP_06793891.1| cytosine deaminase [Brucella sp. NVSL 07-0026]
gi|62197345|gb|AAX75644.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus bv. 1 str. 9-941]
gi|82939409|emb|CAJ12363.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
melitensis biovar Abortus 2308]
gi|161337093|gb|ABX63397.1| CMP/dCMP deaminase zinc-binding [Brucella canis ATCC 23365]
gi|189020985|gb|ACD73706.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Brucella
abortus S19]
gi|255997650|gb|ACU49337.1| cytidine and deoxycytidylate deaminase family protein [Brucella
microti CCM 4915]
gi|260097656|gb|EEW81530.1| cytidine/deoxycytidylate deaminase [Brucella abortus NCTC 8038]
gi|260151989|gb|EEW87082.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 1
str. 16M]
gi|260155138|gb|EEW90219.1| cytidine/deoxycytidylate deaminase [Brucella suis bv. 4 str. 40]
gi|260669967|gb|EEX56907.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 4
str. 292]
gi|260673313|gb|EEX60134.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260677085|gb|EEX63906.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 6
str. 870]
gi|260872316|gb|EEX79385.1| cytidine/deoxycytidylate deaminase [Brucella abortus bv. 9 str.
C68]
gi|260917313|gb|EEX84174.1| CMP/dCMP deaminase zinc-binding protein [Brucella abortus bv. 3
str. Tulya]
gi|260918640|gb|EEX85293.1| cytidine/deoxycytidylate deaminase [Brucella ceti B1/94]
gi|260921926|gb|EEX88494.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M13/05/1]
gi|261292394|gb|EEX95890.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M644/93/1]
gi|261298288|gb|EEY01785.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
B2/94]
gi|261299510|gb|EEY03007.1| cytidine/deoxycytidylate deaminase [Brucella neotomae 5K33]
gi|261302719|gb|EEY06216.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
M163/99/10]
gi|261736356|gb|EEY24352.1| cytidine/deoxycytidylate deaminase [Brucella sp. F5/99]
gi|261739703|gb|EEY27629.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 5 str.
513]
gi|261742956|gb|EEY30882.1| CMP/dCMP deaminase zinc-binding protein [Brucella suis bv. 3 str.
686]
gi|262550894|gb|EEZ07055.1| CMP/dCMP deaminase zinc-binding protein [Brucella ceti M490/95/1]
gi|262764212|gb|EEZ10244.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 3
str. Ether]
gi|263000225|gb|EEZ12915.1| CMP/dCMP deaminase zinc-binding protein [Brucella melitensis bv.
1 str. Rev.1]
gi|264659128|gb|EEZ29389.1| CMP/dCMP deaminase zinc-binding protein [Brucella pinnipedialis
M292/94/1]
gi|294818874|gb|EFG35874.1| cytosine deaminase [Brucella sp. NVSL 07-0026]
Length = 157
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|332308193|ref|YP_004436044.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175522|gb|AEE24776.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 145
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+FM AA+ ++ + + ++V +IGRG G P H E+ ALE AG
Sbjct: 3 KFMQAAIDEAKQGLAEGGI--PIGSVLVYQDEIIGRGHNRRVQSGSPILHGEMDALENAG 60
Query: 65 EEA----RGATAYVTLEPCSHYG 83
+ + +T Y TL PCS
Sbjct: 61 RQPASVYKASTLYTTLSPCSMCS 83
>gi|256423014|ref|YP_003123667.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
gi|256037922|gb|ACU61466.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
Length = 159
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
RFM A+ SR + ++V+ ++GRG HAEV A+ +A
Sbjct: 7 KRFMQMAVDLSREGM-EKGDGGPFGAIVVRGEEIVGRGWNQVLSFNDPTAHAEVVAIRDA 65
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ + EPC
Sbjct: 66 CANLNTFQLHDCEIFTSCEPCPMC 89
>gi|225686059|ref|YP_002734031.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis ATCC 23457]
gi|256262820|ref|ZP_05465352.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 2
str. 63/9]
gi|225642164|gb|ACO02077.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis ATCC 23457]
gi|263092641|gb|EEZ16862.1| cytidine/deoxycytidylate deaminase [Brucella melitensis bv. 2
str. 63/9]
gi|326410383|gb|ADZ67447.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis M28]
Length = 157
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|32455578|ref|NP_862061.1| putative reductase [Streptomyces lividans]
gi|28883229|gb|AAO61162.1| putative reductase [Streptomyces lividans]
gi|89357154|gb|ABD72320.1| pQC542.16 [Streptomyces lividans]
Length = 226
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 11/224 (4%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L A S D + + ++ ++V +RA+SDAIL+G T+ D+P
Sbjct: 1 MSTRPYVILSAATSVDGYLDDTSPDRLRLSNEADFDRVDQVRAESDAILIGATTMRRDNP 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSK-------IIKTALLAPVIIVTENDDPVLAL 258
L + + K+++ + +++ + +
Sbjct: 61 RLLVNSEQRRAQRVAAGKPEYPLKVTVTASGDLSADLKFWHHGGQKLVLTVDGAAEKVRT 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ D L L RG+ L+VEGG + + L D + L + +
Sbjct: 121 TLDGLADTVSVGPEFDWVLALEELGRRGIKRLMVEGGGTIHTQLMAQNLADEVHLAIAPL 180
Query: 319 VIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
++G+ L G + V + Y K
Sbjct: 181 LVGQPEAARFLGAADYPGGSTARMRVLEVRPIDDVVLIRYAPKE 224
>gi|167586888|ref|ZP_02379276.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia ubonensis
Bu]
Length = 191
Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
PVS+ D FM L + + V ++V+ VI RG G HAE+
Sbjct: 24 PVSARDTHFMR--LAQAAADEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 81
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 82 AALRMAAQHLQNYRMPGCELYVTLEPCLMC 111
>gi|159042516|ref|YP_001541768.1| deaminase-reductase domain-containing protein [Caldivirga
maquilingensis IC-167]
gi|157921351|gb|ABW02778.1| bifunctional deaminase-reductase domain protein [Caldivirga
maquilingensis IC-167]
Length = 211
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+R+++D F++ L+SK + A V + + LA + + +
Sbjct: 60 TYTPKTGKQILRVLIDGAFRVPLESKFFNSPAPALVAVTERAPRAKIELARKAGIEVMEF 119
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPS 327
D++ LL+ L RG+ +LVEGG AV F + L+D + L + ++G+G I
Sbjct: 120 DKQVDVEVLLSKLTERGIKKVLVEGGGAVFWQFFSRNLIDEVRLTIAPFMMGKGTSLIEG 179
Query: 328 PLEEGYLEKNFMCVRRDY--FGSDVCLEYIGK 357
+ F V+ G +V + Y +
Sbjct: 180 DSLKIDQSPRFKPVKWYLCECGREVVIHYTRE 211
>gi|261345369|ref|ZP_05973013.1| guanine deaminase [Providencia rustigianii DSM 4541]
gi|282566412|gb|EFB71947.1| guanine deaminase [Providencia rustigianii DSM 4541]
Length = 154
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +F+ A+ + +V ++V DG V+ GV HAE+ AL +
Sbjct: 3 DNQFLQQAILLATENVNAGGR--PFGAVVVYDGSVVATGVNQMLERNDPTAHAELLALRQ 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AGE Y + +PC
Sbjct: 61 AGEVLGKVRLDDCVVYASGQPCPMC 85
>gi|125975000|ref|YP_001038910.1| guanine deaminase [Clostridium thermocellum ATCC 27405]
gi|256005114|ref|ZP_05430084.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM
2360]
gi|281418582|ref|ZP_06249601.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|125715225|gb|ABN53717.1| Guanine deaminase [Clostridium thermocellum ATCC 27405]
gi|255990965|gb|EEU01077.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM
2360]
gi|281407666|gb|EFB37925.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|316939161|gb|ADU73195.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
DSM 1313]
Length = 154
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
FM A++ + + P +IVKD +I R HAE+ A+ +A +
Sbjct: 4 FMKEAVKEAVSGMRQNHGGP-FGAVIVKDNEIIARAHNEVIKNNDPTDHAEMIAIRKAAK 62
Query: 66 EAR-----GATAYVTLEPCSHY 82
+ Y + EPC
Sbjct: 63 KLSRFDLGDCELYSSCEPCPMC 84
>gi|259506366|ref|ZP_05749268.1| guanine deaminase [Corynebacterium efficiens YS-314]
gi|259166044|gb|EEW50598.1| guanine deaminase [Corynebacterium efficiens YS-314]
Length = 155
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
F+ A+ SR + +I + +I HAE+ A+ A
Sbjct: 5 FLHRAVELSRRGM-EAGQGGPFGAVIARGDRIIAEAYNTVLATKDPTNHAEIVAIRSAAR 63
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G YV +PC
Sbjct: 64 VLGTVDLTGCELYVNAQPCPMC 85
>gi|292669313|ref|ZP_06602739.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
gi|292649154|gb|EFF67126.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541]
Length = 158
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 27/105 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA-YGGCP----- 53
M +S +D FM A+ + + V IV + ++G G GC
Sbjct: 1 MIIS-WDEYFMGVAIFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDSVYP 56
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G YV+L PC+
Sbjct: 57 WGRTGDFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNEC 101
>gi|121533374|ref|ZP_01665202.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans
Nor1]
gi|121307933|gb|EAX48847.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans
Nor1]
Length = 149
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
D +M AL +R +G + ++V DG V+ + HAE+
Sbjct: 2 DDYDYMGIALEEARKAYAIGEV----PIGAVLVMDGAVVAKAHNRRETWHDATAHAEIIV 57
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+++A + GA YVT+EPC
Sbjct: 58 IQQACKLLGRWRLTGAALYVTIEPCPMC 85
>gi|168039996|ref|XP_001772482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676279|gb|EDQ62764.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 353
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 5 SFDA---RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
+ D +FM A +R + V C+IV DG VIGRG HAE+
Sbjct: 160 ADDESIMKFMKLAFIEAREALARLEV--PVGCVIVNDGEVIGRGSNCTNETRNATRHAEM 217
Query: 58 QALEEA----------------GEEARGATAYVTLEPCSHY 82
A++ E + YVT EPC
Sbjct: 218 VAIDMVLSKWQQLSATPNVNPSTEGFQQCDLYVTCEPCIMC 258
>gi|110801506|ref|YP_698456.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens SM101]
gi|110682007|gb|ABG85377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
perfringens SM101]
Length = 166
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AL ++ N V IV D ++G G G P
Sbjct: 10 SWDEYFMGVALISAKRSK---DPNTQVGACIVDNDNKIVGIGY---NGFPKGCSDDDLPW 63
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G+ + Y TL PC+
Sbjct: 64 GNKGEFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNEC 108
>gi|307202968|gb|EFN82184.1| Deoxycytidylate deaminase [Harpegnathos saltator]
Length = 181
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 39/179 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
++D FM+ A ++ V IV D +IG G G P
Sbjct: 14 AWDEYFMAVAFLSAQRSK---DPYTQVGACIVNNDNKIIGIGY---NGMPIGCSDDVFPW 67
Query: 54 ----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAEV A L + + + T YV L PC + I
Sbjct: 68 NKGSYSSLDSKYLYVCHAEVNAVLNKNSSDCKDCTIYVALFPC-----NECAKVIIQSGI 122
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
+ + D + + GI + + KI ++ + + +K
Sbjct: 123 RTVIYMSDKSSDKVQTVAAKRMFDAAGIKYRQYIPKNKKIEINFDDIDCMNQSPETPVK 181
>gi|260592642|ref|ZP_05858100.1| tRNA-specific adenosine deaminase [Prevotella veroralis F0319]
gi|260535412|gb|EEX18029.1| tRNA-specific adenosine deaminase [Prevotella veroralis F0319]
Length = 150
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D FM A+ + P + ++V +I R T HAE+QA+
Sbjct: 8 KKDMYFMQRAIDEA-KAAYREGEIP-IGAVVVCRDRIIARAHNLTETLNDVTAHAEMQAI 65
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
A G+ + T YVT+EPC CA I + R+V D
Sbjct: 66 TIAESELGGKYLQDCTLYVTVEPCI------MCAGAIGWAQLHRIVYGCPDIKRGYHEYA 119
Query: 116 LQWLSQK 122
+ K
Sbjct: 120 PKAFHPK 126
>gi|303289711|ref|XP_003064143.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Micromonas pusilla CCMP1545]
gi|226454459|gb|EEH51765.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Micromonas pusilla CCMP1545]
Length = 371
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 36/109 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAYGGCP---------- 53
S+D FMS A ++ N V +IV VI G G G P
Sbjct: 134 SWDDYFMSVAFLSAQRSK---DPNKQVGAVIVGADKVISGVGY---NGFPRGCSDRSLPW 187
Query: 54 ------------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + + GAT YVT+ PC+
Sbjct: 188 AKRSPTDDPMETKYAYVCHAEMNAIMNKNSQSLNGATMYVTMYPCNECS 236
>gi|257483266|ref|ZP_05637307.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 160
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 44/110 (40%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P+R+++D ++ LD+ + V + + DL+K
Sbjct: 49 PPLRVLIDGRLRVPLDAPFFQAGSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRK 108
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
L+ L RGV +LVE G +A +F LVD ++ + +G P
Sbjct: 109 LMVELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPF 158
>gi|170755371|ref|YP_001779653.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum B1 str. Okra]
gi|169120583|gb|ACA44419.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum B1 str. Okra]
Length = 145
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
++ A+ + + G V +IVK+ +I + HAE+ A++EA
Sbjct: 4 YIEYAIIEAEKALAIGEV----PVGAIIVKENKIIAKSHNLKESLKDPTAHAEILAIKEA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+G YVTLEPC+
Sbjct: 60 CNTIHNWRLKGCKMYVTLEPCAMC 83
>gi|298675909|ref|YP_003727659.1| CMP/dCMP deaminase zinc-binding protein [Methanohalobium
evestigatum Z-7303]
gi|298288897|gb|ADI74863.1| CMP/dCMP deaminase zinc-binding protein [Methanohalobium
evestigatum Z-7303]
Length = 155
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S D F+ A ++ L + V +IV+D +I G
Sbjct: 9 SIDEYFLEIASVVAKRATCLRNK---VGAVIVRDKRIISTGYNGAPSNLEHCLDIGCIRQ 65
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G AT Y T +PC +
Sbjct: 66 QYNIESGTQHEKCRAVHAEQNAIIQAALHGVSTDNATIYCTHQPCILCAKM 116
>gi|282899006|ref|ZP_06306988.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
[Cylindrospermopsis raciborskii CS-505]
gi|281196146|gb|EFA71061.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein
[Cylindrospermopsis raciborskii CS-505]
Length = 154
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
MS AL+ ++ G P V C+IV G +IG+G HAE+ A+ A
Sbjct: 1 MSEALKLAQIA-GDAGEVP-VGCVIVNPQGNLIGQGENRKQRDQDPTAHAEIIAIRSAAR 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 59 TLQNWHLDQCTLYVTLEPCPMC 80
>gi|226324153|ref|ZP_03799671.1| hypothetical protein COPCOM_01931 [Coprococcus comes ATCC 27758]
gi|225207702|gb|EEG90056.1| hypothetical protein COPCOM_01931 [Coprococcus comes ATCC 27758]
Length = 67
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57
+ + D ++M A+R ++ + + C+IV G +IGRG T HAE+
Sbjct: 3 KILTEDEKYMKEAIRQAKKAWKI--EEVPIGCVIVYQGKIIGRGYNRRTTDKNPLAHAEI 60
Query: 58 QALEE 62
A+++
Sbjct: 61 SAIKK 65
>gi|121609574|ref|YP_997381.1| CMP/dCMP deaminase [Verminephrobacter eiseniae EF01-2]
gi|121554214|gb|ABM58363.1| CMP/dCMP deaminase, zinc-binding [Verminephrobacter eiseniae
EF01-2]
Length = 482
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 2 PVSSF-DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
P+S+ DA +M AL + G V ++VKDG +I G + H
Sbjct: 24 PMSADPDAHWMRQALAQAEDAARAGEV----PVGAVVVKDGQLIATGRNAPLARHDPSAH 79
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
AE+ AL A G + YVTLEPC+
Sbjct: 80 AEILALRAAARRLGNYRLDGCSLYVTLEPCAMCS 113
>gi|187934949|ref|YP_001887626.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
Eklund 17B]
gi|187723102|gb|ACD24323.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str.
Eklund 17B]
Length = 152
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
F+ A +R G + +IVKD IVI + T HAE+ A+ +A
Sbjct: 3 FLDIAKEEARIAMSKGEV----PIGAVIVKDDIVISKAHNLKETLKDATAHAEILAIRKA 58
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ +G YVTLEPCS
Sbjct: 59 AKFLGDWRLKGTEMYVTLEPCSMC 82
>gi|54022042|ref|YP_116284.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
gi|54013550|dbj|BAD54920.1| putative reductase/deaminase [Nocardia farcinica IFM 10152]
Length = 373
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 14/132 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNP---SVACLIVKDGIVIGRGVTAY-GGCPHAEVQAL 60
D RF+ A+ + +P SV +IV DG I G + HAE AL
Sbjct: 226 ERDRRFLRRAIELAHAS----PPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAAL 281
Query: 61 EEA---GEEARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ AT Y TLEPCS GR P + + R V+ + V+
Sbjct: 282 NKLDPRDPRLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCV 341
Query: 115 GLQWLSQKGIIV 126
G++ L + G+ V
Sbjct: 342 GVEKLREHGVDV 353
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE- 335
LL L RGV L+VEGG V +F+ + L D + L + +++G G P ++
Sbjct: 139 ALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAPLLVGAAGAPRFVDPADFPD 198
Query: 336 KNFMCVRRDYFGSDVCLEYIGK 357
+ G L Y+ +
Sbjct: 199 RRLTLAEVSRVGDMAVLRYLLR 220
>gi|325688867|gb|EGD30875.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK115]
Length = 156
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EVFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|289450291|ref|YP_003474389.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184838|gb|ADC91263.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 165
Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 27/103 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--------- 53
S+D FM AL ++ N V IV + +I G GC
Sbjct: 9 SWDEYFMGVALLSAQRSK---DPNTQVGACIVSPNNRIISVGYNGLPYGCSDETFPWERE 65
Query: 54 ------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ G GA YV L PC+
Sbjct: 66 GDYLSTKYPYVCHAELNAILNNPGAILHGARIYVDLFPCNECS 108
>gi|224025654|ref|ZP_03644020.1| hypothetical protein BACCOPRO_02394 [Bacteroides coprophilus DSM
18228]
gi|224018890|gb|EEF76888.1| hypothetical protein BACCOPRO_02394 [Bacteroides coprophilus DSM
18228]
Length = 155
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
++ D M A+ S +V +I ++G ++ GV HAEV
Sbjct: 1 MTKEDL--MRKAIELSIRNVAEGGG--PFGAVIARNGEIVATGVNRVTPDCDPTAHAEVS 56
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A + + G Y + EPC
Sbjct: 57 AIRAAAKVLGTFDLSGCEIYTSCEPCPMC 85
>gi|115452727|ref|NP_001049964.1| Os03g0321900 [Oryza sativa Japonica Group]
gi|108707878|gb|ABF95673.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
protein, expressed [Oryza sativa Japonica Group]
gi|113548435|dbj|BAF11878.1| Os03g0321900 [Oryza sativa Japonica Group]
gi|218192723|gb|EEC75150.1| hypothetical protein OsI_11352 [Oryza sativa Indica Group]
Length = 183
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE--- 61
FM AL +++ + V C+IV+DG VI G HAE++A++
Sbjct: 7 EFMELALEQAKFALDNLEV--PVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILL 64
Query: 62 -----------EAGEEARGATAYVTLEPCSHY 82
+ E+ YVT EPC
Sbjct: 65 REWQGMGLDQPQVAEKFARCDLYVTCEPCIMC 96
>gi|330959126|gb|EGH59386.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 169
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D FM + G V ++V+ G +IGRG HAE+ A+
Sbjct: 10 SKDQHFMRE--ALALAAQGALLGEVPVGAVLVQHGEIIGRGYNCPISGSDPSAHAEMMAI 67
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G+T YVTLEPCS
Sbjct: 68 RDAAKALDNYRLPGSTLYVTLEPCSMC 94
>gi|328675327|gb|AEB28002.1| tRNA-specific adenosine-34 deaminase [Francisella cf. novicida
3523]
Length = 153
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
M S+ D FM A + G + ++V+D +I
Sbjct: 1 MSNYSNEDIFFMQKAYEQALLAHQAGEV----PIGAVLVRDSQIIAENFNQTITLNDPTA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ L A YVTLEPC
Sbjct: 57 HAEILVLRSAALEVGNYRLINTKLYVTLEPCIMC 90
>gi|254412813|ref|ZP_05026586.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
gi|196180548|gb|EDX75539.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
Length = 186
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
+M+ +L ++ G P V +I+ + +I G HAE+ AL
Sbjct: 13 HRHWMNRSLAIAQSA-GEAGEVP-VGAVIIDNQDNLIATGENRRERDRDPTAHAEILALR 70
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
AG+ T YVTLEPC+
Sbjct: 71 AAGQALNTWHLNTCTLYVTLEPCAMCS 97
>gi|58336712|ref|YP_193297.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus
NCFM]
gi|58254029|gb|AAV42266.1| cytidine-deoxycytidylate deaminase [Lactobacillus acidophilus
NCFM]
Length = 168
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S +M A+ ++ G + ++V G +IG G
Sbjct: 1 MLSSDEKKTYMQLAIDKAKEAEKQGEV----PIGAVVVDPTGKIIGTGYNRRELDEDSTQ 56
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A++EA + + +VTLEPC
Sbjct: 57 HAEMIAIKEACKNLGMWRLIDCSLFVTLEPCPMC 90
>gi|199598355|ref|ZP_03211775.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
gi|199590808|gb|EDY98894.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
Length = 155
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
FM+ A ++ +V + P C+IVK+G VI R + H E+ A+ +AG
Sbjct: 6 FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVISRAHNQVLVDHDPTAHGEITAIRKAGQ 64
Query: 65 ----EEARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 65 ALGTHDLSGCELYTSAMPCPMC 86
>gi|22298002|ref|NP_681249.1| cytosine deaminase [Thermosynechococcus elongatus BP-1]
gi|22294180|dbj|BAC08011.1| cytosine deaminase [Thermosynechococcus elongatus BP-1]
Length = 193
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
+ D FM+AA+ + + + ++V+ G +IGRG G P HAE+ L
Sbjct: 44 TMDE-FMAAAIAEAEQGLQEGGI--PIGSVLVRHGQIIGRGHNQRVQRGSPILHAEIDCL 100
Query: 61 EEAGE--EARGATAYVTLEPCSHY 82
AG Y TL PC
Sbjct: 101 ANAGRIGRYDDTVLYSTLMPCYLC 124
>gi|153006601|ref|YP_001380926.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5]
gi|152030174|gb|ABS27942.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5]
Length = 150
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL +R G V + V +G V+GRG A HAE+ A+++A
Sbjct: 1 MQEALALARGAAERGEV----PVGAVAVFEGRVVGRGANAREAAHDPTAHAELLAIQDAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T YVTLEPC+
Sbjct: 57 RALGRWRLTGVTVYVTLEPCAMC 79
>gi|92113300|ref|YP_573228.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
salexigens DSM 3043]
gi|91796390|gb|ABE58529.1| bifunctional deaminase-reductase-like protein [Chromohalobacter
salexigens DSM 3043]
Length = 283
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 7/215 (3%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+ ++ S D I S +TG S+ +H LRA DA+L+G GT A
Sbjct: 65 PCCATPGRFVIGQLGQSLDGRIATVSGASHYVTGEASRVHLHRLRALVDAVLIGAGTACA 124
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
DDP L+ R H+P+R+ILDP+ ++ + + AP + +T + P AL
Sbjct: 125 DDPRLSVRHVS--GHNPVRVILDPNGRVPATQGVFQND-EAPTLHITRHPLPRGALGAHV 181
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ L L RG+ +LVEGG F+ +D + + + ++IG
Sbjct: 182 DTCVVEDAADLTPAALCRTLAARGLRRVLVEGGGQTVSRFLADGELDRLHVVVAPLLIGS 241
Query: 323 GGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEY 354
G P+ + R G D +
Sbjct: 242 -GRPAVSLAEIETLDTALRPPCRTFAMGDDTLFDL 275
>gi|307154712|ref|YP_003890096.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
gi|306984940|gb|ADN16821.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
Length = 147
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
FM AA+ ++ + + ++VKDG ++GRG HAE+ L AG
Sbjct: 7 HFMQAAIAEAKQGLQEGGI--PIGSVLVKDGQIVGRGHNKRVQDNDPVTHAEIDCLRNAG 64
Query: 65 E--EARGATAYVTLEPCSHY 82
+ + Y TL PC
Sbjct: 65 RIGQYGDSILYSTLMPCYLC 84
>gi|70732252|ref|YP_262008.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
fluorescens Pf-5]
gi|68346551|gb|AAY94157.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
fluorescens Pf-5]
Length = 162
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V DG VIGRG HAE+ A+ EA + G+T YVTLEPCS
Sbjct: 36 PVGAVLVLDGQVIGRGYNCPISGSDPSAHAEMVAIREAAQAVSNYRLPGSTLYVTLEPCS 95
Query: 81 HY 82
Sbjct: 96 MC 97
>gi|328463817|gb|EGF35361.1| guanine deaminase [Lactobacillus rhamnosus MTCC 5462]
Length = 127
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
FM+ A ++ +V + P C+IVK+G VI R + H E+ A+ +AG
Sbjct: 6 FMAMANEEAKANVNGSDGGP-FGCVIVKNGQVISRAHNQVLVDHDPTAHGEITAIRKAGQ 64
Query: 65 ----EEARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 65 ALGTHDLSGCELYTSAMPCPMC 86
>gi|15241124|ref|NP_198157.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|14532498|gb|AAK63977.1| AT5g28050/F15F15_120 [Arabidopsis thaliana]
gi|22137296|gb|AAM91493.1| AT5g28050/F15F15_120 [Arabidopsis thaliana]
gi|332006385|gb|AED93768.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 185
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F++ A+ + V +IV + V+ HAEV A+
Sbjct: 28 DSDHKFLTQAVEEAYKGV-DCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAI 86
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 87 REACKKLNKIELSECEIYASCEPCPMC 113
>gi|324989861|gb|EGC21804.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK353]
gi|325686683|gb|EGD28709.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK72]
Length = 156
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63
FM AL+ + + + C++VK+G +IGRG A HAE+ A+EEA
Sbjct: 10 EVFMREALKEAEIAL--AHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEA 67
Query: 64 GE-----EARGATAYVTLEPCSHYG 83
T +VT+EPC
Sbjct: 68 NRHENSWRLLDTTLFVTIEPCVMCS 92
>gi|294507525|ref|YP_003571583.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
ruber M8]
gi|294343853|emb|CBH24631.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
ruber M8]
Length = 459
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 64/291 (21%), Positives = 110/291 (37%), Gaps = 14/291 (4%)
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
+E + +G + R + R+ + + S
Sbjct: 161 KIESLAEHGVEITERISLEPHVNRHNAEYLRTKVNRMRHILDLGPANGHAQGNAHGTSLR 220
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ + + +TL A S D I +PI+ + H LRA D IL
Sbjct: 221 DLKQRIDRYFAEKGQPFVTLTYAQSLDGSIASKSGTPLPISSEQALRFTHQLRALHDGIL 280
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VGIGTVLADDP LT R N P+ I+LD + D++++ P+I+ + N DP
Sbjct: 281 VGIGTVLADDPRLTVRHND--GTHPVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADP 338
Query: 255 VLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
++ LL L R +S++VEGG ++ SF+ +
Sbjct: 339 DRKERLEAHGGTVIELSCGPEGGICVRTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQ 398
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353
+I+ + + +G S L + +++ ++G D+ LE
Sbjct: 399 RVIVTVAPMFVGGTAALSSLAPEEQDTHARSDFPRLDNIQQRWYGEDLVLE 449
>gi|212528774|ref|XP_002144544.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
18224]
gi|210073942|gb|EEA28029.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
18224]
Length = 354
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IV+D VI G GGCP
Sbjct: 191 TWDQYFMQLASLAAQRSNCMKR---RVGCVIVRDRRVISTGYNGTPRNITNCNEGGCPRC 247
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 248 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYCDTCPCLTC 294
>gi|23499966|ref|NP_699406.1| cytidine and deoxycytidylate deaminase family protein [Brucella
suis 1330]
gi|23463547|gb|AAN33411.1| cytidine and deoxycytidylate deaminase family protein [Brucella
suis 1330]
Length = 157
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILIIRQAGEM 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|313901005|ref|ZP_07834493.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
gi|312953963|gb|EFR35643.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
Length = 164
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--------- 53
++D FM A ++ + V +IV + V+ G GC
Sbjct: 8 TWDEYFMGLAHLSAKRSK---DPSTQVGAVIVSSEHRVVSIGYNGFPNGCSDDEFPWDRE 64
Query: 54 ------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV+L PC+
Sbjct: 65 GDFGNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNEC 105
>gi|302348951|ref|YP_003816589.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
gi|302329363|gb|ADL19558.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15]
Length = 215
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 7/210 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R + + +S D I S ++ H LRA SDA+LVG T + D+P L
Sbjct: 1 MRPYTIIFSTMSVDGRIATEEGFSR-LSCDEDFKIQHELRAWSDAVLVGANTAIKDNPSL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--LALAFRKKNI 265
T R +P+R+++D K+ + +I +++ I
Sbjct: 60 TVR--KAVGKNPLRVVVDASLKVPPTLDMFSIPGKGVIITTEDHNGEELAKYKERGIVII 117
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
DL+ + L GV L++EGG ++ F+ LVD + + S IV G G
Sbjct: 118 RAGVGPEVDLRTAVRALFEMGVRRLMIEGGGTTSYRFLKEGLVDELWITLSPIVFGS-GT 176
Query: 326 PSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
E L ++ G V L Y
Sbjct: 177 SIINGERSLLQDLYLRELKVLCGGWVHLRY 206
>gi|149174160|ref|ZP_01852788.1| Cytosine deaminase [Planctomyces maris DSM 8797]
gi|148847140|gb|EDL61475.1| Cytosine deaminase [Planctomyces maris DSM 8797]
Length = 145
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALE 61
D FM AA+ + + ++V +G +IGRG G H E+ ALE
Sbjct: 1 MDE-FMQAAIEEAEKGRDAGGV--PIGSVLVYEGKIIGRGHNQRQQKGSAILHGEMSALE 57
Query: 62 EAGEEA----RGATAYVTLEPCSHYGRSPPCAQ 90
+AG + R + Y TL PC + Q
Sbjct: 58 DAGRQPARVYRNSVIYTTLSPCPMCSGAIRLYQ 90
>gi|311234063|gb|ADP86917.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio vulgaris
RCH1]
Length = 214
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSR--WHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQAL 60
R M AL +R G V ++V K G +IGRG HAE+ AL
Sbjct: 67 ERLMDEALAEARLAQAEGEV----PVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVAL 122
Query: 61 EE-----AGEEARGATAYVTLEPCSHY 82
A G VTLEPC
Sbjct: 123 RMAATTTANYRLGGTFLVVTLEPCLMC 149
>gi|29830723|ref|NP_825357.1| cytidine/deoxycytidine deaminase [Streptomyces avermitilis
MA-4680]
gi|29607836|dbj|BAC71892.1| putative cytidine/deoxycytidine deaminase [Streptomyces
avermitilis MA-4680]
Length = 142
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + V +++ DG VI RG HAEV A+ A E
Sbjct: 1 MRLALTEAVRAAESADV--PVGAVVLAPDGSVIARGHNEREATGDPTAHAEVLAVRRAAE 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 RLGRWRLSGCTLVVTLEPCTMC 80
>gi|320528437|ref|ZP_08029599.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Solobacterium moorei F0204]
gi|320131351|gb|EFW23919.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Solobacterium moorei F0204]
Length = 164
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA-------------YG 50
S+D FM A + N V IV D V+ G
Sbjct: 9 SWDEYFMGLAHLSALRSK---DPNTKVGAAIVDDNHRVVSVGYNGFPKGCSDEVFPWGRD 65
Query: 51 GCP---------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G T YV+L PC+
Sbjct: 66 GDTLDSKYAFVVHAELNAILNSKWPVVGCTIYVSLFPCNEC 106
>gi|171691995|ref|XP_001910922.1| hypothetical protein [Podospora anserina S mat+]
gi|170945946|emb|CAP72747.1| unnamed protein product [Podospora anserina S mat+]
Length = 353
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 38/111 (34%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+DA FM+ A ++ + V C+IV+D VI G G P
Sbjct: 195 SWDAYFMALAELAAQRANCMKR---RVGCVIVRDKRVISTGY---NGTPRGLVNCGEGGC 248
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y T PC
Sbjct: 249 DRCNAGQGSGHGLTTCLCIHAEENALLEAGRERVREGAVLYCTTHPCLTCS 299
>gi|260549627|ref|ZP_05823845.1| guanine deaminase [Acinetobacter sp. RUH2624]
gi|260407420|gb|EEX00895.1| guanine deaminase [Acinetobacter sp. RUH2624]
Length = 160
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + F+ AL + +V +IVKDG VI GV HAE
Sbjct: 1 MKENQM---FLRQALELAYHNVEKGGR--PFGAVIVKDGKVIASGVNQILTTNDPTAHAE 55
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A + G + + + PC
Sbjct: 56 LLAIRAASQVLGTANLEGCSVFASGHPCPMC 86
>gi|225628666|ref|ZP_03786700.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti str. Cudo]
gi|237816711|ref|ZP_04595703.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus str. 2308 A]
gi|225616512|gb|EEH13560.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ceti str. Cudo]
gi|237787524|gb|EEP61740.1| cytidine and deoxycytidylate deaminase family protein [Brucella
abortus str. 2308 A]
Length = 171
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 30 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 87
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 88 LGSERLIDCDLYVTLEPCAMC 108
>gi|307354384|ref|YP_003895435.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus
petrolearius DSM 11571]
gi|307157617|gb|ADN36997.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus
petrolearius DSM 11571]
Length = 148
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
RFM+AA+ ++ + ++V+DG +IG G HAE+ L AG
Sbjct: 7 RFMTAAIIEAKTGHDEGGI--PIGAVLVRDGKIIGSGHNRRIQENDPIIHAEIDCLRNAG 64
Query: 65 E--EARGATAYVTLEPCSHY 82
+ T Y TL PC
Sbjct: 65 RIGSYKDTTLYSTLMPCYLC 84
>gi|145511355|ref|XP_001441605.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408855|emb|CAK74208.1| unnamed protein product [Paramecium tetraurelia]
Length = 158
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCP 53
M + D ++M AL + +G + V C+IV DG ++ + +
Sbjct: 1 MELQKEDILKYMKMALEQAE--LGRQNKEVPVGCVIVNRNDGKIVEKAYNNTNKSKNATQ 58
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
H E+ + + +VT EPC G+
Sbjct: 59 HCEIICINRMNRDLEDCILFVTCEPCIMCGQ 89
>gi|94498766|ref|ZP_01305314.1| CMP/dCMP deaminase, zinc-binding protein [Sphingomonas sp. SKA58]
gi|94421775|gb|EAT06828.1| CMP/dCMP deaminase, zinc-binding protein [Sphingomonas sp. SKA58]
Length = 152
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
M AL +R + + ++ +DG++IG G HAE+ A+ A
Sbjct: 11 MRRALELARAAQ--AANEVPIGAVVTRDGVIIGEGENRNRRDCDPTAHAEMVAMRAAAVR 68
Query: 67 AR-----GATAYVTLEPCSHY 82
G +VTLEPC
Sbjct: 69 LHDFRLTGCDLWVTLEPCPMC 89
>gi|325958148|ref|YP_004289614.1| Cytosine deaminase [Methanobacterium sp. AL-21]
gi|325329580|gb|ADZ08642.1| Cytosine deaminase [Methanobacterium sp. AL-21]
Length = 157
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---AYGGC-PHAEVQA 59
S D +FM AL+ ++ + + ++VKDG+++GRG HAE+
Sbjct: 7 SEDDYKFMMEALKEAKKSLESGGI--PIGAILVKDGVIVGRGHNNLLQKNSTILHAEMDC 64
Query: 60 LEEA----GEEARGATAYVTLEPCSHYG 83
+E + G++ + +T Y TL PC
Sbjct: 65 IENSGRLKGKDYKRSTLYTTLSPCEMCS 92
>gi|17989385|ref|NP_542018.1| cytosine deaminase [Brucella melitensis bv. 1 str. 16M]
gi|148558663|ref|YP_001257252.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ovis ATCC 25840]
gi|297249905|ref|ZP_06933606.1| cytosine deaminase [Brucella abortus bv. 5 str. B3196]
gi|17985258|gb|AAL54282.1| cytosine deaminase [Brucella melitensis bv. 1 str. 16M]
gi|148369948|gb|ABQ62820.1| cytidine and deoxycytidylate deaminase family protein [Brucella
ovis ATCC 25840]
gi|297173774|gb|EFH33138.1| cytosine deaminase [Brucella abortus bv. 5 str. B3196]
Length = 204
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 63 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 120
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 121 LGSERLIDCDLYVTLEPCAMC 141
>gi|320095329|ref|ZP_08027018.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977741|gb|EFW09395.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 178
str. F0338]
Length = 443
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
M ++ M AL + T P V +++ G V+G+G HA
Sbjct: 1 MTLTDRYREAMGKALYLADRAR-ETGDVP-VGAVVLDTLGRVVGKGWNCREKDRDPAGHA 58
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ AL +A + G T V+LEPC+
Sbjct: 59 EIVALRDAARTLKRWNLVGCTLVVSLEPCTMC 90
>gi|206560408|ref|YP_002231172.1| putative deaminase [Burkholderia cenocepacia J2315]
gi|198036449|emb|CAR52345.1| putative deaminase [Burkholderia cenocepacia J2315]
Length = 198
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
P+S+ D FM L + + V ++V+ VI RG G HAE+
Sbjct: 31 PISARDLHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 88
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A ++ + G YVTLEPC
Sbjct: 89 AALRMAAQQLQNYRMPGCELYVTLEPCLMC 118
>gi|294494911|ref|YP_003541404.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
gi|292665910|gb|ADE35759.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
Length = 156
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 34/116 (29%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------- 46
MP S D F+ A ++ L + V +IV+D ++ G
Sbjct: 1 MPYRPSVDEYFLEIATVIAKRSTCLRN---RVGAVIVRDKQILSTGYNGAPSNMEHCLDI 57
Query: 47 --------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 58 GCIRQKNNIESGTRHEKCRAVHAEQNAIIQAALHGAGIEGATLYCTHQPCILCTKM 113
>gi|241896673|ref|ZP_04783969.1| competence protein ComEB [Weissella paramesenteroides ATCC 33313]
gi|241870154|gb|EER73905.1| competence protein ComEB [Weissella paramesenteroides ATCC 33313]
Length = 157
Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
+++ FM A+ + T T V ++VKDG +I G + G P
Sbjct: 7 AWEKYFMLQAIMLAARS---TCTRLHVGAVVVKDGRIIASGYNGSVSGTPHCTEVGDLVV 63
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A L + G A GA +VT PC H
Sbjct: 64 DGHCIRAVHAEQNALMQLAKMGISADGAQVFVTDFPCVHC 103
>gi|258645306|ref|ZP_05732775.1| zinc-binding domain protein [Dialister invisus DSM 15470]
gi|260402655|gb|EEW96202.1| zinc-binding domain protein [Dialister invisus DSM 15470]
Length = 151
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 12/148 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
+MS A++ ++ + TS + +IV VI HAE+ A+++
Sbjct: 3 HYDYMSLAMQEAKKAL--TSREIPIGAIIVLHDSVIAAAHNQCENRSDPTAHAEILAIKK 60
Query: 63 AGE-----EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
A G + YVT+EPC G + I G D R+
Sbjct: 61 ASAILGNWRLTGCSLYVTIEPCPMCAGAAVNAHLSSIIYGAPNPWYGGIDSKFRIVQNPF 120
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTR 144
V + +
Sbjct: 121 NHAVSVIRGVCQSECQQLMDEFFDDKRH 148
>gi|156841735|ref|XP_001644239.1| hypothetical protein Kpol_1051p30 [Vanderwaltozyma polyspora DSM
70294]
gi|156114877|gb|EDO16381.1| hypothetical protein Kpol_1051p30 [Vanderwaltozyma polyspora DSM
70294]
Length = 317
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 33/109 (30%), Gaps = 36/109 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM A + + V C+IV+D VI G G P
Sbjct: 167 DWDTYFMKLATLAASRSNCMKR---RVGCVIVRDRRVIATGY---NGTPRHLTNCFNGGC 220
Query: 54 -----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + A Y PC
Sbjct: 221 PRCNDGNSHTLHTCLCLHAEENALLEAGRDRIGQNAILYCDTCPCLTCS 269
>gi|331005351|ref|ZP_08328736.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
IMCC1989]
gi|330420848|gb|EGG95129.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium
IMCC1989]
Length = 158
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++VKD +IG G HAE+QAL A AT YVTLEPC
Sbjct: 27 PVGAVVVKDNEIIGSGFNQPISLCDPTAHAEIQALRNAANHIGNYRLNSATLYVTLEPCG 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|218247490|ref|YP_002372861.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
gi|257061174|ref|YP_003139062.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
gi|218167968|gb|ACK66705.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
gi|256591340|gb|ACV02227.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
Length = 154
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGR-GV---TAYGGCPHA 55
M +M AL ++ G P V +IV G ++ G T HA
Sbjct: 1 MTPYIIHRYWMEKALNQAKLA-GEIGEVP-VGAIIVDHQGNLLAETGNRKETNQDPTAHA 58
Query: 56 EVQALEEAGEE-----ARGATAYVTLEPCSHY 82
E+ A+ +A + T YVTLEPC
Sbjct: 59 EMLAIRQASQRLQTWHLNNCTLYVTLEPCPMC 90
>gi|152966037|ref|YP_001361821.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
SRS30216]
gi|151360554|gb|ABS03557.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
SRS30216]
Length = 161
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
F+ A+ + +V ++V+ G ++ G HAEVQA+ EA
Sbjct: 11 HFLERAVELATKNVAEGGG--PFGAVLVRGGELLAAGQNRVTRDNDPTAHAEVQAIREAC 68
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T Y + EPC
Sbjct: 69 RLTGTFSLHGTTLYSSCEPCPMC 91
>gi|16331502|ref|NP_442230.1| hypothetical protein sll0051 [Synechocystis sp. PCC 6803]
gi|1001158|dbj|BAA10300.1| sll0051 [Synechocystis sp. PCC 6803]
Length = 159
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
V+ D +M A+ R + T +IVKDG VIG + HAEV
Sbjct: 2 VTEQDREYMRQAIAIMRDAGVVNKTGGPFGVVIVKDGEVIGAAGNSVIQDNDPSAHAEVN 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA + GA Y + E C
Sbjct: 62 AIREACKTVGSWNLEGAVMYSSCECCPMC 90
>gi|326553676|gb|ADZ88315.1| cytidine and deoxycytidylate deaminase family protein [Brucella
melitensis M5-90]
Length = 142
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 1 MDIALEEA-HAAGERGEVP-IGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 59 LGSERLIDCDLYVTLEPCAMC 79
>gi|325289744|ref|YP_004265925.1| Guanine deaminase [Syntrophobotulus glycolicus DSM 8271]
gi|324965145|gb|ADY55924.1| Guanine deaminase [Syntrophobotulus glycolicus DSM 8271]
Length = 154
Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63
FM A R ++ + ++V++G VI HAE+ A+ +A
Sbjct: 4 FMQQAYREAKTGM-TAGEGGPFGAVVVREGKVIASAHNIVLLTQDSTAHAEIVAIRKAER 62
Query: 64 ---GEEARGATAYVTLEPCSHY 82
+ G Y T PC
Sbjct: 63 LLGTHDLSGCELYTTSYPCPMC 84
>gi|228921710|ref|ZP_04085027.1| Cytosine deaminase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228837922|gb|EEM83246.1| Cytosine deaminase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 158
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 13 AALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
AL + + T V +IV + VI RG HAE+ A+ AGE
Sbjct: 1 MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57
Query: 67 ARGA-------TAYVTLEPCSHY 82
A T Y TLEPC
Sbjct: 58 MFDAKIKNEKFTIYSTLEPCPMC 80
>gi|242765520|ref|XP_002340990.1| deoxycytidylate deaminase, putative [Talaromyces stipitatus ATCC
10500]
gi|218724186|gb|EED23603.1| deoxycytidylate deaminase, putative [Talaromyces stipitatus ATCC
10500]
Length = 388
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IV+D VI G GGCP
Sbjct: 225 TWDQYFMQLASLAAQRSNCMKR---RVGCVIVRDKRVISTGYNGTPRNITNCNEGGCPRC 281
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 282 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYCDTCPCLTC 328
>gi|222085014|ref|YP_002543543.1| cytosine deaminase protein [Agrobacterium radiobacter K84]
gi|221722462|gb|ACM25618.1| cytosine deaminase protein [Agrobacterium radiobacter K84]
Length = 152
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
FM AL +R G + ++V D VI + HAE+ A+
Sbjct: 6 HFMKLALAEARSAGARGEV----PIGAVLVLDNAVIAKAGNRTRELNDVTAHAEIAAIRI 61
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A E GA YVTLEPC+
Sbjct: 62 ACEALGQERLTGADLYVTLEPCTMC 86
>gi|89897671|ref|YP_521158.1| hypothetical protein DSY4925 [Desulfitobacterium hafniense Y51]
gi|219670820|ref|YP_002461255.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
DCB-2]
gi|89337119|dbj|BAE86714.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541080|gb|ACL22819.1| CMP/dCMP deaminase zinc-binding [Desulfitobacterium hafniense
DCB-2]
Length = 155
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
S+D FM A + T V +IVKD ++ G
Sbjct: 8 SWDEYFMQMAQVVAGRS---TCLRRQVGAVIVKDKQILSTGYNGSPTGLSHCAQKGCLRQ 64
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G P HAE AL +A G GA Y T +PC
Sbjct: 65 QLGIPSGERTEICRAVHAEQNALVQAAKHGVSINGADIYTTFQPCVLC 112
>gi|288905614|ref|YP_003430836.1| guanine deaminase [Streptococcus gallolyticus UCN34]
gi|288732340|emb|CBI13910.1| putative guanine deaminase [Streptococcus gallolyticus UCN34]
Length = 154
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+M A++ + + G +IVK+G ++ G + H EV A
Sbjct: 3 EDYMQKAIQEAYDGIKKGDGG-----PFGSVIVKNGEIVASGHNMVLAHHDPTAHGEVTA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHYGRSP---PCAQFIIECGIRRVVVCVDDPDVRV 111
+ +AGE+ G T + T EPC + + C I +
Sbjct: 58 IRKAGEKLGTHDLSGTTLFTTGEPCPMCLAACLWANIDKVYYGCTIADNAMIGFRDQRFD 117
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
G + K +V + K+F
Sbjct: 118 ELMGGRKNLPKDYLVQLNHDECLKLFKDYQEMTHN 152
>gi|213965664|ref|ZP_03393857.1| tRNA-specific adenosine deaminase [Corynebacterium amycolatum
SK46]
gi|213951615|gb|EEB63004.1| tRNA-specific adenosine deaminase [Corynebacterium amycolatum
SK46]
Length = 147
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 11 MSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA- 63
M A+ + T+ + V ++V +G V+GRG G P HAEV AL EA
Sbjct: 1 MRLAIAEAA----HTAPGDVPVGAVVVDAEGKVVGRGSNRREADGDPLAHAEVIALREAT 56
Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPC 88
G T VTLEPC +
Sbjct: 57 RAVGDGWRLEQCTLVVTLEPCVMCAGACVM 86
>gi|291569301|dbj|BAI91573.1| putative cytidine/deoxycytidylate deaminase [Arthrospira
platensis NIES-39]
Length = 157
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQA 59
+ + +M AL+ G P V LIV G +I +G HAE+ A
Sbjct: 6 TTHSHWMQQALKLGA-AAGEAGEVP-VGALIVNQQGKLIAQGENRRERDPDPTAHAEIIA 63
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A + T YVTLEPC
Sbjct: 64 LRQASQVLGDWHLNTCTLYVTLEPCPMC 91
>gi|147918769|ref|YP_687507.1| riboflavin specific deaminase [uncultured methanogenic archaeon
RC-I]
gi|110622903|emb|CAJ38181.1| predicted riboflavin specific deaminase [uncultured methanogenic
archaeon RC-I]
Length = 225
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 10/217 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGC--GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
KR ++ + ++ D + + + + + L + +S+ + +G+
Sbjct: 1 MKRPYVEVISEMTVDGKLTLKRGLSSKIIMGLMDEHSHYFLHKKRSEFDAIMVGSNTIKI 60
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK- 263
SP+R+I + L + ++ +I V+E D A R
Sbjct: 61 DNSILTNRLATGASPIRVIPCSDGSIPLTANVL-NKDAPTLICVSEKADACRVEAIRNTG 119
Query: 264 -NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ I D D+ L+ L RG+ L+VEGG + I+ +++D I L + +IG
Sbjct: 120 AEVVICGRDRIDIDLLMDTLYNRGIRRLMVEGGPTLIWQLISRKMIDHITLIQIPYIIGG 179
Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354
PS + ++ V+ + G+ + EY
Sbjct: 180 DSTPSLVGGPGVDSIDKVVQVNLTDFYKVGNHLITEY 216
>gi|24372975|ref|NP_717017.1| cytosine deaminase [Shewanella oneidensis MR-1]
gi|24347125|gb|AAN54462.1|AE015583_7 cytosine deaminase [Shewanella oneidensis MR-1]
Length = 145
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG +I RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGKIIARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + AT Y TL PC
Sbjct: 58 NAGRLTAADYQKATLYSTLSPCDMCS 83
>gi|33860665|ref|NP_892226.1| RibD/RibG domain-containing protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633607|emb|CAE18564.1| RibD/ribG C-terminal domain [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 220
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 17/222 (7%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
I + IA S D I G + + + + DA + G+GT+ A
Sbjct: 1 MNTPSIAIIIASSLDGRIAFPSGGESHLGSKEDRRMLDENLSIVDATIFGLGTLKAHQST 60
Query: 207 LTCRLNGLQ------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
+ + ++ P+ I+ K D + +I A
Sbjct: 61 YLVKNHCKNGEIKISKNQPISIVASNSKKFKKDWNYFNQPIKRWLIS------SNKKDAI 114
Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
K+ + K L + G+ L + GGA + +SFI L+D I + + +I
Sbjct: 115 ETKDFDKEIFYKNSWSKTLLSIKKAGINRLALLGGANLINSFIKEDLIDEIKITIAPRII 174
Query: 321 GEGGIPSPLEEGYLEKNFM----CVRRDYFG-SDVCLEYIGK 357
G P E+ N +++ + Y K
Sbjct: 175 GGKFTWIPTEQTNKIFNLKQFWNIKSIQELDRNEIYIHYTRK 216
>gi|329943103|ref|ZP_08291877.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Chlamydophila psittaci Cal10]
gi|332287685|ref|YP_004422586.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
psittaci 6BC]
gi|325506881|gb|ADZ18519.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila
psittaci 6BC]
gi|328814650|gb|EGF84640.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Chlamydophila psittaci Cal10]
Length = 148
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
M+ AL+ +R V C+IVKD +I RG HAE+ + A +
Sbjct: 1 MNQALKEARQAYDE--DEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGAAAQY 58
Query: 66 ----EARGATAYVTLEPCSHY 82
Y TLEPC
Sbjct: 59 LENWRLVDTVLYCTLEPCLMC 79
>gi|319939068|ref|ZP_08013432.1| ComE operon protein 2 family protein [Streptococcus anginosus
1_2_62CV]
gi|319812118|gb|EFW08384.1| ComE operon protein 2 family protein [Streptococcus anginosus
1_2_62CV]
Length = 155
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + T SV +IVKD VI G
Sbjct: 7 AWDEYFAAQALLIANRS---TCKRASVGAVIVKDNKVISTGYNGSVSGTEHCIDHECLIV 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G T YVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGIPKGFTVYVTHFPCLNC 102
>gi|302919326|ref|XP_003052839.1| hypothetical protein NECHADRAFT_67750 [Nectria haematococca mpVI
77-13-4]
gi|256733779|gb|EEU47126.1| hypothetical protein NECHADRAFT_67750 [Nectria haematococca mpVI
77-13-4]
Length = 482
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ +F+ AL +R + T+ P V C++V DG VI RG+ A G HAE+ AL
Sbjct: 173 AMHMKFIEEALDMARLAL-RTNETP-VGCVLVHDGKVIARGMNATNVTRNGTRHAEIMAL 230
>gi|184199963|ref|YP_001854170.1| putative deaminase [Kocuria rhizophila DC2201]
gi|183580193|dbj|BAG28664.1| putative tRNA-specific adenosine deaminase [Kocuria rhizophila
DC2201]
Length = 158
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEE 62
+M AL + + S + + +++ DG VIG G HAEV AL E
Sbjct: 13 EGWMDLALSEA--ALTAASGDVPIGAVVLDTDGRVIGTGRNRREECGDPTAHAEVLALRE 70
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A G T VTLEPC+
Sbjct: 71 AAAHRGEWRLEGCTLVVTLEPCAMC 95
>gi|190571610|ref|YP_001975968.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357882|emb|CAQ55341.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 141
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-- 63
++M+ A+ ++ G + +IV +I + HAE+ + +A
Sbjct: 5 QYMALAIEQAKLAQKDGEV----PIGAVIVNGNNIISSAHNISNDPTAHAEMLTIRQAFS 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
A YVTLEPC P CAQ I I+R+ +P G +
Sbjct: 61 TSTLYEAEMYVTLEPC------PMCAQAISFAKIKRLYFGAYNPKGGGVENGTRIFQFCN 114
Query: 124 I 124
Sbjct: 115 H 115
>gi|220918454|ref|YP_002493758.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956308|gb|ACL66692.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 246
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 4/141 (2%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLT 280
I LDP +L +S I V+ D + L R + D D+ L
Sbjct: 97 IALDPSGRLRWESGAIDAEHAVTVLTERVPDRYLRFLRDRGVSYLFGGRDRIDVPAVLGK 156
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ G+ LL+EGG + SF+ + ++D + L + + G G P+ + G
Sbjct: 157 LRARLGIRRLLLEGGGKINGSFLAAGVIDELSLLVAPVADGSVGTPALFDAGESGPRLRL 216
Query: 341 V---RRDYFGSDVCLEYIGKN 358
G + + Y N
Sbjct: 217 RLLSAERRPGDLLWVRYRVVN 237
>gi|124486136|ref|YP_001030752.1| hypothetical protein Mlab_1318 [Methanocorpusculum labreanum Z]
gi|124363677|gb|ABN07485.1| CMP/dCMP deaminase, zinc-binding protein [Methanocorpusculum
labreanum Z]
Length = 151
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAE 56
M S D +M AA + + ++V++G ++GRG G P H E
Sbjct: 1 MTES-MDQ-YMRAAYEEALAGRNEGGI--PIGAVLVRNGEIVGRGHNQRVQKGNPILHGE 56
Query: 57 VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
+ AL +G + T Y TL PC + + V + +R
Sbjct: 57 MDALSNSGRHPASFYKECTLYTTLAPCIMCSGAILLYKIPEVVVGEDVNYPGETAFLR-- 114
Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
RG++ + RMM++ + +
Sbjct: 115 SRGVKVTILNNEEIIRMMKTFIEENPTVWN 144
>gi|51891218|ref|YP_073909.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
gi|51854907|dbj|BAD39065.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863]
Length = 144
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 25/107 (23%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+D FM A ++ V ++V+D ++ G + G P
Sbjct: 1 MARPSWDEYFMELAQVVAKRSTCNRRK---VGTVLVRDKRILTTGYNGSPSGLPHCTDVG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GAT YVT PC H +
Sbjct: 58 CLVVDGHCVRAIHAEQNAIIQAALHGITLKGATCYVTSSPCVHCAKM 104
>gi|21673423|ref|NP_661488.1| cytosine deaminase [Chlorobium tepidum TLS]
gi|21646524|gb|AAM71830.1| cytosine deaminase [Chlorobium tepidum TLS]
Length = 148
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQAL 60
+ D FM+ AL +R V ++V++G V+ G G P H E+ +
Sbjct: 2 NRDHEFMALALEQARKSYDEGGV--PVGAVMVENGKVLAAGHNQRVQQGDPIAHGEMDCI 59
Query: 61 EEAGEEAR--GATAYVTLEPCSHY 82
+AG AR T Y TL PC
Sbjct: 60 RKAGRCARYDTVTLYTTLSPCMMC 83
>gi|119486171|ref|ZP_01620231.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
sp. PCC 8106]
gi|119456662|gb|EAW37791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya
sp. PCC 8106]
Length = 144
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 20/97 (20%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+++ D +M AL ++ + ++VK+ ++ +G HAE+
Sbjct: 1 MTAED--YMKIALEEAKKG------DMPYGAVLVKEDQIVVQGHNTAQRDNDVTAHAEIN 52
Query: 59 ALEE--------AGEEARGATAYVTLEPCSHYGRSPP 87
L + + + +G T Y T EPC +
Sbjct: 53 VLRQFTLENKSYSIDALKGYTLYTTCEPCPMCAAACV 89
>gi|86740605|ref|YP_481005.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
gi|86567467|gb|ABD11276.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3]
Length = 150
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-GGCPHAEVQALEEA 63
D R+M+ A+ + T SV +IV ++G I G + HAE AL +
Sbjct: 5 DDHRWMTRAIELAHRCPPATGA-YSVGAVIVGENGEEIAFGFSREVDDTVHAEESALAKV 63
Query: 64 G---EEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQW 118
AT Y TLEPC C Q I+E I RVV+ +P + V +G +
Sbjct: 64 APDDPRLATATIYSTLEPCSQRMSWPRTCTQLILEAKIPRVVIAWREPSLFVADCQGYEL 123
Query: 119 LSQKGIIVDRMMESEGKIFLHAYL 142
L G+ V M E +
Sbjct: 124 LGAAGVTVVGMPELGERARAMKAH 147
>gi|32455577|ref|NP_862060.1| putative deaminase [Streptomyces lividans]
gi|28883228|gb|AAO61161.1| putative deaminase [Streptomyces lividans]
gi|89357155|gb|ABD72321.1| pQC542.17 [Streptomyces lividans]
Length = 155
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-CPHAEVQALEE 62
D R++ A+ + SV +IV DG + G + G HAE AL +
Sbjct: 7 DQDLRWIQRAIDLAALCPPAAGA-YSVGAVIVSEDGTELATGYSRATGPHEHAEEVALAQ 65
Query: 63 AGE---EARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-GLQ 117
+ GAT Y TLEPC PCAQ ++ GI RVV+ +P + V G +
Sbjct: 66 LPQDDPRLAGATIYSTLEPCSQRRSPRTPCAQRVLAAGIPRVVIAWREPSLFVDDCVGYE 125
Query: 118 WLSQKGIIV 126
L Q G+ V
Sbjct: 126 QLIQAGVTV 134
>gi|222110787|ref|YP_002553051.1| cmp/dcmp deaminase zinc-binding [Acidovorax ebreus TPSY]
gi|221730231|gb|ACM33051.1| CMP/dCMP deaminase zinc-binding [Acidovorax ebreus TPSY]
Length = 361
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S DA +M A+ + G V ++V+DG VI G A H
Sbjct: 1 MSESD-DAHWMREAIAQAHAAQQAGEV----PVGAVLVRDGQVIATGRNAPIAGHDPTAH 55
Query: 55 AEVQALEE-----AGEEARGATAYVTLEPCSHYG 83
AE+ AL + G T YVTLEPC+
Sbjct: 56 AEMAALRAGAAQLSNYRLDGCTLYVTLEPCAMCS 89
>gi|121594624|ref|YP_986520.1| CMP/dCMP deaminase [Acidovorax sp. JS42]
gi|120606704|gb|ABM42444.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax sp. JS42]
Length = 361
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S DA +M A+ +R G V ++V+DG VI G A H
Sbjct: 1 MSESD-DAHWMREAIAQARAAQQAGEV----PVGAVLVRDGQVIATGRNAPIAGHDPTAH 55
Query: 55 AEVQALEE-----AGEEARGATAYVTLEPCSHYG 83
AE+ AL + G T YVTLEPC+
Sbjct: 56 AEMAALRAGAAQLSNYRLDGCTLYVTLEPCAMCS 89
>gi|293401503|ref|ZP_06645646.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305141|gb|EFE46387.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 161
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 26/105 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA-YGGCP----- 53
M V S+D FM A + + V +IV V+ G GC
Sbjct: 4 MDVLSWDEYFMGLAHLSAMRSK---DPSTQVGAVIVSGEHRVVSIGYNGFPNGCSDDEFP 60
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + RG + YV+L PC+
Sbjct: 61 WDREGDFGATKYPYVVHAELNAILNSKNDLRGCSIYVSLFPCNEC 105
>gi|255711598|ref|XP_002552082.1| KLTH0B06776p [Lachancea thermotolerans]
gi|238933460|emb|CAR21644.1| KLTH0B06776p [Lachancea thermotolerans]
Length = 335
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 29/105 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
+D FM A + + V C+IV+D VI G GGCP
Sbjct: 186 DWDTYFMKLATLAASRSNCMKR---RVGCVIVRDCRVIATGYNGTPRHLVNCHSGGCPRC 242
Query: 54 -------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG + G A Y PC
Sbjct: 243 NNGDAQLHACLCLHAEENALLEAGRDRVGPNAILYCDTCPCLTCS 287
>gi|126465369|ref|YP_001040478.1| deaminase-reductase domain-containing protein [Staphylothermus
marinus F1]
gi|126014192|gb|ABN69570.1| bifunctional deaminase-reductase domain protein [Staphylothermus
marinus F1]
Length = 227
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 11/187 (5%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
++ ++H R+ DA++VG TV+ DDP LT RL G + P RI++D
Sbjct: 24 GKKYKLSSDRDLYRLHYFRSIVDAVMVGANTVIIDDPLLTIRLPGYKGKQPYRIVIDGKL 83
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFR---------KKNINIIYCDCRDLKKLL 279
+++ K+ T ++I + ++ + K +
Sbjct: 84 RVTPKYKVFNTKYAPTILITSISNKDREIIKRFTSKGVKVLFIDTDKNDPSKLDLRKAVE 143
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ + +L+EGG + S + ++L+D + L S ++IG + L E +LE
Sbjct: 144 KLYREFYIRKILIEGGGQLLASLLKNKLIDELYLSISPLIIGLN--KTSLIEDFLESPLK 201
Query: 340 CVRRDYF 346
V ++ F
Sbjct: 202 LVLKNIF 208
>gi|319936699|ref|ZP_08011112.1| tRNA-adenosine deaminase [Coprobacillus sp. 29_1]
gi|319808256|gb|EFW04821.1| tRNA-adenosine deaminase [Coprobacillus sp. 29_1]
Length = 148
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M A + + + + +IVKD VI HAE+ A+++
Sbjct: 3 DIEYMKLAYQEAIKAKDIDEV--PIGAIIVKDDCVIASAYNQKESKRDVTAHAEMLAIQK 60
Query: 63 AGE-----EARGATAYVTLEPCSHYG 83
A + G T Y TLEPC
Sbjct: 61 ACKILGTWHLDGCTLYSTLEPCMMCS 86
>gi|325294911|ref|YP_004281425.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065359|gb|ADY73366.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 151
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
MP S+D FMS A S + V ++VKD +I G
Sbjct: 1 MPRPSWDEYFMSIAEMVSTRSTCIRRK---VGAVLVKDKRIIATGYNGPPSGLKHPEEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +G+ Y T PCS +
Sbjct: 58 CLREKLNIPSGERHELCRGLHAEQNAIIQAALHGVFTKGSILYCTHCPCSLCTKM 112
>gi|209885117|ref|YP_002288974.1| CMP/dCMP deaminase, zinc-binding [Oligotropha carboxidovorans OM5]
gi|209873313|gb|ACI93109.1| CMP/dCMP deaminase, zinc-binding [Oligotropha carboxidovorans OM5]
Length = 227
Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 10/160 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
++ D + M+ A++ R + T ++V+DG V+ + HAEV
Sbjct: 69 KITEQDRKHMALAIQTMRQAGIVDKTGGPFGAVVVRDGEVLAASGNSVLRDNDPSAHAEV 128
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
A+ A ++ RGAT + + E C + I + D +
Sbjct: 129 NAIRIACKKIGAPNLRGATLFTSCECCPMC-YATAYWARIDKIYYAAAWTDYADLFDDSN 187
Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
+ + + R++ R+
Sbjct: 188 ISIDMKKPYAQRTLHPQQMMQAEAQKVWLEFRKMPDRAKY 227
>gi|15888031|ref|NP_353712.1| cytidine and deoxycytidylate deaminase [Agrobacterium tumefaciens
str. C58]
gi|15155649|gb|AAK86497.1| cytidine and deoxycytidylate deaminase [Agrobacterium tumefaciens
str. C58]
Length = 152
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM AL +R G P + ++V DG VI R HAE+ + A
Sbjct: 6 HFMELALVEARSA-GERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMAC 63
Query: 65 -----EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 64 EALGQERLPGADLYVTLEPCTMC 86
>gi|78101280|pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
gi|78101281|pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM AL +R G P + ++V DG VI R HAE+ + A
Sbjct: 6 HFMELALVEARSA-GERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMAC 63
Query: 65 -----EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 64 EALGQERLPGADLYVTLEPCTMC 86
>gi|228953373|ref|ZP_04115419.1| Cytosine deaminase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229080221|ref|ZP_04212748.1| Cytosine deaminase [Bacillus cereus Rock4-2]
gi|229191139|ref|ZP_04318128.1| Cytosine deaminase [Bacillus cereus ATCC 10876]
gi|228592289|gb|EEK50119.1| Cytosine deaminase [Bacillus cereus ATCC 10876]
gi|228703116|gb|EEL55575.1| Cytosine deaminase [Bacillus cereus Rock4-2]
gi|228806270|gb|EEM52843.1| Cytosine deaminase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 158
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 13 AALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
AL + + T V +IV + VI RG HAE+ A+ AGE
Sbjct: 1 MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57
Query: 67 ARGA-------TAYVTLEPCSHY 82
A T Y TLEPC
Sbjct: 58 MFDAKIKNEKFTIYSTLEPCPMC 80
>gi|170702297|ref|ZP_02893195.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria IOP40-10]
gi|170132806|gb|EDT01236.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria IOP40-10]
Length = 193
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
PVS+ D FM L + + V ++V VI RG G HAE+
Sbjct: 26 PVSARDLHFMR--LAQAAAEEARAAGEVPVGAVLVCGDEVIARGFNHPIGGHDPSAHAEM 83
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 84 AALRMAAQHLQNYRMPGCELYVTLEPCLMC 113
>gi|20089035|ref|NP_615110.1| dCMP deaminase [Methanosarcina acetivorans C2A]
gi|19913892|gb|AAM03590.1| dCMP deaminase [Methanosarcina acetivorans C2A]
Length = 150
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
S D F+ A +R L S +V +I++D ++ G
Sbjct: 6 SLDEYFLEIAFAVARRATCLRS---NVGAVIMRDKRILSTGYNGAPSGLEHCLEIECIRD 62
Query: 48 ----------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC+ +
Sbjct: 63 LEKIISGTQKEKCRAVHAEQNAIIQAAIHGVSIAGATIYCTQQPCTLCAKM 113
>gi|284046137|ref|YP_003396477.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283950358|gb|ADB53102.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 250
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 1/121 (0%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLT 280
+++ +L L+ + + ++ +P A + L L
Sbjct: 112 VVIARSGRLPLEIPLFQDPDAHAIVYTEVATEPPAVPARVELQRIDPAAGEPTLTAALRH 171
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ GV SLL EGG + ++ LVD + L + + G GG P+ L
Sbjct: 172 LRREHGVRSLLCEGGPQLLSGLLHEGLVDELFLTVAPQLAGGGGEPTLTGGTALPSPAEL 231
Query: 341 V 341
Sbjct: 232 T 232
>gi|254442522|ref|ZP_05055998.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198256830|gb|EDY81138.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 177
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M A + + +I G V+G HAE+ A+ +
Sbjct: 25 DRYYMELAYNQAIEAWRENEV--PIGAVIEYKGEVVGSAHNRVESTNDPTAHAEMLAITQ 82
Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQ 90
A + AT YVT EPC + ++
Sbjct: 83 ASSAIKNWRLNEATLYVTKEPCPMCSGASMMSR 115
>gi|323342858|ref|ZP_08083090.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463970|gb|EFY09164.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 159
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 26/102 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
S+D FM A + + V IV ++G G
Sbjct: 9 SWDEYFMGLAHLSALRSK---DPSTQVGAAIVDQQKKIVGIGYNGLPTGLSDDAFPWERE 65
Query: 47 -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
T Y HAE+ A+ A + +G T YV+L PC+
Sbjct: 66 GDFQTTKYAYVVHAELNAILNATQSLQGCTIYVSLFPCNECS 107
>gi|296139607|ref|YP_003646850.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296027741|gb|ADG78511.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 207
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
++L L RG+ +L EGG V + + + LVD + L + V+G G
Sbjct: 126 HEVLADLHRRGLHRVLAEGGPGVLGALLAADLVDELCLTIAPRVVGGHGGRIVAGPDLPA 185
Query: 336 KNFMCVRRDYFGSD---VCLEYIG 356
+ G D + ++
Sbjct: 186 DRWRPAHT--LGDDEGYLYTRWLR 207
>gi|217071302|gb|ACJ84011.1| unknown [Medicago truncatula]
Length = 181
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+ D +F+ A+ + V +IV + VI HAEV
Sbjct: 22 IKDRDHKFLRKAVEEAYKGV-ECEDGGPFGAVIVLNDEVIASCHNMVLRNTDPSAHAEVT 80
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ EA ++ + Y + EPC
Sbjct: 81 AIREACKKLKQIELSECEIYASCEPCPMC 109
>gi|299134252|ref|ZP_07027445.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
gi|298590999|gb|EFI51201.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2]
Length = 154
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
F+ A+ +R +V ++VKDG VI GV HAE+QA+ A
Sbjct: 7 FLCEAIELARENVRKGGR--PFGAVLVKDGKVIATGVNEILETGDPTTHAELQAIRVASH 64
Query: 66 -----EARGATAYVTLEPCSHY 82
G T Y + PC
Sbjct: 65 VLGSPRLDGCTIYASGHPCPMC 86
>gi|298491580|ref|YP_003721757.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
gi|298233498|gb|ADI64634.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
Length = 165
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
++M+ AL ++ G P V +IV +I G HAE+ A+
Sbjct: 17 HQKWMNHALELAQVA-GDAGEVP-VGAVIVDAADNLIATGENRKERDQDPTGHAEIMAIR 74
Query: 62 EAGEEARGA-----TAYVTLEPCSHY 82
A + + T YVTLEPC
Sbjct: 75 AASQSLQNWRLDKYTLYVTLEPCPMC 100
>gi|315222930|ref|ZP_07864809.1| putative ComE operon protein 2 [Streptococcus anginosus F0211]
gi|315187880|gb|EFU21616.1| putative ComE operon protein 2 [Streptococcus anginosus F0211]
Length = 164
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + T SV +IVKD VI G
Sbjct: 16 AWDEYFAAQALLIANRS---TCKRASVGAVIVKDNKVISTGYNGSVSGTEHCIDHECLIV 72
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G T YVT PC +
Sbjct: 73 DGHCVRTLHAEVNAILQGAERGIPKGFTVYVTHFPCLNC 111
>gi|312113039|ref|YP_004010635.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311218168|gb|ADP69536.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 157
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA 63
M AL + +G T V ++V DG + GRG HAE++A+ +A
Sbjct: 1 MQEALIEAERAAALGET----PVGAVVVAPDGSIAGRGHNLVISVRDPFGHAEMRAIRQA 56
Query: 64 G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
E G YVTLEPC CA I IRR+ D G+++
Sbjct: 57 CEAVQSERLPGYDLYVTLEPC------TMCAAAISFARIRRLYFGAWDEKGGAVENGVRF 110
Query: 119 LSQKGII 125
S
Sbjct: 111 FSAATCH 117
>gi|229551942|ref|ZP_04440667.1| guanine deaminase [Lactobacillus rhamnosus LMS2-1]
gi|229314677|gb|EEN80650.1| guanine deaminase [Lactobacillus rhamnosus LMS2-1]
Length = 167
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
FM+ A ++ +V + P C+IVK+G V+ R + H E+ A+ +AG
Sbjct: 18 FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVVSRAHNRVLVDHDPTAHGEITAIRKAGQ 76
Query: 65 ----EEARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 77 ALGTHDLSGCELYTSAMPCPMC 98
>gi|257790791|ref|YP_003181397.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
gi|317488497|ref|ZP_07947048.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. 1_3_56FAA]
gi|325831992|ref|ZP_08165089.1| ComE operon protein 2 [Eggerthella sp. HGA1]
gi|257474688|gb|ACV55008.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
gi|316912429|gb|EFV33987.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. 1_3_56FAA]
gi|325486313|gb|EGC88765.1| ComE operon protein 2 [Eggerthella sp. HGA1]
Length = 152
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM+ A + T +V +IVKD ++ G
Sbjct: 9 SWDEYFMTLANEVATR---TTCMRRAVGAVIVKDRRILATGYNGVPTGMRHCAETGCLRQ 65
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GA+ YV +PC +
Sbjct: 66 QLGVPSGQRHEICRGLHAEQNAIIQAARYGINITGASIYVNTQPCIVCAKM 116
>gi|91206241|ref|YP_538596.1| cytosine deaminase [Rickettsia bellii RML369-C]
gi|157827858|ref|YP_001496922.1| cytosine deaminase [Rickettsia bellii OSU 85-389]
gi|91069785|gb|ABE05507.1| Cytosine deaminase [Rickettsia bellii RML369-C]
gi|157803162|gb|ABV79885.1| Cytosine deaminase [Rickettsia bellii OSU 85-389]
Length = 152
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+FD FM AL+ + S N V +IV + +I + HAE+
Sbjct: 2 NFDNFFMREALKQAEIAF---SKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEI 58
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 59 IAINEACRIISSKNLSDYDIYVTLEPCAMC 88
>gi|54025702|ref|YP_119944.1| hypothetical protein nfa37320 [Nocardia farcinica IFM 10152]
gi|54017210|dbj|BAD58580.1| putative deaminase/reductase [Nocardia farcinica IFM 10152]
Length = 259
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K LL L RG+ +L EGG + I + LVD + L + +++G L
Sbjct: 176 PKALLAALAERGLHRVLCEGGPHLFGQLIEADLVDELCLTTAPVLVGGTAGRISLSAREF 235
Query: 335 EKNFMCVRRDYFGSD--VCLEYIGK 357
++ R D V + +
Sbjct: 236 HQHMHR-RHMILDDDGTVLTRWARR 259
>gi|169623393|ref|XP_001805104.1| hypothetical protein SNOG_14935 [Phaeosphaeria nodorum SN15]
gi|111056667|gb|EAT77787.1| hypothetical protein SNOG_14935 [Phaeosphaeria nodorum SN15]
Length = 370
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D FM A + + V C+IV++ V+ G GGCP
Sbjct: 189 SWDQYFMQLADLAAHRSNCMKR---RVGCVIVREKRVVSTGYNGTPRGMTNCNEGGCPRC 245
Query: 54 ----------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG + G AT Y PC
Sbjct: 246 NNAAKGGTGLNTCLCLHAEENALLEAGRDRIGGSATLYCNTCPCLTCS 293
>gi|50288375|ref|XP_446616.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525924|emb|CAG59543.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
+D FM A + + V C+IV++ VI G +GGCP
Sbjct: 157 DWDTYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFHGGCPRC 213
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 214 NDGDSKNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 259
>gi|254564943|ref|XP_002489582.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Pichia pastoris GS115]
gi|238029378|emb|CAY67301.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Pichia pastoris GS115]
gi|328350006|emb|CCA36406.1| DRAP deaminase [Pichia pastoris CBS 7435]
Length = 547
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCPHAEVQALEEA 63
M A+ ++ T T +V C+I +G +I RG + G HAE AL +
Sbjct: 405 HHREMMKLAIEEAKKCD-HTETAFNVGCIITDENGEIISRGYSREFEGNTHAEQCALMKL 463
Query: 64 GEEA-RGATAYVTLEPC 79
+ G+ Y T+EPC
Sbjct: 464 DYKLPPGSILYTTMEPC 480
>gi|332974309|gb|EGK11241.1| guanine deaminase [Desmospora sp. 8437]
Length = 146
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 18/88 (20%)
Query: 8 ARFMSAALRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
R+M A+ + H G +IV++G VI GV HAE+QA
Sbjct: 4 KRWMQQAMDLAAENVSRHRGE-----PFGAVIVREGEVIATGVNETGKIQDPTAHAEIQA 58
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ EA + + + EPCS
Sbjct: 59 IREACRKLGKTVLDDCEMFASGEPCSMC 86
>gi|313673213|ref|YP_004051324.1| cmp/dcmp deaminase zinc-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939969|gb|ADR19161.1| CMP/dCMP deaminase zinc-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 154
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM ++ ++ + + + ++V DG +I G HAE+
Sbjct: 1 MDDIDLLFMKKTIQVAKRAL--KYDDVPIGAIVVMDGKIIASGYNRKKTTKNPLDHAEII 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+++A Y TLEPC
Sbjct: 59 AMKKAARKIGDWRLNNCVLYSTLEPCIMC 87
>gi|254467918|ref|ZP_05081324.1| tRNA-specific adenosine deaminase [beta proteobacterium KB13]
gi|207086728|gb|EDZ64011.1| tRNA-specific adenosine deaminase [beta proteobacterium KB13]
Length = 160
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
+ +FM AAL + L + ++ + +IGRG + HAE+
Sbjct: 10 KFMTDHTQFMQAALDEAEKARSLDEI--PIGAIVTLNNEIIGRGFNSVIKNSDPTCHAEI 67
Query: 58 QALEEAGEEARGA-----TAYVTLEPCSHY 82
AL +A YVTLEPC
Sbjct: 68 MALRDAAHHLSNYRLPEVNLYVTLEPCIMC 97
>gi|83814096|ref|YP_445447.1| cytidine deaminase [Salinibacter ruber DSM 13855]
gi|83755490|gb|ABC43603.1| probable cytidine deaminase [Salinibacter ruber DSM 13855]
Length = 237
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
F+ A+ + +V T A L+V+DG ++GRG T HAEV A+ A +
Sbjct: 87 FLREAIEMAVQNV-TTGQGGPFAALVVRDGEIVGRGTNVVTTLNDPTAHAEVTAIRRACD 145
Query: 66 EAR-----GATAYVTLEPCSHY 82
G T Y T EPC
Sbjct: 146 ALDDFELAGCTLYATCEPCPMC 167
>gi|53804410|ref|YP_113955.1| zinc-binding domain-containing protein [Methylococcus capsulatus
str. Bath]
gi|53758171|gb|AAU92462.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath]
Length = 164
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M A++ R + T +IV+ G V+ + HAE+ A+
Sbjct: 9 EQDRAYMRLAIQTMRRAGIVDRTGGPFGAVIVRGGQVLAVAGNSVIRDNDPTAHAEINAI 68
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EA GA Y + E C
Sbjct: 69 REACRRIGSYDLSGAVLYSSCECCPMC 95
>gi|332796444|ref|YP_004457944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Acidianus hospitalis W1]
gi|332694179|gb|AEE93646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Acidianus hospitalis W1]
Length = 216
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
++ K + H+LR++ DAI++G TV D+P LT + +P+R+I+
Sbjct: 20 YYSELSCKYDKVRQHILRSEVDAIMIGGNTVRIDNPSLTLKYV--HGKNPIRVIISNSLN 77
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVT 288
++ KI T + +++ ++K + I D ++ ++ + V
Sbjct: 78 FDINYKIFNTPPQTIIYTSNNSENKDFENKIKEKGVIIRKLDNFNICNVMNDLESNFNVH 137
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRD 344
+++EGG + S I D + + S V G G + L + + + V+
Sbjct: 138 KVMIEGGGKLIWSVIKENCFDELRVTISPRVFGNGVSLANGEGFLGKNSPKLDLEDVKIC 197
Query: 345 YFGSDVCLEYIGKN 358
+V L Y +N
Sbjct: 198 ECKEEVHLIYKNRN 211
>gi|150024385|ref|YP_001295211.1| cytosine/adenosine deaminase [Flavobacterium psychrophilum
JIP02/86]
gi|149770926|emb|CAL42391.1| Probable cytosine/adenosine deaminase [Flavobacterium
psychrophilum JIP02/86]
Length = 146
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M D FM AL+ + V ++V + +I + HAE
Sbjct: 1 MENIFTDEYFMRKALQEAYVAFDK--EEIPVGAIVVINNRIIAKSHNLTELLNDVTAHAE 58
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QA+ + G+ YVTLEPC
Sbjct: 59 MQAITASANFLGGKYLTNCILYVTLEPCQMC 89
>gi|83815284|ref|YP_445633.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
ruber DSM 13855]
gi|83756678|gb|ABC44791.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter
ruber DSM 13855]
Length = 455
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 14/291 (4%)
Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
+E + +G + R + R+ + + S
Sbjct: 157 KIESLAEHGVEITERISLEPHVNRHNAEYLRTKVNRMRHILDLGPANGHAQGNAHGTSLR 216
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ + R +TL A S D I +PI+ + H LRA D IL
Sbjct: 217 DLKQRIDRYFAEKGRPFVTLTYAQSLDGSIASTSGTPLPISSEQALRFTHQLRALHDGIL 276
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VGIGTVLADDP LT R N P+ I+LD + D++++ P+I+ + N DP
Sbjct: 277 VGIGTVLADDPRLTVRHND--GTHPVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADP 334
Query: 255 VLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+K LL L R +S++VEGG ++ SF+ +
Sbjct: 335 DRKERLEAHGGTVIELSCGPEGGICVKTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQ 394
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353
+I+ + + +G S L + +++ ++G D+ LE
Sbjct: 395 RVIVTVAPMFVGGTAALSSLAPEDQDTHARSDFPRLDNIQQRWYGEDLVLE 445
>gi|148543876|ref|YP_001271246.1| ComE operon protein 2 [Lactobacillus reuteri DSM 20016]
gi|184153276|ref|YP_001841617.1| dCMP deaminase [Lactobacillus reuteri JCM 1112]
gi|194468431|ref|ZP_03074417.1| ComE operon protein 2 [Lactobacillus reuteri 100-23]
gi|227364782|ref|ZP_03848831.1| competence protein ComEB [Lactobacillus reuteri MM2-3]
gi|227545004|ref|ZP_03975053.1| competence protein ComEB [Lactobacillus reuteri CF48-3A]
gi|300909961|ref|ZP_07127421.1| ComE operon protein comEB [Lactobacillus reuteri SD2112]
gi|325682591|ref|ZP_08162108.1| competence protein comEB [Lactobacillus reuteri MM4-1A]
gi|148530910|gb|ABQ82909.1| ComE operon protein 2 [Lactobacillus reuteri DSM 20016]
gi|183224620|dbj|BAG25137.1| dCMP deaminase [Lactobacillus reuteri JCM 1112]
gi|194453284|gb|EDX42182.1| ComE operon protein 2 [Lactobacillus reuteri 100-23]
gi|227070241|gb|EEI08615.1| competence protein ComEB [Lactobacillus reuteri MM2-3]
gi|227185021|gb|EEI65092.1| competence protein ComEB [Lactobacillus reuteri CF48-3A]
gi|300892609|gb|EFK85969.1| ComE operon protein comEB [Lactobacillus reuteri SD2112]
gi|324978430|gb|EGC15380.1| competence protein comEB [Lactobacillus reuteri MM4-1A]
Length = 161
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------- 53
P +D FM A + T SV ++V+D +I G + G
Sbjct: 3 PRIDWDQYFMIQAALLASRS---TCNRLSVGAVLVRDKRIIAGGYNGSVAGDAHCIDEGC 59
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G A GA+ YVT PC
Sbjct: 60 YLRDGHCVRTIHAEMNALLQCAKFGISADGASIYVTDFPCLQC 102
>gi|302559850|ref|ZP_07312192.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
gi|302477468|gb|EFL40561.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000]
Length = 363
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 81/219 (36%), Gaps = 10/219 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P
Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPR 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L + P+++ + +L ++ T + E + L
Sbjct: 61 LLVNSPERRAARLAEGRTEYPLKVTVSGSGELDPAARFWHTGGEKVLYTTDEGAERARVL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ + + + L + RGV L+VEGG + I L D + L + +
Sbjct: 121 GIAADVVPLGA-ELDWRRLLEHLHAARGVRRLMVEGGGLIHTQLITQGLADELQLAVAPL 179
Query: 319 VIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIG 356
+G+ P G + G V + Y
Sbjct: 180 FVGDPEAPRLFGPGAYQGGRLRLTGTRQVGDVVLMRYEP 218
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPS------VACLIV-KDGIVIGRGVTAYGGCP--H 54
S+ D +++ L + P V ++V DG + RG + GG P H
Sbjct: 228 SAADHHWLAL-------ACELAALCPPSGTAFSVGAVVVAADGTELARGHSREGGDPVVH 280
Query: 55 AEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
AE AL +A AT Y +LEPC+ P +
Sbjct: 281 AEEAALAKADPTDPRLATATVYSSLEPCARRASRPASCVRL 321
>gi|73668393|ref|YP_304408.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
gi|72395555|gb|AAZ69828.1| dCMP deaminase [Methanosarcina barkeri str. Fusaro]
Length = 159
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
S D F+ A + L +V +IVKD ++ G
Sbjct: 6 SLDEYFLEIAFVVGKRATCLRK---NVGAVIVKDKRILSTGYNGAPSGMDHCLEIGCIRD 62
Query: 49 ----YGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G HAE A+ +A G GAT Y T +PC +
Sbjct: 63 LEKIPSGTRQEKCRAVHAEQNAIIQAAIHGVSIAGATIYCTHQPCILCAKM 113
>gi|85717177|ref|ZP_01048135.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrobacter sp. Nb-311A]
gi|85696010|gb|EAQ33910.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrobacter sp. Nb-311A]
Length = 142
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA--- 63
M AL ++ G P + C+IV+DG VI +T HAE+ AL A
Sbjct: 1 MDMALEAAKKA-GQAGEVP-IGCVIVRDGEVIATAGNRTLTDRDPTAHAEILALRAAAQA 58
Query: 64 --GEEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 59 LGSERLTGCDLYVTLEPCTMC 79
>gi|146341264|ref|YP_001206312.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
ORS278]
gi|146194070|emb|CAL78088.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp.
ORS278]
Length = 165
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56
MP D FM A++ + G + C+IV ++ HAE
Sbjct: 1 MPNLKTDEHFMQEAIKIATQ-DGADPALSPIGCVIVLGSDIVAAERNHVAAKHDATAHAE 59
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++A+ AG E RGAT Y TL+PC
Sbjct: 60 IEAIRAAGRGFDDGELRGATLYTTLQPCGMC 90
>gi|282880633|ref|ZP_06289339.1| guanine deaminase [Prevotella timonensis CRIS 5C-B1]
gi|281305528|gb|EFA97582.1| guanine deaminase [Prevotella timonensis CRIS 5C-B1]
Length = 156
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
M A+ S V +I K G +I + HAEV A+ +A ++
Sbjct: 8 MRRAIALSEESVLSGGG--PFGAVIAKGGNIIAEASNTVTIDHDPTAHAEVNAIRKATQK 65
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 66 LGTFDLTGCDIYTSCEPCPMC 86
>gi|302346851|ref|YP_003815149.1| guanine deaminase [Prevotella melaninogenica ATCC 25845]
gi|302150909|gb|ADK97170.1| guanine deaminase [Prevotella melaninogenica ATCC 25845]
Length = 155
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A+ S R G +I ++G +I G HAEV
Sbjct: 4 EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ +A ++ G Y + EPC
Sbjct: 58 IRKACQKLNTFDLSGCEIYTSCEPCPMC 85
>gi|293379949|ref|ZP_06626050.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus crispatus 214-1]
gi|290923462|gb|EFE00364.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus crispatus 214-1]
Length = 156
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ ++ G + ++V DG V+G G HAE+ A++EA
Sbjct: 1 MQLAIDQAKEAEKQGEV----PIGAVVVDPDGRVVGTGYNRRELDEDATQHAEMIAIKEA 56
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ +VTLEPC
Sbjct: 57 CSKLGMWRLIDCSLFVTLEPCPMC 80
>gi|294507332|ref|YP_003571390.1| cytidine deaminase [Salinibacter ruber M8]
gi|294343661|emb|CBH24439.1| Probable cytidine deaminase [Salinibacter ruber M8]
Length = 237
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
F+ A+ + +V T A L+V+DG ++GRG T HAEV A+ A +
Sbjct: 87 FLREAIEMAVQNV-TTGQGGPFAALVVRDGEIVGRGTNVVTTLNDPTAHAEVTAIRRACD 145
Query: 66 EAR-----GATAYVTLEPCSHY 82
G T Y T EPC
Sbjct: 146 ALDDFELAGCTLYATCEPCPMC 167
>gi|91215299|ref|ZP_01252271.1| hypothetical protein P700755_13417 [Psychroflexus torquis ATCC
700755]
gi|91186904|gb|EAS73275.1| hypothetical protein P700755_13417 [Psychroflexus torquis ATCC
700755]
Length = 149
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE---- 56
+FM A+ +++ T + +IVK+G +I G G HAE
Sbjct: 4 ELHEKFMLKAINWAKKGK-DTDGGGAFGAVIVKEGHIIAEGHNQVGSKTDCTQHAELAMV 62
Query: 57 VQALEEAG-EEARGATAYVTLEPCSHY 82
+A + + +G Y + EPC
Sbjct: 63 QEACRKLKSKSLKGCVLYTSCEPCLMC 89
>gi|13542119|ref|NP_111807.1| deoxycytidylate deaminase [Thermoplasma volcanium GSS1]
gi|14325550|dbj|BAB60453.1| dCMP deaminase [Thermoplasma volcanium GSS1]
Length = 170
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 33/116 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
S+D FM A + + V +IVKD V+ G G
Sbjct: 5 KRPSWDEYFMRMAYLAASRTNCIRRK---VGAVIVKDKNVLATGYNGPPSGTAHCDVVGC 61
Query: 54 -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE A+ +A G + +T YVT PC +
Sbjct: 62 IREDLKIPSGERHELCRGLHAEQNAIIQAAVHGVSIKDSTIYVTTHPCVVCSKMIM 117
>gi|56707349|ref|YP_169245.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110669819|ref|YP_666376.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. tularensis FSC198]
gi|56603841|emb|CAG44817.1| Zinc-binding domain protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320152|emb|CAL08200.1| Zinc-binding domain protein [Francisella tularensis subsp.
tularensis FSC198]
gi|282158481|gb|ADA77872.1| Zinc-binding domain protein [Francisella tularensis subsp.
tularensis NE061598]
Length = 153
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ L A YVTLEPC
Sbjct: 57 HAEILVLRSAALKLGNYRLVNTKLYVTLEPCIMC 90
>gi|295107524|emb|CBL05067.1| Deoxycytidylate deaminase [Gordonibacter pamelaeae 7-10-1-b]
Length = 153
Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A + T V +IVKD ++ G
Sbjct: 10 SWDEYFMKLANEVATR---TTCMRRGVGAVIVKDRRILATGYNGVPTGMRHCAETGCLRQ 66
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GA+ YV +PC +
Sbjct: 67 QLGVPSGQRHEICRGLHAEQNAIIQAARYGINITGASIYVNTQPCVVCAKM 117
>gi|167043956|gb|ABZ08643.1| putative RibD C-terminal domain protein [uncultured marine
crenarchaeote HF4000_APKG3J11]
Length = 217
Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R + A++ D + S ++ K +VH LR++ DAIL+G TV DD
Sbjct: 1 MESFRPRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDD 59
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---R 261
P L+ + +P+RIILD + + S+I+KT P II L
Sbjct: 60 PLLSVHNIK--KKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKF 117
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G
Sbjct: 118 PVQVIVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG 177
Query: 322 EGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++ ++V L Y
Sbjct: 178 GMTATTLVDGDGFSTIAKSIRLKLKSVSKIKNEVILRYEN 217
>gi|15613897|ref|NP_242200.1| late competence operon required for DNA binding and uptake
[Bacillus halodurans C-125]
gi|10173950|dbj|BAB05053.1| late competence operon required for DNA binding and uptake
[Bacillus halodurans C-125]
Length = 188
Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+D FM+ + + T T V IV+D +I G + G P
Sbjct: 1 MNRISWDQYFMAQSHLLALRS---TCTRLMVGATIVRDKRIIAGGYNGSISGGPHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G GA YVT PC +
Sbjct: 58 CYVVEGHCIRTIHAEVNALLQCAKFGVPTEGAEIYVTHFPCVNC 101
>gi|53712925|ref|YP_098917.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis YCH46]
gi|60681139|ref|YP_211283.1| putative nucleotide deaminase [Bacteroides fragilis NCTC 9343]
gi|253563096|ref|ZP_04840553.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
gi|265763023|ref|ZP_06091591.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_1_16]
gi|52215790|dbj|BAD48383.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis YCH46]
gi|60492573|emb|CAH07345.1| putative nucleotide deaminase [Bacteroides fragilis NCTC 9343]
gi|251946872|gb|EES87154.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
gi|263255631|gb|EEZ26977.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_1_16]
gi|301162628|emb|CBW22175.1| putative nucleotide deaminase [Bacteroides fragilis 638R]
Length = 155
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ SR +V +I KDG ++ GV HAEV A+ A
Sbjct: 4 EELMRKAIELSRENVANGGG--PFGAVIAKDGEIVATGVNRVTASCDPTAHAEVSAIRAA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 ASKLGTFNLSGYEIYTSCEPCPMC 85
>gi|67608724|ref|XP_666899.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis TU502]
gi|54657972|gb|EAL36670.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis]
Length = 373
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 38/113 (33%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++D FM A + + S V +IVK+ +I G G P
Sbjct: 220 SRPNWDEYFMKIA-KLASQRSNCVSR--KVGSVIVKEKKIISTGY---NGTPKNMKNCFE 273
Query: 54 -----------------------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAE AL AG ++ GAT YVTL PC
Sbjct: 274 GGCTRCANPNRVEGKSLETCSCMHAETNALLFAGIDKCIGATIYVTLMPCISC 326
>gi|118595115|ref|ZP_01552462.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Methylophilales bacterium HTCC2181]
gi|118440893|gb|EAV47520.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Methylophilales bacterium HTCC2181]
Length = 149
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
M AL ++ + V +IV D I+IGRG HAE+ A+ EA
Sbjct: 1 MQEALAMAKIA--YANHEVPVGAVIVNDNIIIGRGCNELIQKNDPTGHAEMHAIREAART 58
Query: 66 ----EARGATAYVTLEPCSHY 82
YVTLEPC
Sbjct: 59 IKNYRLTNCDIYVTLEPCPMC 79
>gi|134295996|ref|YP_001119731.1| tRNA-adenosine deaminase [Burkholderia vietnamiensis G4]
gi|134139153|gb|ABO54896.1| tRNA-adenosine deaminase [Burkholderia vietnamiensis G4]
Length = 197
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
P S+ D FM L + + V ++V+ VI RG G HAE+
Sbjct: 30 PASARDLHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 87
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 88 AALRMAAQHLQNYRMPGCELYVTLEPCLMC 117
>gi|325856346|ref|ZP_08172062.1| guanine deaminase [Prevotella denticola CRIS 18C-A]
gi|327312522|ref|YP_004327959.1| guanine deaminase [Prevotella denticola F0289]
gi|325483530|gb|EGC86502.1| guanine deaminase [Prevotella denticola CRIS 18C-A]
gi|326944415|gb|AEA20300.1| guanine deaminase [Prevotella denticola F0289]
Length = 155
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A+ S R G +I ++G +I G HAEV
Sbjct: 4 EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ +A ++ G Y + EPC
Sbjct: 58 IRKACQKLNTFDLTGCEIYTSCEPCPMC 85
>gi|189468213|ref|ZP_03016998.1| hypothetical protein BACINT_04609 [Bacteroides intestinalis DSM
17393]
gi|189436477|gb|EDV05462.1| hypothetical protein BACINT_04609 [Bacteroides intestinalis DSM
17393]
Length = 139
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA- 63
M AL +R G V ++V +I R T HAE+QA+ A
Sbjct: 1 MKQALVEARKAAERGEV----PVGAIVVCKERIIARAHNLTETLTDVTAHAEMQAITAAA 56
Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
G+ T YVT+EPC CA I + R+V +D Q L
Sbjct: 57 STLGGKYLNECTLYVTVEPCV------MCAGAIAWAQMGRLVFGAEDEKRGYQRYAPQAL 110
Query: 120 SQKGIIV 126
K ++V
Sbjct: 111 HPKTVVV 117
>gi|134094405|ref|YP_001099480.1| putative guanine deaminase [Herminiimonas arsenicoxydans]
gi|133738308|emb|CAL61353.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Herminiimonas
arsenicoxydans]
Length = 153
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
+SS + + A++ ++ + ++ D VI GV ++ HAE++
Sbjct: 1 MSSHHEKMLHQAVQLAQENRERGGR--PFGAVLAIDNEVIAVGVNNIVHSHDPTTHAEME 58
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A + +G+ Y + PC
Sbjct: 59 AIRSASQRLGRPNLKGSVIYASGHPCPMC 87
>gi|320583405|gb|EFW97618.1| DRAP deaminase, putative [Pichia angusta DL-1]
Length = 569
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66
++M+ AL + + V +I G VI G T G HAE A+E+ E+
Sbjct: 419 KKYMALALEQAEK-CPQIDSAFRVGAVITCGGEVISTGHTRELEGNTHAEQCAMEKYFEK 477
Query: 67 ------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
G Y T+EPCS G P + +
Sbjct: 478 TGSRTLPPGCEIYTTMEPCSERLSGNKPCLDRILDYKDCFTTCY 521
>gi|288803845|ref|ZP_06409271.1| guanine deaminase [Prevotella melaninogenica D18]
gi|288333679|gb|EFC72128.1| guanine deaminase [Prevotella melaninogenica D18]
Length = 155
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A+ S R G +I ++G +I G HAEV
Sbjct: 4 EELMRRAIELSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVST 57
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ +A ++ G Y + EPC
Sbjct: 58 IRKACQKLNTFDLSGCEIYTSCEPCPMC 85
>gi|224540782|ref|ZP_03681321.1| hypothetical protein BACCELL_05696 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517611|gb|EEF86716.1| hypothetical protein BACCELL_05696 [Bacteroides cellulosilyticus
DSM 14838]
Length = 155
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S +V +I KDG +I G HAEV A+ A
Sbjct: 4 EELMRKAIELSTENVANGGG--PFGAVIAKDGEIIATGTNRVTSSCDPTAHAEVSAIRAA 61
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 62 ATSLGTFNLSGCEIYTSCEPCPMC 85
>gi|163794376|ref|ZP_02188348.1| bifunctional deaminase-reductase-like protein [alpha
proteobacterium BAL199]
gi|159180544|gb|EDP65065.1| bifunctional deaminase-reductase-like protein [alpha
proteobacterium BAL199]
Length = 261
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
+ D I S + G + + +H LRA DA+++G GT + DDP LT R
Sbjct: 66 GQTLDGRIATVSGHSHYVNGSEALDHLHRLRALVDAVVIGAGTAVDDDPSLTTRRVE--G 123
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+P+R++LDP ++ D K+ + ++ + R +
Sbjct: 124 SNPVRVLLDPSGRVPADRKLFRDGQAPTLVCGPVRPGAERLDTSGDQE------TQRSPR 177
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L L RG +LVEGGA A SF+++R +D + L + ++G G L E
Sbjct: 178 DVLAALSARGFDIVLVEGGAKTASSFLDARCIDRLHLLVAPTLLGSGRPGIVLPEVMTMD 237
Query: 337 NFMCVRRDY--FGSDVCLEYIG 356
G D +
Sbjct: 238 GARRFDSRRYTLGDDTLFDLTP 259
>gi|126655546|ref|ZP_01726985.1| cytosine deaminase [Cyanothece sp. CCY0110]
gi|126623025|gb|EAZ93730.1| cytosine deaminase [Cyanothece sp. CCY0110]
Length = 145
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + T P + ++VKD +IGRG G P HAE+ L
Sbjct: 3 MDE-FIKAAIAEAKQGL-KTGGIP-IGSVLVKDNKIIGRGHNKRVQEGDPITHAEIDCLR 59
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG + Y TL PC
Sbjct: 60 NAGRIGSYQDTVLYSTLMPCYLC 82
>gi|146283335|ref|YP_001173488.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
gi|145571540|gb|ABP80646.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501]
Length = 145
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V +G ++GRG + HAE+ A+ A + G+T YVTLEPCS
Sbjct: 18 PVGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCS 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|58698581|ref|ZP_00373480.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534906|gb|EAL59006.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 148
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GE 65
++M A+ ++ + + +IV +I + HAE+ A+ +A
Sbjct: 12 QYMELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTS 69
Query: 66 EARGATAYVTLEPCSHY 82
YVTLEPC
Sbjct: 70 TLCDTDMYVTLEPCPMC 86
>gi|317496201|ref|ZP_07954561.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Gemella moribillum M424]
gi|316913776|gb|EFV35262.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Gemella moribillum M424]
Length = 153
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
+M AL +R G V ++V D V+ + HAE+
Sbjct: 2 KDHNYYMEMALEEARRAYQKGEV----PVGAVLVIDDEVVAKAHNTREASQQVLNHAEML 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
++EA E + Y T+EPC
Sbjct: 58 VIKEACEKIGFWRLDNSYLYTTVEPCVMCS 87
>gi|257487178|ref|ZP_05641219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|331009206|gb|EGH89262.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 169
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|313112820|ref|ZP_07798467.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310624890|gb|EFQ08198.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 160
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D+ M AL +R +G V ++ ++G V+ T HAE+ A+
Sbjct: 3 DSELMGLALEEARKAAALGEV----PVGAVVARNGEVVAAAHNTRETEKNALHHAELLAI 58
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ A ++ G +VTLEPC
Sbjct: 59 DAACKKLGGWRLWECELFVTLEPCPMC 85
>gi|150402044|ref|YP_001329338.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C7]
gi|150033074|gb|ABR65187.1| CMP/dCMP deaminase zinc-binding [Methanococcus maripaludis C7]
Length = 145
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
FM A++ ++ + + ++V +IGRG HAE+ ALE AG
Sbjct: 4 FMDEAIKEAKLGLKEGGI--PIGAVLVYKNKIIGRGHNRRVQNNSAILHAEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
R Y TL PC
Sbjct: 62 LTSDVYRNCELYTTLSPCIMCS 83
>gi|291521262|emb|CBK79555.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
Length = 160
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ C+IV +G +I RG HAE+ A+ +A + G T Y+TLEPC
Sbjct: 25 PIGCVIVYEGKIIARGYNKRNKEKNTLSHAEMNAIRKASKYLGDWRLEGCTMYITLEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|258508144|ref|YP_003170895.1| guanine deaminase [Lactobacillus rhamnosus GG]
gi|258539359|ref|YP_003173858.1| guanine deaminase [Lactobacillus rhamnosus Lc 705]
gi|257148071|emb|CAR87044.1| Guanine deaminase [Lactobacillus rhamnosus GG]
gi|257151035|emb|CAR90007.1| Guanine deaminase [Lactobacillus rhamnosus Lc 705]
gi|259649462|dbj|BAI41624.1| deaminase [Lactobacillus rhamnosus GG]
Length = 155
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
FM+ A ++ +V + P C+IVK+G V+ R + H E+ A+ +AG
Sbjct: 6 FMAMADEEAKANVNGSDGGP-FGCVIVKNGQVVSRAHNRVLVDHDPTAHGEITAIRKAGQ 64
Query: 65 ----EEARGATAYVTLEPCSHY 82
+ G Y + PC
Sbjct: 65 ALGTHDLSGCELYTSAMPCPMC 86
>gi|77919044|ref|YP_356859.1| deoxycytidylate deaminase [Pelobacter carbinolicus DSM 2380]
gi|77545127|gb|ABA88689.1| deoxycytidylate deaminase [Pelobacter carbinolicus DSM 2380]
Length = 158
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S++ FM A +R T V ++VKD ++ G
Sbjct: 1 MERPSWEEYFMEIARLVARRS---TCLRRQVGAVLVKDKNILATGYNGTPSGLRHCSEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GA + T PC +
Sbjct: 58 CLRQLQNVPSGERHELCRGLHAEQNAIIQAAKHGTNISGAILFCTNTPCVICSKM 112
>gi|326692447|ref|ZP_08229452.1| ComE operon protein 2 [Leuconostoc argentinum KCTC 3773]
Length = 160
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP---------- 53
S+D F++ A S T T V ++VK+ +I G G P
Sbjct: 7 SWDQYFIAQAAILSTRS---TCTRLHVGAVLVKNNRIIASGYNGAVAGTPHCTDVGDLIV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G AT YVT PC H
Sbjct: 64 DGHCIRAVHAEQNALMQAAQMGISVADATVYVTDVPCVHC 103
>gi|332977120|gb|EGK13924.1| guanine deaminase [Desmospora sp. 8437]
Length = 153
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 9 RFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+M A+ + R G +IVKDG ++G+GV + HAE++A+
Sbjct: 5 HWMQTAIELAYENTRREKGR-----PFGAIIVKDGKIVGKGVNQILATHDPTMHAELEAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA + Y + +PC
Sbjct: 60 REASRTLATSDLSDCELYASGKPCPMC 86
>gi|330892455|gb|EGH25116.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. mori str. 301020]
gi|330894515|gb|EGH27176.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
syringae pv. mori str. 301020]
Length = 169
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V++G +IGRG HAE+ A+ +A G+T YVTLEPCS
Sbjct: 33 PVGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCS 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|325519416|gb|EGC98819.1| tRNA-adenosine deaminase [Burkholderia sp. TJI49]
Length = 193
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
PVS+ D FM L + + V ++V+ VI RG G HAE+
Sbjct: 25 PVSARDVHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 82
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 83 AALRMAAQHLQNYRMPGCELYVTLEPCLMC 112
>gi|313115327|ref|ZP_07800802.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622358|gb|EFQ05838.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 159
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT--------- 47
M + +D FM AL + N V IV + ++ G
Sbjct: 1 MKRTDYINWDEYFMGIALLTAMRSK---DPNSQVGACIVSSENKILSLGYNGMPIGCSDD 57
Query: 48 ----AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ A +GA YVTL PC+
Sbjct: 58 EMPWEREGAPLDTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNEC 106
>gi|317120920|ref|YP_004100923.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
gi|315590900|gb|ADU50196.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885]
Length = 207
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V + V DG +I RG HAE+ L EA G G T YVTLEPC
Sbjct: 66 PVGAVAVHDGRIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPCP 125
Query: 81 HY 82
Sbjct: 126 MC 127
>gi|118586582|ref|ZP_01544023.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC
BAA-1163]
gi|118432961|gb|EAV39686.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC
BAA-1163]
Length = 157
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D+ +M A+ + ++ L +IV+D VI HAE+ A+ +
Sbjct: 3 DSVYMKLAIEQANENIVL-KEGGPFGAVIVRDQEVICAAHNMVLANLDPTAHAEIIAIRK 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + + T Y + PC
Sbjct: 62 ACKVLATRDLSDCTLYTSAYPCPMC 86
>gi|186685266|ref|YP_001868462.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
PCC 73102]
gi|186467718|gb|ACC83519.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
PCC 73102]
Length = 226
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ +++ RG+ ++V GG A+ + + + ++ L I+ G PSP+E
Sbjct: 139 WDRAYSLMAERGIHKVIVLGGGALTAALLKAGRINDWWLTIWPIIYGGKHAPSPVEGEGF 198
Query: 335 ----EKNFMCVRRDYFGSDVCLEYI 355
+ V GS + L Y
Sbjct: 199 LPQAAPHLQLVETRQVGSQLFLNYR 223
>gi|89257159|ref|YP_514521.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. holarctica LVS]
gi|115315498|ref|YP_764221.1| cytosine/adenosine deaminase [Francisella tularensis subsp.
holarctica OSU18]
gi|134302708|ref|YP_001122676.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Francisella tularensis
subsp. tularensis WY96-3418]
gi|156503384|ref|YP_001429449.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|187932249|ref|YP_001892234.1| zinc-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|290953357|ref|ZP_06557978.1| zinc-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|295313404|ref|ZP_06804011.1| zinc-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|89144990|emb|CAJ80350.1| Zinc-binding domain protein [Francisella tularensis subsp.
holarctica LVS]
gi|115130397|gb|ABI83584.1| probable cytosine/adenosine deaminase [Francisella tularensis
subsp. holarctica OSU18]
gi|134050485|gb|ABO47556.1| Cytidine and deoxycytidylate deaminase Zinc-binding domain
protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156253987|gb|ABU62493.1| cytidine/deoxycytidylate deaminase, zinc-binding domain protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|187713158|gb|ACD31455.1| zinc-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 153
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ L A YVTLEPC
Sbjct: 57 HAEILVLRSAALKLGNYRLVNTKLYVTLEPCIMC 90
>gi|224122016|ref|XP_002318729.1| predicted protein [Populus trichocarpa]
gi|222859402|gb|EEE96949.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ AL + N V +V K+GI++G G
Sbjct: 68 SWDDYFMAIALLSAERSK---DPNRQVGACLVSKNGIILGIGYNGFPRGCSDDDLPWAKK 124
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
+ G P HAEV A+ A G YVT+ PC+
Sbjct: 125 SKSGDPLETKYPYVCHAEVNAILNTNHASAVGQRLYVTMFPCNEC 169
>gi|333031276|ref|ZP_08459337.1| Guanine deaminase [Bacteroides coprosuis DSM 18011]
gi|332741873|gb|EGJ72355.1| Guanine deaminase [Bacteroides coprosuis DSM 18011]
Length = 155
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S +V +I KDG ++ GV HAEV A+ A
Sbjct: 4 EELMRKAIALSIENVKRDGG--PFGAVIAKDGEIVATGVNRVTDSCDPTAHAEVSAIRAA 61
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
E+ + G Y + EPC
Sbjct: 62 AEKLKTFDLSGYEIYSSCEPCPMC 85
>gi|294784089|ref|ZP_06749390.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_27]
gi|294488159|gb|EFG35504.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_27]
Length = 161
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + T YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKDCTIYVALFPCHEC 104
>gi|291614449|ref|YP_003524606.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291584561|gb|ADE12219.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 148
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
M AAL +R G V ++V+DG++IG G + HAE+ AL +A
Sbjct: 1 MRAALDLARQAAQAGEV----PVGAVVVRDGLIIGHGCNAPISRHDPSAHAEIAALRDAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ +VTLEPC
Sbjct: 57 QHIGNYRLVDCELFVTLEPCVMC 79
>gi|154247024|ref|YP_001417982.1| CMP/dCMP deaminase zinc-binding [Xanthobacter autotrophicus Py2]
gi|154161109|gb|ABS68325.1| CMP/dCMP deaminase zinc-binding [Xanthobacter autotrophicus Py2]
Length = 147
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M AL +R G V ++V+ VI R HAEV L A
Sbjct: 5 YMQMALNEARAAAERGEV----PVGAVLVRGAEVIARDGNRTRELNDPTAHAEVLVLRTA 60
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
G + YVTLEPC+
Sbjct: 61 GARLKSERLVNCDLYVTLEPCAMC 84
>gi|312142508|ref|YP_003993954.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
'sapolanicus']
gi|311903159|gb|ADQ13600.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp.
'sapolanicus']
Length = 151
Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 33/112 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M + FM A ++ T V ++VKD V+ G
Sbjct: 1 MERPDWHEYFMEMAKLVAKRA---TCLRRRVGAVLVKDRKVLATGYNGAPKDITHCEVTG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + +A G + G+T Y T +PC
Sbjct: 58 CLRTELDIPSGERHEICRGVHAEQNLVAQAAFHGVKTEGSTVYCTNQPCIIC 109
>gi|330833888|ref|YP_004408616.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
cuprina Ar-4]
gi|329566027|gb|AEB94132.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
cuprina Ar-4]
Length = 207
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 12/192 (6%)
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
++ K + H+LR++ DAI++G T D+P LT + + + + H
Sbjct: 23 YSELSCKYDKIRQHVLRSEVDAIMIGANTARIDNPSLTLKYVKGTNPIRVIVTGNGHLDQ 82
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+L P + + + L KN I L + V +
Sbjct: 83 NLR------IFSVPPLTIIYTKNENPQLENLTKNQVKIRKFLNICNILEDLYENFSVKKV 136
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVR--RDY 345
+VEGG + S I VD I L S + G G+ E G+L +F
Sbjct: 137 MVEGGGKLNWSLIKENCVDEIRLTISPRIFGS-GVSVFDGEGFSGHLSPSFKLKEAYICQ 195
Query: 346 FGSDVCLEYIGK 357
++ L YI +
Sbjct: 196 CKEEIVLTYIKR 207
>gi|295099508|emb|CBK88597.1| Deoxycytidylate deaminase [Eubacterium cylindroides T2-87]
Length = 164
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 29/108 (26%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-------- 48
M + +D FMS A ++ + V IV V+G G
Sbjct: 1 MKRTDVLSWDEYFMSMAHLSAKRSK---DPSTQVGACIVNSQKRVVGLGYNGFPKGCDDN 57
Query: 49 -----YGGC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + ++ G T YV+L PC+
Sbjct: 58 EFPWARDGEFLDTKYPYVVHAELNAILNSIQDLNGCTIYVSLFPCNEC 105
>gi|283781867|ref|YP_003372622.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
gi|283440320|gb|ADB18762.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM
6068]
Length = 157
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA--YGGCPHAEV 57
S+ D +M AA+ +R +IV G +I G H E+
Sbjct: 8 SRSALDESYMRAAIELARHV-----PQLPFGAVIVDRSSGKIIAGGFNQSAMNPTWHGEI 62
Query: 58 QALEEAGEE-ARG---ATAYVTLEPCSHY 82
AL + + Y T EPC
Sbjct: 63 VALNDLAQRGLHDRPSLALYTTAEPCPMC 91
>gi|168002130|ref|XP_001753767.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695174|gb|EDQ81519.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 191
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D F++ A + + + P +IV+DG ++ + HAE+ A+++
Sbjct: 38 DYNFLTVAAKEADMAMRKEEGGP-FGAVIVRDGEIVAQAHNEVLKQKDPTAHAEIVAIQK 96
Query: 63 AGEE-----ARGATAYVTLEPCSH 81
A ++ Y + EPC
Sbjct: 97 ACKKLGKIELSDCVIYSSCEPCPM 120
>gi|158334188|ref|YP_001515360.1| cytidine/deoxycytidylate deaminase region [Acaryochloris marina
MBIC11017]
gi|158304429|gb|ABW26046.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Acaryochloris marina MBIC11017]
Length = 165
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
++M A+ + G P V +I+ DG I G HAE+ A
Sbjct: 7 PEHQQWMEKAIALATQA-GAAGEVP-VGAVIIGPDGDCIAEGENRRERDHDPTAHAEIVA 64
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A + YVTLEPC
Sbjct: 65 LRAASQVIQSWRLHECRLYVTLEPCPMC 92
>gi|15605930|ref|NP_213307.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
gi|2983103|gb|AAC06708.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
Length = 224
Score = 69.2 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 9/206 (4%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + + + +H +RA+ D I+VG TV D+P LT R +P
Sbjct: 18 LTLYRGASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETVRTDNPSLTVRYAK--GKNP 75
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKK 277
+RII + LD+ ++ T +I TE ++ + ++ + D K
Sbjct: 76 VRIIPCSTANVPLDANVLNTKEAPTIIATTERAPKERLEKIKELGAEVIVVGDELVDFDK 135
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
LL L RG+ SL+VEGGA++ F+ R+VD I L +++G +P+ + +K
Sbjct: 136 LLPELYRRGIKSLMVEGGASINWEFVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKL 195
Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQE 363
+ + ++ + E
Sbjct: 196 KNLLHLR-----LRSHFVRGKQLITE 216
>gi|255626047|gb|ACU13368.1| unknown [Glycine max]
Length = 170
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
+F++ A+ + V + +IV++ ++ HAE+ A+ EA
Sbjct: 17 KFLTMAIEEAYKAV-ESGHGRPFGAVIVRNDEILSSCHNMVVRNADPTAHAEITAIREAC 75
Query: 65 EEAR-----GATAYVTLEPCSHY 82
+ + Y + EPC
Sbjct: 76 RKLNQVELADSEIYASCEPCPMC 98
>gi|239832713|ref|ZP_04681042.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG
3301]
gi|239824980|gb|EEQ96548.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG
3301]
Length = 156
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
S D F+ A++ + ++ ++VK G VI GV HAE+ AL
Sbjct: 2 SSDGTFLDQAIKLAFDNIEQGGR--PFGAVVVKGGEVIATGVNRMQADCDPTAHAELLAL 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ G Y + +PC
Sbjct: 60 RAAGKALRSPRLDGCEVYASGQPCPMC 86
>gi|308177840|ref|YP_003917246.1| nucleoside deaminase-like protein [Arthrobacter arilaitensis
Re117]
gi|307745303|emb|CBT76275.1| nucleoside deaminase-like protein [Arthrobacter arilaitensis
Re117]
Length = 156
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61
FD + M AA+ S + + ++V +G VI + G HAE+ A+
Sbjct: 2 FDPQLMQAAIDQSLLAL-EADDSGPFGAVVVLEGKVISAACNSVVGSMDPTAHAEINAIR 60
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
AG+ + Y + EPC
Sbjct: 61 AAGQVLGSFDLSECELYTSCEPCPMC 86
>gi|163844392|ref|YP_001622047.1| hypothetical protein BSUIS_B0208 [Brucella suis ATCC 23445]
gi|163675115|gb|ABY39225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 157
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + +IV+DG +I R HAE+ + +AG
Sbjct: 16 MDIALEEA-HAAGERGEVP-IGAIIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEM 73
Query: 65 ---EEARGATAYVTLEPCSHY 82
E YVTLEPC+
Sbjct: 74 LGSERLIDCDLYVTLEPCAMC 94
>gi|326474735|gb|EGD98744.1| deoxycytidylate deaminase [Trichophyton tonsurans CBS 112818]
gi|326484864|gb|EGE08874.1| deoxycytidylate deaminase [Trichophyton equinum CBS 127.97]
Length = 348
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IVKD V+ G GGCP
Sbjct: 185 AWDQYFMQLASLAAQRSNCMKR---RVGCVIVKDNRVMSTGYNGTPRNMKNCNEGGCPRC 241
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + G+ Y PC
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCDTCPCLTCS 289
>gi|226310134|ref|YP_002770028.1| guanine deaminase [Brevibacillus brevis NBRC 100599]
gi|226093082|dbj|BAH41524.1| guanine deaminase [Brevibacillus brevis NBRC 100599]
Length = 156
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
+M A++ + L+VKDG V+GRG T+ HAE+QA+ E
Sbjct: 4 ETWMGQAVQIAFENVRDKVGG--PFGALVVKDGQVVGRGRNEVTTSNDPTAHAEIQAIRE 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + Y + EPC
Sbjct: 62 ACRHLETFQLNDCDLYTSCEPCPMC 86
>gi|189462876|ref|ZP_03011661.1| hypothetical protein BACCOP_03576 [Bacteroides coprocola DSM
17136]
gi|189430492|gb|EDU99476.1| hypothetical protein BACCOP_03576 [Bacteroides coprocola DSM
17136]
Length = 161
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S +V +I K+G +I GV HAEV A+ A
Sbjct: 10 EELMRKAIELSVQNVAEGGG--PFGAVIAKNGEIIAMGVNRVTPDCDPTAHAEVSAIRTA 67
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ + G Y + EPC
Sbjct: 68 AKILGTFDLSGCEIYTSCEPCPMC 91
>gi|218440469|ref|YP_002378798.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
gi|218173197|gb|ACK71930.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
Length = 162
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQ 58
R+MS A+ ++ G V +I+ + G +I G HAE+
Sbjct: 15 DHKRWMSRAITLAQEAAQAGDV----PVGAVIIDEKGKLIAEGSNRKERDQDPTAHAEII 70
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
L A + + YVTLEPC
Sbjct: 71 VLRRASQVLQTWHLQQCKLYVTLEPCPMC 99
>gi|222055762|ref|YP_002538124.1| dCMP deaminase [Geobacter sp. FRC-32]
gi|221565051|gb|ACM21023.1| dCMP deaminase [Geobacter sp. FRC-32]
Length = 156
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D FM ++ T V +IVKD ++ G
Sbjct: 1 MSRPSWDEYFMGITHLVAKRS---TCLRRQVGAIIVKDKNILATGYNGAPSGVSHCLDVG 57
Query: 47 -------------TAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRS 85
HAE A+ +A + G+T Y T PC +
Sbjct: 58 CLREKLGIPSGERHELCRGLHAEQNAIIQAAKHGTGIEGSTLYCTTMPCIICSKM 112
>gi|71733993|ref|YP_273732.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257486822|ref|ZP_05640863.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289625968|ref|ZP_06458922.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289647969|ref|ZP_06479312.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 2250]
gi|298488192|ref|ZP_07006229.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71554546|gb|AAZ33757.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298157471|gb|EFH98554.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320325406|gb|EFW81471.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327453|gb|EFW83466.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330869365|gb|EGH04074.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330877290|gb|EGH11439.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330988661|gb|EGH86764.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331010292|gb|EGH90348.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 145
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ ++ + + +IV +G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAIDEAQLGLKEGGI--PIGSVIVHEGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPARVYRDAVLYTTLSPCAMCS 83
>gi|34762517|ref|ZP_00143514.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|237741327|ref|ZP_04571808.1| deoxycytidylate deaminase [Fusobacterium sp. 4_1_13]
gi|256846472|ref|ZP_05551929.1| ComE operon protein 2 [Fusobacterium sp. 3_1_36A2]
gi|27887795|gb|EAA24866.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|229430859|gb|EEO41071.1| deoxycytidylate deaminase [Fusobacterium sp. 4_1_13]
gi|256718241|gb|EEU31797.1| ComE operon protein 2 [Fusobacterium sp. 3_1_36A2]
Length = 161
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + T YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKDCTIYVALFPCHEC 104
>gi|114048372|ref|YP_738922.1| cytosine deaminase [Shewanella sp. MR-7]
gi|113889814|gb|ABI43865.1| Cytosine deaminase [Shewanella sp. MR-7]
Length = 145
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + AT Y TL PC
Sbjct: 58 NAGRLTAADYQKATLYSTLSPCDMCS 83
>gi|330942469|gb|EGH45066.1| cytosine deaminase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 145
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AAL ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAALDEAQLGLKEGGI--PIGSVIVHGGKIIGRGHNRRVQEGSATKHGEIDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R + Y TL PC+
Sbjct: 62 QPASVYRDSVLYTTLSPCAMCS 83
>gi|88604201|ref|YP_504379.1| CMP/dCMP deaminase, zinc-binding [Methanospirillum hungatei JF-1]
gi|88189663|gb|ABD42660.1| CMP/dCMP deaminase, zinc-binding protein [Methanospirillum hungatei
JF-1]
Length = 274
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D FM AA++ + + ++V+DG++IGRG HAE+ L+
Sbjct: 130 LDDPFMEAAIQEAEKGKEEGGI--PIGSVLVRDGVIIGRGHNRRVQNNDPMVHAEIDCLQ 187
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG + Y TL PC
Sbjct: 188 NAGRIGSYQDCILYSTLMPCFLC 210
>gi|237748635|ref|ZP_04579115.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
gi|229379997|gb|EEO30088.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13]
Length = 171
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V DG +I RG HAE+ AL A YVTLEPCS
Sbjct: 24 PVGAVVVLDGQIIARGFNQPITAHDPTAHAEIVALRNAARFCGNYRLPDCELYVTLEPCS 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|330833249|ref|YP_004402074.1| deoxycytidylate deaminase [Streptococcus suis ST3]
gi|329307472|gb|AEB81888.1| deoxycytidylate deaminase [Streptococcus suis ST3]
Length = 155
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRATCKRAK---VGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRS 85
HAEV A+ + E +G TAYVT PC + +
Sbjct: 64 DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNCSKQ 105
>gi|237751530|ref|ZP_04582010.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
gi|229372896|gb|EEO23287.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879]
Length = 397
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 24/331 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63
M AL ++ LT NP V L++ D +I G PHAEV A +EA
Sbjct: 1 MRIALDYAWSFQTLTLPNPCVGSLVLCDNTIIALQTHKKAGSPHAEVLACKEAFLYKITH 60
Query: 64 GEEARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
E A+ A + + Q + + + + + L
Sbjct: 61 DEVAKRAVLESCKKQGLNKDNILSYLINTLQNMQDSKHIHEFITAYHSGIFHNCEFFVTL 120
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
+E + + S + I + +
Sbjct: 121 EPCNHYGKTPPCAELLKTIAPKRIIIAHEDSTPKASGGANTLAHIPITHGILRDEAHKLL 180
Query: 180 KNQVHLLRAQSDAIL-VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ + ++ + + + + MR I D +
Sbjct: 181 FPFLQWQKKRNFTLFKIAHRLHGDYKNGIISNEDSRIFTHNMRCIADYIIISGATLRDDN 240
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL------LV 292
L + D + + + R + ++
Sbjct: 241 PLLDTRFSLPFYQQDSINPKILILSKTMQEKDLKNYNIAHRNVSIIRSTREIPSSGFKII 300
Query: 293 EGGAAVAHSFIN----SRL--VDSIILYRSQ 317
EGG A +S + +D I+ Y +
Sbjct: 301 EGGFAFLNSLLQDIETENAMPIDCIMGYIAP 331
>gi|227431250|ref|ZP_03913304.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227353012|gb|EEJ43184.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 168
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL ++ G + +IV + +I R HAE+ A+E
Sbjct: 14 YFMQEALNEAKIAQSEGEV----PIGAVIVYENQMIARAHNHREADQLATAHAELLAIES 69
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A + + +VTLEPC
Sbjct: 70 ANTKLKSWRLENTALFVTLEPCIMC 94
>gi|255076837|ref|XP_002502085.1| predicted protein [Micromonas sp. RCC299]
gi|226517350|gb|ACO63343.1| predicted protein [Micromonas sp. RCC299]
Length = 193
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M AL + + V C++V+DG V+ G G HAE +A++E
Sbjct: 1 MRVALEEAEGALARWEV--PVGCVVVRDGEVVASGSNRTNEKRNGTRHAEFEAVDELLAR 58
Query: 67 ARG---------ATAYVTLEPCSHY 82
G + YVT+EPC
Sbjct: 59 HGGDAVAAGFDRCSLYVTVEPCIMC 83
>gi|166712352|ref|ZP_02243559.1| hypothetical protein Xoryp_13070 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 170
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAE 56
P ++ D +M AL + P V LI+ +G V+G G ++ HAE
Sbjct: 11 PHAAIDVHWMQHALHLAECAERDHDEIP-VGALILGAEGNVLGEGWNFNIASHDPSAHAE 69
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
+ A+ +AG G T YVTLEPC+
Sbjct: 70 IVAMRDAGRRLSNHRLIGCTLYVTLEPCAMC 100
>gi|294643957|ref|ZP_06721744.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294807647|ref|ZP_06766440.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
gi|292640729|gb|EFF58960.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294445083|gb|EFG13757.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
Length = 293
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S+ D M A+ + P V +I KDGI++ + HAE A+E
Sbjct: 30 KLSNVDL--MKIAIEE--QSKCTSF--PKVGAVIAKDGIILAKAFKDEESSKHAERIAIE 83
Query: 62 EAGEE-ARGATAYVTLEPCSHYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ + GAT TLEPC + + P C IIE GI+ V++ + DP+ + +G +
Sbjct: 84 KLDKSTLNGATLVTTLEPCINIANNQPLQSCTDLIIESGIKDVIIGILDPNGAIYCQGYE 143
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
L + I V + +
Sbjct: 144 KLLENNINVSFFTPKLRNKIESSTFIYGDCNIGY 177
>gi|323525792|ref|YP_004227945.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1001]
gi|323382794|gb|ADX54885.1| CMP/dCMP deaminase zinc-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 227
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57
P+S D RFM+ + + V ++V+ VI +G G HAE+
Sbjct: 47 PISDRDRRFMAL--AQAAAEEARAAGEVPVGAVLVRGDEVIAKGFNHPIGAHDPSAHAEM 104
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
AL A + G YVTLEPC
Sbjct: 105 IALRTAAQIVENYRLPGCELYVTLEPCLMC 134
>gi|254565397|ref|XP_002489809.1| Deoxycytidine monophosphate (dCMP) deaminase required for dCTP and
dTTP synthesis [Pichia pastoris GS115]
gi|238029605|emb|CAY67528.1| Deoxycytidine monophosphate (dCMP) deaminase required for dCTP and
dTTP synthesis [Pichia pastoris GS115]
gi|328350225|emb|CCA36625.1| dCMP deaminase [Pichia pastoris CBS 7435]
Length = 308
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+DA FM A + + V C++V+D +I G G P
Sbjct: 159 SWDAYFMRLADLAALRSNCMKR---RVGCVVVRDNRIISTGY---NGTPRNMPNCNQGGC 212
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + + Y PC
Sbjct: 213 ARCNSGNSSGNGLSTCLCLHAEENALLEAGRDRISTNSILYCNTCPCLTCS 263
>gi|237716221|ref|ZP_04546702.1| CMP/dCMP deaminase [Bacteroides sp. D1]
gi|262407829|ref|ZP_06084377.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
gi|229443868|gb|EEO49659.1| CMP/dCMP deaminase [Bacteroides sp. D1]
gi|262354637|gb|EEZ03729.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22]
Length = 276
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+S+ D M A+ + P V +I KDGI++ + HAE A+E
Sbjct: 13 KLSNVDL--MKIAIEE--QSKCTSF--PKVGAVIAKDGIILAKAFKDEESSKHAERIAIE 66
Query: 62 EAGEE-ARGATAYVTLEPCSHYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ + GAT TLEPC + + P C IIE GI+ V++ + DP+ + +G +
Sbjct: 67 KLDKSTLNGATLVTTLEPCINIANNQPLQSCTDLIIESGIKDVIIGILDPNGAIYCQGYE 126
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
L + I V + +
Sbjct: 127 KLLENNINVSFFTPKLRNKIESSTFIYGDCNIGY 160
>gi|120554594|ref|YP_958945.1| deaminase-reductase domain-containing protein [Marinobacter
aquaeolei VT8]
gi|120324443|gb|ABM18758.1| bifunctional deaminase-reductase domain protein [Marinobacter
aquaeolei VT8]
Length = 288
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 16/223 (7%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+ V S + ++ S D I S I G +H +RA DA++VG GT
Sbjct: 64 CQPVTTNSRVIGQLGQSLDGRIATVTGCSRFINGDDGITHLHRIRALCDAVVVGAGTAST 123
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D+P LT R +P+R+++D ++ S + T AP + + D
Sbjct: 124 DNPRLTVRRTS--GRNPVRVVIDRRQRVP-ASHHLFTDGDAPTLHLIAGDYQPGPKTLDP 180
Query: 263 KNINIIYCDCRDLKK-------LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ + C + +L +L G+ + +EGG SF+ + L+D + +
Sbjct: 181 TGVTTVPCLGSAENEAPASPERILQVLQDFGLRKIFIEGGGVTVSSFLKAGLLDRLHVMV 240
Query: 316 SQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ ++IG G P+ +++ GSD+ +
Sbjct: 241 APMIIGS-GRPAFSLPEIDQLDEALRPKAQLV-NLGSDMLFDL 281
>gi|260495001|ref|ZP_05815130.1| ComE operon protein 2 [Fusobacterium sp. 3_1_33]
gi|260197444|gb|EEW94962.1| ComE operon protein 2 [Fusobacterium sp. 3_1_33]
Length = 161
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + T YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKNCTIYVALFPCHEC 104
>gi|223933157|ref|ZP_03625149.1| CMP/dCMP deaminase zinc-binding [Streptococcus suis 89/1591]
gi|223898218|gb|EEF64587.1| CMP/dCMP deaminase zinc-binding [Streptococcus suis 89/1591]
Length = 155
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRATCKRAK---VGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMV 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRS 85
HAEV A+ + E +G TAYVT PC + +
Sbjct: 64 DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNCSKQ 105
>gi|227545162|ref|ZP_03975211.1| tRNA-adenosine deaminase [Lactobacillus reuteri CF48-3A]
gi|300909163|ref|ZP_07126624.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri SD2112]
gi|227184845|gb|EEI64916.1| tRNA-adenosine deaminase [Lactobacillus reuteri CF48-3A]
gi|300893028|gb|EFK86387.1| tRNA-specific adenosine deaminase [Lactobacillus reuteri SD2112]
Length = 170
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+FM A+ ++ L + ++V +G VIGRG HAE+ A+ EA
Sbjct: 12 QKFMKMAIAEAKQARILDEV--PIGAIVVHEGQVIGRGHNMREKFQDVTYHAEMLAIMEA 69
Query: 64 G-----EEARGATAYVTLEPCSHYG 83
YVTLEPC
Sbjct: 70 CTNLGSWRLEDCDLYVTLEPCIMCS 94
>gi|160900241|ref|YP_001565823.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
gi|160365825|gb|ABX37438.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
Length = 475
Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IVKDG ++G+G HAEV AL +A T YVTLEPC+
Sbjct: 54 PVGAVIVKDGAIVGQGRNAPVAQGDPTAHAEVLALRDAAARLGNYRLDDCTLYVTLEPCT 113
Query: 81 HYG 83
Sbjct: 114 MCS 116
>gi|115352007|ref|YP_773846.1| CMP/dCMP deaminase [Burkholderia ambifaria AMMD]
gi|115281995|gb|ABI87512.1| tRNA-adenosine deaminase [Burkholderia ambifaria AMMD]
Length = 193
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEV 57
PVS+ D FM L + + V ++V VI RG G HAE+
Sbjct: 26 PVSARDLHFMR--LAQAAAEEARAAGEVPVGAVLVCGDEVIARGFNHPIGGHDPSAHAEM 83
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
AL A + + G YVTLEPC
Sbjct: 84 AALRMAAQHLQNYRMPGCELYVTLEPCLMC 113
>gi|288818933|ref|YP_003433281.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
gi|288788333|dbj|BAI70080.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6]
gi|308752520|gb|ADO46003.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Hydrogenobacter thermophilus TK-6]
Length = 220
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 3/178 (1%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + + + +H +RA+ D I+VG TV D+P LT R +P
Sbjct: 18 LTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRTDNPSLTVRYVQ--GKNP 75
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+RII + LD+ I +I +D V + + ++ D D KL
Sbjct: 76 VRIIPCSTANVPLDANIFSKDAPTIIITTKRAPEDKVEKIKEVGAEVWVVGEDLVDFDKL 135
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ +LV RG+ SL+VEGGA++ FI VD I L +++G +P+ + +K
Sbjct: 136 MPMLVERGIKSLMVEGGASINWEFIKRGFVDEIRLIHLPVIVGGENVPTLVGGEGFKK 193
>gi|255712643|ref|XP_002552604.1| KLTH0C08756p [Lachancea thermotolerans]
gi|238933983|emb|CAR22166.1| KLTH0C08756p [Lachancea thermotolerans]
Length = 610
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
++M A+ ++ G T+T SV ++ V+ G + G HAE ALE+ E
Sbjct: 457 HRKYMEMAINEAKK-CGPTTTAFSVGAVLTNSDKVLSTGFSRELPGNTHAEQCALEKYFE 515
Query: 66 E------ARGATAYVTLEPCSH 81
+ G+ Y T+EPCS
Sbjct: 516 QSGNRSVPPGSVLYTTMEPCSF 537
>gi|317028119|ref|XP_001400617.2| deoxycytidylate deaminase [Aspergillus niger CBS 513.88]
Length = 349
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-----TAYG----GCP-- 53
++D FM A ++ + V C++V+D VI G GCP
Sbjct: 192 NWDQYFMELASLAAQRSNCMKR---RVGCVLVRDRRVISTGYNGTPRHIRNCNEGGCPRC 248
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCLTC 295
>gi|304413544|ref|ZP_07395017.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
gi|304284387|gb|EFL92780.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1]
Length = 181
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 1 MPVSSF-DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M ++ D +M+AAL+ + G V ++V +IG G
Sbjct: 21 MILTEHNDEHWMAAALKLAARAQAAGEV----PVGAVLVLQNKIIGEGWNQPIIHHDPSA 76
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ AL +AG+ AT YVTLEPC
Sbjct: 77 HAEIMALRQAGQQQKNYRLPDATLYVTLEPCVMC 110
>gi|116494635|ref|YP_806369.1| cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
gi|227535386|ref|ZP_03965435.1| guanine deaminase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239631766|ref|ZP_04674797.1| cytosine/adenosine deaminase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|116104785|gb|ABJ69927.1| Cytosine/adenosine deaminase [Lactobacillus casei ATCC 334]
gi|227186982|gb|EEI67049.1| guanine deaminase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239526231|gb|EEQ65232.1| cytosine/adenosine deaminase [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 155
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM+ A ++ +V + P C+I+KDG V+ R + H E+ A+ +A
Sbjct: 4 KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62
Query: 64 G-----EEARGATAYVTLEPCSHY 82
G + G Y + PC
Sbjct: 63 GQALGTHDLTGCELYTSAMPCPMC 86
>gi|253752314|ref|YP_003025455.1| cytidine and deoxycytidylate deaminase [Streptococcus suis SC84]
gi|253754140|ref|YP_003027281.1| cytidine and deoxycytidylate deaminase [Streptococcus suis P1/7]
gi|253756074|ref|YP_003029214.1| cytidine and deoxycytidylate deaminase [Streptococcus suis BM407]
gi|251816603|emb|CAZ52241.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
SC84]
gi|251818538|emb|CAZ56369.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
BM407]
gi|251820386|emb|CAR46982.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
P1/7]
gi|319758710|gb|ADV70652.1| putative cytidine and deoxycytidylate deaminase [Streptococcus suis
JS14]
Length = 155
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRATCKRAK---VGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRS 85
HAEV A+ + E +G TAYVT PC + +
Sbjct: 64 DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNCSKQ 105
>gi|191638132|ref|YP_001987298.1| Guanine deaminase [Lactobacillus casei BL23]
gi|190712434|emb|CAQ66440.1| Guanine deaminase [Lactobacillus casei BL23]
gi|327382160|gb|AEA53636.1| Cytidine/deoxycytidylate deaminase [Lactobacillus casei LC2W]
gi|327385358|gb|AEA56832.1| Cytidine/deoxycytidylate deaminase [Lactobacillus casei BD-II]
Length = 155
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM+ A ++ +V + P C+I+KDG V+ R + H E+ A+ +A
Sbjct: 4 KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62
Query: 64 G-----EEARGATAYVTLEPCSHY 82
G + G Y + PC
Sbjct: 63 GQALGTHDLTGCELYTSAMPCPMC 86
>gi|307109298|gb|EFN57536.1| hypothetical protein CHLNCDRAFT_20896 [Chlorella variabilis]
Length = 156
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVI----GRGVTAYGGCPHAEV 57
D RFM AL +R G V ++V G V+ A HAE+
Sbjct: 6 DDDERFMRLALEQARLAFDDGEV----PVGAVLVSGGGQVLAAARNAAEGAADPTAHAEL 61
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
+ +A G AT YVTLEPC
Sbjct: 62 LCIRQAATAAGGWRLLDATLYVTLEPCPMC 91
>gi|302419813|ref|XP_003007737.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353388|gb|EEY15816.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 405
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
+ FM AL +R + T+ P V C+IV + VI +G+ A G HAE A
Sbjct: 54 ATHHGFMDQALDMARLAL-RTNETP-VGCVIVHNNKVIAKGMNATNVTRNGTRHAEFMA 110
>gi|116180106|ref|XP_001219902.1| hypothetical protein CHGG_00681 [Chaetomium globosum CBS 148.51]
gi|88184978|gb|EAQ92446.1| hypothetical protein CHGG_00681 [Chaetomium globosum CBS 148.51]
Length = 393
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 39/112 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+DA FMS A ++ + V C++V+D VI G G P
Sbjct: 237 SWDAYFMSLASLAAQRSNCMKR---RVGCVVVRDKRVISTGY---NGTPRGLRNCGEGGC 290
Query: 54 --------------------HAEVQALEEAG-EEAR-GATAYVTLEPCSHYG 83
HAE AL EAG E R GA Y PC
Sbjct: 291 ARCNAGEGGSGHGLATCLCIHAEENALLEAGRERLRDGAVLYCDTCPCLTCS 342
>gi|327301817|ref|XP_003235601.1| deoxycytidylate deaminase [Trichophyton rubrum CBS 118892]
gi|326462953|gb|EGD88406.1| deoxycytidylate deaminase [Trichophyton rubrum CBS 118892]
Length = 348
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IVKD V+ G GGCP
Sbjct: 185 AWDQYFMQLASLAAQRSNCMKR---RVGCVIVKDNRVMSTGYNGTPRNMKNCNEGGCPRC 241
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + G+ Y PC
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCDTCPCLTCS 289
>gi|307297235|ref|ZP_07577041.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916495|gb|EFN46877.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 168
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
S+D+ FM A + + V LIV++ ++ G G P
Sbjct: 25 SWDSYFMRLAYQVRERSSCH---HRKVGALIVRENRILSTGYNQPPSGFPHCDETECIRD 81
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G G+T YVT PCS
Sbjct: 82 ALGIPSGQNQEICYAAHAEQNAIAQAAKFGIATNGSTIYVTHRPCSVC 129
>gi|288800754|ref|ZP_06406211.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332215|gb|EFC70696.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 144
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D FM+ AL ++ + P V ++V +I R HAE+QA+
Sbjct: 4 DEWFMTKALEQAQLAL-EAGEIP-VGAVVVAKDKIIARSHNLTEMLCDVTAHAEMQAITS 61
Query: 63 -----AGEEARGATAYVTLEPCSHY 82
G+ T YVTLEPC
Sbjct: 62 GTNSLGGKYLNECTLYVTLEPCVMC 86
>gi|296160206|ref|ZP_06843025.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. Ch1-1]
gi|295889680|gb|EFG69479.1| CMP/dCMP deaminase zinc-binding [Burkholderia sp. Ch1-1]
Length = 238
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58
VS D RFM+ + + P V ++V+ VI +G G HAE+
Sbjct: 65 VSERDRRFMAL-AQAAAEEARAVGEVP-VGAVLVRGDEVIAKGFNHPIGAHDPSAHAEMV 122
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL A + G YVTLEPC
Sbjct: 123 ALRAAAQAVENYRLPGCELYVTLEPCLMC 151
>gi|303390913|ref|XP_003073687.1| deoxycytidylate deaminase [Encephalitozoon intestinalis ATCC
50506]
gi|303302834|gb|ADM12327.1| deoxycytidylate deaminase [Encephalitozoon intestinalis ATCC
50506]
Length = 149
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
SS + FM AL + V C++V+DGIV+ + HAEV +
Sbjct: 5 SSRHSFFMDMALDQAEKAFDQLEV--PVGCVVVRDGIVVSKSHNMTNANKSPLDHAEVIS 62
Query: 60 LEEAGEEARGATAYVTLEPCSHY 82
+ + +T YVT EPC
Sbjct: 63 IRS--TDCSNSTFYVTCEPCIMC 83
>gi|238926636|ref|ZP_04658396.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
gi|238885582|gb|EEQ49220.1| dCMP deaminase [Selenomonas flueggei ATCC 43531]
Length = 158
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA-YGGCP----- 53
M +S +D FM AL + + V IV + ++G G GC
Sbjct: 1 MIIS-WDEYFMGVALFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDHEYP 56
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G Y +L PC+
Sbjct: 57 WGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNEC 101
>gi|289208457|ref|YP_003460523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
sp. K90mix]
gi|288944088|gb|ADC71787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio
sp. K90mix]
Length = 262
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
S ++ S D I S +TG +H LRA D ++VG GTV+ADDP LT
Sbjct: 50 SITVAQLGQSLDGRIATQSGHSQYVTGPEDIEHLHRLRALVDGVVVGAGTVVADDPRLTV 109
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R P+R+ILDP ++ ++++ + + +++ E P + + +
Sbjct: 110 RKAE--GVHPVRVILDPDGRIQPNARVFQDGEVKTLVVHAEGHGPCDMPDNVECMVMPVD 167
Query: 270 CDCRDLKKLLTILV--GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GI 325
D R L + G+ LLVEGG F+ S +D + L + ++IG G GI
Sbjct: 168 ADGRFAPPALRDRLAAEHGLHRLLVEGGGRTVSRFLASDTLDRLHLTIAPMLIGSGRHGI 227
Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
P + + R G D +
Sbjct: 228 TLPEIDTLDQALRPPCRIFRLGGDTLYDL 256
>gi|154248745|ref|YP_001409570.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
gi|154152681|gb|ABS59913.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1]
Length = 170
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 37/108 (34%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
S+D F A + T + V LIVKD ++ G G P
Sbjct: 23 SWDEYFKRLAKVIAERS---TCVHRKVGALIVKDKRILATGYNQPPSGFPHCDEIGCIRD 79
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GAT YVT +PCS
Sbjct: 80 DLSIPSGKNQEICYGLHAEQNALIQAAKFGISTDGATIYVTHKPCSVC 127
>gi|17232364|ref|NP_488912.1| hypothetical protein all4872 [Nostoc sp. PCC 7120]
gi|17134009|dbj|BAB76571.1| all4872 [Nostoc sp. PCC 7120]
Length = 147
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
MS AL ++ G P V +I G +I G HAE+ AL A +
Sbjct: 1 MSHALELAKVA-GEAGEIP-VGAVITDASGHLIAEGENRKERDQDPTAHAEIVALRAATK 58
Query: 66 -----EARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 ILQTWRLHECTLYVTLEPCPMC 80
>gi|291459912|ref|ZP_06599302.1| cytidine/deoxycytidylate deaminase family protein [Oribacterium sp.
oral taxon 078 str. F0262]
gi|291417253|gb|EFE90972.1| cytidine/deoxycytidylate deaminase family protein [Oribacterium sp.
oral taxon 078 str. F0262]
Length = 179
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-------------------VIGRGVTA 48
M A+R ++ + + + CLIV DG +IGRG
Sbjct: 9 EELMRLAIREAKKA--ERNGDVPIGCLIVYDGRLPGSRADQRAEEQSIRPGEIIGRGYNR 66
Query: 49 YGGCP----HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ A+ +A T VTLEPC
Sbjct: 67 RNRDKSALKHAEISAISKACRRLGDWRLEDCTMIVTLEPCPMC 109
>gi|295676796|ref|YP_003605320.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
gi|295436639|gb|ADG15809.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
Length = 249
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ VI G G HAE+ AL A + G YVTLEPC
Sbjct: 80 PVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMVALRAAAQSLENYRLPGCELYVTLEPCL 139
Query: 81 HY 82
Sbjct: 140 MC 141
>gi|167041893|gb|ABZ06633.1| putative cytidine and deoxycytidylate deaminase zinc-binding
region [uncultured marine microorganism HF4000_133G03]
Length = 149
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
M+ A+ S V +IVKD +I G H E+ A+ +A +
Sbjct: 1 MTRAIELSIESVNTGGG--PFGSVIVKDEKIIAEGFNKVTSTNDPTAHGEIVAIRKACKS 58
Query: 66 ----EARGATAYVTLEPCSHY 82
G Y T EPC
Sbjct: 59 LNNFNLSGCELYSTCEPCPMC 79
>gi|170740596|ref|YP_001769251.1| deaminase-reductase domain-containing protein [Methylobacterium sp.
4-46]
gi|168194870|gb|ACA16817.1| bifunctional deaminase-reductase domain protein [Methylobacterium
sp. 4-46]
Length = 243
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+ + ++ S D I S I + + +H LRA DAI+VGIGTVLADDP LT
Sbjct: 33 QPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPLLT 92
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
R P R+I+DP ++ ++ ++ +++ P + + + +
Sbjct: 93 VRRVPGHS--PARVIIDPAGRIPPGAQCLREDGARRILVCG----PQARVPPGVEVLRME 146
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
+ ++ L G +L+EGGA +FI++ +D + + + +++G G P
Sbjct: 147 EPSPFPPRAVIAALGRLGFARILIEGGARTISAFIDAGAIDRLHVMVAPLLLGS-GRPGL 205
Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCL 352
P+ DV
Sbjct: 206 DLRPIAALREALRPATRSYLLCDGDVLF 233
>gi|302673289|ref|XP_003026331.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
gi|300100013|gb|EFI91428.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8]
Length = 273
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSPLEEG 332
+ LL L RGV SL+VEGGA+V SF+++ +VD+II+ + +GE G+ ++ G
Sbjct: 187 QALLKTLHERGVHSLMVEGGASVIKSFLDASQGGVVDTIIVTVAPTFVGEDGVGYGVQLG 246
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGKNL 359
F V G D K+L
Sbjct: 247 ESGGKFKHVSTQVVGVDTVFVLGPKDL 273
>gi|34557713|ref|NP_907528.1| cytosine deaminase [Wolinella succinogenes DSM 1740]
gi|34483430|emb|CAE10428.1| CYTOSINE DEAMINASE [Wolinella succinogenes]
Length = 145
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+F+ AAL ++ + + ++V DG ++GRG G HAE+ LE AG
Sbjct: 3 KFLEAALEEAQKGLDEGGI--PIGSVLVIDGKIVGRGHNQRVQKGSSILHAEMDCLENAG 60
Query: 65 E----EARGATAYVTLEPCSHYG 83
+ R AT Y TL PC
Sbjct: 61 RLSASDYRKATLYSTLSPCDMCS 83
>gi|213616341|ref|ZP_03372167.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 127
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
++G G G PHAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RV
Sbjct: 2 IVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARV 61
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVS 159
V + DP+ +V+GRGL L Q GI V + L+ R ++ LK+ S
Sbjct: 62 VAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGAS 121
Query: 160 QDNMI 164
D
Sbjct: 122 VDGRT 126
>gi|182678875|ref|YP_001833021.1| CMP/dCMP deaminase zinc-binding [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634758|gb|ACB95532.1| CMP/dCMP deaminase zinc-binding [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 151
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 13 AALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
A + G V +I+++GI++ R HAE+ A+ +A
Sbjct: 12 LAFEEAHKAAARGEV----PVGAVIMREGIILARAGNQVLADKDPTAHAEMLAIRQACAV 67
Query: 65 ---EEARGATAYVTLEPC 79
E G YVTLEPC
Sbjct: 68 LGSERLIGCDLYVTLEPC 85
>gi|91773185|ref|YP_565877.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
6242]
gi|91712200|gb|ABE52127.1| Cytosine deaminase [Methanococcoides burtonii DSM 6242]
Length = 143
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D FM A+ +R + + ++V+D ++IG+G HAE+ L
Sbjct: 1 MDE-FMQVAIDEARSGLNSGGI--PIGSVLVRDDLIIGKGHNLRVQQDDPMAHAEISCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
+AG R + Y TL PC
Sbjct: 58 DAGRVGSYRDSILYSTLMPCYLC 80
>gi|223935243|ref|ZP_03627161.1| bifunctional deaminase-reductase domain protein [bacterium
Ellin514]
gi|223896127|gb|EEF62570.1| bifunctional deaminase-reductase domain protein [bacterium
Ellin514]
Length = 244
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 16/236 (6%)
Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
+ + + + L IA + D + A VP + + LR ++DA++ G
Sbjct: 1 MVSNVQKQNRARFPFVYLNIATTADGKLAPANRKFVPFGSKRDHDHLLELRTEADAVMSG 60
Query: 197 IGTVL--------ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248
TV RL +RI++ L S+I K +I+
Sbjct: 61 ARTVDLFPVNMGPGPAKYRRMRLKNGLAEYNLRIVVSGSGSLDPRSEIFKHRFSPIIILT 120
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAVAHSFINS 305
+E R ++ C +++ + R VT LL EGG V + +
Sbjct: 121 SERAPESRLKKLRALADEVMVCGGKEVDFKAALSWLREKWAVTRLLCEGGGEVNDALFRA 180
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCLEYIG 356
LVD I L V G P+ + G ++ L Y
Sbjct: 181 DLVDEIHLTLCPWVFGGRNAPTMADGRGARTLADANQIKMKSEKRIGDELFLVYEV 236
>gi|18266045|gb|AAL67435.1|AF458409_1 deoxycytidine deaminase [Brassica oleracea]
Length = 185
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F++ A+ + V +IV V+ HAEV A+
Sbjct: 28 DSDHKFLTQAVEEAYKGV-DCGDGGPFGAVIVHKNEVVASCHNMVLKYTDPTAHAEVTAI 86
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 87 REACKKLNQIELSECEIYASCEPCPMC 113
>gi|241667466|ref|ZP_04755044.1| zinc-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254876013|ref|ZP_05248723.1| zinc-binding domain-containing protein [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842034|gb|EET20448.1| zinc-binding domain-containing protein [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 153
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCP 53
M D FM A + G + ++VKD ++ +
Sbjct: 1 MSNYPQDDIFFMQKAYEQALLAYKAGEV----PIGAVLVKDNQIVVQDFNKTIMLNDPTA 56
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVD 105
HAE+ L +A +E YVTLEPC ++ I C RV +
Sbjct: 57 HAEILVLRQAAKELENYRLVNTKLYVTLEPCIMCLGGLIQARVSELIYACDDTRVGIFSR 116
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129
+ R G++ +
Sbjct: 117 EKLHRNKNINHNLKVTSGVMTEEC 140
>gi|146319276|ref|YP_001198988.1| deoxycytidylate deaminase [Streptococcus suis 05ZYH33]
gi|146321480|ref|YP_001201191.1| deoxycytidylate deaminase [Streptococcus suis 98HAH33]
gi|145690082|gb|ABP90588.1| Deoxycytidylate deaminase [Streptococcus suis 05ZYH33]
gi|145692286|gb|ABP92791.1| Deoxycytidylate deaminase [Streptococcus suis 98HAH33]
gi|292558909|gb|ADE31910.1| Deoxycytidylate deaminase [Streptococcus suis GZ1]
Length = 161
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 13 AWDEYFAAQALLIANRATCKRAK---VGAVLVKDNKVIATGYNGSVSGTEHCLDQECLMI 69
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRS 85
HAEV A+ + E +G TAYVT PC + +
Sbjct: 70 DGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNCSKQ 111
>gi|42520340|ref|NP_966255.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410078|gb|AAS14189.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 135
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GEEA 67
M A+ ++ + + +IV +I + HAE+ A+ +A
Sbjct: 1 MELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTPTL 58
Query: 68 RGATAYVTLEPCSHY 82
A YVTLEPC
Sbjct: 59 CDADMYVTLEPCPMC 73
>gi|301066190|ref|YP_003788213.1| cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
gi|300438597|gb|ADK18363.1| Cytosine/adenosine deaminase [Lactobacillus casei str. Zhang]
Length = 155
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM+ A ++ +V + P C+I+KDG V+ R + H E+ A+ +A
Sbjct: 4 KEFMAMANEEAKANVNGSDGGP-FGCVIIKDGKVVSRAHNQVLVDHDPTAHGEITAIRKA 62
Query: 64 G-----EEARGATAYVTLEPCSHY 82
G + G Y + PC
Sbjct: 63 GQALGTHDLTGCELYTSAMPCPMC 86
>gi|289618605|emb|CBI54849.1| unnamed protein product [Sordaria macrospora]
Length = 681
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ A FM AL +R + T+ P V C++V VI RG+ + G HAE+ A+
Sbjct: 334 AMHAGFMREALDMARLAL-KTNETP-VGCVLVYKDRVIARGMNATNVSRNGTRHAELMAI 391
Query: 61 E-------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
+A E + A + S +G P +
Sbjct: 392 CALLSYSGDADLEPKNAQHQCNHDEPSFWGDVDPRDGHLFPY 433
>gi|289615498|emb|CBI57739.1| unnamed protein product [Sordaria macrospora]
Length = 363
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 37/111 (33%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D+ FM+ A ++ + V C++V+D VI G G P
Sbjct: 228 SWDSYFMALASLAAQRSNCMKR---RVGCVVVRDKRVISTGY---NGTPRGLINCGEGGC 281
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 282 GRCNEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCLTCS 332
>gi|198275609|ref|ZP_03208140.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
gi|198271238|gb|EDY95508.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135]
Length = 144
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 37/109 (33%), Gaps = 33/109 (30%)
Query: 1 MPVSSF-----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-- 53
M + D R+M AL ++ V LIVKD ++I G G P
Sbjct: 1 MKPTEHKQEILDKRYMRMALIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPAG 54
Query: 54 -----------------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 55 FENVCEDENGVTRPYVLHAEANAITKIARSSNSSEGATMYVTASPCIEC 103
>gi|194468109|ref|ZP_03074095.1| CMP/dCMP deaminase zinc-binding [Lactobacillus reuteri 100-23]
gi|194452962|gb|EDX41860.1| CMP/dCMP deaminase zinc-binding [Lactobacillus reuteri 100-23]
Length = 170
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+FM A+ ++ L + ++V DG VIG G HAE+ A+ EA
Sbjct: 12 QKFMKMAIAEAKQARILDEV--PIGAIVVHDGQVIGCGHNMREKFQDVTYHAEMLAIMEA 69
Query: 64 G-----EEARGATAYVTLEPCSHYG 83
YVTLEPC
Sbjct: 70 CTNLESWRLEDCDLYVTLEPCIMCS 94
>gi|304437889|ref|ZP_07397836.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369111|gb|EFM22789.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 158
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 27/105 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA-YGGCP----- 53
M +S +D FM AL + + V IV + ++G G GC
Sbjct: 1 MIIS-WDEYFMGVALFSAYRSK---DPHTQVGACIVNEDKHIVGVGYNGMPNGCDDHEYP 56
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G Y +L PC+
Sbjct: 57 WGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNEC 101
>gi|270159636|ref|ZP_06188292.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
gi|289165578|ref|YP_003455716.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
gi|269987975|gb|EEZ94230.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968]
gi|288858751|emb|CBJ12656.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150]
Length = 149
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQA 59
D +M A + G V ++V + ++G G ++ HAE+QA
Sbjct: 3 DQYWMRQAYEQALLAQTEGEV----PVGAILVSNENQLLGAGRNLIQKSHDPSSHAEIQA 58
Query: 60 LEEAGEEARG-----ATAYVTLEPCSHY 82
+ +A + + T YVTLEPC+
Sbjct: 59 IRQASQRLQNHRLLDTTLYVTLEPCAMC 86
>gi|113971133|ref|YP_734926.1| cytosine deaminase [Shewanella sp. MR-4]
gi|113885817|gb|ABI39869.1| Cytosine deaminase [Shewanella sp. MR-4]
Length = 145
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + AT Y TL PC
Sbjct: 58 NAGRLTAADYQKATLYSTLSPCDMCS 83
>gi|296131565|ref|YP_003638812.1| CMP/dCMP deaminase zinc-binding protein [Thermincola sp. JR]
gi|296030143|gb|ADG80911.1| CMP/dCMP deaminase zinc-binding protein [Thermincola potens JR]
Length = 155
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
++ ++M AL +R +G + +IV V+ R HAE
Sbjct: 4 LNEKHIQYMQLALEEARAAFKLGEV----PIGAVIVIGDDVVARAHNMKEQWKDATAHAE 59
Query: 57 VQALEEAGEE------ARGATAYVTLEPCSHY 82
+ A++EA ++ + A YVT+EPC
Sbjct: 60 LVAIKEAVQKLGHWRYLKDAALYVTIEPCPMC 91
>gi|308272592|emb|CBX29196.1| hypothetical protein N47_J01770 [uncultured Desulfobacterium sp.]
Length = 172
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + FM AL ++ + V C++V +I G G
Sbjct: 1 MKM--DHEYFMEKALNLAQTALEQGEF--PVGCVLVHKDKIIATG--KREGTAKSVLNEV 54
Query: 54 -HAEVQALEE-AGEEARG------ATAYVTLEPCSHY 82
HAE+ AL AG + Y T+EPC
Sbjct: 55 DHAEIIALRNLAGMKDYNEISRQEIIIYCTMEPCLMC 91
>gi|148643446|ref|YP_001273959.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
gi|261349766|ref|ZP_05975183.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
gi|148552463|gb|ABQ87591.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061]
gi|288860550|gb|EFC92848.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374]
Length = 158
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
D F++ AL+ ++ + + ++VKDG +I RG HAE+ +E
Sbjct: 3 DDTYFINEALKEAKKSLAEGGI--PIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIE 60
Query: 62 EAGEEARG----ATAYVTLEPCSHYG 83
AG + Y TL PC
Sbjct: 61 NAGRLNHEDYLQSVLYTTLSPCPMCS 86
>gi|119509443|ref|ZP_01628591.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nodularia spumigena CCY9414]
gi|119465849|gb|EAW46738.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nodularia spumigena CCY9414]
Length = 150
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
MS AL ++ G P V +I+ G +I G HAE+ AL A
Sbjct: 1 MSRALDLAQIA-GDAGEVP-VGAVIIDAGGNMIAEGENRKERDQDPTAHAEIIALRAAAN 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 SLHNWRLNQCTLYVTLEPCPMC 80
>gi|74317234|ref|YP_314974.1| tRNA-adenosine deaminase [Thiobacillus denitrificans ATCC 25259]
gi|74056729|gb|AAZ97169.1| probable cytosine/adenosine deaminases [Thiobacillus
denitrificans ATCC 25259]
Length = 151
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V L+V G ++GRG HAEV AL +A G T YVT+EPC
Sbjct: 18 PVGALVVCGGEIVGRGYNRPISSFDPTAHAEVMALRDAAARLGNYRLVGCTLYVTMEPCV 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|164424748|ref|XP_960920.2| hypothetical protein NCU06673 [Neurospora crassa OR74A]
gi|157070644|gb|EAA31684.2| hypothetical protein NCU06673 [Neurospora crassa OR74A]
Length = 404
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 37/111 (33%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D+ FM+ A ++ + V C++V+D VI G G P
Sbjct: 246 SWDSYFMALASLAAQRSNCMKR---RVGCVVVRDKRVISTGY---NGTPRGLINCGEGGC 299
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 300 GRCNEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCLTCS 350
>gi|302529655|ref|ZP_07281997.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. AA4]
gi|302438550|gb|EFL10366.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. AA4]
Length = 270
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 34/99 (34%)
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
A + DL+ + L RG+ + EGG + S + + +VD + L +
Sbjct: 171 HADPEDQRPRPRHGDVDLRAAVDELARRGLRRIDCEGGPHLFASLLAAGVVDELRLTVAP 230
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++I + + + + + L Y
Sbjct: 231 MLIAGDAPRVAMGAAIDPQQLELLSALVDDNSLLLRYRV 269
>gi|237743385|ref|ZP_04573866.1| deoxycytidylate deaminase [Fusobacterium sp. 7_1]
gi|229433164|gb|EEO43376.1| deoxycytidylate deaminase [Fusobacterium sp. 7_1]
Length = 161
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGVAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + T YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKNCTIYVALFPCHEC 104
>gi|297193429|ref|ZP_06910827.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
gi|297151779|gb|EDY67096.2| deaminase [Streptomyces pristinaespiralis ATCC 25486]
Length = 176
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL + G V +++ +G ++ G HAEV A+ A
Sbjct: 31 MRLALGEADRAAQGGDV----PVGAVVLSGEGTILAVGHNEREATGDPTAHAEVLAIRRA 86
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 87 AAVLGEWRLTGCTLVVTLEPCTMC 110
>gi|331701117|ref|YP_004398076.1| ComE operon protein 2 [Lactobacillus buchneri NRRL B-30929]
gi|329128460|gb|AEB73013.1| ComE operon protein 2 [Lactobacillus buchneri NRRL B-30929]
Length = 158
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 25/106 (23%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG--------- 51
+D FM A+ + T SV +IV+D +I G + G
Sbjct: 3 KRIKWDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGC 59
Query: 52 ---------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + GE A YVT PC +
Sbjct: 60 YLEDGHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQCTKM 105
>gi|307565958|ref|ZP_07628417.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella amnii CRIS 21A-A]
gi|307345386|gb|EFN90764.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella amnii CRIS 21A-A]
Length = 156
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M AL ++ + +IV +I R + HAE+QA+
Sbjct: 14 KKDLYYMQFALEEAKQAYKE--KEIPIGAIIVCKDRIIARAHNLTERLHDVTAHAEMQAI 71
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ G T YVT+EPC
Sbjct: 72 TIAANELGGKYLEGCTLYVTVEPCIMC 98
>gi|281421106|ref|ZP_06252105.1| guanine deaminase [Prevotella copri DSM 18205]
gi|281404641|gb|EFB35321.1| guanine deaminase [Prevotella copri DSM 18205]
Length = 155
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S+ V T P +I KDGI+I + HAEV + +A
Sbjct: 4 EELMHRAIELSKNSV-KTGGGP-FGAVIAKDGIIIAEASNSVTIDLDPTAHAEVNCIRQA 61
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + G Y + EPC
Sbjct: 62 TRKLKTFNLEGCEIYTSCEPCPMC 85
>gi|222445686|ref|ZP_03608201.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
DSM 2375]
gi|222435251|gb|EEE42416.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii
DSM 2375]
Length = 158
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
D F++ AL ++ + + ++VKDG +I RG HAE+ +E
Sbjct: 3 DDTYFINEALNEAKKSLAEGGI--PIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIE 60
Query: 62 EAGEEARG----ATAYVTLEPCSHYG 83
AG + Y TL PC
Sbjct: 61 NAGRLNHEDYLQSVLYTTLSPCPMCS 86
>gi|218961643|ref|YP_001741418.1| cytidine/deoxycytidylate deaminase family protein [Candidatus
Cloacamonas acidaminovorans]
gi|167730300|emb|CAO81212.1| cytidine/deoxycytidylate deaminase family protein [Candidatus
Cloacamonas acidaminovorans]
Length = 157
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 33/112 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+ FM A S+ L V ++++D +I G + G P
Sbjct: 1 MERPSWQQYFMEMAYLASKRSTCLRRK---VGAVLIRDNQIIATGYNGSPKGVPHCEDIG 57
Query: 54 --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G RGA Y T +PCS
Sbjct: 58 CLREQQKVPSGKNQELCRGVHAEQNAIIQAAINGSSTRGAILYCTNQPCSIC 109
>gi|108761212|ref|YP_632680.1| riboflavin biosynthesis protein RibD domain-containing protein
[Myxococcus xanthus DK 1622]
gi|108465092|gb|ABF90277.1| RibD domain protein [Myxococcus xanthus DK 1622]
Length = 235
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGY 333
L + G+ LL+EGG + SF+ L+D + + + I G G PS +
Sbjct: 145 VLEKLRKDFGIKRLLLEGGGKINGSFLAEDLIDELSVLVAPIADGSIGTPSLFDAGEGRG 204
Query: 334 LEKNFMCVRRDYFGSD-VCLEYIGKN 358
++ V + SD + L+Y +
Sbjct: 205 PARHLKLVSCEPRKSDMLWLKYKVRK 230
>gi|313885505|ref|ZP_07819255.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eremococcus coleocola ACS-139-V-Col8]
gi|312619235|gb|EFR30674.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eremococcus coleocola ACS-139-V-Col8]
Length = 175
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61
+M AL+ + + + ++V G ++GRG HAE+ A+E
Sbjct: 14 HHETWMQEALKEADKAL--VLDEVPIGAVLVYQGQIVGRGHNVRESQERALGHAELMAIE 71
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + A+ YVTLEPC
Sbjct: 72 TANQQLGHWRLEEASLYVTLEPCPMC 97
>gi|315056975|ref|XP_003177862.1| hypothetical protein MGYG_08953 [Arthroderma gypseum CBS 118893]
gi|311339708|gb|EFQ98910.1| hypothetical protein MGYG_08953 [Arthroderma gypseum CBS 118893]
Length = 348
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++VKD V+ G GGCP
Sbjct: 185 AWDQYFMQLASLAAQRSNCMKR---RVGCVVVKDNRVMSTGYNGTPRNVKNCNEGGCPRC 241
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + G+ Y PC
Sbjct: 242 NLGQAGGTVLSTCLCIHAEENALLEAGRQRIGEGSILYCDTCPCLTCS 289
>gi|62262991|gb|AAX78118.1| unknown protein [synthetic construct]
Length = 188
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 27 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 82
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ L A YVTLEPC
Sbjct: 83 HAEILVLRSAALKLGNYRLVNTKLYVTLEPCIMC 116
>gi|322434989|ref|YP_004217201.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321162716|gb|ADW68421.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 292
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V + +I RG HAE+ AL EAG Y TLEPC+
Sbjct: 25 PVGAVLVLNNEIIARGRNRVILDSDPTAHAEIVALREAGRILGNYRLENCDLYTTLEPCA 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|255630329|gb|ACU15521.1| unknown [Glycine max]
Length = 186
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F+ A+ + V +IV + ++ HAEV A+
Sbjct: 29 DRDHKFLRKAVEEAYKGV-DCKDGGPFGVVIVHNDEIVASCHNMVLCNTDPTAHAEVTAI 87
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ + Y + EPC
Sbjct: 88 REACKKLKQIELADCEIYASCEPCPMC 114
>gi|115372516|ref|ZP_01459824.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|310819038|ref|YP_003951396.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
gi|115370478|gb|EAU69405.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|309392110|gb|ADO69569.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 230
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 5/161 (3%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFR 261
P ++ I LDP KL+ S I + V+ +D +
Sbjct: 70 PHPIPRTDFIARRDAESYAIALDPSGKLTWKSSSIDEEHVITVLTEAVSDDYLAFLRSKG 129
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ D K L + G+ LL+EGG + SF+++ L+D + + + I G
Sbjct: 130 VSYLFGGKTDLNLKKVLEKLRKEFGIKKLLLEGGGKINGSFLDADLIDELSVLVAPIADG 189
Query: 322 EGGIPSPLE---EGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
G P+ + ++ V + SD V L Y K
Sbjct: 190 AMGTPALFDAREGKGPARHLKLVSFEKRRSDLVWLRYKLKR 230
>gi|116669211|ref|YP_830144.1| tRNA-adenosine deaminase [Arthrobacter sp. FB24]
gi|116609320|gb|ABK02044.1| tRNA-adenosine deaminase [Arthrobacter sp. FB24]
Length = 167
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 18/94 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAY----GGCPHAEVQA 59
A +M AL +R +G T P + +I DG ++G G HAE+ A
Sbjct: 6 PRHAEWMGLALAEARRALG-TGDVP-IGAIVIGPDGDILGTGRNEREAHGDPTAHAEMVA 63
Query: 60 LEEA-----------GEEARGATAYVTLEPCSHY 82
+ EA G T VTLEPC+
Sbjct: 64 IREAAARLQSLPQGDGWRLAECTLVVTLEPCAMC 97
>gi|21223347|ref|NP_629126.1| deaminase [Streptomyces coelicolor A3(2)]
gi|256785550|ref|ZP_05523981.1| deaminase [Streptomyces lividans TK24]
gi|289769446|ref|ZP_06528824.1| deaminase [Streptomyces lividans TK24]
gi|20520975|emb|CAD30959.1| putative deaminase [Streptomyces coelicolor A3(2)]
gi|289699645|gb|EFD67074.1| deaminase [Streptomyces lividans TK24]
Length = 167
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 5 SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
F+ +M A+ + R G LI K G ++ G HAE
Sbjct: 12 EFERAWMDKAIELATTSVRNGGG------PFGALIAKGGEIVALGNNQVTAGLDPTAHAE 65
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V A+ A + G T + EPC
Sbjct: 66 VSAIRAACKALDTFSLEGCTLVTSCEPCPMC 96
>gi|290959312|ref|YP_003490494.1| reductase [Streptomyces scabiei 87.22]
gi|260648838|emb|CBG71952.1| putative reductase [Streptomyces scabiei 87.22]
Length = 385
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 8/147 (5%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCR 273
P+++ + L ++ T V + D + L + +
Sbjct: 80 YPLKVTVSASGDLDPAARFWHTGGEKAVYTTDKGADRLHGLGLPTGPDGVTVVSVGPELA 139
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
L + GV L+VEGG V + L D I L + + +GE P G
Sbjct: 140 WTAVLDHLADVCGVRRLMVEGGGLVHTQLLRQDLADEIQLAVAPVFVGEADAPRLFGTGA 199
Query: 334 LE----KNFMCVRRDYFGSDVCLEYIG 356
+ G V + Y
Sbjct: 200 YPGGPRSRLRLLETRPVGDIVLIRYAP 226
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59
VS D ++ A + + T SV ++V DG + RG + GG P HAE A
Sbjct: 235 VSPADRHWLDLACELAA-ACPPSRTAFSVGAVVVAEDGTELARGHSREGGDPVVHAEEAA 293
Query: 60 LEE---AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
L + A AT Y +LEPC+ R PCA+ +++ GIRRVV +PD V
Sbjct: 294 LAKIDPADPRLASATVYSSLEPCARRASRPAPCARLVLDAGIRRVVTAWREPDTFVED 351
>gi|225163582|ref|ZP_03725891.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
gi|224801817|gb|EEG20104.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
Length = 202
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D +MS A + + C+I + G VI HAE+ A+
Sbjct: 33 DDVFYMSLAYNQAIDAW--RRDEVPIGCVIERSGEVIASAHNGVESANDPTAHAEMLAIT 90
Query: 62 EAG-----EEARGATAYVTLEPCSHYGRSPPCAQ 90
+A T YVT EPC + ++
Sbjct: 91 QAASALGDWRLEECTLYVTKEPCPMCSGATLMSR 124
>gi|288934196|ref|YP_003438255.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
At-22]
gi|290508399|ref|ZP_06547770.1| cytidine/deoxycytidylate deaminase [Klebsiella sp. 1_1_55]
gi|288888925|gb|ADC57243.1| CMP/dCMP deaminase zinc-binding protein [Klebsiella variicola
At-22]
gi|289777793|gb|EFD85790.1| cytidine/deoxycytidylate deaminase [Klebsiella sp. 1_1_55]
Length = 152
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAEVQ 58
+S+ D R++ AL ++ ++ ++V+ ++ HAE+
Sbjct: 1 MSADD-RYLQRALALAKQNIADGGR--PFGAVLVRHDEIVAEAVNTFHLNGDPTAHAELN 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ E R Y + +PC
Sbjct: 58 AVRELAARLGSEVLRECVIYASGQPCPMC 86
>gi|24374802|ref|NP_718845.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
oneidensis MR-1]
gi|24349479|gb|AAN56289.1|AE015766_5 cytidine/deoxycytidylate deaminase family protein [Shewanella
oneidensis MR-1]
Length = 194
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
S D +M + + V ++VKDG+ I G + C HAE+
Sbjct: 31 SKVDEHWMR--VAMAMAEKAEAEGEVPVGAVLVKDGLQIATGYNLSISQHDPCAHAEILC 88
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L AG+ AT YVTLEPC+
Sbjct: 89 LRAAGQTVENYRLLDATLYVTLEPCAMC 116
>gi|89097617|ref|ZP_01170506.1| guanine deaminase [Bacillus sp. NRRL B-14911]
gi|89087913|gb|EAR67025.1| guanine deaminase [Bacillus sp. NRRL B-14911]
Length = 159
Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM A+ + + ++VKDG VIG G HAE+QA+ A
Sbjct: 8 YFMENAVEAALENA-AAHLGGPFGAVVVKDGTVIGTGTNRVTSLNDPTAHAEIQAIRAAC 66
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 67 LHLQDFQLSGCEIYTSCEPCPMC 89
>gi|288925498|ref|ZP_06419431.1| guanine deaminase [Prevotella buccae D17]
gi|315606630|ref|ZP_07881641.1| guanine deaminase [Prevotella buccae ATCC 33574]
gi|288337714|gb|EFC76067.1| guanine deaminase [Prevotella buccae D17]
gi|315251640|gb|EFU31618.1| guanine deaminase [Prevotella buccae ATCC 33574]
Length = 155
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M A+ S V +I ++G ++ + + HAEV A+ +A +
Sbjct: 7 MRRAIVLSEESVKHGGG--PFGAVIARNGEIVAEASNSVTIDHDPTAHAEVNAIRKATSK 64
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 65 LQNFDLEGCEIYTSCEPCPMC 85
>gi|254578372|ref|XP_002495172.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
gi|238938062|emb|CAR26239.1| ZYRO0B05082p [Zygosaccharomyces rouxii]
Length = 611
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE--- 62
++M AL + G T+T SV +++ VI G + G HAE ALE+
Sbjct: 460 HRKYMKLALEQAAK-CGPTTTAFSVGAVLINGTEVISTGYSRELPGNTHAEQCALEKYFS 518
Query: 63 ---AGEEARGATAYVTLEPCSH 81
+ E Y T+EPCS
Sbjct: 519 NTGSSELPEDTIIYTTMEPCSF 540
>gi|217076231|ref|YP_002333947.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
gi|217036084|gb|ACJ74606.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B]
Length = 170
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
S+D+ F+ A + T + V +IVKD ++ G G P
Sbjct: 18 KRESWDSYFLKIAEIIATRS---TCFHRKVGAVIVKDKRILATGYNQPPSGFPHCDDIGC 74
Query: 54 -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GAT YVT +PCS
Sbjct: 75 IRDDLNIKSGENQEVCYALHAEQNALMQAAKFGISTDGATIYVTHKPCSVC 125
>gi|123965353|ref|YP_001010434.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9515]
gi|123199719|gb|ABM71327.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9515]
Length = 220
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 9/218 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + IA S D I G + K + ++ DA + G+GT+ A
Sbjct: 1 MNTPSVAIIIASSLDGRIAFPTGGESHLGSKEDKKMLDEHLSKVDATIFGLGTLKAHQST 60
Query: 207 LTCRLNGLQEHSPM--RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
+ + + S + + P+ + + L
Sbjct: 61 YLVKNYCKNGEIKISKTQPISIVASNSKTFEKDWSYFQQPIKRWLISSNKKDVLKNIDFE 120
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
I Y + L G+ L + GGA + +SFI L+D I + + +IG
Sbjct: 121 KEIFYNNSWSETLLSIKKA--GINRLALLGGAKLINSFIKEDLIDEIKITIAPRIIGGKF 178
Query: 325 IPSPLEE----GYLEKNFMCVRRDYFGSD-VCLEYIGK 357
P E+ L++ + + + + Y
Sbjct: 179 TWIPAEQTSKIFNLKQFWKIKSIQELDKNEIYIHYTRN 216
>gi|296536225|ref|ZP_06898343.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
49957]
gi|296263447|gb|EFH09954.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC
49957]
Length = 280
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 76/212 (35%), Gaps = 13/212 (6%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ ++A + D I AG S I G H LRA DA+LVG GTV DDP LT
Sbjct: 59 CLVLGRLAQTLDGRIATAGGSSQWIGGPGDLLHTHRLRALCDAVLVGAGTVKHDDPRLTT 118
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK------ 263
R + + + + P ++V D L +
Sbjct: 119 RDCPGPDPVRIILDTSRTL---GTEYRVFAEGGPPTLLVCAEDAAERGLPRDRHGAAEVL 175
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
D+ LL L RG+ + VEGG F+ + +D + + + +++G
Sbjct: 176 RAPRAAIGGLDIATLLPKLAARGLRRIFVEGGGLTVSRFLAAGCLDRLHVTVAPVLLGS- 234
Query: 324 GIPSPL--EEGYLEKNFMCV-RRDYFGSDVCL 352
GIP+ E + G DV
Sbjct: 235 GIPAFTLPEAARIADGLRFAWGVHRLGEDVLF 266
>gi|75908250|ref|YP_322546.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC
29413]
gi|75701975|gb|ABA21651.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena
variabilis ATCC 29413]
Length = 141
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
FM A+ ++ +IVKD V+ HAE+ +
Sbjct: 4 EYFMRLAIAEAKKGDA------PYGAVIVKDDQVVAFAHNTVGRDNDPSAHAEINVVRRL 57
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPP 87
G + Y T EPC +
Sbjct: 58 TAQLQSFSLEGYSIYTTGEPCPMCAAACV 86
>gi|194333451|ref|YP_002015311.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
gi|194311269|gb|ACF45664.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
271]
Length = 154
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHA 55
M ++ FM A R + P V ++ +G ++GRG HA
Sbjct: 1 MELT----YFMEQAFREAIKA-YEKKEIP-VGAVVFDSNGSIVGRGYNQVEALSDATAHA 54
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ AL A + T VTLEPC
Sbjct: 55 EIIALTSAMATLGSKYLSDCTLAVTLEPCPMC 86
>gi|189466441|ref|ZP_03015226.1| hypothetical protein BACINT_02816 [Bacteroides intestinalis DSM
17393]
gi|189434705|gb|EDV03690.1| hypothetical protein BACINT_02816 [Bacteroides intestinalis DSM
17393]
Length = 175
Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ S +V +I KDG +I G HAEV A+ A
Sbjct: 24 EELMRKAIELSTENVANGGG--PFGAVIAKDGEIIATGTNRVTASCDPTAHAEVSAIRAA 81
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 82 ATKLGTFNLSGCEIYTSCEPCPMC 105
>gi|323701686|ref|ZP_08113358.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
nigrificans DSM 574]
gi|323533459|gb|EGB23326.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
nigrificans DSM 574]
Length = 144
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL ++ G + ++V +G ++GRG HAE+ A+ EA
Sbjct: 1 MREALVEAQKAAEKGEV----PIGAVVVAEGAIVGRGHDLRESLCDASAHAEILAMREAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ AT YVT+EPC+
Sbjct: 57 KQLGDWRLNHATLYVTVEPCAMC 79
>gi|115727549|ref|XP_789050.2| PREDICTED: similar to deaminase domain containing 1
[Strongylocentrotus purpuratus]
gi|115955250|ref|XP_001190121.1| PREDICTED: similar to deaminase domain containing 1
[Strongylocentrotus purpuratus]
Length = 201
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M S D ++M+ A+ ++ +G V CL+V + +IG G A H
Sbjct: 1 MAQSEEVYDEKWMTEAVNMAKQALGRGEV--PVGCLLVYEDQIIGTGGNAVNETKNATRH 58
Query: 55 AEVQALEEAGEEARG-----------ATAYVTLEPCSHYGRSPPCA 89
AE+ ALEEA +VT+EPC +
Sbjct: 59 AEILALEEAMRWCDDKQLEREEVFSRTKLFVTVEPCIMCAGALRIM 104
>gi|157150018|ref|YP_001450270.1| ComE operon family protein [Streptococcus gordonii str. Challis
substr. CH1]
gi|157074812|gb|ABV09495.1| comE operon protein 2 family [Streptococcus gordonii str. Challis
substr. CH1]
Length = 155
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + T V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRS---TCKRARVGAVLVKDNKVISTGYNGSVSGTEHCIDHECLII 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|258517370|ref|YP_003193592.1| CMP/dCMP deaminase zinc-binding [Desulfotomaculum acetoxidans DSM
771]
gi|257781075|gb|ACV64969.1| CMP/dCMP deaminase zinc-binding [Desulfotomaculum acetoxidans DSM
771]
Length = 160
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
FM AL + G + + V VIGRG HAE+ A
Sbjct: 1 MHTGFMRIALEEANKAYLKGEV----PIGAVAVLGRQVIGRGHNLRESLNDSTAHAEMLA 56
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG 83
L EA Y T+EPC+
Sbjct: 57 LREAARFIGDWRLNEVILYSTIEPCAMCS 85
>gi|255542370|ref|XP_002512248.1| Guanine deaminase, putative [Ricinus communis]
gi|223548209|gb|EEF49700.1| Guanine deaminase, putative [Ricinus communis]
Length = 211
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ D +F++ A+ + V ++V++ ++ HAEV A+
Sbjct: 54 NRDHKFLTRAVEEAYKGV-ECGDGGPFGAVVVRNDEIVVSCHNMVLKHTDPTAHAEVTAV 112
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 113 REACKKLDRIELSDCEIYASCEPCPMC 139
>gi|260943139|ref|XP_002615868.1| hypothetical protein CLUG_04750 [Clavispora lusitaniae ATCC 42720]
gi|238851158|gb|EEQ40622.1| hypothetical protein CLUG_04750 [Clavispora lusitaniae ATCC 42720]
Length = 315
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 39/112 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++DA FM A + + V C+IVKD V+ G G P
Sbjct: 164 TWDAYFMRLADLAALRSNCMKR---RVGCVIVKDNRVVATGY---NGTPRHLTNCNEGGC 217
Query: 54 -------------------HAEVQALEEAGEE---ARGATAYVTLEPCSHYG 83
HAE AL EAG + + Y PC
Sbjct: 218 SRCNQGQGSGAGLSTCLCLHAEENALLEAGRDRIAGENSILYCNTCPCLTCS 269
>gi|92114624|ref|YP_574552.1| cytosine deaminase [Chromohalobacter salexigens DSM 3043]
gi|91797714|gb|ABE59853.1| Cytosine deaminase [Chromohalobacter salexigens DSM 3043]
Length = 149
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGE 65
FM AA+ +R P + ++V G +IGRG G H E+ ALE AG
Sbjct: 4 FMQAAIEEARKG-YEAGGVP-IGSVLVHRGEIIGRGHNQRQQRGSAILHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
R A Y TL PC
Sbjct: 62 LPAHVYREAVLYTTLSPCPMCS 83
>gi|301096603|ref|XP_002897398.1| tRNA-specific adenosine deaminase, putative [Phytophthora
infestans T30-4]
gi|262107089|gb|EEY65141.1| tRNA-specific adenosine deaminase, putative [Phytophthora
infestans T30-4]
Length = 130
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
FM AL + V C+ V G +I HAE+ A+
Sbjct: 4 DEHEHFMREALLEGERALIRAEV--PVGCVFVHKGEIIASASNRVNELCNATMHAEIVAI 61
Query: 61 E--------EAGEEARGATAYVTLEPCSHY 82
E +A E T YVT EPC
Sbjct: 62 EAIAAKYGDKACEVLADCTLYVTCEPCIMC 91
>gi|33595634|ref|NP_883277.1| hypothetical protein BPP0953 [Bordetella parapertussis 12822]
gi|33600148|ref|NP_887708.1| hypothetical protein BB1162 [Bordetella bronchiseptica RB50]
gi|33565712|emb|CAE40360.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33567746|emb|CAE31660.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 169
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 4 SSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ D + A+ +R G L+ KDG+V+ RGV + HAE
Sbjct: 13 TPDDDALLREAIALARANARAGGR-----PFGALVAKDGVVLARGVNRMLADHDPTAHAE 67
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL EAG G Y + +PC
Sbjct: 68 LLALREAGRALRSARLDGCVVYASGQPCPMC 98
>gi|326803497|ref|YP_004321315.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
gi|326650126|gb|AEA00309.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a]
Length = 170
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------TAYGG- 51
M +D F+S AL S T V +IV+D VI G G
Sbjct: 1 MKRIPWDQYFLSQALVLSMRS---TCDRLMVGAVIVRDNRVIAGGYNGSVSGETHCSEGG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPC 79
HAE+ A+ + G GA YVT PC
Sbjct: 58 CYLEDGHCVRTIHAEMNAIIQCAKFGVSTEGAEIYVTHFPC 98
>gi|156976611|ref|YP_001447517.1| deoxycytidylate deaminase [Vibrio harveyi ATCC BAA-1116]
gi|156528205|gb|ABU73290.1| hypothetical protein VIBHAR_05385 [Vibrio harveyi ATCC BAA-1116]
Length = 168
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 22/146 (15%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G------- 51
M + S ++ RF A + W + V +I K+ ++ G Y G
Sbjct: 15 MSMISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDT 71
Query: 52 ---------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE A+ + + G +VT PC + I
Sbjct: 72 DERELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGIARVSCPEQSE 130
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 131 DFLSRWGDKIKVSQDMFDQAGVEVNW 156
>gi|315923999|ref|ZP_07920227.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622839|gb|EFV02792.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC
23263]
Length = 165
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 36/167 (21%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-------- 48
M + +D FM AL ++ V IV + ++ G
Sbjct: 7 MKRTDYLSWDQYFMGIALLSAQRSK---DPGTQVGACIVSPENKILSMGYNGMPIGCSDD 63
Query: 49 -----YGGCP---------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFII 93
G P HAE A+ +G + +GAT YVTL PC C + II
Sbjct: 64 EMPWAREGDPLDTKYLYVCHAEFNAILNSGAKTLQGATLYVTLFPC------NECTKAII 117
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
+CGI++VV D + + + +V + +
Sbjct: 118 QCGIKKVVYMEDKYPDSDAVIAAKRMMNMTGVVYQRYNEPHRDITLH 164
>gi|296273637|ref|YP_003656268.1| cytosine deaminase [Arcobacter nitrofigilis DSM 7299]
gi|296097811|gb|ADG93761.1| Cytosine deaminase [Arcobacter nitrofigilis DSM 7299]
Length = 145
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+F+ AA+ ++ + + ++V D ++GRG G HAE+ LE AG
Sbjct: 3 KFLQAAIDEAKKGIDEGGI--PIGSVLVIDDKIVGRGHNRRVQNGSAVLHAEMDCLENAG 60
Query: 65 E----EARGATAYVTLEPCSHYG 83
+ + AT Y TL PC
Sbjct: 61 RIKASDYKRATLYSTLSPCDMCS 83
>gi|239616728|ref|YP_002940050.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
gi|239505559|gb|ACR79046.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1]
Length = 170
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D+ FMS A L + V +IV++ ++ G G P
Sbjct: 24 DWDSYFMSLAHLIKERSSCL---HRKVGAIIVRENRILATGYNQPPSGFPHCNEIECIRD 80
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GAT YVT +PCS
Sbjct: 81 ALSIQSGENQEICYAAHAEQNALSQAAKFGISTDGATIYVTHKPCSIC 128
>gi|152971270|ref|YP_001336379.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|330013669|ref|ZP_08307752.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Klebsiella sp. MS 92-3]
gi|150956119|gb|ABR78149.1| putative adenosine deaminase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328533404|gb|EGF60142.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Klebsiella sp. MS 92-3]
Length = 152
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAEVQ 58
+S+ D R++ AL ++ ++ ++V++ ++ + HAE+
Sbjct: 1 MSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGDPTAHAELN 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ + R Y + +PC
Sbjct: 58 AVRDLAARLGSAVLRECVIYASGQPCPMC 86
>gi|29826479|ref|NP_828785.1| putative riboflavin-specific deaminase/reductase [Streptomyces
avermitilis MA-4680]
gi|29611277|dbj|BAC75320.1| putative riboflavin-specific deaminase/reductase [Streptomyces
avermitilis MA-4680]
Length = 226
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 13/225 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ R ++ L A+S D + + ++ ++V +RA+SDAIL+G T+ D+P
Sbjct: 1 MTARPYVLLSAAMSVDGYLDDTSPERLRLSNAEDFDRVDQVRAESDAILIGANTMRRDNP 60
Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
L + + P+++ + LS D V+ V + V A
Sbjct: 61 RLLVNSDERRAQRVADGKPEYPLKVTVTQSGDLSADLNFWHHGGDKLVVTVDSAVEKVRA 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
++ + + L + RGV L+VEGG + + + L D + L +
Sbjct: 121 TLGDLADVVGVGPELDWGLVLDEL-GRRGVGRLMVEGGGTIHTQLMAANLADEVHLAIAP 179
Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+++G+ L G + V + Y K
Sbjct: 180 LLVGQPEAAQFLGAADYPGGSTARMKVLEVRAIDDVVFVRYAPKE 224
>gi|298714567|emb|CBJ27558.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 504
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 23/97 (23%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIV------KDG--IVIGRGVTAYGGC-- 52
D RFM ALR + G + ++ +DG V+ G G
Sbjct: 333 EDDDRFMRMALRLAGRARMEGEV----PIGAILAETVPTRRDGRRRVLSTGRNEVEGRRD 388
Query: 53 --PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ L+ A + G T YVT+EPC+
Sbjct: 389 ASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMC 425
>gi|114775692|ref|ZP_01451260.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
gi|114553803|gb|EAU56184.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1]
Length = 145
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+F+ AA+ +R + + ++V DG ++GRG G HAE+ LE+AG
Sbjct: 3 KFLRAAIDEARQGMAEGGI--PIGSVLVIDGEIVGRGHNRRVQQGSAVLHAEMDCLEQAG 60
Query: 65 E----EARGATAYVTLEPCSHYG 83
+ R AT Y TL PC
Sbjct: 61 RLTAADYRRATLYSTLSPCDMCS 83
>gi|297813065|ref|XP_002874416.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297320253|gb|EFH50675.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 185
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F++ A+ + V +IV V+ HAEV A+
Sbjct: 28 DSDHKFLTQAVEEAYKGV-DCGDGGPFGAVIVHKDEVVASCHNMVLKYTDPTAHAEVTAI 86
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 87 REACKKLNKIELSECEIYASCEPCPMC 113
>gi|52550255|gb|AAU84104.1| pyrimidine reductase [uncultured archaeon GZfos37B2]
Length = 225
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKN 337
GV ++VEGG ++ S + LVD++ +Y +++G P+ +
Sbjct: 146 YEMGVRRMMVEGGGSLNWSLLYQGLVDAVYVYVGNMILGGESSPTLTDGTGFSGIDGACQ 205
Query: 338 FMCVRRDYFGSDVCLEYIGK 357
+ + +E+ K
Sbjct: 206 LELISLEQMDKGFVVEWQVK 225
>gi|170106123|ref|XP_001884273.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640619|gb|EDR04883.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 183
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ S R+M AL + + + V C+ V+DGI+I + HAE++
Sbjct: 1 MDSIHDRWMREALTMAEEALAASEV--PVGCVFVRDGIIIAKARNRTNELCNATRHAELE 58
Query: 59 ALEEAGEE-----------ARGATAYVTLEPCSHY 82
A++ + T YVT+EPC
Sbjct: 59 AIDSIMADRSLTPEISEYPLSNTTLYVTVEPCIMC 93
>gi|197123682|ref|YP_002135633.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
gi|196173531|gb|ACG74504.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
Length = 245
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + G+ LL+EGG + SF+ + ++D + L + + G G P+ + G
Sbjct: 152 VLRKLRARLGIRRLLLEGGGKINGSFLAAGVIDELSLLVAPVADGSVGTPALFDAGEPGP 211
Query: 337 NFMCV---RRDYFGSDVCLEY 354
G + + Y
Sbjct: 212 RLRLRLLSAERRPGDLLWVRY 232
>gi|15643170|ref|NP_228214.1| deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
gi|4980909|gb|AAD35489.1|AE001720_3 deoxycytidylate deaminase, putative [Thermotoga maritima MSB8]
Length = 201
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D+ FM A S T + V +IVKD ++ G
Sbjct: 55 SWDSYFMRIARMVSERS---TCVHRKVGAVIVKDHRILATGYNQPPSKFPHCNEIGCIRD 111
Query: 51 ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE AL +A G GAT YVT +PCS
Sbjct: 112 DLEINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSIC 159
>gi|254585289|ref|XP_002498212.1| ZYRO0G04972p [Zygosaccharomyces rouxii]
gi|238941106|emb|CAR29279.1| ZYRO0G04972p [Zygosaccharomyces rouxii]
Length = 358
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D FM A + + V C+IV++ VI G GGCP
Sbjct: 208 SWDTYFMKLATLAASRSNCMKRK---VGCVIVRERRVIATGYNGTPRHLTNCFNGGCPRC 264
Query: 54 --------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG + G AT Y PC
Sbjct: 265 NDGDSQNLHTCLCLHAEENALLEAGRDRIGAHATLYCDTCPCLTCS 310
>gi|150398810|ref|YP_001322577.1| CMP/dCMP deaminase zinc-binding [Methanococcus vannielii SB]
gi|150011513|gb|ABR53965.1| CMP/dCMP deaminase zinc-binding [Methanococcus vannielii SB]
Length = 146
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
+FM A++ ++ + ++V VIGRG HAE+ ALE AG
Sbjct: 3 KFMEEAIKEAKLGAIEGGI--PIGAVLVYKNKVIGRGHNKRIQKNSVVFHAEMDALENAG 60
Query: 65 EEA----RGATAYVTLEPCSHYG 83
+ Y TL PC
Sbjct: 61 RINSSIYKDCELYTTLSPCIMCS 83
>gi|221068800|ref|ZP_03544905.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
gi|220713823|gb|EED69191.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
Length = 164
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 3 VSSFD-ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+S D +++ ++R + G S ++V+DG ++ R V HAE
Sbjct: 1 MSKQDSEKYLLESIRLAMGNVKGRESATWPFGAVLVRDGKILARAVNQVDDLCDPTAHAE 60
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+QAL A + + GA Y + PCS
Sbjct: 61 MQALRIAAKALGSTDLSGAVMYASGYPCSMCH 92
>gi|294630170|ref|ZP_06708730.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
gi|292833503|gb|EFF91852.1| riboflavin/cytosine deaminase [Streptomyces sp. e14]
Length = 422
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALE 61
D ++ A + ++T SV ++V DG + RG + G P HAE AL
Sbjct: 272 PADRHWLRIACELALL-CPPSATAFSVGAVVVAADGTELARGHSREAGDPVAHAEEAALA 330
Query: 62 E---AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGL 116
+ A GAT Y +LEPC+ R PCA+ I++ G+RRVV +PD V G
Sbjct: 331 KIDPADPRLPGATVYSSLEPCARRASRPRPCARLILDAGVRRVVTAWREPDTFVEAADGA 390
Query: 117 QWLSQKGIIV 126
L+ G V
Sbjct: 391 GVLADAGAEV 400
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ L + GV L+VEGG + + +L D + L + + +G+ P G
Sbjct: 178 WHRLLEHLHDVFGVRRLMVEGGGTIHTQLLQRQLADEVQLVLAPLFVGDPAAPRLFGPGP 237
Query: 334 LEK-NFMCVRRDYFGSDVCLEYIG 356
++ V V + Y
Sbjct: 238 YQRGRLRLVETRAIEDVVLMRYEP 261
>gi|115955248|ref|XP_001190079.1| PREDICTED: similar to DEADC1 protein [Strongylocentrotus
purpuratus]
Length = 108
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M S D ++M A+ ++ +G V CL+V + +IG G A H
Sbjct: 1 MAQSEEAYDEKWMKEAVNMAKQALGRGEV--PVGCLLVYEDQIIGTGGNAANETKNATRH 58
Query: 55 AEVQALEEA-----------GEEARGATAYVTLEPCSHYGRSPPCA 89
AE+ ALEEA GE +VT+EPC +
Sbjct: 59 AEILALEEAMRWCDDKQLERGELFSQTKLFVTVEPCIMCAGALRIM 104
>gi|291455623|ref|ZP_06595013.1| cytidine and deoxycytidylate deaminase family protein
[Bifidobacterium breve DSM 20213]
gi|291382551|gb|EFE90069.1| cytidine and deoxycytidylate deaminase family protein
[Bifidobacterium breve DSM 20213]
Length = 152
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEEA 63
M AL ++ + + V ++V DG +IGRG G P HAE+ A+ EA
Sbjct: 8 EMMHGALELAKRAA--AAGDVPVGAVVVDADGQIIGRGYNTREADGDPLAHAEIIAMREA 65
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQ 90
T VTLEPC +
Sbjct: 66 ARALGSWNLSDCTLAVTLEPCPMCAGACVQTH 97
>gi|198283023|ref|YP_002219344.1| CMP/dCMP deaminase zinc-binding [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665839|ref|YP_002425229.1| cytidine and deoxycytidylate deaminase family protein
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247544|gb|ACH83137.1| CMP/dCMP deaminase zinc-binding [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518052|gb|ACK78638.1| cytidine and deoxycytidylate deaminase family protein
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 177
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQA 59
S DA +M+ AL ++ G V ++V G ++ + HAE++
Sbjct: 9 SRDAAWMALALDYAARAAGQGEV--PVGAVLVDVGGHLLAAAHNTPVRDHDPSAHAEMRV 66
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A G T YVTLEPC
Sbjct: 67 LRQAARSLQNYRLTGTTLYVTLEPCVMC 94
>gi|28950120|emb|CAD70900.1| probable dCMP deaminase [Neurospora crassa]
Length = 420
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 37/111 (33%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D+ FM+ A ++ + V C++V+D VI G G P
Sbjct: 237 SWDSYFMALASLAAQRSNCMKR---RVGCVVVRDKRVISTGY---NGTPRGLINCGEGGC 290
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 291 GRCNEGQGSGQGLSTCLCMHAEENALLEAGRERVREGAVLYCDTCPCLTCS 341
>gi|297559746|ref|YP_003678720.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844194|gb|ADH66214.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 234
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L L RGV LLVEGG + F+ S LVD + L + ++G+ P + G +
Sbjct: 145 AVLADLADRGVGRLLVEGGGHIHTLFLTSGLVDELRLAVAPFLVGQEDAPRFVVPGAFPQ 204
Query: 337 ----NFMCVRRDYFGSDVCLEYIGKN 358
V G L Y
Sbjct: 205 TPDAPMRLVEARALGDVAVLRYRLDR 230
>gi|184155085|ref|YP_001843425.1| competence protein [Lactobacillus fermentum IFO 3956]
gi|227514789|ref|ZP_03944838.1| competence protein ComEB [Lactobacillus fermentum ATCC 14931]
gi|260663629|ref|ZP_05864518.1| ComE operon protein 2 [Lactobacillus fermentum 28-3-CHN]
gi|183226429|dbj|BAG26945.1| competence protein [Lactobacillus fermentum IFO 3956]
gi|227086837|gb|EEI22149.1| competence protein ComEB [Lactobacillus fermentum ATCC 14931]
gi|260551855|gb|EEX24970.1| ComE operon protein 2 [Lactobacillus fermentum 28-3-CHN]
Length = 159
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A + T T SV ++V+D +IG G
Sbjct: 3 KRIDWDQYFMVQAALLASRS---TCTRLSVGAVLVRDKRIIGSGYNGAVAGDEHCIDVGC 59
Query: 49 --YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ AL + G GA YVT PC
Sbjct: 60 YLRDGHCVRTIHAEMNALLQCAKFGTSTDGAMVYVTDFPCLQC 102
>gi|159035903|ref|YP_001535156.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
gi|157914738|gb|ABV96165.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
Length = 165
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 7 DARFMSAALRFSRWHVG---LTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQ 58
+M AL + + V +++ DG + G HAEV
Sbjct: 17 HELWMRRALEVAVTGADPTVTVVDDIPVGAVLLGPDGTELATGRNERELTGDPTAHAEVL 76
Query: 59 ALEEAG-----EEARGATAYVTLEPCSHY 82
AL A G T VTLEPC+
Sbjct: 77 ALRRAAGRLGRWRLDGCTLVVTLEPCTMC 105
>gi|150021636|ref|YP_001306990.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
gi|149794157|gb|ABR31605.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429]
Length = 170
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
P S+D F+ +L + T + V LIVKD ++ G G P
Sbjct: 18 PQKSWDEYFLRISLIIASRS---TCIHRKVGALIVKDKRILSTGYNQPPSGFPHCNNIPC 74
Query: 54 -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G +T Y+T +PCS
Sbjct: 75 IRDDLRIPSGKNQEICYALHAEQNALMQAAKFGISTNNSTMYITHKPCSVC 125
>gi|298373649|ref|ZP_06983638.1| tRNA-specific adenosine deaminase [Bacteroidetes oral taxon 274
str. F0058]
gi|298274701|gb|EFI16253.1| tRNA-specific adenosine deaminase [Bacteroidetes oral taxon 274
str. F0058]
Length = 143
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D FM ALR + + G + ++V G +I + HAE+QA+
Sbjct: 3 DVYFMQQALREAAYAFDEGEV----PIGAVVVCAGNIIAKAHNLTERLNDVTAHAEMQAV 58
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 59 TMAANYLGGKYLNDCTLYVTLEPCVMC 85
>gi|222099239|ref|YP_002533807.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
gi|221571629|gb|ACM22441.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359]
Length = 199
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D+ FM A S T + V +IVKD ++ G
Sbjct: 53 SWDSYFMRIARMVSERS---TCFHRKVGAVIVKDHRILATGYNQPPSKFPHCNEVGCIRD 109
Query: 51 ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE AL +A G GAT YVT +PCS
Sbjct: 110 DLGINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSIC 157
>gi|322704161|gb|EFY95759.1| cytidine and deoxycytidylate deaminase [Metarhizium anisopliae
ARSEF 23]
Length = 469
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ RF+ AL +R + T+ P V C++V +G +I +G+ A G HAE A+
Sbjct: 146 AHHLRFIEEALDMARLAL-RTNETP-VGCVLVHNGTIIAKGMNATNVTRNGTRHAEFMAI 203
>gi|300786467|ref|YP_003766758.1| deaminase [Amycolatopsis mediterranei U32]
gi|299795981|gb|ADJ46356.1| deaminase [Amycolatopsis mediterranei U32]
Length = 160
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
M S S + ++ A+R + +V LIV+DG ++ GV HA
Sbjct: 1 MTTSLSAEQAWLDEAVRIATRNVENGGG--PFGALIVRDGKIVSTGVNRVTANLDPTAHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+ A + + G + EPC
Sbjct: 59 EVVAIRAACQELGTFKLDGCVLVSSCEPCPMC 90
>gi|284036841|ref|YP_003386771.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
gi|283816134|gb|ADB37972.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74]
Length = 186
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 30/104 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------GC 52
FD FM A+ ++ + + V ++ +D +I G GC
Sbjct: 24 FDDIFMDLAVNLAKRSHCIKA---QVGAVLTRDTRIISIGYNGPPAGTHNCDEEFPGVGC 80
Query: 53 P-----------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
P HAE A+ + G E G+T YVTL PC
Sbjct: 81 PRDSKGSCSLALHAEQNAILYAAKNGSEIEGSTIYVTLSPCIAC 124
>gi|92118729|ref|YP_578458.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14]
gi|91801623|gb|ABE63998.1| CMP/dCMP deaminase, zinc-binding protein [Nitrobacter hamburgensis
X14]
Length = 211
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
++ D + MS A+ R + T ++V+DG V+ + HAEV
Sbjct: 54 ITEQDRKHMSLAILTMRQAGVVDKTGGPFGAVVVRDGEVLAASGNSVLRDNDPSAHAEVN 113
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A ++ RGAT + + E C
Sbjct: 114 AIRIACKKIGAPNLRGATLFTSCECCPMC 142
>gi|313682141|ref|YP_004059879.1| cmp/dcmp deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
16994]
gi|313155001|gb|ADR33679.1| CMP/dCMP deaminase zinc-binding protein [Sulfuricurvum kujiense DSM
16994]
Length = 145
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 10/138 (7%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGC--PHAEVQALEEAGE 65
FM AL ++ + + ++V +G +IGRG G H E+ ALE AG
Sbjct: 4 FMKEALLEAQKGLEEGGI--PIGSVLVHNGKIIGRGHNRRIQKGSVILHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ + T Y TL PC + ++ ++ G + L+
Sbjct: 62 LSASLYKECTLYTTLSPCPMCSGAIALYGIPKVVVGENENFMGEEELLQSRGVTIDVLND 121
Query: 122 KGIIVDRMMESEGKIFLH 139
I L
Sbjct: 122 HNCIEMMKNFIHENPILW 139
>gi|326492115|dbj|BAJ98282.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 186
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 15/135 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-----GGCPHAEVQA 59
D +F+S A+ + V ++V++ VI G HAEV A
Sbjct: 29 DRDHKFLSKAVEEAYKGV-DCGHGGPFGAVVVRNDEVI-VGCHNMVLNNTDPTAHAEVTA 86
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ EA ++ Y + EPC + + + D +
Sbjct: 87 IREACKKLGKIELSDCEMYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDFIAD 146
Query: 112 SGRGLQWLSQKGIIV 126
+ RG + + + +
Sbjct: 147 ALRGTGFYQKANMEI 161
>gi|70726327|ref|YP_253241.1| late competence operon required for DNA binding and uptake
[Staphylococcus haemolyticus JCSC1435]
gi|68447051|dbj|BAE04635.1| late competence operon required for DNA binding and uptake
[Staphylococcus haemolyticus JCSC1435]
Length = 152
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M +D FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERLKWDEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTDGATIYVTHFPCLNC 101
>gi|116621653|ref|YP_823809.1| guanine deaminase [Candidatus Solibacter usitatus Ellin6076]
gi|116224815|gb|ABJ83524.1| Guanine deaminase [Candidatus Solibacter usitatus Ellin6076]
Length = 154
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 10 FMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
FM A+ + R G A L+VKDGIVI G HAE+ A+
Sbjct: 5 FMQQAIEMAVANVRRGGG------PFAALVVKDGIVIASGANQVTRSNDPTAHAEIVAIR 58
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
EA + G Y T EPC
Sbjct: 59 EACRVLGDFQLPGCEIYTTCEPCPMC 84
>gi|85118833|ref|XP_965519.1| hypothetical protein NCU01888 [Neurospora crassa OR74A]
gi|28927329|gb|EAA36283.1| predicted protein [Neurospora crassa OR74A]
Length = 674
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ A FM AL +R + T+ P V C++V VI RG+ + G HAE+ A+
Sbjct: 328 AMHAGFMREALDMARLAL-KTNETP-VGCVLVYKDRVIARGMNATNVSRNGTRHAELMAI 385
>gi|331266750|ref|YP_004326380.1| dCMP deaminase, competence protein [Streptococcus oralis Uo5]
gi|326683422|emb|CBZ01040.1| dCMP deaminase, competence protein [Streptococcus oralis Uo5]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
++D F + AL + + V ++VKD VI G + G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63
Query: 54 --------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E RG TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLNC 102
>gi|223984558|ref|ZP_03634689.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
12042]
gi|223963486|gb|EEF67867.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM
12042]
Length = 160
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A + + V +IV + V+G G
Sbjct: 8 SWDEYFMGLAHLSAMRSK---DPSTQVGAVIVDQEHKVVGIGYNGLPIGCSDDEFPWDRE 64
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + G T YV+L PC+
Sbjct: 65 GGMLETKYAFVVHAELNAILNSTRDLHGCTLYVSLFPCNEC 105
>gi|78776348|ref|YP_392663.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
1251]
gi|78496888|gb|ABB43428.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM
1251]
Length = 145
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 36/109 (33%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D F++ A+ ++ ++ V +IVKDG ++ G G P
Sbjct: 4 DENFINIAIEIAKASKCVSK---QVGAVIVKDGRILSTGY---NGTPAGYINCREHWEDK 57
Query: 54 --------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ G AT YVTLEPCS ++
Sbjct: 58 YTHEHHEWSKTYEIHAEMNAIIWAARKGISIENATIYVTLEPCSECSKN 106
>gi|126668408|ref|ZP_01739365.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
gi|126627117|gb|EAZ97757.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17]
Length = 167
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D +M+ AL + G V ++V DG +G G HAE+
Sbjct: 10 ANDEYWMNRALALAAQAAALGEV----PVGAVVVIDGQEVGAGFNKPISSCDPTAHAEIC 65
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
AL +A GAT YVTLEPC+
Sbjct: 66 ALRQAATYLNNYRLSGATLYVTLEPCTMC 94
>gi|86738996|ref|YP_479396.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
gi|86565858|gb|ABD09667.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
Length = 176
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 7 DARF--MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAY----GGCPHAEVQA 59
D M ALR +R V ++ +DG V+G G HAE+ A
Sbjct: 23 DRFHEAMGLALREARLAPDHADV--PVGALVVTEDGTVLGLGHNERERGADPTAHAEMIA 80
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A GAT VTLEPC+
Sbjct: 81 LRAAARRTGSWRLPGATLVVTLEPCTMC 108
>gi|307329731|ref|ZP_07608887.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306884571|gb|EFN15601.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 348
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 6/201 (2%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
S D I + +TG + +H LRA +DA++VG GT +ADDP+LT R
Sbjct: 68 GQSLDGFIATRTGDADFVTGEEDRRHLHRLRALADAVVVGAGTAVADDPQLTVRACA--G 125
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
P+R++LDP ++ LD ++ + +V + A + + + D
Sbjct: 126 THPVRVVLDPRGRVPLDRRVFTDGSAPTLWVVGATGERRPAPPDGVELLTLTEPDAFAPH 185
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L+ L RG+ +L+EGG F+++ + + + + +++G GIP +G
Sbjct: 186 QLVRALRRRGLGRVLIEGGGVTVSRFLHAGALHRLYVTVAPVLLG-DGIPGLRFDGTPVM 244
Query: 337 NFMC---VRRDYFGSDVCLEY 354
VRR G D E
Sbjct: 245 RDALRPPVRRSTLGEDTLFEL 265
>gi|322433246|ref|YP_004210467.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165638|gb|ADW71340.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 168
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + D FM+AAL +R T V C++V++G ++ + HAE
Sbjct: 1 MK-DAKDLTFMAAALEQARIGQ-ETPGGAQVGCVLVENGAIVCSSFNEGDLQFDPTAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ + + +G T Y TL+PC
Sbjct: 59 MVGIRRLCKERRSISLKGVTVYCTLQPCGMC 89
>gi|291165661|gb|EFE27710.1| cytidine/deoxycytidylate deaminase family protein [Filifactor
alocis ATCC 35896]
Length = 150
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
+M A R + + V +IVKD ++IGRG T HAE+ A+++A +
Sbjct: 4 YMEEAFREALYSYQK--EEVPVGAVIVKDDVIIGRGHNVIETHQSSVCHAEMIAIQQAQK 61
Query: 66 -----EARGATAYVTLEPCSHY 82
GA YVTLEPC
Sbjct: 62 HLRNWRLNGAKMYVTLEPCLMC 83
>gi|51245328|ref|YP_065212.1| cytidine and deoxycytidylate deaminase family protein
[Desulfotalea psychrophila LSv54]
gi|50876365|emb|CAG36205.1| related to cytidine and deoxycytidylate deaminase family protein
[Desulfotalea psychrophila LSv54]
Length = 169
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
D FM AL + + + V C+IV G V+ G HAE+ AL
Sbjct: 2 DVDESFMEVALAQAERAL--VAGEFPVGCVIVSQGEVVAVGERRNSVSANELDHAEMNAL 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
+ Y T+EPC
Sbjct: 60 RTLLAQGQPADMEKLVVYSTMEPCLMC 86
>gi|255994428|ref|ZP_05427563.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
saphenum ATCC 49989]
gi|255993141|gb|EEU03230.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium
saphenum ATCC 49989]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 34/112 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A + T SV +IVK+ ++ G
Sbjct: 9 SWDEYFMRFA-ELA--ATRTTCLRRSVGAVIVKNKHILATGYNGAPKKVPHCKDLGGCLR 65
Query: 47 ----------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ + G+ GAT Y+T +PC +
Sbjct: 66 EKLNVPSGERHELCRALHAEQNAIIQCAMSGQNIEGATIYITHQPCIICSKM 117
>gi|77917942|ref|YP_355757.1| putative deaminase [Pelobacter carbinolicus DSM 2380]
gi|77544025|gb|ABA87587.1| tRNA-adenosine deaminase [Pelobacter carbinolicus DSM 2380]
Length = 159
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA- 63
M AL + +G V ++VKDG++IGRG T+ HAE+ A+ +A
Sbjct: 1 MQEALVEASAAARLGEV----PVGAVVVKDGMIIGRGHNLRETSNDPTTHAEMIAIRQAA 56
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 57 AAIDSWRLIGCTLYVTLEPCVMC 79
>gi|258593876|emb|CBE70217.1| Cytosine deaminase (Cytosine aminohydrolase) [NC10 bacterium
'Dutch sediment']
Length = 154
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
RF+ AA +R + ++V++ VI G H E+ L
Sbjct: 6 ETHQRFIRAAFEQARKSYNEGGL--PIGAVMVENSTVIAVGHNRRVQDGDPTAHGEMDCL 63
Query: 61 EEAGEEAR--GATAYVTLEPCSHYG 83
+AG R G T Y TL PC
Sbjct: 64 RQAGRRPRYDGITLYTTLSPCMMCS 88
>gi|16081448|ref|NP_393792.1| dCMP deaminase [Thermoplasma acidophilum DSM 1728]
gi|10639455|emb|CAC11457.1| probable dCMP deaminase [Thermoplasma acidophilum]
Length = 170
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 33/113 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
++D FM A + + V +IVKD V+ G G
Sbjct: 8 TWDEYFMRMAYLAASRTNCIRRK---VGAVIVKDRNVLATGYNGPPSGTAHCDVVGCIRE 64
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE A+ +A G + +T YVT PC +
Sbjct: 65 DLKVPSGERHELCRGLHAEQNAIIQAAVHGVSIKDSTIYVTTHPCVVCSKMIM 117
>gi|117929225|ref|YP_873776.1| tRNA-adenosine deaminase [Acidothermus cellulolyticus 11B]
gi|117649688|gb|ABK53790.1| tRNA-adenosine deaminase [Acidothermus cellulolyticus 11B]
Length = 144
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
M AL+ + + P V +++ G V+GRG HAE+ AL A
Sbjct: 1 MRLALQEAARAE-KVADVP-VGAIVLGPGGDVLGRGHNQREAAADPTAHAEIVALRAAAW 58
Query: 65 ----EEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 RLGRWRLDGCTLVVTLEPCTMC 80
>gi|293365055|ref|ZP_06611772.1| cytidine and deoxycytidylate deaminase [Streptococcus oralis ATCC
35037]
gi|307702235|ref|ZP_07639195.1| comE operon protein 2 [Streptococcus oralis ATCC 35037]
gi|291316505|gb|EFE56941.1| cytidine and deoxycytidylate deaminase [Streptococcus oralis ATCC
35037]
gi|307624248|gb|EFO03225.1| comE operon protein 2 [Streptococcus oralis ATCC 35037]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E RG TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLNC 102
>gi|261855466|ref|YP_003262749.1| Guanine deaminase [Halothiobacillus neapolitanus c2]
gi|261835935|gb|ACX95702.1| Guanine deaminase [Halothiobacillus neapolitanus c2]
Length = 163
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ + M A+ FSR + +I ++G VI G HAEV A+
Sbjct: 8 EQEKQIMRQAIEFSRE-KMIAGFGGPFGAVISRNGEVIATGFNQVTSANDPTAHAEVSAI 66
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + + G Y + EPC
Sbjct: 67 RAACQVLNTFDLSGCEIYTSCEPCPMC 93
>gi|289208495|ref|YP_003460561.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
K90mix]
gi|288944126|gb|ADC71825.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
K90mix]
Length = 175
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALE 61
A +M AL + P V ++V +G + A G HAE++ L
Sbjct: 27 HAYWMDVALAQAERAA-EVGEVP-VGAVLVDAEGYCLAVAHNAPIGEHDATAHAEIRVLR 84
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
AG+ G T YVTLEPCS
Sbjct: 85 RAGKRCSNYRLTGTTLYVTLEPCSMC 110
>gi|313812411|gb|EFS50125.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL025PA1]
gi|327334354|gb|EGE76065.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
HL097PA1]
Length = 149
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R T + + +I+ +G V+ HAEV A+ A
Sbjct: 1 MTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ARDGWRLGDCTLVVTLEPCTMC 80
>gi|50843619|ref|YP_056846.1| putative cytidine and deoxycytidylate deaminase
[Propionibacterium acnes KPA171202]
gi|50841221|gb|AAT83888.1| putative cytidine and deoxycytidylate deaminase
[Propionibacterium acnes KPA171202]
gi|313765224|gb|EFS36588.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL013PA1]
gi|313771619|gb|EFS37585.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL074PA1]
gi|313794199|gb|EFS42219.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA1]
gi|313803320|gb|EFS44516.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA2]
gi|313808654|gb|EFS47114.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA2]
gi|313810633|gb|EFS48347.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL083PA1]
gi|313817055|gb|EFS54769.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL059PA1]
gi|313819106|gb|EFS56820.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL046PA2]
gi|313821181|gb|EFS58895.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA1]
gi|313823858|gb|EFS61572.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA2]
gi|313829225|gb|EFS66939.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL063PA2]
gi|313831470|gb|EFS69184.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL007PA1]
gi|313834120|gb|EFS71834.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL056PA1]
gi|313839149|gb|EFS76863.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL086PA1]
gi|314916774|gb|EFS80605.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA4]
gi|314919085|gb|EFS82916.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA1]
gi|314921113|gb|EFS84944.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA3]
gi|314926198|gb|EFS90029.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA3]
gi|314931378|gb|EFS95209.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL067PA1]
gi|314956234|gb|EFT00606.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL027PA1]
gi|314958729|gb|EFT02831.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA1]
gi|314961035|gb|EFT05136.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA2]
gi|314963855|gb|EFT07955.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL082PA1]
gi|314968860|gb|EFT12958.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA1]
gi|314974836|gb|EFT18931.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL053PA1]
gi|314977837|gb|EFT21931.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL045PA1]
gi|314979008|gb|EFT23102.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL072PA2]
gi|314984517|gb|EFT28609.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA1]
gi|314985912|gb|EFT30004.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA2]
gi|314989321|gb|EFT33412.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA3]
gi|315078338|gb|EFT50377.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL053PA2]
gi|315081352|gb|EFT53328.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL078PA1]
gi|315085008|gb|EFT56984.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL027PA2]
gi|315087538|gb|EFT59514.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA3]
gi|315089555|gb|EFT61531.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL072PA1]
gi|315095685|gb|EFT67661.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL038PA1]
gi|315099989|gb|EFT71965.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL059PA2]
gi|315102851|gb|EFT74827.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL046PA1]
gi|315106621|gb|EFT78597.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL030PA1]
gi|315110552|gb|EFT82528.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL030PA2]
gi|327325845|gb|EGE67636.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
HL096PA3]
gi|327332941|gb|EGE74673.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
HL096PA2]
gi|327448646|gb|EGE95300.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL043PA1]
gi|327450305|gb|EGE96959.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL013PA2]
gi|327451128|gb|EGE97782.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL043PA2]
gi|327455462|gb|EGF02117.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA3]
gi|327455948|gb|EGF02603.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL092PA1]
gi|327457603|gb|EGF04258.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL083PA2]
gi|328756878|gb|EGF70494.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA1]
gi|328757762|gb|EGF71378.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL020PA1]
gi|328759467|gb|EGF73083.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL025PA2]
gi|328761913|gb|EGF75422.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
HL099PA1]
gi|332676565|gb|AEE73381.1| tRNA-specific adenosine deaminase [Propionibacterium acnes 266]
Length = 149
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R T + + +I+ +G V+ HAEV A+ A
Sbjct: 1 MTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ARDGWRLGDCTLVVTLEPCTMC 80
>gi|213019012|ref|ZP_03334819.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212995121|gb|EEB55762.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 135
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GE 65
M+ A+ ++ G + +IV +I + HAE+ + +A
Sbjct: 1 MALAIEQAKLAQKDGEV----PIGAVIVNGNNIISSAHNISNDPTAHAEMLTIRQAFSTS 56
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
A YVTLEPC P CAQ I I+R+ +P G +
Sbjct: 57 TLYEAEMYVTLEPC------PMCAQAISFAKIKRLYFGAYNPKGGGVENGTRIFQFCNH 109
>gi|329890129|ref|ZP_08268472.1| guanine deaminase [Brevundimonas diminuta ATCC 11568]
gi|328845430|gb|EGF94994.1| guanine deaminase [Brevundimonas diminuta ATCC 11568]
Length = 150
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 5 SFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEV 57
R+++ A+ + G ++VKDG +I GV HAE+
Sbjct: 4 DEHRRWLTQAVDLALENVRAGGR-----PFGAVLVKDGALIASGVNRMLATNDPSSHAEM 58
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
+AL +A G + GA Y + PC + +
Sbjct: 59 EALRQAGPALGGVDLSGAVLYASGHPCPMCLAAAVMTRVSAVYYAF 104
>gi|332025338|gb|EGI65506.1| Deoxycytidylate deaminase [Acromyrmex echinatior]
Length = 182
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------- 53
+D FM+ A ++ V IV + ++G G G P
Sbjct: 10 DWDEYFMAIAFLSAKRSK---DPCTQVGACIVNNDKRIVGIGY---NGMPTGCSDDEFPW 63
Query: 54 ----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAEV A L + + T YV L PC+
Sbjct: 64 KRGLHTSLESKYLYVCHAEVNAVLNKNSSNVKDCTIYVALFPCNQC 109
>gi|269960107|ref|ZP_06174484.1| deoxycytidylate deaminase, putative [Vibrio harveyi 1DA3]
gi|269835406|gb|EEZ89488.1| deoxycytidylate deaminase, putative [Vibrio harveyi 1DA3]
Length = 152
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S ++ RF A + W + V +I K+ ++ G Y G
Sbjct: 2 ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGIARVSCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 118 SRWGDKIQVSQDMFDQAGVEVNW 140
>gi|170037331|ref|XP_001846512.1| deoxycytidylate deaminase [Culex quinquefasciatus]
gi|167880421|gb|EDS43804.1| deoxycytidylate deaminase [Culex quinquefasciatus]
Length = 193
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 39/174 (22%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP---------- 53
++ FM+ A ++ N V IV D ++G G G P
Sbjct: 24 DWNEYFMATAFLAAKRSK---DPNTQVGACIVNDERKIVGVGY---NGFPIGCGDDDFPW 77
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE+ A+ + + + T YV L PC + I
Sbjct: 78 GKNSNDPLDTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPC-----NECAKIIIQSRI 132
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
+ + + + + G+ + + +I +
Sbjct: 133 REVIYMSDKHALKKSTIASKKMFDAAGVKYWQFVPKSSRIVIDFSEIDWDNLNQ 186
>gi|75908361|ref|YP_322657.1| tRNA-adenosine deaminase [Anabaena variabilis ATCC 29413]
gi|75702086|gb|ABA21762.1| tRNA-adenosine deaminase [Anabaena variabilis ATCC 29413]
Length = 147
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
MS AL ++ G P V +I G +I G HAE+ AL A
Sbjct: 1 MSHALELAKVA-GDAGEIP-VGAVITDASGNLIAEGENRKERDQDPTAHAEIVALRAATR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 ILQTWRLHECTLYVTLEPCPMC 80
>gi|303242511|ref|ZP_07328990.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
gi|302589929|gb|EFL59698.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
Length = 157
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
FM A + + V + +IVKD ++I R HAE+ A+ A +
Sbjct: 7 FMKVAAQEAVEGV-KSGHGGPFGAVIVKDNMIIARAHNEVIKNNDPTDHAEMIAIRSAAK 65
Query: 66 -----EARGATAYVTLEPCSHY 82
+ Y + EPC
Sbjct: 66 MLERFDLSDCELYTSCEPCPMC 87
>gi|322374651|ref|ZP_08049165.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. C300]
gi|321280151|gb|EFX57190.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. C300]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E RG TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLNC 102
>gi|256421680|ref|YP_003122333.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
gi|256036588|gb|ACU60132.1| CMP/dCMP deaminase zinc-binding [Chitinophaga pinensis DSM 2588]
Length = 131
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 13/129 (10%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA- 63
M+ + + G + V +IVKDGI+IG G HAEV A+ +A
Sbjct: 1 MARCYQLADIAAKEGES----PVGSVIVKDGIIIGEGSEKSKQQKDITRHAEVVAILDAL 56
Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ G+ Y +EPC + R + S
Sbjct: 57 RNTDSLAGSVLYTNVEPCLLCSYVIRHYKIAEVVFARHSGELGGTHQPFDLLTSPDFKSW 116
Query: 122 KGIIVDRMM 130
V +
Sbjct: 117 AQPPVITIY 125
>gi|196014346|ref|XP_002117032.1| hypothetical protein TRIADDRAFT_50979 [Trichoplax adhaerens]
gi|190580254|gb|EDV20338.1| hypothetical protein TRIADDRAFT_50979 [Trichoplax adhaerens]
Length = 151
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
+M A + + G V C++V +IG+G HAE+ A+EE
Sbjct: 10 EWMEIAFELANEALVAGEV----PVGCVLVFGNKIIGKGRNEVNEVKNATRHAEMVAIEE 65
Query: 63 AGE-----------EARGATAYVTLEPCSHYG 83
A + + VT+EPC
Sbjct: 66 AYKWCENNQVRPSVAFSNSQLLVTVEPCIMCS 97
>gi|331017345|gb|EGH97401.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 145
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAIDEAQLGLDEGGI--PIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYREAVLYTTLSPCAMCS 83
>gi|310821757|ref|YP_003954115.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|309394829|gb|ADO72288.1| Cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Stigmatella aurantiaca DW4/3-1]
Length = 149
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------- 53
SS+D FM A + + T V L+V+D ++ G + G P
Sbjct: 3 ERSSWDQYFMDIARQVASRA---TCDRKHVGALLVRDRTILSTGYNGSIRGLPHCDDVGH 59
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCS 80
HAE A+ +A G GAT Y T PC
Sbjct: 60 MMENGHCVATVHAEANAIIQAAKNGVSIDGATIYTTASPCW 100
>gi|306829176|ref|ZP_07462366.1| cytidine and deoxycytidylate deaminase [Streptococcus mitis ATCC
6249]
gi|304428262|gb|EFM31352.1| cytidine and deoxycytidylate deaminase [Streptococcus mitis ATCC
6249]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E RG TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLNC 102
>gi|21227525|ref|NP_633447.1| dCMP deaminase [Methanosarcina mazei Go1]
gi|20905903|gb|AAM31119.1| dCMP deaminase [Methanosarcina mazei Go1]
Length = 153
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S D F+ A + L + +V +IV+D ++ G
Sbjct: 6 SLDEYFLEIAYVVGKRATCLRN---NVGAVIVRDKRILSTGYNGAPSGMEHCLDVGCIRE 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 63 LEKIPSGTRHEKCRAVHAEQNAIIQAALHGVSIAGATIYCTHQPCILCAKM 113
>gi|117921416|ref|YP_870608.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. ANA-3]
gi|117613748|gb|ABK49202.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. ANA-3]
Length = 145
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGEIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + AT Y TL PC
Sbjct: 58 NAGRLTAADYQKATLYSTLSPCDMCS 83
>gi|238750377|ref|ZP_04611878.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
gi|238711308|gb|EEQ03525.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380]
Length = 195
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V D VIG G HAE+ AL + G+ AT YVTLEPC
Sbjct: 53 PVGAILVLDNQVIGEGWNRPIRNNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPCV 112
Query: 81 HY 82
Sbjct: 113 MC 114
>gi|297833236|ref|XP_002884500.1| deoxycytidine deaminase [Arabidopsis lyrata subsp. lyrata]
gi|297330340|gb|EFH60759.1| deoxycytidine deaminase [Arabidopsis lyrata subsp. lyrata]
Length = 191
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+ D ++++ A+ + V +IV ++ HAE+ A
Sbjct: 37 NERDHKYLTQAVEEAYIGV-ECGDGRPFGAVIVHKNEIVVSCHNMVLKYKDPTAHAEIIA 95
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ EA ++ Y + EPC
Sbjct: 96 IREACKKLNEIKLSECELYASCEPCPMC 123
>gi|261879068|ref|ZP_06005495.1| guanine deaminase [Prevotella bergensis DSM 17361]
gi|270334349|gb|EFA45135.1| guanine deaminase [Prevotella bergensis DSM 17361]
Length = 155
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M A+ S V +T P +I ++G+V+ + + HAEV A+ A +
Sbjct: 7 MRRAIVLSEKSV-MTGGGP-FGAVIARNGVVLAEASNSVTIDHDPTAHAEVNAIRVACDR 64
Query: 67 AR-----GATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 65 LHTFDLSGCEIYCSCEPCPMC 85
>gi|297570280|ref|YP_003691624.1| Guanine deaminase [Desulfurivibrio alkaliphilus AHT2]
gi|296926195|gb|ADH87005.1| Guanine deaminase [Desulfurivibrio alkaliphilus AHT2]
Length = 156
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 7 DARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+F++A + + R G A L+V+D +IGRG HAEV+
Sbjct: 3 HEKFIAATIALAGETMRRGDGG-----PFAALVVRDHEIIGRGWNRVTSANDPTAHAEVE 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A G T YV EPC
Sbjct: 58 AIRAACAQVGDFSLAGCTLYVNCEPCPMC 86
>gi|302879427|ref|YP_003847991.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
ES-2]
gi|302582216|gb|ADL56227.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans
ES-2]
Length = 240
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++VKDG +IGRG A HAE+QAL A + G +VTLEPC
Sbjct: 99 PVGAVVVKDGQIIGRGYNAPISLHDPSAHAEMQALRAAAQYLGNYRLVGCELFVTLEPCV 158
Query: 81 HY 82
Sbjct: 159 MC 160
>gi|224136175|ref|XP_002322258.1| predicted protein [Populus trichocarpa]
gi|222869254|gb|EEF06385.1| predicted protein [Populus trichocarpa]
Length = 229
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 33/158 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++GI++G G
Sbjct: 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGIILGIGYNGFPRGCSDDKLPWAKK 126
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 127 SKSGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYF 186
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
+ D + LS GI V + +
Sbjct: 187 VEKNLNNSDIAYIA---SHKLLSMAGIKVRKHQPRMDQ 221
>gi|291452772|ref|ZP_06592162.1| deaminase [Streptomyces albus J1074]
gi|291355721|gb|EFE82623.1| deaminase [Streptomyces albus J1074]
Length = 142
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL ++ G P V +++ DG ++ HAE+ AL A
Sbjct: 1 MRQALAEAQRA-GRGGDVP-VGAVVLDPDGRLLSAAHNEREADGDPTAHAEILALRRAAA 58
Query: 66 -----EARGATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 59 RSGRWRLTDCTLVVTLEPCTMC 80
>gi|239980910|ref|ZP_04703434.1| cytidine/deoxycytidine deaminase [Streptomyces albus J1074]
Length = 168
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL ++ G P V +++ DG ++ HAE+ AL A
Sbjct: 27 MRQALAEAQRA-GRGGDVP-VGAVVLDPDGRLLSAAHNEREADGDPTAHAEILALRRAAA 84
Query: 66 -----EARGATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 85 RSGRWRLTDCTLVVTLEPCTMC 106
>gi|269838046|ref|YP_003320274.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter
thermophilus DSM 20745]
gi|269787309|gb|ACZ39452.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter
thermophilus DSM 20745]
Length = 148
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+S R+M + N + ++V+DG VI G HAE
Sbjct: 1 MSDTHERYMRL--ALEEAAKAKAAGNGAYGAVVVRDGQVIATGRNEATTTSDPTAHAETI 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ AG + G T Y T +PC
Sbjct: 59 AVRNAGMALGTLDLSGCTLYATFQPCPMC 87
>gi|227509437|ref|ZP_03939486.1| competence protein ComEB [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227191149|gb|EEI71216.1| competence protein ComEB [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 163
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
+D FM A+ + T SV +IV+D +I G + G
Sbjct: 11 KWDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGCYLV 67
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + GE A YVT PC +
Sbjct: 68 DGHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQCTKM 110
>gi|254433467|ref|ZP_05046975.1| hypothetical protein NOC27_398 [Nitrosococcus oceani AFC27]
gi|207089800|gb|EDZ67071.1| hypothetical protein NOC27_398 [Nitrosococcus oceani AFC27]
Length = 93
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M+ A+ + + ++V+DG ++GR HAEVQA+ A
Sbjct: 1 MAEAISLASEGMAD-GLGGPFGAVVVRDGEILGRACNDVIALRDPTAHAEVQAIRMACRN 59
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 60 FNDFHLEGCALYCSCEPCPMC 80
>gi|254411343|ref|ZP_05025120.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
gi|196181844|gb|EDX76831.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
Length = 143
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D FM+AA+ ++ + + ++VK+G +IG+G HAE+ L
Sbjct: 1 MDE-FMAAAIAQAKQGLREGGI--PIGSVLVKEGQIIGQGYNKRVQDNDPVTHAEIDCLR 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG Y TL PC
Sbjct: 58 HAGRIGNYNDTILYSTLMPCYLC 80
>gi|110638611|ref|YP_678820.1| cytidine/deoxycytidylate deaminase [Cytophaga hutchinsonii ATCC
33406]
gi|110281292|gb|ABG59478.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Cytophaga
hutchinsonii ATCC 33406]
Length = 159
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 52/164 (31%), Gaps = 34/164 (20%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----------- 50
FD +M A+ ++ + V ++ KD +I G
Sbjct: 3 KRPDFDDIYMELAVNLAKRSHCIKRH---VGAVLTKDTRIISIGYNGPPEKTHNCDEEWP 59
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
GCP HAE A+ A G E +GAT YVTL PC R +
Sbjct: 60 EEGCPRDSKGSCSLALHAEENAILFAVKNGTEVKGATIYVTLSPCISCARLLFASGVKKV 119
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
+ + G +LS+ G+ V + I
Sbjct: 120 IYL----HSYAEYKGLDVDEGNAFLSKFGVEVQKYSGDFSMIHE 159
>gi|299753369|ref|XP_001833230.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
cinerea okayama7#130]
gi|298410269|gb|EAU88503.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis
cinerea okayama7#130]
Length = 170
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNP---SVACLIV----KDGIVIGRGVTAY-GGC 52
M +M AL + V P V C++V +V+ G + G
Sbjct: 1 MAPHDDHIVYMKMALEEAEKAV----PVPGAFCVGCVLVARLLHKSVVLSTGYSRELPGN 56
Query: 53 PHAEVQALEEA---------------------GEEARGATAYVTLEPC-SHYGRSPPCAQ 90
HAE AL + + Y TLEPC PCA
Sbjct: 57 THAEANALAKVAEISPKEWSALSESYEASSDLSKILECTDVYTTLEPCSIRTSGLSPCAD 116
Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
+I+ +RR ++ V++P V G L GI V + E
Sbjct: 117 ALIKAKVRRCIIGVNEPPDFVKCEGADRLKAAGIEVIWLSGMEEDC 162
>gi|146292307|ref|YP_001182731.1| cytosine deaminase [Shewanella putrefaciens CN-32]
gi|145563997|gb|ABP74932.1| Cytosine deaminase [Shewanella putrefaciens CN-32]
Length = 145
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGKIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + T Y TL PC
Sbjct: 58 NAGRLSAADYQKGTLYSTLSPCDMCS 83
>gi|317494530|ref|ZP_07952943.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917460|gb|EFV38806.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 152
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
+SS D ++ AL + V +IV++G V+ V HAE+
Sbjct: 1 MSSHDE-YLQRALALAAESVEQGGR--PFGAVIVRNGEVVAEAVNTIHLNGDPTAHAELN 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
+ + R Y + +PC
Sbjct: 58 GIRDVSTRHGSTALRECVVYASGQPCPMC 86
>gi|282854964|ref|ZP_06264298.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J139]
gi|282582110|gb|EFB87493.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J139]
gi|314922049|gb|EFS85880.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL001PA1]
gi|314965899|gb|EFT09998.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL082PA2]
gi|314980659|gb|EFT24753.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA3]
gi|315090999|gb|EFT62975.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA4]
gi|315095126|gb|EFT67102.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL060PA1]
gi|315105358|gb|EFT77334.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA2]
gi|327328755|gb|EGE70515.1| tRNA-specific adenosine deaminase [Propionibacterium acnes
HL103PA1]
Length = 156
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R T + + +I+ DG V+ HAEV A+ A
Sbjct: 8 MTQALDVARRAA--TWGDVPIGAVILGADGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 65
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 66 ARDGWRLGDCTLVVTLEPCTMC 87
>gi|259503079|ref|ZP_05745981.1| ComE operon protein 2 [Lactobacillus antri DSM 16041]
gi|259168945|gb|EEW53440.1| ComE operon protein 2 [Lactobacillus antri DSM 16041]
Length = 163
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A + T SV ++V+D +I G
Sbjct: 3 KRIDWDQYFMIQAALLASRS---TCKRLSVGAVLVRDKRIIAGGYNGSVSGDDHCIDEGC 59
Query: 49 --YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G GA+ YVT PC
Sbjct: 60 YLRDGHCVRTIHAEMNAILQCARFGISTDGASLYVTDFPCLQC 102
>gi|241950489|ref|XP_002417967.1| deoxycytidylate deaminase (dCMP deaminase), putative [Candida
dubliniensis CD36]
gi|223641305|emb|CAX45685.1| deoxycytidylate deaminase (dCMP deaminase), putative [Candida
dubliniensis CD36]
Length = 337
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C+IV++ VI G G P
Sbjct: 187 TWDSYFMRLADLAALRSNCMKR---RVGCVIVRENRVIATGY---NGTPRHLTNCNEGGC 240
Query: 54 -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG + RG + Y PC
Sbjct: 241 SRCNKGQGSGALLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCLTCS 291
>gi|225456327|ref|XP_002283817.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297734422|emb|CBI15669.3| unnamed protein product [Vitis vinifera]
Length = 229
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 33/158 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++G+++G G
Sbjct: 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 126
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 127 SKTGDPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYF 186
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
+ + LS G+ V + +
Sbjct: 187 VEKRLNNSQVAYIA---SHKLLSMAGVKVRKHQPQMDQ 221
>gi|156055334|ref|XP_001593591.1| hypothetical protein SS1G_05018 [Sclerotinia sclerotiorum 1980]
gi|154702803|gb|EDO02542.1| hypothetical protein SS1G_05018 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 358
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D FM A ++ + V C++V++ VI G G P
Sbjct: 201 SWDQYFMQLASLAAQRSNCMKR---RVGCVLVREKRVISTGY---NGTPRGLLNCGEGGC 254
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E A Y PC
Sbjct: 255 PRCNEGQSCGVGLGTCLCLHAEENALLEAGRERVRENAILYCDTCPCLTCS 305
>gi|154302467|ref|XP_001551643.1| hypothetical protein BC1G_09810 [Botryotinia fuckeliana B05.10]
gi|150855299|gb|EDN30491.1| hypothetical protein BC1G_09810 [Botryotinia fuckeliana B05.10]
Length = 357
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D FM A ++ + V C++V++ VI G G P
Sbjct: 200 SWDQYFMQLASLAAQRSNCMKR---RVGCVLVREKRVISTGY---NGTPRGLLNCGEGGC 253
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E A Y PC
Sbjct: 254 SRCNEGQGSGVGLGTCLCLHAEENALLEAGRERVRENAILYCDTCPCLTCS 304
>gi|134057563|emb|CAK48917.1| unnamed protein product [Aspergillus niger]
Length = 338
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-----TAYG----GCP-- 53
++D FM A ++ + V C++V+D VI G GCP
Sbjct: 192 NWDQYFMELASLAAQRSNCMKR---RVGCVLVRDRRVISTGYNGTPRHIRNCNEGGCPRC 248
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCLTC 295
>gi|170728271|ref|YP_001762297.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908]
gi|169813618|gb|ACA88202.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908]
Length = 145
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ +D RF+ A + W + V +I +D ++ G Y G
Sbjct: 2 MTKWDVRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLTTVHSPQPSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWGDKIKISQDMFDQSGVKVDWMQ 142
>gi|115713119|ref|XP_781669.2| PREDICTED: similar to DEADC1 protein, partial [Strongylocentrotus
purpuratus]
Length = 104
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M S D ++M A+ ++ +G V CL+V + +IG G A H
Sbjct: 1 MAQSEEAYDEKWMKEAVNMAKQALGRGEV--PVGCLLVYEDQIIGTGGNAANETKNATRH 58
Query: 55 AEVQALEEA-----------GEEARGATAYVTLEPCSHYGRSPPCA 89
AE+ ALEEA GE +VT+EPC +
Sbjct: 59 AEILALEEAMRWCDDKQLERGELFSQTKLFVTVEPCIMCAGALRIM 104
>gi|309800001|ref|ZP_07694201.1| ComE operon protein 2 [Streptococcus infantis SK1302]
gi|308116400|gb|EFO53876.1| ComE operon protein 2 [Streptococcus infantis SK1302]
Length = 155
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|261364637|ref|ZP_05977520.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
gi|288567233|gb|EFC88793.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996]
Length = 243
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM AAL + G V ++V D +I + HAE++AL
Sbjct: 96 ETFMRAALVQAEQSARIGEI----PVGAVVVADNQIIAAAHNTCVSDHDISRHAEIRALA 151
Query: 62 EAGEEARG-----ATAYVTLEPCSHY 82
AG + Y+TLEPC+
Sbjct: 152 VAGAALQNYRLDECDLYITLEPCAMC 177
>gi|167044799|gb|ABZ09467.1| putative RibD C-terminal domain protein [uncultured marine
crenarchaeote HF4000_APKG8D6]
Length = 217
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 11/220 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R + A++ D + S ++ K +VH LR++ DAIL+G TV DD
Sbjct: 1 MESFRPRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKFDD 59
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---R 261
P L+ + +P+RIILD + +S S+I+KT P IIV L
Sbjct: 60 PLLSVHNIK--KKNPIRIILDSNATISSSSRILKTCSKIPTIIVVSKKAQKKNLQKLEKF 117
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G
Sbjct: 118 PVQVIVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG 177
Query: 322 EGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++ ++V L Y
Sbjct: 178 GMTSTTLVDGDGFSTIAKSIRLKLKSVSKMKNEVILHYEN 217
>gi|167044545|gb|ABZ09219.1| putative RibD C-terminal domain protein [uncultured marine
crenarchaeote HF4000_APKG6N3]
Length = 217
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R + A++ D + S ++ K +VH LR++ DAIL+G TV DD
Sbjct: 1 MESFRPRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDD 59
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---R 261
P L+ + +P+RIILD + + S+I+KT P II L
Sbjct: 60 PLLSVHNIK--KKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKF 117
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G
Sbjct: 118 PVQVIVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG 177
Query: 322 EGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356
+ ++ ++V L Y
Sbjct: 178 GMTATTLVDGDGFSTIAKSIRLKLKSVSKMKNEVILHYEN 217
>gi|330967403|gb|EGH67663.1| cytosine deaminase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 145
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAIDEAQLGLDEGGI--PIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYREAVLYTTLSPCAMCS 83
>gi|329889978|ref|ZP_08268321.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
11568]
gi|328845279|gb|EGF94843.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC
11568]
Length = 154
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 13 AALRFSRWHV--GLTSTNPSVACLIVKD--GIVIGRGV----TAYGGCPHAEVQALEEAG 64
AL ++ G V +IV + G V+GRG TA+ HAE+ AL +A
Sbjct: 1 MALDLAQAAAEAGEV----PVGAVIVDENTGEVLGRGQNGPITAHDPSAHAEIVALRDAA 56
Query: 65 EEARGA-----TAYVTLEPCSHY 82
+ + T YVTLEPC+
Sbjct: 57 AKLQNYRLTDLTLYVTLEPCAMC 79
>gi|212703407|ref|ZP_03311535.1| hypothetical protein DESPIG_01450 [Desulfovibrio piger ATCC
29098]
gi|212673152|gb|EEB33635.1| hypothetical protein DESPIG_01450 [Desulfovibrio piger ATCC
29098]
Length = 144
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R V ++V DG ++ R HAE+ AL AG
Sbjct: 1 MRLALDEARQAAREDEV--PVGAVLVAADGRLLARAHNRPVALHDPTAHAEILALRAAGA 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G VTLEPC+
Sbjct: 59 ASGNYRLGGGVLVVTLEPCAMC 80
>gi|171682182|ref|XP_001906034.1| hypothetical protein [Podospora anserina S mat+]
gi|170941050|emb|CAP66700.1| unnamed protein product [Podospora anserina S mat+]
Length = 167
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALE 61
+ +M AL ++ TN V +IV ++ G T G HAE L
Sbjct: 7 ADHKGYMQLALEQAKKSPPK-PTNYRVGAVIVDTASNEILATGYTLELPGNTHAEQCCLL 65
Query: 62 EAGEE------------ARGATAYVTLEPC 79
+ E+ Y T+EPC
Sbjct: 66 KLAEKHGVSEENLGDVLPTNLALYTTVEPC 95
>gi|282859465|ref|ZP_06268570.1| guanine deaminase [Prevotella bivia JCVIHMP010]
gi|282587693|gb|EFB92893.1| guanine deaminase [Prevotella bivia JCVIHMP010]
Length = 168
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A+ S R G +I ++G ++ G HAEV
Sbjct: 17 EELMRRAIELSINSVRNGGG------PFGAVIARNGEIVAEGSNKVTIDNDPTAHAEVST 70
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ A ++ G Y + EPC
Sbjct: 71 IRMACKKLDSFDLSGCEIYTSCEPCPMC 98
>gi|225630106|ref|YP_002726897.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
sp. wRi]
gi|225592087|gb|ACN95106.1| cytidine and deoxycytidylate deaminase family protein [Wolbachia
sp. wRi]
Length = 135
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA--GEEA 67
M A+ ++ + + +IV +I + HAE+ A+ +A
Sbjct: 1 MELAIEQAKLAQ--KNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTSTL 58
Query: 68 RGATAYVTLEPCSHY 82
YVTLEPC
Sbjct: 59 CDTDMYVTLEPCPMC 73
>gi|284054867|ref|ZP_06385077.1| tRNA-adenosine deaminase [Arthrospira platensis str. Paraca]
Length = 87
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQA 59
+ + +M AL+ G P V LIV G +I +G HAE+ A
Sbjct: 6 TTHSHWMQQALKLGA-AAGEAGEVP-VGALIVNQQGKLIAQGENRRERDPDPTAHAEIIA 63
Query: 60 LEEAGE-----EARGATAYVTLEP 78
L +A + T YVTLEP
Sbjct: 64 LRQASQILGDWHLNTCTLYVTLEP 87
>gi|219110369|ref|XP_002176936.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411471|gb|EEC51399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 172
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 28/128 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM+ A ++ N V IV + ++ G +
Sbjct: 7 SWDDYFMAMAFLTAQRSK---DPNTQVGACIVDRHQRIVALGYNGFPAGASDDVLPWSRT 63
Query: 54 -------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAEV A L + + + T YV L PC+ + A +
Sbjct: 64 AVQPLHRKYHYVCHAEVNAVLNKCSDNVKDTTLYVALFPCNECAKVLVQAGVKEVVYMSD 123
Query: 100 VVVCVDDP 107
+ D
Sbjct: 124 IYHDTDSC 131
>gi|319425606|gb|ADV53680.1| Cytosine deaminase [Shewanella putrefaciens 200]
Length = 145
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGNIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + AT Y TL PC
Sbjct: 58 NAGRLSAADYQKATLYSTLSPCDMCS 83
>gi|115398407|ref|XP_001214795.1| deoxycytidylate deaminase [Aspergillus terreus NIH2624]
gi|114192986|gb|EAU34686.1| deoxycytidylate deaminase [Aspergillus terreus NIH2624]
Length = 259
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-----TAYG----GCP-- 53
++D FM A + + V C++V+D VI G GCP
Sbjct: 81 NWDQYFMQLASLAALRSNCMKR---RVGCVLVRDHRVISTGYNGTPRHLKNCNEGGCPRC 137
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 138 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCLTC 184
>gi|296446869|ref|ZP_06888806.1| bifunctional deaminase-reductase domain protein [Methylosinus
trichosporium OB3b]
gi|296255640|gb|EFH02730.1| bifunctional deaminase-reductase domain protein [Methylosinus
trichosporium OB3b]
Length = 252
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R + ++ S D I S I+G + + +H +RA DA++VG T++ DDP+L
Sbjct: 29 ERPFVVGQVGQSLDGRIATLCGESRDISGQAALDHLHRIRAHVDAVIVGARTIVLDDPQL 88
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
+ R +P R+++DP +L + + +++ E + +
Sbjct: 89 SVRRVP--GTNPARVVIDPSGRLDSRGRWLADDGARRILVTGERSSVSCGAETIRLESHA 146
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
++ L RG+ +LVEGGA +F+ + +D + + + ++IG G
Sbjct: 147 GIIP---PAAIVEALFSRGLKRILVEGGARTLSTFLETGHLDRLHVLVAPMIIGSGQAGL 203
Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCL 352
P+ + G DV
Sbjct: 204 DLPPIAKLESALRPRVRAHLLEGGDVLF 231
>gi|255954833|ref|XP_002568169.1| Pc21g11370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589880|emb|CAP96034.1| Pc21g11370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 331
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++V++ VI G GGCP
Sbjct: 190 NWDQYFMQLASLAAQRSNCMKR---RVGCVLVRESRVISTGYNGTPRHLQNCNQGGCPRC 246
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 247 NRGDGGGAGLSTCLCLHAEENALLEAGRERIREGAILYCDTCPCLTC 293
>gi|149013222|ref|ZP_01834008.1| transcriptional regulator, TetR family protein [Streptococcus
pneumoniae SP19-BS75]
gi|147762973|gb|EDK69918.1| transcriptional regulator, TetR family protein [Streptococcus
pneumoniae SP19-BS75]
Length = 346
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
++D F + AL + + V ++VKD VI G + G
Sbjct: 198 AWDEYFAAQALLIANRSTCKRAK---VGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 254
Query: 52 ------CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 255 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 293
>gi|323348302|gb|EGA82551.1| Dcd1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 272
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 122 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 178
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 179 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 224
>gi|163782963|ref|ZP_02177958.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
gi|159881643|gb|EDP75152.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1]
Length = 223
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 13/223 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+E+R ++ + VS D + + + + + +H +RA+ D I+VG TV
Sbjct: 1 MMEQRPYVIIVSEVSIDGKLTLYRGASSKELMSLMDEEAYRYLHEIRAKVDGIMVGCETV 60
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D+P LT R +P RII + LD+ ++ T +I TE D
Sbjct: 61 RTDNPSLTVRYVK--GKNPTRIIPCSTANVPLDANVLNTEDAPTIIATTERADKERVKKI 118
Query: 261 RKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+K ++ + D LL L G+ +L+VEGGA++ F+ + VD I L +
Sbjct: 119 EEKGAKVVVAGDELVDFDLLLPKLYEMGIKTLMVEGGASINWEFVRRKKVDEIRLIHLPV 178
Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356
++G +P+ + +K + G+ + E+
Sbjct: 179 IVGGENVPTLVGGEGFKKLKDILHLRLRSHFKRGNQLITEWEV 221
>gi|322385723|ref|ZP_08059367.1| competence protein comEB [Streptococcus cristatus ATCC 51100]
gi|321270461|gb|EFX53377.1| competence protein comEB [Streptococcus cristatus ATCC 51100]
Length = 156
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 8 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 64
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 65 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 103
>gi|264677007|ref|YP_003276913.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
gi|262207519|gb|ACY31617.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
Length = 164
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 3 VSSFD-ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+S D +++ ++R + G S ++V+DG V+ R V HAE
Sbjct: 1 MSKQDSEKYLLESIRLAMGNVKGRESATWPFGAVLVRDGKVLARAVNQVDDLCDPTAHAE 60
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+QAL A + + GA Y + PCS
Sbjct: 61 MQALRIAAKALGSTDLSGAVMYASGYPCSMCH 92
>gi|119356459|ref|YP_911103.1| tRNA-adenosine deaminase [Chlorobium phaeobacteroides DSM 266]
gi|119353808|gb|ABL64679.1| tRNA-adenosine deaminase [Chlorobium phaeobacteroides DSM 266]
Length = 153
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHA 55
M + +M+ A + + V V ++ +G ++G+G HA
Sbjct: 1 MNFT----HYMAIAFKEALKAVEK--KEVPVGAVVFDSNGNIVGKGYNQVEELSDATAHA 54
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ AL A + T VT+EPC
Sbjct: 55 EMIALTSAMATLNTKYLDDCTIAVTMEPCPMC 86
>gi|260655489|ref|ZP_05860977.1| deoxycytidylate deaminase [Jonquetella anthropi E3_33 E1]
gi|260629937|gb|EEX48131.1| deoxycytidylate deaminase [Jonquetella anthropi E3_33 E1]
Length = 180
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 32/109 (29%), Gaps = 33/109 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D+ FM AL + T V +IV+ G VI G G P
Sbjct: 7 DWDSYFMMLALVAATRS---TCLRRRVGAVIVRHGQVISTGYNGAPRGTPHCSETGCLRA 63
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
HAE+ A+ A G Y T PC
Sbjct: 64 QLGIPSGQKHELCRGSHAEMNAIALAASQGVVTDDGELYCTHSPCVFCS 112
>gi|299141289|ref|ZP_07034426.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
oris C735]
gi|298577249|gb|EFI49118.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
oris C735]
Length = 148
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
M + D ++M AL + +IV +I R + HA
Sbjct: 1 MKETDNKDEQYMRKALY--EAERAAEEGEIPIGAVIVCKDRIISRAHNLTEKLHDVTAHA 58
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+QA+ A G+ T YVT+EPC
Sbjct: 59 EMQAITSAADLLGGKYLSDCTLYVTVEPCVMC 90
>gi|108759248|ref|YP_632223.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Myxococcus xanthus DK 1622]
gi|108463128|gb|ABF88313.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Myxococcus xanthus DK 1622]
Length = 150
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 25/98 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
S+D FM A + + T V +IV+ ++ G
Sbjct: 6 SWDQYFMDIATQVASRA---TCDRKHVGAVIVRGRTILSTGYNGAIRGLPHCDDVGHMME 62
Query: 50 GG----CPHAEVQALEEA---GEEARGATAYVTLEPCS 80
G HAE A+ +A G GAT Y T PC
Sbjct: 63 NGHCVATVHAEANAIIQAATNGVSIDGATIYTTASPCW 100
>gi|299143513|ref|ZP_07036593.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
sp. oral taxon 386 str. F0131]
gi|298517998|gb|EFI41737.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
sp. oral taxon 386 str. F0131]
Length = 153
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + F FM+ AL+ ++ + +IV + +IGRG HAE
Sbjct: 1 MNRNDF---FMNEALKLAKISYDNGDI--PIGAIIVFNDEIIGRGFNKKELLKDASAHAE 55
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A++EA + T YVTLEPC+
Sbjct: 56 LIAMKEASKFLNSYHLEDCTMYVTLEPCAMC 86
>gi|157363614|ref|YP_001470381.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
gi|157314218|gb|ABV33317.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
Length = 186
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----------- 50
+D FM T T+ V +IV++ ++ G
Sbjct: 30 SRIPWDEYFMRICYIVKERS---TCTHRKVGAVIVRENRILATGYNQPPSAFPHCDSTGC 86
Query: 51 ---------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE AL +A G GAT YVT +PCS
Sbjct: 87 IRDHLRIPSGQNQEICYALHAEQNALMQAAKFGISTNGATMYVTTKPCSVC 137
>gi|311085993|gb|ADP66075.1| hypothetical protein CWO_01335 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
Length = 130
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M AL+++ G + ++V +IG G + H
Sbjct: 1 MKY-EKDKNWMKIALKYAYYAKEKGEI----PIGAILVFKERIIGIGWNSSISKNDPTAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ AL AG++ + T YVTL+PC
Sbjct: 56 AEIIALRGAGKKIKNYRLLNTTLYVTLQPCIMC 88
>gi|270292326|ref|ZP_06198537.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. M143]
gi|270278305|gb|EFA24151.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. M143]
Length = 155
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAEV A+ + E +G TAYVT PC + + I + +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNCTKQLLQVGCKRVVYINQYRMD 123
Query: 104 VDDPDVRVSG 113
+
Sbjct: 124 DYAQYLYHEK 133
>gi|302529650|ref|ZP_07281992.1| guanine deaminase [Streptomyces sp. AA4]
gi|302438545|gb|EFL10361.1| guanine deaminase [Streptomyces sp. AA4]
Length = 162
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 1 MPVS---SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M VS + +++ +R + +V L+VKDG ++ GV
Sbjct: 1 MTVSIDADVERAWLAECVRIAEKNVADGGG--PFGALVVKDGEIVATGVNRVTPSLDPTA 58
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV A+ A + G + EPC
Sbjct: 59 HAEVVAIRAACQALGTFSLAGCVLVSSCEPCPMC 92
>gi|19705207|ref|NP_602702.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296329061|ref|ZP_06871566.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713154|gb|AAL94001.1| Deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296153780|gb|EFG94593.1| deoxycytidylate deaminase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 174
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 20 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWQRD 76
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + YV L PC
Sbjct: 77 GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHEC 117
>gi|296128347|ref|YP_003635597.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas flavigena DSM
20109]
gi|296020162|gb|ADG73398.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas flavigena DSM
20109]
Length = 176
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQ 58
+ D M AL +R + S + V +++ DG V+GRG HAEV
Sbjct: 27 TPADEAAMDLALVEARAALD--SGDVPVGAVVLGPDGAVVGRGRNVREAVADPTGHAEVV 84
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ EA G T VTLEPC
Sbjct: 85 AMREAAATLGRWRLDGCTLVVTLEPCLMC 113
>gi|145603432|ref|XP_001404560.1| hypothetical protein MGG_13228 [Magnaporthe oryzae 70-15]
gi|145011664|gb|EDJ96320.1| hypothetical protein MGG_13228 [Magnaporthe oryzae 70-15]
Length = 180
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 29/99 (29%)
Query: 7 DARFMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRG--------VTAYGGCP 53
FM A+ +R +P V ++V + G V+ RG G
Sbjct: 15 HEEFMKLAIEEARRSR----PDPGKFCVGAVLVNEDTGDVLSRGYYLEYPEDYNGSNGSV 70
Query: 54 HAEVQALEEAGE------------EARGATAYVTLEPCS 80
HAE L +A E Y T+EPC+
Sbjct: 71 HAERVCLIKAAELYGVSETELGAALPPNCAIYTTMEPCN 109
>gi|255540237|ref|XP_002511183.1| deoxycytidylate deaminase, putative [Ricinus communis]
gi|223550298|gb|EEF51785.1| deoxycytidylate deaminase, putative [Ricinus communis]
Length = 224
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 33/156 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++G+++G G
Sbjct: 63 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 119
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 120 SKTGNPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYF 179
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+ + + LS GI V R
Sbjct: 180 VEKNLSNSETAYIA---SHKLLSMAGIKVRRHQPQM 212
>gi|255728969|ref|XP_002549410.1| deoxycytidylate deaminase [Candida tropicalis MYA-3404]
gi|240133726|gb|EER33282.1| deoxycytidylate deaminase [Candida tropicalis MYA-3404]
Length = 339
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C+IV++ VI G G P
Sbjct: 189 TWDSYFMRLADLAALRSNCMKR---RVGCVIVRENRVIATGY---NGTPRHLTNCNDGGC 242
Query: 54 -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG + RG + Y PC
Sbjct: 243 SRCNKGQGSGASLSTCLCLHAEENALLEAGRDRIRGESVLYCNTCPCLTCS 293
>gi|237798885|ref|ZP_04587346.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021739|gb|EGI01796.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 145
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA ++ + +IV DG +IGRG H E+ ALE AG
Sbjct: 4 FMRAAFEEAQHGQEEGGI--PIGSVIVHDGKIIGRGRNRRVQNASATLHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYREAVLYTTLSPCAMCS 83
>gi|262042008|ref|ZP_06015188.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040626|gb|EEW41717.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 152
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAEVQ 58
+S+ D R++ AL ++ ++ ++V++ ++ + HAE+
Sbjct: 1 MSAHD-RYLQRALVLAKQNIADGGR--PFGAVLVRNDEIVAESVNTFHLSGEPTAHAELN 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ + R Y + +PC
Sbjct: 58 AVRDLAARLGSAVLRECVIYASGQPCPMC 86
>gi|153832876|ref|ZP_01985543.1| deoxycytidylate deaminase [Vibrio harveyi HY01]
gi|148870799|gb|EDL69698.1| deoxycytidylate deaminase [Vibrio harveyi HY01]
Length = 152
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S ++ RF A + W + V +I K+ ++ G Y G
Sbjct: 2 ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKNNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGIARVSCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 118 SRWGDKIQVSQDMFDQAGVEVNW 140
>gi|189499637|ref|YP_001959107.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
gi|189495078|gb|ACE03626.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
Length = 156
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
M +S FM A R + P V ++ +G +IGRG HA
Sbjct: 1 MNLS----YFMEPAFREAIKA-YEKKEVP-VGAVVFDANGHIIGRGYNQVEALTDATAHA 54
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ AL A + T VTLEPC
Sbjct: 55 EMIALTSAMATLGSKYLSDCTLAVTLEPCPMC 86
>gi|153005122|ref|YP_001379447.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5]
gi|152028695|gb|ABS26463.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5]
Length = 164
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 25/98 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+D FM+ A + T V ++V+D ++ G + G P
Sbjct: 6 SWDEYFMNVARVVASRA---TCDRKHVGAVLVRDKTILSTGYNGSIRGLPHCSEAGHMME 62
Query: 54 --------HAEVQALEEAGEE---ARGATAYVTLEPCS 80
HAE A+ +A + GAT Y T PC
Sbjct: 63 DGHCVATVHAEANAIIQAAKNGVAIDGATIYTTASPCW 100
>gi|260907065|ref|ZP_05915387.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Brevibacterium
linens BL2]
Length = 473
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 14/207 (6%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
A S+D I + + ++G I + +H +RA A+LVG GTV+ADDP LT R +
Sbjct: 250 AQSEDGFIATSDGDAQFVSGQIDRAHLHRIRASVGAVLVGCGTVIADDPRLTVR--AVPG 307
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+P+R++LDPH ++ + ++ + + ++ P + + + + D+
Sbjct: 308 ENPVRVVLDPHGRVPTTATVLTSPESPTLWLIGAEVAPSSDVGDHVSVVRLPAAEGDDIP 367
Query: 277 KLLTILVGRGV--TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SP 328
+ + R S+LVEGG SF+ + ++D + L + + IG G+P +P
Sbjct: 368 PARIVSLIREYVAGSILVEGGGRTVSSFLAAGVLDRLFLTSAPVFIG-NGVPGIRFEGTP 426
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ L + F R FG D+C EY+
Sbjct: 427 VMAEALRRPFR---RYQFGEDMCTEYL 450
>gi|297559747|ref|YP_003678721.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844195|gb|ADH66215.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 156
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
DAR++ + S + T SV C ++ DG V+G G + HAE AL E
Sbjct: 11 ESDARWLRRTVELS-RSCPPSDTAFSVGCAVVAADGTVLGEGYSRRDDPHDHAEEAALRE 69
Query: 63 AGE---EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
GAT Y +LEPCS R C+ I+ + RVV +P V V G +
Sbjct: 70 VDADDPRLAGATLYSSLEPCSSRASRPLSCSALILATPVARVVFAWREPSVFVDCDGAER 129
Query: 119 LSQKGIIV 126
L G V
Sbjct: 130 LRAAGRTV 137
>gi|229820162|ref|YP_002881688.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
gi|229566075|gb|ACQ79926.1| CMP/dCMP deaminase zinc-binding [Beutenbergia cavernae DSM 12333]
Length = 163
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-----DGIVIGRGVTA----YGG 51
MP SS D+ F++ A+ + +V LIV+ V+ G +
Sbjct: 1 MPESSRDSAFLALAVDLATANVADGGG--PFGALIVRSDAQPGDHVVATGTNRVTRDHDA 58
Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAEV+A+ AG G T Y + EPC
Sbjct: 59 TAHAEVEAIRAAGRAVGSHALTGMTLYASCEPCPLC 94
>gi|123448020|ref|XP_001312744.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Trichomonas vaginalis G3]
gi|121894602|gb|EAX99814.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Trichomonas vaginalis G3]
Length = 171
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQ 58
++M AL+ + G + V C+I+ +G VI G HAE+
Sbjct: 16 EMHEKYMQLALKAADDAFDAGEVA----VGCVIIHNGQVIASGGNQTNAKNDATRHAELV 71
Query: 59 ALEEAGEE-------ARGATAYVTLEPCSHYGRSPPCA 89
+ E + +T YVT EPC +
Sbjct: 72 TFKHLKESRSDYKQILKESTLYVTCEPCIMCASAIKMM 109
>gi|88608086|ref|YP_505986.1| cytidine/deoxycytidylate deaminase family protein [Neorickettsia
sennetsu str. Miyayama]
gi|88600255|gb|ABD45723.1| cytidine/deoxycytidylate deaminase family protein [Neorickettsia
sennetsu str. Miyayama]
Length = 144
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61
D +FM A+ +R V ++V+ G VI HAE+ +
Sbjct: 1 MDKKFMELAMSVARQSDCEV----PVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMFVIR 56
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
EA + YVTLEPC
Sbjct: 57 EAIQRLGVKFLVDFELYVTLEPCPMC 82
>gi|310793981|gb|EFQ29442.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 398
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
FM AL +R + T+ P V C++V +G VI RG+ A G HAE A
Sbjct: 79 PMHQAFMGQALDMARLAL-RTNETP-VGCVLVYNGSVIARGMNATNVTRNGTRHAEFMA 135
>gi|306825613|ref|ZP_07458952.1| cytidine and deoxycytidylate deaminase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315612824|ref|ZP_07887735.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
ATCC 49296]
gi|304431974|gb|EFM34951.1| cytidine and deoxycytidylate deaminase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315314934|gb|EFU62975.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
ATCC 49296]
Length = 155
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAEV A+ + E RG TAYVT PC + + I + +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPRGFTAYVTHFPCLNCTKQLLQVGCKRVVYINQYRMD 123
Query: 104 VDDPDVRVSG 113
+
Sbjct: 124 DYAQYLYHEK 133
>gi|229046739|ref|ZP_04192382.1| Cytosine deaminase [Bacillus cereus AH676]
gi|229110499|ref|ZP_04240069.1| Cytosine deaminase [Bacillus cereus Rock1-15]
gi|229128373|ref|ZP_04257354.1| Cytosine deaminase [Bacillus cereus BDRD-Cer4]
gi|228655232|gb|EEL11089.1| Cytosine deaminase [Bacillus cereus BDRD-Cer4]
gi|228672983|gb|EEL28257.1| Cytosine deaminase [Bacillus cereus Rock1-15]
gi|228724557|gb|EEL75871.1| Cytosine deaminase [Bacillus cereus AH676]
Length = 158
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 13 AALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
AL + + T V +IV + VI RG HAE+ A+ AGE
Sbjct: 1 MALEEAEKALKENTYP---VGAVIVDGNNNVIARGRNRVHPEKDITAHAELDAIRNAGEA 57
Query: 67 ARGA-------TAYVTLEPCSHY 82
A T Y TLEPC
Sbjct: 58 MFDAKIKNERFTIYSTLEPCPMC 80
>gi|66047004|ref|YP_236845.1| cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
gi|289676943|ref|ZP_06497833.1| cytosine deaminase [Pseudomonas syringae pv. syringae FF5]
gi|302187712|ref|ZP_07264385.1| cytosine deaminase [Pseudomonas syringae pv. syringae 642]
gi|63257711|gb|AAY38807.1| Cytosine deaminase [Pseudomonas syringae pv. syringae B728a]
gi|330977861|gb|EGH77764.1| cytosine deaminase [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 145
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAFDEAQLGLKEGGI--PIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R + Y TL PC+
Sbjct: 62 QPASVYRDSVLYTTLSPCAMCS 83
>gi|307152204|ref|YP_003887588.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
gi|306982432|gb|ADN14313.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
Length = 162
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
++MS A+ ++ G V +I+ ++G +I HAE+
Sbjct: 16 HQQWMSRAIVLAQQAALAGDV----PVGAVILDREGRLIAEASNRKERDQDPTAHAEILV 71
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
L A + + YVTLEPC
Sbjct: 72 LRRASQILKTWHLEACYLYVTLEPCPMC 99
>gi|120435954|ref|YP_861640.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
gi|117578104|emb|CAL66573.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
Length = 149
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + + MS A+ +R + + P +I K +I HAE
Sbjct: 1 MKIKDLQKKMMSRAIDLAREGRDMDNGGP-FGAVITKGDEIIAESCNKVLAKEDCTEHAE 59
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
++A+++A + G + + EPC
Sbjct: 60 LRAIQKACRKLNSSSLQGCVLFTSCEPCMMC 90
>gi|148269654|ref|YP_001244114.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
gi|170288329|ref|YP_001738567.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
gi|281411636|ref|YP_003345715.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
RKU-10]
gi|147735198|gb|ABQ46538.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1]
gi|170175832|gb|ACB08884.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2]
gi|281372739|gb|ADA66301.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila
RKU-10]
Length = 169
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D+ FM A S T + V +IVKD ++ G
Sbjct: 23 SWDSYFMRIARMVSERS---TCVHRKVGAVIVKDHRILATGYNQPPSKFPHCNEIGCIRD 79
Query: 51 ------GCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE AL +A G GAT YVT +PCS
Sbjct: 80 DLEINSGEHQEICYALHAEQNALMQAAKFGIAVNGATIYVTHKPCSIC 127
>gi|289426038|ref|ZP_06427785.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK187]
gi|289427970|ref|ZP_06429674.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J165]
gi|295131701|ref|YP_003582364.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK137]
gi|289153581|gb|EFD02295.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK187]
gi|289158853|gb|EFD07053.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J165]
gi|291375889|gb|ADD99743.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK137]
Length = 160
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R T + + +I+ +G V+ HAEV A+ A
Sbjct: 12 MTQALDVARRAA--TWGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 69
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 70 ARDGWRLGDCTLVVTLEPCTMC 91
>gi|284047807|ref|YP_003398146.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
DSM 20731]
gi|283952028|gb|ADB46831.1| CMP/dCMP deaminase zinc-binding protein [Acidaminococcus fermentans
DSM 20731]
Length = 150
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 33/113 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M +D+ FM A S+ L V ++VKD ++ G
Sbjct: 1 MERPDWDSYFMEIAEVVSKRSTCLRRK---VGAVLVKDRQILATGYNGTPKGLPHCEQVG 57
Query: 47 ------TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYG 83
G HAE A+ +A G GAT Y T +PC
Sbjct: 58 CLREKLHVPSGQNHELCRGIHAEQNAVIQAAVNGVSTLGATLYCTHQPCVVCS 110
>gi|218245366|ref|YP_002370737.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
gi|257058401|ref|YP_003136289.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
gi|218165844|gb|ACK64581.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
gi|256588567|gb|ACU99453.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8802]
Length = 139
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE- 65
M AA+ ++ + + ++VK +IG+G G P HAE+ L AG
Sbjct: 1 MKAAIAEAKQGLQEGGI--PIGSVLVKGDQIIGKGHNKRVQDGDPVTHAEIDCLRNAGRI 58
Query: 66 -EARGATAYVTLEPCSHY 82
+ Y TL PC
Sbjct: 59 GNYQDTVLYSTLMPCYLC 76
>gi|149278879|ref|ZP_01885014.1| cytidine/deoxycytidylate deaminase family protein [Pedobacter sp.
BAL39]
gi|149230498|gb|EDM35882.1| cytidine/deoxycytidylate deaminase family protein [Pedobacter sp.
BAL39]
Length = 168
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
A FM A+ S +V ++ IVK+G +I + HAEV A+
Sbjct: 12 EQHAAFMKIAIDASEENV-ISGKGTPFGAAIVKEGQLIAKSANKVTADNDPTAHAEVAAI 70
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A + + G Y + EPC
Sbjct: 71 RIACQELNTYDLTGCVIYTSCEPCPMC 97
>gi|17541138|ref|NP_502546.1| hypothetical protein JC8.4 [Caenorhabditis elegans]
gi|6425182|emb|CAB05231.1| C. elegans protein JC8.4, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 176
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEV 57
+S+ D F+ A ++ + V C+ V +G IGRG G P HAE+
Sbjct: 5 ELSAEDTAFLEKAFELAQEALDE--DEVPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEM 62
Query: 58 QALEE--------AGEEARGATAYVTLEPCSHYG 83
A+ E + + +T YV+LEPC
Sbjct: 63 VAVTEMWKEHGTGCEDLLKKSTLYVSLEPCIMCS 96
>gi|310826939|ref|YP_003959296.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
gi|308738673|gb|ADO36333.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612]
Length = 159
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM AL ++ V IV D ++ G
Sbjct: 8 SWDEYFMGIALLAAKRSK---DPGTQVGACIVSPDNKILTMGYNGMPTGCHDDNMPWERE 64
Query: 51 GCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE A+ G +GAT Y TL PC+
Sbjct: 65 GDPLETKYLYVCHAEFNAILNNGGRSLKGATLYATLFPCNEC 106
>gi|255625685|gb|ACU13187.1| unknown [Glycine max]
Length = 186
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
D +F+ A+ + V +IV + ++ R HAEV + +
Sbjct: 31 DHKFLRIAVEEAYKGV-DCEDGGPFGAIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRK 89
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A E+ Y + EPC
Sbjct: 90 ACEKLNQIELSDCEIYASCEPCPMC 114
>gi|240281302|gb|EER44805.1| tRNA specific adenosine deaminase [Ajellomyces capsulatus H143]
Length = 197
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
FM AL + G T V C++V + G G+ + G HAE A+
Sbjct: 17 HEYFMKKALDMGEEALASGET----PVGCVLVHNDEATGSGMNDTNKSMNGTRHAEFLAI 72
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EE R YVT+EPC
Sbjct: 73 EEVLRNYPRSIFRETDLYVTVEPCIMC 99
>gi|239978013|ref|ZP_04700537.1| deaminase [Streptomyces albus J1074]
gi|291449917|ref|ZP_06589307.1| deaminase [Streptomyces albus J1074]
gi|291352866|gb|EFE79768.1| deaminase [Streptomyces albus J1074]
Length = 168
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 5 SFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+ + +M A+ + R G LI KDG+V+ G HAE
Sbjct: 13 ALERAWMEQAISLATDSARSGGG------PFGALIAKDGLVVATGHNQVTASLDPSAHAE 66
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V A+ A +E G + EPC
Sbjct: 67 VSAIRAACKELNTFSLAGCVLITSCEPCPMC 97
>gi|119775487|ref|YP_928227.1| cytidine/deoxycytidylate deaminase family protein [Shewanella
amazonensis SB2B]
gi|119767987|gb|ABM00558.1| tRNA-adenosine deaminase [Shewanella amazonensis SB2B]
Length = 190
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 1 MPV--SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----C 52
M + + D FMS AL ++ G V ++V++G+VI G G
Sbjct: 19 MTLQQTELDKHFMSLALEAAKEAEARGEV----PVGAVLVREGLVIATGYNHNIGLNDPS 74
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+Q L EAG T YVTLEPC+
Sbjct: 75 AHAEMQCLREAGRMLGNYRLLDTTLYVTLEPCAMC 109
>gi|322696336|gb|EFY88130.1| CMP/dCMP deaminase, zinc-binding protein [Metarhizium acridum CQMa
102]
Length = 474
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ RF+ AL +R + T+ P V C++V +G VI +G+ A G HAE A+
Sbjct: 151 AHHLRFIEEALDMARLAL-RTNETP-VGCVLVHNGTVIAKGMNATNVTRNGTRHAEFMAI 208
>gi|229179327|ref|ZP_04306681.1| Cytosine deaminase [Bacillus cereus 172560W]
gi|228604225|gb|EEK61692.1| Cytosine deaminase [Bacillus cereus 172560W]
Length = 158
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 13 AALRFSRWHVGL-TSTNPSVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
AL + + T V +IV + VI RG HAE+ A+ AGE
Sbjct: 1 MALEEAEMALKENTYP---VGAVIVDGNNNVIARGRNRVHPQKDITAHAEIDAIRNAGEA 57
Query: 67 ARGA-------TAYVTLEPCSHY 82
A T Y TLEPC
Sbjct: 58 MFDAKIKNEKFTIYSTLEPCPMC 80
>gi|213969586|ref|ZP_03397722.1| cytosine deaminase [Pseudomonas syringae pv. tomato T1]
gi|301383360|ref|ZP_07231778.1| cytosine deaminase [Pseudomonas syringae pv. tomato Max13]
gi|302058808|ref|ZP_07250349.1| cytosine deaminase [Pseudomonas syringae pv. tomato K40]
gi|302134497|ref|ZP_07260487.1| cytosine deaminase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213925682|gb|EEB59241.1| cytosine deaminase [Pseudomonas syringae pv. tomato T1]
Length = 145
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAIDEAQLGLDEGGI--PIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYREAVLYTTLSPCAMCS 83
>gi|113477509|ref|YP_723570.1| tRNA-adenosine deaminase [Trichodesmium erythraeum IMS101]
gi|110168557|gb|ABG53097.1| tRNA-adenosine deaminase [Trichodesmium erythraeum IMS101]
Length = 156
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
++MS L ++ G P A ++ DG ++ HAE+ AL +
Sbjct: 10 HKKWMSRVLELAKTA-GDAGEVPVAAAVVNSDGKLVTEAQNRRERDFDPTGHAEILALRQ 68
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
AG+ + T YV LEPC
Sbjct: 69 AGQVLQNWHLNQCTLYVNLEPCPMC 93
>gi|163784431|ref|ZP_02179312.1| Cytosine/adenosine deaminase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880298|gb|EDP73921.1| Cytosine/adenosine deaminase [Hydrogenivirga sp. 128-5-R1-1]
Length = 146
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-- 68
+ ++ P V LIV++G +I +G HAE+ A+E+A ++ +
Sbjct: 10 IEEAKKA-YKKDEVP-VGALIVRNGEIISKGHNQRITKNNALYHAEIVAIEKACKKLKSW 67
Query: 69 ---GATAYVTLEPCSHY 82
+V+LEPC
Sbjct: 68 RLDDCEIWVSLEPCVMC 84
>gi|160901692|ref|YP_001567273.1| CMP/dCMP deaminase zinc-binding [Petrotoga mobilis SJ95]
gi|160359336|gb|ABX30950.1| CMP/dCMP deaminase zinc-binding [Petrotoga mobilis SJ95]
Length = 169
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
+D FM A S+ T + V +IVK+ ++ G G P
Sbjct: 24 KRKDWDKYFMEVADLVSKRS---TCLHRKVGAVIVKEKRILATGYNQPPSGFPHCDDIGC 80
Query: 54 -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G A+ Y+T +PCS
Sbjct: 81 IRDDLGIKSGENQEICYGLHAEQNALMQAAKFGISTDNASIYITHQPCSVC 131
>gi|311694828|gb|ADP97701.1| protein containing bacterial bifunctional deaminase-reductase,
C-terminal domain [marine bacterium HP15]
Length = 290
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+ ++ S D I S I G +H +RA SDA++VG GT D+P LT
Sbjct: 74 PKVIGQLGQSLDGRIATVTGRSRFINGDDGITHLHRIRAVSDAVVVGAGTATTDNPRLTV 133
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R +P+R+++D H ++ + + +V + + I
Sbjct: 134 RRTS--GRNPVRVVIDRHHRVPDSHHLFTDGEAPTLRLVAGTYEKAKNPSIGSGVTEIPC 191
Query: 270 ------CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
D D + +L +L G+ + VEGG F+N+ L+D + + + ++IG
Sbjct: 192 LGDAESEDAVDPRVILEVLADLGLKKVFVEGGGVTVSCFLNAGLLDRLHVMVAPMIIGS- 250
Query: 324 GIPSP------LEEGYLEKNFMCVRRDYFGSDVCLEY 354
G P+ + L + GSD+ +
Sbjct: 251 GRPAFSLPEIDFLDDALRPRAQLIN---LGSDMLFDL 284
>gi|281423636|ref|ZP_06254549.1| tRNA-specific adenosine deaminase [Prevotella oris F0302]
gi|281402188|gb|EFB33019.1| tRNA-specific adenosine deaminase [Prevotella oris F0302]
Length = 154
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55
M + D ++M AL + +IV +I R + HA
Sbjct: 7 MKETDNKDEQYMRKALY--EAERAAEEGEIPIGAVIVCKDRIISRAHNLTEKLHDVTAHA 64
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+QA+ A G+ T YVT+EPC
Sbjct: 65 EMQAITSAADLLGGKYLSDCTLYVTVEPCVMC 96
>gi|326328640|ref|ZP_08194980.1| cytidine and deoxycytidylate deaminase family protein
[Nocardioidaceae bacterium Broad-1]
gi|325953601|gb|EGD45601.1| cytidine and deoxycytidylate deaminase family protein
[Nocardioidaceae bacterium Broad-1]
Length = 165
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRF--SRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AAL + G + ++V G VIGRG HAEV AL EA
Sbjct: 11 MRAALEEGRAALATGDV----PIGAVVVDPSGAVIGRGRNVREAEADPTGHAEVVALREA 66
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G T VTLEPC+
Sbjct: 67 AKARGEWRLEGCTLVVTLEPCTMC 90
>gi|156387791|ref|XP_001634386.1| predicted protein [Nematostella vectensis]
gi|156221468|gb|EDO42323.1| predicted protein [Nematostella vectensis]
Length = 156
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
+F+ A++ S+ +I KD +I HAEV A+ +A
Sbjct: 7 QFLERAVQLSKEGSSQ-GLGMPFGAVIAKDNKIIAETANLSFVNCDPTAHAEVSAIRQAC 65
Query: 65 -----EEARGATAYVTLEPCSHY 82
+ G Y + PC+
Sbjct: 66 SALKSRDLTGCDLYTSCYPCAMC 88
>gi|227509717|ref|ZP_03939766.1| guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190641|gb|EEI70708.1| guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 160
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M + D FMS A + + ++ T +I ++ HAE
Sbjct: 1 MENINIDQ-FMSLAAKEAENNL-RTGDGGPFGAVIANGQDILVTAHNQVLKDQDPTAHAE 58
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
+ A+ +A ++ G T Y + PC
Sbjct: 59 ITAIRKATKKLGSYDLSGYTLYTSCYPCPMC 89
>gi|239820133|ref|YP_002947318.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
gi|239804986|gb|ACS22052.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
Length = 158
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 3 VSSFD---ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55
+S D ++M A+R + +V T P ++V++G V+ R V HA
Sbjct: 1 MSQPDPNAEKYMLDAIRLAMRNVRERRTWP-FGAVLVREGKVLARAVNEVDALCDPTAHA 59
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+QA+ A G + G+ Y + PC
Sbjct: 60 EMQAVRMAAKAQGGTDLSGSVVYASGYPCPMC 91
>gi|332162680|ref|YP_004299257.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666910|gb|ADZ43554.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860305|emb|CBX70619.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica W22703]
Length = 196
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V D VIG G HAE+ AL + G+ AT YVTLEPC
Sbjct: 53 PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCV 112
Query: 81 HY 82
Sbjct: 113 MC 114
>gi|50312303|ref|XP_456184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645320|emb|CAG98892.1| KLLA0F24794p [Kluyveromyces lactis]
Length = 597
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
+FM A+ + + G T T +V L+V ++ G + G HAE AL++
Sbjct: 445 HRKFMELAIDEA-RNCGETQTAFNVGALLVNGTDILSTGYSRELPGNTHAEQCALDKYFT 503
Query: 66 EARGATA------YVTLEPC 79
++ GA Y T+EPC
Sbjct: 504 KSEGAKLPDGTIIYTTMEPC 523
>gi|260909908|ref|ZP_05916596.1| guanine deaminase [Prevotella sp. oral taxon 472 str. F0295]
gi|260635953|gb|EEX53955.1| guanine deaminase [Prevotella sp. oral taxon 472 str. F0295]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M A+ S V +I ++G ++ + HAEV A+ A +
Sbjct: 7 MRRAIALSEESVKNGGG--PFGAVIARNGEIVAEAANRVTLDHDPTAHAEVSAIRLASRK 64
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 65 LGTFNLSGCDIYTSCEPCPMC 85
>gi|227512166|ref|ZP_03942215.1| competence protein ComEB [Lactobacillus buchneri ATCC 11577]
gi|227084560|gb|EEI19872.1| competence protein ComEB [Lactobacillus buchneri ATCC 11577]
Length = 167
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
+D FM A+ + T SV +IV+D +I G + G
Sbjct: 15 KWDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVAGDDHCIDVGCYLV 71
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + GE A YVT PC +
Sbjct: 72 DGHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQCTKM 114
>gi|239930296|ref|ZP_04687249.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
14672]
gi|291438644|ref|ZP_06578034.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
14672]
gi|291341539|gb|EFE68495.1| cytidine/deoxycytidine deaminase [Streptomyces ghanaensis ATCC
14672]
Length = 161
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + V + V +++ DG V+ RG HAEV A+ A
Sbjct: 19 MRLALDEAERAV--RGGDVPVGAVVLAPDGTTVLARGHNEREAAGDPTAHAEVLAVRRAA 76
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 77 AELGQWRLAGCTLVVTLEPCTMC 99
>gi|297819466|ref|XP_002877616.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297323454|gb|EFH53875.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 232
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 33/166 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++G+++G G
Sbjct: 67 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIILQSGVAEVIYF 183
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ D + LS + V + +I +
Sbjct: 184 VEKRLNDSDV---AYVASHKLLSMANVKVRKHQPEMDQILIKFEEH 226
>gi|52841949|ref|YP_095748.1| deaminase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52629060|gb|AAU27801.1| deaminase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 141
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFS--RWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEA 63
M A + + G V ++V KD ++G G ++ HAE++A+ +A
Sbjct: 1 MQLAYEQAVIARNEGEV----PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQA 56
Query: 64 GEEARG-----ATAYVTLEPCSHY 82
+ T YVTLEPC
Sbjct: 57 SRKLNNHRLLDTTLYVTLEPCVMC 80
>gi|303228977|ref|ZP_07315787.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella atypica ACS-134-V-Col7a]
gi|302516391|gb|EFL58323.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella atypica ACS-134-V-Col7a]
Length = 159
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|227529052|ref|ZP_03959101.1| competence protein ComEB [Lactobacillus vaginalis ATCC 49540]
gi|227351064|gb|EEJ41355.1| competence protein ComEB [Lactobacillus vaginalis ATCC 49540]
Length = 161
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A + T SV ++V+D +I G
Sbjct: 3 KRIDWDQYFMIQAALLASRS---TCNRLSVGAVLVRDKRIIAGGYNGSVSGDAHCIDDGC 59
Query: 49 --YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G GA+ YVT PC
Sbjct: 60 YLRDGHCVRTIHAEMNAILQCAKFGISTDGASLYVTDFPCLQC 102
>gi|322391647|ref|ZP_08065115.1| cytidine and deoxycytidylate deaminase [Streptococcus peroris ATCC
700780]
gi|321145458|gb|EFX40851.1| cytidine and deoxycytidylate deaminase [Streptococcus peroris ATCC
700780]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAEV A+ + E +G TAYVT PC + + I + +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNCTKQLLQVGCERVVYINQYRMD 123
Query: 104 VDDPDVRVSG 113
+
Sbjct: 124 DYAQHLYHEK 133
>gi|170759519|ref|YP_001785356.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169406508|gb|ACA54919.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 145
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63
++ A+ ++ +G V +IVK+ +I + T HAE+ ++++A
Sbjct: 4 YIEYAIIEAKKSLAIGEV----PVGAIIVKENKIIAKSHNLKETLKDPIAHAEILSIKKA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+G YVTLEPC
Sbjct: 60 CNILGDWRLKGCKMYVTLEPCPMC 83
>gi|312885990|ref|ZP_07745618.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
gi|311301527|gb|EFQ78568.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
Length = 150
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 30/106 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M SF+ FM+ AL ++ + + V ++ KD +I G
Sbjct: 1 MQKPSFEHIFMNLALDLAQRSHCVKA---QVGAVLAKDTRIISIGYNGPPAGTHNCDEEW 57
Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPC 79
HAE A+ A G GAT Y TL PC
Sbjct: 58 PETGCARDAKGSCSLALHAEENAILYAVKNGARLEGATLYTTLSPC 103
>gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
Length = 585
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
+FM +L + T T +V ++V G V+ G + G HAE ALE+ E
Sbjct: 433 HRKFMELSLEMANKCD-ETQTQYNVGAVLVNRGKVLATGHSRELPGNTHAEQCALEKYFE 491
Query: 66 E------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
E +G Y T+EPC+ G P + I V V+ +
Sbjct: 492 ETGKREIPKGTEIYTTMEPCTLRLSGNIPCADRIIGTTIKTCFVGIVEPDTFVKNNSCSA 551
Query: 118 WLSQKGIIVDRMMESEGKI 136
++ GI + E +
Sbjct: 552 KFAENGIEYIHIPGYEEEC 570
>gi|253998683|ref|YP_003050746.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
gi|253985362|gb|ACT50219.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4]
Length = 175
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V L+V DG +IGRG+ A G HAE+QA+ EA G T YVTLEPC+
Sbjct: 37 PVGALVVLDGKIIGRGMNAPIGSHDPTAHAEIQAMREAAAAIGNYRLVGCTLYVTLEPCA 96
Query: 81 HYG 83
Sbjct: 97 MCS 99
>gi|111018655|ref|YP_701627.1| hypothetical protein RHA1_ro01656 [Rhodococcus jostii RHA1]
gi|110818185|gb|ABG93469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
jostii RHA1]
Length = 245
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 1/135 (0%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + DS + + V+ + A +I + D ++ L+
Sbjct: 104 IAVVTRTGNVPPDSPLFAGGVRPIVVTTRRVAETRGAALGESADIVVAGDDSVEMPALMA 163
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L RG +L EGG + H + LVD + L + + G +P+ +
Sbjct: 164 ALRDRGFGRILCEGGPTLLHDLVTHDLVDEMCLTLAPRLAGPQTLPASSGPTVQAPRTLS 223
Query: 341 VRRDYFGSD-VCLEY 354
+ D + L Y
Sbjct: 224 LEHALINDDFLYLRY 238
>gi|46190701|ref|ZP_00121128.2| COG0590: Cytosine/adenosine deaminases [Bifidobacterium longum
DJO10A]
gi|189440344|ref|YP_001955425.1| cytosine/adenosine deaminase [Bifidobacterium longum DJO10A]
gi|239622901|ref|ZP_04665932.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|312133678|ref|YP_004001017.1| cumb [Bifidobacterium longum subsp. longum BBMN68]
gi|317482318|ref|ZP_07941338.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bifidobacterium sp. 12_1_47BFAA]
gi|189428779|gb|ACD98927.1| Cytosine/adenosine deaminase [Bifidobacterium longum DJO10A]
gi|239514898|gb|EEQ54765.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517778|emb|CBK71394.1| tRNA-adenosine deaminase [Bifidobacterium longum subsp. longum F8]
gi|311772943|gb|ADQ02431.1| CumB [Bifidobacterium longum subsp. longum BBMN68]
gi|316916198|gb|EFV37600.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bifidobacterium sp. 12_1_47BFAA]
gi|320459488|dbj|BAJ70109.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 149
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 2 EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 59 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 118
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 119 DPHIGHSPEVHGG 131
>gi|254471099|ref|ZP_05084502.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Pseudovibrio sp. JE062]
gi|211960241|gb|EEA95438.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Pseudovibrio sp. JE062]
Length = 275
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 11/216 (5%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
++ + ++ S D I S ++ + +H LRA DA++VG+GT +AD+
Sbjct: 64 CQAQKQFVIGQLGQSVDGRIATVTGDSNYVSCSEALIHLHRLRALCDAVVVGVGTAVADN 123
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P+LT R P RI++DP+ ++ DS +++ ++I +
Sbjct: 124 PQLTVRHVS--GRHPARIVIDPYGRMPRDSTLLQDNSTRRIVITRTDAHARYPEGVECFQ 181
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ ++ R +LVEGGA FI +++D + L + ++IG G
Sbjct: 182 LQPDAKGRLSCAEI--RHALREFRCILVEGGAWTLSRFIELKMIDRLHLMIAPLIIGSG- 238
Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
P L+ ++ +R DV +G ++
Sbjct: 239 -PRGLQLPAIDYLAQAIR-----PDVTWHLLGVDML 268
>gi|327470713|gb|EGF16169.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK330]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|297200779|ref|ZP_06918176.1| deaminase [Streptomyces sviceus ATCC 29083]
gi|297147728|gb|EDY56383.2| deaminase [Streptomyces sviceus ATCC 29083]
Length = 162
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DG-IVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + G T+ V +++ DG V+ G HAEV A+ A
Sbjct: 22 MRLALDEA----GRAGTDVPVGAVVLSPDGTTVLAAGHNEREAVGDPTAHAEVLAIRRAA 77
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 78 AELGEWRLTGCTLVVTLEPCTMC 100
>gi|242058805|ref|XP_002458548.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
gi|241930523|gb|EES03668.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor]
Length = 228
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++GI++G G
Sbjct: 69 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 126 SANGNPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVSEV 182
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
V D V + LS GI V + +I +
Sbjct: 183 IYFVEKKIDNSAHVYVASHKLLSMAGIKVRKHQPQMAQIPIKFQEP 228
>gi|116831274|gb|ABK28591.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++G+++G G
Sbjct: 67 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
+ G P HAEV A+ A G YVT+ PC+
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNEC 168
>gi|42565719|ref|NP_190423.2| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|91806546|gb|ABE66000.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|332644907|gb|AEE78428.1| dCMP deaminase [Arabidopsis thaliana]
Length = 232
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++G+++G G
Sbjct: 67 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGIGYNGFPRGCSDDKLPWAKK 123
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
+ G P HAEV A+ A G YVT+ PC+
Sbjct: 124 SRTGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNEC 168
>gi|28868808|ref|NP_791427.1| cytosine deaminase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852047|gb|AAO55122.1| cytosine deaminase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 145
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA+ ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAIDEAQLGLDEGGI--PIGSVIVHAGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R A Y TL PC+
Sbjct: 62 QPASVYREAVLYTTLSPCAMCS 83
>gi|225849717|ref|YP_002729951.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Persephonella marina EX-H1]
gi|225645135|gb|ACO03321.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Persephonella marina EX-H1]
Length = 221
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 6/192 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGS----VPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+R + + V+ D + + S + + +H LRA+ D I+VG T+
Sbjct: 1 MQRPYTIIVSEVTVDGKLTLRRGRSSKEIMQFMDDEANRYLHELRAKVDGIMVGAETIRT 60
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D+P LT R +P RI+ + LD+ I++ ++ + + K
Sbjct: 61 DNPFLTVRYVE--GKNPTRIVPTSKADIPLDANILEKHAPTIIVTSESAPEEKVKALKEK 118
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ I D DL +++ L +G+ +L+VEGG+ + + I LVD I L ++G
Sbjct: 119 VEVIISGKDQVDLIEMMDTLYRKGIKTLMVEGGSTLNWNLIKFGLVDEIRLIHMPFIVGG 178
Query: 323 GGIPSPLEEGYL 334
P+ +
Sbjct: 179 EDTPTLVGGEGF 190
>gi|167628994|ref|YP_001679493.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
gi|167591734|gb|ABZ83482.1| come operon protein 2 [Heliobacterium modesticaldum Ice1]
Length = 146
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
+D+ F+ A S T SV +IVKD + G G + G P
Sbjct: 4 DWDSYFIDIAFAVSSRS---TCPRRSVGAVIVKDKRIKGTGYNGSPAGLPHCTDAGCCMW 60
Query: 54 --------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAEV A+ E EE +GAT YVT PC+
Sbjct: 61 NNHCVRTIHAEVNAIMECSPEERKGATIYVTDRPCAEC 98
>gi|86607357|ref|YP_476120.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Synechococcus sp. JA-3-3Ab]
gi|86555899|gb|ABD00857.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Synechococcus sp. JA-3-3Ab]
Length = 174
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEVQALE 61
+M AL+ + G P VA L+V G ++ HAE+ AL
Sbjct: 22 HRAWMQLALQEAERA-GEAGEVP-VAALVVGPGEELLALSSNRRERDRDPTAHAEILALR 79
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
+AG+ +G YVTLEPC
Sbjct: 80 QAGQRLGDWQLQGCRLYVTLEPCPMC 105
>gi|327489897|gb|EGF21686.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1058]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|325690868|gb|EGD32869.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK115]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|125718308|ref|YP_001035441.1| dCMP deaminase [Streptococcus sanguinis SK36]
gi|323351275|ref|ZP_08086931.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
VMC66]
gi|125498225|gb|ABN44891.1| DCMP deaminase, putative [Streptococcus sanguinis SK36]
gi|322122499|gb|EFX94210.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
VMC66]
gi|324991558|gb|EGC23491.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK353]
gi|324993919|gb|EGC25838.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK405]
gi|324994762|gb|EGC26675.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK678]
gi|325687201|gb|EGD29223.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK72]
gi|325694913|gb|EGD36818.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK150]
gi|325696064|gb|EGD37955.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK160]
gi|327463181|gb|EGF09502.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1]
gi|327474790|gb|EGF20195.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK408]
gi|328946547|gb|EGG40686.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1087]
gi|332359448|gb|EGJ37268.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK355]
gi|332361943|gb|EGJ39745.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK49]
gi|332362515|gb|EGJ40315.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1056]
Length = 155
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|299532573|ref|ZP_07045963.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
gi|298719520|gb|EFI60487.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
Length = 164
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 3 VSSFD-ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
+S D +++ ++R + G S ++V+DG V+ R V HAE
Sbjct: 1 MSKQDSEKYLLESIRLAMGNVKGRESATWPFGAVLVRDGKVLARAVNQVDDLCDPTAHAE 60
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+QAL A + + G+ Y + PCS
Sbjct: 61 MQALRIAAKALGSTDLSGSVMYASGYPCSMCH 92
>gi|189502659|ref|YP_001958376.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498100|gb|ACE06647.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus
5a2]
Length = 160
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 30/106 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M FD F+ AL+ ++ + V ++ KD +I G
Sbjct: 1 MNRPEFDDIFIQLALQLAKRSHCVKL---QVGAVLAKDTRIISIGYNGPPSGTYNCDEQW 57
Query: 51 ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPC 79
GCP HAE A+ A GAT Y+TL PC
Sbjct: 58 PGIGCPRDVKGGCSLAIHAEQNAILYALSNQAAVTGATLYITLSPC 103
>gi|124024890|ref|YP_001014006.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
NATL1A]
gi|123959958|gb|ABM74741.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. NATL1A]
Length = 225
Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 11/222 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
K+ + L +A S D I G + + + A SD IL+G T+
Sbjct: 1 MKKKWVKLVLASSIDGRIAYPEGGKTQLGQSGDRLVLEESLAWSDGILMGGQTLRDHQSI 60
Query: 207 LTCRLNGLQEHSPMRI----ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ L + + + +D P+
Sbjct: 61 CLIKNKSLLKKRTSKGKNEQPIALIASNQIDFPENWLFFQQPLQRWLLQMQDKKNEIMLP 120
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + L L +G+ +++ GGA + +F+ L+D + + + +IG
Sbjct: 121 DGFDKRINLRITWRDSLDDLYQKGIAKIVLLGGANLISAFLLENLIDELQITITPHLIGG 180
Query: 323 G------GIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + + N++ G++ + + Y
Sbjct: 181 DYCWVSSELKNLNTIMNKKNNWILKESKKLGNNELLIRYFRN 222
>gi|330971095|gb|EGH71161.1| cytosine deaminase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 145
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAFDEAQLGLKEGGI--PIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R + Y TL PC+
Sbjct: 62 QPASVYRDSVLYTTLSPCAMCS 83
>gi|118483842|gb|ABK93812.1| unknown [Populus trichocarpa]
Length = 229
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 33/158 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------- 47
S+D FM+ A + N V +V ++GI++G G
Sbjct: 70 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGIILGIGYNGFPRGCSDDKLPWAKK 126
Query: 48 AYGGCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 127 SKSGDPLETKYPYVCHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYF 186
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
+ D + LS GI V + +
Sbjct: 187 VEKNLNNSDIAYIA---SHKLLSMAGIKVRKRQPRMDQ 221
>gi|121604898|ref|YP_982227.1| CMP/dCMP deaminase [Polaromonas naphthalenivorans CJ2]
gi|120593867|gb|ABM37306.1| CMP/dCMP deaminase, zinc-binding protein [Polaromonas
naphthalenivorans CJ2]
Length = 411
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D FM AL +R G V ++V+ G VI G A HAE+ AL
Sbjct: 3 DEAFMEMALVQARVAAAFGEV----PVGAVVVRQGKVIATGRNAPVEAHDPTAHAEIMAL 58
Query: 61 EEA-----GEEARGATAYVTLEPCSHYG 83
A +VTLEPC+
Sbjct: 59 RAAALALGNYRLDECELFVTLEPCAMCS 86
>gi|164688345|ref|ZP_02212373.1| hypothetical protein CLOBAR_01990 [Clostridium bartlettii DSM
16795]
gi|164602758|gb|EDQ96223.1| hypothetical protein CLOBAR_01990 [Clostridium bartlettii DSM
16795]
Length = 163
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M + +D FM +L + V IV D ++ G
Sbjct: 1 MKRTDYISWDEYFMGISLLSGMRSK---DPSTQVGACIVDSDNRIVSIGYNGFLNGCSDE 57
Query: 48 ----AYGGC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G HAE A+ A G+ G + YV L PC
Sbjct: 58 DFPWEREGDFLNTKYPYVVHAEQNAILNARGKNLEGCSIYVNLFPCHDC 106
>gi|160871633|ref|ZP_02061765.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
gi|159120432|gb|EDP45770.1| tRNA-specific adenosine deaminase [Rickettsiella grylli]
Length = 160
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58
VS D +M AL + S + ++V + VI T HAE+
Sbjct: 8 VSQRDTAYMQLALNQAAHAK--RSHEVPIGAILVWNDHVIATAYNQTLTRCDPTAHAEIV 65
Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHY 82
L+E ++ + AT YVTLEPC
Sbjct: 66 VLQETAKQLKNHRLLDATLYVTLEPCLMC 94
>gi|186684043|ref|YP_001867239.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
gi|186466495|gb|ACC82296.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102]
Length = 161
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQAL 60
+MS AL ++ G P V +I+ G ++ +G HAE+ AL
Sbjct: 10 IHQEWMSCALELAKVA-GDAGEVP-VGAVIIDSTGKLLAQGENRKERDKDPTAHAEILAL 67
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ A + T YVTLEPC
Sbjct: 68 KTAATTLQNWHLNECTLYVTLEPCPMC 94
>gi|327461076|gb|EGF07409.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1057]
Length = 155
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|156387793|ref|XP_001634387.1| predicted protein [Nematostella vectensis]
gi|156221469|gb|EDO42324.1| predicted protein [Nematostella vectensis]
Length = 96
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
+F+ A++ S+ +I KD +I HAEV A+ +A
Sbjct: 7 QFLERAVQLSKEGSDQ-GLGTPFGAVITKDNKIIAETANLSFVNCDPTAHAEVSAIRQAC 65
Query: 65 -----EEARGATAYVTLEPCSHY 82
+ G Y + PC+
Sbjct: 66 SALKSRDLTGCDLYTSCYPCAMC 88
>gi|318606786|emb|CBY28284.1| tRNA-specific adenosine-34 deaminase [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 183
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V D VIG G HAE+ AL + G+ AT YVTLEPC
Sbjct: 40 PVGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCV 99
Query: 81 HY 82
Sbjct: 100 MC 101
>gi|313826960|gb|EFS64674.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL063PA1]
Length = 149
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R T + + +I+ +G V+ HAEV A+ A
Sbjct: 1 MTQALDVARRAA--TRGDVPIGAVILGANGEVLSEAGNERERTGDPTAHAEVLAIRRAAE 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ARDGWRLGDCTLVVTLEPCTMC 80
>gi|270285018|ref|ZP_06194412.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum Nigg]
gi|270289043|ref|ZP_06195345.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum Weiss]
Length = 148
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65
M AL +R P V C+IV+ +I RG + HAE+ + A E
Sbjct: 1 MKKALDEARKA-YELDEVP-VGCIIVQGDAIIARGHNSVERLKDPTAHAEMICISAAAEY 58
Query: 66 ----EARGATAYVTLEPCSHY 82
+ T Y TLEPC
Sbjct: 59 LQNWRLKDTTLYCTLEPCLMC 79
>gi|256028497|ref|ZP_05442331.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
gi|289766417|ref|ZP_06525795.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
gi|289717972|gb|EFD81984.1| deoxycytidylate deaminase [Fusobacterium sp. D11]
Length = 161
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHEC 104
>gi|319793607|ref|YP_004155247.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus
EPS]
gi|315596070|gb|ADU37136.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus
EPS]
Length = 368
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE------EARGATAYVTLEPC 79
V ++VKDG VI G + HAE+ AL AG G +VTLEPC
Sbjct: 26 PVGAVLVKDGQVIATGRNTPVAQHDPSAHAEINALR-AGASALGNYRLDGCELFVTLEPC 84
Query: 80 SHY 82
+
Sbjct: 85 AMC 87
>gi|303231464|ref|ZP_07318195.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella atypica ACS-049-V-Sch6]
gi|302513901|gb|EFL55912.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella atypica ACS-049-V-Sch6]
Length = 159
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|298483515|ref|ZP_07001691.1| guanine deaminase [Bacteroides sp. D22]
gi|298270272|gb|EFI11857.1| guanine deaminase [Bacteroides sp. D22]
Length = 156
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEE 62
M A+ S+ +V + +I KDG ++ GV HAEV A+
Sbjct: 4 EALMRKAIELSKENV--VNGGGPFGAVIATKDGEIVATGVNRVTASCDPTAHAEVSAIRA 61
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 AAAKLGTFDLSGYEIYTSCEPCPMC 86
>gi|225017541|ref|ZP_03706733.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
DSM 5476]
gi|224949691|gb|EEG30900.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 26/137 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-------------AYGGCP--- 53
M AL ++ N V IV +D ++ G + G
Sbjct: 1 MGIALLSAQRSK---DPNTQVGACIVGQDNKILSLGYNGMPIGCSDDELPWSNQGEALDT 57
Query: 54 ------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
HAE+ A+ +G++ GA Y TL PC+ ++ + +
Sbjct: 58 KYLFVCHAELNAILNSGKDLSGAKLYTTLFPCNECAKAIIQSGIKEVVYCSDKYADTEST 117
Query: 108 DVRVSGRGLQWLSQKGI 124
G+ + +G
Sbjct: 118 IASKKMFGMAGVCYRGY 134
>gi|226504812|ref|NP_001140513.1| hypothetical protein LOC100272576 [Zea mays]
gi|194699798|gb|ACF83983.1| unknown [Zea mays]
gi|195610442|gb|ACG27051.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
Length = 186
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 13/136 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F+S A+ + V ++V + VI HAEV A+
Sbjct: 29 DRDHKFLSKAVEEAYRGV-DCGDGGPFGAVVVHNDEVIVSCHNMVLKNTDPTAHAEVTAI 87
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
EA ++ Y + EPC + + + D + +
Sbjct: 88 REACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDFIADA 147
Query: 113 GRGLQWLSQKGIIVDR 128
RG + + + + +
Sbjct: 148 LRGTGYYQKANMEIKQ 163
>gi|282162767|ref|YP_003355152.1| hypothetical protein MCP_0097 [Methanocella paludicola SANAE]
gi|282155081|dbj|BAI60169.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 162
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+ D FM A ++ T V +IVK G ++ G
Sbjct: 7 THDEYFMEIANVVAKRS---TCLRIHVGAVIVKGGQILSTGYNGAPHGFEHCLDIGCIRE 63
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 64 KENVAHGTRHELCRAVHAEQNAIIQAAIHGVSIEGATVYCTHQPCILCTKM 114
>gi|330837260|ref|YP_004411901.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
gi|329749163|gb|AEC02519.1| dCMP deaminase [Spirochaeta coccoides DSM 17374]
Length = 161
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AL + + V IV + ++G G G P
Sbjct: 9 SWDEYFMGVALLSAMRSK---DPSTQVGACIVSPEKRIVGVGY---NGFPSGCNDDDLPW 62
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + +G++ YV L PC+
Sbjct: 63 EREGAFLETKYPFVCHAELNAILNSSGNLKGSSLYVALFPCNEC 106
>gi|307083979|ref|ZP_07493092.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
SUMu012]
gi|308366346|gb|EFP55197.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis
SUMu012]
Length = 206
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 30/219 (13%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+L +Q H+T K A S D A S I+ ++ +H RA +DAILVG GTV
Sbjct: 12 WLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRAIADAILVGTGTV 71
Query: 201 LADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
LADDP LT RL ++ + +++++ +I E + + AL+
Sbjct: 72 LADDPALTARLADGSLAPQQPLRVVVGKRDIPPEARVLNDEARTMMIRTHEPMEVLRALS 131
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
R T +L+EGG +A +F+ + ++ I+ Y + I+
Sbjct: 132 DR--------------------------TDVLLEGGPTLAGAFLRAGAINRILAYVAPIL 165
Query: 320 IGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+G + + + G D+ L +
Sbjct: 166 LGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDLLLSLV 204
>gi|295102170|emb|CBK99715.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii L2-6]
Length = 159
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M + +D FM AL + + V IV + ++ G
Sbjct: 1 MKRTDYINWDEYFMGIALLTAMRSK---DPSSQVGACIVSPENKILSLGYNGMPIGCDDD 57
Query: 48 ----AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ A +GA YVTL PC+
Sbjct: 58 AMPWEREGEPLNTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNEC 106
>gi|158334126|ref|YP_001515298.1| cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
gi|158304367|gb|ABW25984.1| Cytosine/adenosine deaminase [Acaryochloris marina MBIC11017]
Length = 150
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AA++ ++ + + ++VK+G ++GRG G HAE+ ALE G
Sbjct: 6 FMDAAIQEAQRGLAAGGI--PIGSVVVKNGTIVGRGHNLRVQQGSAILHAEMSALETLGR 63
Query: 66 EA----RGATAYVTLEPCSHY 82
+ + T Y TL PCS
Sbjct: 64 QPAMFYQDVTLYTTLSPCSMC 84
>gi|262372745|ref|ZP_06066024.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter junii
SH205]
gi|262312770|gb|EEY93855.1| guanine deaminase (Guanase) (guanine aminase) (guanine
aminohydrolase) (GAH) (GDEase) [Acinetobacter junii
SH205]
Length = 151
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+F+ A+ + +V A L+VK+ +I GV HAE+ AL EA
Sbjct: 4 QKFIQQAVDLALENVKRGGR--PFAALVVKNNEIISTGVNQIKLTNDPTAHAELLALREA 61
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T Y + +PC
Sbjct: 62 GRLLSTPNLEDCTVYASGQPCPMC 85
>gi|311746929|ref|ZP_07720714.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
PR1]
gi|126578621|gb|EAZ82785.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp.
PR1]
Length = 160
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 34/156 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----------- 49
M FD FM A+ ++ + V ++ K+ +I G
Sbjct: 1 MEKPDFDDIFMELAVNLAKRSHCIKKH---VGAVLTKETRIISIGYNGPPAGTHNCDDEF 57
Query: 50 --GGCP-----------HAEVQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFII 93
GC HAE A+ A + G+T YVTL PC R
Sbjct: 58 PENGCARDSKGSCSLALHAEQNAILYAVKNNTSVEGSTLYVTLAPCLACARIIFSMGISK 117
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ + + G+ +L + GI VDR
Sbjct: 118 VVYL----FSYAEYKGIGTDEGVDFLRKFGIKVDRY 149
>gi|114773341|ref|ZP_01450545.1| hypothetical protein OM2255_12392 [alpha proteobacterium
HTCC2255]
gi|114546275|gb|EAU49186.1| hypothetical protein OM2255_12392 [alpha proteobacterium
HTCC2255]
Length = 150
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM A+ ++ G V LI +G +I HAE+ + A
Sbjct: 7 FMPIAIIEAKKAASRGEV----PVGALIEINGEIISSAGNRTRELKDPTAHAEILVIRNA 62
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E GA YVTLEPC
Sbjct: 63 CSILGVERLIGANLYVTLEPCPMC 86
>gi|39938589|ref|NP_950355.1| cytosine/adenosine deaminase [Onion yellows phytoplasma OY-M]
gi|39721698|dbj|BAD04188.1| cytosine/adenosine deaminase [Onion yellows phytoplasma OY-M]
Length = 161
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
+ FM AL+ ++ + + V + +I R HAE A
Sbjct: 5 NQQHIFFMKEALKEAQKAYLK--EEVPIGAVAVLNQKIIARAHNNRNTKKLFFGHAEFLA 62
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
L +AG++ + YVTLEPC
Sbjct: 63 LMKAGKKINSRFLNDVSLYVTLEPCLMC 90
>gi|289617324|emb|CBI56091.1| unnamed protein product [Sordaria macrospora]
Length = 168
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 20/142 (14%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALEE 62
+M AL ++ TN V ++V ++ G T G HAE +
Sbjct: 9 DHKAYMRLALSLAQKSPPK-PTNYRVGAVVVDVPSNTILATGYTLELEGNTHAEQCCFMK 67
Query: 63 ------------AGEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPD 108
A Y T+EPCS G P + + G + V
Sbjct: 68 LAQQHGVSEEKLAEVLPSNLALYTTVEPCSKRLSGNLPCVERVLRMAGCIKTVYVGILEP 127
Query: 109 VR--VSGRGLQWLSQKGIIVDR 128
+ G + L GI V
Sbjct: 128 EKFVQENTGRKSLKDAGIEVVH 149
>gi|170695254|ref|ZP_02886401.1| CMP/dCMP deaminase zinc-binding [Burkholderia graminis C4D1M]
gi|170139874|gb|EDT08055.1| CMP/dCMP deaminase zinc-binding [Burkholderia graminis C4D1M]
Length = 166
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+ VI G G HAE+ AL A + G YVTLEPC
Sbjct: 18 PVGAVLVRGDEVIATGFNHPIGAHDPSAHAEMVALRAAAQVAQNYRLPGCELYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|330955311|gb|EGH55571.1| cytosine deaminase [Pseudomonas syringae Cit 7]
Length = 145
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
FM AA ++ + + +IV G +IGRG H E+ ALE AG
Sbjct: 4 FMQAAFDEAQLGLKEGGI--PIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ R + Y TL PC+
Sbjct: 62 QPASVYRNSVLYTTLSPCAMCS 83
>gi|297539076|ref|YP_003674845.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
gi|297258423|gb|ADI30268.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301]
Length = 162
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D +M + + + V +IVKDG+VIGRG + HAE+ AL +
Sbjct: 14 DEHYMQ--IALALAQEAAAAGEVPVGAIIVKDGVVIGRGGNSPIDTHDPTAHAEIAALRD 71
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G + YVTLEPC+
Sbjct: 72 AAKNLGNYRLVGCSLYVTLEPCAMC 96
>gi|289548666|ref|YP_003473654.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Thermocrinis albus DSM 14484]
gi|289182283|gb|ADC89527.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Thermocrinis albus DSM 14484]
Length = 220
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 3/186 (1%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + + + +H +RA+ D I+VG TV D+P LT R +P
Sbjct: 17 LTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRTDNPSLTVRYVE--GKNP 74
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+R+I + LD+ I ++ ++ + + + ++ D D KL
Sbjct: 75 IRVIPCSTANVPLDANIFSKDAPTIIVTTLRAPEERIQRIRELGAEVWVVGEDLVDFDKL 134
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ +L RG+ SL+VEGGA++ I VD I L +V+G +P+ + +
Sbjct: 135 MPLLYERGIKSLMVEGGASINWELIKRGYVDEIRLIHLPVVVGGENVPTLVGGEGFKSLK 194
Query: 339 MCVRRD 344
+
Sbjct: 195 NLLHLR 200
>gi|262282453|ref|ZP_06060221.1| comE operon protein 2 family protein [Streptococcus sp. 2_1_36FAA]
gi|262261744|gb|EEY80442.1| comE operon protein 2 family protein [Streptococcus sp. 2_1_36FAA]
Length = 155
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--------------- 49
++D F + AL + T V ++VK+ VI G
Sbjct: 7 AWDEYFAAQALLIANRS---TCKRARVGAVLVKENKVISTGYNGSVSGTEHCIDHECLVV 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + E +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|325104661|ref|YP_004274315.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
12145]
gi|324973509|gb|ADY52493.1| CMP/dCMP deaminase zinc-binding protein [Pedobacter saltans DSM
12145]
Length = 157
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 31/109 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M +S FD FM+ A ++ N V ++ KD +I G
Sbjct: 1 MSLS-FDQIFMNLASDLAQKS--HCVKNH-VGAVLTKDTRIISIGYNGPPAGTHNCDEEW 56
Query: 51 ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
GCP HAE A+ A G + +GAT Y TL PC
Sbjct: 57 PEEGCPRDSKNSCSLALHAEENAILYAVKNGAQIQGATLYTTLSPCISC 105
>gi|294669183|ref|ZP_06734263.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308815|gb|EFE50058.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 246
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62
RFM AL + G V ++V++G V+ HAE++AL E
Sbjct: 94 RFMQLALHQAEAAAAAGEV----PVGAVVVRNGEVLSTAHNRCVADCDIGSHAELRALAE 149
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG G Y+TLEPC+
Sbjct: 150 AGRQTGSYRLDGCDVYITLEPCAMC 174
>gi|302858549|gb|ADL71295.1| gp35 [Mycobacterium phage Eagle]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 33/106 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
++D F+ A + S V ++VKD V G G G P
Sbjct: 4 TWDEYFLGIARAVAERSDCERSK---VGAVVVKDRRVRGTGYNGAPAGRPGCGSCPRRRS 60
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCS 80
HAE AL E+ GAT Y+T EPC+
Sbjct: 61 SVDPGSGYDSGPGRCVAVHAEANALLHCDREDLVGATLYITREPCN 106
>gi|240103131|ref|YP_002959440.1| Deoxycytidylate deaminase (dCMP deaminase) [Thermococcus
gammatolerans EJ3]
gi|239910685|gb|ACS33576.1| Deoxycytidylate deaminase (dCMP deaminase) [Thermococcus
gammatolerans EJ3]
Length = 177
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRGMDHCIDVGCLI 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|15898882|ref|NP_343487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
solfataricus P2]
gi|2493564|sp|P95872|RIB7_SULSO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
reductase; AltName: Full=HTP reductase
gi|1707704|emb|CAA69508.1| riboflavin biosynthesis protein ribG [Sulfolobus solfataricus P2]
gi|13815385|gb|AAK42277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (ribD)
[Sulfolobus solfataricus P2]
gi|261603290|gb|ACX92893.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus solfataricus 98/2]
Length = 213
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ + ++ + VS D + S ++ K + H +R++ DA++VG TV D+P
Sbjct: 1 MVMKPYVIIFSTVSIDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNP 59
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
LT + G +P+R+++ F L KI T + + V +
Sbjct: 60 SLTVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPSTVIYTSNYESEKV---EEFIRKG 115
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
I+ L + V L+VEGG + FI L D I + S + G G
Sbjct: 116 VIVRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFGNGVS 175
Query: 326 PS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + E + + G++V L Y
Sbjct: 176 FTQGEGFIGEDSPRLELIDAKICECGNEVHLTYKK 210
>gi|67922696|ref|ZP_00516200.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Crocosphaera watsonii WH 8501]
gi|67855478|gb|EAM50733.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Crocosphaera watsonii WH 8501]
Length = 165
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEV 57
+M AL + G V +I+ G +I +G+ + HAE+
Sbjct: 10 ETHCYWMKQALNLGQEAAKAGDV----PVGAVIIDSQGKLIAQGLNCKEQNHDPTAHAEI 65
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ +A ++ T YVTLEPC
Sbjct: 66 IAIRQATQKLHSWYLNKCTLYVTLEPCIMC 95
>gi|312869046|ref|ZP_07729223.1| ComE operon protein 2 [Lactobacillus oris PB013-T2-3]
gi|311095472|gb|EFQ53739.1| ComE operon protein 2 [Lactobacillus oris PB013-T2-3]
Length = 163
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A + T SV ++V+D +I G
Sbjct: 3 KRIDWDQYFMVQAALLASRS---TCKRLSVGAVLVRDKRIIAGGYNGSVSGDDHCIDEGC 59
Query: 49 --YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G GA+ YVT PC
Sbjct: 60 YLRDGHCVRTIHAEMNAILQCARFGMSTDGASLYVTDFPCLQC 102
>gi|254578456|ref|XP_002495214.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
gi|238938104|emb|CAR26281.1| ZYRO0B06028p [Zygosaccharomyces rouxii]
Length = 231
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 2/198 (1%)
Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
YL + + ITL A S D+ I I+ +K H LR D ILVG GT
Sbjct: 16 PYLPPDNDSKPFITLTYAQSLDSRISKGHGIRTTISHPETKTMTHYLRYHHDGILVGTGT 75
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
LADDP L C+ N + SP IIL+ K + ++ L +
Sbjct: 76 ALADDPGLNCKYNDAMDQSPRPIILNHSGKWKFNGSKLQELYEKGHGKKPIIVVSELPVD 135
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSIILYRSQI 318
++ + + G+ S++VEGGA V + + +S LV+S+I+ +
Sbjct: 136 EDSSVDYLVCQSRQWSILFDKLHKEYGLKSIMVEGGANVINQLLMSSNLVNSLIITVGPV 195
Query: 319 VIGEGGIP-SPLEEGYLE 335
+GE G+ SP L+
Sbjct: 196 YLGEKGVSVSPAGPLQLK 213
>gi|322387410|ref|ZP_08061020.1| cytidine and deoxycytidylate deaminase [Streptococcus infantis ATCC
700779]
gi|321141939|gb|EFX37434.1| cytidine and deoxycytidylate deaminase [Streptococcus infantis ATCC
700779]
Length = 160
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 12 AWDEYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHDCLVI 68
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 69 EGHCVRTLHAEVNAILQGSERGVPKGFTAYVTHFPCLNC 107
>gi|27468193|ref|NP_764830.1| putative dCMP deaminase [Staphylococcus epidermidis ATCC 12228]
gi|57867051|ref|YP_188732.1| comE operon protein 2 [Staphylococcus epidermidis RP62A]
gi|293366451|ref|ZP_06613128.1| ComE operon protein 2 [Staphylococcus epidermidis M23864:W2(grey)]
gi|27315739|gb|AAO04874.1|AE016748_108 putative dCMP deaminase [Staphylococcus epidermidis ATCC 12228]
gi|57637709|gb|AAW54497.1| comE operon protein 2 [Staphylococcus epidermidis RP62A]
gi|291319220|gb|EFE59589.1| ComE operon protein 2 [Staphylococcus epidermidis M23864:W2(grey)]
gi|329725366|gb|EGG61849.1| ComE operon protein 2 [Staphylococcus epidermidis VCU144]
gi|329735176|gb|EGG71468.1| ComE operon protein 2 [Staphylococcus epidermidis VCU045]
Length = 153
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|329921024|ref|ZP_08277552.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners SPIN 1401G]
gi|328935300|gb|EGG31780.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners SPIN 1401G]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
R M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 ERIMKLAFLEADKAEQQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|307729964|ref|YP_003907188.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1003]
gi|307584499|gb|ADN57897.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1003]
Length = 350
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+ VI +G HAE+ AL A + G YVTLEPC
Sbjct: 202 PVGAVLVRGDEVIAKGFNHPISAHDPSAHAEMVALRAAAQVVENYRLPGCELYVTLEPCL 261
Query: 81 HY 82
Sbjct: 262 MC 263
>gi|282598641|ref|YP_003358738.1| gp35 [Mycobacterium phage Peaches]
gi|255928168|gb|ACU41786.1| gp35 [Mycobacterium phage Peaches]
Length = 198
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 45/182 (24%), Gaps = 38/182 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
++D F+ A + S V ++VKD V G G P
Sbjct: 4 TWDEYFLGIARAAAERSDCERSK---VGAVVVKDRRVRATGYNGAPAGRPGCGTCPRRTS 60
Query: 54 -------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
HAE AL E+ RGA+ Y+T EPC + A
Sbjct: 61 NARPGVDSYSSGGTRCVAVHAEANALLYCDREDLRGASLYITREPCGDCSKLIDAAGIER 120
Query: 94 ECGIRRVV----VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
P G I+V E + +
Sbjct: 121 VVYPFEWEKPEGCVCAGPTDPYHGWCDPCSKLPKIVVQEQDRWERNEYTVRMEPGMLPDE 180
Query: 150 SH 151
Sbjct: 181 PW 182
>gi|46579939|ref|YP_010747.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|46449355|gb|AAS96006.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
vulgaris str. Hildenborough]
Length = 161
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSR--WHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQAL 60
R M AL +R G V ++V K G +IGRG HAE+ AL
Sbjct: 14 ERLMDEALAEARLAQAEGEV----PVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVAL 69
Query: 61 EE-----AGEEARGATAYVTLEPCSHY 82
A G VTLEPC
Sbjct: 70 RMAATTTANYRLGGTFLVVTLEPCLMC 96
>gi|312870914|ref|ZP_07731019.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 3008A-a]
gi|311093604|gb|EFQ51943.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 3008A-a]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
R M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 ERIMKLAFLEADKAEQQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|282850251|ref|ZP_06259630.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella parvula ATCC 17745]
gi|282579744|gb|EFB85148.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella parvula ATCC 17745]
Length = 159
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|258405729|ref|YP_003198471.1| CMP/dCMP deaminase zinc-binding [Desulfohalobium retbaense DSM
5692]
gi|257797956|gb|ACV68893.1| CMP/dCMP deaminase zinc-binding protein [Desulfohalobium
retbaense DSM 5692]
Length = 165
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
M AL +R T + ++V D V+ RG +T HAE+ AL A +
Sbjct: 19 MELALDEARAAQ--THGEVPIGAVLVDPDKRVLARGGNRTITDSDPTAHAEIVALRRACQ 76
Query: 66 -----EARGATAYVTLEPCSHY 82
GA VTLEPC
Sbjct: 77 SVGNYRLPGAILAVTLEPCLMC 98
>gi|91783891|ref|YP_559097.1| tRNA-adenosine deaminase [Burkholderia xenovorans LB400]
gi|91687845|gb|ABE31045.1| tRNA-adenosine deaminase [Burkholderia xenovorans LB400]
Length = 196
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+ VI +G G HAE+ AL A + G YVTLEPC
Sbjct: 44 PVGAVLVRGDEVIAKGFNHPIGAHDPSAHAEMVALRAAAQAVENYRLPGCELYVTLEPCL 103
Query: 81 HY 82
Sbjct: 104 MC 105
>gi|320592583|gb|EFX05013.1| tRNA-specific adenosine deaminase [Grosmannia clavigera kw1407]
Length = 684
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
P+ +M+ A+ ++ + T+ P V C++V +G VI +G+ A G HAE+
Sbjct: 309 PIKRLHRGYMNEAVAMAQLAL-RTNETP-VGCVLVHNGRVIAKGMNATNMTRNGTRHAEL 366
Query: 58 QALEE 62
L
Sbjct: 367 MCLNA 371
>gi|50306895|ref|XP_453423.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642557|emb|CAH00519.1| KLLA0D08074p [Kluyveromyces lactis]
Length = 340
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 33/108 (30%), Gaps = 36/108 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
+D FM A + + V C+IV+D V+ G G P
Sbjct: 182 WDTYFMKLANLAASRANCMKR---RVGCVIVRDCRVVATGY---NGTPRNMKNCNQGGCS 235
Query: 54 ----------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG + G A Y PC
Sbjct: 236 RCNDGDDKSLHTCLCLHAEENALLEAGRDRVGPNAILYCDTCPCLTCS 283
>gi|303320721|ref|XP_003070358.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110048|gb|EER28213.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 345
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D FM A ++ + V C++VKD V+ G GGCP
Sbjct: 180 SWDEYFMQLASLAAQRSNCMKR---RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRC 236
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E G Y PC
Sbjct: 237 NLVQGTAQALSTCLCLHAEENALLEAGRERIGEGCILYCNTCPCLTCS 284
>gi|6321938|ref|NP_012014.1| Dcd1p [Saccharomyces cerevisiae S288c]
gi|729306|sp|P06773|DCTD_YEAST RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|500658|gb|AAB68985.1| Dcd1p: dCMP deaminase [Saccharomyces cerevisiae]
gi|151944091|gb|EDN62384.1| dCMP deaminase [Saccharomyces cerevisiae YJM789]
gi|285810051|tpg|DAA06838.1| TPA: Dcd1p [Saccharomyces cerevisiae S288c]
Length = 312
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 218
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 219 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 264
>gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
Length = 529
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQA 59
D M AL +R G V +I DG V+ R HAE+ A
Sbjct: 380 DLDHVAMGEALAAAREAFGNAEV--PVGAVITGPDGQVVARAANTARAHGDMTRHAELDA 437
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A G T YVTLEPC
Sbjct: 438 LRAAAATLGTAYLTGCTLYVTLEPCPMC 465
>gi|190405923|gb|EDV09190.1| dCMP deaminase [Saccharomyces cerevisiae RM11-1a]
gi|256269017|gb|EEU04358.1| Dcd1p [Saccharomyces cerevisiae JAY291]
gi|323333286|gb|EGA74684.1| Dcd1p [Saccharomyces cerevisiae AWRI796]
gi|323337344|gb|EGA78597.1| Dcd1p [Saccharomyces cerevisiae Vin13]
gi|323354690|gb|EGA86525.1| Dcd1p [Saccharomyces cerevisiae VL3]
Length = 312
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 218
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 219 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 264
>gi|282164705|ref|YP_003357090.1| cytosine deaminase [Methanocella paludicola SANAE]
gi|282157019|dbj|BAI62107.1| cytosine deaminase [Methanocella paludicola SANAE]
Length = 145
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
FM AAL ++ + + ++V DG+++GRG G HAE+ LE AG
Sbjct: 3 EFMRAALDEAKKGLREGGI--PIGSVLVVDGVIVGRGHNRRVQQGSTIKHAEMDCLESAG 60
Query: 65 EE----ARGATAYVTLEPCSHYG 83
R +T Y TL PC
Sbjct: 61 RLRAATYRKSTLYSTLSPCDMCS 83
>gi|238019264|ref|ZP_04599690.1| hypothetical protein VEIDISOL_01128 [Veillonella dispar ATCC 17748]
gi|237863963|gb|EEP65253.1| hypothetical protein VEIDISOL_01128 [Veillonella dispar ATCC 17748]
Length = 159
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDSADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|206578758|ref|YP_002237260.1| cytidine/deoxycytidylate deaminase family protein [Klebsiella
pneumoniae 342]
gi|206567816|gb|ACI09592.1| cytidine/deoxycytidylate deaminase family protein [Klebsiella
pneumoniae 342]
Length = 152
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VT-AYGGCPHAEVQ 58
+S+ D R++ AL + ++ ++V+ ++ HAE+
Sbjct: 1 MSADD-RYLQRALALANQNIADGGR--PFGAVLVRHDEIVAEAVNTFHLNGDPTAHAELN 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ + R Y + +PC
Sbjct: 58 AVRDLAARLGSEVLRECVIYASGQPCPMC 86
>gi|171384|gb|AAA34561.1| dCMP deaminase [Saccharomyces cerevisiae]
Length = 312
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 218
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 219 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 264
>gi|218674406|ref|ZP_03524075.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli GR56]
Length = 157
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
RFM AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 11 RFMEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLAC 68
Query: 65 -----EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 69 EALGQERLAGADLYVTLEPCTMC 91
>gi|120602647|ref|YP_967047.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio vulgaris DP4]
gi|120562876|gb|ABM28620.1| tRNA-adenosine deaminase [Desulfovibrio vulgaris DP4]
Length = 161
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSR--WHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQAL 60
R M AL +R G V ++V K G +IGRG HAE+ AL
Sbjct: 14 ERLMDEALAEARLAQAEGEV----PVGAVVVDKAGRIIGRGHNRCLRDNDPSAHAEMVAL 69
Query: 61 EE-----AGEEARGATAYVTLEPCSHY 82
A G VTLEPC
Sbjct: 70 RMAATTTANYRLGGTFLVVTLEPCLMC 96
>gi|218461412|ref|ZP_03501503.1| putative nitrogen fixation symbiosis related protein [Rhizobium
etli Kim 5]
Length = 157
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
RFM AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 11 RFMEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLAC 68
Query: 65 -----EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 69 EALGQERLAGADLYVTLEPCTMC 91
>gi|300811153|ref|ZP_07091665.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497857|gb|EFK32867.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 171
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG +IG+G G HAE+ A++EA ++ + +VTLEPC
Sbjct: 28 PIGAVVVGPDGQIIGQGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|309805439|ref|ZP_07699486.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 09V1-c]
gi|309810071|ref|ZP_07703917.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners SPIN 2503V10-D]
gi|308165257|gb|EFO67493.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 09V1-c]
gi|308169570|gb|EFO71617.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners SPIN 2503V10-D]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
+ M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 EKIMKLAFLEADKAEQQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|283457271|ref|YP_003361841.1| cytosine/adenosine deaminase [Rothia mucilaginosa DY-18]
gi|283133256|dbj|BAI64021.1| cytosine/adenosine deaminase [Rothia mucilaginosa DY-18]
Length = 175
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQA 59
S + +M+ AL G P + ++V + G++IG HAEV A
Sbjct: 26 SEHSEWMAHALVEGA-AAGERGEIP-IGAVVVDEQGVIIGSAGNTREQEHDPSAHAEVNA 83
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ +A G T VT+EPC
Sbjct: 84 IRQAAACRGQWRLDGCTLVVTVEPCLMC 111
>gi|328545540|ref|YP_004305649.1| Bifunctional deaminase-reductase domain protein [polymorphum gilvum
SL003B-26A1]
gi|326415281|gb|ADZ72344.1| Bifunctional deaminase-reductase domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 262
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 8/222 (3%)
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ + + ++ S D I S I G + +H LRA DA++
Sbjct: 39 RWTSLFSPFFSPGSATFVVGQLGQSLDGRIATVNGQSKYINGPGCLSHLHRLRAVCDAVV 98
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
+G GT +ADDP+LT R + P R+++DP +L K ++ ++ E
Sbjct: 99 IGAGTAIADDPQLTVR--LVDGPHPARVLIDPRGRLPATLKALRDDGTRRFVVTLEGTRL 156
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ + + + ++ L G LLVEGG+ F++S +D + L
Sbjct: 157 NVPESVEIIRLAGDRDGHLAPRAIVEALASHGFRRLLVEGGSWTISRFLSSGCLDRLHLL 216
Query: 315 RSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++IG G P +P+E G +V L
Sbjct: 217 IAPMIIGA-GQPGLELNPIECLSQALRPTMTAHR-LGDEVLL 256
>gi|15920477|ref|NP_376146.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
tokodaii str. 7]
gi|15621260|dbj|BAB65255.1| 213aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 213
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 10/194 (5%)
Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229
++ K ++H+LR + DA+LVG TV D+P+L + +P+R+ +
Sbjct: 22 YYSELSCPYDKMRLHILRTEVDAVLVGSNTVRIDNPKLLVKYAK--GRNPVRVTISESLN 79
Query: 230 LSLDSKIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ I + + + A +KK + I + + L GV
Sbjct: 80 FDPNLNIFSVPPDTIIYTTYQAYLRNEDKANELKKKGVKIRVLEKLSSCIIAEDLYNLGV 139
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRD 344
+L+EGG +FI D I + S + G G+ EG+ V
Sbjct: 140 KRILIEGGGRTIWNFIKDNCFDEIRITISPKIFG-NGVSVVNGEGFKGIEAPELKLVDCK 198
Query: 345 YFG--SDVCLEYIG 356
++ L Y+
Sbjct: 199 ICECKKEIHLRYMR 212
>gi|312222461|emb|CBY02401.1| similar to deoxycytidylate deaminase [Leptosphaeria maculans]
Length = 357
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 45/153 (29%), Gaps = 34/153 (22%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D FM A + + V C IV++ VI G GGCP
Sbjct: 196 SWDQYFMQLADLAAHRSNCMKR---RVGCCIVREKRVISTGYNGTPRGMPNSIQGGCPRC 252
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRS--PPCAQFII 93
HAE AL EAG + A A Y PC ++
Sbjct: 253 NTATPGPHTLSTCLCLHAEENALLEAGRDRIAANAILYCNTCPCLTCSVKIVQVGIGEVV 312
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
V + R Q+ G +V
Sbjct: 313 YHHGYSVDEQTAQVLAQGGVRLRQFTPPAGGVV 345
>gi|307579329|gb|ADN63298.1| CMP/dCMP deaminase zinc-binding protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 151
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
M AL + P V +++ +G ++G G T++ HAE+ AL AG
Sbjct: 1 MRHALTLAHRAATEFDEIP-VGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGH 59
Query: 66 EAR-----GATAYVTLEPCSHY 82
+ R G T YVTLEPC
Sbjct: 60 QLRNHRMPGCTLYVTLEPCLMC 81
>gi|260593324|ref|ZP_05858782.1| guanine deaminase [Prevotella veroralis F0319]
gi|260534736|gb|EEX17353.1| guanine deaminase [Prevotella veroralis F0319]
Length = 155
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A+ S R G +I + G +I G HAEV A
Sbjct: 4 EELMRKAIELSIESVRNGGG------PFGAIIARKGEIIAEGSNGVTIYNDPTAHAEVTA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ +A E+ G Y + EPC
Sbjct: 58 IRKACEKLGTFDLTGCEIYTSCEPCPMC 85
>gi|212224519|ref|YP_002307755.1| deoxycytidylate deaminase [Thermococcus onnurineus NA1]
gi|212009476|gb|ACJ16858.1| deoxycytidylate deaminase [Thermococcus onnurineus NA1]
Length = 181
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 25 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRGMEHCIDVGCLI 78
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 79 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 119
>gi|149278806|ref|ZP_01884941.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Pedobacter sp.
BAL39]
gi|149230425|gb|EDM35809.1| cytidine/deoxycytidylate deaminase (dCMP deaminase) [Pedobacter sp.
BAL39]
Length = 150
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 30/109 (27%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M SF+ FM+ A + + + V ++ KD +I G
Sbjct: 1 MSKPSFEHIFMNLASELAERSHCVRA---HVGAVLTKDTRIISIGYNGPPAETHNCDEEW 57
Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ A G + G+T Y TL PC
Sbjct: 58 PETGCARDSRGSCSLALHAEENAILYASKNGSKIEGSTLYTTLSPCIAC 106
>gi|311897119|dbj|BAJ29527.1| putative deaminase [Kitasatospora setae KM-6054]
Length = 179
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M A+ + + + + V ++ DG V+GRG HAEV A+ A
Sbjct: 37 MRLAIEEA--ALATATGDVPVGAFVLGPDGTVLGRGHNVREAVGDPTGHAEVVAIRAAAA 94
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 95 EVGEWRLSGCTLVVTLEPCTMC 116
>gi|315924779|ref|ZP_07920996.1| tRNA-specific adenosine deaminase [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621678|gb|EFV01642.1| tRNA-specific adenosine deaminase [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 164
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
+M AL R + + V ++V G V+ HAE+ + A +
Sbjct: 19 WMRLALDEGRQAL--AAGEFPVGAVVVCGGQVVAADHNRKETLQDPTAHAELLVIRAAAQ 76
Query: 66 -----EARGATAYVTLEPCSHY 82
T YVT EPC
Sbjct: 77 RLGRWRLDDCTLYVTAEPCPMC 98
>gi|259501366|ref|ZP_05744268.1| tRNA-specific adenosine deaminase [Lactobacillus iners DSM 13335]
gi|302190913|ref|ZP_07267167.1| hypothetical protein LineA_02730 [Lactobacillus iners AB-1]
gi|309808233|ref|ZP_07702142.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 01V1-a]
gi|312872162|ref|ZP_07732235.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2062A-h1]
gi|312873556|ref|ZP_07733603.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2052A-d]
gi|312875738|ref|ZP_07735733.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2053A-b]
gi|325912947|ref|ZP_08175321.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners UPII 60-B]
gi|259167219|gb|EEW51714.1| tRNA-specific adenosine deaminase [Lactobacillus iners DSM 13335]
gi|308168521|gb|EFO70630.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 01V1-a]
gi|311088730|gb|EFQ47179.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2053A-b]
gi|311090809|gb|EFQ49206.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2052A-d]
gi|311092246|gb|EFQ50617.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LEAF 2062A-h1]
gi|325477761|gb|EGC80899.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners UPII 60-B]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
+ M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 EKIMKLAFLEADKAEQQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|23466072|ref|NP_696675.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
NCC2705]
gi|213693307|ref|YP_002323893.1| CMP/dCMP deaminase, zinc-binding [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|23326799|gb|AAN25311.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
longum NCC2705]
gi|213524768|gb|ACJ53515.1| CMP/dCMP deaminase, zinc-binding [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 158
Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 11 EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 67
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 68 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 127
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 128 DPHIGHSPEVHGG 140
>gi|282863444|ref|ZP_06272503.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
gi|282561779|gb|EFB67322.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
Length = 142
Score = 66.5 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + ++ + V +++ DG + G HAEV AL A
Sbjct: 1 MRQALHEAAQAA--SAGDVPVGAVVLGPDGAPLATGHNEREATGDPTAHAEVLALRRAAS 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 59 VLGGWRLTGCTLVVTLEPCTMC 80
>gi|297158628|gb|ADI08340.1| cytidine/deoxycytidine deaminase [Streptomyces bingchenggensis
BCW-1]
Length = 144
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + T P V +++ DG +G G HAEV AL +A
Sbjct: 1 MRLALEEAARA-PETGDVP-VGAVVLGPDGSPLGHGRNEREAHGDPTAHAEVLALRDAAG 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 RLGSWRLTGCTLVVTLEPCTMC 80
>gi|294635160|ref|ZP_06713669.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
gi|291091465|gb|EFE24026.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685]
Length = 182
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V ++V D VIG G T + HAE+ AL++ G + AT YVTLEPC
Sbjct: 37 PVGAVLVLDDQVIGEGWNRPITRHDPTAHAEIMALQQGGAVLQNYRLLEATLYVTLEPCV 96
Query: 81 HY 82
Sbjct: 97 MC 98
>gi|295674403|ref|XP_002797747.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb01]
gi|226280397|gb|EEH35963.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb01]
Length = 350
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C+IV++ VI G GGCP
Sbjct: 185 WDQYFMQLASLAAQRSNCMKR---RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241
Query: 54 ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG E G A Y PC
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCNTCPCLTCS 288
>gi|147679158|ref|YP_001213373.1| deoxycytidylate deaminase [Pelotomaculum thermopropionicum SI]
gi|146275255|dbj|BAF61004.1| deoxycytidylate deaminase [Pelotomaculum thermopropionicum SI]
Length = 165
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 33/107 (30%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+D FM A +R T V +IVK+ ++ G
Sbjct: 21 WDEYFMDIAEVVARRS---TCLRRQVGAVIVKERRILASGYNGAPAGLKHCLETGCLREQ 77
Query: 47 --------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G +GA YVT +PC
Sbjct: 78 KKVPPGERHELCRGLHAEQNALIQAAVYGTAIQGAVCYVTHQPCVLC 124
>gi|288555665|ref|YP_003427600.1| DNA binding and uptake late competence protein [Bacillus
pseudofirmus OF4]
gi|288546825|gb|ADC50708.1| late competence operon required for DNA binding and uptake
[Bacillus pseudofirmus OF4]
Length = 189
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D FM+ + + V IV++ +I G
Sbjct: 1 MERISWDQYFMAQSHLLALRSACTRL---MVGATIVREKRIIAGGYNGSVSGSDHCIDQG 57
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G GA YVT PC H
Sbjct: 58 CYVVDHHCIRTIHAEVNALLQCAKFGVPTEGAELYVTHFPCVHC 101
>gi|288929191|ref|ZP_06423036.1| guanine deaminase [Prevotella sp. oral taxon 317 str. F0108]
gi|288329293|gb|EFC67879.1| guanine deaminase [Prevotella sp. oral taxon 317 str. F0108]
Length = 155
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M A+ S V +I + G +I + HAEV A+ A
Sbjct: 4 EELMRRAIALSEESVKNGGG--PFGAVIARKGEIIAEAANRVTLDHDPTAHAEVSAIRLA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 SSKLGTFNLSGCDIYTSCEPCPMC 85
>gi|150019816|ref|YP_001312070.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
8052]
gi|149906281|gb|ABR37114.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB
8052]
Length = 149
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 43/153 (28%), Gaps = 19/153 (12%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
F+ A ++ G V +IV D +IGR HAE+ A++EA
Sbjct: 4 FLKIAKEEAKMAMKKGEI----PVGAVIVLDDKIIGRAHNLKETLNDSTAHAEILAIKEA 59
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ A YVTLEPC A + D S +
Sbjct: 60 SKFIGDWRLNRAEMYVTLEPCPMC----AGAIIQSRISKVYIGTFNKDMGACGSVIDVTD 115
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151
V + + + +
Sbjct: 116 NKWLNSFVSTKWLYDKECSDIMLEFFCQRRNKY 148
>gi|313124289|ref|YP_004034548.1| nucleoside deaminase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280852|gb|ADQ61571.1| Nucleoside deaminase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 169
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG +IGRG G HAE+ A++EA ++ + +VTLEPC
Sbjct: 28 PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|309803507|ref|ZP_07697600.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 11V1-d]
gi|308164391|gb|EFO66645.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 11V1-d]
Length = 158
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
+ M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 EKIMKLAFLEADKAEKQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|16125138|ref|NP_419702.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
gi|221233866|ref|YP_002516302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Caulobacter crescentus NA1000]
gi|13422148|gb|AAK22870.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15]
gi|220963038|gb|ACL94394.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Caulobacter crescentus NA1000]
Length = 331
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 38/301 (12%)
Query: 27 TNPSVACLIVK-DGIVIGRGVTAY---GGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
NP V C+++ G + A + A E G AR T VTLEPC+H+
Sbjct: 32 PNPPVGCVVLDAAGETLAVAAHQRAGQAHAEAAALAACRERGAAARIDTLLVTLEPCNHH 91
Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR----------MMES 132
GR+PPC + I+ R V + V DP++ V+G G L G+ V +
Sbjct: 92 GRTPPCVEAILASPARTVWIAVRDPNLAVAGGGAARLEAAGLEVRFLSDLAHPEASDLVR 151
Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192
+ + + E R +T+K A+++ + S + S H LR ++DA
Sbjct: 152 RARRLIAPFALWAREGRPWLTIKQAINRQGDMIPPPGASTFTSET-SLTLAHDLRRRADA 210
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
I+ G GTVLAD P T R R+ + + + I + + +
Sbjct: 211 IITGSGTVLADAPAFTVRRTPDPRPFARRLAILDRRRRTPGDYIAAAEGRGFRVSLHD-- 268
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
L L++ L GV LVE G + S + + L D +
Sbjct: 269 ---------------------ALPSLVSELAADGVLEALVECGPTLLASVLETGLWDEHV 307
Query: 313 L 313
+
Sbjct: 308 V 308
>gi|332367208|gb|EGJ44944.1| cytidine and deoxycytidylate deaminase [Streptococcus sanguinis
SK1059]
Length = 155
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDQYFAAQALLIANRSTCKRAK---VGAVLVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 50 GG----CPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
G HAEV A+ + + +G TAYVT PC +
Sbjct: 64 DGHCVRTLHAEVNAILQGADRGVPKGFTAYVTHFPCLNC 102
>gi|90021123|ref|YP_526950.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
gi|89950723|gb|ABD80738.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40]
Length = 176
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+D ++G G HAE+ AL +A + AT YVT+EPC+
Sbjct: 29 PVGAVVVRDNKILGSGFNTPISGCDPTAHAEITALRQAAKNEHNYRLPDATLYVTIEPCT 88
Query: 81 HY 82
Sbjct: 89 MC 90
>gi|325297264|ref|YP_004257181.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
DSM 18170]
gi|324316817|gb|ADY34708.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis
DSM 18170]
Length = 144
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A ++ V LIVKD ++I G G P
Sbjct: 11 LDKRYMRMATIWAENSYCTRRK---VGALIVKDKMIISDGY---NGTPAGFENVCEDENG 64
Query: 54 -------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 LTKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIEC 103
>gi|300172852|ref|YP_003772017.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
gi|299887230|emb|CBL91198.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811]
Length = 160
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 27/106 (25%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---- 53
M + S+D F++ A S T T V +IV++ +I G + G P
Sbjct: 1 MSYNRISWDQYFIAQAAILSTRS---TCTRLHVGAVIVQNNRIISSGYNGSVSGTPHCTD 57
Query: 54 --------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GA YVT PC H
Sbjct: 58 VGDLIVDGHCIRAVHAEQNALMQAAQMGISVDGAEVYVTDVPCVHC 103
>gi|315653116|ref|ZP_07906041.1| tRNA-specific adenosine deaminase [Lactobacillus iners ATCC
55195]
gi|315489481|gb|EFU79118.1| tRNA-specific adenosine deaminase [Lactobacillus iners ATCC
55195]
Length = 158
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
+ M A + G + +IV +G +IGRG HAE+ A+
Sbjct: 8 EKIMKLAFLEADKAEKQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|311742295|ref|ZP_07716104.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
15272]
gi|311313923|gb|EFQ83831.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM
15272]
Length = 233
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 31/91 (34%)
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
D D +L RG +L EGG ++ S LVD + L + + G
Sbjct: 137 HGDDEIDWTAVLEEFGRRGWNRVLGEGGPSLFASLTELDLVDELCLTVAPTLTAGDGPRI 196
Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ +++ + + ++ +
Sbjct: 197 THGDAAVDRPLTLAHAEVDDGVLLTRWLRRR 227
>gi|71892310|ref|YP_278044.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|71796416|gb|AAZ41167.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 155
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D +M A+ + G S V +++++G +I G + + HAE+
Sbjct: 6 NVDTIWMRHAIALAAHAEIIGEIS----VGAVLIQNGKLISYGWNSSIICHDPSAHAEIV 61
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL G+ G T YVTLEPC
Sbjct: 62 ALRTGGKVLGNYRLLGTTLYVTLEPCMMC 90
>gi|220920297|ref|YP_002495598.1| bifunctional deaminase-reductase domain-containing protein
[Methylobacterium nodulans ORS 2060]
gi|219944903|gb|ACL55295.1| bifunctional deaminase-reductase domain protein [Methylobacterium
nodulans ORS 2060]
Length = 255
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + ++ S D I S I + + +H LRA DAI+VGIGTVLADDP
Sbjct: 43 CDQPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPR 102
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT R + P RI++DP ++ ++ ++ + +++ + +
Sbjct: 103 LTVRRVAGRS--PARIVIDPAGRIPAQAQCLREDGVRRIVVCRPDTRIPACAEALRIEAP 160
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + L++ L G +L+EGGA FI++ +D + L + +++G G
Sbjct: 161 ----EAFPPQALVSALGRLGFRRILIEGGARTISGFIDAGAIDRLHLMVAPLLLGSG 213
>gi|85709873|ref|ZP_01040938.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Erythrobacter sp. NAP1]
gi|85688583|gb|EAQ28587.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Erythrobacter sp. NAP1]
Length = 149
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M + FMS+AL +R +G + ++VKDG +I G H
Sbjct: 1 MRFPAS---FMSSALSLARAASELGEV----PIGAVVVKDGKIIAEGHNETRDQNDPTAH 53
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ A + G +VTLEPC+
Sbjct: 54 AEIVAIRRAAAALGDDRLTGCDLWVTLEPCAMC 86
>gi|329121024|ref|ZP_08249655.1| tRNA-specific adenosine deaminase [Dialister micraerophilus DSM
19965]
gi|327471186|gb|EGF16640.1| tRNA-specific adenosine deaminase [Dialister micraerophilus DSM
19965]
Length = 149
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M+ A++ ++ + +I I+I HAE+ A+++
Sbjct: 3 DKDYMTLAIQEAKKAYMNNEM--PIGAIITYKDIIIANSYNECEKNKNIFDHAEILAIKK 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G T YVT+EPC
Sbjct: 61 ASKLLNTSRLTGCTLYVTIEPCPMC 85
>gi|254495568|ref|ZP_05108490.1| cytosine deaminase [Legionella drancourtii LLAP12]
gi|254355138|gb|EET13751.1| cytosine deaminase [Legionella drancourtii LLAP12]
Length = 147
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEE 62
R++ AA+ +R + + ++V +IGRG G H E+ ALE
Sbjct: 3 HQRYLEAAIEEARRSLAEGGI--PIGAVLVYQDRIIGRGHNQRVQKGSAILHGEMDALEN 60
Query: 63 AGEE----ARGATAYVTLEPCSHYG 83
AG + + Y TL PC+
Sbjct: 61 AGRQQAKIYEQSILYTTLSPCAMCS 85
>gi|120609775|ref|YP_969453.1| CMP/dCMP deaminase [Acidovorax citrulli AAC00-1]
gi|120588239|gb|ABM31679.1| CMP/dCMP deaminase, zinc-binding protein [Acidovorax citrulli
AAC00-1]
Length = 169
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG-----CPHA 55
P+ D R++ A+ + N +IV DG V+ A G HA
Sbjct: 11 PLDERDGRYLRHAIALADKAR--ARGNRPFGAVIVGGDGTVLAEAWNA-NGETGDCTAHA 67
Query: 56 EVQALE-----EAGEEARGATAYVTLEPCSHY 82
E A+ A E AT Y + EPC
Sbjct: 68 ETSAIRVASPQHAREVLARATLYSSGEPCVMC 99
>gi|224130724|ref|XP_002328360.1| predicted protein [Populus trichocarpa]
gi|222838075|gb|EEE76440.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F++ A+ + V ++V++ +I HAEV A+
Sbjct: 27 DRDHKFLTRAVEEAYKGV-ECGDGGPFGAVVVQNDEIIMSCHNMVLKNTDPTAHAEVTAV 85
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 86 REACKKLNRIELSDCEIYASCEPCPMC 112
>gi|85014509|ref|XP_955750.1| deoxycytidylate deaminase [Encephalitozoon cuniculi GB-M1]
gi|19171444|emb|CAD27169.1| BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 150
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
S+ + FM A++ + + V C++V++GIV+ + HAEV +
Sbjct: 5 STTHSFFMEMAVKEAMRAFD--ALEVPVGCVVVRNGIVVSKSHNMTNANKSPLDHAEVIS 62
Query: 60 LEEAGEEARGATAYVTLEPCSHY 82
+ +A + +T YVT EPC
Sbjct: 63 IRDA--DCSNSTFYVTCEPCIMC 83
>gi|325685703|gb|EGD27782.1| cytidine/deoxycytidylate deaminase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 169
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG +IGRG G HAE+ A++EA ++ + +VTLEPC
Sbjct: 28 PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCSLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|259146902|emb|CAY80158.1| Dcd1p [Saccharomyces cerevisiae EC1118]
Length = 312
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 218
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 219 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 264
>gi|21673220|ref|NP_661285.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
gi|21646303|gb|AAM71627.1| cytosine deaminase, putative [Chlorobium tepidum TLS]
Length = 152
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
+S M A R + + P V +++ +G++IGRG HAE+
Sbjct: 1 MSDL-NHCMELAFREAIKA-YESKEVP-VGAVVLDPNGLIIGRGYNQVETLSDATAHAEM 57
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
AL A + G T VTLEPC
Sbjct: 58 IALTSAMATIGSKYLEGCTLAVTLEPCPMC 87
>gi|326522122|dbj|BAK04189.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 53/168 (31%), Gaps = 33/168 (19%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----------- 50
S+D FM+ A + N V +V ++GI++G G +
Sbjct: 70 FISWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 126
Query: 51 -----GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
G P HAEV A+ A G YVT+ PC+ +
Sbjct: 127 KKSARGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVS 183
Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ V D V LS G+ V + +I ++
Sbjct: 184 EVIYFVEKRIDNSDHVYVASHNLLSMAGVKVRKHQPQMTEIPINFQEP 231
>gi|195627622|gb|ACG35641.1| deoxycytidylate deaminase [Zea mays]
Length = 228
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------- 50
S+D FM+ A + N V +V ++GI++G G +
Sbjct: 69 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125
Query: 51 ---GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 126 SASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVSEV 182
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
V D V + LS G+ V + +I +
Sbjct: 183 IYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQIPIQFQEP 228
>gi|182416390|ref|YP_001821456.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
gi|177843604|gb|ACB77856.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
Length = 178
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
D +MS A + L + +I G V+ A HAE+ A+
Sbjct: 20 DDTFYMSLAFNQAIDAWRL--DEVPIGAVIELGGEVVAAAHNTVEEARDPTAHAEMLAIT 77
Query: 62 EAGE-----EARGATAYVTLEPCSHYG 83
+A GAT YVT EPC
Sbjct: 78 QAAAKLGDWRLEGATVYVTKEPCPMCS 104
>gi|300724136|ref|YP_003713453.1| TadA, tRNA -specific adenosine deaminase [Xenorhabdus nematophila
ATCC 19061]
gi|297630670|emb|CBJ91335.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus nematophila
ATCC 19061]
Length = 170
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
S D +M + V ++V D ++ G T + HAE+ A
Sbjct: 10 SYRDEYWMRR--AMALAMQAQAQGEIPVGAILVADNEILAEGFNLPITYHDPTAHAEIIA 67
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
L + G + T YVTLEPC
Sbjct: 68 LRQGGSRLQNYRLLNTTLYVTLEPCVMC 95
>gi|313886388|ref|ZP_07820111.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Porphyromonas asaccharolytica PR426713P-I]
gi|332300169|ref|YP_004442090.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312924164|gb|EFR34950.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Porphyromonas asaccharolytica PR426713P-I]
gi|332177232|gb|AEE12922.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 153
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 17/139 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D R M AL+ + P + +I ++ + HAE+ A+
Sbjct: 11 LDERMMQLALQQALVA-YEADEVP-IGAVIAVGTRILAKSHNQVELLNDPTAHAEMLAIT 68
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+A G+ T YVT+EPC P C + I R+V DP
Sbjct: 69 QATAAIGGKYLPQCTLYVTVEPC------PMCMGALRWTQIGRIVYGTADPKGGYMHYSD 122
Query: 117 QWLSQKGIIVDRMMESEGK 135
K IIV + E E +
Sbjct: 123 ALPHPKSIIVGGVCEEECR 141
>gi|149191235|ref|ZP_01869491.1| deoxycytidylate deaminase [Vibrio shilonii AK1]
gi|148834905|gb|EDL51886.1| deoxycytidylate deaminase [Vibrio shilonii AK1]
Length = 147
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGV-------------- 46
VS + RF+ A VG S +PS V +I K+ ++ G
Sbjct: 2 VSKWAKRFIQMA-EL----VGSWSKDPSTQVGAVITKNNRIVSVGFNGYPHGISDSAEVD 56
Query: 47 ---TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
T Y HAE A+ A + G +VT PC + + ++
Sbjct: 57 ERETKYLKTLHAEENAILFAKRDLDGCEIWVTHFPCPNCAAKIIQTGISVVHCPQQTE-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 116 FLSRWGEKISLSQDMFEQAGVHVNW 140
>gi|116617403|ref|YP_817774.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096250|gb|ABJ61401.1| tRNA-adenosine deaminase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 168
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62
FM AL ++ G + +IV + +I HAE+ A+E
Sbjct: 14 YFMQEALNEAKIAQSEGEV----PIGAVIVYENQMIACAHNHREADQLATAHAELLAIES 69
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A + + +VTLEPC
Sbjct: 70 ANTKLKSWRLENTALFVTLEPCIMC 94
>gi|284173977|ref|ZP_06387946.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
solfataricus 98/2]
Length = 211
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 9/213 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ ++ + VS D + S ++ K + H +R++ DA++VG TV D+P L
Sbjct: 1 MKPYVIIFSTVSIDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T + G +P+R+++ F L KI T + + V + I
Sbjct: 60 TVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPSTVIYTSNYESEKV---EEFIRKGVI 115
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ L + V L+VEGG + FI L D I + S + G G +
Sbjct: 116 VRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFGNGVSFT 175
Query: 328 ----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ E + + G++V L Y
Sbjct: 176 QGEGFIGEDSPRLELIDAKICECGNEVHLTYKK 208
>gi|118586639|ref|ZP_01544079.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC
BAA-1163]
gi|118432954|gb|EAV39680.1| cytidine/deoxycytidylate deaminase [Oenococcus oeni ATCC
BAA-1163]
Length = 156
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
FM AL+ ++ G + ++VKD VI HAE +E
Sbjct: 9 EEFMQLALKQAQTAFDEGEV----PIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIE 64
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + +VT+EPC
Sbjct: 65 GANRSLGDWRLNDCSLFVTIEPCVMC 90
>gi|269798024|ref|YP_003311924.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
2008]
gi|294791904|ref|ZP_06757052.1| deoxycytidylate deaminase (dCMP deaminase) [Veillonella sp. 6_1_27]
gi|269094653|gb|ACZ24644.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM
2008]
gi|294457134|gb|EFG25496.1| deoxycytidylate deaminase (dCMP deaminase) [Veillonella sp. 6_1_27]
Length = 159
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|126179344|ref|YP_001047309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
marisnigri JR1]
gi|125862138|gb|ABN57327.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus
marisnigri JR1]
Length = 228
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 20/232 (8%)
Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGT 199
R H+ + ++ D + + + ++ +H RA+ DAI+VG T
Sbjct: 1 MPEHDRPHVLMMSEITVDGKLTLKRGASSKILMKYMAPETELLLHQTRAEYDAIMVGANT 60
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ D+ LT RL + P+R+I + D+ ++ A +I P +A
Sbjct: 61 IRIDNSFLTVRLVEGKS--PLRVIPSSRADIPPDANVLG--PDARTVIAVSEAAPAENVA 116
Query: 260 FRKKNINIIYCDCRDLKKLLTIL----VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+++ + L ++ GV +++EGG + + +N RLVD I L
Sbjct: 117 RLRESGVDVVVAGEKEVDLPELMGILKRDYGVDRMMIEGGPTLNWAMLNHRLVDEIRLIH 176
Query: 316 SQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKNLCLQ 362
++G PS + ++E R GS++ E+ ++ Q
Sbjct: 177 LPFIVGGADTPSLVGGMHIETEEEMFRLSLKRHFMCGSNLVTEW---DVLYQ 225
>gi|193213141|ref|YP_001999094.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
gi|193086618|gb|ACF11894.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
Length = 152
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEV 57
+S R M A R + + P V +++ +G+VIGRG HAE+
Sbjct: 1 MSDL-NRCMELAFREAIKA-YESKEVP-VGAVVLDPNGLVIGRGYNQVETLSDATAHAEM 57
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
AL A + G T VTLEPC
Sbjct: 58 IALTSAMATLDNKYLEGCTLAVTLEPCPMC 87
>gi|160944642|ref|ZP_02091869.1| hypothetical protein FAEPRAM212_02155 [Faecalibacterium prausnitzii
M21/2]
gi|158443826|gb|EDP20830.1| hypothetical protein FAEPRAM212_02155 [Faecalibacterium prausnitzii
M21/2]
gi|295104361|emb|CBL01905.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii SL3/3]
Length = 159
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D FM AL + N V IV + ++ G
Sbjct: 8 NWDEYFMGIALLTAMRSK---DPNSQVGACIVSPENKILSLGYNGMPMGCSDDEMPWERE 64
Query: 51 GCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ A +GA YVTL PC+
Sbjct: 65 GAPLQTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNEC 106
>gi|313891940|ref|ZP_07825541.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Dialister microaerophilus UPII 345-E]
gi|313119583|gb|EFR42774.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Dialister microaerophilus UPII 345-E]
Length = 149
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +M+ A++ ++ + +I I+I HAE+ A+++
Sbjct: 3 DKDYMTLAIQEAKKAYMNNEM--PIGAIITYKDIIIANSYNECEKNKNIFDHAEILAIKK 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G T YVT+EPC
Sbjct: 61 ASKLLNTSRLTGCTLYVTIEPCPMC 85
>gi|269121089|ref|YP_003309266.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
33386]
gi|268614967|gb|ACZ09335.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC
33386]
Length = 164
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S++ FM AL + V I+ D ++G G G P
Sbjct: 9 SWNEYFMGLALLSGKRSK---DPTTQVGACIIDEDKKIVGIGY---NGFPLGSSDDNMPW 62
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YVT PC+
Sbjct: 63 GKQGDFLETKYPYVVHAELNAILNSIKSLKGCTVYVTHFPCNEC 106
>gi|85057886|ref|YP_456802.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma
AYWB]
gi|42632638|gb|AAS22250.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma]
gi|84789991|gb|ABC65723.1| cytosine deaminase [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 161
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59
+ FM AL+ ++ + + V + +I R HAE A
Sbjct: 5 NQQHIFFMKEALKEAQKAYLK--EEVPIGAIAVLNQKIIARAHNNRNTKKLFFGHAEFLA 62
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
L +AG++ + YVTLEPC
Sbjct: 63 LIKAGKKINSRFLNDVSLYVTLEPCLMC 90
>gi|283769499|ref|ZP_06342395.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bulleidia extructa W1219]
gi|283103767|gb|EFC05153.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bulleidia extructa W1219]
Length = 157
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP---------- 53
+D+ FM A + N V IV + V+ G G P
Sbjct: 4 PWDSYFMGLAHLSALRSK---DPNTQVGAAIVDENHRVVSVGY---NGLPRGCEDSDYPW 57
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + T YV+L PC+
Sbjct: 58 SREGNVLETKYPYVVHAELNAILNSKWPVKDCTIYVSLFPCNEC 101
>gi|332666596|ref|YP_004449384.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
hydrossis DSM 1100]
gi|332335410|gb|AEE52511.1| CMP/dCMP deaminase zinc-binding protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 137
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M SS F+ + L NP V ++++DG++I G ++ HAE
Sbjct: 1 MLNSSLHPFFL-RCHELAATSAEL--GNPPVGAVLIRDGLIIAEGLELARSSGDVTRHAE 57
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGR 84
++A+ A + T EPC
Sbjct: 58 IEAIRAAVHILKTSDLSDCELITTHEPCVMCAY 90
>gi|227524104|ref|ZP_03954153.1| competence protein ComEB [Lactobacillus hilgardii ATCC 8290]
gi|227088735|gb|EEI24047.1| competence protein ComEB [Lactobacillus hilgardii ATCC 8290]
Length = 167
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
+D FM A+ + T SV +IV+D +I G
Sbjct: 15 KWDQYFMMQAVLLASRS---TCERLSVGAVIVRDKRIIAGGYNGSVVGDDHCIDVGCYLV 71
Query: 48 --AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + GE A YVT PC +
Sbjct: 72 DGHCVRTIHAEMNAILQCAKFGESTDNAEIYVTDFPCLQCTKM 114
>gi|300789456|ref|YP_003769747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
gi|299798970|gb|ADJ49345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
Length = 245
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 25/71 (35%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
G+ + EGG + S I + LVD L + ++ + L
Sbjct: 172 EGLGRIDCEGGPRLFGSLIEAGLVDEFRLTVAPFLVAGTSSRASLGAAVDPAELELASVL 231
Query: 345 YFGSDVCLEYI 355
G+ V L Y+
Sbjct: 232 TDGASVLLRYL 242
>gi|296270519|ref|YP_003653151.1| cytosine deaminase [Thermobispora bispora DSM 43833]
gi|296093306|gb|ADG89258.1| Cytosine deaminase [Thermobispora bispora DSM 43833]
Length = 149
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEE 62
D R+M A+ +R + + +V DG V+G G G H E LE
Sbjct: 3 DDRYMRLAIEQARIGLSEGGI--PIGAALVADGEVLGVGRNRRVQEGSAIRHGETDCLEN 60
Query: 63 AGEEA----RGATAYVTLEPCSHY 82
AG R +T Y TL PC
Sbjct: 61 AGRLPARVYRKSTLYTTLSPCHLC 84
>gi|77736501|ref|NP_001029952.1| tRNA-specific adenosine deaminase 2 [Bos taurus]
gi|75057795|sp|Q5E9J7|ADAT2_BOVIN RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
gi|59858211|gb|AAX08940.1| deaminase domain containing 1 [Bos taurus]
gi|296483948|gb|DAA26063.1| tRNA-specific adenosine deaminase 2 [Bos taurus]
Length = 191
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A++ ++ + T V CL+V + V+G+G HAE+ A+++A
Sbjct: 23 EKWMEQAMQMAKDALDNTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCRRRGRSPSEVFEHTVLYVTVEPCIMC 110
>gi|251811005|ref|ZP_04825478.1| competence protein ComEB [Staphylococcus epidermidis BCM-HMP0060]
gi|251805515|gb|EES58172.1| competence protein ComEB [Staphylococcus epidermidis BCM-HMP0060]
gi|329737260|gb|EGG73514.1| ComE operon protein 2 [Staphylococcus epidermidis VCU028]
Length = 153
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|317142986|ref|XP_001819233.2| deoxycytidylate deaminase [Aspergillus oryzae RIB40]
Length = 351
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++V++ VI G GCP
Sbjct: 192 NWDQYFMQLASLAAQRSNCMKR---RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 248
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E G Y PC
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTILYCDTCPCLTC 295
>gi|237738775|ref|ZP_04569256.1| deoxycytidylate deaminase [Fusobacterium sp. 2_1_31]
gi|229423878|gb|EEO38925.1| deoxycytidylate deaminase [Fusobacterium sp. 2_1_31]
Length = 160
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 26/102 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
+D+ FM AL S N V IV D ++G G
Sbjct: 7 DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCEDTDFPWERE 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
G HAE+ A+ + + + YV L PC+
Sbjct: 64 GEFLETKYPYVCHAELNAILNSIKSLKDCVIYVALFPCNECS 105
>gi|83309336|ref|YP_419600.1| cytosine/adenosine deaminase [Magnetospirillum magneticum AMB-1]
gi|82944177|dbj|BAE49041.1| Cytosine/adenosine deaminase [Magnetospirillum magneticum AMB-1]
Length = 148
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +IVKDG VI + HAE+ AL A + YVTLEPC
Sbjct: 24 PVGAVIVKDGQVIAQAGNRVEELGDSTAHAEMLALRAATLFLGDKRLEDCDLYVTLEPC- 82
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
P CA I IRR+ DP G +
Sbjct: 83 -----PMCAAAISLARIRRLYFGAYDPKSGGVEHGAKVFDHATCH 122
>gi|134300992|ref|YP_001114488.1| CMP/dCMP deaminase [Desulfotomaculum reducens MI-1]
gi|134053692|gb|ABO51663.1| CMP/dCMP deaminase, zinc-binding protein [Desulfotomaculum reducens
MI-1]
Length = 147
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
S+D FM + L V +IVKD ++ G
Sbjct: 4 SWDEYFMEITRVVATRSTCLRRK---VGAVIVKDNRILATGYNGAPAGLTHCLEIGCLRE 60
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +G+ YVT +PC +
Sbjct: 61 KLGVPSGQRHELCRALHAEQNAIIQAAVHGTAIQGSIIYVTDQPCVMCSKM 111
>gi|254303368|ref|ZP_04970726.1| dCMP deaminase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148323560|gb|EDK88810.1| dCMP deaminase [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 161
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
++D+ FM A+ S N V IV D ++G G
Sbjct: 7 NWDSYFMGIAILSSMRSK---DPNTQVGACIVNEDKRIVGVGYNGLPKGCDDKEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + YV L PC
Sbjct: 64 GEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHEC 104
>gi|86160056|ref|YP_466841.1| tRNA-adenosine deaminase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776567|gb|ABC83404.1| tRNA-adenosine deaminase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 160
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 6 FDAR-FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
D R M AL +R G V + + +G V+GRG A HAE+
Sbjct: 1 MDEREAMQEALGLAREAAARGEV----PVGAVALFEGRVVGRGANAREAARDPTAHAELL 56
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA G T VTLEPC+
Sbjct: 57 AIQEAARTLGRWRLTGVTLVVTLEPCAMC 85
>gi|325191115|emb|CCA25601.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 1298
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM AL + G V C+ V +I HAE+
Sbjct: 1111 NKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELV 1166
Query: 59 AL-------EEAGEEARGATAYVTLEPCSHY 82
A+ + T YVT EPC
Sbjct: 1167 AIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 1197
>gi|325191114|emb|CCA25600.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 1287
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM AL + G V C+ V +I HAE+
Sbjct: 1100 NKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELV 1155
Query: 59 AL-------EEAGEEARGATAYVTLEPCSHY 82
A+ + T YVT EPC
Sbjct: 1156 AIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 1186
>gi|325191111|emb|CCA25597.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 1290
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM AL + G V C+ V +I HAE+
Sbjct: 1103 NKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELV 1158
Query: 59 AL-------EEAGEEARGATAYVTLEPCSHY 82
A+ + T YVT EPC
Sbjct: 1159 AIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 1189
>gi|325191110|emb|CCA25596.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 1279
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM AL + G V C+ V +I HAE+
Sbjct: 1092 NKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELV 1147
Query: 59 AL-------EEAGEEARGATAYVTLEPCSHY 82
A+ + T YVT EPC
Sbjct: 1148 AIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 1178
>gi|325191109|emb|CCA25595.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 1295
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D FM AL + G V C+ V +I HAE+
Sbjct: 1108 NKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELV 1163
Query: 59 AL-------EEAGEEARGATAYVTLEPCSHY 82
A+ + T YVT EPC
Sbjct: 1164 AIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 1194
>gi|207344561|gb|EDZ71669.1| YHR144Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 288
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
S+D+ FM A + + V C+IV++ VI G GGCP
Sbjct: 162 SWDSYFMKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRC 218
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 219 NDGDSRNLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 264
>gi|189192458|ref|XP_001932568.1| dCMP deaminase [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187974174|gb|EDU41673.1| dCMP deaminase [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 380
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
+D FM A + + V +IV+D +I G GGC
Sbjct: 200 DWDQYFMMIAGLAAMRCNCMKR---RVGAVIVRDRRIISTGYNGTSRRNTNCNQGGCARC 256
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GAT Y PC
Sbjct: 257 NSGTSGSLSACICLHAEENALLEAGRERIGEGATLYCNTCPCLTC 301
>gi|152981801|ref|YP_001353377.1| hypothetical protein mma_1687 [Janthinobacterium sp. Marseille]
gi|151281878|gb|ABR90288.1| Uncharacterized conserved protein [Janthinobacterium sp.
Marseille]
Length = 150
Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56
+ S +F+ A+R ++ G ++ G I GV + HAE
Sbjct: 1 MPSNHEKFLREAVRLAQDNKARGGR----PFGAVLAVGGESIAIGVNNIVHSNDPTTHAE 56
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
++A+ A ++ +G+ Y + PC
Sbjct: 57 MEAIRVASQKLGRPNLKGSVIYASGHPCPMC 87
>gi|325911630|ref|ZP_08174038.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners UPII 143-D]
gi|325476616|gb|EGC79774.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners UPII 143-D]
Length = 158
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
R M A + G + +IV G +IGRG HAE+ A+
Sbjct: 8 ERIMKLAFLEADKAEQQGEI----PIGAVIVDAKGNLIGRGYNRRELDEDATRHAEIIAI 63
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+EA + + +VTLEPC
Sbjct: 64 QEACKNLNSWRLIDCSLFVTLEPCPMC 90
>gi|238878198|gb|EEQ41836.1| deoxycytidylate deaminase [Candida albicans WO-1]
Length = 337
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C+IV++ V+ G G P
Sbjct: 187 TWDSYFMRLADLAALRSNCMKR---RVGCVIVRENRVVATGY---NGTPRHLTNCNEGGC 240
Query: 54 -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG + RG + Y PC
Sbjct: 241 SRCNKGQGSGASLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCLTCS 291
>gi|238501998|ref|XP_002382233.1| deoxycytidylate deaminase, putative [Aspergillus flavus NRRL3357]
gi|220692470|gb|EED48817.1| deoxycytidylate deaminase, putative [Aspergillus flavus NRRL3357]
Length = 343
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++V++ VI G GCP
Sbjct: 192 NWDQYFMQLASLAAQRSNCMKR---RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 248
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E G Y PC
Sbjct: 249 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTILYCDTCPCLTC 295
>gi|126727514|ref|ZP_01743348.1| cytidine and deoxycytidylate deaminase family protein
[Rhodobacterales bacterium HTCC2150]
gi|126703294|gb|EBA02393.1| cytidine and deoxycytidylate deaminase family protein
[Rhodobacterales bacterium HTCC2150]
Length = 143
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAG- 64
M AL + G P V +I+ +DG VI + HAE+ A+ A
Sbjct: 1 MDIALDEA-RAAGQRGEVP-VGAVILSRDGQVIAQAGNETRAQNDPIAHAEILAIRAACS 58
Query: 65 ----EEARGATAYVTLEP 78
E +G YVTLEP
Sbjct: 59 ALGRERLQGFDLYVTLEP 76
>gi|297622621|ref|YP_003704055.1| CMP/dCMP deaminase zinc-binding protein [Truepera radiovictrix
DSM 17093]
gi|297163801|gb|ADI13512.1| CMP/dCMP deaminase zinc-binding protein [Truepera radiovictrix
DSM 17093]
Length = 153
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
+M A + ++V+ G ++ HAE+ + A
Sbjct: 13 EAWMRLAAEVAERGQ------TMFGAVLVRGGALLAEAANTVAKDRDPSAHAELSLIRRA 66
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPP 87
+ G T Y T+EPC +
Sbjct: 67 CRELVTTDLDGCTLYTTVEPCPMCAAACV 95
>gi|224125580|ref|XP_002319621.1| predicted protein [Populus trichocarpa]
gi|222857997|gb|EEE95544.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F+S A+ + V ++V++ V+ HAEV +
Sbjct: 29 DRDHKFLSRAVEEAYKGV-ECGDGGPFGAVVVRNDEVVMSCHNMVLKNTDPTAHAEVTVI 87
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 88 REACKKLNRIELSDCEIYASCEPCPMC 114
>gi|222111201|ref|YP_002553465.1| cmp/dcmp deaminase zinc-binding [Acidovorax ebreus TPSY]
gi|221730645|gb|ACM33465.1| CMP/dCMP deaminase zinc-binding [Acidovorax ebreus TPSY]
Length = 155
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
S D + A+ + G +I + G VI G V ++ HAE+Q
Sbjct: 2 STDTALLRRAVHLAHDNRARGGR----PFGAVIARGGEVIATGVNDIVHSHDPSTHAEMQ 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL A G T Y + PC
Sbjct: 58 ALRAATRQRANPSLAGCTVYASGHPCPMC 86
>gi|139439263|ref|ZP_01772705.1| Hypothetical protein COLAER_01720 [Collinsella aerofaciens ATCC
25986]
gi|133775287|gb|EBA39107.1| Hypothetical protein COLAER_01720 [Collinsella aerofaciens ATCC
25986]
Length = 593
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M + D +FMS P + ++V+ G ++ R HAE
Sbjct: 1 MTSTGIDEKFMSE-ALAEARAAAAVGEVP-IGAVVVRAGEIVARAHNRRELDQDPSAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
AL A + T YVTLEPC
Sbjct: 59 FSALCAAAQSLGRWRLSDCTVYVTLEPCCMC 89
>gi|110597776|ref|ZP_01386060.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
gi|110340683|gb|EAT59163.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
Length = 153
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M A R + V +IV +G VIGRG HAE+ AL A
Sbjct: 8 MELAFREAIKAFEK--KEVPVGAVIVDSNGHVIGRGYNQVESLCDATAHAEMIALTSAMA 65
Query: 64 ---GEEARGATAYVTLEPCSHY 82
+ T VT+EPC
Sbjct: 66 TIGNKYLEDCTLAVTMEPCPMC 87
>gi|226503799|ref|NP_001152254.1| deoxycytidylate deaminase [Zea mays]
gi|195654307|gb|ACG46621.1| deoxycytidylate deaminase [Zea mays]
gi|223948705|gb|ACN28436.1| unknown [Zea mays]
Length = 228
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------- 50
S+D FM+ A + N V +V ++GI++G G +
Sbjct: 69 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKK 125
Query: 51 ---GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 126 SASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVSEV 182
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
V D V + LS G+ V + +I +
Sbjct: 183 IYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQIPIKFQEP 228
>gi|269217562|ref|ZP_06161416.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212497|gb|EEZ78837.1| tRNA-specific adenosine deaminase [Actinomyces sp. oral taxon 848
str. F0332]
Length = 166
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
+ ++ A+ + G V L+V+ V+G G HAE+
Sbjct: 21 EIEREWIGRAMELADRAALAGDV----PVGALVVRGSAVLGVGWNTREARNDPAGHAEIA 76
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL EA + G YVTLEPC+
Sbjct: 77 ALREAAQAVGDWRLEGCDLYVTLEPCTMC 105
>gi|237715975|ref|ZP_04546456.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D1]
gi|237722247|ref|ZP_04552728.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
gi|262407589|ref|ZP_06084137.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645725|ref|ZP_06723411.1| guanine deaminase [Bacteroides ovatus SD CC 2a]
gi|294808352|ref|ZP_06767107.1| guanine deaminase [Bacteroides xylanisolvens SD CC 1b]
gi|229443622|gb|EEO49413.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D1]
gi|229448057|gb|EEO53848.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
gi|262354397|gb|EEZ03489.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638931|gb|EFF57263.1| guanine deaminase [Bacteroides ovatus SD CC 2a]
gi|294444428|gb|EFG13140.1| guanine deaminase [Bacteroides xylanisolvens SD CC 1b]
gi|295085135|emb|CBK66658.1| Cytosine/adenosine deaminases [Bacteroides xylanisolvens XB1A]
Length = 156
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEE 62
M A+ S+ +V +I KDG ++ GV HAEV A+
Sbjct: 4 EALMRKAIELSKENVENGGG--PFGAVIATKDGEIVATGVNRVTASCDPTAHAEVSAIRA 61
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 AAAKLGTFDLSGYEIYTSCEPCPMC 86
>gi|126331283|ref|XP_001370213.1| PREDICTED: similar to Dctd protein [Monodelphis domestica]
Length = 345
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 185 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGY---NGMPNGCSDDLLPWSRT 238
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 239 AEKKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 281
>gi|313146154|ref|ZP_07808347.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
gi|313134921|gb|EFR52281.1| cytidine/deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
Length = 155
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ SR +V +I KDG ++ GV HAEV A+ A
Sbjct: 4 EELMRKAIELSRENVANGGG--PFGAVIAKDGEIVVTGVNRVTASCDPTAHAEVTAIRAA 61
Query: 64 GEE-----ARGATAYVTLEPCSHY 82
+ G Y + EPC
Sbjct: 62 ASKLGTFNLSGYEIYTSCEPCPMC 85
>gi|297572271|ref|YP_003698045.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
haemolyticum DSM 20595]
gi|296932618|gb|ADH93426.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 143
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
M A+ +R + V +I+ DG VIGRG HAEV AL EA
Sbjct: 1 MHEAMEIARRA--GADGDVPVGAVILGPDGGVIGRGWNTREADADPCGHAEVNALREAAR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ALGRWNLSGCTLVVTLEPCTMC 80
>gi|257388460|ref|YP_003178233.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halomicrobium
mukohataei DSM 12286]
gi|257170767|gb|ACV48526.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p
yrimidine1-reductase [Halomicrobium mukohataei DSM
12286]
Length = 223
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP----- 205
H+ + A+S D + + I+G ++V LRA+SDA++VG+GTVLADDP
Sbjct: 2 HVVVNAAMSADGKLSTRRREQIEISGTRDFDRVDELRAESDAVMVGVGTVLADDPSLTLD 61
Query: 206 ---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
R + + +P R++ D + D++++ A ++ + +
Sbjct: 62 DPERQRAREDRGEPANPARVVADSQVRTPPDARVLDE--AALTYLLVSQAALTDFVTQME 119
Query: 263 KNINIIYCDCRDLKKLLTILVGR---GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+ D L+T L G+ L+VEGG + S LVD + ++ V
Sbjct: 120 DVGATVIVAGEDRVDLVTALAKLEGDGIDQLMVEGGGELIFSLFEEGLVDELSVFVGSTV 179
Query: 320 IGEGGIPSPLEEGYLEKNFMCVR---RDYFGSDVCLEYIGKN 358
IG P+ + + F + + V L + +
Sbjct: 180 IGGRDAPTLADGEGFVEEFPALSLDGVERVDDGVLLSWTVTD 221
>gi|68482051|ref|XP_715043.1| hypothetical protein CaO19.7243 [Candida albicans SC5314]
gi|46436646|gb|EAK96005.1| hypothetical protein CaO19.7243 [Candida albicans SC5314]
Length = 337
Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C+IV++ V+ G G P
Sbjct: 187 TWDSYFMRLADLAALRSNCMKR---RVGCVIVRENRVVATGY---NGTPRHLTNCNEGGC 240
Query: 54 -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG + RG + Y PC
Sbjct: 241 SRCNKGQGSGASLATCLCLHAEENALLEAGRDRIRGESVLYCNTCPCLTCS 291
>gi|322420509|ref|YP_004199732.1| dCMP deaminase [Geobacter sp. M18]
gi|320126896|gb|ADW14456.1| dCMP deaminase [Geobacter sp. M18]
Length = 151
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D F+ ++ T V ++VKD ++ G
Sbjct: 1 MVRPSWDEYFIEITRLVAKRS---TCLRRQVGAVLVKDKNILATGYNGAPSGTSHCLDIG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y PC +
Sbjct: 58 CLREKMGIPSGERHELCRGLHAEQNAIIQAAKHGTSIEGATLYCNTMPCIICSKM 112
>gi|330934131|ref|XP_003304428.1| hypothetical protein PTT_17018 [Pyrenophora teres f. teres 0-1]
gi|311318971|gb|EFQ87490.1| hypothetical protein PTT_17018 [Pyrenophora teres f. teres 0-1]
Length = 286
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 31/105 (29%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM A + + V +IV+D +I G
Sbjct: 106 DWDQYFMMIAGLAAMRCNCMKR---RVGAVIVRDRRIISTGYNGTSRRNTNCNQGGCRRC 162
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GAT Y PC
Sbjct: 163 NSGTSGSLSACICLHAEENALLEAGRERIGEGATLYCNTCPCLTC 207
>gi|296112127|ref|YP_003622509.1| hypothetical protein LKI_10005 [Leuconostoc kimchii IMSNU 11154]
gi|295833659|gb|ADG41540.1| hypothetical protein LKI_10005 [Leuconostoc kimchii IMSNU 11154]
Length = 82
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
T NP V +IV++ +I G G HAE+ A ++
Sbjct: 20 YKTFDNPRVGAIIVQNNQIIATGHHEAFGQAHAEINAFNHLKDKKSN 66
>gi|290890962|ref|ZP_06554026.1| hypothetical protein AWRIB429_1416 [Oenococcus oeni AWRIB429]
gi|290479361|gb|EFD88021.1| hypothetical protein AWRIB429_1416 [Oenococcus oeni AWRIB429]
Length = 156
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
FM AL+ ++ G + ++VKD VI HAE +E
Sbjct: 9 EEFMQLALKQAQTAFDEGEV----PIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIE 64
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + +VT+EPC
Sbjct: 65 GANRSLGDWRLNDCSLFVTIEPCVMC 90
>gi|297582994|ref|YP_003698774.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
gi|297141451|gb|ADH98208.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
Length = 147
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
+++ +M A+ +R + N L+VKDG V+ TA H E+
Sbjct: 1 MANTHEYWMRQAIELARASK--IAGNDPFGALLVKDGEVVMTATNQIHTATDPTHHPEIV 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
+ + + + T Y + EPC
Sbjct: 59 LVRDYCRQEGITDLKDVTLYTSCEPCVMCS 88
>gi|225451245|ref|XP_002276494.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|298204906|emb|CBI34213.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
D +F++AA+ + V ++V + V+ T HAEV A+
Sbjct: 29 DRDYKFLTAAVEEAYKGV-ECGDGGPFGAVVVHNDEVLVSCHNMVLTNTDPTAHAEVTAI 87
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 88 REACKKLNQIELSDCEIYASCEPCPMC 114
>gi|222053168|ref|YP_002535530.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. FRC-32]
gi|221562457|gb|ACM18429.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. FRC-32]
Length = 161
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFM--SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPH 54
M + DA +M + A G + +IV+DG +I RG G H
Sbjct: 1 MAIERDDAFWMGKAIAQAEKAAARGEV----PIGAVIVRDGKIIARGHNLREGMQDPSAH 56
Query: 55 AEVQALEE-AGE----EARGATAYVTLEPCSHY 82
AE+ A+ A + G T YVTLEPC
Sbjct: 57 AELIAIRRGAKKNGNWRLLGTTLYVTLEPCLMC 89
>gi|190407280|gb|EDV10547.1| DRAP deaminase [Saccharomyces cerevisiae RM11-1a]
Length = 591
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
R+M A++ + G T T SV ++V V+ G + G HAE AL + +
Sbjct: 435 HRRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRQLPGNTHAEQCALIKYSQ 493
Query: 66 EARGA--------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
Y T+EPCS G P C + + G V
Sbjct: 494 LHPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVF 540
>gi|119480441|ref|XP_001260249.1| deoxycytidylate deaminase [Neosartorya fischeri NRRL 181]
gi|119408403|gb|EAW18352.1| deoxycytidylate deaminase [Neosartorya fischeri NRRL 181]
Length = 362
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++V++ VI G GGCP
Sbjct: 188 NWDLYFMQLASLAAQRSNCMKR---RVGCVLVRERRVISTGYNGTPRHLTNCNEGGCPRC 244
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E G+ Y PC
Sbjct: 245 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGSILYCDTCPCLTC 291
>gi|332800033|ref|YP_004461532.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp.
Re1]
gi|332697768|gb|AEE92225.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp.
Re1]
Length = 138
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 29/102 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D F+ A + T V ++VKD + G G G P
Sbjct: 4 DWDKYFLEIAFKVRERS---TCPRLQVGAVVVKDNRIKGTGY---NGSPSGMDHCDDVGC 57
Query: 54 -----------HAEVQALEEAG-EEARGATAYVTLEPCSHYG 83
HAEV AL E EE +GAT YVT PC+
Sbjct: 58 MIRGNHCVRTIHAEVNALLECSPEERKGATIYVTARPCAECS 99
>gi|313894545|ref|ZP_07828109.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella sp. oral taxon 158 str. F0412]
gi|313440941|gb|EFR59369.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Veillonella sp. oral taxon 158 str. F0412]
Length = 159
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWDEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|311741106|ref|ZP_07714931.1| cytidine and deoxycytidylate deaminase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303908|gb|EFQ79986.1| cytidine and deoxycytidylate deaminase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 143
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH-VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL ++ G V ++ G + GV HAEV+A+ +A
Sbjct: 1 MRRALDVAKRAPAGDV----PVGAVLYDAAGTELATGVNRREELADPTAHAEVEAIRQAV 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G G VTLEPC+
Sbjct: 57 RVHGDGWRLSGCELVVTLEPCAMC 80
>gi|57642192|ref|YP_184670.1| deoxycytidylate deaminase [Thermococcus kodakarensis KOD1]
gi|57160516|dbj|BAD86446.1| deoxycytidylate deaminase [Thermococcus kodakarensis KOD1]
Length = 178
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 24 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRGMDHCIDVGCLI 77
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 78 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 118
>gi|332883144|gb|EGK03427.1| hypothetical protein HMPREF9456_01494 [Dysgonomonas mossii DSM
22836]
Length = 149
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A ++ V LIVKD ++I G G P
Sbjct: 9 LDERYMRMAAIWAENSYCKRRK---VGALIVKDKMIISDGY---NGTPSGFENICEDENN 62
Query: 54 -------HAEVQALEEAG---EEARGATAYVTLEPCSHY 82
HAE A+ + + GAT YVT PC
Sbjct: 63 ETKAYVLHAEANAITKVACSHNSSLGATMYVTTSPCIEC 101
>gi|320037881|gb|EFW19817.1| deoxycytidylate deaminase [Coccidioides posadasii str. Silveira]
Length = 352
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D FM A ++ + V C++VKD V+ G GGCP
Sbjct: 187 SWDEYFMQLASLAAQRSNCMKR---RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRC 243
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E G Y PC
Sbjct: 244 NLVQGTAQALSTCLCLHAEENALLEAGRERIGEGCILYCNTCPCLTCS 291
>gi|302392959|ref|YP_003828779.1| CMP/dCMP deaminase zinc-binding protein [Acetohalobium arabaticum
DSM 5501]
gi|302205036|gb|ADL13714.1| CMP/dCMP deaminase zinc-binding protein [Acetohalobium arabaticum
DSM 5501]
Length = 159
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM ++ L V L+VK+G V+ G
Sbjct: 16 SWDQYFMELTSVVAKRSTCLRRK---VGALLVKEGRVLATGYNGAPSGLKHCSETGCIRE 72
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 73 ERNIPSGQRHELCRGLHAEQNAIIQAALHGTSIDGATLYCTHQPCVVCAKM 123
>gi|297155044|gb|ADI04756.1| bifunctional deaminase-reductase-like protein [Streptomyces
bingchenggensis BCW-1]
Length = 361
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
G+ + + E +I YL + ++ S D I + +TG +
Sbjct: 33 GLRWRQEVSPEVRILTDRYLPLCLAGPRLAVAQLGQSLDGFIATRTGDADYVTGEEDRAH 92
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
+H LRA DA++VG GT +ADDP+LT R +P+R++LDPH ++ ++
Sbjct: 93 LHHLRALVDAVVVGAGTAVADDPQLTVR--ACTGTNPVRVVLDPHGRVPSQRRVFIDGSA 150
Query: 243 APVIIVTENDDP--------------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ +V + L + + + + LL L RG+
Sbjct: 151 PTLWVVAADSGRGGENGSVGVDGSGRHRGLGAHVDVLTLPDRAAFEPRSLLDALARRGLG 210
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC---VRRDY 345
+L+EGG F++ R +D + + + +++G G+P G +RR +
Sbjct: 211 RVLIEGGGVTVSRFLHQRALDRLYVTVAPVLLG-DGVPGLRFAGTSVMRDALRPPMRRAH 269
Query: 346 FGSDVCLE 353
G D E
Sbjct: 270 LGEDTLFE 277
>gi|254519765|ref|ZP_05131821.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
gi|226913514|gb|EEH98715.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
Length = 164
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 36/112 (32%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--- 53
M + +D FM A+ + + V IV D ++ +G G P
Sbjct: 1 MKRNDYISWDEYFMGVAILAGKRSK---DPSTQVGACIVDNDNKILSQGY---NGLPRGC 54
Query: 54 ----------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YV L PC+
Sbjct: 55 SDDEFPWDREGHVLETKYPYVVHAELNAILNSRGTNLYGAKIYVALFPCNEC 106
>gi|115440135|ref|NP_001044347.1| Os01g0765000 [Oryza sativa Japonica Group]
gi|57899567|dbj|BAD87146.1| deoxycytidylate deaminase-like [Oryza sativa Japonica Group]
gi|113533878|dbj|BAF06261.1| Os01g0765000 [Oryza sativa Japonica Group]
gi|215678846|dbj|BAG95283.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 248
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 33/168 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------------- 50
S+D FM+ A ++ N V +V ++GI++G G +
Sbjct: 75 SWDDYFMAIAFLSAKRSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWAKK 131
Query: 51 ---GCP---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G P HAEV A+ A G YVT+ PC+ + +
Sbjct: 132 SAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVSEV 188
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
V D V + LS G+ V + +I + R
Sbjct: 189 IYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRN 236
>gi|120599757|ref|YP_964331.1| cytosine deaminase [Shewanella sp. W3-18-1]
gi|120559850|gb|ABM25777.1| Cytosine deaminase [Shewanella sp. W3-18-1]
Length = 145
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ AA+ ++ + + ++V DG ++ RG G HAE+ LE
Sbjct: 1 MDE-FLQAAIDEAKQGLAEGGI--PIGSVLVIDGNIVARGHNKRVQQGSAVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG + + T Y TL PC
Sbjct: 58 NAGRLSAADYQKGTLYSTLSPCDMCS 83
>gi|313768407|ref|YP_004062087.1| hypothetical protein MpV1_204 [Micromonas sp. RCC1109 virus MpV1]
gi|312599103|gb|ADQ91127.1| hypothetical protein MpV1_204 [Micromonas sp. RCC1109 virus MpV1]
Length = 145
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
S+D FM A S V C++VK+ +I G + G
Sbjct: 6 SWDEYFMQTAQLASVRSPCERLK---VGCVLVKNNRLISMGYNGFLGGCEHKSIVRDGHE 62
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G AYVT PC +
Sbjct: 63 QATIHAEINAITDAAKRGASIDDCVAYVTHYPCLNC 98
>gi|296455106|ref|YP_003662250.1| CMP/dCMP deaminase [Bifidobacterium longum subsp. longum JDM301]
gi|296184538|gb|ADH01420.1| CMP/dCMP deaminase, zinc-binding protein [Bifidobacterium longum
subsp. longum JDM301]
Length = 174
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 27 EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 83
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 84 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 143
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 144 DPHIGHSPEVHGG 156
>gi|23016531|ref|ZP_00056286.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
magnetotacticum MS-1]
Length = 145
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG----EEARGATAYVTLEPCSH 81
V ++V+DG +I R HAE+ A+ A + YVTLEPC
Sbjct: 22 PVGAVVVQDGRIIARAGNRVEELGDPTAHAEMLAIRAATVLGDKRLEDCDLYVTLEPC-- 79
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
P CA I IRR+ DP G +
Sbjct: 80 ----PMCAAAISLARIRRLYFGAYDPKSGGVEHGSKVFDHATCH 119
>gi|149248448|ref|XP_001528611.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448565|gb|EDK42953.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 271
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
S +FM+ AL + T VAC++ + +I G G HAE AL
Sbjct: 6 SQHFKFMAVALFVGYKALLKNET--PVACVVTRGCQIISIGYNHTNITLNGTKHAEFIAL 63
Query: 61 EEAGE--EARGATAYVTLEPCSHY 82
E + + T YVT+EPC
Sbjct: 64 GRLKEPVDYKNLTLYVTVEPCIMC 87
>gi|171690512|ref|XP_001910181.1| hypothetical protein [Podospora anserina S mat+]
gi|170945204|emb|CAP71315.1| unnamed protein product [Podospora anserina S mat+]
Length = 260
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI--- 325
+L++L +GV S++VEGG V +S + +RLVDS+I+ + +G+GG+
Sbjct: 167 RFKWGDVLSVLGEQGVRSVMVEGGGEVINSLLIDPENRLVDSVIITIAPTWLGKGGVVVS 226
Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
PS + + V G DV L
Sbjct: 227 PSRQQGQTSQLKLRDVSWQPHGEDVVL 253
>gi|257789865|ref|YP_003180471.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
gi|317489321|ref|ZP_07947835.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. 1_3_56FAA]
gi|325829718|ref|ZP_08163181.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. HGA1]
gi|257473762|gb|ACV54082.1| CMP/dCMP deaminase zinc-binding [Eggerthella lenta DSM 2243]
gi|316911566|gb|EFV33161.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. 1_3_56FAA]
gi|325488213|gb|EGC90645.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Eggerthella sp. HGA1]
Length = 167
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 23/97 (23%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK------------DGIVIGRGV----TAYG 50
D +M A+ +R L + ++V + VI R T
Sbjct: 3 DEDYMRMAIEEARRAEEL--DEVPIGAVVVYEPIDPGTRRPLAEPQVIARACNLRETTQD 60
Query: 51 GCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE AL++A E G T YVTLEPC
Sbjct: 61 PAGHAEFIALKQAAERLGVWRLTGCTVYVTLEPCVMC 97
>gi|168065799|ref|XP_001784834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663588|gb|EDQ50344.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 36/106 (33%), Gaps = 31/106 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVT--------------- 47
S+D FM+ A ++ N V IV VI G G
Sbjct: 13 SWDDYFMAIAFLSAKRSK---DPNRQVGACIVSQDRVILAGIGYNGFPRGCSDDQLPWAK 69
Query: 48 -AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
+ G P HAEV A+ + A G YVTL PC+
Sbjct: 70 KSQSGDPLQTKYPYVCHAEVNAILNKNHASASGQRLYVTLFPCNEC 115
>gi|156372900|ref|XP_001629273.1| predicted protein [Nematostella vectensis]
gi|156216269|gb|EDO37210.1| predicted protein [Nematostella vectensis]
Length = 208
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 34/107 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FMS A ++ + V IV K+ ++G G G P
Sbjct: 48 SWDDYFMSVAFLSAQRSK---DPSSQVGACIVNKERKIVGIGY---NGMPNGCSDDELPW 101
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + + +G T YV L PC+
Sbjct: 102 NRHADDELDTKYPYVCHAEMNAILNKNSADVKGCTVYVALFPCNECS 148
>gi|294781966|ref|ZP_06747298.1| deoxycytidylate deaminase [Fusobacterium sp. 1_1_41FAA]
gi|294481777|gb|EFG29546.1| deoxycytidylate deaminase [Fusobacterium sp. 1_1_41FAA]
Length = 160
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 32/105 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
+D+ FM AL S N V IV D ++G G G P
Sbjct: 7 DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGY---NGLPKGCEDTDFPW 60
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + + + YV L PC+
Sbjct: 61 EREGDFLETKYPYVCHAELNAILNSIKSLKDCIIYVALFPCNECS 105
>gi|228470550|ref|ZP_04055407.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
uenonis 60-3]
gi|228307677|gb|EEK16653.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
uenonis 60-3]
Length = 155
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
D R M AL+ + P + +I ++ + HAE+ A+
Sbjct: 11 LDERMMQLALQQALVA-YEADEVP-IGAVIAVGTRILAKSHNQVELLNDPTAHAEMLAIT 68
Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
+A G+ T YVT+EPC P C + I R+V DP
Sbjct: 69 QATAAIGGKYLPQCTLYVTVEPC------PMCMGALRWTQIGRIVYGAADPKGGYMRYSS 122
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLT 143
K +++ + E E + + +Y
Sbjct: 123 TLPHPKSVVMGGVCEEECRELMVSYFQ 149
>gi|242399255|ref|YP_002994679.1| Deoxycytidylate deaminase [Thermococcus sibiricus MM 739]
gi|242265648|gb|ACS90330.1| Deoxycytidylate deaminase [Thermococcus sibiricus MM 739]
Length = 180
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 30/101 (29%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVGLRA---TCPRLKVGAVAVKDGYILATGY---NGAPRNMDHCIDVGCLV 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|150951310|ref|XP_001387615.2| deoxycytidylate deaminase [Scheffersomyces stipitis CBS 6054]
gi|149388487|gb|EAZ63592.2| deoxycytidylate deaminase [Pichia stipitis CBS 6054]
Length = 341
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V +IV + VI G G P
Sbjct: 191 TWDSYFMRLADLAALRSNCMKR---RVGAVIVHENRVIATGY---NGTPRHLTNCNEGGC 244
Query: 54 -------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG + RG A Y PC
Sbjct: 245 DRCNKGSVGGTSLLTCLCLHAEENALLEAGRDRIRGEAVLYCNTCPCLTCS 295
>gi|153001599|ref|YP_001367280.1| cytosine deaminase [Shewanella baltica OS185]
gi|217972471|ref|YP_002357222.1| Cytosine deaminase [Shewanella baltica OS223]
gi|151366217|gb|ABS09217.1| Cytosine deaminase [Shewanella baltica OS185]
gi|217497606|gb|ACK45799.1| Cytosine deaminase [Shewanella baltica OS223]
Length = 145
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F++AA+ ++ + + ++V DG ++GRG G HAE+ LE
Sbjct: 1 MDE-FLAAAIEEAKQGLAEGGI--PIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG E + AT Y TL PC
Sbjct: 58 NAGRFSAAEYQRATLYSTLSPCDMCS 83
>gi|197119397|ref|YP_002139824.1| deoxycytidylate deaminase [Geobacter bemidjiensis Bem]
gi|253699854|ref|YP_003021043.1| dCMP deaminase [Geobacter sp. M21]
gi|197088757|gb|ACH40028.1| deoxycytidylate deaminase [Geobacter bemidjiensis Bem]
gi|251774704|gb|ACT17285.1| dCMP deaminase [Geobacter sp. M21]
Length = 151
Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D F+ ++ T V ++VKD ++ G
Sbjct: 1 MGRPSWDEYFIEITRLVAKRS---TCLRRQVGAVLVKDKNILATGYNGAPSGTAHCLDIG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y PC +
Sbjct: 58 CLREKMGIPSGERHELCRGLHAEQNAIIQAAKHGTSIEGATLYCNTMPCIICSKM 112
>gi|124008183|ref|ZP_01692880.1| cytosine deaminase [Microscilla marina ATCC 23134]
gi|123986282|gb|EAY26104.1| cytosine deaminase [Microscilla marina ATCC 23134]
Length = 154
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 6 FDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D +M A + + G V ++V +I R HAE+ A
Sbjct: 2 HDEFYMQQAYKEAVIAYNKGEI----PVGAVVVVQDKIIARAHNQTEQLLDVTAHAEILA 57
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ A + T YVTLEPC
Sbjct: 58 VTGAANYLGAKYLNQCTMYVTLEPCVMC 85
>gi|319760657|ref|YP_004124595.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia vafer
str. BVAF]
gi|318039371|gb|ADV33921.1| tRNA-specific adenosine deaminase [Candidatus Blochmannia vafer
str. BVAF]
Length = 155
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
D +M A+ + S N ++ ++V DG ++G G A + HAE+ AL
Sbjct: 6 DMDIIWMRYAITLASVAAL--SGNVAIGAVLVYDGRLVGYGYNAALIFHDPSAHAEIIAL 63
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
G T YVT+EPC
Sbjct: 64 RVGGNYLGNYRLLNTTLYVTMEPCIMC 90
>gi|134045717|ref|YP_001097203.1| cytosine deaminase [Methanococcus maripaludis C5]
gi|132663342|gb|ABO34988.1| Cytosine deaminase [Methanococcus maripaludis C5]
Length = 145
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65
F+ AL+ ++ + + ++V +IGRG HAE+ ALE AG
Sbjct: 4 FIDEALKEAKLGLEEGGI--PIGAVLVYKNEIIGRGHNRRVQNNSAILHAEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
+ Y TL PC
Sbjct: 62 LTSDVYKNCELYTTLSPCIMCS 83
>gi|313896633|ref|ZP_07830182.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas sp. oral taxon 137 str. F0430]
gi|320529093|ref|ZP_08030185.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas artemidis F0399]
gi|312974818|gb|EFR40284.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas sp. oral taxon 137 str. F0430]
gi|320138723|gb|EFW30613.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Selenomonas artemidis F0399]
Length = 156
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEV 57
D + M AL + +G + +++ G ++ G HAE+
Sbjct: 2 PDDVKGMRLALAEAERAYALGEV----PIGAVVMDGAGNIVSTGHNLRESEHDATAHAEL 57
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFII 93
A+ A G T YVT+EPC + ++
Sbjct: 58 IAIRRACRALGRWRLTGMTLYVTIEPCPMCAGAIVMSRISR 98
>gi|228476125|ref|ZP_04060833.1| ComE operon protein 2 [Staphylococcus hominis SK119]
gi|314936291|ref|ZP_07843638.1| ComE operon protein 2 [Staphylococcus hominis subsp. hominis C80]
gi|228269948|gb|EEK11428.1| ComE operon protein 2 [Staphylococcus hominis SK119]
gi|313654910|gb|EFS18655.1| ComE operon protein 2 [Staphylococcus hominis subsp. hominis C80]
Length = 154
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M +D FM+ + + T SV IVKD +I G + G
Sbjct: 1 MDRIKWDEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDVG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + AT YVT PC +
Sbjct: 58 CLIEDDHCIRTIHAEMNALLQCAKQGVSSDNATIYVTHFPCLNC 101
>gi|224541417|ref|ZP_03681956.1| hypothetical protein CATMIT_00579 [Catenibacterium mitsuokai DSM
15897]
gi|224525663|gb|EEF94768.1| hypothetical protein CATMIT_00579 [Catenibacterium mitsuokai DSM
15897]
Length = 159
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A + N V IV D ++G G G P
Sbjct: 7 TWDQYFMGVAKLSAYRSK---DPNTQVGACIVNNDNRIVGVGY---NGLPRGCEDDKFPW 60
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + ++ + YV+L PC
Sbjct: 61 SVREGALYDTKYPYVVHAELNAILNSTQKLQDCRIYVSLFPCHEC 105
>gi|104774442|ref|YP_619422.1| cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514541|ref|YP_813447.1| cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423523|emb|CAI98425.1| Cytosine/adenosine deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093856|gb|ABJ59009.1| tRNA-adenosine deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325126252|gb|ADY85582.1| Cytidine-deoxycytidylate deaminase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 169
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG +IGRG G HAE+ A++EA ++ +VTLEPC
Sbjct: 28 PIGAVVVGPDGQIIGRGYNRRELDEDGTAHAEILAIKEACQKLDSWRLIDCNLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|86157977|ref|YP_464762.1| zinc-binding CMP/dCMP deaminase [Anaeromyxobacter dehalogenans
2CP-C]
gi|197122718|ref|YP_002134669.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
gi|220917501|ref|YP_002492805.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
2CP-1]
gi|85774488|gb|ABC81325.1| zinc-binding CMP/dCMP deaminase [Anaeromyxobacter dehalogenans
2CP-C]
gi|196172567|gb|ACG73540.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
gi|219955355|gb|ACL65739.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
2CP-1]
Length = 164
Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 25/98 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG---- 51
S+D FM+ A + T V ++V+D ++ G + G
Sbjct: 6 SWDEYFMNVARVVATRA---TCDRKHVGAVLVRDKTILSTGYNGSIRGLPHCSEAGHMME 62
Query: 52 ------CPHAEVQALEEAGEE---ARGATAYVTLEPCS 80
HAE A+ +A + GA+ Y T PC
Sbjct: 63 DGHCVATVHAEANAIIQAAKNGVAIEGASIYTTASPCW 100
>gi|227547038|ref|ZP_03977087.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
subsp. infantis ATCC 55813]
gi|227212455|gb|EEI80344.1| cytidine and deoxycytidylate deaminase [Bifidobacterium longum
subsp. infantis ATCC 55813]
Length = 177
Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 30 EYDEA-MRRALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 86
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 87 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 146
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 147 DPHIGHSPEVHGG 159
>gi|188583522|ref|YP_001926967.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
gi|179347020|gb|ACB82432.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
Length = 147
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V+DG V+ HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAVVVRDGAVLAVASNRPRALSDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|326330934|ref|ZP_08197234.1| guanine deaminase [Nocardioidaceae bacterium Broad-1]
gi|325951292|gb|EGD43332.1| guanine deaminase [Nocardioidaceae bacterium Broad-1]
Length = 159
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D ++ A+ + +V +I++DGI++G G HAE+ A+
Sbjct: 3 DTMWLEQAVALAVRNVNNGGG--PFGAIILRDGILLGTGQNRVTRDLDPSAHAEIVAIRS 60
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G T Y + EPC
Sbjct: 61 ACKEADSFSLAGCTLYTSCEPCPMC 85
>gi|51891149|ref|YP_073840.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
14863]
gi|51854838|dbj|BAD38996.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM
14863]
Length = 152
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D FM AAL + +G + +IV+D ++ R HAEV A+
Sbjct: 3 DEAFMRAALAEAEKAARLGEV----PIGAVIVRDSEILVRTHNLRETTHDATAHAEVLAI 58
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EAG G T YVT+EPC
Sbjct: 59 REAGRLLGGWRLTGCTLYVTIEPCPMC 85
>gi|302307964|ref|NP_984770.2| AEL091Cp [Ashbya gossypii ATCC 10895]
gi|299789245|gb|AAS52594.2| AEL091Cp [Ashbya gossypii ATCC 10895]
Length = 609
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEA 63
FM A+ ++ T+ SV ++V ++ G + G HAE AL++
Sbjct: 460 EQHGDFMRLAIEQAKK-CPPAKTSFSVGAVLVNGTEILATGYSRELEGNTHAEQCALQKY 518
Query: 64 GEEAR------GATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
E+ + G Y T+EPCS G P + I + G V
Sbjct: 519 FEQHKTDKVPIGTVIYTTMEPCSLRLSGNKPCVERIICQQGNITAVF 565
>gi|289550640|ref|YP_003471544.1| dCMP deaminase ; Late competence protein ComEB [Staphylococcus
lugdunensis HKU09-01]
gi|315658135|ref|ZP_07911007.1| ComE operon protein comEB [Staphylococcus lugdunensis M23590]
gi|289180172|gb|ADC87417.1| dCMP deaminase ; Late competence protein ComEB [Staphylococcus
lugdunensis HKU09-01]
gi|315496464|gb|EFU84787.1| ComE operon protein comEB [Staphylococcus lugdunensis M23590]
Length = 153
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|262067377|ref|ZP_06026989.1| putative deoxycytidylate deaminase [Fusobacterium periodonticum
ATCC 33693]
gi|291378940|gb|EFE86458.1| putative deoxycytidylate deaminase [Fusobacterium periodonticum
ATCC 33693]
Length = 160
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 32/105 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
+D+ FM AL S N V IV D ++G G G P
Sbjct: 7 DWDSYFMGIALLSSMRSK---DPNTQVGACIVNEDKRIVGVGY---NGLPKGCEDTDFPW 60
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + + + YV L PC+
Sbjct: 61 EREGDFLETKYPYVCHAELNAILNSIKSLKDCVIYVALFPCNECS 105
>gi|302697295|ref|XP_003038326.1| hypothetical protein SCHCODRAFT_63904 [Schizophyllum commune
H4-8]
gi|300112023|gb|EFJ03424.1| hypothetical protein SCHCODRAFT_63904 [Schizophyllum commune
H4-8]
Length = 194
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ ++M+ A+ ++ + G V C+ V+D +I HAE
Sbjct: 1 MEEVHLKWMAEAMNMAQEALDAGEV----PVGCIFVRDNKIIASARNRTNELRNATRHAE 56
Query: 57 VQALEEAGEE-----------ARGATAYVTLEPCSHY 82
++A++ + T YVT+EPC
Sbjct: 57 LEAIDRILADKTLTPEICEYPLDTTTLYVTVEPCIMC 93
>gi|219557313|ref|ZP_03536389.1| bifunctional riboflavin biosynthesis protein ribG:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
[Mycobacterium tuberculosis T17]
gi|289569426|ref|ZP_06449653.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
T17]
gi|289543180|gb|EFD46828.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis
T17]
Length = 91
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP- 326
+ + ++L L R T +L+EGG +A +F+ + ++ I+ Y + I++G
Sbjct: 1 MMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAYVAPILLGGPVTAV 58
Query: 327 --SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ + + G D+ L +
Sbjct: 59 DDVGVSNITNALRWQFDSVEKVGPDLLLSLV 89
>gi|315230719|ref|YP_004071155.1| dCMP deaminase [Thermococcus barophilus MP]
gi|315183747|gb|ADT83932.1| dCMP deaminase [Thermococcus barophilus MP]
Length = 181
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRGMDHCIDVGCLI 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|19113234|ref|NP_596442.1| deoxycytidylate deaminase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74626715|sp|O43012|DCTD_SCHPO RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|2956780|emb|CAA17893.1| deoxycytidylate deaminase (predicted) [Schizosaccharomyces pombe]
Length = 348
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D+ FM A ++ + V C++V+ VI G GGCP
Sbjct: 199 SWDSYFMEMASLAAKRSNCMKR---RVGCVLVRGNRVIATGYNGTPRGATNCNEGGCPRC 255
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E A Y PC
Sbjct: 256 NSASSCGKELDTCLCLHAEENALLEAGRERVGNNAILYCDTCPCLTCS 303
>gi|323142068|ref|ZP_08076916.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Phascolarctobacterium sp. YIT 12067]
gi|322413455|gb|EFY04326.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Phascolarctobacterium sp. YIT 12067]
Length = 166
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 17/90 (18%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D ++M AL +R +G + ++ G VI HAEV
Sbjct: 3 DKKYMQLALAEARKAAELGEI----PIGAVLADMTTGEVIAAAHNMRETWHDATAHAEVI 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
+ EA E G YVT+EPC
Sbjct: 59 VIREACERLGRWRLSGCALYVTVEPCPMCS 88
>gi|238026935|ref|YP_002911166.1| CMP/dCMP deaminase, zinc-binding [Burkholderia glumae BGR1]
gi|237876129|gb|ACR28462.1| CMP/dCMP deaminase, zinc-binding [Burkholderia glumae BGR1]
Length = 202
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+ VI RG HAE+ AL EA G YVTLEPC
Sbjct: 53 PVGAVLVRGDQVIARGFNHPISGHDPSAHAEMAALREAAHTLGNYRLPGCELYVTLEPCL 112
Query: 81 HYGRSPP 87
+
Sbjct: 113 MCSGAIM 119
>gi|46203751|ref|ZP_00051027.2| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
magnetotacticum MS-1]
Length = 152
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V+DG+V+G HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAVVVRDGVVLGVAGNRPRALSDPTAHAEILAIRAACTALQDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|197117867|ref|YP_002138294.1| zinc-dependent cytosine deaminase [Geobacter bemidjiensis Bem]
gi|197087227|gb|ACH38498.1| zinc-dependent cytosine deaminase [Geobacter bemidjiensis Bem]
Length = 145
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
+M +A+ ++ +G + ++V G+++GRG G H E+ ALE AG
Sbjct: 4 YMQSAIEEAKKGLGEGGI--PIGSVLVHKGLILGRGHNRRVQKGSSILHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYG 83
R + Y TL PCS
Sbjct: 62 LPAQVYRESVLYTTLSPCSMCS 83
>gi|255534332|ref|YP_003094703.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
gi|255340528|gb|ACU06641.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10]
Length = 141
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 28/105 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + FD ++ A+ +++ V LIVKD ++I G G P
Sbjct: 1 MEPTKFDFAYLKMAMEWAKLSHCERRK---VGALIVKDRMIISDGY---NGTPSGFENCC 54
Query: 54 ------------HAEVQALEE---AGEEARGATAYVTLEPCSHYG 83
HAE A+ + + + A+ AT Y+TL PC
Sbjct: 55 EDSEGKTHWYVLHAEANAILKLAGSTQSAKDATLYLTLSPCRDCS 99
>gi|326332013|ref|ZP_08198298.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
gi|325950151|gb|EGD42206.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
Length = 222
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 42/106 (39%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+++ ++ D + + + + ++N+ ++ DL LLT
Sbjct: 88 IVVVSRRGRVPEDLRGCEPGAVRLATVAEAPGLDAARDEIGEENVYVVGTSEVDLPALLT 147
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
L G+ +L EGG ++ S + + LVD + + ++ G
Sbjct: 148 RLHEEGLRHVLCEGGPSLLGSLLEAGLVDELCHTITPKLLAGDGRR 193
>gi|210076069|ref|XP_505753.2| YALI0F22517p [Yarrowia lipolytica]
gi|199424977|emb|CAG78564.2| YALI0F22517p [Yarrowia lipolytica]
Length = 150
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQAL 60
DA++M+ A+ + + ++V DG V+G+G G H E+ AL
Sbjct: 4 DDAKYMAMAIEQATKSKNEGGI--PIGAVLVAGDGTVLGKGHNRRIQHGSAVHHGEIDAL 61
Query: 61 EEAGEEA----RGATAYVTLEPCSHYGRSPPCA 89
+ AG A + AT Y TL PC +
Sbjct: 62 QNAGRLAGKVYKDATMYTTLSPCDMCTGACIMF 94
>gi|157104304|ref|XP_001648345.1| deoxycytidylate deaminase [Aedes aegypti]
gi|108869217|gb|EAT33442.1| deoxycytidylate deaminase [Aedes aegypti]
Length = 197
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 33/171 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYG----------GCP 53
++ FM+ A +R N V IV + ++G G + G
Sbjct: 23 DWNEYFMATAFLAARRSK---DPNTQVGACIVNEERKIVGVGYNGFPLGCSDDEFPWGKA 79
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE+ A+ + + + T YV L PC + I
Sbjct: 80 SLDPLGTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPC-----NECAKIIIQSKIKEV 134
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
+ + + + GI + + S+ +I +
Sbjct: 135 IYMSDKHAHKNTTIAAKKMFDAAGIKYWQFVPSKSRIVIDFSEIDWDNLNQ 185
>gi|312796599|ref|YP_004029521.1| tRNA-specific adenosine deaminase [Burkholderia rhizoxinica HKI
454]
gi|312168374|emb|CBW75377.1| tRNA-specific adenosine deaminase (EC 3.5.4.-) [Burkholderia
rhizoxinica HKI 454]
Length = 173
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ VI +G HAE+ AL A + G YVTLEPC
Sbjct: 36 PVGAVVVRGDEVIAQGFNQPISTHDPSAHAEMVALRAAAQSLSNYRMPGCELYVTLEPCL 95
Query: 81 HY 82
Sbjct: 96 MC 97
>gi|260432946|ref|ZP_05786917.1| tRNA-specific adenosine deaminase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416774|gb|EEX10033.1| tRNA-specific adenosine deaminase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 156
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEAG 64
M AL + G P V +IV DG +I R + HAE+ AL A
Sbjct: 6 HMDKALEQA-RAAGDRGEVP-VGAVIVSPDGRIIAADGNRTRELHDPTAHAEILALRAAC 63
Query: 65 -----EEARGATAYVTLEP 78
E G YVTLEP
Sbjct: 64 RAVGSERLTGHDLYVTLEP 82
>gi|257437839|ref|ZP_05613594.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
A2-165]
gi|257199499|gb|EEU97783.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii
A2-165]
Length = 168
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M + +D FM AL + + V IV + ++ G
Sbjct: 10 MKRTDYINWDEYFMGIALLTAMRSK---DPSSQVGACIVSPENKILSLGYNGMPIGCDDD 66
Query: 48 ----AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ A +GA YVTL PC+
Sbjct: 67 AMPWEREGDPLDTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNEC 115
>gi|309806673|ref|ZP_07700669.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 03V1-b]
gi|308166978|gb|EFO69161.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus iners LactinV 03V1-b]
Length = 148
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A + G + +IV +G +IGRG HAE+ A++EA
Sbjct: 1 MKLAFLEADKAEQQGEI----PIGAVIVDAEGNLIGRGYNRRELDEDATRHAEIIAIQEA 56
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ + +VTLEPC
Sbjct: 57 CKNLNSWRLIDCSLFVTLEPCPMC 80
>gi|268574528|ref|XP_002642242.1| Hypothetical protein CBG18226 [Caenorhabditis briggsae]
gi|187025244|emb|CAP35711.1| hypothetical protein CBG_18226 [Caenorhabditis briggsae AF16]
Length = 168
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAE 56
+ M+ A+ + V +IV + G V+ +G HAE
Sbjct: 9 SLPPNHKELMAEAVAEACRGV-ECGDGGPFGAVIVDNKGNVVAKGHNMVLVTKDPTMHAE 67
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A + + G T Y + PC
Sbjct: 68 MTAIRNACKTLGTFDLSGHTLYTSCYPCPMC 98
>gi|327400004|ref|YP_004340843.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
SNP6]
gi|327315512|gb|AEA46128.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus
SNP6]
Length = 159
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 43/156 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
D FM A + L V LIVKD ++ G G P
Sbjct: 8 DLDHYFMEIARVVASRSTCLRQK---VGALIVKDKRILATGYNGAPSGLPHCLEIGCLRK 64
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
HAE A+ +A G G T Y T +PC CA+ II
Sbjct: 65 ELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIVGGTLYTTHQPCI------MCAKMIIN 118
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
GI++VV D R GL++L + GI V M
Sbjct: 119 AGIKKVVYGRRYADGR----GLEFLKEAGIEVVYMP 150
>gi|256372768|ref|YP_003110592.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
10331]
gi|256009352|gb|ACU54919.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM
10331]
Length = 156
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+S+ D R++ A + T+ P V ++V+ G V+G HAE+
Sbjct: 2 LSADDRRWLDVAFGLAEDAA-RTAEVP-VGAVVVRSGRVLGARHNETIERRSSLAHAELL 59
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
AL +A +A GA YVTLEPC+
Sbjct: 60 ALSDALADAGDGYVLGADVYVTLEPCAMC 88
>gi|223938524|ref|ZP_03630416.1| Cytosine deaminase [bacterium Ellin514]
gi|223892786|gb|EEF59255.1| Cytosine deaminase [bacterium Ellin514]
Length = 145
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GC--PHAEVQALEEAGE 65
F+ AA+ ++ + + ++V +G +IGRG G HAE+ LE +G
Sbjct: 4 FLQAAIEEAKKGLAAGGI--PIGSVLVYEGKIIGRGHNQRVQHGSVIHHAEMNCLENSGR 61
Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
+ + T Y TL PC + + V + VR
Sbjct: 62 QKASVYQKCTLYSTLSPCPMCSGAALLYKIPHVIVGENVTFQGPEAYVRSQ 112
>gi|170744112|ref|YP_001772767.1| CMP/dCMP deaminase zinc-binding [Methylobacterium sp. 4-46]
gi|168198386|gb|ACA20333.1| CMP/dCMP deaminase zinc-binding [Methylobacterium sp. 4-46]
Length = 158
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V IV+DG V+ T HAE+ A+ A E G YVTLEPC
Sbjct: 33 PVGAAIVRDGTVLAVAGNRPRTLRDPTAHAEILAIRAACRAIGDERLIGCDLYVTLEPCG 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|49483836|ref|YP_041060.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257425713|ref|ZP_05602137.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428374|ref|ZP_05604772.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431011|ref|ZP_05607391.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
68-397]
gi|257433699|ref|ZP_05610057.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
E1410]
gi|257436613|ref|ZP_05612657.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M876]
gi|282904170|ref|ZP_06312058.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C160]
gi|282905997|ref|ZP_06313852.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908908|ref|ZP_06316726.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911226|ref|ZP_06319028.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914395|ref|ZP_06322181.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M899]
gi|282919364|ref|ZP_06327099.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C427]
gi|282924689|ref|ZP_06332357.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C101]
gi|283958352|ref|ZP_06375803.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293503469|ref|ZP_06667316.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 58-424]
gi|293510486|ref|ZP_06669192.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M809]
gi|293531026|ref|ZP_06671708.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M1015]
gi|49241965|emb|CAG40660.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257271407|gb|EEV03553.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275215|gb|EEV06702.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278441|gb|EEV09077.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
68-397]
gi|257281792|gb|EEV11929.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
E1410]
gi|257283964|gb|EEV14087.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M876]
gi|282313524|gb|EFB43919.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C101]
gi|282317174|gb|EFB47548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C427]
gi|282321576|gb|EFB51901.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M899]
gi|282324921|gb|EFB55231.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327172|gb|EFB57467.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331289|gb|EFB60803.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595788|gb|EFC00752.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus C160]
gi|283790501|gb|EFC29318.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920294|gb|EFD97360.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M1015]
gi|291095135|gb|EFE25400.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 58-424]
gi|291466850|gb|EFF09370.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus M809]
gi|315195491|gb|EFU25878.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00]
Length = 153
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|332638741|ref|ZP_08417604.1| dCMP deaminase [Weissella cibaria KACC 11862]
Length = 161
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP-------------- 53
FM A + T T V ++VKDG +I G + G P
Sbjct: 11 YFMMQAAMLASRS---TCTRLHVGAVVVKDGRIIASGYNGSVTGTPHCTEVGDLLVDGHC 67
Query: 54 ----HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A L + G A GA YVT PC H
Sbjct: 68 IRAVHAEQNALMQLAKMGIAAEGAEIYVTDFPCVHC 103
>gi|18977970|ref|NP_579327.1| dCMP deaminase [Pyrococcus furiosus DSM 3638]
gi|18893746|gb|AAL81722.1| dCMP deaminase [Pyrococcus furiosus DSM 3638]
Length = 185
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRSMDHCIDKGCIL 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VNGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|78188173|ref|YP_378511.1| cytosine deaminase, putative [Chlorobium chlorochromatii CaD3]
gi|78170372|gb|ABB27468.1| tRNA-adenosine deaminase [Chlorobium chlorochromatii CaD3]
Length = 153
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA- 63
FMSAALR + V +++ +G +IGRG + HAE+ AL A
Sbjct: 7 FMSAALREAIKAYEQREV--PVGAVVLDSNGHIIGRGHNQVETLHDATAHAEMIALTAAM 64
Query: 64 ----GEEARGATAYVTLEPCSHY 82
+ T VT+EPC
Sbjct: 65 ATLGNKYLDDCTLAVTMEPCPMC 87
>gi|27376394|ref|NP_767923.1| hypothetical protein blr1283 [Bradyrhizobium japonicum USDA 110]
gi|27349534|dbj|BAC46548.1| blr1283 [Bradyrhizobium japonicum USDA 110]
Length = 236
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + GV LLVEGG +F+ + L+D L S V G G P +
Sbjct: 140 ALDILNHELGVKRLLVEGGGVANGAFLRAGLIDEFNLILSPAVDGASGAPFVFSSTEADS 199
Query: 337 N-------FMCVRRDYFGSDV-CLEYIGKN 358
+ GS V L Y+ KN
Sbjct: 200 DKRAPLAAMTLEGVRELGSGVLLLRYLIKN 229
>gi|323507722|emb|CBQ67593.1| related to TAD2-tRNA-specific adenosine deaminase 2 [Sporisorium
reilianum]
Length = 1276
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 27/105 (25%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
S D ++M AL ++ + + P V + V+ G VI RG HAE++A
Sbjct: 939 SEEDLKWMREALAMAQEAL-EANEVP-VGGVFVRKGQVIARGRNRTNELLNATRHAELEA 996
Query: 60 LEEA--------------------GEEA-RGATAYVTLEPCSHYG 83
++ G+ + T YVT+EPC G
Sbjct: 997 IDHILSIMPPSAPDFAVAPHSGPEGDNPFKDTTLYVTIEPCIMCG 1041
>gi|15924579|ref|NP_372113.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus Mu50]
gi|15927169|ref|NP_374702.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus subsp. aureus N315]
gi|21283269|ref|NP_646357.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus subsp. aureus MW2]
gi|49486423|ref|YP_043644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
gi|82751191|ref|YP_416932.1| late competence deaminase protein [Staphylococcus aureus RF122]
gi|151221703|ref|YP_001332525.1| competence protein ComEB required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156979907|ref|YP_001442166.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus Mu3]
gi|255006374|ref|ZP_05144975.2| competence protein ComEB [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257793665|ref|ZP_05642644.1| ComE operon protein 2 [Staphylococcus aureus A9781]
gi|258411036|ref|ZP_05681316.1| competence protein ComEB [Staphylococcus aureus A9763]
gi|258420161|ref|ZP_05683116.1| ComE operon protein 2 [Staphylococcus aureus A9719]
gi|258424016|ref|ZP_05686898.1| ComE operon protein 2 [Staphylococcus aureus A9635]
gi|258437420|ref|ZP_05689404.1| competence protein ComEB [Staphylococcus aureus A9299]
gi|258443626|ref|ZP_05691965.1| competence protein ComEB [Staphylococcus aureus A8115]
gi|258446834|ref|ZP_05694988.1| competence protein ComEB [Staphylococcus aureus A6300]
gi|258448748|ref|ZP_05696860.1| competence protein ComEB [Staphylococcus aureus A6224]
gi|258450583|ref|ZP_05698645.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus A5948]
gi|258453565|ref|ZP_05701543.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus A5937]
gi|262048588|ref|ZP_06021471.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus D30]
gi|262051247|ref|ZP_06023471.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus 930918-3]
gi|282893090|ref|ZP_06301324.1| ComE operon protein 2 [Staphylococcus aureus A8117]
gi|282916859|ref|ZP_06324617.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus D139]
gi|282920137|ref|ZP_06327862.1| ComE operon protein 2 [Staphylococcus aureus A9765]
gi|282928222|ref|ZP_06335827.1| ComE operon protein 2 [Staphylococcus aureus A10102]
gi|283770664|ref|ZP_06343556.1| dCMP deaminase [Staphylococcus aureus subsp. aureus H19]
gi|296276607|ref|ZP_06859114.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MR1]
gi|13701387|dbj|BAB42681.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus subsp. aureus N315]
gi|14247360|dbj|BAB57751.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus Mu50]
gi|21204709|dbj|BAB95405.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus subsp. aureus MW2]
gi|49244866|emb|CAG43327.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476]
gi|82656722|emb|CAI81150.1| late competence deaminase protein [Staphylococcus aureus RF122]
gi|150374503|dbj|BAF67763.1| competence protein ComEB required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156722042|dbj|BAF78459.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus subsp. aureus Mu3]
gi|257787637|gb|EEV25977.1| ComE operon protein 2 [Staphylococcus aureus A9781]
gi|257840186|gb|EEV64650.1| competence protein ComEB [Staphylococcus aureus A9763]
gi|257843872|gb|EEV68266.1| ComE operon protein 2 [Staphylococcus aureus A9719]
gi|257845637|gb|EEV69669.1| ComE operon protein 2 [Staphylococcus aureus A9635]
gi|257848625|gb|EEV72613.1| competence protein ComEB [Staphylococcus aureus A9299]
gi|257851032|gb|EEV74975.1| competence protein ComEB [Staphylococcus aureus A8115]
gi|257854409|gb|EEV77358.1| competence protein ComEB [Staphylococcus aureus A6300]
gi|257858026|gb|EEV80915.1| competence protein ComEB [Staphylococcus aureus A6224]
gi|257861741|gb|EEV84540.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus A5948]
gi|257864296|gb|EEV87046.1| late competence operon required for DNA binding and uptake
[Staphylococcus aureus A5937]
gi|259160884|gb|EEW45904.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus 930918-3]
gi|259163235|gb|EEW47794.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus D30]
gi|269941078|emb|CBI49462.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20]
gi|282319346|gb|EFB49698.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus D139]
gi|282590029|gb|EFB95111.1| ComE operon protein 2 [Staphylococcus aureus A10102]
gi|282594485|gb|EFB99470.1| ComE operon protein 2 [Staphylococcus aureus A9765]
gi|282764408|gb|EFC04534.1| ComE operon protein 2 [Staphylococcus aureus A8117]
gi|283460811|gb|EFC07901.1| dCMP deaminase [Staphylococcus aureus subsp. aureus H19]
gi|285817271|gb|ADC37758.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
aureus 04-02981]
gi|298694870|gb|ADI98092.1| dCMP deaminase [Staphylococcus aureus subsp. aureus ED133]
gi|302751418|gb|ADL65595.1| late competence operon required for DNA binding and uptake comEB
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|312829976|emb|CBX34818.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|323438554|gb|EGA96301.1| late competence deaminase protein [Staphylococcus aureus O11]
gi|323442793|gb|EGB00418.1| late competence deaminase protein [Staphylococcus aureus O46]
gi|329314264|gb|AEB88677.1| Possible competence protein ComEB [Staphylococcus aureus subsp.
aureus T0131]
gi|329727571|gb|EGG64027.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21172]
gi|329728343|gb|EGG64780.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21189]
gi|329733117|gb|EGG69454.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus 21193]
Length = 153
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|325283968|ref|YP_004256509.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus proteolyticus
MRP]
gi|324315777|gb|ADY26892.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus proteolyticus
MRP]
Length = 142
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 43/144 (29%), Gaps = 20/144 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYG-GCP----- 53
M SFD M A ++ V I+ V+G G G P
Sbjct: 1 MTRPSFDQLGMETARLWATRSA---DPKVKVGACILDHHHRVVGVGYNGRAAGEPNERES 57
Query: 54 ---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAEV AL A G T YVT EPC+ R ++ I +
Sbjct: 58 LAQGASGFIHAEVNALLAANWNGEGHTLYVTHEPCATCARLIVNSRRISRVLFAQNYAEE 117
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR 128
G L GI V
Sbjct: 118 VRVGAG-LPSGAGILEAAGIEVQH 140
>gi|242373893|ref|ZP_04819467.1| competence protein ComEB [Staphylococcus epidermidis M23864:W1]
gi|242348447|gb|EES40049.1| competence protein ComEB [Staphylococcus epidermidis M23864:W1]
Length = 153
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|15900639|ref|NP_345243.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae TIGR4]
gi|15902698|ref|NP_358248.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae R6]
gi|111657502|ref|ZP_01408246.1| hypothetical protein SpneT_02001292 [Streptococcus pneumoniae
TIGR4]
gi|116515918|ref|YP_816142.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae D39]
gi|148985317|ref|ZP_01818540.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP3-BS71]
gi|148989822|ref|ZP_01821116.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP6-BS73]
gi|148992405|ref|ZP_01822100.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP9-BS68]
gi|148997181|ref|ZP_01824835.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP11-BS70]
gi|149003356|ref|ZP_01828245.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP14-BS69]
gi|149007622|ref|ZP_01831239.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP18-BS74]
gi|149010633|ref|ZP_01832004.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP19-BS75]
gi|149020384|ref|ZP_01835276.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP23-BS72]
gi|168484853|ref|ZP_02709798.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1873-00]
gi|168486764|ref|ZP_02711272.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1087-00]
gi|168488412|ref|ZP_02712611.1| ComE operon protein 2 [Streptococcus pneumoniae SP195]
gi|168490831|ref|ZP_02714974.1| ComE operon protein 2 [Streptococcus pneumoniae CDC0288-04]
gi|168492893|ref|ZP_02717036.1| ComE operon protein 2 [Streptococcus pneumoniae CDC3059-06]
gi|168575403|ref|ZP_02721339.1| ComE operon protein 2 [Streptococcus pneumoniae MLV-016]
gi|169834471|ref|YP_001694207.1| ComE operon protein 2 [Streptococcus pneumoniae Hungary19A-6]
gi|182683664|ref|YP_001835411.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae CGSP14]
gi|194398250|ref|YP_002037390.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae G54]
gi|221231541|ref|YP_002510693.1| cytidine and deoxycytidylate deaminase [Streptococcus pneumoniae
ATCC 700669]
gi|225854253|ref|YP_002735765.1| ComE operon protein 2 [Streptococcus pneumoniae JJA]
gi|225856420|ref|YP_002737931.1| ComE operon protein 2 [Streptococcus pneumoniae P1031]
gi|225858555|ref|YP_002740065.1| ComE operon protein 2 [Streptococcus pneumoniae 70585]
gi|225860719|ref|YP_002742228.1| ComE operon protein 2 [Streptococcus pneumoniae Taiwan19F-14]
gi|237650412|ref|ZP_04524664.1| ComE operon protein 2 [Streptococcus pneumoniae CCRI 1974]
gi|237822476|ref|ZP_04598321.1| ComE operon protein 2 [Streptococcus pneumoniae CCRI 1974M2]
gi|298230044|ref|ZP_06963725.1| ComE operon protein 2 [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255825|ref|ZP_06979411.1| ComE operon protein 2 [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502530|ref|YP_003724470.1| competence protein ComEB [Streptococcus pneumoniae TCH8431/19A]
gi|303255840|ref|ZP_07341881.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae BS455]
gi|303260007|ref|ZP_07345981.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP-BS293]
gi|303261413|ref|ZP_07347361.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP14-BS292]
gi|303264080|ref|ZP_07350001.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS397]
gi|303267618|ref|ZP_07353458.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS457]
gi|303269548|ref|ZP_07355312.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS458]
gi|307067348|ref|YP_003876314.1| deoxycytidylate deaminase [Streptococcus pneumoniae AP200]
gi|307127704|ref|YP_003879735.1| ComE operon protein 2 [Streptococcus pneumoniae 670-6B]
gi|14972218|gb|AAK74883.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae TIGR4]
gi|15458240|gb|AAK99458.1| dCMP deaminase [Streptococcus pneumoniae R6]
gi|116076494|gb|ABJ54214.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae D39]
gi|147756881|gb|EDK63921.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP11-BS70]
gi|147758539|gb|EDK65537.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP14-BS69]
gi|147760777|gb|EDK67748.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP18-BS74]
gi|147765114|gb|EDK72043.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP19-BS75]
gi|147922515|gb|EDK73634.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP3-BS71]
gi|147924764|gb|EDK75848.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP6-BS73]
gi|147928722|gb|EDK79735.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP9-BS68]
gi|147930686|gb|EDK81668.1| phosphomethylpyrimidine kinase [Streptococcus pneumoniae SP23-BS72]
gi|168996973|gb|ACA37585.1| ComE operon protein 2 [Streptococcus pneumoniae Hungary19A-6]
gi|172042006|gb|EDT50052.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1873-00]
gi|182628998|gb|ACB89946.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae CGSP14]
gi|183570286|gb|EDT90814.1| ComE operon protein 2 [Streptococcus pneumoniae CDC1087-00]
gi|183573165|gb|EDT93693.1| ComE operon protein 2 [Streptococcus pneumoniae SP195]
gi|183574679|gb|EDT95207.1| ComE operon protein 2 [Streptococcus pneumoniae CDC0288-04]
gi|183576942|gb|EDT97470.1| ComE operon protein 2 [Streptococcus pneumoniae CDC3059-06]
gi|183578400|gb|EDT98928.1| ComE operon protein 2 [Streptococcus pneumoniae MLV-016]
gi|194357917|gb|ACF56365.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae G54]
gi|220674001|emb|CAR68514.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae ATCC 700669]
gi|225720156|gb|ACO16010.1| ComE operon protein 2 [Streptococcus pneumoniae 70585]
gi|225723766|gb|ACO19619.1| ComE operon protein 2 [Streptococcus pneumoniae JJA]
gi|225725327|gb|ACO21179.1| ComE operon protein 2 [Streptococcus pneumoniae P1031]
gi|225727835|gb|ACO23686.1| ComE operon protein 2 [Streptococcus pneumoniae Taiwan19F-14]
gi|298238125|gb|ADI69256.1| possible competence protein ComEB [Streptococcus pneumoniae
TCH8431/19A]
gi|301793904|emb|CBW36300.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae INV104]
gi|301799762|emb|CBW32331.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae OXC141]
gi|301801592|emb|CBW34290.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae INV200]
gi|302597224|gb|EFL64329.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pneumoniae BS455]
gi|302637547|gb|EFL68034.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP14-BS292]
gi|302638926|gb|EFL69387.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae SP-BS293]
gi|302640933|gb|EFL71316.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS458]
gi|302642848|gb|EFL73155.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS457]
gi|302646485|gb|EFL76711.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus pneumoniae BS397]
gi|306408885|gb|ADM84312.1| Deoxycytidylate deaminase [Streptococcus pneumoniae AP200]
gi|306484766|gb|ADM91635.1| ComE operon protein 2 [Streptococcus pneumoniae 670-6B]
gi|327390102|gb|EGE88445.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA04375]
gi|332073130|gb|EGI83609.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA17570]
gi|332076024|gb|EGI86490.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA41301]
gi|332077161|gb|EGI87623.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA17545]
gi|332202609|gb|EGJ16678.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA41317]
gi|332203899|gb|EGJ17966.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA47368]
gi|332204754|gb|EGJ18819.1| putative deoxycytidylate deaminase [Streptococcus pneumoniae
GA47901]
Length = 155
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|294930369|ref|XP_002779543.1| cytidine deaminase, putative [Perkinsus marinus ATCC 50983]
gi|239888855|gb|EER11338.1| cytidine deaminase, putative [Perkinsus marinus ATCC 50983]
Length = 111
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
S D RFM AL ++ T P V C V +G+V+ HAE+
Sbjct: 15 FSVDDKRFMRVALAAAQEA-YDTDEVP-VGCAFVSNGVVLATAGNETNHTRNATRHAELV 72
Query: 59 ALEEAGEEARGA------TAYVTLEPCSHY 82
A ++ ++ + T YVT+EPC
Sbjct: 73 ATDKIYDKYKSCDAIRHSTLYVTVEPCVMC 102
>gi|242219384|ref|XP_002475472.1| predicted protein [Postia placenta Mad-698-R]
gi|220725331|gb|EED79323.1| predicted protein [Postia placenta Mad-698-R]
Length = 175
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
+ ++M A++ + + G V C+ V+DG VI + HAE+
Sbjct: 4 NPEHVQWMRQAMQMAEIALAHGEV----PVGCIFVRDGRVIAQARNRTNKLRNATRHAEL 59
Query: 58 QALEEAGEE-----------ARGATAYVTLEPCSHY 82
+A++E + T YVT+EPC
Sbjct: 60 EAIDEILADKQWTPALTPYPLSETTLYVTVEPCIMC 95
>gi|78188600|ref|YP_378938.1| deoxycytidylate deaminase, putative [Chlorobium chlorochromatii
CaD3]
gi|78170799|gb|ABB27895.1| deoxycytidylate deaminase, putative [Chlorobium chlorochromatii
CaD3]
Length = 173
Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FMS A SR + + +IV++ ++ G
Sbjct: 22 SWDEYFMSVAHLVSRRATCTRAH---IGAVIVRENNILSTGYNGAPTGLPHCHDDNCRIY 78
Query: 47 --TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
T G HAE+ A+ +A G R + Y+T PC H
Sbjct: 79 RCTHPDGTVEENCVNTIHAEINAIAQAAKHGISIRDSDIYITASPCIHC 127
>gi|328883836|emb|CCA57075.1| tRNA-specific adenosine-34 deaminase [Streptomyces venezuelae ATCC
10712]
Length = 190
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL + + G V +++ DG V+ R HAEV AL A
Sbjct: 49 MRIALAEADAALPAGDV----PVGAVVLGPDGAVLARAHNEREATGDPTAHAEVLALRRA 104
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 105 AVATGEWRLTGCTLVVTLEPCVMC 128
>gi|72383310|ref|YP_292665.1| pyrimidine reductase [Prochlorococcus marinus str. NATL2A]
gi|72003160|gb|AAZ58962.1| pyrimidine reductase [Prochlorococcus marinus str. NATL2A]
Length = 225
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 19/226 (8%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
K+ + L +A S D I G + + + A SD IL+G T+
Sbjct: 1 MKKKWVKLVLASSIDGRIAYPEGGKTQLGQSGDRLVLEESLAWSDGILMGGQTLRDHQSI 60
Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
R + + P+ +I + + L ++ + + + ++
Sbjct: 61 CLIKNKSLLKKRTSEGKNEQPIALIASNQIDFPENWLFFQQPLQRWLLQMQDKKNEIMLP 120
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
K IN+ L L +G+ +++ GGA + +F+ L+D + + +
Sbjct: 121 DGFDKRINLKITWRDSLDDL----YQKGIAKIVLLGGANLISAFLLENLIDELQITITPH 176
Query: 319 VIGEG------GIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+IG + + + ++ G++ + + Y
Sbjct: 177 LIGGDYCWVSSELRNLSTIMNKKNKWILKESQKLGNNELLIRYFRN 222
>gi|19551479|ref|NP_599481.1| cytosine/adenosine deaminase [Corynebacterium glutamicum ATCC
13032]
gi|145294347|ref|YP_001137168.1| hypothetical protein cgR_0302 [Corynebacterium glutamicum R]
gi|140844267|dbj|BAF53266.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 159
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
D R M AL +R G V +I G ++ HAE+
Sbjct: 11 KDDERRMRHALDIARQTPEGDV----PVGAVIYAPTGEILATATNRREADRDPTAHAEII 66
Query: 59 ALEEA------GEEARGATAYVTLEPCSHY 82
AL A G TA VTLEPCS
Sbjct: 67 ALRRAARRFSDGWRLSDCTAVVTLEPCSMC 96
>gi|332284214|ref|YP_004416125.1| putative zinc-binding hydrolase [Pusillimonas sp. T7-7]
gi|330428167|gb|AEC19501.1| putative zinc-binding hydrolase [Pusillimonas sp. T7-7]
Length = 152
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALE 61
M AL + G V +++ G +IG G G HAE+ AL
Sbjct: 1 MRLALEQAELAYAAGEV----PVGAVVLDAQGQLIGAGSNRTIGAHDPTG--HAEIVALR 54
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A GA+ YVTLEPC+
Sbjct: 55 AAAAHVRNYRLPGASLYVTLEPCAMC 80
>gi|260579466|ref|ZP_05847346.1| cytidine/deoxycytidylate deaminase family protein [Corynebacterium
jeikeium ATCC 43734]
gi|258602409|gb|EEW15706.1| cytidine/deoxycytidylate deaminase family protein [Corynebacterium
jeikeium ATCC 43734]
Length = 193
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRW-HVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
M AL + G V +I+ DG +GRGV HAE+ A+
Sbjct: 49 EALMRRALDVAAETPAGDV----PVGAVILGPDGRELGRGVNRREADNDPTAHAEILAIR 104
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
EA T VTLEPC+
Sbjct: 105 EAVQELGDAWRLEDCTLVVTLEPCAMC 131
>gi|255008429|ref|ZP_05280555.1| putative nucleotide deaminase [Bacteroides fragilis 3_1_12]
Length = 149
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
M A+ SR +V +I KDG ++ GV HAEV A+ A +
Sbjct: 1 MRKAIELSRENVANGGG--PFGAVIAKDGEIVVTGVNRVTASCDPTAHAEVTAIRAAASK 58
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 59 LGTFNLSGYEIYTSCEPCPMC 79
>gi|159112692|ref|XP_001706574.1| Cytosine deaminase, putative [Giardia lamblia ATCC 50803]
gi|157434672|gb|EDO78900.1| Cytosine deaminase, putative [Giardia lamblia ATCC 50803]
Length = 169
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEE--A 63
M + + + V C IV G ++ G A HAE+ AL + +
Sbjct: 1 MEECFKEASLALAEREV--PVGCAIVDSAGRILATGRNATNKTRNSTHHAEIMALAQLPS 58
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G + YVT+EPC +
Sbjct: 59 GTDLSDCVLYVTIEPCIMCAAALSIVGLTNIIYF 92
>gi|322376947|ref|ZP_08051440.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. M334]
gi|321282754|gb|EFX59761.1| cytidine and deoxycytidylate deaminase family protein
[Streptococcus sp. M334]
Length = 155
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|308813003|ref|XP_003083808.1| cytidine/deoxycytidylate deaminase family protein (ISS)
[Ostreococcus tauri]
gi|116055690|emb|CAL57775.1| cytidine/deoxycytidylate deaminase family protein (ISS)
[Ostreococcus tauri]
Length = 290
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYG-GCP--------- 53
S+D FMS A ++ N V IV + ++G G + GC
Sbjct: 99 SWDDYFMSVAFLSAQRSK---DPNKQVGACIVGEDKLILGVGYNGFPRGCADSALPWAKK 155
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G T YVT+ PC+
Sbjct: 156 STNGDELETKYPYVCHAEMNAIMNKNSASVAGGTLYVTMYPCNEC 200
>gi|322699440|gb|EFY91201.1| cytidine and deoxycytidylate deaminase [Metarhizium acridum CQMa
102]
Length = 168
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Query: 2 PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYG-GCPHAEV 57
+ D + M AL + S N V L+V DG V+ G T G HAE
Sbjct: 3 SRTEQDHKMLMRRALALAEKSPPKPS-NFRVGALLVNLDDGQVVAEGYTLECEGNTHAEE 61
Query: 58 QA-LEEAGEEARGATAYVT--LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
++ A + A V P + Y PC + + V +R
Sbjct: 62 CCFIKLAEQHATKEEGLVDIINTPHALYTTMEPCFKRLSGKLPCVERVLRQKSWIREVYL 121
Query: 115 GLQWLS 120
G+Q
Sbjct: 122 GVQEPE 127
>gi|314933760|ref|ZP_07841125.1| ComE operon protein 2 [Staphylococcus caprae C87]
gi|313653910|gb|EFS17667.1| ComE operon protein 2 [Staphylococcus caprae C87]
Length = 153
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|91201072|emb|CAJ74130.1| similar to guanine deaminase [Candidatus Kuenenia stuttgartiensis]
Length = 182
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M ++ ++M A+ ++ + G T I+K+ +I H
Sbjct: 24 MKETTC-EKWMRLAINKAKEGILDGQT----PFGACIIKNNRLISCVHNHVWKNTDITAH 78
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ A+ EA + + G T Y T EPC
Sbjct: 79 AEIIAIREACKILNTVDLSGCTIYSTCEPCPMC 111
>gi|323331668|gb|EGA73082.1| Rib2p [Saccharomyces cerevisiae AWRI796]
gi|323335647|gb|EGA76930.1| Rib2p [Saccharomyces cerevisiae Vin13]
gi|323346638|gb|EGA80923.1| Rib2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352328|gb|EGA84863.1| Rib2p [Saccharomyces cerevisiae VL3]
Length = 591
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
R+M A++ + G T T SV ++V V+ G + G HAE AL + +
Sbjct: 435 HRRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQ 493
Query: 66 EARGA--------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
Y T+EPCS G P C + + G V
Sbjct: 494 LHPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVF 540
>gi|207341390|gb|EDZ69458.1| YOL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 589
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
R+M A++ + G T T SV ++V V+ G + G HAE AL + +
Sbjct: 435 HRRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQ 493
Query: 66 EARGA--------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
Y T+EPCS G P C + + G V
Sbjct: 494 LHPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVF 540
>gi|47156908|gb|AAT12300.1| cytidine and deoxycytidylate deaminase-like protein [Antonospora
locustae]
Length = 156
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
+FM A+ + + G V C++V++ VI RG HAE+ AL
Sbjct: 6 QFMDEAVSEAEKALEAGEV----PVGCVVVREDAVISRGHNMTNRESDPLAHAELVALRH 61
Query: 63 AGEEARGATAYVTLEPCSHY 82
A Y+T EPC
Sbjct: 62 C-ASAESLVFYITCEPCIMC 80
>gi|325270746|ref|ZP_08137337.1| guanine deaminase [Prevotella multiformis DSM 16608]
gi|324986862|gb|EGC18854.1| guanine deaminase [Prevotella multiformis DSM 16608]
Length = 155
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
M A++ S R G +I ++G +I G HAEV
Sbjct: 4 EELMRRAVKLSADSVRNGGG------PFGAVIARNGEIIAEGSNGVTIYNDPTAHAEVSV 57
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
+ +A + G Y + EPC
Sbjct: 58 IRKACHQLHTFDLTGCEIYTSCEPCPMC 85
>gi|289644955|ref|ZP_06476996.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
glomerata]
gi|289505228|gb|EFD26286.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
glomerata]
Length = 224
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 26/142 (18%)
Query: 7 DARFMSAALRFSRWHVGLTSTNP---SVACLIVK---------DGIVIGRGVTAY-GGCP 53
D R++ A+ SR +P SV ++V V+ G +
Sbjct: 68 DERWLRMAVEISRR----CPPSPSAFSVGAVLVDRSAGLAADASARVLATGYSRELDPRD 123
Query: 54 HAEVQALEEAGEEARGA--------TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCV 104
HAE AL + A+ T Y +LEPCS R C + IIE GIRRVV
Sbjct: 124 HAEEVALRRLAQHAQDGPPVPAGSLTLYSSLEPCSARASRPRTCTELIIEAGIRRVVFAW 183
Query: 105 DDPDVRVSGRGLQWLSQKGIIV 126
+P+V V G + + + G+ V
Sbjct: 184 REPEVFVDCEGAEIMRRAGLDV 205
>gi|88809683|ref|ZP_01125190.1| hypothetical protein WH7805_00725 [Synechococcus sp. WH 7805]
gi|88786433|gb|EAR17593.1| hypothetical protein WH7805_00725 [Synechococcus sp. WH 7805]
Length = 159
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
+ D M A+R R + + +I KDG V+ + HAEV A
Sbjct: 3 TDQDRTLMKEAIRLMREAGVVNKSGGPFGAVIAKDGKVVSASGNSVVRDLDPSAHAEVNA 62
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ A + + G Y + E C
Sbjct: 63 IRAACKALGTWDLTGCVMYTSCECCPMC 90
>gi|289168253|ref|YP_003446522.1| dCMP deaminase [Streptococcus mitis B6]
gi|307705252|ref|ZP_07642119.1| comE operon protein 2 [Streptococcus mitis SK597]
gi|307706964|ref|ZP_07643763.1| comE operon protein 2 [Streptococcus mitis SK321]
gi|288907820|emb|CBJ22660.1| dCMP deaminase [Streptococcus mitis B6]
gi|307617678|gb|EFN96846.1| comE operon protein 2 [Streptococcus mitis SK321]
gi|307621201|gb|EFO00271.1| comE operon protein 2 [Streptococcus mitis SK597]
Length = 155
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|255693361|ref|ZP_05417036.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
finegoldii DSM 17565]
gi|260620838|gb|EEX43709.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides
finegoldii DSM 17565]
Length = 149
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A ++ V LIVKD ++I G G P
Sbjct: 6 KQSELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCE 59
Query: 54 -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 60 DENNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|167616051|ref|ZP_02384686.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
Bt4]
Length = 50
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY 49
S D M+ ALR + + T NP V C+I + +G G
Sbjct: 3 TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRR 50
>gi|158424013|ref|YP_001525305.1| cytidine and deoxycytidylate deaminase family protein
[Azorhizobium caulinodans ORS 571]
gi|158330902|dbj|BAF88387.1| cytidine and deoxycytidylate deaminase family protein
[Azorhizobium caulinodans ORS 571]
Length = 147
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
FM AL +R G V ++V++ VI R HAE+Q L
Sbjct: 3 ETFMQTALSEARAAAERGEV----PVGAVLVRNSQVIARDGNRTRELSDPTAHAEMQVLR 58
Query: 62 EAGEEARG------ATAYVTLEPCSHY 82
AG +A G YVTLEPC+
Sbjct: 59 -AGAKALGAERLLTCDLYVTLEPCAMC 84
>gi|151945568|gb|EDN63809.1| DRAP deaminase [Saccharomyces cerevisiae YJM789]
gi|256273956|gb|EEU08875.1| Rib2p [Saccharomyces cerevisiae JAY291]
gi|323303146|gb|EGA56948.1| Rib2p [Saccharomyces cerevisiae FostersB]
gi|323307078|gb|EGA60361.1| Rib2p [Saccharomyces cerevisiae FostersO]
Length = 591
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
R+M A++ + G T T SV ++V V+ G + G HAE AL + +
Sbjct: 435 HRRYMEMAVKEADK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQ 493
Query: 66 EARGA--------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
Y T+EPCS G P C + + G V
Sbjct: 494 LHPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVF 540
>gi|302783817|ref|XP_002973681.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
gi|300158719|gb|EFJ25341.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii]
Length = 311
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ L L+ + + +++ + + ++ D K ++
Sbjct: 1 MSRTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCY 60
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
RG +L E G A++ + + ++ +I + + +IG P+P+ E
Sbjct: 61 ERGFLMVLWECGGALSAPALAAGIIHKVIAFVAPKIIG-VTAPTPVGELG 109
>gi|242242866|ref|ZP_04797311.1| competence protein ComEB [Staphylococcus epidermidis W23144]
gi|242233679|gb|EES35991.1| competence protein ComEB [Staphylococcus epidermidis W23144]
gi|319400925|gb|EFV89144.1| comE operon protein 2 [Staphylococcus epidermidis FRI909]
Length = 153
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRSTCRRL---SVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|162454006|ref|YP_001616373.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
cellulosum 'So ce 56']
gi|161164588|emb|CAN95893.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium
cellulosum 'So ce 56']
Length = 229
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNF 338
RGV LLVEGG AV SF+ +RL D + + +G+ IP+ +
Sbjct: 148 HARGVRRLLVEGGGAVLTSFLRARLADRAEVEIAPRFLGDTAIPAVGALGEAPLASAIDL 207
Query: 339 MCVRRDYFGSDVCLE 353
+ G +V L
Sbjct: 208 REPAVELLGGNVLLR 222
>gi|312867602|ref|ZP_07727808.1| putative ComE operon protein 2 [Streptococcus parasanguinis F0405]
gi|311096665|gb|EFQ54903.1| putative ComE operon protein 2 [Streptococcus parasanguinis F0405]
Length = 155
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---- 53
MP + ++D F + AL S + V ++VKD VI G + G
Sbjct: 1 MPHNRLAWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLE 57
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 58 DGCLMVEGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLNC 102
>gi|153807590|ref|ZP_01960258.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
gi|149129952|gb|EDM21164.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185]
Length = 148
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A ++ V LIVKD ++I G G P
Sbjct: 6 KQSELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCE 59
Query: 54 -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 60 DENNLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|29345731|ref|NP_809234.1| cytidine/deoxycytidylate deaminase [Bacteroides thetaiotaomicron
VPI-5482]
gi|253567719|ref|ZP_04845130.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
gi|298384629|ref|ZP_06994189.1| guanine deaminase [Bacteroides sp. 1_1_14]
gi|29337624|gb|AAO75428.1| cytidine/deoxycytidylate deaminase [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841792|gb|EES69872.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
gi|298262908|gb|EFI05772.1| guanine deaminase [Bacteroides sp. 1_1_14]
Length = 156
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEE 62
M A+ S+ +V +I K+G +I GV HAEV A+
Sbjct: 4 EELMRKAIELSKENVANGGG--PFGAVIATKEGEIIATGVNRVTSSCDPTAHAEVSAIRA 61
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 AAAKLGTFNLSGYEIYTSCEPCPMC 86
>gi|167626885|ref|YP_001677385.1| zinc-binding protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596886|gb|ABZ86884.1| zinc-binding protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 142
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M A + G + ++VKD ++ + HAE+ L +A
Sbjct: 1 MQKAYEQALLAYKAGEV----PIGAVLVKDNQIVAQDFNKTIMLNDPTAHAEILVLRQAA 56
Query: 65 EEAR-----GATAYVTLEPCSHY 82
+E YVTLEPC
Sbjct: 57 KELENYRLVNTKLYVTLEPCIMC 79
>gi|59714100|ref|YP_206875.1| deoxycytidylate deaminase [Vibrio fischeri ES114]
gi|197337866|ref|YP_002158583.1| RibG [Vibrio fischeri MJ11]
gi|59482348|gb|AAW87987.1| deoxycytidylate deaminase [Vibrio fischeri ES114]
gi|197315118|gb|ACH64567.1| RibG [Vibrio fischeri MJ11]
Length = 147
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 41/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAKRFFQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + +
Sbjct: 57 EREIKYLKTLHAEENAILFAKRDLEGCDIWVTHFPCPNCAAKIIQTGISKVYCPEQTE-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
SQ G+ V
Sbjct: 116 FLSRWGEKIQVSQDMFSQAGVEVTW 140
>gi|254429334|ref|ZP_05043041.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Alcanivorax sp. DG881]
gi|196195503|gb|EDX90462.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Alcanivorax sp. DG881]
Length = 150
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V L+V+D ++G+G HAE+ A+ A + G+T YVTLEPC+
Sbjct: 24 PVGALVVRDNRLLGKGYNQPIIASDPSAHAEIVAMRSAAQAERNYRLSGSTLYVTLEPCT 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|296130628|ref|YP_003637878.1| Guanine deaminase [Cellulomonas flavigena DSM 20109]
gi|296022443|gb|ADG75679.1| Guanine deaminase [Cellulomonas flavigena DSM 20109]
Length = 186
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
DAR+++ A+ + +V ++V DG+ + G HAEVQA+
Sbjct: 33 DARWLARAVELATANVHDGGG--PFGAVVVADGVEVAVGQNRVTRDLDPTAHAEVQAIRA 90
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A G T Y + EPC
Sbjct: 91 ACRAADTFALDGMTLYTSCEPCPLC 115
>gi|197124086|ref|YP_002136037.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
gi|196173935|gb|ACG74908.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. K]
Length = 183
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 5 SFDAR-FMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
D R M AL +R G V + + +G V+GRG A HAE+
Sbjct: 23 PVDEREAMQEALGLAREAAARGEV----PVGAVALFEGRVVGRGANAREAARDPTAHAEL 78
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
A++EA G T VTLEPC+
Sbjct: 79 LAIQEAARTLGRWRLTGVTVVVTLEPCAMC 108
>gi|148244957|ref|YP_001219651.1| hypothetical protein COSY_0821 [Candidatus Vesicomyosocius
okutanii HA]
gi|146326784|dbj|BAF61927.1| conserved hypothetical protein [Candidatus Vesicomyosocius
okutanii HA]
Length = 153
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M+ A+ ++ G V +++++ +IG HAE+Q L A
Sbjct: 8 WMTLAIEQAKQAQQIGEI----PVGAILIQNNQLIGGAHNQTILNNDPTAHAEIQLLRIA 63
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
G++ G T YVTLEPC+
Sbjct: 64 GKKLNNYRLSGTTLYVTLEPCTMC 87
>gi|322389277|ref|ZP_08062837.1| cytidine and deoxycytidylate deaminase [Streptococcus parasanguinis
ATCC 903]
gi|321144021|gb|EFX39439.1| cytidine and deoxycytidylate deaminase [Streptococcus parasanguinis
ATCC 903]
Length = 160
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
++D F + AL S + V ++VKD VI G + G
Sbjct: 12 AWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLEDGCLMV 68
Query: 54 --------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 69 EGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLNC 107
>gi|315122181|ref|YP_004062670.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495583|gb|ADR52182.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 150
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64
FMS AL + V + V + +IGR HAE+ A+ +
Sbjct: 7 FMSLALEEALNASLRNEI--PVGAVAVLNNKIIGRAGNRNRELKDVTAHAEILAIRMSCQ 64
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 65 TLSQETLPGVDLYVTLEPCTMC 86
>gi|307708898|ref|ZP_07645358.1| comE operon protein 2 [Streptococcus mitis SK564]
gi|307620234|gb|EFN99350.1| comE operon protein 2 [Streptococcus mitis SK564]
Length = 155
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL + + V ++VKD VI G
Sbjct: 7 AWDEYFAAQALLIANRSTCKRAK---VGAILVKDNKVISTGYNGSVSGTEHCIDHECLVI 63
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 64 EGHCVRTLHAEVNAILQGAERGVPKGFTAYVTHFPCLNC 102
>gi|260886275|ref|ZP_05897538.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
35185]
gi|330839740|ref|YP_004414320.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
gi|260863994|gb|EEX78494.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC
35185]
gi|329747504|gb|AEC00861.1| dCMP deaminase [Selenomonas sputigena ATCC 35185]
Length = 163
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 33/108 (30%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP------ 53
M +S +D FM AL + V IV + ++G G G P
Sbjct: 1 MIIS-WDEYFMGIALFSKYRSK---DPHTQVGACIVNEDKHIVGVGY---NGMPNGCSDA 53
Query: 54 -------------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G Y +L PC+
Sbjct: 54 EFPWGSTGEFGDKKYAYVVHAELNAILNASTSLKGCRIYTSLFPCNEC 101
>gi|218281132|ref|ZP_03487667.1| hypothetical protein EUBIFOR_00228 [Eubacterium biforme DSM 3989]
gi|218217646|gb|EEC91184.1| hypothetical protein EUBIFOR_00228 [Eubacterium biforme DSM 3989]
Length = 159
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A + N V IV V+G G
Sbjct: 7 SWDQYFMGMAHLSAMRSK---DPNTRVGACIVNPQKRVVGLGYNGFPYGCEDDEFPWERD 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + ++ G T YV+L PC+
Sbjct: 64 GEFLDTKYPYVVHAELNAILNSIQDLHGCTLYVSLFPCNEC 104
>gi|115456425|ref|NP_001051813.1| Os03g0833900 [Oryza sativa Japonica Group]
gi|40714681|gb|AAR88587.1| putative deoxycytidine deaminase [Oryza sativa Japonica Group]
gi|108711941|gb|ABF99736.1| Guanine deaminase, putative, expressed [Oryza sativa Japonica
Group]
gi|113550284|dbj|BAF13727.1| Os03g0833900 [Oryza sativa Japonica Group]
gi|215707116|dbj|BAG93576.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194042|gb|EEC76469.1| hypothetical protein OsI_14201 [Oryza sativa Indica Group]
gi|222626116|gb|EEE60248.1| hypothetical protein OsJ_13255 [Oryza sativa Japonica Group]
Length = 186
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
D +F+S A+ + V ++V++ ++ HAEV A+
Sbjct: 29 DRDHKFLSKAVEEAYQGV-DCGHGGPFGAVVVRNDEIVVSCHNMVLDYTDPTAHAEVTAI 87
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EA ++ Y + EPC
Sbjct: 88 REACKKLGKIELSDCEMYASCEPCPMC 114
>gi|325268984|ref|ZP_08135605.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
16608]
gi|324988605|gb|EGC20567.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM
16608]
Length = 175
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 28/104 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ D R++ A ++ V L+VKD ++I G G P
Sbjct: 21 SRTAVDYRYLRMARIWAENSYCRRR---QVGALVVKDKMIISDGY---NGTPSGFENVCE 74
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ +G + G+T YVT PC
Sbjct: 75 DEAGVTKPYVLHAEANAITKLARSGNNSDGSTLYVTASPCIECS 118
>gi|113969580|ref|YP_733373.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
gi|113884264|gb|ABI38316.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
Length = 252
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VK+G I G + C HAE+Q L
Sbjct: 89 DEHWMRVAMAMAEKAEAAGEV----PVGAVLVKEGQQIATGYNLSISEHDPCAHAEIQCL 144
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ T YVTLEPC+
Sbjct: 145 RAAGQTIENYRLLDTTLYVTLEPCAMC 171
>gi|332295432|ref|YP_004437355.1| dCMP deaminase [Thermodesulfobium narugense DSM 14796]
gi|332178535|gb|AEE14224.1| dCMP deaminase [Thermodesulfobium narugense DSM 14796]
Length = 152
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 39/114 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D+ FM A + T V +IVK+ ++ G G P
Sbjct: 4 DWDSYFMKIAFLVATRS---TCIRRKVGAVIVKEKRILSTGY---NGAPSGLLHCLDIGC 57
Query: 54 -------------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
HAE A+ G G+T YVT +PC +
Sbjct: 58 LRDKLNIPSGERQELCRGLHAEQNAIIQGAMYGVSLMGSTIYVTNQPCITCAKM 111
>gi|296141715|ref|YP_003648958.1| CMP/dCMP deaminase zinc-binding protein [Tsukamurella
paurometabola DSM 20162]
gi|296029849|gb|ADG80619.1| CMP/dCMP deaminase zinc-binding protein [Tsukamurella
paurometabola DSM 20162]
Length = 144
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL + GL+ + V +I+ DG+V+ R HAEV A+ EA
Sbjct: 1 MGLALEAA----GLSGPDDVPVGAVILDPDGVVLARAGNRREALADPTAHAEVLAIREAA 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 57 TRFGDGWRLGGCTLAVTLEPCAMC 80
>gi|332157817|ref|YP_004423096.1| dCMP deaminase, putative [Pyrococcus sp. NA2]
gi|331033280|gb|AEC51092.1| dCMP deaminase, putative [Pyrococcus sp. NA2]
Length = 182
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRNMDHCIDVGCIM 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|296271673|ref|YP_003654304.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
DSM 7299]
gi|296095848|gb|ADG91798.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis
DSM 7299]
Length = 144
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 36/109 (33%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D F++ A + ++ V +IVKDG ++ G G P
Sbjct: 4 DKNFINIAHEIASASKCVSK---QVGAVIVKDGRILSTGY---NGTPAGYVNCKEHWNDS 57
Query: 54 --------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ G GAT YVTLEPCS ++
Sbjct: 58 YTKEHHDWSKTYEIHAEMNAIIWAARKGISIEGATIYVTLEPCSECSKN 106
>gi|224023823|ref|ZP_03642189.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
18228]
gi|224017045|gb|EEF75057.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM
18228]
Length = 146
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A+ ++ V LIVK+ ++I G G P
Sbjct: 12 LDKRYMRMAMIWAENSYCNRRK---VGALIVKNKMIISDGY---NGTPAGFENVCEDEHG 65
Query: 54 -------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 66 ITIPYVLHAEANAITKIARSNNSSEGATLYVTASPCIEC 104
>gi|332882408|ref|ZP_08450036.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332679792|gb|EGJ52761.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 149
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 38/146 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 10 ELDLRYLRMARIWAENSYCERRK---VGALIVKDKMIISDGY---NGTPAGFENVCEDEN 63
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE A + +G + GAT YVT PC C++ II+ GI+RV
Sbjct: 64 HLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCI------ECSKLIIQSGIKRVFY 117
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDR 128
G+ L + GI V
Sbjct: 118 ARQY----RLTDGIDLLQRAGIEVHY 139
>gi|291532344|emb|CBL05457.1| tRNA-adenosine deaminase [Megamonas hypermegale ART12/1]
Length = 159
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEV 57
D M AL ++ +G + +I D G +I RG HAE+
Sbjct: 7 KNDIEGMKEALIEAKKAFAIGEI----PIGAIICDDKGNIISRGHNLREKTFDATAHAEI 62
Query: 58 QALEEAGEEARGA-----TAYVTLEPCSHY 82
A+ +A + + T YVT+EPC
Sbjct: 63 VAIRKACTKLQNWRLSDLTLYVTVEPCPMC 92
>gi|160893547|ref|ZP_02074331.1| hypothetical protein CLOL250_01101 [Clostridium sp. L2-50]
gi|156864532|gb|EDO57963.1| hypothetical protein CLOL250_01101 [Clostridium sp. L2-50]
Length = 174
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------AYG 50
S+D FM AL + + V IV D ++ G
Sbjct: 23 SWDQYFMGIALLSAERSK---DPSTQVGACIVDDNNRILSEGYNGMPAGCEDDIMPWGKI 79
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P HAE+ A+ G + A Y TL PC+
Sbjct: 80 GDPLNNKYFFVCHAELNAILNYRGGSLKDARLYSTLFPCNEC 121
>gi|116075283|ref|ZP_01472543.1| hypothetical protein RS9916_27024 [Synechococcus sp. RS9916]
gi|116067480|gb|EAU73234.1| hypothetical protein RS9916_27024 [Synechococcus sp. RS9916]
Length = 159
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59
S D M A+R R + T ++ KDG V+ + HAEV A
Sbjct: 3 SDQDQTLMREAIRLMRDAGVVKKTGGPFGAVVAKDGEVVAAAGNSVVRDLDPSAHAEVNA 62
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ A ++ G Y + E C
Sbjct: 63 IRAACKKLGTWDLSGCVMYTSCECCPMC 90
>gi|126175278|ref|YP_001051427.1| cytosine deaminase [Shewanella baltica OS155]
gi|125998483|gb|ABN62558.1| Cytosine deaminase [Shewanella baltica OS155]
Length = 145
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F++AA+ ++ + + ++V DG ++GRG G HAE+ LE
Sbjct: 1 MDE-FLAAAIEEAKQGLAEGGI--PIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG E + AT Y TL PC
Sbjct: 58 NAGRFSAAEYQRATLYSTLSPCDMCS 83
>gi|162447679|ref|YP_001620811.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
gi|161985786|gb|ABX81435.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A]
Length = 158
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A + N V I+ D ++ G G P
Sbjct: 8 SWDQYFMGVAKLSALRSK---DPNTQVGACIINPDRRIVAIGY---NGLPMGLSDDEDFW 61
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE A+ A + AT YVTL PC+
Sbjct: 62 QKNEDYSKSKYAYVVHAEANAILNATTSLKDATLYVTLFPCNEC 105
>gi|332285213|ref|YP_004417124.1| cytosine deaminase [Pusillimonas sp. T7-7]
gi|330429166|gb|AEC20500.1| cytosine deaminase [Pusillimonas sp. T7-7]
Length = 145
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AA++ +R + + ++V G +IGRG G H E+ ALE AG
Sbjct: 4 FMKAAIQEARLGLQEGGI--PIGSVLVHQGTIIGRGHNRRVQCGSTILHGEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHY 82
+ R + Y TL PC
Sbjct: 62 QPASVYRESVLYTTLSPCPMC 82
>gi|223044386|ref|ZP_03614420.1| ComE operon protein 2 [Staphylococcus capitis SK14]
gi|222442255|gb|EEE48366.1| ComE operon protein 2 [Staphylococcus capitis SK14]
Length = 153
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|330686098|gb|EGG97719.1| ComE operon protein 2 [Staphylococcus epidermidis VCU121]
Length = 153
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|270159339|ref|ZP_06187995.1| cytosine deaminase [Legionella longbeachae D-4968]
gi|289165841|ref|YP_003455979.1| Cytosine deaminase (Cytosine aminohydrolase) [Legionella
longbeachae NSW150]
gi|269987678|gb|EEZ93933.1| cytosine deaminase [Legionella longbeachae D-4968]
gi|288859014|emb|CBJ12942.1| Cytosine deaminase (Cytosine aminohydrolase) [Legionella
longbeachae NSW150]
Length = 149
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAE 56
M VS R++ A+ +R V + ++V +IGRG G H E
Sbjct: 1 MSVS--HLRYLDTAIEEARRSVAQGGI--PIGAVLVYKDRIIGRGHNQRVQKGSTILHGE 56
Query: 57 VQALEEAGEE----ARGATAYVTLEPCSHYG 83
+ A+E AG + + Y TL PC+
Sbjct: 57 MDAIENAGRQKAKVYEQSILYTTLSPCAMCS 87
>gi|149239664|ref|XP_001525708.1| deoxycytidylate deaminase [Lodderomyces elongisporus NRRL YB-4239]
gi|146451201|gb|EDK45457.1| deoxycytidylate deaminase [Lodderomyces elongisporus NRRL YB-4239]
Length = 339
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C+IV++ V+ G G P
Sbjct: 189 NWDSYFMRLADLAALRSNCMKR---RVGCVIVRENRVVATGY---NGTPRHLLNCNEGGC 242
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + Y PC
Sbjct: 243 SRCNQGQGSGANLSTCLCLHAEENALLEAGRDRIRDESVLYCNTCPCLTCS 293
>gi|328768239|gb|EGF78286.1| hypothetical protein BATDEDRAFT_26851 [Batrachochytrium
dendrobatidis JAM81]
Length = 156
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62
S D +M A+ + + S V ++V + G + G HAE L +
Sbjct: 7 SVQDQAYMKLAIAEANKSIPSESA-YCVGAVLVLHPSTVYTGYSRELPGNTHAEQVCLIK 65
Query: 63 AG------EEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
A + R A Y T+EPCS G P + I + ++ ++ P++ +
Sbjct: 66 ASHAGLDLDRMRDAIMYTTMEPCSLRLSGNLPCVNRLIDAGISKVLIGILEPPNLVENCS 125
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
G+Q L+ GI V + +G+ F Y
Sbjct: 126 GVQMLTDAGIQVVHLTGFQGRSFKLFYKC 154
>gi|158523013|ref|YP_001530883.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
gi|158511839|gb|ABW68806.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
Length = 168
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQA 59
FM+ AL+ +R + P V C+I V+ G + HAE+ A
Sbjct: 2 DHQHFMTIALKQARQAL-DAGEFP-VGCVIADGKTVVATGARQGTRQNRFNETDHAEIVA 59
Query: 60 LEE------AGEEARGATAYVTLEPCSHY 82
L A + A G Y TLEPC
Sbjct: 60 LRNLATLDPAPDRA-GLVLYSTLEPCLMC 87
>gi|316932708|ref|YP_004107690.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas
palustris DX-1]
gi|315600422|gb|ADU42957.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas
palustris DX-1]
Length = 148
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
+ C+IV+DG+VI + +T HAE+ A+ +A E YVTLEPC+
Sbjct: 24 PIGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIRQASAKLGSERLVDCDLYVTLEPCT 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|312195561|ref|YP_004015622.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
gi|311226897|gb|ADP79752.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
Length = 161
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDG-IVIGRGVTAYGGCP--HAEVQAL 60
D ++ A+ + + T SV +IV DG V+ G + G P HAE AL
Sbjct: 14 DADGHWLEYAVELALR-CPPSRTAFSVGAVIVGPDGATVLAEGW-SRAGDPRDHAEEAAL 71
Query: 61 E--EAGE-EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
G+ GAT Y +LEPCS R C + + GI RVV +P + V +G
Sbjct: 72 RGFAPGDPRLAGATLYSSLEPCSARASRPRTCTELTLAAGIGRVVFAWREPALFVDCQGA 131
Query: 117 QWLSQKGIIV 126
+ L+ G+ V
Sbjct: 132 ELLAAAGVTV 141
>gi|294495546|ref|YP_003542039.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
gi|292666545|gb|ADE36394.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
Length = 150
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M A+ +R + P +IVKD VI R HAE+ A+ A +
Sbjct: 1 MEIAIEQARLGMRNNLGGP-FGAVIVKDETVISRAHNRVLDSNDPTAHAEIMAIRIASSK 59
Query: 67 -----ARGATAYVTLEPCSHY 82
Y T PC
Sbjct: 60 LGTFDLSECEIYTTSYPCPMC 80
>gi|261418466|ref|YP_003252148.1| ComE operon protein 2 [Geobacillus sp. Y412MC61]
gi|319767573|ref|YP_004133074.1| ComE operon protein 2 [Geobacillus sp. Y412MC52]
gi|261374923|gb|ACX77666.1| ComE operon protein 2 [Geobacillus sp. Y412MC61]
gi|317112439|gb|ADU94931.1| ComE operon protein 2 [Geobacillus sp. Y412MC52]
Length = 156
Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|296876705|ref|ZP_06900753.1| deoxycytidylate deaminase [Streptococcus parasanguinis ATCC 15912]
gi|296432207|gb|EFH18006.1| deoxycytidylate deaminase [Streptococcus parasanguinis ATCC 15912]
Length = 160
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
++D F + AL S + V ++VKD VI G + G
Sbjct: 12 AWDEYFAAQALLISNRATCNRAK---VGAVLVKDNKVIATGYNGSVSGTDHCLEDGCLMV 68
Query: 54 --------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 69 EGHCVRTIHAEVNAILQGAERGIPKGFTAYVTHFPCLNC 107
>gi|295398379|ref|ZP_06808419.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC
11563]
gi|294973332|gb|EFG49119.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC
11563]
Length = 175
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ ++V G +IGRG T+ HAE+ A+ EA A YVTLEPC
Sbjct: 37 PIGAVVVYQGEIIGRGHNLRETSQDATTHAEILAIREANRNRASWRLADADLYVTLEPCP 96
Query: 81 HYG 83
Sbjct: 97 MCS 99
>gi|14520789|ref|NP_126264.1| dCMP deaminase, putative [Pyrococcus abyssi GE5]
gi|5458005|emb|CAB49495.1| dCMP deaminase, putative [Pyrococcus abyssi GE5]
Length = 182
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRNMDHCIDVGCIM 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|255034861|ref|YP_003085482.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
gi|254947617|gb|ACT92317.1| CMP/dCMP deaminase zinc-binding [Dyadobacter fermentans DSM 18053]
Length = 164
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 34/152 (22%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------G 51
FD +M A ++ + + V ++ KD +I G G
Sbjct: 11 EFDDIYMDLAKNLAKRSHCIKA---QVGAVLTKDTRIISIGYNGPPAGTHNCDEEFPGVG 67
Query: 52 CP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
CP HAE A+ A G G+T +VTL PC R + ++
Sbjct: 68 CPRDAKGSCSLALHAEQNAILFAVKNGSNIEGSTLFVTLAPCIACAR----VIYTMKIKK 123
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ G+++L + G+ V++
Sbjct: 124 VIFLHSYAAYKGIAVEEGVEFLRRFGVEVEQY 155
>gi|239637600|ref|ZP_04678572.1| ComE operon protein 2 [Staphylococcus warneri L37603]
gi|239596818|gb|EEQ79343.1| ComE operon protein 2 [Staphylococcus warneri L37603]
Length = 153
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|15616866|ref|NP_240079.1| hypothetical protein BU255 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219682178|ref|YP_002468562.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|14286004|sp|P57343|Y255_BUCAI RecName: Full=Uncharacterized protein BU255
gi|25303863|pir||E84959 hypothetical protein yfhC [imported] - Buchnera sp. (strain APS)
gi|10038930|dbj|BAB12965.1| hypothetical protein yfhC [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621911|gb|ACL30067.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|311086568|gb|ADP66649.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087149|gb|ADP67229.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087683|gb|ADP67762.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 161
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M AL+++ G + ++V +IG G + H
Sbjct: 1 MKY-EKDKNWMKIALKYAYYAKEKGEI----PIGAILVFKERIIGIGWNSSISKNDPTAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ AL AG++ + T YVTL+PC
Sbjct: 56 AEIIALRGAGKKIKNYRLLNTTLYVTLQPCIMC 88
>gi|330995533|ref|ZP_08319436.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
11841]
gi|329575313|gb|EGG56858.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT
11841]
Length = 149
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 38/146 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 10 ELDLRYLRMARIWAENSYCERRK---VGALIVKDKMIISDGY---NGTPAGFENVCEDEN 63
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE A + +G + GAT YVT PC C++ II+ GI++V
Sbjct: 64 HLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCI------ECSKLIIQSGIKKVFY 117
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDR 128
G+ L + GI V
Sbjct: 118 ARQY----RLTDGIDLLQRAGIEVHY 139
>gi|224154958|ref|XP_002337544.1| predicted protein [Populus trichocarpa]
gi|222839542|gb|EEE77879.1| predicted protein [Populus trichocarpa]
Length = 436
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 7/209 (3%)
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
+K A S D + S IT ++ H RA++ IL GIGTV+ DDP L R
Sbjct: 1 MKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGTVVEDDPRLNVRDVA 60
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF--RKKNINIIYCD 271
+ ++D + L +++++ + + + AL
Sbjct: 61 TPRQPRI-AVVDSRLDMPLTARVLQAPAGCLIYTSSRDASKTSALQDLGTTVIPMPNAHG 119
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----S 327
DL +L L RG L VE G + S + LVD ++LY + ++G GG+
Sbjct: 120 KVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPKLLGTGGMGIASFG 179
Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
PL+ G D+ +
Sbjct: 180 PLDALSEAIALALHDVQRIGPDLRVVARP 208
>gi|147919375|ref|YP_686889.1| putative cytosine deaminase [uncultured methanogenic archaeon
RC-I]
gi|110622285|emb|CAJ37563.1| putative cytosine deaminase [uncultured methanogenic archaeon
RC-I]
Length = 144
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
FM AA+ ++ + + ++V + ++G G G P HAE+ L AG
Sbjct: 4 FMQAAIDEAKKGLAEGGI--PIGSVMVINRRIVGSGHNKRVQDGDPVMHAEIDCLRSAGR 61
Query: 66 --EARGATAYVTLEPCSHY 82
+ A Y TL PC
Sbjct: 62 VGRYKDAVLYSTLMPCYLC 80
>gi|196012527|ref|XP_002116126.1| hypothetical protein TRIADDRAFT_50803 [Trichoplax adhaerens]
gi|190581449|gb|EDV21526.1| hypothetical protein TRIADDRAFT_50803 [Trichoplax adhaerens]
Length = 157
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--------- 53
S++ FM+ A S+ N V IV + ++G G GC
Sbjct: 18 SWEEYFMAVAFLSSQRSK---DPNTQVGACIVNQENKIVGIGYNGMPNGCNDDALPWARE 74
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G YV L PC+
Sbjct: 75 ASNALDTKYPYVCHAEMNAILNKNSFDLKGCIIYVALFPCNEC 117
>gi|68537118|ref|YP_251823.1| putative cytosine/adenosine deaminase [Corynebacterium jeikeium
K411]
gi|68264717|emb|CAI38205.1| putative cytosine/adenosine deaminase [Corynebacterium jeikeium
K411]
Length = 142
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRW-HVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL + G V +I+ DG +GRGV HAE+ A+ EA
Sbjct: 1 MRRALEIAAETPAGDV----PVGAVILGPDGRELGRGVNRREADNDPTAHAEILAIREAV 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 57 QELGDAWRLEDCTLVVTLEPCAMC 80
>gi|304410115|ref|ZP_07391734.1| Cytosine deaminase [Shewanella baltica OS183]
gi|307302173|ref|ZP_07581931.1| Cytosine deaminase [Shewanella baltica BA175]
gi|304351524|gb|EFM15923.1| Cytosine deaminase [Shewanella baltica OS183]
gi|306914211|gb|EFN44632.1| Cytosine deaminase [Shewanella baltica BA175]
Length = 145
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F++AA+ ++ + + ++V DG ++GRG G HAE+ LE
Sbjct: 1 MDE-FLAAAIEEAKQGLAEGGI--PIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG E + AT Y TL PC
Sbjct: 58 NAGRFSAAEYQRATLYSTLSPCDMCS 83
>gi|300122215|emb|CBK22788.2| unnamed protein product [Blastocystis hominis]
Length = 288
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 33/144 (22%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------AYG 50
S+D FM A + N V IV ++G G +
Sbjct: 125 SWDEYFMGLACLSAMRSK---DPNTQVGACIVNAYNQIVGIGYNGFPRGCSDDVLPWSRE 181
Query: 51 GCP----------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
G HAE+ A+ ARG YV+L PC + C I +
Sbjct: 182 GDNELDTKYMYVCHAEMNAILNINTANARGCKMYVSLFPC-----NNCCKMIIQSGIVEV 236
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKG 123
+ + D +S + G
Sbjct: 237 IYLRDKYYDSNMSVASRRMFDMAG 260
>gi|294055423|ref|YP_003549081.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614756|gb|ADE54911.1| CMP/dCMP deaminase zinc-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 181
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM+ A + + +I +G +I HAE+ A+ +A
Sbjct: 21 YFMAHAFNEAIEAWKK--DEVPIGAVIEYEGRIIASAHNQSRSTNDPTAHAEILAISQAA 78
Query: 65 E-----EARGATAYVTLEPCSHYG 83
YVT EPC
Sbjct: 79 NTLGDWRLNECRLYVTKEPCPMCS 102
>gi|194033488|ref|XP_001924271.1| PREDICTED: tRNA-specific adenosine deaminase 2 isoform 1 [Sus
scrofa]
Length = 191
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A++ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEQAMQMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCHRGGKSPSEVFERTVLYVTVEPCIMC 110
>gi|281354625|gb|EFB30209.1| hypothetical protein PANDA_001894 [Ailuropoda melanoleuca]
Length = 182
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 22 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGY---NGMPNGCSDDLLPWRRT 75
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 76 AESKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 118
>gi|224006712|ref|XP_002292316.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971958|gb|EED90291.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 777
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 64/248 (25%), Gaps = 37/248 (14%)
Query: 4 SSFDARFMSAALRF-----SRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEV 57
+ D M A+ P ++V KDG ++G+G + Y G HA
Sbjct: 178 TKHDKAMMRQAIMMVQSSGGERGSHGPFPRPVAGAVLVAKDGRILGKGRSTYAG--HAVE 235
Query: 58 QALEEAG--------------------EEARGATAYVTLEPCS--HYGRSPPCAQFIIEC 95
A +EAG ++ +T YVTLEP + PP Q +
Sbjct: 236 FAFKEAGINATPLREWCVAWPSDSKFRKDISESTLYVTLEPSNEGQGEEKPPITQLVEMA 295
Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
GI R+V+ DP + G L G+ V + L T
Sbjct: 296 GIPRLVIGCQDPVPENAAEGAGRLHAAGVSVTMGILQGECQDLIKEYTALCNT------- 348
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215
+ + + G +
Sbjct: 349 KIQRMARQHMKRFGRPMGHLHCSVIDSDDAEAFVRNGNSFGKNFGGQHLSYRDFGTYEIA 408
Query: 216 EHSPMRII 223
Sbjct: 409 PPPEAIWA 416
>gi|116491396|ref|YP_810940.1| tRNA-adenosine deaminase [Oenococcus oeni PSU-1]
gi|116092121|gb|ABJ57275.1| tRNA-adenosine deaminase [Oenococcus oeni PSU-1]
Length = 156
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
FM AL+ ++ G + ++VKD VI HAE +E
Sbjct: 9 EEFMQLALKQAQTAFDEGEV----PIGAVLVKDNQVIAADHNRKEQSGIATAHAEKLVIE 64
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
A + +VT+EPC
Sbjct: 65 GANCSLGDWRLNDCSLFVTIEPCVMC 90
>gi|254424317|ref|ZP_05038035.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Synechococcus sp. PCC 7335]
gi|196191806|gb|EDX86770.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Synechococcus sp. PCC 7335]
Length = 248
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ L + + +L+V GG + S ++ L+D + L +
Sbjct: 145 ERPFNWHVVMQDLLCGKSALSSAADRPAIQNLVVMGGGELVASLLSDGLIDDLYLTVCPL 204
Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354
+IG P+P+ + +V L Y
Sbjct: 205 LIGGKTAPTPVGGLGFTLPRTPQLVLKSCQVKADEVFLHY 244
>gi|94263276|ref|ZP_01287092.1| Guanine deaminase [delta proteobacterium MLMS-1]
gi|94266409|ref|ZP_01290105.1| Guanine deaminase [delta proteobacterium MLMS-1]
gi|93452981|gb|EAT03477.1| Guanine deaminase [delta proteobacterium MLMS-1]
gi|93456359|gb|EAT06483.1| Guanine deaminase [delta proteobacterium MLMS-1]
Length = 156
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 6 FDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
D F+ + + R G A L+V D +IG+G HAE+
Sbjct: 2 DDQHFIRQTIALAADHIRRRQGG-----PFAALVVLDDEIIGQGCNRVTSDNDPTAHAEI 56
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
+A+ +A G T YV EPC
Sbjct: 57 EAIRDACRRRGDFRLTGHTLYVNCEPCPMC 86
>gi|304439146|ref|ZP_07399064.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372278|gb|EFM25866.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 147
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M AL ++ P V ++V G V+G G HAE++AL+ A +
Sbjct: 1 MKFALHLAKKS-YRRGEIP-VGAVVVLHGKVVGYGYNLKETLNDATEHAELRALKMAAKT 58
Query: 66 ----EARGATAYVTLEPCSHY 82
G Y TLEPC+
Sbjct: 59 LGTYHLEGTKMYTTLEPCAMC 79
>gi|226364462|ref|YP_002782244.1| deaminase [Rhodococcus opacus B4]
gi|226242951|dbj|BAH53299.1| putative deaminase [Rhodococcus opacus B4]
Length = 161
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 15/96 (15%)
Query: 1 MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--- 53
M S D + A+ + G N + V DG VI G +
Sbjct: 1 MSQSDVDDVDLAHLRRAIELADE-TGDAG-NRPFGAVAVGADGHVISEGANSVATSADVT 58
Query: 54 -HAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
HAE+ A+ A + GAT Y + EPC
Sbjct: 59 EHAELDAITTACGEGRTGDLVGATMYASGEPCPMCS 94
>gi|219681621|ref|YP_002468007.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471309|ref|ZP_05635308.1| hypothetical protein BaphL_01255 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624464|gb|ACL30619.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 161
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M D +M AL+++ G + ++V +IG G + H
Sbjct: 1 MKY-EKDKNWMKIALKYAYYAKEKGEI----PIGAILVFKERIIGIGWNSSISKNDPTAH 55
Query: 55 AEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
AE+ AL AG++ + T YVTL+PC
Sbjct: 56 AEIIALRGAGKKIKNYRLLNTTLYVTLQPCIMC 88
>gi|218778060|ref|YP_002429378.1| dCMP deaminase [Desulfatibacillum alkenivorans AK-01]
gi|218759444|gb|ACL01910.1| dCMP deaminase [Desulfatibacillum alkenivorans AK-01]
Length = 166
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
++D FM A ++ N V +V + ++G G
Sbjct: 10 TWDEYFMGVACLSAQRSK---DPNTQVGACVVNRKKKIVGIGYNGFPTGCSDDELPWARE 66
Query: 51 GCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G T YV L PC+
Sbjct: 67 GGALDTKYAYVCHAELNAILNSIVSDLEGCTLYVALFPCNEC 108
>gi|111021958|ref|YP_704930.1| guanine deaminase [Rhodococcus jostii RHA1]
gi|110821488|gb|ABG96772.1| possible guanine deaminase [Rhodococcus jostii RHA1]
Length = 161
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 15/96 (15%)
Query: 1 MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--- 53
M S D + A+ + G N + V DG VI G +
Sbjct: 1 MSQSDVDDVDLAHLRRAIELADE-TGDAG-NRPFGAVAVGADGHVISEGANSVATSADVT 58
Query: 54 -HAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
HAE+ A+ A + GAT Y + EPC
Sbjct: 59 EHAELDAITTACGEGRTGDLVGATMYASGEPCPMCS 94
>gi|465877|sp|P33968|YLXG_VIBFI RecName: Full=Uncharacterized deaminase in luxG 3'region
gi|396216|emb|CAA49769.1| unnamed protein product [Aliivibrio fischeri]
gi|119116595|dbj|BAF40863.1| putative deoxycytidylate deaminase [Vibrio fischeri]
Length = 147
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 41/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAKRFFQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + +
Sbjct: 57 EREIKYLKTLHAEENAILFAKRDLEGCDIWVTHFPCPNCAAKIIQTGISKVYCPEQTE-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
SQ G+ V
Sbjct: 116 FLSRWGEKIQVSQDMFSQAGVEVTW 140
>gi|332526241|ref|ZP_08402370.1| tRNA-adenosine deaminase [Rubrivivax benzoatilyticus JA2]
gi|332110075|gb|EGJ10703.1| tRNA-adenosine deaminase [Rubrivivax benzoatilyticus JA2]
Length = 188
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDG----IVIGRGVTAY----GGCPH 54
D M+ AL ++ G V +I++ G V+ G H
Sbjct: 9 ERDLHAMAIALDQAQNAWLVGEV----PVGAVIMRPGPEGPQVLATGYNRPITTHDPTAH 64
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ AL A YVTLEPC+
Sbjct: 65 AEIVALRHAATLLGNYRLPECELYVTLEPCAMC 97
>gi|294142299|ref|YP_003558277.1| deoxycytidylate deaminase [Shewanella violacea DSS12]
gi|293328768|dbj|BAJ03499.1| deoxycytidylate deaminase, putative [Shewanella violacea DSS12]
Length = 148
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I +D ++ G Y G
Sbjct: 1 MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 57
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + +
Sbjct: 58 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLSTVHSPEPSKDFL 116
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
L Q G+ VD M
Sbjct: 117 SRWGDKIKISQDMLDQAGVKVDWMQPEPSA 146
>gi|255021639|ref|ZP_05293681.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
51756]
gi|254968899|gb|EET26419.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC
51756]
Length = 178
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEV 57
+ D +M AL +R VG V +++ G ++ R C HAE+
Sbjct: 22 TDDRHWMGLALEQARCASLVGEV----PVGAVLLSASGALLARAHNRPIAMQDPCAHAEI 77
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
L EA G T YVTLEPC+
Sbjct: 78 LVLREAARALGNYRLLGTTLYVTLEPCAMC 107
>gi|317473697|ref|ZP_07932984.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Anaerostipes sp. 3_2_56FAA]
gi|316898818|gb|EFV20845.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Anaerostipes sp. 3_2_56FAA]
Length = 152
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ C+IV DG +I R HAE+ A+E+A + T Y+TLEPC
Sbjct: 25 PIGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQ 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|259507330|ref|ZP_05750230.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
YS-314]
gi|259165041|gb|EEW49595.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens
YS-314]
Length = 52
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55
+ A+ S VG TS NP V +I+ DG + G G T G HA
Sbjct: 4 EEALQLAIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHA 52
>gi|189218057|ref|YP_001938699.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
gi|189184915|gb|ACD82100.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
Length = 168
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57
+ ++ AL+ +++ G ++V IG HAE+
Sbjct: 12 NEKHNYWLRLALKLAQYGSEQGEGGP---FGAVVVLQEEAIGLAHNEVLSRLDPTAHAEI 68
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHY 82
A++ A ++ G+ Y + EPC
Sbjct: 69 LAIQRAAKKISHFDLEGSIIYTSCEPCPMC 98
>gi|91773922|ref|YP_566614.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM
6242]
gi|91712937|gb|ABE52864.1| dCMP deaminase [Methanococcoides burtonii DSM 6242]
Length = 151
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S D F+ A S+ L + V +IV++ ++ G
Sbjct: 6 SIDEYFLEIASVVSKRSTCLRNK---VGAVIVRNKRILSTGYNGAPSNMEHCLEIGCIRQ 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 63 QNNIASGTRHEKCRAVHAEQNAIIQAALHGVSIGGATVYCTHQPCILCAKM 113
>gi|297847068|ref|XP_002891415.1| EMB2191 [Arabidopsis lyrata subsp. lyrata]
gi|297337257|gb|EFH67674.1| EMB2191 [Arabidopsis lyrata subsp. lyrata]
Length = 192
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE-- 61
+M AL ++ + + V C++++DG VI G HAE++A++
Sbjct: 13 HNYMGFALHQAKLALE--ALEVPVGCVLLEDGKVIASGRNRTNETRNATRHAEMEAIDQL 70
Query: 62 ------------EAGEEARGATAYVTLEPCSHY 82
+ E+ YVT EPC
Sbjct: 71 VGQWQEDGLSPSQVAEKFSKCILYVTCEPCIMC 103
>gi|182437330|ref|YP_001825049.1| putative deaminase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326777951|ref|ZP_08237216.1| CMP/dCMP deaminase zinc-binding [Streptomyces cf. griseus
XylebKG-1]
gi|178465846|dbj|BAG20366.1| putative deaminase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326658284|gb|EGE43130.1| CMP/dCMP deaminase zinc-binding [Streptomyces cf. griseus
XylebKG-1]
Length = 142
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + ++ + V +++ DG + HAE+ AL A E
Sbjct: 1 MRRALAEAGRAA--SAGDVPVGAVVLGPDGTGLATAHNEREATGDPTAHAEILALRRAAE 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 AHGEWRLTGCTLVVTLEPCTMC 80
>gi|167748009|ref|ZP_02420136.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
gi|167652586|gb|EDR96715.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662]
Length = 152
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ C+IV DG +I R HAE+ A+E+A + T Y+TLEPC
Sbjct: 25 PIGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQ 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|33862438|ref|NP_893998.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9313]
gi|33640551|emb|CAE20340.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9313]
Length = 238
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 15/229 (6%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
++K+ + L +A+S D + A G + G + + A +D L+G GT+ A
Sbjct: 1 MQKQFWLRLVLAISLDGRLAPAIGGPAQLGGVGDRRVLEEALAWADGALLGAGTLRAHRS 60
Query: 206 ELTCRLNG--------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
P +++ + + + L ++
Sbjct: 61 TCLIHDQDLLNQRKSAGHSAQPTAVVVSRQQWYAAELPFFQQPLERWLLSPHLAKAKGSK 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+D + L L G+ L++ GGA +A S + + +VD + L +
Sbjct: 121 DPLLPVGYERQVLFEQDWPQALNRLAELGLFRLVLLGGAQLAASLLQADVVDELQLTLTP 180
Query: 318 IVIGEGGIPSPL------EEGYLEKNFMCVRRDYF-GSDVCLEYIGKNL 359
++G P ++ + + + +++ L Y K +
Sbjct: 181 KLLGGMHAWVPFQGGDLPDDLGDAEAWHLQTVEPLTNNELLLRYERKRV 229
>gi|317125029|ref|YP_004099141.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
gi|315589117|gb|ADU48414.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
Length = 254
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 1/119 (0%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
I + +L ++ ++++ + D DL L+
Sbjct: 112 IAVSRSGRLPESAQGAAGGPALLATCARAPGLAEAQSILGREHVLVCGEDEVDLPLLVAR 171
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L RG T LL EGG + SF+ RLVD + + V+G P P+
Sbjct: 172 LHERGWTRLLCEGGPHLTGSFLAVRLVDELCFTIAPRVVGGMH-PRPVGPAASPLELEL 229
>gi|297529318|ref|YP_003670593.1| ComE operon protein 2 [Geobacillus sp. C56-T3]
gi|297252570|gb|ADI26016.1| ComE operon protein 2 [Geobacillus sp. C56-T3]
Length = 156
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|73662478|ref|YP_301259.1| dCMP deaminase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72494993|dbj|BAE18314.1| putative dCMP deaminase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 153
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M ++ FM+ + + T SV IVKD +I G
Sbjct: 1 MDRIKWEEYFMAQSHLLALRS---TCERLSVGATIVKDNRIIAGGYNGSVSGEVHCIDEG 57
Query: 49 ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLLEDGHCIRTIHAEMNALLQCAKQGVSTDGATIYVTHFPCLNC 101
>gi|302918078|ref|XP_003052581.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733521|gb|EEU46868.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 167
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALEE 62
FM AL + TN V LIV+ D +I G T G HAE L +
Sbjct: 8 DHKAFMQRALGQANSSPPK-PTNFRVGALIVRLDDNTIIAEGYTLELPGNTHAEECCLLK 66
Query: 63 AGEEARGAT-------------AYVTLEPCSHY--GRSPPCAQFII--ECGIRRVVVCVD 105
E+ G T Y T+EPC G+ P + + + + V +
Sbjct: 67 LAEQ-HGTTEEKLSEVFNTPHALYTTVEPCFKRLSGKLPCVERVLRQKQWINKVYVGVQE 125
Query: 106 DPDVRVSGRGLQWLSQKGIIVD 127
G + L GI V
Sbjct: 126 PETFVGENTGRKTLQDAGIEVH 147
>gi|209548305|ref|YP_002280222.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534061|gb|ACI53996.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 157
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ S+ + ++VKDG VI R T + HAE+ +
Sbjct: 2 ENHEPFLREAIALSKSAMDQGDE--PFGSVLVKDGEVILRAENSVFTGHDMTNHAEMNLI 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 60 KSAAKHYDTGFLADCTLYTSTEPCAMCS 87
>gi|15894774|ref|NP_348123.1| dihydrofolate reductase [Clostridium acetobutylicum ATCC 824]
gi|15024442|gb|AAK79463.1|AE007660_6 Enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis
[Clostridium acetobutylicum ATCC 824]
gi|325508912|gb|ADZ20548.1| Enzyme of dihydrofolate reductase family [Clostridium
acetobutylicum EA 2018]
Length = 176
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 2/122 (1%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+N + K + +D+ + + ++ + GG
Sbjct: 57 YDWIIEKEKGKFPYKNKKCYVFSKSEKGKNENVEFINQDVVEFTNKIKRLDGGNIWLVGG 116
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ +SFI RLVD I+ S +IG GIP ++ E F V L Y
Sbjct: 117 GVLLNSFIKERLVDEFIITISPTLIGH-GIPLF-KKNDFELELKLKGIRRFNQFVELHYE 174
Query: 356 GK 357
K
Sbjct: 175 VK 176
>gi|257126237|ref|YP_003164351.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
gi|257050176|gb|ACV39360.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b]
Length = 161
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A + V I+ D +IG G
Sbjct: 9 SWDEYFMGIAFLSGMRSK---DPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWDKD 65
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ + + + +T YVT PC+
Sbjct: 66 GEFLDTKYPYVVHAELNAILNSIKSLKNSTIYVTHFPCNEC 106
>gi|308235514|ref|ZP_07666251.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Gardnerella vaginalis ATCC 14018]
gi|311114084|ref|YP_003985305.1| putative cytosine deaminase [Gardnerella vaginalis ATCC 14019]
gi|310945578|gb|ADP38282.1| possible cytosine deaminase [Gardnerella vaginalis ATCC 14019]
Length = 154
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
M ALR ++ G V ++V G++IGRG HAEV A+++A
Sbjct: 12 MQEALRLAQVASDCGEV----PVGAVVVDGSGVIIGRGSNLRERDSDPLSHAEVLAIKQA 67
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E T VTLEPC
Sbjct: 68 AESKKSWNLSDCTLVVTLEPCPMC 91
>gi|220918865|ref|YP_002494169.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
2CP-1]
gi|219956719|gb|ACL67103.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter dehalogenans
2CP-1]
Length = 154
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
M AL +R G V + + +G V+GRG A HAE+ A++EA
Sbjct: 1 MQEALGLAREAAARGEV----PVGAVALFEGRVVGRGANAREAARDPTAHAELLAIQEAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 57 RTLGRWRLTGVTVVVTLEPCAMC 79
>gi|14591367|ref|NP_143445.1| deoxycytidylate deaminase [Pyrococcus horikoshii OT3]
gi|3258018|dbj|BAA30701.1| 182aa long hypothetical deoxycytidylate deaminase [Pyrococcus
horikoshii OT3]
Length = 182
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 31/101 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D FM A S T V + VKDG ++ G G P
Sbjct: 23 DEYFMLIAKLVSLRA---TCPRLRVGAVAVKDGYILATGY---NGAPRNMDHCIDVGCIM 76
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G GAT YVT PC
Sbjct: 77 VDGHCHRAVHAEQNVIAMAARKGISLEGATLYVTHFPCDTC 117
>gi|261880583|ref|ZP_06007010.1| tRNA-specific adenosine deaminase [Prevotella bergensis DSM
17361]
gi|270332702|gb|EFA43488.1| tRNA-specific adenosine deaminase [Prevotella bergensis DSM
17361]
Length = 151
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D R+M A++ + ++V +I R HAE+ A+
Sbjct: 11 DERYMRMAIQ--EAEAAFEEGEIPIGAIVVCRDRIISRAHNQTETLNDVTAHAEMLAITA 68
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G+ T YVT+EPC
Sbjct: 69 AANTMGGKYLPDCTLYVTVEPCVMC 93
>gi|53804620|ref|YP_113769.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
gi|53758381|gb|AAU92672.1| cytosine deaminase [Methylococcus capsulatus str. Bath]
Length = 145
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
++ AA+ +R + + ++V DG ++GRG G HAE+ LE AG
Sbjct: 4 YLQAAIAEARKGLEEGGI--PIGSVLVIDGEIVGRGRNRRVQKGSAILHAEMDCLENAGR 61
Query: 66 ----EARGATAYVTLEPCSHYG 83
E R AT Y TL PC
Sbjct: 62 LSAAEYRRATLYSTLSPCDMCS 83
>gi|325110159|ref|YP_004271227.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces
brasiliensis DSM 5305]
gi|324970427|gb|ADY61205.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces
brasiliensis DSM 5305]
Length = 154
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVTAY--GGCPHAE 56
M + DAR M A+ + + +I + G ++ G H E
Sbjct: 1 MISAEIDARIMRRAIELAEHNRQF-----PFGAVITQSGSETILAEGWNRGSENPTWHGE 55
Query: 57 VQAL-----EEAGEEARGATAYVTLEPCSHY 82
+ A+ E + T Y T EPC
Sbjct: 56 IVAINDFFSREQQPDTESLTLYTTAEPCPMC 86
>gi|241889023|ref|ZP_04776327.1| tRNA-specific adenosine deaminase [Gemella haemolysans ATCC
10379]
gi|241864272|gb|EER68650.1| tRNA-specific adenosine deaminase [Gemella haemolysans ATCC
10379]
Length = 165
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRW--HVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ +M AL +R G + ++V V+ + HAE+
Sbjct: 13 KDHSYYMEMALEEARRAYAKGEV----PIGAVLVIGDKVVAKAHNTREENQQALNHAEIL 68
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
++E+ E + Y T+EPC
Sbjct: 69 VIKESCEKQGFWRLDNSYLYTTVEPCVMCS 98
>gi|296828108|ref|XP_002851276.1| deoxycytidylate deaminase [Arthroderma otae CBS 113480]
gi|238838830|gb|EEQ28492.1| deoxycytidylate deaminase [Arthroderma otae CBS 113480]
Length = 349
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 37/109 (33%), Gaps = 33/109 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IVKD V+ G GGCP
Sbjct: 185 AWDQYFMQLASLAAQRSNCMKR---RVGCVIVKDNRVMSTGYNGTPRKMKNCNEGGCPRC 241
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTL-EPCSHYG 83
HAE AL EAG + G+ Y PC
Sbjct: 242 NLGQAGGTVLSTCLCMHAEENALLEAGRQRIGEGSILYCNTSCPCLTCS 290
>gi|157964979|ref|YP_001499803.1| cytosine deaminase [Rickettsia massiliae MTU5]
gi|157844755|gb|ABV85256.1| Cytosine deaminase [Rickettsia massiliae MTU5]
Length = 190
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVTAYGGCP----HAEV 57
+F+ FM AL+ ++ N V +IV + +I HAE+
Sbjct: 12 NFNNFFMEQALKQAKIAF---DKNEVPVGAVIVDRLNQKIIASTHNNTEAKNNALYHAEI 68
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 69 IAINEACNLISSKNLNDYDIYVTLEPCAMC 98
>gi|149926554|ref|ZP_01914815.1| putative deaminase [Limnobacter sp. MED105]
gi|149824917|gb|EDM84131.1| putative deaminase [Limnobacter sp. MED105]
Length = 256
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ D +M AL+ +R G + +V DG + A C HAEVQ
Sbjct: 19 AQDMPWMELALQQARLAAQAGEV----PIGAAVVIDGKAVADAHNAPVLLNDACAHAEVQ 74
Query: 59 ALEEAGEEARG------ATAYVTLEPCSHY 82
A+ +A + AT YVTL+PC
Sbjct: 75 AIRQACQAIGNYRLGAQATLYVTLQPCLMC 104
>gi|110679616|ref|YP_682623.1| cytosine deaminase [Roseobacter denitrificans OCh 114]
gi|109455732|gb|ABG31937.1| cytosine deaminase [Roseobacter denitrificans OCh 114]
Length = 147
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
++ D R + A ++ + ++ + G V+ +G G P H E+
Sbjct: 1 MNDVDIRMLRIAYDEAKAGFDEGG--CPIGSVLARGGEVVAQGRNQRVQKGDPIAHGEMD 58
Query: 59 ALEEAG--EEARGATAYVTLEPCSHY 82
AL +AG + R T Y +L PC
Sbjct: 59 ALRKAGRQKSYRDTTLYTSLSPCMMC 84
>gi|254510248|ref|ZP_05122315.1| cytosine deaminase [Rhodobacteraceae bacterium KLH11]
gi|221533959|gb|EEE36947.1| cytosine deaminase [Rhodobacteraceae bacterium KLH11]
Length = 144
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEA 63
M AL +R G V +IV DG V+ R HAE+ AL A
Sbjct: 1 MKLALEQARAAADRGEV----PVGAVIVAPDGQVVAADGNRTRELNDPTAHAEILALRAA 56
Query: 64 G-----EEARGATAYVTLEP 78
E YVTLEP
Sbjct: 57 CAQVKSERLPDHDLYVTLEP 76
>gi|116491296|ref|YP_810840.1| cytosine/adenosine deaminase [Oenococcus oeni PSU-1]
gi|290890847|ref|ZP_06553913.1| hypothetical protein AWRIB429_1303 [Oenococcus oeni AWRIB429]
gi|116092021|gb|ABJ57175.1| Cytosine/adenosine deaminase [Oenococcus oeni PSU-1]
gi|290479498|gb|EFD88156.1| hypothetical protein AWRIB429_1303 [Oenococcus oeni AWRIB429]
Length = 148
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
M A+ + ++ L +IV+D VI HAE+ A+ +A +
Sbjct: 1 MKLAIEQANENIVL-KEGGPFGAVIVRDQEVICAAHNMVLANLDPTAHAEIIAIRKACKV 59
Query: 66 ----EARGATAYVTLEPCSHY 82
+ T Y + PC
Sbjct: 60 LATCDLSDCTLYTSAYPCPMC 80
>gi|160876335|ref|YP_001555651.1| cytosine deaminase [Shewanella baltica OS195]
gi|160861857|gb|ABX50391.1| Cytosine deaminase [Shewanella baltica OS195]
gi|315268524|gb|ADT95377.1| Cytosine deaminase [Shewanella baltica OS678]
Length = 145
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F++AA+ ++ + + ++V DG ++GRG G HAE+ LE
Sbjct: 1 MDE-FLAAAIEEAKQGLVEGGI--PIGSVLVIDGKIVGRGHNKRVQKGSSVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYG 83
AG E + AT Y TL PC
Sbjct: 58 NAGRFSAAEYQRATLYSTLSPCDMCS 83
>gi|94986787|ref|YP_594720.1| cytosine/adenosine deaminases [Lawsonia intracellularis
PHE/MN1-00]
gi|94731036|emb|CAJ54399.1| Cytosine/adenosine deaminases [Lawsonia intracellularis
PHE/MN1-00]
Length = 162
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + T N V +IV K+G +IG+G A HAE+ AL AG
Sbjct: 19 MDEALIEANQ---CTKKNEVPVGAIIVHKNGKIIGKGHNAPITTSDPTAHAEILALRTAG 75
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ VTLEPC
Sbjct: 76 AVQQNYRLQDCFLIVTLEPCLMC 98
>gi|15601595|ref|NP_233226.1| deoxycytidylate deaminase, putative [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121588185|ref|ZP_01677930.1| deoxycytidylate deaminase, putative [Vibrio cholerae 2740-80]
gi|121729861|ref|ZP_01682290.1| deoxycytidylate deaminase, putative [Vibrio cholerae V52]
gi|153802745|ref|ZP_01957331.1| deoxycytidylate deaminase, putative [Vibrio cholerae MZO-3]
gi|153829488|ref|ZP_01982155.1| putative deoxycytidylate deaminase [Vibrio cholerae 623-39]
gi|227812406|ref|YP_002812416.1| putative deoxycytidylate deaminase [Vibrio cholerae M66-2]
gi|229506010|ref|ZP_04395519.1| deoxycytidylate deaminase [Vibrio cholerae BX 330286]
gi|229510134|ref|ZP_04399614.1| deoxycytidylate deaminase [Vibrio cholerae B33]
gi|229514270|ref|ZP_04403731.1| deoxycytidylate deaminase [Vibrio cholerae TMA 21]
gi|229517736|ref|ZP_04407181.1| deoxycytidylate deaminase [Vibrio cholerae RC9]
gi|229522385|ref|ZP_04411801.1| deoxycytidylate deaminase [Vibrio cholerae TM 11079-80]
gi|229526654|ref|ZP_04416058.1| deoxycytidylate deaminase [Vibrio cholerae bv. albensis VL426]
gi|229528303|ref|ZP_04417694.1| deoxycytidylate deaminase [Vibrio cholerae 12129(1)]
gi|229605541|ref|YP_002876245.1| deoxycytidylate deaminase [Vibrio cholerae MJ-1236]
gi|254284476|ref|ZP_04959443.1| deoxycytidylate deaminase, putative [Vibrio cholerae AM-19226]
gi|255746409|ref|ZP_05420356.1| deoxycytidylate deaminase [Vibrio cholera CIRS 101]
gi|262158237|ref|ZP_06029354.1| deoxycytidylate deaminase [Vibrio cholerae INDRE 91/1]
gi|262169113|ref|ZP_06036806.1| deoxycytidylate deaminase [Vibrio cholerae RC27]
gi|262191582|ref|ZP_06049763.1| deoxycytidylate deaminase [Vibrio cholerae CT 5369-93]
gi|9658270|gb|AAF96738.1| deoxycytidylate deaminase, putative [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121547577|gb|EAX57679.1| deoxycytidylate deaminase, putative [Vibrio cholerae 2740-80]
gi|121628394|gb|EAX60893.1| deoxycytidylate deaminase, putative [Vibrio cholerae V52]
gi|124121702|gb|EAY40445.1| deoxycytidylate deaminase, putative [Vibrio cholerae MZO-3]
gi|148875007|gb|EDL73142.1| putative deoxycytidylate deaminase [Vibrio cholerae 623-39]
gi|150425261|gb|EDN17037.1| deoxycytidylate deaminase, putative [Vibrio cholerae AM-19226]
gi|227011548|gb|ACP07759.1| putative deoxycytidylate deaminase [Vibrio cholerae M66-2]
gi|227015488|gb|ACP11697.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
gi|229334665|gb|EEO00151.1| deoxycytidylate deaminase [Vibrio cholerae 12129(1)]
gi|229336812|gb|EEO01830.1| deoxycytidylate deaminase [Vibrio cholerae bv. albensis VL426]
gi|229340370|gb|EEO05376.1| deoxycytidylate deaminase [Vibrio cholerae TM 11079-80]
gi|229345772|gb|EEO10745.1| deoxycytidylate deaminase [Vibrio cholerae RC9]
gi|229348250|gb|EEO13208.1| deoxycytidylate deaminase [Vibrio cholerae TMA 21]
gi|229352579|gb|EEO17519.1| deoxycytidylate deaminase [Vibrio cholerae B33]
gi|229356361|gb|EEO21279.1| deoxycytidylate deaminase [Vibrio cholerae BX 330286]
gi|229372027|gb|ACQ62449.1| deoxycytidylate deaminase [Vibrio cholerae MJ-1236]
gi|255736163|gb|EET91561.1| deoxycytidylate deaminase [Vibrio cholera CIRS 101]
gi|262022394|gb|EEY41102.1| deoxycytidylate deaminase [Vibrio cholerae RC27]
gi|262029919|gb|EEY48566.1| deoxycytidylate deaminase [Vibrio cholerae INDRE 91/1]
gi|262032547|gb|EEY51104.1| deoxycytidylate deaminase [Vibrio cholerae CT 5369-93]
gi|327485838|gb|AEA80244.1| dCMP deaminase [Vibrio cholerae LMA3894-4]
Length = 161
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + I
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHW 140
>gi|153817018|ref|ZP_01969685.1| deoxycytidylate deaminase, putative [Vibrio cholerae NCTC 8457]
gi|126512428|gb|EAZ75022.1| deoxycytidylate deaminase, putative [Vibrio cholerae NCTC 8457]
Length = 166
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 21/147 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G------ 51
M + +++ + + VG S +PS V +I K ++ G Y G
Sbjct: 1 MRNNDMISKWAQRFFQMAEL-VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSAS 59
Query: 52 ----------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
HAE A+ A + G YVT PC + I
Sbjct: 60 TDDRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQS 118
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 119 EDFLSRWGDKIKVSQDMFLQAGVKVYW 145
>gi|313200758|ref|YP_004039416.1| cmp/dcmp deaminase zinc-binding protein [Methylovorus sp. MP688]
gi|312440074|gb|ADQ84180.1| CMP/dCMP deaminase zinc-binding protein [Methylovorus sp. MP688]
Length = 175
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V L+V DG +IGRG+ A G HAE+QA+ EA G T YVTLEPC+
Sbjct: 37 PVGALVVLDGAIIGRGMNAPIGRHDPTAHAEIQAMREAASAIGNYRLVGCTLYVTLEPCA 96
Query: 81 HYG 83
Sbjct: 97 MCS 99
>gi|219120746|ref|XP_002181105.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407821|gb|EEC47757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 693
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 30/182 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTS-----TNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59
D +M +A+ + G P+V ++V DG ++G+ + + A A
Sbjct: 98 QDEEYMLSAILEAETAGGERGVASAFPKPTVGAVLVADDGRILGKARSDF--RNDAVRAA 155
Query: 60 LEEAG--------------------EEARGATAYVTLEPCSHYGRS--PPCAQFIIECGI 97
+ +AG ++ +T YVTLEP S + PP Q I GI
Sbjct: 156 IAQAGLEVTPLSEWCVSWPSSEQLRKDLETSTLYVTLEPSSEREGTALPPITQLIELVGI 215
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
RVV+ DP +G L GI V E + Q+ +
Sbjct: 216 PRVVIGCADPIQERHSKGAAALHSAGIEVRMGSVLEEECENLIVAYAQLANSKLHKMART 275
Query: 158 VS 159
Sbjct: 276 HF 277
>gi|163748467|ref|ZP_02155721.1| putative deoxycytidylate deaminase [Shewanella benthica KT99]
gi|161332045|gb|EDQ02722.1| putative deoxycytidylate deaminase [Shewanella benthica KT99]
Length = 149
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I +D ++ G Y G
Sbjct: 2 MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLSTVHSPQPSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
L Q G+ VD M
Sbjct: 118 SRWGEKIKISQDMLDQAGVKVDWMQ 142
>gi|303276308|ref|XP_003057448.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461800|gb|EEH59093.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 189
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D R M A P V C++V D ++ RG G HAE +
Sbjct: 4 FTADDERHMRA-ALAEATAALDRWEVP-VGCVLVLDNEIVARGSNRTNERRNGTRHAEFE 61
Query: 59 ALEEA---------GEEARGATAYVTLEPCSHY 82
A++ YVT EPC
Sbjct: 62 AIDALLAAHANDANAARFEDCVLYVTCEPCIMC 94
>gi|212528776|ref|XP_002144545.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
18224]
gi|210073943|gb|EEA28030.1| deoxycytidylate deaminase, putative [Penicillium marneffei ATCC
18224]
Length = 291
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C+IV+D VI G GGCP
Sbjct: 191 TWDQYFMQLASLAAQRSNCMKR---RVGCVIVRDRRVISTGYNGTPRNITNCNEGGCPRC 247
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVT 75
HAE AL EAG E GA Y
Sbjct: 248 NRGEGGGAGLSTCLCIHAEENALLEAGRERIREGAILYCD 287
>gi|172041612|ref|YP_001801326.1| putative cytosine/adenosine deaminase [Corynebacterium urealyticum
DSM 7109]
gi|171852916|emb|CAQ05892.1| putative cytosine/adenosine deaminase [Corynebacterium urealyticum
DSM 7109]
Length = 198
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 16/88 (18%)
Query: 7 DARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
D M A+ + T + V L+V DG V+ HAEV AL
Sbjct: 53 DEELMRQAIDVA----CSTPPGDVPVGALVVDADGTVLATATNRREQDADPLAHAEVLAL 108
Query: 61 EEA------GEEARGATAYVTLEPCSHY 82
+A T VTLEPC+
Sbjct: 109 RQAVRALGDSWRLERCTLVVTLEPCAMC 136
>gi|332213485|ref|XP_003255854.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Nomascus
leucogenys]
Length = 191
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+R ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAVRMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCRQSGKSPSEVFEHTVLYVTVEPCIMC 110
>gi|126735087|ref|ZP_01750833.1| hypothetical protein RCCS2_14459 [Roseobacter sp. CCS2]
gi|126715642|gb|EBA12507.1| hypothetical protein RCCS2_14459 [Roseobacter sp. CCS2]
Length = 148
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M+ AL +R G V +IV V+ + HAEV A+ A
Sbjct: 6 YMNVALDEARVAGARGEV----PVGAVIVGPDGVVAQAGNQTRERSDPTAHAEVLAIRAA 61
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E YVTLEPC
Sbjct: 62 CAALGQERLIRCDLYVTLEPCPMC 85
>gi|62955247|ref|NP_001017639.1| deoxycytidylate deaminase [Danio rerio]
gi|62202187|gb|AAH92809.1| DCMP deaminase [Danio rerio]
Length = 201
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 32 EYFMAVAFLSAQRSK---DPNSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWSRSADN 88
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 89 KLDTKYPYVCHAELNAIMNKNSADVKGCSIYVALFPCNEC 128
>gi|254458782|ref|ZP_05072206.1| cytosine deaminase [Campylobacterales bacterium GD 1]
gi|207084548|gb|EDZ61836.1| cytosine deaminase [Campylobacterales bacterium GD 1]
Length = 145
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
F+ A++ ++ + + ++V DG ++GRG HAE+ LE AG
Sbjct: 4 FLEEAIKEAKKGLSEGGI--PIGSVLVIDGKIVGRGHNRRVQNSSAILHAEMDCLENAGR 61
Query: 66 ----EARGATAYVTLEPCSHYG 83
+ + AT Y TL PC
Sbjct: 62 LKAIDYKRATIYSTLSPCDMCS 83
>gi|39934239|ref|NP_946515.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris
CGA009]
gi|192289765|ref|YP_001990370.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris
TIE-1]
gi|39648087|emb|CAE26607.1| possible cytidine and deoxycytidylate deaminase [Rhodopseudomonas
palustris CGA009]
gi|192283514|gb|ACE99894.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris
TIE-1]
Length = 148
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
+ C+IV+DG+VI + +T HAE+ A+ EA E YVTLEPC+
Sbjct: 24 PIGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIREAAAKLGSERLVDCDLYVTLEPCT 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|224011555|ref|XP_002295552.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
gi|209583583|gb|ACI64269.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335]
Length = 176
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 46/159 (28%), Gaps = 39/159 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------- 53
S+D FM+ + ++ N V IV +IG G G P
Sbjct: 22 SWDDYFMAVSFLSAQRSK---DPNTQVGACIVDTNKSIIGIGY---NGFPRGCSDEHLPW 75
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAEV A+ + RGAT YV L PC+ + I
Sbjct: 76 ARHASCDLHKKYPYVVHAEVNAILNKCSASVRGATIYVALFPCNECSKV-----IIQSGI 130
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
V + D G+ + + +
Sbjct: 131 REVVYLNDFYHDTDACRASRIMFKMAGVKLRQYRPEHEE 169
>gi|183982058|ref|YP_001850349.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium marinum M]
gi|183175384|gb|ACC40494.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium marinum M]
Length = 260
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
LL L GRG+ +L EGG + S I L+D + L + +V+G G L+
Sbjct: 180 LLARLAGRGMRRILTEGGPTLFGSLIEQDLLDELCLTIAPVVVGGLPRRIASGPGQLQTR 239
Query: 338 FMCVRRDYFGSD---VCLEYIG 356
C D + Y+
Sbjct: 240 MHCAHV--ITDDAGYLYTRYVR 259
>gi|6324506|ref|NP_014575.1| Rib2p [Saccharomyces cerevisiae S288c]
gi|2501674|sp|Q12362|RIB2_YEAST RecName: Full=Bifunctional protein RIB2; Includes: RecName:
Full=tRNA pseudouridine synthase 8, cytoplasmic;
AltName: Full=tRNA pseudouridylate synthase 8; AltName:
Full=tRNA-uridine isomerase 8; Includes: RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase
gi|642221|emb|CAA79742.1| DRAP deaminase [Saccharomyces cerevisiae]
gi|1419887|emb|CAA99076.1| RIB2 [Saccharomyces cerevisiae]
gi|285814824|tpg|DAA10717.1| TPA: Rib2p [Saccharomyces cerevisiae S288c]
Length = 591
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGE 65
R+M A++ + G T T SV ++V V+ G + G HAE AL + +
Sbjct: 435 HRRYMEMAVKEAGK-CGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQ 493
Query: 66 EARGA--------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV 102
Y T+EPCS G P C + + G V
Sbjct: 494 LHPNCPTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVF 540
>gi|153214325|ref|ZP_01949326.1| deoxycytidylate deaminase, putative [Vibrio cholerae 1587]
gi|124115382|gb|EAY34202.1| deoxycytidylate deaminase, putative [Vibrio cholerae 1587]
Length = 161
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + I
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHW 140
>gi|76801978|ref|YP_326986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
pharaonis DSM 2160]
gi|76557843|emb|CAI49427.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas
pharaonis DSM 2160]
Length = 219
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
L RG+ L+VEGG + S + LVDS+ +Y +VIG P+ + +F
Sbjct: 138 FAELAARGIDRLMVEGGGELIFSLFEAGLVDSLSVYIGDLVIGGRDAPTLADGEGFVADF 197
Query: 339 ---MCVRRDYFGSDVCLEYIG 356
+ V L +
Sbjct: 198 PELELDEVERLDEGVVLYWEV 218
>gi|326792204|ref|YP_004310025.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
gi|326542968|gb|ADZ84827.1| dCMP deaminase [Clostridium lentocellum DSM 5427]
Length = 169
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVT--------- 47
S+D FM AL ++ + V IV + ++ G
Sbjct: 8 SWDDYFMGIALLAAKRSK---DPSTQVGACIVSGASHDSANENTILSVGYNGLPLGCSDD 64
Query: 48 ----AYGGC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G HAE+ A+ A G+ GA YV L PC+
Sbjct: 65 EFPWERDGDFLDTKYPFVVHAELNAILNARGKSLVGARIYVALFPCNEC 113
>gi|292491509|ref|YP_003526948.1| guanine deaminase [Nitrosococcus halophilus Nc4]
gi|291580104|gb|ADE14561.1| Guanine deaminase [Nitrosococcus halophilus Nc4]
Length = 155
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG-------CPHAEVQALE 61
FM+ A+R + + P LIV+DG ++ A G HAE+QA+
Sbjct: 4 EFMAEAIRLASQGMDDDLGGP-FGALIVRDGEILA---HACNGVVEACDPTAHAEIQAIR 59
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 60 MACKHINHFHLEGCVLYCSCEPCPMC 85
>gi|325677177|ref|ZP_08156843.1| guanine deaminase [Rhodococcus equi ATCC 33707]
gi|325551874|gb|EGD21570.1| guanine deaminase [Rhodococcus equi ATCC 33707]
Length = 156
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F+ + +R +V T A +IVKDG V+ HAE+ A+ +A
Sbjct: 3 FVQRTIDLARQNV--TEGGRPFAAVIVKDGEVLAESPNRVAQTGDPTAHAEILAIRQACT 60
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G T YV PC
Sbjct: 61 ELGTEHLTGTTIYVLAHPCPMC 82
>gi|315225628|ref|ZP_07867437.1| competence protein ComEB [Capnocytophaga ochracea F0287]
gi|314944445|gb|EFS96485.1| competence protein ComEB [Capnocytophaga ochracea F0287]
Length = 146
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A+ +++ V +IVKD ++I G G P
Sbjct: 13 DKAYMRMAMEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDEEGN 66
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + + GAT Y+T+ PC
Sbjct: 67 THWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKECS 105
>gi|300933920|ref|ZP_07149176.1| putative cytosine/adenosine deaminase [Corynebacterium resistens
DSM 45100]
Length = 173
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 6 FDARFMSAALRFS-RWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+M AL + G V ++ DG + G HAE+ A
Sbjct: 27 QHEAWMRRALEVAGATPRGDV----PVGAVVYGPDGRELAVGFNQREKDSDPLGHAEIAA 82
Query: 60 LEEA------GEEARGATAYVTLEPCSHY 82
+ A T VTLEPC+
Sbjct: 83 IRAAVAELGDAWRLEDCTLVVTLEPCAMC 111
>gi|226287511|gb|EEH43024.1| deoxycytidylate deaminase [Paracoccidioides brasiliensis Pb18]
Length = 347
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 32/119 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C+IV++ VI G GGCP
Sbjct: 185 WDQYFMQLASLAAQRSNCMKR---RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241
Query: 54 ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIEC 95
HAE AL EAG E G A Y + G S
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCNTVKIAQLGISEVVYSQSYNM 300
>gi|225678025|gb|EEH16309.1| dCMP deaminase [Paracoccidioides brasiliensis Pb03]
Length = 347
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 32/119 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C+IV++ VI G GGCP
Sbjct: 185 WDQYFMQLASLAAQRSNCMKR---RVGCVIVREKRVISTGYNGTPRNTKNCNEGGCPRCN 241
Query: 54 ---------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCAQFIIEC 95
HAE AL EAG E G A Y + G S
Sbjct: 242 CGEGGGAALSTCLCIHAEENALLEAGRERIGEAAILYCNTVKIAQLGISEVVYSQSYNM 300
>gi|270291422|ref|ZP_06197644.1| ComE operon protein 2 [Pediococcus acidilactici 7_4]
gi|270280268|gb|EFA26104.1| ComE operon protein 2 [Pediococcus acidilactici 7_4]
Length = 160
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM+ AL S T SV +IV+D VI G
Sbjct: 3 KRIDWDQYFMTQALLLSLRS---TCKRLSVGAIIVRDRRVIAGGYNGSVSGDVHCLDEGC 59
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 60 YLVDGHCVRTIHAEMNAVLQCSKFGVATDGAEIYVTDFPCLQCTKM 105
>gi|78777832|ref|YP_394147.1| cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
gi|78498372|gb|ABB44912.1| Cytosine deaminase [Sulfurimonas denitrificans DSM 1251]
Length = 145
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+F+ AA+ ++ + + ++V DG ++GRG HAE+ LE AG
Sbjct: 3 KFLQAAIEEAKKGLKEGGI--PIGSVLVIDGKIVGRGHNRRVQDSSAILHAEMDCLENAG 60
Query: 65 EEA----RGATAYVTLEPCSHYG 83
A + A Y TL PCS
Sbjct: 61 RMAASEYKKAILYSTLSPCSMCS 83
>gi|57234807|ref|YP_181158.1| cytidine/deoxycytidylate deaminase family protein [Dehalococcoides
ethenogenes 195]
gi|270307783|ref|YP_003329841.1| cytidine/deoxycytidylate deaminase, Zn-binding protein
[Dehalococcoides sp. VS]
gi|57225255|gb|AAW40312.1| cytidine/deoxycytidylate deaminase family protein [Dehalococcoides
ethenogenes 195]
gi|270153675|gb|ACZ61513.1| cytidine/deoxycytidylate deaminase, Zn-binding protein
[Dehalococcoides sp. VS]
Length = 157
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M + D F+ A + T V + VKD ++ G
Sbjct: 1 MSRPNADEYFLKIAAVVAERS---TCVRHHVGAVAVKDKHILSTGYNGAPAGLTDCLELG 57
Query: 48 ---AYGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE + +A G GAT Y T PC +
Sbjct: 58 CLRNQNGIPSGTRHEICRAVHAEQNVIIQAALHGTSLEGATVYATHTPCVLCAKM 112
>gi|228472740|ref|ZP_04057498.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
gingivalis ATCC 33624]
gi|228275791|gb|EEK14557.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
gingivalis ATCC 33624]
Length = 150
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A +++ V +IVKD ++I G G P
Sbjct: 12 DRAYMRMAQEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDAQGD 65
Query: 54 ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+T+ PC
Sbjct: 66 TLWYVLHAEANAILKVAASTQSCAGATLYITMSPCRECS 104
>gi|147671596|ref|YP_001215236.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
gi|153822471|ref|ZP_01975138.1| deoxycytidylate deaminase, putative [Vibrio cholerae B33]
gi|254849997|ref|ZP_05239347.1| deoxycytidylate deaminase [Vibrio cholerae MO10]
gi|297580143|ref|ZP_06942070.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499626|ref|ZP_07009432.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|126519994|gb|EAZ77217.1| deoxycytidylate deaminase, putative [Vibrio cholerae B33]
gi|146313979|gb|ABQ18519.1| putative deoxycytidylate deaminase [Vibrio cholerae O395]
gi|254845702|gb|EET24116.1| deoxycytidylate deaminase [Vibrio cholerae MO10]
gi|297535789|gb|EFH74623.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297541607|gb|EFH77658.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 166
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 21/147 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G------ 51
M + +++ + + VG S +PS V +I K ++ G Y G
Sbjct: 1 MRNNDMISKWAQRFFQMAEL-VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSAS 59
Query: 52 ----------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
HAE A+ A + G YVT PC + I
Sbjct: 60 TDDRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQS 118
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 119 EDFLSRWGDKIKVSQDMFLQAGVKVHW 145
>gi|299534874|ref|ZP_07048203.1| hypothetical protein BFZC1_02552 [Lysinibacillus fusiformis ZC1]
gi|298729719|gb|EFI70265.1| hypothetical protein BFZC1_02552 [Lysinibacillus fusiformis ZC1]
Length = 176
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + + + D+ L + T + + GG + +F+ RL+
Sbjct: 67 YPDKKCYVFSTTQTGENEHVTFIQEDVITFTQRLKEQEGTKIWMVGGGELLDAFLQERLI 126
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
D I+ + ++G GIP E N + +G V L Y K
Sbjct: 127 DEWIITITPHLLGS-GIPLFKSPRPFE-NLRLLETKRYGQMVQLHYEVKKE 175
>gi|293378374|ref|ZP_06624543.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecium PC4.1]
gi|292643238|gb|EFF61379.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecium PC4.1]
Length = 173
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLVEHQMIDEWYIQIAPVLLG-DGIPLF-QKGTYEARFELLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|293571522|ref|ZP_06682545.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E980]
gi|291608388|gb|EFF37687.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E980]
Length = 173
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLVEHQMIDEWYIQIAPVLLG-DGIPLF-QKGTYEARFELLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|257884149|ref|ZP_05663802.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257819987|gb|EEV47135.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 173
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLVEHQMIDEWYIQIAPVLLG-DGIPLF-QKGTYEARFELLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|227551900|ref|ZP_03981949.1| dihydrofolate reductase family protein [Enterococcus faecium
TX1330]
gi|257886937|ref|ZP_05666590.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257895509|ref|ZP_05675162.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257898124|ref|ZP_05677777.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|227178972|gb|EEI59944.1| dihydrofolate reductase family protein [Enterococcus faecium
TX1330]
gi|257822991|gb|EEV49923.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257832074|gb|EEV58495.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257836036|gb|EEV61110.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 173
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLVEHQMIDEWYIQIAPVLLG-DGIPLF-QKGTYEARFELLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L YI K
Sbjct: 164 EFIELHYIRK 173
>gi|281358294|ref|ZP_06244776.1| CMP/dCMP deaminase zinc-binding [Victivallis vadensis ATCC
BAA-548]
gi|281315121|gb|EFA99152.1| CMP/dCMP deaminase zinc-binding [Victivallis vadensis ATCC
BAA-548]
Length = 434
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
++ D FM AL +R G V + V+DG V+ + HAE
Sbjct: 1 MNDSDPAFMRLALDEARNAAAAGEV----PVGAVAVRDGRVLATARNRVEERHSAVSHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
++ L T Y+T EPC
Sbjct: 57 IELLHAVEAVTGDWRMDEITFYITKEPCPMC 87
>gi|94265695|ref|ZP_01289434.1| Guanine deaminase [delta proteobacterium MLMS-1]
gi|93453781|gb|EAT04153.1| Guanine deaminase [delta proteobacterium MLMS-1]
Length = 156
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 6 FDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
D F+ + + R H G A L+V D +IG+G HAE+
Sbjct: 2 DDQHFIRQTIALAADHIRRHQGG-----PFAALVVLDDEIIGQGCNRVTSDNDPTAHAEI 56
Query: 58 QALEEAGE-----EARGATAYVTLEPCSHY 82
+A+ +A G T YV EPC
Sbjct: 57 EAIRDACRRRGDFRLTGHTLYVNCEPCPMC 86
>gi|182415443|ref|YP_001820509.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
gi|177842657|gb|ACB76909.1| CMP/dCMP deaminase zinc-binding [Opitutus terrae PB90-1]
Length = 150
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV----KDGIVIGRGVTAYGGCP------- 53
S+D FM+ A+ S V C++V + ++ G +
Sbjct: 16 SWDEYFMATAVLLSTRSNCERL---HVGCVVVTGGDRKNRIVAAGYNGFLPGAAHTSRLR 72
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G G AYVT PC +
Sbjct: 73 DGREQATVHAEQNAIADAARRGSSVEGCVAYVTHYPCINC 112
>gi|227549638|ref|ZP_03979687.1| nucleoside deaminase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078294|gb|EEI16257.1| nucleoside deaminase [Corynebacterium lipophiloflavum DSM 44291]
Length = 177
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTST-NPSVACLIVKD-GIVIGRGVTAY----GGCPH 54
MP+ D R M+ AL +R T + V +I G +G GV H
Sbjct: 2 MPL--ADRR-MARALEVAR----TTPPGDVPVGAVIYDALGREVGHGVNRREASGDPTAH 54
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AEV+AL A G VTLEPC+
Sbjct: 55 AEVEALRAAARTLGAWRLDGCELVVTLEPCTMC 87
>gi|155372299|ref|NP_001094762.1| deoxycytidylate deaminase [Bos taurus]
gi|151555965|gb|AAI49762.1| DCTD protein [Bos taurus]
gi|296472434|gb|DAA14549.1| dCMP deaminase [Bos taurus]
Length = 178
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 71 AENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|86608124|ref|YP_476886.1| cytidine and deoxycytidylate deaminase family protein
[Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556666|gb|ABD01623.1| cytidine and deoxycytidylate deaminase family protein
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 171
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHAEVQALE 61
+M ALR + G P VA L+V G ++ HAE+ AL
Sbjct: 16 HRAWMQLALREAEQA-GEAGEVP-VAALVVGPGEKLLALSSNRRERDRDPTAHAEILALR 73
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
+AG+ +G YVTLEPC
Sbjct: 74 QAGQRLGDWQLQGCRLYVTLEPCPMC 99
>gi|121602446|ref|YP_989463.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Bartonella bacilliformis KC583]
gi|120614623|gb|ABM45224.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Bartonella bacilliformis KC583]
Length = 148
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M ++ M AL ++ G V +I + +I R + Y H
Sbjct: 1 MTLTP-----MEIALLEAQLAAEKGEV----PVGAVITRGKTIISRAGNSIKKPYDPTGH 51
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE++ + A E YVTLEPC+
Sbjct: 52 AEIRVIRMACETLKSERLPDCNLYVTLEPCAMC 84
>gi|254466209|ref|ZP_05079620.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
gi|206687117|gb|EDZ47599.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
Length = 148
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
++ D R + A ++ + ++ + G V+ +G G P H E+
Sbjct: 2 MTDDDRRLLRIAYEEAKAGFDEGG--CPIGSVLARGGQVVAQGRNQRVQKGDPIAHGEMD 59
Query: 59 ALEEAGEEA--RGATAYVTLEPCSHYG 83
AL +AG + R Y +L PC
Sbjct: 60 ALRKAGRQTSYRDTVLYTSLSPCMMCS 86
>gi|153825415|ref|ZP_01978082.1| deoxycytidylate deaminase [Vibrio cholerae MZO-2]
gi|254224811|ref|ZP_04918427.1| deoxycytidylate deaminase, putative [Vibrio cholerae V51]
gi|125622874|gb|EAZ51192.1| deoxycytidylate deaminase, putative [Vibrio cholerae V51]
gi|149740961|gb|EDM55038.1| deoxycytidylate deaminase [Vibrio cholerae MZO-2]
Length = 161
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + I
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHW 140
>gi|257067316|ref|YP_003153571.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
gi|256558134|gb|ACU83981.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
Length = 175
Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 1 MPVS---SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
M + D RF+S A+ +R + ++V DG V+ G
Sbjct: 1 MTWTPTAEDDRRFLSLAIEQARKSWDEGGV--PIGAVLVHDGKVLAAGHNQRVQKDSAIL 58
Query: 54 HAEVQALEEAGEE----ARGATAYVTLEPCSHY 82
H E +E+AG R + Y TL PC
Sbjct: 59 HGETDTIEKAGRLRASVYRESVLYTTLSPCIMC 91
>gi|326385790|ref|ZP_08207419.1| tRNA-adenosine deaminase [Novosphingobium nitrogenifigens DSM
19370]
gi|326209769|gb|EGD60557.1| tRNA-adenosine deaminase [Novosphingobium nitrogenifigens DSM
19370]
Length = 142
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M A+ +R P + ++++ G VI HAE+ A+ A +
Sbjct: 1 MRLAMVEARNAA-QVGAVP-IGAVVMRGGEVIATAHNGPRDCHDPTAHAEILAIRAAAKA 58
Query: 66 ----EARGATAYVTLEPCSHY 82
+VTLEPC+
Sbjct: 59 LGADRLDDCDLWVTLEPCAMC 79
>gi|296199377|ref|XP_002747141.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Callithrix
jacchus]
Length = 191
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 63 ---AGEEARGAT-------AYVTLEPCSHY 82
G + ++ YVT+EPC
Sbjct: 81 LDWCGRSGKNSSEVFEHTVLYVTVEPCIMC 110
>gi|56421051|ref|YP_148369.1| late competence DNA binding and uptake protein [Geobacillus
kaustophilus HTA426]
gi|56380893|dbj|BAD76801.1| late competence protein (DNA binding and uptake) [Geobacillus
kaustophilus HTA426]
Length = 156
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCTDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|158313558|ref|YP_001506066.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
gi|158108963|gb|ABW11160.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
Length = 162
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALEEA 63
D ++ A+ R + +V L+V DG + G + P HAE AL
Sbjct: 20 DRHWLGRAVELGRRCPPSVTA-FAVGALVVAADGTPVAEGY-SRAEEPADHAEEVALRRL 77
Query: 64 --GEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT Y +LEPCS R C + ++ G+RRVV +P + V G + L+
Sbjct: 78 PPGGLPAGATVYSSLEPCSARASRPRTCTELLLAAGVRRVVFAWREPALFVDCDGAERLA 137
Query: 121 QKGIIV 126
G+ V
Sbjct: 138 AAGVEV 143
>gi|325001377|ref|ZP_08122489.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia sp. P1]
Length = 73
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSD 349
GG V +F+ + LVD + + + +G+ P + +G + V G
Sbjct: 1 GGGVVHTAFLTAGLVDELHVVVAPFFVGDPRAPRFVHDGGFPQGPGAPMELVEARPIGDL 60
Query: 350 VCLEYIGK 357
V L Y +
Sbjct: 61 VLLHYRVR 68
>gi|289450534|ref|YP_003475019.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185081|gb|ADC91506.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 149
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
M AL + + + +IV G ++ G + HAE+ A+ +A +
Sbjct: 1 MRRALHQA--ALSERKGEAPIGAVIVYQGRIVAHGRNSRQNSNLITGHAEISAILQAERK 58
Query: 67 AR-----GATAYVTLEPCSHY 82
+ YVTLEPC
Sbjct: 59 LKSWRLPECDIYVTLEPCIMC 79
>gi|72161281|ref|YP_288938.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
fusca YX]
gi|71915013|gb|AAZ54915.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
fusca YX]
Length = 153
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCPHAEVQALE 61
+ D R + A+ S +ST SV LIV DG V+ G + HAE AL
Sbjct: 5 TERDLRLLRTAVDLS-RSCPPSSTAFSVGALIVAADGTVLADGYSRRDDPHDHAEEVALR 63
Query: 62 EAGE---EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AT Y +LEPCS R C I++ I R+V +P++ V RG +
Sbjct: 64 AVAAEDPRLAAATLYSSLEPCSTRASRPRSCTSLILDTPIPRIVFAWREPELFVDCRGAE 123
Query: 118 WLSQKGIIV 126
L G V
Sbjct: 124 LLRAAGREV 132
>gi|283470867|emb|CAQ50078.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus ST398]
Length = 153
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G AT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNALLQCAKQGVSTEDATIYVTHFPCLNC 101
>gi|163800337|ref|ZP_02194238.1| deoxycytidylate deaminase [Vibrio sp. AND4]
gi|159175780|gb|EDP60574.1| deoxycytidylate deaminase [Vibrio sp. AND4]
Length = 152
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 21/150 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S ++ RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWEKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCEIWVTHFPCPNCAAKI-IQTGISRVSCPVQSDDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
+Q G+ V+ + + +
Sbjct: 118 SRWGDKIQVSQDMFAQAGVEVNWLPIEQME 147
>gi|254567633|ref|XP_002490927.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
hydrolytic deamination of cytosine to urac [Pichia
pastoris GS115]
gi|238030724|emb|CAY68647.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the
hydrolytic deamination of cytosine to urac [Pichia
pastoris GS115]
gi|328352537|emb|CCA38936.1| cytosine deaminase [Pichia pastoris CBS 7435]
Length = 150
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HA 55
M S D + AL+ ++ + +V DG V+G G G HA
Sbjct: 1 MTFSDEDG--IKLALKEAQKGYEDGGI--PIGAALVSEDGTVLGVGHNLRIQKGSSVFHA 56
Query: 56 EVQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCA 89
E+ ALE AG + T Y TL PC +
Sbjct: 57 EMSALENAGRLPGKTYKNCTMYTTLSPCHMCSGACLMY 94
>gi|317968054|ref|ZP_07969444.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp.
CB0205]
Length = 210
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G+ LLV GGA +A + LVD + L ++G + + + +
Sbjct: 138 GLERLLVLGGAELATQLLAEGLVDELQLTLVPQLLGGPHGWVQSDGALEASAWTLLEQRC 197
Query: 346 FGSD-VCLEYIG 356
G D + + Y
Sbjct: 198 LGGDELLVRYRR 209
>gi|320323039|gb|EFW79128.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329689|gb|EFW85678.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330882190|gb|EGH16339.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 224
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R +P+RII L +
Sbjct: 31 DDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRNPIRIIPTTSLDLPTSAS 88
Query: 236 IIKTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I K+ + + + + V + K + D +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATTEQARDHEMVKHIRACGKEVLFAGAKHVDFTRLFPMLEARGINHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGHLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGLG 188
>gi|240169734|ref|ZP_04748393.1| hypothetical protein MkanA1_10502 [Mycobacterium kansasii ATCC
12478]
Length = 264
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
LL L RG+ +L EGG + SFI L+D + L + V+G G L+
Sbjct: 183 VLLARLAERGLRRILTEGGPILLGSFIERGLLDELCLTIAPFVVGGLARRIVTGPGQLKT 242
Query: 337 NFMCVRRDYFGSD---VCLEYIG 356
C D + Y+
Sbjct: 243 PMRCAHV--LTDDAGYLYTRYVK 263
>gi|226325555|ref|ZP_03801073.1| hypothetical protein COPCOM_03360 [Coprococcus comes ATCC 27758]
gi|225206038|gb|EEG88392.1| hypothetical protein COPCOM_03360 [Coprococcus comes ATCC 27758]
Length = 162
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A+ R N V C IV D ++ G
Sbjct: 10 SWDEYFMGVAILSGRRSK---DPNTQVGCCIVSADNKILSMGYNGLPRGCSDDEFPWERE 66
Query: 51 G----------CPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G H+E+ A+ +G GA YV+L PC+
Sbjct: 67 GEDPLKTKYVYTVHSELNAILNYSGGSLEGAKLYVSLFPCNEC 109
>gi|330507911|ref|YP_004384339.1| dCMP deaminase [Methanosaeta concilii GP-6]
gi|328928719|gb|AEB68521.1| dCMP deaminase [Methanosaeta concilii GP-6]
Length = 153
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 31/108 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
D FM A+ ++ L + V L VK+ ++ G
Sbjct: 9 LDEYFMEIAIVVAKRSTCLRN---QVGALFVKNKRILTTGYNGAPAGLDHCDVVGCAREG 65
Query: 47 ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 66 VQSGTRHELCRAVHAEQNAIIQAAMHGISIEGATLYCTHQPCILCAKM 113
>gi|325680467|ref|ZP_08160016.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
gi|324107836|gb|EGC02103.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
Length = 159
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A +R N V IV + ++ G G P
Sbjct: 8 SWDEYFMGIAHLSARRSK---DPNTQVGACIVSEENKILSVGY---NGMPTGCNDDDMPW 61
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + A YV+L PC+
Sbjct: 62 DREGEFLETKYPFVCHAELNAILNRSTGSLKNAKIYVSLFPCNEC 106
>gi|94265530|ref|ZP_01289278.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93453971|gb|EAT04317.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
Length = 151
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
S+D FM+ ++ T V ++V++ ++ G
Sbjct: 9 SWDEYFMAITDLVAQRA---TCLRRQVGAVLVRERRIVATGYNGAPSNIRHCLEVGCLRQ 65
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +G+ Y T PCS +
Sbjct: 66 QQGVPSGERHELCRGLHAEQNAIIQAALHGVSLQGSVLYCTNMPCSICSKM 116
>gi|89519331|gb|ABD75808.1| putative cytosine/adenosine deaminase [uncultured bacterium]
Length = 163
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59
+ ++M+ AL+ + G+ P + +IV G +I R T HAE A
Sbjct: 7 TIDHEKYMAEALKEAELA-GIRGDKP-IGAVIVHGGNIIARSSNRFHTLQSPVAHAETTA 64
Query: 60 LEEAGEEAR----GATAYVTLEPCSHY 82
+ T Y T+EPC
Sbjct: 65 IFACAPYLEQYKGECTLYTTVEPCVMC 91
>gi|295706661|ref|YP_003599736.1| ComE operon protein [Bacillus megaterium DSM 319]
gi|37650595|emb|CAD69019.1| ComEB protein [Bacillus megaterium]
gi|294804320|gb|ADF41386.1| ComE operon protein [Bacillus megaterium DSM 319]
Length = 188
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + + T +V +V+D +I G + G
Sbjct: 1 MNRISWDQYFMAQSHLLALRS---TCERLAVGATVVRDKRIIAGGYNGSISGGVHCADEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G + A YVT PC +
Sbjct: 58 CYVIDGHCVRTVHAEVNALLQCAKFGVKTEDAEVYVTHFPCLNC 101
>gi|78066752|ref|YP_369521.1| tRNA-adenosine deaminase [Burkholderia sp. 383]
gi|107028852|ref|YP_625947.1| CMP/dCMP deaminase, zinc-binding [Burkholderia cenocepacia AU
1054]
gi|116689989|ref|YP_835612.1| CMP/dCMP deaminase, zinc-binding [Burkholderia cenocepacia
HI2424]
gi|170733328|ref|YP_001765275.1| CMP/dCMP deaminase zinc-binding [Burkholderia cenocepacia MC0-3]
gi|77967497|gb|ABB08877.1| tRNA-adenosine deaminase [Burkholderia sp. 383]
gi|105898016|gb|ABF80974.1| tRNA-adenosine deaminase [Burkholderia cenocepacia AU 1054]
gi|116648078|gb|ABK08719.1| tRNA-adenosine deaminase [Burkholderia cenocepacia HI2424]
gi|169816570|gb|ACA91153.1| CMP/dCMP deaminase zinc-binding [Burkholderia cenocepacia MC0-3]
Length = 159
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ VI RG G HAE+ AL A + + G YVTLEPC
Sbjct: 18 PVGAVLVRGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|149742700|ref|XP_001492380.1| PREDICTED: dCMP deaminase [Equus caballus]
Length = 178
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|119961460|ref|YP_946593.1| cytidine/deoxycytidylate deaminase [Arthrobacter aurescens TC1]
gi|119948319|gb|ABM07230.1| putative cytidine/deoxycytidylate deaminase [Arthrobacter aurescens
TC1]
Length = 177
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAE 56
P + +M AL +R + T P + +++ DG V+G G HAE
Sbjct: 6 PYHADHLAWMGLALDEARLAL-KTDDVP-IGAVVLGPDGGVLGSGRNEREAHGDPTAHAE 63
Query: 57 VQALEEA----------------GEEARGATAYVTLEPCSHY 82
+ A+ EA G T VTLEPC+
Sbjct: 64 IVAIREAAAALRQLAHDSGASGDGWRLEDCTLVVTLEPCAMC 105
>gi|294501314|ref|YP_003565014.1| ComE operon protein [Bacillus megaterium QM B1551]
gi|294351251|gb|ADE71580.1| ComE operon protein [Bacillus megaterium QM B1551]
Length = 188
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + + T +V +V+D +I G + G
Sbjct: 1 MNRISWDQYFMAQSHLLALRS---TCERLAVGATVVRDKRIIAGGYNGSISGGVHCADEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G + A YVT PC +
Sbjct: 58 CYVIDGHCVRTVHAEVNALLQCAKFGVKTEDAEVYVTHFPCLNC 101
>gi|298373394|ref|ZP_06983383.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
oral taxon 274 str. F0058]
gi|298274446|gb|EFI15998.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes
oral taxon 274 str. F0058]
Length = 141
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R+M A ++ L V L+VKD ++I G G P
Sbjct: 6 KQTLLDERYMRMARIWAENSYCLRRK---VGALLVKDKMIISDGY---NGTPSGFENCCE 59
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + + GAT YVT PC
Sbjct: 60 DEHNNSKPYVLHAEANAISKVARSNNSSDGATLYVTASPCMEC 102
>gi|298293688|ref|YP_003695627.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
gi|296930199|gb|ADH91008.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
Length = 241
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ ++ S D I S I G + +H LRA +D ++VG+GTVLADDP
Sbjct: 21 HRPSPFVIAQLGQSLDGRIATPTGKSRDINGCCGMDHLHRLRAIADVVVVGVGTVLADDP 80
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+LT R + P R ++DP + S S+ ++ ++ +++ ++
Sbjct: 81 QLTTRRVPGRS--PARAVIDPSGRSSRQSRWLREDGCRRIVF---SENAHGWPDEVERIG 135
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ +L+ L RG ++LVEGGA+ FI++ +VD + + S I++G G
Sbjct: 136 TDHDPAIFEPARLIAALAARGHRTVLVEGGASTISRFIDAGVVDRLHVCLSPIILGS-GR 194
Query: 326 PS----PLEEGYLEKNFMCVRRDYFGSD 349
P P++E R Y D
Sbjct: 195 PGLDLRPIDELDDA--LRPRARTYLLDD 220
>gi|291326525|ref|ZP_06124898.2| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
gi|291314071|gb|EFE54524.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
Length = 169
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
D +FM+ AL + + N ++VK+ V+ G T HAE+ +
Sbjct: 18 ELDIQFMTQALALATDAA--KNGNEPFGAVLVKNNQVVMTGENHIHTESDPTYHAELGLI 75
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+ + T Y + EPC
Sbjct: 76 RQYCSEHKVMDLSDYTLYTSCEPCCMCS 103
>gi|257056391|ref|YP_003134223.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
viridis DSM 43017]
gi|256586263|gb|ACU97396.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora
viridis DSM 43017]
Length = 258
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPLEEGYLEKN 337
RG+ + EGG + + + + LVD + L + ++ G G G+PSPL ++
Sbjct: 179 ERGLRRVDCEGGPRLFAALVAADLVDQLCLTIAPLLAGAGADRIVTGVPSPL-----PRS 233
Query: 338 FMCVRRDYFGSDVCLEYIG 356
+ + L Y
Sbjct: 234 LRLASVLHEDGFLMLRYRR 252
>gi|153808000|ref|ZP_01960668.1| hypothetical protein BACCAC_02286 [Bacteroides caccae ATCC 43185]
gi|149129609|gb|EDM20823.1| hypothetical protein BACCAC_02286 [Bacteroides caccae ATCC 43185]
Length = 156
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGV----TAYGGCPHAEVQALEE 62
M A+ S+ +V +I K+G+++ GV T+ HAEV A+
Sbjct: 4 EELMRKAIELSKENVENGGG--PFGAVIATKEGVIVATGVNRVTTSCDPTAHAEVSAIRA 61
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 AAAKLGTFDLSGYEIYTSCEPCPMC 86
>gi|326499113|dbj|BAK06047.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 186
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+ +F+S A+ + V ++V++ V+ HAEV A+
Sbjct: 29 DKEHKFLSIAVEEAYRAV-DCGHGRPFGAVVVRNDQVVASCHNMVLKNTDPTAHAEVTAI 87
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EA + Y + EP
Sbjct: 88 REACRKLGKIDLSDCEMYASCEPFPMC 114
>gi|304385135|ref|ZP_07367481.1| ComE operon protein 2 [Pediococcus acidilactici DSM 20284]
gi|304329329|gb|EFL96549.1| ComE operon protein 2 [Pediococcus acidilactici DSM 20284]
Length = 163
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM+ AL S T SV +IV+D VI G
Sbjct: 6 KRIDWDQYFMTQALLLSLRS---TCKRLSVGAIIVRDRRVIAGGYNGSVSGDVHCLDEGC 62
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 63 YLVDGHCVRTIHAEMNAVLQCSKFGVATDGAEIYVTDFPCLQCTKM 108
>gi|255728685|ref|XP_002549268.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
tropicalis MYA-3404]
gi|240133584|gb|EER33140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida
tropicalis MYA-3404]
Length = 247
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +TL A S D+ I ++ +K H LR++ D+I +GIGTVLADDP+L
Sbjct: 26 NRPFVTLTYAQSLDSKIAAQPGQQTKLSHLETKTMTHYLRSKHDSIFIGIGTVLADDPKL 85
Query: 208 TCRLNGLQEHSPMRIIL---DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
CR + P+ + + K +L LAP II+ EN +P +N
Sbjct: 86 NCRYDEKSTIRPIILDPKAQWQYEKSTLCKICHDGLGLAPFIIIDENMNPSDDSRKIVEN 145
Query: 265 INIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--NSRLVDSIILYR 315
Y + K +L L + S+++EGGA V + + LVDS+I+
Sbjct: 146 QGGKYVKLPLLEKRNENWKLILEKLKELDIKSVMIEGGAKVINDLLINRDNLVDSLIITV 205
Query: 316 SQIVIGEGGI 325
+ + +G+ G+
Sbjct: 206 APVFLGKNGV 215
>gi|149236051|ref|XP_001523903.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
gi|146452279|gb|EDK46535.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239]
Length = 160
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D + M+ AL ++ P CLI KDG V+GRG G P H E+ LE
Sbjct: 14 DDKKGMAIALEQAQISYNE-GGIPIGGCLIHKDGRVLGRGYNKRVQNGSPILHGEMSVLE 72
Query: 62 EAGEEA----RGATAYVTLEPCSHY 82
AG + T Y TL PC+
Sbjct: 73 NAGRLPHSIYKDCTMYTTLSPCNMC 97
>gi|298485418|ref|ZP_07003506.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160054|gb|EFI01087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 224
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R P+RII L +
Sbjct: 31 DDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRDPIRIIPTTSLDLPTSAS 88
Query: 236 IIKTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I K+ + + + + V + K + D +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATTEQARDHEMVKHIRACGKEVLFAGAKHVDFTRLFPMLEARGINHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGHLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGLG 188
>gi|289640846|ref|ZP_06473017.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
glomerata]
gi|289509422|gb|EFD30350.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca
glomerata]
Length = 157
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+M AL +R + +P V +I DG I HAE+ L AG
Sbjct: 7 WMRRALEMARALPDPGAGDPPVGAVIYGPDGREITAAHHDRQRTADPTAHAEITVLRRAG 66
Query: 65 E-----EARGATAYVTLEPCSH 81
+ G T TLEP
Sbjct: 67 RALGTWKLDGCTLVTTLEPGVM 88
>gi|193636783|ref|XP_001945167.1| PREDICTED: deoxycytidylate deaminase-like [Acyrthosiphon pisum]
Length = 220
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM+ A ++ V IV D ++G G G P
Sbjct: 48 SWDDFFMATAFLVAKRSK---DPVTQVGACIVTPDKKIVGTGY---NGMPIGCNDDNFPW 101
Query: 54 ----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + + R T YV L PC+
Sbjct: 102 GKNNPSKLENKYFYVCHAEMNAVLNKNSMDVRNCTIYVALFPCNEC 147
>gi|294495182|ref|YP_003541675.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
gi|292666181|gb|ADE36030.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii
DSM 5219]
Length = 147
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+FM A+ + + ++V+DG++IGRG HAE+ + +AG
Sbjct: 3 QFMKEAINEAMAGRDKGGI--PIGSVLVRDGMIIGRGHNLRVQNDDPLAHAEISCMRDAG 60
Query: 65 E--EARGATAYVTLEPCSHY 82
Y TL PC
Sbjct: 61 RIGSYADTVLYSTLMPCYLC 80
>gi|240274201|gb|EER37719.1| deoxycytidylate deaminase [Ajellomyces capsulatus H143]
Length = 385
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C++V+ V+ G GGCP
Sbjct: 215 WDQYFMQLASLAAQRSNCMKR---RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 271
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GAT Y PC
Sbjct: 272 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCLTCS 318
>gi|325679150|ref|ZP_08158742.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
gi|324109155|gb|EGC03379.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
Length = 159
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 31/157 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP----- 53
M S+D F+ A + N V IV + ++ G GC
Sbjct: 5 MNYISWDDYFLGIAELSAARSK---DPNTQVGACIVSEENKILSVGYNGMPAGCNDDEMP 61
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
HAE+ A+ + + +G+ YV+L PC + I
Sbjct: 62 WGREGDFLDTKYPFVCHAELNAILNSNHDLKGSRIYVSLFPC-----NECAKAIIQSGIK 116
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
+ C D + G+ ++ +
Sbjct: 117 EVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEHF 153
>gi|114798109|ref|YP_758764.1| riboflavin biosynthesis protein RibD domain-containing protein
[Hyphomonas neptunium ATCC 15444]
gi|114738283|gb|ABI76408.1| riboflavin biosynthesis protein RibD N-terminal domain protein
[Hyphomonas neptunium ATCC 15444]
Length = 152
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
A + +R + GLT NPSV CLI+ G + G GVT GG PHAE AL+EA +A G TA
Sbjct: 16 AFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAGGTA 75
Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
YVTLEPC P + VV + + GL L + G+ V
Sbjct: 76 YVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHPTARDGLAILREAGVRV 129
>gi|52081108|ref|YP_079899.1| hypothetical protein BL02086 [Bacillus licheniformis ATCC 14580]
gi|52786486|ref|YP_092315.1| hypothetical protein BLi02751 [Bacillus licheniformis ATCC 14580]
gi|319644935|ref|ZP_07999168.1| late competence protein ComEB [Bacillus sp. BT1B_CT2]
gi|18266365|gb|AAL67525.1|AF459916_2 late competence protein ComEB [Bacillus licheniformis]
gi|52004319|gb|AAU24261.1| ComEB [Bacillus licheniformis ATCC 14580]
gi|52348988|gb|AAU41622.1| ComEB [Bacillus licheniformis ATCC 14580]
gi|317392744|gb|EFV73538.1| late competence protein ComEB [Bacillus sp. BT1B_CT2]
Length = 189
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERISWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGVHCADEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CYMVDGHCIRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCIQC 101
>gi|158321591|ref|YP_001514098.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
gi|158141790|gb|ABW20102.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs]
Length = 145
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A T V ++VKD V+ G
Sbjct: 4 SWDEYFMEMAEIVKTRS---TCLRRQVGAVVVKDRRVLASGYNGAPTGLKHCEETGCLRD 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + AT YVT +PC +
Sbjct: 61 RLGIPSGQRHELCRGLHAEQNAIIQASLHGVKLEDATIYVTHQPCIICAKM 111
>gi|317034868|ref|XP_001400638.2| riboflavin-specific deaminase [Aspergillus niger CBS 513.88]
Length = 654
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTV
Sbjct: 393 PKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTV 452
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +++DP + + AP ++
Sbjct: 453 LADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVV 512
Query: 248 VTENDDPVLALAFRK--------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + +L L G+ S+++EGG V
Sbjct: 513 VSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVL 572
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSD 349
+N + +DSII+ + +G GG+ SP + N V+ G +
Sbjct: 573 SELLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQN 632
Query: 350 VCL 352
V +
Sbjct: 633 VIM 635
>gi|212633820|ref|YP_002310345.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3]
gi|212555304|gb|ACJ27758.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella
piezotolerans WP3]
Length = 146
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I ++ ++ G Y G
Sbjct: 2 MTKWATRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGVSDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLSTVHSPQPSQDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWGEKIKISQDMFDQAGVTVDWMQ 142
>gi|134081305|emb|CAK41808.1| unnamed protein product [Aspergillus niger]
Length = 651
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTV
Sbjct: 390 PKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTV 449
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +++DP + + AP ++
Sbjct: 450 LADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVV 509
Query: 248 VTENDDPVLALAFRK--------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + +L L G+ S+++EGG V
Sbjct: 510 VSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVL 569
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSD 349
+N + +DSII+ + +G GG+ SP + N V+ G +
Sbjct: 570 SELLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQN 629
Query: 350 VCL 352
V +
Sbjct: 630 VIM 632
>gi|86139939|ref|ZP_01058504.1| cytosine deaminase [Roseobacter sp. MED193]
gi|85823357|gb|EAQ43567.1| cytosine deaminase [Roseobacter sp. MED193]
Length = 147
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
+++ D R + A ++ + ++ + G V+ +G G P H E+
Sbjct: 1 MNADDTRLLRIAYEEAKAGFDEGG--CPIGSVLARGGEVVAQGRNQRVQKGDPIAHGEMD 58
Query: 59 ALEEAGEE--ARGATAYVTLEPCSHY 82
AL +AG + R T Y +L PC
Sbjct: 59 ALRKAGRQKTYRDTTLYTSLSPCMMC 84
>gi|268552503|ref|XP_002634234.1| Hypothetical protein CBG01804 [Caenorhabditis briggsae]
gi|187037916|emb|CAP22833.1| hypothetical protein CBG_01804 [Caenorhabditis briggsae AF16]
Length = 426
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 17/178 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
D F+ A + + V C+ V DG IGRG G P HAE+ A+
Sbjct: 7 EDDRIFLEQAFTLAEEALNQDEV--PVGCVFVVDGEEIGRGRNRVNETGDPTRHAEMVAV 64
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
EE+ + + YV+LEPC + + VR
Sbjct: 65 TEIWSKYGEESNNLLKKSVLYVSLEPCIMCS---SAMYQLGIRKMVYGAENPRFGGVRSV 121
Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170
G ++ + I + + +E + + + + + +
Sbjct: 122 GSAEKYREENNIEIVAGVWAERSVGMLKAFYEKQNPFAPPEKRKTKTPKLWSTTRPFC 179
>gi|297158942|gb|ADI08654.1| riboflavin biosynthesis protein RibD [Streptomyces bingchenggensis
BCW-1]
Length = 72
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRD 344
+ +EGG +A SF+++ LVD +I Y + ++G G S L+ G +E +
Sbjct: 1 MFLEGGPTLAASFVSAGLVDRVIAYIAPALLGRG--KSALQGGTIETMEDILRCELLDVA 58
Query: 345 YFGSDVCLEYIGKN 358
G D+ L +
Sbjct: 59 RSGPDIRLIARPRR 72
>gi|325191112|emb|CCA25598.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 196
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 18/95 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
M V D FM AL + G V C+ V +I H
Sbjct: 6 MEV-DKDVGFMREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKH 60
Query: 55 AEVQAL-------EEAGEEARGATAYVTLEPCSHY 82
AE+ A+ + T YVT EPC
Sbjct: 61 AELVAIDYIVSNYNNTRAIFQETTFYVTCEPCIMC 95
>gi|296270228|ref|YP_003652860.1| bifunctional deaminase-reductase domain-containing protein
[Thermobispora bispora DSM 43833]
gi|296093015|gb|ADG88967.1| bifunctional deaminase-reductase domain protein [Thermobispora
bispora DSM 43833]
Length = 240
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
RG+T +L EGG + + L+D + L S ++ G L V
Sbjct: 166 ERGLTRILCEGGPVLNAELAAAGLIDELALTISPMLTGGDAAR-ILNGAATVTPLALVHV 224
Query: 344 DYFGSDVCLEYIGK 357
+ Y +
Sbjct: 225 LEEDGFLFCRYRRE 238
>gi|289208092|ref|YP_003460158.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
K90mix]
gi|288943723|gb|ADC71422.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp.
K90mix]
Length = 146
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 45/144 (31%), Gaps = 10/144 (6%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
F+ AAL +R + +I G ++GRG G HAE+ ALE AG
Sbjct: 4 FLEAALDEARTGWDEGGI--PIGSVIEHGGRIVGRGHNRRVQSGSAILHAEMDALENAGR 61
Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ R T Y TL PC+ + ++ +R G + L
Sbjct: 62 QPASVYRECTLYTTLSPCAMCSGAIVLYGIPRVVVGENATFMGEEDWLRSHGVQVDVLQD 121
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQ 145
E L
Sbjct: 122 AACQELMTAFIERHPDLWHEDIGC 145
>gi|146302806|ref|YP_001190122.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera
sedula DSM 5348]
gi|145701056|gb|ABP94198.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Metallosphaera sedula DSM 5348]
Length = 206
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 11/213 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +I + ++ D I S ++ K + H+LRAQ DA+++G T D+P L
Sbjct: 1 MRPYIIISSTMTIDGKIAAKDSFSE-LSCRYDKIRQHMLRAQVDAVMIGARTARVDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T + +P+R+I+ L KI + V+ D + L + +
Sbjct: 60 TLKYYT--GKNPIRVIVTNSGDLDPGLKIF-NIPPSTVVYTRNLSDSLKELTKKGVYVRT 116
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-- 325
C + L V +++VEGG + S + VD + + S V G G
Sbjct: 117 FSTLCDAMADLYKTF---SVRTVMVEGGGKLNWSLMKEGCVDEVRVTVSPRVFGSGTSIF 173
Query: 326 --PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
R G ++ L Y
Sbjct: 174 DGDGFPGSMSPTLKLHSAYRCQCGEEIVLIYKK 206
>gi|327542899|gb|EGF29355.1| cytosine deaminase [Rhodopirellula baltica WH47]
Length = 149
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
F+ AAL +R + + ++V D ++ RG G HAE+ LE AG
Sbjct: 4 FLQAALDEARLGLNEHGI--PIGSVLVIDNEIVSRGHNRRIQNGSSILHAEMDCLERAGR 61
Query: 66 EARG----ATAYVTLEPCSHYG 83
+T Y TL PC
Sbjct: 62 LTANDYSRSTLYSTLSPCDMCS 83
>gi|171909718|ref|ZP_02925188.1| CMP/dCMP deaminase, zinc-binding protein [Verrucomicrobium
spinosum DSM 4136]
Length = 169
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
F+ A+ + ++ ++VK G VI RGV HAE+ A+ A +
Sbjct: 16 FLQEAIDLAVANISEGGR--PFGAVVVKYGRVISRGVNETHLSNDPTAHAEMLAVRAASQ 73
Query: 66 -----EARGATAYVTLEPCSHY 82
T Y + PC
Sbjct: 74 VLQSPLLESCTLYASGHPCPMC 95
>gi|169829293|ref|YP_001699451.1| ComE operon protein 2 [Lysinibacillus sphaericus C3-41]
gi|168993781|gb|ACA41321.1| ComE operon protein 2 [Lysinibacillus sphaericus C3-41]
Length = 189
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGG 51
M ++D FM+ + + T T +V +V+D +I G G
Sbjct: 1 MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIENG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPC 79
HAE+ AL + G +GA YVT PC
Sbjct: 58 CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPC 98
>gi|317157692|ref|XP_001826523.2| riboflavin-specific deaminase [Aspergillus oryzae RIB40]
Length = 637
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTV
Sbjct: 373 PKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTV 432
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +I+DP + + + AP ++
Sbjct: 433 LADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVV 492
Query: 248 VTENDDPVLALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ K + +L L GV S+++EGG V
Sbjct: 493 VSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVL 552
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSD 349
+N + +DSII+ + +G GG+P SP + N V+ G +
Sbjct: 553 SELLNPEYTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQN 612
Query: 350 VCL 352
V +
Sbjct: 613 VIM 615
>gi|317495073|ref|ZP_07953445.1| ComE operon protein 2 [Gemella moribillum M424]
gi|316914845|gb|EFV36319.1| ComE operon protein 2 [Gemella moribillum M424]
Length = 154
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + S T + SV IVKD ++ G + G
Sbjct: 1 MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YVT PC +
Sbjct: 58 CKVVEGHCVRTIHAEINAILQCSRFGVGTEGATIYVTHFPCLNC 101
>gi|241203269|ref|YP_002974365.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857159|gb|ACS54826.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 145
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 1 MEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRELKDVTAHAEIAAIRLACEA 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 59 LGQERLAGADLYVTLEPCTMC 79
>gi|329770386|ref|ZP_08261768.1| ComE operon protein 2 [Gemella sanguinis M325]
gi|328836509|gb|EGF86169.1| ComE operon protein 2 [Gemella sanguinis M325]
Length = 154
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + S T + SV IVKD +I G + G
Sbjct: 1 MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIIAGGYNGSIKGDEHCIDVG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YVT PC +
Sbjct: 58 CKVIEGHCVRTIHAEINAILQCSKFGVCTEGATIYVTHFPCLNC 101
>gi|292670885|ref|ZP_06604311.1| deaminase [Selenomonas noxia ATCC 43541]
gi|292647506|gb|EFF65478.1| deaminase [Selenomonas noxia ATCC 43541]
Length = 179
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALEEA 63
M AL ++ +G + +I+ K G +I RG T + HAE+ A+ A
Sbjct: 33 MRMALEEAKHAYALGEV----PIGAVIIDKAGTLIARGCNLRETQHDATAHAELIAIRRA 88
Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
+ T YVT+EPC + ++
Sbjct: 89 CKSLGRWRLTEMTLYVTIEPCPMCAGAIVMSRISRIVY 126
>gi|302870406|ref|YP_003839043.1| CMP/dCMP deaminase [Micromonospora aurantiaca ATCC 27029]
gi|302573265|gb|ADL49467.1| CMP/dCMP deaminase zinc-binding [Micromonospora aurantiaca ATCC
27029]
Length = 210
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 7 DARFMSAALRFSRWH-----VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAE 56
+M AL + + + V ++ DG + G HAE
Sbjct: 60 HELWMRRALEVAVTGPDGPAADRDADDVPVGAVLYGPDGTELAIGRNERELTGDPTAHAE 119
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V AL A + T VTLEPC+
Sbjct: 120 VLALRRAAQRLGRWRLDDCTLVVTLEPCTMC 150
>gi|313836183|gb|EFS73897.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA2]
gi|314927620|gb|EFS91451.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL044PA1]
gi|314971383|gb|EFT15481.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA3]
gi|328906319|gb|EGG26094.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium sp. P08]
Length = 152
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 40/133 (30%), Gaps = 39/133 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 10 TVPDWDEYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66
Query: 54 ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
HAEV AL A + G+TAYVT +PCS ++
Sbjct: 67 PRGQLGYGEVPAFSDYDVPGSPGFCIAIHAEVNALLFATRDTAGSTAYVTDKPCSGCRKA 126
Query: 86 PPCAQFIIECGIR 98
A +
Sbjct: 127 LAAAGVVRAVWPD 139
>gi|17555996|ref|NP_499418.1| hypothetical protein Y48A6B.7 [Caenorhabditis elegans]
gi|3881060|emb|CAA19531.1| C. elegans protein Y48A6B.7, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 168
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAE 56
P+ A M+ A+ + V ++V +G V+ +G HAE
Sbjct: 9 PLPPHHAEHMAEAVAEACRGV-ECGDGGPFGAVVVDSNGKVVAKGHNMVLVTKDPTMHAE 67
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A++ A + + G Y + PC
Sbjct: 68 MTAIKNACKALGTFDLSGHILYTSCYPCPMC 98
>gi|255693462|ref|ZP_05417137.1| guanine deaminase [Bacteroides finegoldii DSM 17565]
gi|260620746|gb|EEX43617.1| guanine deaminase [Bacteroides finegoldii DSM 17565]
Length = 156
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEE 62
M A+ S+ ++ +I K+G ++ GV HAEV A+
Sbjct: 4 EELMRKAIELSKENIENGGG--PFGAVIATKEGEIVATGVNRVTASCDPTAHAEVSAIRA 61
Query: 63 AGEE-----ARGATAYVTLEPCSHY 82
A + G Y + EPC
Sbjct: 62 AAAKLGTFNLSGYEIYTSCEPCPMC 86
>gi|225557684|gb|EEH05969.1| deoxycytidylate deaminase [Ajellomyces capsulatus G186AR]
Length = 356
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C++V+ V+ G GGCP
Sbjct: 186 WDQYFMQLASLAAQRSNCMKR---RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 242
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GAT Y PC
Sbjct: 243 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCLTCS 289
>gi|120403479|ref|YP_953308.1| hypothetical protein Mvan_2490 [Mycobacterium vanbaalenii PYR-1]
gi|119956297|gb|ABM13302.1| bifunctional deaminase-reductase domain protein [Mycobacterium
vanbaalenii PYR-1]
Length = 264
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
RG+ +L EGG + F L+D + L + +++G G G + + +
Sbjct: 181 AERGLVRVLTEGGPGILGMFTEQDLLDELCLTVAPLLLGGGSARIVTGLGEVRSDLALLH 240
Query: 343 RDYFGSD---VCLEYIGKNL 359
D + L Y+ L
Sbjct: 241 A--LTDDRGFLYLRYVRDRL 258
>gi|71003327|ref|XP_756344.1| hypothetical protein UM00197.1 [Ustilago maydis 521]
gi|46096349|gb|EAK81582.1| hypothetical protein UM00197.1 [Ustilago maydis 521]
Length = 1260
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 27/105 (25%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
S D ++M AL ++ + + V + V+ G VI RG HAE++A
Sbjct: 931 SEEDIKWMREALVMAQEALD--ANEVPVGGVFVRKGEVIARGRNRTNELMNATRHAELEA 988
Query: 60 LEEA--------------------GEEA-RGATAYVTLEPCSHYG 83
++ G+ + T YVT+EPC G
Sbjct: 989 IDHILSVMPPSAPDFAVAPHSGPEGDNPFKDTTLYVTIEPCIMCG 1033
>gi|45198541|ref|NP_985570.1| AFR023Wp [Ashbya gossypii ATCC 10895]
gi|44984492|gb|AAS53394.1| AFR023Wp [Ashbya gossypii ATCC 10895]
Length = 300
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 33/108 (30%), Gaps = 35/108 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D FM A + + V C+IV+ VI G G P
Sbjct: 151 AWDVYFMQLARLAASRSNCMKR---RVGCVIVRACRVIATGY---NGTPRHLRNCHDGGC 204
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 205 ARCNGGGSALHTCLCLHAEENALLEAGRERVGEGAVLYCDTCPCLTCS 252
>gi|85858030|ref|YP_460232.1| deoxycytidylate deaminase [Syntrophus aciditrophicus SB]
gi|85721121|gb|ABC76064.1| deoxycytidylate deaminase [Syntrophus aciditrophicus SB]
Length = 150
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 33/114 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
+D F+ A +R T +V ++V++ ++ G
Sbjct: 6 SRPEWDVYFLDIAALVARRS---TCLRRNVGAVLVRERRILSTGYNGAPSGLRHCLDIGC 62
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PC +
Sbjct: 63 LRDQLQVPSGERHELCRGLHAEQNAIIQAALHGVGIAGATLYCTNQPCVICAKM 116
>gi|157963093|ref|YP_001503127.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345]
gi|157848093|gb|ABV88592.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345]
Length = 144
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I +D ++ G Y G
Sbjct: 2 MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLSTVHSPQPSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWADKIKISQDMFDQAGVKVDWMQ 142
>gi|297582578|ref|YP_003698358.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
gi|297141035|gb|ADH97792.1| CMP/dCMP deaminase zinc-binding protein [Bacillus
selenitireducens MLS10]
Length = 152
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58
+ +A FM A+ ++ N ++VKDG V+ RG HAE+
Sbjct: 1 MEKTEAYFMKQAIDLAKRAREE--GNEPFGAILVKDGEVVMRGANHIHSGSDPTFHAELG 58
Query: 59 ALEEAG-----EEARGATAYVTLEPCSHYG 83
+ + T Y + EPC
Sbjct: 59 LIRAYCSAYQVSDLSEYTLYTSCEPCVMCS 88
>gi|160883688|ref|ZP_02064691.1| hypothetical protein BACOVA_01660 [Bacteroides ovatus ATCC 8483]
gi|260170907|ref|ZP_05757319.1| cytidine/deoxycytidylate deaminase [Bacteroides sp. D2]
gi|293369917|ref|ZP_06616489.1| guanine deaminase [Bacteroides ovatus SD CMC 3f]
gi|299146282|ref|ZP_07039350.1| guanine deaminase [Bacteroides sp. 3_1_23]
gi|315919237|ref|ZP_07915477.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156110773|gb|EDO12518.1| hypothetical protein BACOVA_01660 [Bacteroides ovatus ATCC 8483]
gi|292634999|gb|EFF53519.1| guanine deaminase [Bacteroides ovatus SD CMC 3f]
gi|298516773|gb|EFI40654.1| guanine deaminase [Bacteroides sp. 3_1_23]
gi|313693112|gb|EFS29947.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 156
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEV 57
++ D M A+ S+ +V +I K+G ++ GV HAEV
Sbjct: 1 MTREDL--MRKAIELSKENVENGGG--PFGAVIATKEGEIVATGVNRVTASCDPTAHAEV 56
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A + G Y + EPC
Sbjct: 57 SAIRAAAAKLGTFNLSGYEIYTSCEPCPMC 86
>gi|118618636|ref|YP_906968.1| hypothetical protein MUL_3305 [Mycobacterium ulcerans Agy99]
gi|118570746|gb|ABL05497.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium ulcerans Agy99]
Length = 260
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
LL L GRG+ +L EGG + S I L+D + L + +V+G G L+
Sbjct: 180 LLARLAGRGMRCILTEGGPTLFGSLIEQDLLDELCLTIAPVVVGGLPRRIASGPGQLQTR 239
Query: 338 FMCVRRDYFGSD---VCLEYIG 356
C D + Y+
Sbjct: 240 MHCAHV--ITDDAGYLYTRYVR 259
>gi|325095421|gb|EGC48731.1| deoxycytidylate deaminase [Ajellomyces capsulatus H88]
Length = 356
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C++V+ V+ G GGCP
Sbjct: 186 WDQYFMQLASLAAQRSNCMKR---RVGCVLVRGRRVMSTGYNGTPRNTKNCNEGGCPRCN 242
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GAT Y PC
Sbjct: 243 CGEGGGAALSTCLCIHAEENALLEAGRERIGEGATLYCNTCPCLTCS 289
>gi|163852551|ref|YP_001640594.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
gi|163664156|gb|ABY31523.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
Length = 153
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
++ A L + G +IV+DG VI R HAE+
Sbjct: 2 PDHESYLREATELALANVAEGGR----PYGAVIVRDGEVIARAANRIHATNDPSDHAEMV 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ A + + Y + PC
Sbjct: 58 AIRAASQQLGRPKLDDCIVYASGRPCPMCH 87
>gi|83591205|ref|YP_431214.1| CMP/dCMP deaminase, zinc-binding [Moorella thermoacetica ATCC
39073]
gi|83574119|gb|ABC20671.1| CMP/dCMP deaminase, zinc-binding protein [Moorella thermoacetica
ATCC 39073]
Length = 135
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 23/98 (23%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D F+ A + + T +V ++VKD + G G G P
Sbjct: 4 EWDEYFLDIAFQVASRS---TCNRLAVGAVVVKDKRIKGTGYNGAPHGLPHCLEVGCLME 60
Query: 54 --------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAE+ AL E EE +GAT YVT PC
Sbjct: 61 GEHCLRTIHAEINALLECSPEERQGATMYVTDYPCERC 98
>gi|325092207|gb|EGC45517.1| riboflavin-specific deaminase [Ajellomyces capsulatus H88]
Length = 684
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT
Sbjct: 385 PRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTA 444
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+ D+P L CR + P II+DP + D + + AP ++
Sbjct: 445 MVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVV 504
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+TS+++EGGA V
Sbjct: 505 VSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVI 564
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G+GG+ + N ++ G D
Sbjct: 565 SELLNPEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQD 624
Query: 350 VCL 352
V +
Sbjct: 625 VVM 627
>gi|5726586|gb|AAD48481.1|AF170104_9 unknown [Aliivibrio fischeri]
Length = 124
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 18/115 (15%)
Query: 31 VACLIVKDGIVIGRGVTAYG-G----------------CPHAEVQALEEAGEEARGATAY 73
V +I K ++ G Y G HAE A+ A + G +
Sbjct: 4 VGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAEENAILFAKRDLEGCDIW 63
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
VT PC + + SQ G+ V
Sbjct: 64 VTHFPCPNCAAKIIQTGISKVYCPEQTE-DFLSRWGEKIQVSQDMFSQAGVEVTW 117
>gi|50549399|ref|XP_502170.1| YALI0C23210p [Yarrowia lipolytica]
gi|49648037|emb|CAG82490.1| YALI0C23210p [Yarrowia lipolytica]
Length = 310
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 35/110 (31%), Gaps = 37/110 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+DA FM A + + V C+IV+D VI G G P
Sbjct: 161 SWDAYFMRLADLAAERSNCMKR---QVGCVIVRDSRVICTGY---NGTPRGAVNCNEGGC 214
Query: 54 ------------------HAEVQALEEAG-EEARG-ATAYVTLEPCSHYG 83
HAE AL EAG E R + Y PC
Sbjct: 215 ARCNSGEAGAALSTCLCLHAEENALLEAGRERIRDTSKLYCNTCPCLTCS 264
>gi|50553008|ref|XP_503914.1| YALI0E13728p [Yarrowia lipolytica]
gi|49649783|emb|CAG79507.1| YALI0E13728p [Yarrowia lipolytica]
Length = 222
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 46/198 (23%), Gaps = 13/198 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
+ + FM AL + + V C+ V +G VI RG+ G HAE +
Sbjct: 6 EYHSGFMEEALEQAELSLNNNEV--PVGCVFVHNGKVIARGMNDTNKSLCGTRHAEFLGI 63
Query: 61 EEA-----GEEARGATAYVTLEPCSHYGR--SPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
E + YVT+EPC + + S
Sbjct: 64 EHILKTHTADIFEEVDLYVTVEPCIMCASALRQLKIKCVYYGCANDRFGGCGSVMSIHSD 123
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173
+G+ + R + K + V
Sbjct: 124 KGVDPTYKAYPGFYREEAIMLLRRFYCQENENAPTEKKENKKQRELKTAFQPFDFTKYVH 183
Query: 174 ITGFISKNQVHLLRAQSD 191
+
Sbjct: 184 SEEEFVEVYGEEYLHLYQ 201
>gi|219122530|ref|XP_002181596.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406872|gb|EEC46810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 281
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 7/160 (4%)
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK- 229
+ P++G S H +RA D +L+G T+ D+P LT RL
Sbjct: 90 NFPLSGSDSLLLTHAIRASHDGVLIGGKTLSIDNPRLTNRLWDHDSLKLHAQPTSIVLDT 149
Query: 230 --LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285
++ S L P+I ++ + C L +L
Sbjct: 150 HLNNIQSLGDSMRLKHPIICCSKEAASSCKELPSSVVLLPCRCSKNGQIDLGDMLHKLYI 209
Query: 286 --GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G+ SL++EGG + SF++ +LVD + + + +G G
Sbjct: 210 GYGIKSLMIEGGPTLLKSFLDDQLVDCLCITIAPKFLGSG 249
>gi|154245980|ref|YP_001416938.1| deaminase-reductase domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154160065|gb|ABS67281.1| bifunctional deaminase-reductase domain protein [Xanthobacter
autotrophicus Py2]
Length = 282
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 4/217 (1%)
Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168
+ G + ++ + Y +R + ++ S D I
Sbjct: 6 HMLHLYGGREPMDDTTRRRSPHQATTSPEVAIYHPIHKGERPFVVAQLGQSLDGRIATPS 65
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
S I G + + +H LRA DA++VG+GTV+ADDP LT R + P R+I+DP
Sbjct: 66 GESKYINGPHALDHLHALRADVDAVVVGVGTVVADDPLLTVRRVAGRS--PARVIIDPSG 123
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ ++ +++ +A + + + + +L L RG+T
Sbjct: 124 RADPAARCFAPDGARRLVLRRTGVA--APVAEGVEVVAMEGAGAFEPAAMLDALAARGLT 181
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+LVEGGA +F+ + +D++ ++ S +++G G I
Sbjct: 182 RILVEGGAHTLSAFLEAGCLDALHVFVSPVILGAGRI 218
>gi|114046813|ref|YP_737363.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
gi|113888255|gb|ABI42306.1| tRNA-adenosine deaminase [Shewanella sp. MR-7]
Length = 222
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +M A+ + G V ++VK+G I G + C HAE+Q L
Sbjct: 59 DEHWMRVAMAMAEKAEAAGEV----PVGAVLVKEGQQIAAGYNLSISEHDPCAHAEIQCL 114
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
AG+ T YVTLEPC+
Sbjct: 115 RAAGQTIENYRLLDTTLYVTLEPCAMC 141
>gi|329767199|ref|ZP_08258726.1| ComE operon protein 2 [Gemella haemolysans M341]
gi|328836866|gb|EGF86513.1| ComE operon protein 2 [Gemella haemolysans M341]
Length = 153
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + S T + SV IVKD ++ G + G
Sbjct: 1 MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YVT PC +
Sbjct: 58 CKVVEGHCVRTIHAEINAILQCSKFGVGTEGATIYVTHFPCLNC 101
>gi|269793169|ref|YP_003318073.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100804|gb|ACZ19791.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 159
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
P S+D F+ A + + T +V ++V+D ++ G
Sbjct: 11 PRPSWDVYFLKIAEQVATRS---TCLRRAVGAVLVRDQYIVSTGYNGAPRGTTHCLDLGC 67
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
H E+ A+ +A G G T Y T EPCS
Sbjct: 68 LREQLGVPSGQRHEICRGSHGEINAICQAAAMGVSTAGCTLYCTHEPCSFC 118
>gi|319652245|ref|ZP_08006363.1| hypothetical protein HMPREF1013_02976 [Bacillus sp. 2_A_57_CT2]
gi|317396068|gb|EFV76788.1| hypothetical protein HMPREF1013_02976 [Bacillus sp. 2_A_57_CT2]
Length = 150
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQALEE 62
FM A+ + +V ++VK+ +I GV G HAE+ A+
Sbjct: 3 HFMKRAIELAINNVKDGGQ--PFGAVLVKEQDIIAEGVNELHKKHDVSG--HAELLAIRR 58
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A E + G T Y + EPC
Sbjct: 59 AQEQFQTNDLAGFTMYASGEPCPLC 83
>gi|241889824|ref|ZP_04777122.1| ComE operon protein 2 [Gemella haemolysans ATCC 10379]
gi|241863446|gb|EER67830.1| ComE operon protein 2 [Gemella haemolysans ATCC 10379]
Length = 153
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D FM+ + S T + SV IVKD ++ G + G
Sbjct: 1 MQRISWDEYFMAQSHLLSLRS---TCSRLSVGATIVKDKRIVSGGYNGSIKGDEHCIDVG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YVT PC +
Sbjct: 58 CKVVEGHCVRTIHAEINAILQCSKFGVGTEGATIYVTHFPCLNC 101
>gi|153837138|ref|ZP_01989805.1| deoxycytidylate deaminase [Vibrio parahaemolyticus AQ3810]
gi|149749555|gb|EDM60301.1| deoxycytidylate deaminase [Vibrio parahaemolyticus AQ3810]
Length = 154
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGISHVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 118 SRWGDKIQVSQDMFDQAGVEVDW 140
>gi|307565561|ref|ZP_07628041.1| guanine deaminase [Prevotella amnii CRIS 21A-A]
gi|307345720|gb|EFN91077.1| guanine deaminase [Prevotella amnii CRIS 21A-A]
Length = 155
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 19/85 (22%)
Query: 11 MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
M A+ S R G +I +G +I G HAE+ +
Sbjct: 7 MLRAIELSINSVRNGGG------PFGAVISHNGKIIAEGSNKVTINNDPTAHAEISTIRI 60
Query: 63 AGEEAR-----GATAYVTLEPCSHY 82
A E+ + G Y + EPC
Sbjct: 61 ACEKLKTFNLSGCEIYTSCEPCPMC 85
>gi|209809706|ref|YP_002265245.1| putative cytidine and deoxycytidylate deaminase [Aliivibrio
salmonicida LFI1238]
gi|21311445|gb|AAM46726.1|AF452135_11 RibG [Aliivibrio salmonicida]
gi|208011269|emb|CAQ81710.1| putative cytidine and deoxycytidylate deaminase [Aliivibrio
salmonicida LFI1238]
Length = 147
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
VS + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 VSKWAKRFFQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + +VT PC + +
Sbjct: 57 DRELKYLKTLHAEENAILFAKRDLEDCDIWVTHFPCPNCAAKIIQTGISKVYCPEQTE-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
SQ G+ V
Sbjct: 116 FLSRWGEKIQISQDMFSQAGVEVTW 140
>gi|281419672|ref|ZP_06250671.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
DSM 18205]
gi|281406201|gb|EFB36881.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri
DSM 18205]
Length = 150
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ V L+VKD ++I G G P
Sbjct: 7 KQTKLDLRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCE 60
Query: 54 ----------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 61 DNNVTKPYVLHAEANAITKLARSSNNSEGSTLYVTASPCIEC 102
>gi|210633850|ref|ZP_03297865.1| hypothetical protein COLSTE_01782 [Collinsella stercoris DSM 13279]
gi|210159019|gb|EEA89990.1| hypothetical protein COLSTE_01782 [Collinsella stercoris DSM 13279]
Length = 156
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 33/107 (30%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AA+ S N V I + ++ G G P
Sbjct: 10 SWDEFFMRAAVAASLRSK---DPNTQVGACIADTNNRILSVGY---NGTPSALNDDDFPW 63
Query: 54 ---------------HAEVQALEEAGEEAR---GATAYVTLEPCSHY 82
HAE A+ + GAT YVTL PC
Sbjct: 64 GTADDPLHDKHNYVIHAEANAILNYRGSLKDMAGATVYVTLFPCHEC 110
>gi|94263921|ref|ZP_01287724.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|94264246|ref|ZP_01288041.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93455357|gb|EAT05561.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93455666|gb|EAT05845.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
Length = 184
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYGGCP------ 53
+++ D ++M AL +R + + V +I G ++ G + P
Sbjct: 1 MTTTDEKWMGMALDEARGAL--AAGEFPVGAIIAHQGQMVASGRRQHSRGAAGPVAAPDT 58
Query: 54 ----------HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ AL + + RG T Y TLEPC
Sbjct: 59 TATEVANELDHAEMLALRQLLSRHPTADRRGLTLYATLEPCLMC 102
>gi|300361667|ref|ZP_07057844.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
JV-V03]
gi|300354286|gb|EFJ70157.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
JV-V03]
Length = 96
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV 41
D +M+ AL+ ++ T NP V +IVK+ +
Sbjct: 2 EKDQYYMNLALQEAKKGRFQTWKNPLVGAVIVKELKI 38
>gi|317132506|ref|YP_004091820.1| CMP/dCMP deaminase zinc-binding protein [Ethanoligenens
harbinense YUAN-3]
gi|315470485|gb|ADU27089.1| CMP/dCMP deaminase zinc-binding protein [Ethanoligenens
harbinense YUAN-3]
Length = 160
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 32/99 (32%), Gaps = 25/99 (25%)
Query: 1 MPVS--SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56
M V+ S +M AL + G + +IVKDG + G H
Sbjct: 1 MTVNTGSMHETWMRLALEQAERAGREGEV----PIGAVIVKDGAALAVGRNRRE-TDH-- 53
Query: 57 VQALEEA-------------GEEARGATAYVTLEPCSHY 82
AL A G T YVTLEPC
Sbjct: 54 -NALAHAEAEAIRAACAALGSWRLSGCTLYVTLEPCPMC 91
>gi|322711018|gb|EFZ02592.1| cytidine and deoxycytidylate deaminase [Metarhizium anisopliae
ARSEF 23]
Length = 168
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 8/126 (6%)
Query: 2 PVSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEV 57
+ D + M AL + S N V L+V DG V+ G T G HAE
Sbjct: 3 SRTEQDHKTLMRRALALAEKSPPKPS-NFRVGALLVNLYDGRVVAEGYTLECDGNTHAEE 61
Query: 58 QALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
+ E+ + P + Y PC + + V +R
Sbjct: 62 CCFIKLAEQHATKEEGLVGIIKTPHALYTTMEPCFKRLSGKLPCVERVLRQKSWIREVYL 121
Query: 115 GLQWLS 120
G+Q
Sbjct: 122 GVQEPE 127
>gi|255007771|ref|ZP_05279897.1| putative deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
gi|313145475|ref|ZP_07807668.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
gi|313134242|gb|EFR51602.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12]
Length = 145
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A +S V LIVKD ++I G G P
Sbjct: 7 KQSDLDKRYIRMAAIWSENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENICE 60
Query: 54 -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 61 DDNNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 103
>gi|87307959|ref|ZP_01090102.1| cytosine deaminase [Blastopirellula marina DSM 3645]
gi|87289573|gb|EAQ81464.1| cytosine deaminase [Blastopirellula marina DSM 3645]
Length = 145
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALE 61
D F+ A+ +R + + ++V DG V G+G G HAE+ LE
Sbjct: 1 MDE-FLKLAIEEARKGLAEGGI--PIGSVLVVDGQVRGQGHNRRVQKGSAILHAEMDCLE 57
Query: 62 EAG----EEARGATAYVTLEPCSHYG 83
AG ++ + A Y TL PC
Sbjct: 58 AAGRLTAKDYQRAVLYSTLSPCDMCS 83
>gi|299138415|ref|ZP_07031594.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
gi|298599661|gb|EFI55820.1| CMP/dCMP deaminase zinc-binding [Acidobacterium sp. MP5ACTX8]
Length = 182
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQA 59
D FM L + + V +IV G ++ RG HAE+ A
Sbjct: 7 PDDEAFMR--LAIAEARAAEAAGEVPVGAIIVSPTGEIVSRGNNQVLRTNDPTAHAEIVA 64
Query: 60 LEEAGEEAR---------GATAYVTLEPCSHY 82
L AG G T Y TLEPC+
Sbjct: 65 LRAAGLALDNYRLLTPEGGCTLYCTLEPCAMC 96
>gi|167625262|ref|YP_001675556.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4]
gi|167355284|gb|ABZ77897.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4]
Length = 143
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I +D ++ G Y G
Sbjct: 2 MTKWATRFLQMAELVASWSK---DPSTQVGAVITEDNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSGCEIWVTHFPCPNCAAKI-IQTGLSTVHSPKPSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWADKIKISQDMFDQAGVKVDWMQ 142
>gi|225555092|gb|EEH03385.1| riboflavin-specific deaminase [Ajellomyces capsulatus G186AR]
Length = 684
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT
Sbjct: 385 PRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGTETKLMTHYLRSRHDAILIGVGTA 444
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+ D+P L CR + P II+DP + D + + AP ++
Sbjct: 445 MVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVV 504
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+TS+++EGGA V
Sbjct: 505 VSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVI 564
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G+GG+ + N ++ G D
Sbjct: 565 SELLNPEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQD 624
Query: 350 VCL 352
V +
Sbjct: 625 VVM 627
>gi|300775315|ref|ZP_07085177.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
gi|300506055|gb|EFK37191.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910]
Length = 140
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 28/103 (27%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
++ FD ++ A +++ V LIVKD ++I G G P
Sbjct: 1 MNKFDKAYLKMAQEWAKLSYCKRK---QVGALIVKDRMIISDGY---NGTPSGFENCCED 54
Query: 54 ----------HAEVQALEE---AGEEARGATAYVTLEPCSHYG 83
HAE A+ + + + A+GAT Y+TL PC
Sbjct: 55 EEGKTHWYVLHAEANAILKLAASTQSAKGATLYLTLSPCKECS 97
>gi|318078667|ref|ZP_07985999.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF]
Length = 110
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCV 341
R V +L+EGGA +A +F+ + D ++ Y + +++G G + +
Sbjct: 29 RDVRGILLEGGARLAGAFVAAGYTDRVVGYLAPVLLGAGPAALTDAGIPTLTAALRLDVR 88
Query: 342 RRDYFGSDVCLEYIG 356
G D+ + +
Sbjct: 89 DSTRLGPDLRITAVP 103
>gi|260890091|ref|ZP_05901354.1| hypothetical protein GCWU000323_01253 [Leptotrichia hofstadii
F0254]
gi|260860114|gb|EEX74614.1| putative deoxycytidylate deaminase [Leptotrichia hofstadii F0254]
Length = 161
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A + V I+ D +IG G G P
Sbjct: 9 SWDEYFMGIAFLSGMRSK---DPSTQVGACIIDEDKKIIGIGY---NGFPMGSSDDSMPW 62
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + + T YVT PC+
Sbjct: 63 GKEGEFLETKYPYVVHAELNAILNSIKSLKKCTIYVTHFPCNEC 106
>gi|255324366|ref|ZP_05365485.1| tRNA-specific adenosine deaminase [Corynebacterium
tuberculostearicum SK141]
gi|255298585|gb|EET77883.1| tRNA-specific adenosine deaminase [Corynebacterium
tuberculostearicum SK141]
Length = 143
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRW-HVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL ++ G V ++ G + GV HAEV+A+ +A
Sbjct: 1 MRRALDVAKRTPAGDV----PVGAVLYDAAGTELATGVNRREELADPTAHAEVEAIRQAV 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G G VTLEPC+
Sbjct: 57 RVHGDGWRLSGCELVVTLEPCAMC 80
>gi|183984819|ref|YP_001853110.1| deaminase [Mycobacterium marinum M]
gi|183178145|gb|ACC43255.1| deaminase [Mycobacterium marinum M]
Length = 166
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F A+ +R +V A +IVKDG V+ HAE+ A+ A
Sbjct: 4 FAQRAIDLARQNVAEGGR--PFATVIVKDGQVLAESANKVAQTNDPTAHAEILAIRAACT 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E+ G T YV PC
Sbjct: 62 KLGTEQLFGTTFYVLAHPCPMC 83
>gi|32475570|ref|NP_868564.1| cytosine deaminase [Rhodopirellula baltica SH 1]
gi|32446112|emb|CAD75941.1| cytosine deaminase [Rhodopirellula baltica SH 1]
Length = 187
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
F+ AAL +R + + ++V D ++ RG G HAE+ LE AG
Sbjct: 42 FLQAALNEARLGLNEHGI--PIGSVLVIDNEIVSRGHNRRIQNGSSILHAEMDCLERAGR 99
Query: 66 EARG----ATAYVTLEPCSHYG 83
+T Y TL PC
Sbjct: 100 LTANDYSRSTLYSTLSPCDMCS 121
>gi|114052458|ref|NP_001040508.1| DCMP deaminase [Bombyx mori]
gi|95102556|gb|ABF51216.1| DCMP deaminase [Bombyx mori]
Length = 189
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
+ FM+ A ++ V IV D ++G G G P
Sbjct: 26 DWQEYFMAVAFLAAKRSK---DPKTQVGACIVNNDNKIVGIGY---NGMPIGCNDDDFPW 79
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + + + T YV L PC+ +
Sbjct: 80 GKNTPSPLDSKYLYVCHAEMNAILNKNSADVKDCTIYVGLFPCNECAKM 128
>gi|312885336|ref|ZP_07745000.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
gi|311302187|gb|EFQ79192.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM
18603]
Length = 148
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 13 AALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65
A+ S + G +IVKDG+VI R HAEV A+ A +
Sbjct: 1 MAIELSEHNVQQGQGGP---FGAVIVKDGMVIARSANRVVPQNDPTAHAEVSAIRLACQE 57
Query: 66 ----EARGATAYVTLEPCSHY 82
G Y + EPC
Sbjct: 58 LQSFSLEGCVIYTSCEPCPMC 78
>gi|118580396|ref|YP_901646.1| cytosine deaminase [Pelobacter propionicus DSM 2379]
gi|118503106|gb|ABK99588.1| Cytosine deaminase [Pelobacter propionicus DSM 2379]
Length = 145
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGC--PHAEVQALE 61
D FM AAL +R + + L+V G V+GRG G HAE+ ALE
Sbjct: 1 MDE-FMQAALEEARKGLAEGGI--PIGSLVVHRGAVLGRGHNRRVQKGSVILHAEMDALE 57
Query: 62 EAGEEA----RGATAYVTLEPCSHY 82
AG R + Y TL PC
Sbjct: 58 NAGRMPAAIYRESVLYTTLSPCPMC 82
>gi|194044048|ref|XP_001925118.1| PREDICTED: deoxycytidylate deaminase-like [Sus scrofa]
Length = 178
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAEN 73
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 74 ILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|168007071|ref|XP_001756232.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692742|gb|EDQ79098.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 185
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
V+ D F+S A+ + V ++VKD +I R HAEV
Sbjct: 26 VNERDYGFLSKAVEEAYEGV-RCGDGGPFGAVVVKDDQIIVRCHNMVLKNMDPTAHAEVT 84
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHY 82
A+ EA ++ Y + EPC
Sbjct: 85 AVREACKKLERYDLSDCEIYASCEPCPMC 113
>gi|154273018|ref|XP_001537361.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415873|gb|EDN11217.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 531
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + +TL A S D+ + + ++G +K H LR++ DAIL+G+G
Sbjct: 232 PRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGAA 291
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+ D+P L CR + P II+DP + D + + AP ++
Sbjct: 292 MVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVV 351
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+TS+++EGGA V
Sbjct: 352 VSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVI 411
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G+GG+ + N ++ G D
Sbjct: 412 SELLNPEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQD 471
Query: 350 VCL 352
V +
Sbjct: 472 VVM 474
>gi|58584428|ref|YP_198001.1| cytosine/adenosine deaminase [Wolbachia endosymbiont strain TRS
of Brugia malayi]
gi|58418744|gb|AAW70759.1| Cytosine/adenosine deaminase [Wolbachia endosymbiont strain TRS
of Brugia malayi]
Length = 143
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEAR- 68
M A+ ++ + +IV +I + HAE+ + +A E
Sbjct: 1 MEFAVEQAKLAKKNDEI--PIGAVIVSGDNIISFAHNISNDPTAHAEMLVIRQACELLST 58
Query: 69 ----GATAYVTLEPCSHY 82
A YVTLEPC
Sbjct: 59 SVLCNADMYVTLEPCPMC 76
>gi|325860320|ref|ZP_08173442.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
gi|325482199|gb|EGC85210.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A]
Length = 170
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ D R++ A ++ V L+VK+ ++I G G P
Sbjct: 20 SRAAVDYRYLRMAHIWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCE 73
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + G+T YVT PC
Sbjct: 74 DEAGVTKSYVLHAEANAITKLARSGNNSEGSTLYVTASPCIEC 116
>gi|301756412|ref|XP_002914055.1| PREDICTED: deoxycytidylate deaminase-like [Ailuropoda melanoleuca]
Length = 178
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDLLPWRRTAES 73
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 74 KLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|299115986|emb|CBN75987.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 284
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 34/105 (32%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----------- 53
+D FMS A + + V IV D ++G G G P
Sbjct: 128 WDDYFMSVAFLSAMRSK---DPSTQVGACIVNEDKRIVGIGY---NGFPMGCSDDDLPWA 181
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G YV L PC+
Sbjct: 182 RQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNEC 226
>gi|254568360|ref|XP_002491290.1| Subunit of tRNA-specific adenosine-34 deaminase [Pichia pastoris
GS115]
gi|238031087|emb|CAY69010.1| Subunit of tRNA-specific adenosine-34 deaminase [Pichia pastoris
GS115]
gi|328352193|emb|CCA38592.1| hypothetical protein PP7435_Chr2-0910 [Pichia pastoris CBS 7435]
Length = 220
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60
FM AL ++ + + C+ V +I +G G HAE++A+
Sbjct: 4 ETHFNFMKKALDAAQIALDELEV--PIGCIFVYKNKIIAQGSNKTNATSCGINHAEMEAI 61
Query: 61 EEA-------GEEARGATAYVTLEPCSHY 82
+E E A YVT+EPC
Sbjct: 62 DEIIAKYPNYKEILPFADLYVTVEPCIMC 90
>gi|163735385|ref|ZP_02142819.1| cytosine deaminase [Roseobacter litoralis Och 149]
gi|161391394|gb|EDQ15729.1| cytosine deaminase [Roseobacter litoralis Och 149]
Length = 150
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HA 55
M ++ D R + A ++ + ++ + G V+ +G G P H
Sbjct: 1 MTDMNDADIRLLRIAYDEAKAGFDEGG--CPIGSVLARGGEVVAQGRNQRVQKGDPIAHG 58
Query: 56 EVQALEEAG--EEARGATAYVTLEPCSHY 82
E+ AL +AG + R T Y +L PC
Sbjct: 59 EMDALRKAGRQKSYRDTTLYTSLSPCMMC 87
>gi|194333660|ref|YP_002015520.1| CMP/dCMP deaminase [Prosthecochloris aestuarii DSM 271]
gi|194311478|gb|ACF45873.1| CMP/dCMP deaminase zinc-binding [Prosthecochloris aestuarii DSM
271]
Length = 174
Score = 63.8 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP----------- 53
+ FMS A ++ + ++V+D ++ G G P
Sbjct: 28 WHEYFMSVAHLIAKRATCTRG---HIGAVVVRDNNILSTGYNGAPSGLPHCNETNCKIYR 84
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + A Y+T PC H
Sbjct: 85 SVHPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 132
>gi|94264510|ref|ZP_01288297.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93455069|gb|EAT05296.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
Length = 151
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
S+D FM+ ++ T V ++V++ ++ G
Sbjct: 9 SWDEYFMAITDLVAQRA---TCLRRQVGAVLVRERRIVATGYNGAPSHIRHCLEVGCLRQ 65
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +G+ Y T PCS +
Sbjct: 66 QQGVPSGERHELCRGLHAEQNAIIQAALHGVSLQGSVLYCTNMPCSICSKM 116
>gi|260900445|ref|ZP_05908840.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308106996|gb|EFO44536.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|328470945|gb|EGF41856.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus 10329]
Length = 154
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGISRVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 118 SRWGDKIQVSQDMFDQAGVEVDW 140
>gi|221198274|ref|ZP_03571320.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2M]
gi|221208213|ref|ZP_03581217.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2]
gi|221171861|gb|EEE04304.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2]
gi|221182206|gb|EEE14607.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD2M]
Length = 187
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ V+ RG G HAE+ AL A + + G YVTLEPC
Sbjct: 46 PVGAVLVRGDEVLARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 105
Query: 81 HY 82
Sbjct: 106 MC 107
>gi|198443277|pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
gi|198443278|pdb|3DH1|B Chain B, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
gi|198443279|pdb|3DH1|C Chain C, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
gi|198443280|pdb|3DH1|D Chain D, Crystal Structure Of Human Trna-Specific Adenosine-34
Deaminase Subunit Adat2
Length = 189
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 27 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 84
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 85 LDWCRQSGKSPSEVFEHTVLYVTVEPCIMC 114
>gi|113816713|gb|AAH37955.2| ADAT2 protein [Homo sapiens]
Length = 193
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 25 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 82
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 83 LDWCRQSGKSPSEVFEHTVLYVTVEPCIMC 112
>gi|269968353|ref|ZP_06182372.1| deoxycytidylate deaminase, putative [Vibrio alginolyticus 40B]
gi|269827039|gb|EEZ81354.1| deoxycytidylate deaminase, putative [Vibrio alginolyticus 40B]
Length = 156
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 39/146 (26%), Gaps = 22/146 (15%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G------- 51
M + S + RF A + W + V +I K ++ G Y G
Sbjct: 1 MTMISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDT 57
Query: 52 ---------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE A+ + + G +VT PC + I
Sbjct: 58 DERELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGISHVHCPEQSE 116
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 117 DFLSRWGDKIQVSQDMFDQAGVKVDW 142
>gi|288916305|ref|ZP_06410684.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
gi|288352284|gb|EFC86482.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f]
Length = 136
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 37/134 (27%), Gaps = 38/134 (28%)
Query: 1 MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------- 48
MP +D F+ A + V ++VK V G
Sbjct: 1 MPSPDRPDWDTYFLDIARAVAARGDCTRR---QVGAVLVKGSRVRSTGYNGTAPGRPGCL 57
Query: 49 --------------YGGCP-------HAEVQALEEA--GEEARGATAYVTLEPCSHYGRS 85
G P HAE AL A ++ G+T Y+T EPC+ +
Sbjct: 58 AGACPRGRKTTVEVPAGSPYDDCIATHAEANALLYADGRQDTEGSTLYLTTEPCAWCQKL 117
Query: 86 PPCAQFIIECGIRR 99
A
Sbjct: 118 IRAAGVAQVVWPGC 131
>gi|229815226|ref|ZP_04445562.1| hypothetical protein COLINT_02272 [Collinsella intestinalis DSM
13280]
gi|229809236|gb|EEP45002.1| hypothetical protein COLINT_02272 [Collinsella intestinalis DSM
13280]
Length = 156
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 33/107 (30%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM AA+ S N V I + ++ G G P
Sbjct: 10 SWDEFFMRAAVAASLRSK---DPNTQVGACIADTNNRILSVGY---NGTPSALNDDDFPW 63
Query: 54 ---------------HAEVQALEEAGEEAR---GATAYVTLEPCSHY 82
HAE A+ + GAT YVTL PC
Sbjct: 64 GTADDPLHDKHNYVIHAEANAILNYRGSLKDMAGATVYVTLFPCHEC 110
>gi|328463918|gb|EGF35436.1| hypothetical protein AAULH_01270 [Lactobacillus helveticus MTCC
5463]
Length = 358
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 34/145 (23%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY---------GRSPPCAQFIIECG 96
E+ A+ + G YVT PC + +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYNCCKSLFQAGVRKLIITLIIATIRW 125
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ V R+ G W +
Sbjct: 126 QCSCFMIVGYHMNRLKSIGNMWKAW 150
>gi|170746522|ref|YP_001752782.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
gi|170653044|gb|ACB22099.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
Length = 162
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +V+DG V+ HAE+ A+ A E G YVTLEPC
Sbjct: 37 PVGAAVVRDGTVLAVAHNRPRELHDPTAHAEILAIRAACATLGTERLVGCDLYVTLEPCP 96
Query: 81 HY 82
Sbjct: 97 MC 98
>gi|154150488|ref|YP_001404106.1| cytosine deaminase [Candidatus Methanoregula boonei 6A8]
gi|153999040|gb|ABS55463.1| Cytosine deaminase [Methanoregula boonei 6A8]
Length = 177
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEV 57
P+ F + + A+ +R + + ++V DG ++GRG HAE+
Sbjct: 27 PMDQFLEQNLQEAILEARKGLAEGGI--PIGSVLVIDGKIVGRGHNRRVQNNSAILHAEM 84
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHYG 83
LE AG + AT + TL PC
Sbjct: 85 DCLENAGRRTPKEYKRATLFSTLSPCDMCS 114
>gi|126659190|ref|ZP_01730328.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Cyanothece sp. CCY0110]
gi|126619495|gb|EAZ90226.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Cyanothece sp. CCY0110]
Length = 143
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
+FM AL ++ + ++V + +I RG H E+ L
Sbjct: 3 HEKFMREALVEAKKG------DLPYGAILVNNDEIIMRGYNTAQRDNDVSAHGEINVLRA 56
Query: 63 AGEE-------ARGATAYVTLEPCSHYGRSPP 87
++ + T Y T EPC +
Sbjct: 57 MTQKIGYSLDSLKNYTLYTTCEPCPMCAAACV 88
>gi|330719293|ref|ZP_08313893.1| ComE operon protein 2 [Leuconostoc fallax KCTC 3537]
Length = 153
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+D F++ A S T V +IVK+ +I G + G P
Sbjct: 8 SWDQYFIAQAAILSTRS---TCNRLHVGAIIVKNHRIIASGYNGSIAGTPHCTEVGDLIV 64
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GA YVT PC
Sbjct: 65 DGHCVRAVHAEQNALMQAAQMGISVDGAELYVTDMPCLQC 104
>gi|167540179|ref|XP_001741595.1| tRNA-specific adenosine deaminase [Entamoeba dispar SAW760]
gi|165893805|gb|EDR21932.1| tRNA-specific adenosine deaminase, putative [Entamoeba dispar
SAW760]
Length = 166
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 16/163 (9%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQ 58
D +M+ AL+ + + G V C+++ G ++ +G G HAE+
Sbjct: 3 DDKYYMNEALKMGQEALNIGEV----PVGCVVINSKGEIVAKGRNHTKEFQDGTQHAEIV 58
Query: 59 ALEEAGE---EARGATAYVTLEPCSHYGR--SPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
+ + E YVT EPC II +
Sbjct: 59 CINQLVEKHIRLNECILYVTCEPCIMCAEALKQCGITKIIYGCSNARFGGCGSVMTVIKS 118
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
+ + +M EG L + + + EK K
Sbjct: 119 SPYKSSHEINYCYHSLMGLEGLELLKCFFSMENEKAPEPNKKR 161
>gi|83775268|dbj|BAE65390.1| unnamed protein product [Aspergillus oryzae]
Length = 286
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTV
Sbjct: 22 PKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTV 81
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +I+DP + + + AP ++
Sbjct: 82 LADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVV 141
Query: 248 VTENDDPVLALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ K + +L L GV S+++EGG V
Sbjct: 142 VSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVL 201
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSD 349
+N + +DSII+ + +G GG+P + N V+ G +
Sbjct: 202 SELLNPEYTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQN 261
Query: 350 VCL 352
V +
Sbjct: 262 VIM 264
>gi|212638664|ref|YP_002315184.1| Late competence protein ComEB [Anoxybacillus flavithermus WK1]
gi|212560144|gb|ACJ33199.1| Late competence protein ComEB (DNA binding and uptake)
[Anoxybacillus flavithermus WK1]
Length = 155
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQC 101
>gi|262183239|ref|ZP_06042660.1| hypothetical protein CaurA7_04544 [Corynebacterium aurimucosum
ATCC 700975]
Length = 147
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 11 MSAALRFSRWHVGLTST--NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL +R T+ + V ++ G + GV HAEV+A+ +A
Sbjct: 1 MRRALEVAR-----TTPVGDIPVGAVLYDASGNELATGVNRREQLNDPTAHAEVEAIRQA 55
Query: 64 ------GEEARGATAYVTLEPCSHY 82
G G VTLEPC+
Sbjct: 56 VRVHGDGWRLEGCELVVTLEPCAMC 80
>gi|150865735|ref|XP_001385070.2| cytosine deaminase [Scheffersomyces stipitis CBS 6054]
gi|149386991|gb|ABN67041.2| cytosine deaminase [Scheffersomyces stipitis CBS 6054]
Length = 150
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
MP + D + M AL ++ P LI +DG V+GRG H E
Sbjct: 1 MPFN--DKKGMQIALEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNMRFQKDSAILHGE 57
Query: 57 VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCA 89
+ LE AG + T Y TL PC +
Sbjct: 58 MSVLENAGRLKGSVYKNCTMYTTLSPCHMCSGACLMY 94
>gi|320164019|gb|EFW40918.1| tRNA-specific adenosine deaminase 2 [Capsaspora owczarzaki ATCC
30864]
Length = 307
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPH 54
M V + RFM +AL + + P V C+IV + G VIGRG H
Sbjct: 12 MGVENLHERFMQSALDKAYEAL-EVGEVP-VGCVIVLRETGQVIGRGCNRTNETKNATRH 69
Query: 55 AEVQALEEA 63
AE +A++E
Sbjct: 70 AEFEAIDEV 78
>gi|321478485|gb|EFX89442.1| hypothetical protein DAPPUDRAFT_190827 [Daphnia pulex]
Length = 217
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 39/167 (23%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A + V I + ++G G G P
Sbjct: 59 EYFMAVAFLAAMRSK---DPCTQVGACITDSNNRIVGVGY---NGMPIGCSDEILPWGKN 112
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE+ A+ + + RG T YV L PC + I +
Sbjct: 113 SSQPLETKYMYVCHAEMNAIMNKNTADLRGCTLYVALFPC-----NECAKLIIQAGIKQV 167
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146
V + + + S G+ + + KI +
Sbjct: 168 VYMSDKHKNKPSTEASKMMFSMAGVKCQQFVPKNSKIVIDFEEIDWN 214
>gi|313683576|ref|YP_004061314.1| cmp/dcmp deaminase zinc-binding protein [Sulfuricurvum kujiense
DSM 16994]
gi|313156436|gb|ADR35114.1| CMP/dCMP deaminase zinc-binding protein [Sulfuricurvum kujiense
DSM 16994]
Length = 152
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
+M+ A + + ++ IV++G +I HAE+ + +A E
Sbjct: 4 WMAIARDEALKGM-DSNEGGPFGAAIVRNGSLIAAAHNEVLKSNDPTAHAEINVIRKASE 62
Query: 66 E-----ARGATAYVTLEPCSHY 82
+ Y T PC
Sbjct: 63 KLATYDLSDCVLYTTCYPCPMC 84
>gi|62901894|gb|AAY18898.1| deoxycytidylate deaminase [synthetic construct]
Length = 202
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 41 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 94
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 95 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 137
>gi|308497160|ref|XP_003110767.1| hypothetical protein CRE_04875 [Caenorhabditis remanei]
gi|308242647|gb|EFO86599.1| hypothetical protein CRE_04875 [Caenorhabditis remanei]
Length = 168
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAE 56
+ M A+ + V +IV K G V+ +G HAE
Sbjct: 9 SLPPHHKELMEEAVAEACRGV-ECGDGGPFGAVIVDKKGNVVAKGHNMVIVTNDPTMHAE 67
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A + + G T Y + PC
Sbjct: 68 MTAIRNACKALGTFDLSGHTLYTSCYPCPMC 98
>gi|15827698|ref|NP_301961.1| hypothetical protein ML1340 [Mycobacterium leprae TN]
gi|221230175|ref|YP_002503591.1| hypothetical protein MLBr_01340 [Mycobacterium leprae Br4923]
gi|2065234|emb|CAB08270.1| hypothetical protein MLC1351.23 [Mycobacterium leprae]
gi|13093249|emb|CAC31721.1| possible reductase [Mycobacterium leprae]
gi|219933282|emb|CAR71435.1| possible reductase [Mycobacterium leprae Br4923]
Length = 268
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ +L EGG + SFI ++D + L + +++G L C
Sbjct: 195 RGLRRVLTEGGPMLLGSFIQHGMLDELCLTIAPLIVGGRARRIATGPEQLLTRMRCAHV- 253
Query: 345 YFGSD---VCLEYIG 356
D + Y+
Sbjct: 254 -LTDDAGYLYTRYVK 267
>gi|84515288|ref|ZP_01002650.1| hypothetical protein SKA53_01481 [Loktanella vestfoldensis SKA53]
gi|84510571|gb|EAQ07026.1| hypothetical protein SKA53_01481 [Loktanella vestfoldensis SKA53]
Length = 148
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M AL +R G V +I +DG +I + HAE+ A+ A
Sbjct: 6 HMDIALTEARAAAARGEV----PVGAVITQDGAIIAQAGNRTRELNDPTAHAEMLAIRAA 61
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E G YVTLEPC
Sbjct: 62 CAALGQERLTGCDLYVTLEPCPMC 85
>gi|73748255|ref|YP_307494.1| putative deoxycytidylate deaminase [Dehalococcoides sp. CBDB1]
gi|147669037|ref|YP_001213855.1| CMP/dCMP deaminase, zinc-binding [Dehalococcoides sp. BAV1]
gi|289432306|ref|YP_003462179.1| CMP/dCMP deaminase zinc-binding protein [Dehalococcoides sp. GT]
gi|73659971|emb|CAI82578.1| putative deoxycytidylate deaminase [Dehalococcoides sp. CBDB1]
gi|146269985|gb|ABQ16977.1| CMP/dCMP deaminase, zinc-binding protein [Dehalococcoides sp. BAV1]
gi|288946026|gb|ADC73723.1| CMP/dCMP deaminase zinc-binding protein [Dehalococcoides sp. GT]
Length = 157
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M + D F+ A + T V + V+D ++ G
Sbjct: 1 MSRPNVDEYFLKIAAVVAERS---TCVRHHVGAVAVRDKHILSSGYNGAPAGLTDCLELG 57
Query: 48 ---AYGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE + +A G GAT Y T PC +
Sbjct: 58 CLRDQNGIPSGTRHEICRAVHAEQNVIIQASLHGTSLEGATVYATHTPCVLCAKM 112
>gi|327313504|ref|YP_004328941.1| putative dCMP deaminase [Prevotella denticola F0289]
gi|326946111|gb|AEA21996.1| putative dCMP deaminase [Prevotella denticola F0289]
Length = 170
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 38/149 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ D R++ A ++ V L+VK+ ++I G G P
Sbjct: 20 SRAAVDYRYLRMAHIWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCE 73
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE A+ +G + G+T YVT PC + I+
Sbjct: 74 DEAGVTKSYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE----------CAKLIIQA 123
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+ V + G+ L + GI V+
Sbjct: 124 GICRVVYAEKYRLTDGIDLLKRAGIEVEY 152
>gi|322690120|ref|YP_004209854.1| cytidine/deoxycytidine deaminase [Bifidobacterium longum subsp.
infantis 157F]
gi|320461456|dbj|BAJ72076.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
subsp. infantis 157F]
Length = 149
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 2 EYDEA-MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 59 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 118
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 119 DPHIGHSPEVHGG 131
>gi|320591187|gb|EFX03626.1| deoxycytidylate deaminase [Grosmannia clavigera kw1407]
Length = 387
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 42/115 (36%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+D FMS A ++ + V C++V++ V+ G G P
Sbjct: 227 SWDRYFMSLASLAAQRSNCMKR---RVGCVLVREHRVVSTGY---NGTPRGLRNCGEGGC 280
Query: 54 -------------------HAEVQALEEAGE------EARGATAYVTLEPCSHYG 83
HAE AL EAG Y PC
Sbjct: 281 GRCNGGFGAGLSLATCLCLHAEENALLEAGRERIPTASLANTILYCDTCPCLTCS 335
>gi|126666387|ref|ZP_01737366.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
ELB17]
gi|126629188|gb|EAZ99806.1| bifunctional deaminase-reductase-like protein [Marinobacter sp.
ELB17]
Length = 301
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 16/216 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ + + ++ S D I S I G +H +RA SDA++VG GT +AD+P+L
Sbjct: 80 QTTSVIGQLGQSLDGRIATVSGHSRFINGDDGIVHLHRIRALSDAVVVGAGTAVADNPQL 139
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK----- 262
T R + I S + T AP + + D +
Sbjct: 140 TVRRTSGDNPVRVVIDRRRRV---PASHHLFTDNAAPTLRLVAGDYQPGPKPKLQGLTSV 196
Query: 263 --KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
++L +L G+ + +EGG +F+ ++L+D + + + ++I
Sbjct: 197 LEVPCLGHNQQPVCPAQILAVLADFGLHKIFIEGGGVTVSAFLRAQLLDRLHVMVAPMII 256
Query: 321 GEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352
G G P+ +++ GSD+
Sbjct: 257 GS-GRPAFTLPEIDQLDDALRPRATMV-NLGSDMLF 290
>gi|322692072|ref|YP_004221642.1| cytidine/deoxycytidine deaminase [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456928|dbj|BAJ67550.1| putative cytidine/deoxycytidine deaminase [Bifidobacterium longum
subsp. longum JCM 1217]
Length = 149
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQA 59
+D M AL + + + V +++ G ++GRG G P HAE+ A
Sbjct: 2 EYDEA-MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIA 58
Query: 60 LEEAGE-----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVR 110
+ +A + T VTLEPC ++ + R
Sbjct: 59 MRQAAQALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPR 118
Query: 111 VSGRGLQWLSQKG 123
G G
Sbjct: 119 DPHIGHSPEVHGG 131
>gi|195110631|ref|XP_001999883.1| GI24773 [Drosophila mojavensis]
gi|193916477|gb|EDW15344.1| GI24773 [Drosophila mojavensis]
Length = 160
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 19/124 (15%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ V + VI RG HAE +
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFVHNDKVIARGGNEVNVHRNATRHAEFICI--- 56
Query: 64 GEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT Y + + + + V+ G +
Sbjct: 57 -----DATLAYCREKRLPARQVFSEISVVVTVEPCIMCSAALHTLAVKEIIYGCENDRFG 111
Query: 123 GIIV 126
G V
Sbjct: 112 GKTV 115
>gi|23098182|ref|NP_691648.1| hypothetical protein OB0727 [Oceanobacillus iheyensis HTE831]
gi|22776407|dbj|BAC12683.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 179
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ D V + +N N+I+ + + + + G + + G
Sbjct: 57 YQWLESQNVNEFPYKGKDCYVFSRKESGRNENVIFVNDDVKRFIQMLQKKEG-RDIWIVG 115
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G + SFI L+D I+ + I++G GIP +E N + F + L Y
Sbjct: 116 GGELLTSFIEQDLIDEYIITIAPIILG-EGIPLF-KECSSTINLSLIGTQKFNQFIELHY 173
Query: 355 IG 356
Sbjct: 174 ER 175
>gi|308491803|ref|XP_003108092.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
gi|308248940|gb|EFO92892.1| hypothetical protein CRE_10287 [Caenorhabditis remanei]
Length = 171
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQAL 60
D RF+ A ++ + V C+ V DG IG+G G P HAE+ A+
Sbjct: 7 DNDRRFLECAFNLAQEALD--GDEVPVGCVFVVDGKEIGKGRNRVNETGDPTRHAEMVAV 64
Query: 61 --------EEAGEEARGATAYVTLEPCSHYG 83
EE + R A YV+LEPC
Sbjct: 65 TEMWKKYGEECKDFLRRAVLYVSLEPCIMCS 95
>gi|224538415|ref|ZP_03678954.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519974|gb|EEF89079.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus
DSM 14838]
Length = 153
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCKRR---QVGALIVKDKMIISDGY---NGTPAGFENVCEDDN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIECS 105
>gi|191638477|ref|YP_001987643.1| ComE operon protein 2 [Lactobacillus casei BL23]
gi|227535031|ref|ZP_03965080.1| competence protein ComEB [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239631434|ref|ZP_04674465.1| ComE operon protein 2 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066532|ref|YP_003788555.1| comE operon protein 2 [Lactobacillus casei str. Zhang]
gi|190712779|emb|CAQ66785.1| ComE operon protein 2 [Lactobacillus casei BL23]
gi|227187346|gb|EEI67413.1| competence protein ComEB [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239525899|gb|EEQ64900.1| ComE operon protein 2 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300438939|gb|ADK18705.1| ComE operon protein 2 [Lactobacillus casei str. Zhang]
gi|327382511|gb|AEA53987.1| Transcriptional regulator, TetR family protein [Lactobacillus casei
LC2W]
gi|327385708|gb|AEA57182.1| Transcriptional regulator, TetR family protein [Lactobacillus casei
BD-II]
Length = 153
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP---------- 53
S+D F+ A + S +T V ++V++ +I G G P
Sbjct: 16 SWDQYFLELAEKVSERSTCERAT---VGAVLVQEHRIIATGYNGAISGDPHCDEAGHLMR 72
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YV PC +
Sbjct: 73 DGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLNC 112
>gi|109072525|ref|XP_001091638.1| PREDICTED: tRNA-specific adenosine deaminase 2 isoform 1 [Macaca
mulatta]
Length = 191
Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCRRSGKSPSEVFEHTVLYVTVEPCIMC 110
>gi|258623229|ref|ZP_05718238.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM573]
gi|258627669|ref|ZP_05722443.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM603]
gi|262173485|ref|ZP_06041162.1| deoxycytidylate deaminase [Vibrio mimicus MB-451]
gi|262403414|ref|ZP_06079972.1| deoxycytidylate deaminase [Vibrio sp. RC586]
gi|258580040|gb|EEW05015.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM603]
gi|258584527|gb|EEW09267.1| deoxycytidylate deaminase, putative [Vibrio mimicus VM573]
gi|261890843|gb|EEY36830.1| deoxycytidylate deaminase [Vibrio mimicus MB-451]
gi|262349918|gb|EEY99053.1| deoxycytidylate deaminase [Vibrio sp. RC586]
Length = 160
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 46/165 (27%), Gaps = 25/165 (15%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + +
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKIIQTGIAAVYCPEQSD-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148
Q G+ V+ + +E K L
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVNWLPLAELKHINTITLPTDNHC 160
>gi|148555238|ref|YP_001262820.1| tRNA-adenosine deaminase [Sphingomonas wittichii RW1]
gi|148500428|gb|ABQ68682.1| tRNA-adenosine deaminase [Sphingomonas wittichii RW1]
Length = 150
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +IV+ V+ A G HAE++A+ A + YVTLEPC+
Sbjct: 26 PVGAVIVRGDEVVAAAANAMCGGTDPTAHAEIEAIRAASARLGAQRLDDCDLYVTLEPCA 85
Query: 81 HY 82
Sbjct: 86 MC 87
>gi|302662333|ref|XP_003022823.1| hypothetical protein TRV_03047 [Trichophyton verrucosum HKI 0517]
gi|291186788|gb|EFE42205.1| hypothetical protein TRV_03047 [Trichophyton verrucosum HKI 0517]
Length = 298
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 24/79 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D FM A ++ + V C+IVKD V+ G G P
Sbjct: 189 AWDQYFMQLASLAAQRSNCMKR---RVGCVIVKDNRVMSTGY---NGTPRNMKNCNEGGF 242
Query: 54 -------HAEVQALEEAGE 65
HAE AL EA +
Sbjct: 243 LSTCLCMHAEENALLEAAQ 261
>gi|282881525|ref|ZP_06290195.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella timonensis CRIS 5C-B1]
gi|281304636|gb|EFA96726.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella timonensis CRIS 5C-B1]
Length = 140
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ V L+VKD +I G G P
Sbjct: 10 LDQRYLRMARIWAENSYCQRR---QVGALVVKDQRIISDGY---NGTPSGFENQCEDEQG 63
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + GAT YVT PC
Sbjct: 64 VTHPYVLHAEANAITKLARSSNNSDGATLYVTASPCIEC 102
>gi|254776005|ref|ZP_05217521.1| hypothetical protein MaviaA2_15235 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 254
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
RG+ +L EGG + +S + +L+D + L + ++G G L C
Sbjct: 180 ERGMRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRCAHV 239
Query: 344 DYFGSD---VCLEYIG 356
D + Y+
Sbjct: 240 --LTDDAGYLYTRYVR 253
>gi|163853270|ref|YP_001641313.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
gi|163664875|gb|ABY32242.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
Length = 147
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +V+DG V+ T HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAAVVRDGTVLAVAGNRPRTLSDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|118463485|ref|YP_882741.1| hypothetical protein MAV_3563 [Mycobacterium avium 104]
gi|118164772|gb|ABK65669.1| riboflavin biosynthesis protein RibD C- domain protein
[Mycobacterium avium 104]
Length = 254
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
RG+ +L EGG + +S + +L+D + L + ++G G L C
Sbjct: 180 ERGMRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRCAHV 239
Query: 344 DYFGSD---VCLEYIG 356
D + Y+
Sbjct: 240 --LTDDAGYLYTRYVR 253
>gi|313886183|ref|ZP_07819913.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
gi|332299700|ref|YP_004441621.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312924362|gb|EFR35141.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I]
gi|332176763|gb|AEE12453.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 161
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ V LIV + ++I G G P
Sbjct: 14 KQTILDRRYLRMARIWAENSYCRRR---QVGALIVHNQMIISDGY---NGTPSGFENVCE 67
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + G GAT Y+T PC
Sbjct: 68 DDEGITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLEC 110
>gi|41408889|ref|NP_961725.1| hypothetical protein MAP2791 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397248|gb|AAS05108.1| RibD [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 254
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
RG+ +L EGG + +S + +L+D + L + ++G G L C
Sbjct: 180 KRGMRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRCAHV 239
Query: 344 DYFGSD---VCLEYIG 356
D + Y+
Sbjct: 240 --LTDDAGYLYTRYVR 253
>gi|189467913|ref|ZP_03016698.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
17393]
gi|189436177|gb|EDV05162.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM
17393]
Length = 156
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCKRR---QVGALIVKDKMIISDGY---NGTPAGFENVCEDDN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIECS 105
>gi|254247929|ref|ZP_04941250.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Burkholderia cenocepacia PC184]
gi|124872705|gb|EAY64421.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Burkholderia cenocepacia PC184]
Length = 162
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ VI RG G HAE+ AL A + + G YVTLEPC
Sbjct: 21 PVGAVLVRGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 80
Query: 81 HY 82
Sbjct: 81 MC 82
>gi|194335892|ref|YP_002017686.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308369|gb|ACF43069.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
BU-1]
Length = 155
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 6 FDARF-MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
D + M A R + P V +++ +G VIGRG HAE+ A
Sbjct: 2 MDFAYCMELAFREAIKA-FERKEVP-VGAVVLDSNGHVIGRGYNQVEALCDSTAHAEMIA 59
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
L A + T VTLEPC
Sbjct: 60 LTSAMATLGSKYLNDCTLAVTLEPCPMC 87
>gi|256851752|ref|ZP_05557140.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 27-2-CHN]
gi|260661531|ref|ZP_05862443.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii
115-3-CHN]
gi|282933582|ref|ZP_06338952.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
gi|297205374|ref|ZP_06922770.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii JV-V16]
gi|256615710|gb|EEU20899.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii 27-2-CHN]
gi|260547588|gb|EEX23566.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii
115-3-CHN]
gi|281302325|gb|EFA94557.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
gi|297149952|gb|EFH30249.1| CMP/dCMP deaminase zinc-binding [Lactobacillus jensenii JV-V16]
Length = 150
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
D +FM A+ S+ V N ++VKD V+ TA HAE +
Sbjct: 3 DEKFMQEAIELSKKAVE--HGNEPFGAVLVKDNEVVFTNENQIFTANDPTFHAETGLIRR 60
Query: 63 AG-----EEARGATAYVTLEPCSHYG 83
+ T Y + EPC
Sbjct: 61 FCTSTGITDLSEYTLYTSCEPCFMCS 86
>gi|21673576|ref|NP_661641.1| deoxycytidylate deaminase, putative [Chlorobium tepidum TLS]
gi|21646688|gb|AAM71983.1| deoxycytidylate deaminase, putative [Chlorobium tepidum TLS]
Length = 175
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP----------- 53
+ FM A SR V +IV+D ++ G G P
Sbjct: 29 WHEYFMCVAHLISRRATCTRGH---VGAVIVRDNNILSTGYNGAPSGLPHCNETNCKIYR 85
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + A Y+T PC H
Sbjct: 86 SIHPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 133
>gi|53712256|ref|YP_098248.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
gi|60680433|ref|YP_210577.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
gi|253563708|ref|ZP_04841165.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
gi|265762444|ref|ZP_06091012.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
gi|52215121|dbj|BAD47714.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46]
gi|60491867|emb|CAH06625.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343]
gi|251947484|gb|EES87766.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5]
gi|263255052|gb|EEZ26398.1| ComE operon protein 2 [Bacteroides sp. 2_1_16]
gi|301161966|emb|CBW21510.1| putative deoxycytidylate deaminase [Bacteroides fragilis 638R]
Length = 145
Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A +S V LIVKD ++I G G P
Sbjct: 7 KQSDLDKRYIRMASIWSENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCE 60
Query: 54 -----------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 61 DDNNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 103
>gi|119386956|ref|YP_918011.1| CMP/dCMP deaminase, zinc-binding [Paracoccus denitrificans
PD1222]
gi|119377551|gb|ABL72315.1| CMP/dCMP deaminase, zinc-binding protein [Paracoccus
denitrificans PD1222]
Length = 157
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+S ++ A+ + +V ++V+DG V+ GV + HAE+
Sbjct: 1 MSDQAKHYLEQAVMLAHRNVQAGGR--PFGAVVVRDGEVLATGVNETVATHDPTAHAELV 58
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHY 82
AL A + + + +PC
Sbjct: 59 ALRAAALRLGSPDLSACVVHASGQPCPMC 87
>gi|332186892|ref|ZP_08388634.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
gi|332013225|gb|EGI55288.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
Length = 228
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---- 337
GV +LLVEGG F+ + L+D I + V G G PS G E N
Sbjct: 141 NRELGVKTLLVEGGGTANGEFLRAGLIDEISMALCPAVDGGAGAPSLFHSGDAEANTPAP 200
Query: 338 ---FMCVRRDYFGSD-VCLEYIGKN 358
+ + L Y +N
Sbjct: 201 VTSLTLTHHEVLEDGVIWLRYRVEN 225
>gi|291003336|ref|ZP_06561309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
Length = 250
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVR 342
RG+ + EGG + S + S LVD + L S ++ G G + + + +
Sbjct: 173 ERGLRRIGCEGGPTLFGSLVESDLVDELCLTMSPLLAGGDAGRIAKGTGVGVPRRMRLLS 232
Query: 343 RDYFGSD-VCLEYIG 356
+ + L Y
Sbjct: 233 ALHTDESLLLLRYAR 247
>gi|134098447|ref|YP_001104108.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
gi|133911070|emb|CAM01183.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharopolyspora erythraea NRRL 2338]
Length = 244
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVR 342
RG+ + EGG + S + S LVD + L S ++ G G + + + +
Sbjct: 167 ERGLRRIGCEGGPTLFGSLVESDLVDELCLTMSPLLAGGDAGRIAKGTGVGVPRRMRLLS 226
Query: 343 RDYFGSD-VCLEYIG 356
+ + L Y
Sbjct: 227 ALHTDESLLLLRYAR 241
>gi|85705168|ref|ZP_01036268.1| hypothetical protein ROS217_04635 [Roseovarius sp. 217]
gi|85670490|gb|EAQ25351.1| hypothetical protein ROS217_04635 [Roseovarius sp. 217]
Length = 147
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA 63
M AL +R G V +IV G+++ R HAE+ A+ A
Sbjct: 1 METALDEARAAALRGEV----PVGAVIVAPSGVLVARAGNRTRELSDPTAHAEILAIRAA 56
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 57 CAALGSERLTGHDLYVTLEPCAMC 80
>gi|91788312|ref|YP_549264.1| CMP/dCMP deaminase [Polaromonas sp. JS666]
gi|91697537|gb|ABE44366.1| CMP/dCMP deaminase, zinc-binding protein [Polaromonas sp. JS666]
Length = 461
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V+ G VI G A HAE+ AL A + +VTLEPC+
Sbjct: 24 PVGAVVVRHGEVIATGRNAPVDANDPTAHAEIVALRAAAQALGNYRLDECELFVTLEPCA 83
Query: 81 HYG 83
Sbjct: 84 MCS 86
>gi|33593821|ref|NP_881465.1| hypothetical protein BP2880 [Bordetella pertussis Tohama I]
gi|33563894|emb|CAE43152.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332383223|gb|AEE68070.1| hypothetical protein BPTD_2832 [Bordetella pertussis CS]
Length = 169
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 4 SSFDARFMSAALRFSR---WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ D + A+ +R G L+ KDG+V+ RGV + H E
Sbjct: 13 TPDDDALLREAIALARANARAGGR-----PFGALVAKDGVVLARGVNRMLADHDPTAHTE 67
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL EAG G Y + +PC
Sbjct: 68 LLALREAGRALRSARLDGCVVYASGQPCPMC 98
>gi|219852683|ref|YP_002467115.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
palustris E1-9c]
gi|219546942|gb|ACL17392.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
palustris E1-9c]
Length = 234
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 13/223 (5%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGS----VPITGFISKNQVHLLRAQSDAILVGIG 198
R H+ L ++ D + + S + ++ +H RA DAI+VG
Sbjct: 1 MPDDNARPHVLLMSEITADGKLTLKKGSSSKILMKYMAPETEVLLHQTRAACDAIMVGSN 60
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--L 256
T+ D+ LT R+ + P+R+I + LD+ ++ V + T +
Sbjct: 61 TIRIDNSFLTVRIVPGES--PLRVIPSSQADIPLDANVLGPDARTLVAVATSAPEEKIAA 118
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
A + + + V L++EGG + + +LVD I L
Sbjct: 119 IRAKGAMVVVAGDDHVDLSTLMHLLWRDFHVRRLMIEGGPTLNWHMLIHQLVDEIRLIHL 178
Query: 317 QIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEY 354
++G PS + +++ G+++ EY
Sbjct: 179 PFIVGGADTPSLVGGMHIDSEDQMIRLQLKNHYLCGTNLVTEY 221
>gi|205374270|ref|ZP_03227069.1| hypothetical protein Bcoam_14139 [Bacillus coahuilensis m4-4]
Length = 186
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+D FM+ + + T T +V IV++ VI G + G
Sbjct: 1 MNRISWDQYFMAQSHLLALRS---TCTRLAVGATIVREKRVIAGGYNGSIAGGDHCIDNG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV A+ + G GA YVT PC
Sbjct: 58 CYVIENHCVRTIHAEVNAILQCAKFGVPTEGAELYVTHFPCLQC 101
>gi|123974614|ref|XP_001313908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123974616|ref|XP_001313909.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895852|gb|EAY01022.1| hypothetical protein TVAG_295560 [Trichomonas vaginalis G3]
gi|121895853|gb|EAY01023.1| hypothetical protein TVAG_295570 [Trichomonas vaginalis G3]
Length = 169
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 6/113 (5%)
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
+ I L + + S+ V+GG V S + LVD +
Sbjct: 56 QYKNYLRSKGISYIICGDHAIDWKLMLSKLKNTFHLKSIAVQGGGIVNWSLLRVGLVDEL 115
Query: 312 ILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
+ + G +P + F + G + V L Y K
Sbjct: 116 SYVVAPTIDGRSTDVSFIRRNPEDTDSPPLEFDLIDVQRVGDNGVWLRYAPKK 168
>gi|161524475|ref|YP_001579487.1| CMP/dCMP deaminase zinc-binding [Burkholderia multivorans ATCC
17616]
gi|221215505|ref|ZP_03588469.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD1]
gi|160341904|gb|ABX14990.1| CMP/dCMP deaminase zinc-binding [Burkholderia multivorans ATCC
17616]
gi|221164689|gb|EED97171.1| tRNA-specific adenosine deaminase [Burkholderia multivorans CGD1]
Length = 187
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ V+ RG G HAE+ AL A + + G YVTLEPC
Sbjct: 46 PVGAVLVRGDEVLARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 105
Query: 81 HY 82
Sbjct: 106 MC 107
>gi|154491043|ref|ZP_02030984.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
43184]
gi|154088791|gb|EDN87835.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC
43184]
Length = 144
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 10 ELDKRYLRMAAVWAENSYCKRR---QVGALIVKDQMIISDGY---NGTPSGFENVCEDEH 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + ++GAT YVT PC
Sbjct: 64 NVTKPYVLHAEANAITKVAASSNSSKGATIYVTSAPCIEC 103
>gi|308275014|emb|CBX31613.1| tRNA-specific adenosine deaminase [uncultured Desulfobacterium
sp.]
Length = 156
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPH 54
MPV + +M A++ ++ G P + ++V + G V+ T C H
Sbjct: 1 MPVIMNEHEAYMELAIKEAKKA-GQNCEVP-IGAILVDEKGQVVSLAHNSTITLCDPCAH 58
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL A T YVT+EPC
Sbjct: 59 AEILALRNACSIVGNYRLLNMTIYVTIEPCIMC 91
>gi|189424806|ref|YP_001951983.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
gi|189421065|gb|ACD95463.1| CMP/dCMP deaminase zinc-binding [Geobacter lovleyi SZ]
Length = 156
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D F+ L + T V L+VKD ++ G
Sbjct: 1 MARPSWDQYFIDITLLVATRS---TCLRRQVGALLVKDRNILATGYNGTPSGIRHCEETG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+T Y T PC +
Sbjct: 58 CLRERLKVPSGERHELCRGLHAEQNAIIQAARHGVNIDGSTLYCTTMPCIICTKM 112
>gi|27381264|ref|NP_772793.1| hypothetical protein blr6153 [Bradyrhizobium japonicum USDA 110]
gi|27354431|dbj|BAC51418.1| blr6153 [Bradyrhizobium japonicum USDA 110]
Length = 159
Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR---GVT-AYGGCPHAEVQA 59
+ D F+ + +R + T N C++V DG V+ G G HAE A
Sbjct: 4 ARDEHFLRLSFAVARRSL--THGNHPFGCVVVAADGKVLIETENGYMPDCDGTAHAERLA 61
Query: 60 LEEAG-----EEARGATAYVTLEPCSHY 82
+A E AT Y + EPC+
Sbjct: 62 ATQACRTLSREVLAEATLYSSAEPCAMC 89
>gi|299535731|ref|ZP_07049052.1| ComE operon protein 2 [Lysinibacillus fusiformis ZC1]
gi|298728931|gb|EFI69485.1| ComE operon protein 2 [Lysinibacillus fusiformis ZC1]
Length = 189
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 34/160 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++D FM+ + + T T +V +V+D +I G
Sbjct: 1 MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIEKG 57
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
HAE+ AL + G +GA YVT PC PC + II+ GI
Sbjct: 58 CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPCL------PCTKSIIQAGIE 111
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
RV D + + + ++ G+ V + E KI
Sbjct: 112 RVYYATDY---KNNPYAQELFAKAGVEVVHVPFDERKIDF 148
>gi|110632788|ref|YP_672996.1| CMP/dCMP deaminase, zinc-binding [Mesorhizobium sp. BNC1]
gi|110283772|gb|ABG61831.1| CMP/dCMP deaminase, zinc-binding protein [Chelativorans sp. BNC1]
Length = 171
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V+DG ++ HAE+ A+ A E GA YVTLEPC+
Sbjct: 46 PVGAVVVRDGRLLASAGNRTRELNDPTAHAEMLAIRAACEAEGAERLIGADLYVTLEPCA 105
Query: 81 HY 82
Sbjct: 106 MC 107
>gi|295399242|ref|ZP_06809224.1| ComE operon protein 2 [Geobacillus thermoglucosidasius C56-YS93]
gi|312110156|ref|YP_003988472.1| ComE operon protein 2 [Geobacillus sp. Y4.1MC1]
gi|294978708|gb|EFG54304.1| ComE operon protein 2 [Geobacillus thermoglucosidasius C56-YS93]
gi|311215257|gb|ADP73861.1| ComE operon protein 2 [Geobacillus sp. Y4.1MC1]
Length = 151
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYIIDGHCVRTIHAEMNAIIQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|260943049|ref|XP_002615823.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
gi|238851113|gb|EEQ40577.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720]
Length = 243
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 15/190 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +TL A S D+ I A I+ +K H LRA D+ILVGIGTVLADDP+L
Sbjct: 24 DRPFVTLTWAQSLDSRIAAAPGLQTKISHAETKTMTHYLRANHDSILVGIGTVLADDPKL 83
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL------------APVIIVTENDDPV 255
CR +++DPH K + A V +EN +
Sbjct: 84 NCRYGNSH---IRPVVVDPHGKWDYSKSTLHKVCAEGKGLAPFILVGAQVSPSSENKTNL 140
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A + I+ + +++L +L + + S+++EGGA V +S + S LVDS+I+
Sbjct: 141 SAQGGQFITIDFSLDRSLNWQRILHVLHQKDIASVMIEGGADVINSLLKSDLVDSVIVTV 200
Query: 316 SQIVIGEGGI 325
+ +G+ G+
Sbjct: 201 GPVFLGKDGV 210
>gi|11068000|gb|AAG28837.1| cytosine deaminase [Bifidobacterium longum]
Length = 143
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 16/127 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HAEVQALEEAGE 65
M AL + + + V +++ G ++GRG G P HAE+ A+ +A +
Sbjct: 1 MRCALELA--GQAAAAGDVPVGAVVLDAAGQIVGRGYNTREADGDPLAHAEIIAMRQAAQ 58
Query: 66 -----EARGATAYVTLEPCSHYG----RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
T VTLEPC ++ + R G
Sbjct: 59 ALGAWNLADCTLAVTLEPCPMCAGACIQTHIGTIAFGAWDPKLGACGSIWDIPRDPHIGH 118
Query: 117 QWLSQKG 123
G
Sbjct: 119 SPEVHGG 125
>gi|134024903|gb|AAI35110.1| Unknown (protein for IMAGE:7163502) [Danio rerio]
Length = 241
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 27/139 (19%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL--- 60
+M+ A + + G V CL+V + +IG+G HAE+ AL
Sbjct: 51 WMAKAFDMAVEALENGEV----PVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQV 106
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGRSPP------CAQFIIECGIRRVVVCVDD 106
++ E YVT+EPC + +D
Sbjct: 107 LDWCRLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 166
Query: 107 PDVRVSGRGLQWLSQKGII 125
+ G + G
Sbjct: 167 SSDHLPHTGTSFKCIAGYR 185
>gi|86134833|ref|ZP_01053415.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
gi|85821696|gb|EAQ42843.1| Deoxycytidylate deaminase [Polaribacter sp. MED152]
Length = 141
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ AL + + V LIVKD ++I G G P
Sbjct: 10 DKAYLRMALEWGKLSHCKRK---QVGALIVKDRMIISDGF---NGTPTGFDNCCEDENGA 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + A+ AT Y+TL PC+
Sbjct: 64 TKWEVLHAEANAILKVASSTQSAKNATLYITLSPCTQCS 102
>gi|254562307|ref|YP_003069402.1| Guanine deaminase [Methylobacterium extorquens DM4]
gi|254269585|emb|CAX25555.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Methylobacterium
extorquens DM4]
Length = 153
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
++ A + + G +IV+DG V+ R HAE+
Sbjct: 2 PDHESYLREATEIALANVAEGGR----PYGAVIVRDGEVVARAANRIHATNDPSDHAEMV 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ A + + Y + PC
Sbjct: 58 AIRAASQQLGRPKLDDCIVYASGRPCPMCH 87
>gi|72161280|ref|YP_288937.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
fusca YX]
gi|71915012|gb|AAZ54914.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
fusca YX]
Length = 239
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 13/225 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R + L A+S D I A + ++ ++V LRA DAILVG GT+ AD+P L
Sbjct: 14 ERPRVILSCAMSVDGYIDDASPERLRLSTEADFDEVDELRASCDAILVGAGTIRADNPRL 73
Query: 208 TCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LAL 258
R +++L L +++ T ++ V ++
Sbjct: 74 LVRSPERQQRRLAAGHPAHLRKVVLSTSGDLDPAARVFTTGDAGCLLYVADHAAEAARHR 133
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ ++ DL ++L L RGV LLVEGG AV +F+ L D + L +
Sbjct: 134 FAGTAGVEVVAAGAPDLDRVLADLARRGVRRLLVEGGGAVHTAFLTRNLADELRLAIAPF 193
Query: 319 VIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNL 359
+G+ P + V L Y+ +
Sbjct: 194 FVGDARAPRFVHPAVFPHRPGQPMRLVSARNVAGMAVLHYVLREE 238
>gi|224456420|ref|ZP_03664893.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254874186|ref|ZP_05246896.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254840185|gb|EET18621.1| zinc-binding domain-containing protein [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 72
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEAGEEARG 69
HAE+ L A +
Sbjct: 57 HAEILVLRSAALKLGN 72
>gi|45358432|ref|NP_987989.1| cytidine/deoxycytidylate deaminase [Methanococcus maripaludis S2]
gi|44921190|emb|CAF30425.1| Cytidine/deoxycytidylate deaminase, zinc-binding region related
protein [Methanococcus maripaludis S2]
Length = 141
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
M A++ + + + ++V + +IGRG HAE+ ALE AG
Sbjct: 1 MDEAVKEANLSLKEGGI--PIGAVLVYENKIIGRGHNRRVQNNSAILHAEMDALENAGRL 58
Query: 67 A----RGATAYVTLEPCSHYG 83
+ Y TL PC
Sbjct: 59 TSDVYKNCELYTTLSPCIMCS 79
>gi|327310583|ref|YP_004337480.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
[Thermoproteus uzoniensis 768-20]
gi|326947062|gb|AEA12168.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
[Thermoproteus uzoniensis 768-20]
Length = 217
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 10/217 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L AV+ D I S ++ + ++H LRA+ DA+LVG GTV D+P L
Sbjct: 1 MRPYVYLAAAVTVDGRIASKTGYSR-LSCPVDLKRLHALRAKVDAVLVGAGTVKIDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNIN 266
T R +P+R+I+D + +++ ++ V+ + V AL R +
Sbjct: 60 TVRYVE--GRNPVRVIVDGSLSVPQSARVFDSSAPTIVLTTEKAPREKVAALRERGVEVI 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI- 325
D L++ L L G+ S+LVEGG + ++ LVD +++ + G G
Sbjct: 118 QFPGDAVPLREALERLYASGIRSVLVEGGGRINWQMLSQCLVDELVITVTPYAFGAGTSL 177
Query: 326 ---PSPLEEGYLEKNFMCVRRDY--FGSDVCLEYIGK 357
P + + + G +V L Y +
Sbjct: 178 LEGPGYDDVESAPFRLRLLSAEICECGQEVVLRYRVE 214
>gi|124107608|ref|NP_872309.2| tRNA-specific adenosine deaminase 2 [Homo sapiens]
gi|74750199|sp|Q7Z6V5|ADAT2_HUMAN RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
gi|31652308|emb|CAD92490.1| novel protein similar to yeast and bacterial cytosine deaminase
[Homo sapiens]
gi|119568252|gb|EAW47867.1| deaminase domain containing 1, isoform CRA_a [Homo sapiens]
Length = 191
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCRQSGKSPSEVFEHTVLYVTVEPCIMC 110
>gi|315502712|ref|YP_004081599.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|315409331|gb|ADU07448.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 267
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 6/168 (3%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G V R P +++ L A + P+++ + P
Sbjct: 87 GYRAVRLSPERRAWRREQGLAEFPTLVVVSGSLDLDPAQAAFADAPVRPIVLTHADAVPP 146
Query: 256 LALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
LA I ++ L RG+ LL EGG + + + LVD
Sbjct: 147 PGLADVADVIRCGTDQADAPGRVDLVAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDE 206
Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
+ L + ++ G G + + ++ V L Y+
Sbjct: 207 LCLTVAPLLAGAGPGRITAGDASVPRHLPLRHVLAAADGVLMLRYVRD 254
>gi|254457747|ref|ZP_05071175.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
gi|207086539|gb|EDZ63823.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1]
Length = 147
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 36/135 (26%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D F++ A + ++ V +IVKDG ++ G G P
Sbjct: 4 DQNFINIAQELATASKCVSK---QVGAVIVKDGRILSTGY---NGTPAGFTNCCDHWNGE 57
Query: 54 --------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE+ A+ G GA+ +VTLEPCS ++ +
Sbjct: 58 YTPDHHEWSKTYEIHAEMNAIIWAARKGISIEGASIFVTLEPCSECSKNLIASGIKRIVY 117
Query: 97 IRRVVVCVDDPDVRV 111
+ D +
Sbjct: 118 AKEYEHTHSDTISKF 132
>gi|315503317|ref|YP_004082204.1| cmp/dcmp deaminase zinc-binding protein [Micromonospora sp. L5]
gi|315409936|gb|ADU08053.1| CMP/dCMP deaminase zinc-binding protein [Micromonospora sp. L5]
Length = 208
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNP---SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQ 58
+M AL + + + V ++ DG + G HAEV
Sbjct: 60 HELWMRRALEVAVTGPDDATPDADDVPVGAVLYGPDGAELAIGRNERELTGDPTAHAEVL 119
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL A + T VTLEPC+
Sbjct: 120 ALRRAAQRLGRWRLDDCTLVVTLEPCTMC 148
>gi|325676732|ref|ZP_08156406.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
gi|325552514|gb|EGD22202.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707]
Length = 263
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 31/286 (10%)
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM--MESEG 134
EPC+H GR+ PC++ +I+ GI V V DP+ + G L I V +
Sbjct: 2 EPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRAARIEVTGGLLADDAE 60
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ L A+L RQ R H+T K A + D A S ITG ++ +VH RA+ DAI+
Sbjct: 61 RGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEARARVHADRARLDAIV 120
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VG GTVLADDP LT R+ + + + + S AP +++ +D
Sbjct: 121 VGTGTVLADDPWLTARMPDGSLAPHQPLRVVVGNR-PVPSTARVLDDAAPTLVLRTHD-- 177
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ ++L+ L + +LVEGG +A +F+ + VD + Y
Sbjct: 178 --------------------VGEILSALADQD--DVLVEGGPRLAGAFLAAGAVDRVQAY 215
Query: 315 RSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +V+G G + + F + G D+ L I +
Sbjct: 216 IAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNLIPR 261
>gi|240281297|gb|EER44800.1| riboflavin-specific deaminase [Ajellomyces capsulatus H143]
Length = 611
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT
Sbjct: 312 PRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTA 371
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+ D+P L CR + P II+DP + D + + AP ++
Sbjct: 372 MVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPIGRWPADPECRLLKTAKEGKGKAPWVV 431
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+TS+++EGGA V
Sbjct: 432 VSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVI 491
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G+GG+ + N ++ G D
Sbjct: 492 SELLNPEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQD 551
Query: 350 VCL 352
V +
Sbjct: 552 VVM 554
>gi|145591565|ref|YP_001153567.1| hypothetical protein Pars_1352 [Pyrobaculum arsenaticum DSM 13514]
gi|145283333|gb|ABP50915.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Pyrobaculum arsenaticum DSM 13514]
Length = 224
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 10/217 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R + + AV+ D I S ++ ++H +RA DA++VG T + D+P L
Sbjct: 1 MRPRVYMMAAVTVDGRIASKTGYSK-LSCPYDLRRLHAMRAMVDAVVVGANTAITDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNIN 266
T R +P+R+++D + D ++ + L V + + L + +
Sbjct: 60 TVRYAE--GRNPIRVLIDGALRAPTDLRLFDRSALTIVFTTSKAPSEKIKELQEKGIEVV 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
+ D +++ L RGV +L+EGG F+ LVD +I+ + V G
Sbjct: 118 VTEGSAVDPAEVVAHLSKRGVEKVLLEGGGKTNWEFLKRCLVDELIITVTPYVFGRGVSL 177
Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+G + EE E + + G ++ L Y K
Sbjct: 178 VDGEGFADTEEAPFELRLIEAKLCQCGREIVLHYEVK 214
>gi|313836522|gb|EFS74236.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA2]
gi|314928976|gb|EFS92807.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL044PA1]
gi|314971034|gb|EFT15132.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA3]
Length = 156
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R + + +++ DG V+ HAEV A+ A
Sbjct: 8 MTQALDVARRAA--AWGDVPIGAVVLGSDGDVLSEAGNERELTGDPTAHAEVLAIRRAAE 65
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 66 ARDGWRLGDCTLIVTLEPCTMC 87
>gi|310831344|ref|YP_003969987.1| putative deoxycytidylate deaminase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386528|gb|ADO67388.1| putative deoxycytidylate deaminase [Cafeteria roenbergensis virus
BV-PW1]
Length = 144
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 21/113 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG------------- 51
++ F+S A+ S TS V C+IVK+ +I G +
Sbjct: 15 EWNDYFISIAILTSLRS---TSIKKKVGCVIVKNKRIIATGYNGFPPGVEHISILKEGKE 71
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE A+ + G + YVT PC + + + +
Sbjct: 72 INTIHAEQNAISQCAKMGISCENSVLYVTHYPCINCSKIIVASGISTIYYLHN 124
>gi|171186187|ref|YP_001795106.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermoproteus
neutrophilus V24Sta]
gi|170935399|gb|ACB40660.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Thermoproteus neutrophilus V24Sta]
Length = 217
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 10/217 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L A + D I S ++ ++H LRA DA++VG T + D+P L
Sbjct: 1 MRPYVYLAAAATIDGRIASKTGYSR-LSCPHDLRRLHALRAAVDAVIVGANTAIVDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNIN 266
T R +P+R+++D K D ++ ++ V + + L R +
Sbjct: 60 TVRYVE--GRNPLRVLIDGSLKAPTDLRMFDSSSPTIVFTTRKAPPEKAAELKARGVEVY 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323
+ D D ++L +L RGV L+EGG F++ LVD I+L + V G G
Sbjct: 118 VAEGDQVDPAEVLNVLYQRGVRKALLEGGGRTNWEFLSKCLVDEIVLTVTPYVFGSGVSL 177
Query: 324 --GIPSPLEEGY-LEKNFMCVRRDYFGSDVCLEYIGK 357
G P +E ++ G +V L Y +
Sbjct: 178 VEGAGFPTKEDAPFTLTLTSIKLCECGQEVVLTYRVR 214
>gi|181537|gb|AAA35755.1| deoxycytidylate deaminase [Homo sapiens]
Length = 178
Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 113
>gi|317121275|ref|YP_004101278.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
marianensis DSM 12885]
gi|315591255|gb|ADU50551.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
marianensis DSM 12885]
Length = 252
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 13/222 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
R ++ + + + D + M G + + ++ +
Sbjct: 27 PPHRPYVLINMVTTVDGKVTMGRGTVKEPIGSKVDHALMARLRAPVDAVLRGAGTVRAYD 86
Query: 206 ELTCRLNGLQEHSPMRIILDPHF--------KLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+ E R + L LD++ + A P+++
Sbjct: 87 VPPRVPDEYAERRQARGLPAQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPAEKV 146
Query: 258 LAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A R+ + + L + G+ LL EGG AV + + + +VD +
Sbjct: 147 EAVRQVADVAFAGEEKVEMRAALALLRERYGIRRLLSEGGPAVNFAMLEAGVVDELFWTV 206
Query: 316 SQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCLEY 354
+ ++G + + + ++ L Y
Sbjct: 207 APKIVGYAEDKTMVMGPHPLEPRIRLSLASAFFHEGELFLRY 248
>gi|240139885|ref|YP_002964362.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Methylobacterium
extorquens AM1]
gi|240009859|gb|ACS41085.1| Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Methylobacterium
extorquens AM1]
Length = 153
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60
++ A + +V +IV+DG V+ R HAE+ A+
Sbjct: 2 PNHESYLREATELALANVAEGGR--PYGAVIVRDGEVVARAANRIHATNDPSDHAEMVAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
A + + Y + PC
Sbjct: 60 RAASQQLGRPKLDDCIVYASGRPCPMCH 87
>gi|160896585|ref|YP_001562167.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
gi|160362169|gb|ABX33782.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
Length = 171
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 5 SFDAR---FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAE 56
S D R ++ A+ + N LIV DG V+ G HAE
Sbjct: 13 SLDERDGLYLRRAIAMADRARQR--GNRPFGALIVAADGRVLAEASNANGESGDCTAHAE 70
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
+ A+ A E AT Y + EPC
Sbjct: 71 LSAIRLASPLHDREALSAATLYSSAEPCVMC 101
>gi|109076283|ref|XP_001092119.1| PREDICTED: deoxycytidylate deaminase isoform 3 [Macaca mulatta]
gi|297293743|ref|XP_002804315.1| PREDICTED: deoxycytidylate deaminase [Macaca mulatta]
Length = 178
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDLLPWSRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 113
>gi|73979520|ref|XP_849027.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
isoform 1 [Canis familiaris]
Length = 178
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 17 EYFMAVAFLAAQRSK---DPNSQVGACIVNAENKIVGIGYNGMPNGCSDDHLPWERTAAS 73
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 74 KLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|262202204|ref|YP_003273412.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262085551|gb|ACY21519.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 263
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+L RG +L EGG + S + LVD + L S ++ +
Sbjct: 177 VLDRCAERGWHRVLCEGGPTLLGSLVTEDLVDEMCLTISPNLVSGDAGRIAHDRRPGVLR 236
Query: 338 FMCVRRDYFGSD--VCLEYIG 356
M D V ++
Sbjct: 237 SMRAETILTDDDGFVFSRWVR 257
>gi|160887077|ref|ZP_02068080.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
gi|237721349|ref|ZP_04551830.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
gi|260171610|ref|ZP_05758022.1| deoxycytidylate deaminase [Bacteroides sp. D2]
gi|293369429|ref|ZP_06616014.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CMC 3f]
gi|299148576|ref|ZP_07041638.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_23]
gi|315919924|ref|ZP_07916164.1| deoxycytidylate deaminase [Bacteroides sp. D2]
gi|156107488|gb|EDO09233.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483]
gi|229449145|gb|EEO54936.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4]
gi|292635596|gb|EFF54103.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CMC 3f]
gi|298513337|gb|EFI37224.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_23]
gi|313693799|gb|EFS30634.1| deoxycytidylate deaminase [Bacteroides sp. D2]
Length = 149
Score = 63.0 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 9 ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 63 NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|330988983|gb|EGH87086.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 224
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R +P+RII L +
Sbjct: 31 NDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRNPIRIIPTTSLDLPASAS 88
Query: 236 IIKTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I K+ + + + D V + K + D +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATTEQARDHDMVKHIRACGKEVLFAGAKHVDFTRLFPMLEARGIKHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGNLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGEG 188
>gi|297679305|ref|XP_002817478.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Pongo abelii]
Length = 191
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCLQSGKSPSEVFEHTVLYVTVEPCIMC 110
>gi|149375142|ref|ZP_01892914.1| bifunctional deaminase-reductase-like protein [Marinobacter
algicola DG893]
gi|149360506|gb|EDM48958.1| bifunctional deaminase-reductase-like protein [Marinobacter
algicola DG893]
Length = 290
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 11/212 (5%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
S + ++ S D I S I G +H LRA S+A++VG GT D+P LT
Sbjct: 74 SRVVGQMGQSLDGRIATVTGASKFINGEDGITHLHRLRAVSEAVIVGAGTASTDNPRLTV 133
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV----LALAFRKKNI 265
R +P+R+++D + ++ DS + + +P + + D
Sbjct: 134 RKTS--GINPVRVVIDRNHRVP-DSHHLFSDEASPTLRLVAGDYHAGDKLAPRHGVTDVP 190
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ D D +L +L G+ + VEGG F+N+ L+D + + + ++IG G
Sbjct: 191 CLGRDDTTDPAHILEVLADFGLRKIFVEGGGLTVSEFLNAALLDRLHVMVAPMIIGS-GR 249
Query: 326 PSPLEEGYLEKNFMCVRRDY---FGSDVCLEY 354
P+ + + + GSD+ +
Sbjct: 250 PAFSLPEIKKLDRALRPKAQMVDLGSDMLFDL 281
>gi|145219369|ref|YP_001130078.1| tRNA-adenosine deaminase [Prosthecochloris vibrioformis DSM 265]
gi|145205533|gb|ABP36576.1| tRNA-adenosine deaminase [Chlorobium phaeovibrioides DSM 265]
Length = 153
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHA 55
M S M A R + + P V +++ G V+G+G HA
Sbjct: 2 MDFS----YCMELAFREALKA-FESREVP-VGAVVLDGGGHVVGKGYNQVEALCDATAHA 55
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ AL A + + T VT+EPC
Sbjct: 56 EMIALTSAMATLGTKYLQDCTLAVTMEPCPMC 87
>gi|260774273|ref|ZP_05883188.1| putative deoxycytidylate deaminase [Vibrio metschnikovii CIP 69.14]
gi|260611234|gb|EEX36438.1| putative deoxycytidylate deaminase [Vibrio metschnikovii CIP 69.14]
Length = 157
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 41/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFYQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSANTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + I
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQSDD 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVNW 140
>gi|288800764|ref|ZP_06406221.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332225|gb|EFC70706.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 143
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ V ++VKD ++I G G P
Sbjct: 11 LDIRYLRMARIWAENSYCERRK---VGAIVVKDKMIISDGY---NGTPEGFENVCEDSNQ 64
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT YVT PC
Sbjct: 65 ITKPYVLHAEANAITKLARSSNNSEGATLYVTASPCIECS 104
>gi|152112361|sp|Q1RGK7|Y1426_RICBR RecName: Full=Uncharacterized deaminase RBE_1426
Length = 145
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL+ + S N V +IV + +I + HAE+ A+ EA
Sbjct: 1 MREALKQAEIAF---SKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEA 57
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 58 CRIISSKNLSDYDIYVTLEPCAMC 81
>gi|320164473|gb|EFW41372.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Capsaspora
owczarzaki ATCC 30864]
Length = 593
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R ++ L A S D I + I+G S H LRA+ ILVGI TVLAD+P L
Sbjct: 372 ERPYVVLSYAQSLDGCIAAEKGKPLAISGEASLVMTHRLRAEHAGILVGINTVLADNPSL 431
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL------AFR 261
T RL ++P I+LD H + L +K++ L P II + D A
Sbjct: 432 TVRLVS--GNNPQPIVLDTHLRFPLTAKLLTATPLKPWIITSLTADASREQRLVELGARV 489
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS--RLVDSIILYRSQIV 319
+ + L + L L G+ S++VEGGA+V SF+N L+D +++ + ++
Sbjct: 490 IRVPIDPATNSVSLVEALHALYRIGLPSVMVEGGASVIRSFLNHPSHLIDRLVVTIAPVI 549
Query: 320 IGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCL 352
+ G S L+ + V+ + FG DV L
Sbjct: 550 L--AGTHSTLDGKPQQPVALPQLRNVKYEQFGRDVVL 584
>gi|320107549|ref|YP_004183139.1| bifunctional deaminase-reductase domain-containing protein
[Terriglobus saanensis SP1PR4]
gi|319926070|gb|ADV83145.1| bifunctional deaminase-reductase domain protein [Terriglobus
saanensis SP1PR4]
Length = 226
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----- 331
+ + + +LL+EGG + +F+ ++L+D + L + + G +PS +
Sbjct: 140 AVDALADNFEIKTLLLEGGGHINGAFLEAKLLDEVSLLLAPGIDGRHDVPSVFDGLKGSE 199
Query: 332 GYLEKNFMCVRRDYFGSDVC-LEY 354
G+L + + G V L Y
Sbjct: 200 GHLATSLKLNSVEKLGDGVLWLRY 223
>gi|304405271|ref|ZP_07386931.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus
YK9]
gi|304346150|gb|EFM11984.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus
YK9]
Length = 172
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPH 54
MP S D +M A+ + G +V + VI H
Sbjct: 1 MPQSQDELDRMYMRQAVDCAME--GTQRMEFPFGACLVHNDRVIAIASNRCLSSKDPTMH 58
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ EA + AT Y T EPC
Sbjct: 59 AEMIAIREACGTLDRASLQQATLYATTEPCVMC 91
>gi|283783769|ref|YP_003374523.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Gardnerella vaginalis 409-05]
gi|283442021|gb|ADB14487.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Gardnerella vaginalis 409-05]
Length = 153
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCP 53
M + M+ AL +R G V +++ G +IG+G
Sbjct: 1 MNMRDEIVFAMNQALNLARESASAGEV----PVGAVVLDGSGNIIGKGANMREQSADPLA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAEV A+++A T VTLEPC
Sbjct: 57 HAEVLAMKDAATSRKSWNLSDCTLVVTLEPCPMC 90
>gi|28868061|ref|NP_790680.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851297|gb|AAO54375.1| ribD C-terminal domain protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331018395|gb|EGH98451.1| ribD C-terminal domain protein [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 224
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R +P+RII L +
Sbjct: 31 DDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRNPIRIIPTTSLDLPTSAS 88
Query: 236 IIKTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I K+ + + + + V + K + D +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATSEQARDHEMVKHIRACGKEVLFAGAKHVDFTRLFPMLEARGINHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGHLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGVG 188
>gi|322706817|gb|EFY98397.1| riboflavin biosynthesis protein Rib7 [Metarhizium anisopliae ARSEF
23]
Length = 546
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 92/233 (39%), Gaps = 29/233 (12%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +TL A S D+ + +A ++G SK H LR++ AILVG+ TVLAD+P L
Sbjct: 308 NRPFVTLTFATSLDSSLSLAPGVRTHLSGPGSKAMTHYLRSRHAAILVGVSTVLADNPGL 367
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA------------------PVIIVT 249
+CR+ P II+DPH + + S + P V
Sbjct: 368 SCRI-EGSASQPRPIIIDPHLRWTPRSSDQVFQICRSGAGLAPFILTGLLEAQIPRESVE 426
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSR 306
+ + + L+ G+TS++VEGG + +S + N
Sbjct: 427 LLQQHGGKYIRIAPATSSKDRVRFEWNDVFQTLLSEGLTSVMVEGGGQIINSLLSPTNHN 486
Query: 307 LVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRRDYFGSDVCL 352
L+DS+I+ + +G+GG+ V FG DV L
Sbjct: 487 LIDSVIVTIAPTWLGKGGVVVSPDRVCDAEGTPQAAARLSNVSWHPFGEDVVL 539
>gi|296446445|ref|ZP_06888389.1| CMP/dCMP deaminase zinc-binding [Methylosinus trichosporium OB3b]
gi|296256080|gb|EFH03163.1| CMP/dCMP deaminase zinc-binding [Methylosinus trichosporium OB3b]
Length = 183
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V IV++G +I HAE+ A+ A E YVTLEPC+
Sbjct: 59 PVGATIVRNGAIIAVAGNRTLRDRDPTAHAEMLAIRAACATLRTERLTDCDLYVTLEPCA 118
Query: 81 HY 82
Sbjct: 119 MC 120
>gi|225028456|ref|ZP_03717648.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
gi|224954206|gb|EEG35415.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353]
Length = 159
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+DA FM AL ++ N V IV ++ G
Sbjct: 8 SWDAYFMGVALLSAQRSKDN---NTQVGSCIVNPHNKILSMGYNGMPTGCNDDRMPWERK 64
Query: 51 GCP---------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ +G RGA Y TL PC+
Sbjct: 65 GTPLDTKYLYVCHAELNAILNYSGGSLRGARIYTTLFPCNEC 106
>gi|229816552|ref|ZP_04446851.1| hypothetical protein COLINT_03609 [Collinsella intestinalis DSM
13280]
gi|229807887|gb|EEP43690.1| hypothetical protein COLINT_03609 [Collinsella intestinalis DSM
13280]
Length = 632
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 1 MPVS----SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGC 52
MP D RFM P + ++V G +I R
Sbjct: 7 MPRPAVSREDDERFMRE-ALAEARAAAEVGEVP-IGAVVVHKGTIIARAHNRRELDEDPS 64
Query: 53 PHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
HAE A+ +A G T YVTLEPC
Sbjct: 65 AHAEFLAMMQAARTLGRWRLSGCTVYVTLEPCLMCS 100
>gi|138896089|ref|YP_001126542.1| late competence protein ComEB [Geobacillus thermodenitrificans
NG80-2]
gi|196248983|ref|ZP_03147683.1| ComE operon protein 2 [Geobacillus sp. G11MC16]
gi|134267602|gb|ABO67797.1| Late competence protein ComEB [Geobacillus thermodenitrificans
NG80-2]
gi|196211859|gb|EDY06618.1| ComE operon protein 2 [Geobacillus sp. G11MC16]
Length = 155
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERMTWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYVIDGHCVRTIHAEMNAILQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|91223974|ref|ZP_01259237.1| putative deoxycytidylate deaminase [Vibrio alginolyticus 12G01]
gi|254227760|ref|ZP_04921191.1| Deoxycytidylate deaminase [Vibrio sp. Ex25]
gi|262395803|ref|YP_003287656.1| deoxycytidylate deaminase [Vibrio sp. Ex25]
gi|91190885|gb|EAS77151.1| putative deoxycytidylate deaminase [Vibrio alginolyticus 12G01]
gi|151939802|gb|EDN58629.1| Deoxycytidylate deaminase [Vibrio sp. Ex25]
gi|262339397|gb|ACY53191.1| deoxycytidylate deaminase [Vibrio sp. Ex25]
Length = 154
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGISHVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 118 SRWGDKIQVSQDMFDQAGVKVDW 140
>gi|294793764|ref|ZP_06758901.1| probable deoxycytidylate deaminase [Veillonella sp. 3_1_44]
gi|294455334|gb|EFG23706.1| probable deoxycytidylate deaminase [Veillonella sp. 3_1_44]
Length = 159
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S++ FM A+ ++ N V IV D ++ G G P
Sbjct: 9 SWNEYFMGVAILAAQRSK---DPNTQVGACIVSNDNKILSIGY---NGMPLNCSDDDFTW 62
Query: 54 --------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 63 ERDTADDNKYFYTVHSELNAILNYRGGSLEGSKIYVTLFPCNEC 106
>gi|227824625|ref|ZP_03989457.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
gi|226905124|gb|EEH91042.1| CMP/dCMP deaminase [Acidaminococcus sp. D21]
Length = 153
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+DG VI R HAE+ + EA E+ R +T YVT+EPC
Sbjct: 29 PVGAILVQDGRVIARNHNRRERAHDATAHAEILVIREACEKLRRWRLADSTLYVTMEPCP 88
Query: 81 HY 82
Sbjct: 89 MC 90
>gi|242217142|ref|XP_002474373.1| predicted protein [Postia placenta Mad-698-R]
gi|220726480|gb|EED80428.1| predicted protein [Postia placenta Mad-698-R]
Length = 272
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 35/106 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
+DA FM A S + V ++V++ ++ G G P
Sbjct: 131 WDAYFMQLAELASERSNCMKR---RVGAILVRNKRILATGY---NGTPRGLTNCNEGGCT 184
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 185 RCNSGKEASDECVCLHAEENALLEAGRERVGDGAVLYCNTCPCLKC 230
>gi|126701100|ref|YP_001089997.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile 630]
gi|254977101|ref|ZP_05273573.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-66c26]
gi|255094429|ref|ZP_05323907.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile CIP 107932]
gi|255102686|ref|ZP_05331663.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-63q42]
gi|255308507|ref|ZP_05352678.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile ATCC 43255]
gi|255316181|ref|ZP_05357764.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-76w55]
gi|255518842|ref|ZP_05386518.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-97b34]
gi|255652021|ref|ZP_05398923.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-37x79]
gi|255657431|ref|ZP_05402840.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-23m63]
gi|260684996|ref|YP_003216281.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile CD196]
gi|260688654|ref|YP_003219788.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile R20291]
gi|296449027|ref|ZP_06890817.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296879850|ref|ZP_06903823.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
gi|306521763|ref|ZP_07408110.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile QCD-32g58]
gi|115252537|emb|CAJ70380.1| putative dCMP deaminase [Clostridium difficile]
gi|260211159|emb|CBA66608.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile CD196]
gi|260214671|emb|CBE07302.1| putative cytidine and deoxycytidylate deaminase [Clostridium
difficile R20291]
gi|296262120|gb|EFH08925.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296429139|gb|EFH15013.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
Length = 145
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 33/112 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A + T V +IV+D ++ G
Sbjct: 4 SWDEYFMEIAEVVKKRS---TCIRRQVGAVIVRDKQILTTGYNGSPRNLEHCENIGCKRQ 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSP 86
HAE A+ +A G GAT YVT PC +
Sbjct: 61 ELNIPSGERHELCRALHAEQNAIIQAAHNGISVDGATLYVTTRPCVLCAKMC 112
>gi|37676740|ref|NP_937136.1| deoxycytidylate deaminase [Vibrio vulnificus YJ016]
gi|37201283|dbj|BAC97106.1| deoxycytidylate deaminase [Vibrio vulnificus YJ016]
Length = 152
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCEIWVTHFPCPNCAAKI-IQTGISRVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
+Q G+ V+
Sbjct: 118 SRWGDKIAVSQDMFNQAGVEVNW 140
>gi|85702872|ref|ZP_01033976.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
gi|85671800|gb|EAQ26657.1| riboflavin specific deaminase, putative [Roseovarius sp. 217]
Length = 237
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 10/206 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+ +I S D + + ++G +H +RA DA++VG+ T L DDP LT
Sbjct: 14 PHVVAQIGQSLDGRVATVSGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALQDDPRLTV 73
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
RL +P R+++DP +L D+++ V+I T + +
Sbjct: 74 RLVA--GQNPARVVIDPSGRLPNDARLFADDGARRVVIQTVEKSRPAGVEVITLPRSQWI 131
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPS 327
++ L G+ LLVEGGA FI + L+ + + + ++IG G G+ +
Sbjct: 132 SPA----AIVAALRKLGLNHLLVEGGAITIARFIEADLLSRLHVAVAPLLIGAGPQGLTT 187
Query: 328 -PLEEGYLEKNFMCVRRDYFGSDVCL 352
P+ + + + GSDV
Sbjct: 188 QPIAKLAQARRPE-TQVYGLGSDVVF 212
>gi|320158842|ref|YP_004191220.1| DCMP deaminase [Vibrio vulnificus MO6-24/O]
gi|319934154|gb|ADV89017.1| DCMP deaminase [Vibrio vulnificus MO6-24/O]
Length = 152
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCEIWVTHFPCPNCAAKI-IQTGISRVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
+Q G+ V+
Sbjct: 118 SRWGDKIAVSQDMFNQAGVEVNW 140
>gi|319892646|ref|YP_004149521.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
pseudintermedius HKU10-03]
gi|317162342|gb|ADV05885.1| dCMP deaminase; Late competence protein ComEB [Staphylococcus
pseudintermedius HKU10-03]
Length = 153
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M + FM+ + + T T SV I KD +I G
Sbjct: 1 MKRIQWHEYFMAQSHLLALRS---TCTRLSVGATITKDNRIIAGGYNGSVSGEVHCIDEG 57
Query: 49 ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
GG HAE+ A+ + G AT YVT PC +
Sbjct: 58 CLMEGGHCIRTIHAEMNAILQCSKQGVSTENATIYVTHFPCLNC 101
>gi|260592105|ref|ZP_05857563.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
veroralis F0319]
gi|260535983|gb|EEX18600.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
veroralis F0319]
Length = 144
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 28/104 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A ++ V L+VKD ++I G G P
Sbjct: 4 KQSLLDYRYLRMARIWAENSYCRRR---QVGALVVKDKMIISDGY---NGTPSGFENICE 57
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT YVT PC
Sbjct: 58 DESGTTFPYVLHAEANAITKLARSSNNSDGATLYVTASPCIECS 101
>gi|28378749|ref|NP_785641.1| dCMP deaminase [Lactobacillus plantarum WCFS1]
gi|254556952|ref|YP_003063369.1| dCMP deaminase [Lactobacillus plantarum JDM1]
gi|300768267|ref|ZP_07078172.1| competence protein ComEB [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180941|ref|YP_003925069.1| dCMP deaminase [Lactobacillus plantarum subsp. plantarum ST-III]
gi|28271586|emb|CAD64491.1| dCMP deaminase [Lactobacillus plantarum WCFS1]
gi|254045879|gb|ACT62672.1| dCMP deaminase [Lactobacillus plantarum JDM1]
gi|300494331|gb|EFK29494.1| competence protein ComEB [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046432|gb|ADN98975.1| dCMP deaminase [Lactobacillus plantarum subsp. plantarum ST-III]
Length = 162
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM A+ + T SV IV+D +I G
Sbjct: 8 PWDQYFMMQAVLLASRS---TCERLSVGATIVRDKRIIAGGYNGSVSGDVHCIDEGCYLV 64
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 65 DGHCVRTIHAEMNAILQCAKFGAATDGAEIYVTDFPCLQCTKM 107
>gi|327191131|gb|EGE58176.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli CNPAF512]
Length = 145
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 1 MEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRERNDVTAHAEIAAIRLACEA 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 59 LGQERLAGADLYVTLEPCTMC 79
>gi|302205290|gb|ADL09632.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
C231]
Length = 182
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA- 63
M A+ ++ T + V +I DG V+GRGV HAE+ A+ EA
Sbjct: 40 MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 95
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 96 ANHDDGWRLTDCTLAVTLEPCTMC 119
>gi|282875983|ref|ZP_06284850.1| ComE operon protein 2 [Staphylococcus epidermidis SK135]
gi|281295008|gb|EFA87535.1| ComE operon protein 2 [Staphylococcus epidermidis SK135]
Length = 153
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + + T SV IVKD +I G + G
Sbjct: 1 MERIKWEEYFMAQSHLLALRS---TCKRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ L + G GAT YVT PC +
Sbjct: 58 CLIEDGHCIRTIHAEMNTLLQCAKQGVSTEGATIYVTHFPCLNC 101
>gi|255283094|ref|ZP_05347649.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
14469]
gi|255266396|gb|EET59601.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM
14469]
Length = 160
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A+ N V IV D ++ G
Sbjct: 9 SWDEYFMGVAMLSGMRSK---DPNTQVGACIVSSDNKILSMGYNGFPIGCSDDDFPWERE 65
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GAT YV+L PC+
Sbjct: 66 GEALDTKYLYTTHSELNAILNYRGGSLDGATLYVSLFPCNEC 107
>gi|218682181|ref|ZP_03529782.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli CIAT 894]
Length = 145
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 1 MEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLACEA 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 59 LGQERLAGADLYVTLEPCTMC 79
>gi|297191556|ref|ZP_06908954.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
gi|197719293|gb|EDY63201.1| deaminase [Streptomyces pristinaespiralis ATCC 25486]
Length = 167
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 19/94 (20%)
Query: 2 PVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCP 53
+ + +M A+ + G LIVKDG ++ G
Sbjct: 9 SIQELERTWMEEAIGLATASVENGGG------PFGALIVKDGEIVAIGNNKVTSNLDPTA 62
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
H EV A+ ++ G + EPC
Sbjct: 63 HGEVSAIRAGCQKLGTFSLEGCVLVTSCEPCPMC 96
>gi|114609579|ref|XP_518775.2| PREDICTED: hypothetical protein LOC463037 isoform 2 [Pan
troglodytes]
Length = 191
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+ ++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMHMAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 81 LDWCRQSGKSPSEVFEHTVLYVTVEPCIMC 110
>gi|302390580|ref|YP_003826401.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
oceani DSM 16646]
gi|302201208|gb|ADL08778.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter
oceani DSM 16646]
Length = 152
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A ++ T SV ++V + ++ G
Sbjct: 8 SWDDYFMEIAGVVAKRS---TCLRRSVGAVVVLEKRILTTGYNGAPTGLSHCGDVGCLRE 64
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GAT YVT +PC+ +
Sbjct: 65 KLRIPPGERHELCRGLHAEQNAIIQAAIWGTSIKGATIYVTHQPCALCAKM 115
>gi|292492106|ref|YP_003527545.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
halophilus Nc4]
gi|291580701|gb|ADE15158.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
halophilus Nc4]
Length = 364
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 16/252 (6%)
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQ---VEKRSHITLKIAVSQDNMIGMAGCGSVP 173
W +G + + + +++L ++ +A + D I A S
Sbjct: 107 PWCYSRGPALPCHLLTAFRLYLPCLTGHHIASQNHSPWVSGHLAQTLDGKIAAASGHSQW 166
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
I+ + H LRA DA+LVG T+ D+P LT R + + + H
Sbjct: 167 ISNHADRKHAHRLRALHDAVLVGRSTIEKDNPRLTVREVQGENPDRVVLDRHCHLLAGEK 226
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------RDLKKLLTILVG 284
I ++ + + D V + + + DLK +L +
Sbjct: 227 LYRIFHEPGNNWLLHSGSLDKVTERYPIPEKVTPLPIRNQEGKNDSKIMDLKAVLEAIWS 286
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCV 341
G+ S+ VEGG F+ + D + L+ + +++G G+PS + +
Sbjct: 287 IGIRSVFVEGGGKTLSLFLAAGRTDLLHLHIAPLLLGS-GLPSFQLSPVDRIQEGTYFHM 345
Query: 342 RRDYFGSDVCLE 353
Y ++ LE
Sbjct: 346 THFYLDKEILLE 357
>gi|261212850|ref|ZP_05927134.1| deoxycytidylate deaminase [Vibrio sp. RC341]
gi|260837915|gb|EEX64592.1| deoxycytidylate deaminase [Vibrio sp. RC341]
Length = 161
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSASTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + +
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKIIQTGIAAVHCPEQSD-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVHW 140
>gi|121714261|ref|XP_001274741.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
gi|119402895|gb|EAW13315.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1]
Length = 629
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ H+TL A S D+ I + ++G +K H LR++ DAIL+G+GT
Sbjct: 373 PRHDEKRHLPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTA 432
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +++DP + + + AP +I
Sbjct: 433 LADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVI 492
Query: 248 VTENDDPVLALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ K + +L L G+ S+++EGG V
Sbjct: 493 VSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVL 552
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSD 349
+N + +DS+I+ + +G GG+ SP + N V+ G +
Sbjct: 553 SELLNPEYAEFIDSMIVTVAPTYLGRGGVGVSPDSKRDEEGKPNAALNPRDVKWMPLGQN 612
Query: 350 VCL 352
V +
Sbjct: 613 VIM 615
>gi|262384379|ref|ZP_06077514.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
gi|262294082|gb|EEY82015.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B]
Length = 144
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V L+VKD ++I G G P
Sbjct: 10 ELDKRYLRMAAIWAENSYCKRR---QVGALLVKDKMIISDGY---NGTPAGFENVCEDEN 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + ++GAT YVT PC
Sbjct: 64 NVTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIEC 103
>gi|190348437|gb|EDK40888.2| hypothetical protein PGUG_04986 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 37/113 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D+ FM A + + V C++V+ VI G GGCP
Sbjct: 183 SWDSYFMRLADLAALRSNCMKR---RVGCVVVRGNRVIATGYNGTPRNLPNCNEGGCPRC 239
Query: 54 ----------------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYG 83
HAE AL EAG + Y PC
Sbjct: 240 NMGHGSGAELSTCLCLHAEENALLEAGRDRISRSHPDERGVLYCNTCPCLTCS 292
>gi|91202838|emb|CAJ72477.1| similar to dCMP deaminase [Candidatus Kuenenia stuttgartiensis]
Length = 158
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D F+ +R T V ++V + ++ G
Sbjct: 6 SWDEYFLRITKEVARRS---TCLRRQVGAVLVLEKHILATGYNGAPSGLQHCLEIGCLRE 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ AL +A G + GAT Y T PCS +
Sbjct: 63 QLRVPPGERHELCRGLHAEMNALIQAARYGIKISGATLYSTTCPCSLCAKM 113
>gi|258509262|ref|YP_003172013.1| CMP/dCMP deaminase [Lactobacillus rhamnosus GG]
gi|257149189|emb|CAR88162.1| CMP/dCMP deaminase, zinc-binding [Lactobacillus rhamnosus GG]
Length = 168
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ ++V D +IGRG T HAE+ A++ A + +VTLEPC
Sbjct: 27 PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPCP 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|239827788|ref|YP_002950412.1| ComE operon protein 2 [Geobacillus sp. WCH70]
gi|239808081|gb|ACS25146.1| ComE operon protein 2 [Geobacillus sp. WCH70]
Length = 151
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MERITWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGAHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC H
Sbjct: 58 CYVIDGHCVRTIHAEMNAIIQCAKFGVPTEGAEMYVTHFPCLHC 101
>gi|189485251|ref|YP_001956192.1| deoxycytidylate deaminase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287210|dbj|BAG13731.1| deoxycytidylate deaminase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 163
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
S+D FM A S T V +IV+D ++ G
Sbjct: 8 SRPSWDEYFMKLAWLVSERS---TCVRHHVGAVIVRDKRILTTGYNGAATDMQDCISLGC 64
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + G + +T Y T PC
Sbjct: 65 LRNTLNILSGQRHEICRAIHAEQNAIIQGGYHGINIKDSTLYCTHSPCVLC 115
>gi|116794256|gb|ABK27067.1| unknown [Picea sitchensis]
gi|116794306|gb|ABK27088.1| unknown [Picea sitchensis]
Length = 186
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F+S A+ + V ++V++ VI HAEV A+
Sbjct: 29 DRDLKFLSKAVEEAYSGV-NCGHGGPFGAIVVRNDEVIASCHNMVLKNMDPTAHAEVTAI 87
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
EA + + + EPC
Sbjct: 88 REACNKLGRIELSDCEIFASCEPCPMC 114
>gi|328906579|gb|EGG26354.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium sp. P08]
Length = 160
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M+ AL +R + + +++ DG V+ HAEV A+ A
Sbjct: 12 MTQALDVARRAA--AWGDVPIGAVVLGSDGDVLSEAGNERELTGDPTAHAEVLAIRRAAE 69
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 70 ARDGWRLGDCTLIVTLEPCTMC 91
>gi|312141603|ref|YP_004008939.1| cmp/dcmp deaminase [Rhodococcus equi 103S]
gi|311890942|emb|CBH50261.1| CMP/dCMP deaminase [Rhodococcus equi 103S]
Length = 156
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F+ + +R +V T A +IVKDG V+ HAE+ A+ +A
Sbjct: 3 FVQRTIDLARQNV--TEGGRPFAAVIVKDGEVLAESPNRVAQTGDPTAHAEILAISQACT 60
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G T YV PC
Sbjct: 61 ELGTEHLTGTTIYVLAHPCPMC 82
>gi|296195104|ref|XP_002745234.1| PREDICTED: deoxycytidylate deaminase-like [Callithrix jacchus]
Length = 178
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDLLPWRRTAEN 73
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 74 KLDTKYPYVCHAELNAIMNKNSTDVKGCTMYVALFPCNEC 113
>gi|199599026|ref|ZP_03212433.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
gi|199590062|gb|EDY98161.1| Cytosine/adenosine deaminase [Lactobacillus rhamnosus HN001]
Length = 170
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ ++V D +IGRG T HAE+ A++ A + +VTLEPC
Sbjct: 29 PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPCP 88
Query: 81 HY 82
Sbjct: 89 MC 90
>gi|307721944|ref|YP_003893084.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
DSM 16294]
gi|306980037|gb|ADN10072.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica
DSM 16294]
Length = 145
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 36/136 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D F++ A + ++ V +IVKDG ++ G G P
Sbjct: 3 DDKNFINIASEIASASKCVSK---QVGAVIVKDGRILSTGY---NGTPAGYTNCCDHWND 56
Query: 54 ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
HAE+ A+ G AT YVTLEPCS ++ +
Sbjct: 57 EYTKEHHEWSKTYEIHAEMNAIIWAARKGISIEDATIYVTLEPCSECSKNLIASGIKRIV 116
Query: 96 GIRRVVVCVDDPDVRV 111
+ D +
Sbjct: 117 YAKEYEHTHSDIVSKF 132
>gi|302329844|gb|ADL20038.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
1002]
Length = 151
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAYGGCP----HAEVQALEEA- 63
M A+ ++ T + V +I DG V+GRGV HAE+ A+ EA
Sbjct: 9 MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 64
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 65 ANHDDGWRLTDCTLAVTLEPCTMC 88
>gi|146414121|ref|XP_001483031.1| hypothetical protein PGUG_04986 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 37/113 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D+ FM A + + V C++V+ VI G GGCP
Sbjct: 183 SWDSYFMRLADLAALRSNCMKR---RVGCVVVRGNRVIATGYNGTPRNLPNCNEGGCPRC 239
Query: 54 ----------------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYG 83
HAE AL EAG + Y PC
Sbjct: 240 NMGHGSGAELSTCLCLHAEENALLEAGRDRISRSHPDERGVLYCNTCPCLTCS 292
>gi|188583970|ref|YP_001927415.1| bifunctional deaminase-reductase domain protein [Methylobacterium
populi BJ001]
gi|179347468|gb|ACB82880.1| bifunctional deaminase-reductase domain protein [Methylobacterium
populi BJ001]
Length = 238
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL------- 329
L + G+ LLVEGG + S + + LVD + L + V G G P+
Sbjct: 147 ALAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLLAPAVDGVIGTPALFDFEGGEA 206
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + + F V L Y +
Sbjct: 207 DSMGSRRRLTRTACEPFDDGTVWLRYRIE 235
>gi|240141090|ref|YP_002965570.1| putative deaminase reductase domain-containing protein
[Methylobacterium extorquens AM1]
gi|240011067|gb|ACS42293.1| putative deaminase reductase domain-containing protein
[Methylobacterium extorquens AM1]
Length = 238
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL------- 329
L + G+ LLVEGG + S + + LVD + L + V G G P+
Sbjct: 147 ALAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLIAPAVDGVLGTPALFDFEGGEG 206
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + F V L Y +
Sbjct: 207 DSMGSRRRLTRTACAPFDDGTVWLRYRIE 235
>gi|299115717|emb|CBN74282.1| tRNA specific adenosine deaminase [Ectocarpus siliculosus]
Length = 186
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 5 SFDAR---FMSAALRFSRWHV--GLTSTNPSVACLIVKDG--IVIGRGVTA----YGGCP 53
S D + +M AL+ + + G V C++V +I G +
Sbjct: 9 SSDEQNAVYMRLALKEAEMALSKGEV----PVGCVVVHKPTARIISCGHNETSEAFNATR 64
Query: 54 HAEVQALE---EAGEE---ARGATAYVTLEPCSHY 82
HAE+ A++ A + R +VT EPC
Sbjct: 65 HAELVAIDGILRAQTDLSLLRECDLFVTCEPCIMC 99
>gi|325678499|ref|ZP_08158114.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
gi|324109810|gb|EGC04011.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
Length = 248
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/244 (13%), Positives = 61/244 (25%), Gaps = 37/244 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP----- 53
M S+D F+ A + N V IV + ++ G GC
Sbjct: 5 MNYISWDDYFLGIAELSAARSK---DPNTQVGACIVSEENKILSLGYNGMPAGCNDDEMP 61
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
HAE+ A+ + + +G+ YV+L PC + I
Sbjct: 62 WGREGDFLDTKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPC-----NECAKAIIQSGIK 116
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ C D + G+ ++ + L ++ L
Sbjct: 117 EVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEHLVKILPNIKPKRWF------LIYK 170
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
M + + G + D + +G Q
Sbjct: 171 GEGSKMNITPYKSEAEAKEAMRNEYGMYCFYKEGFTCYGDCWIRELDAYVDSPDDGWQRR 230
Query: 218 SPMR 221
+
Sbjct: 231 WVII 234
>gi|188591891|ref|YP_001796489.1| guanine deaminase [Cupriavidus taiwanensis LMG 19424]
gi|170938265|emb|CAP63250.1| Guanine deaminase [Cupriavidus taiwanensis LMG 19424]
Length = 145
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 11 MSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64
M A+R + G ++V DG V+ G V ++ HAE++A+ A
Sbjct: 1 MREAVRLAVANRDRGAR----PFGAVLVLDGEVVATGVNDIVHSHDPTTHAEMEAVRAAA 56
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ RG+ Y + PC
Sbjct: 57 RKLGRPDLRGSVVYASGHPCPMC 79
>gi|27366964|ref|NP_762491.1| Deoxycytidylate deaminase [Vibrio vulnificus CMCP6]
gi|27358531|gb|AAO07481.1|AE016809_243 Deoxycytidylate deaminase [Vibrio vulnificus CMCP6]
Length = 152
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCEIWVTHFPCPNCAAKI-IQTGISRVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
+Q G+ V+
Sbjct: 118 SRWGDKIAVSQDMFNQAGVEVNW 140
>gi|296111710|ref|YP_003622092.1| dCMP deaminase [Leuconostoc kimchii IMSNU 11154]
gi|295833242|gb|ADG41123.1| dCMP deaminase [Leuconostoc kimchii IMSNU 11154]
Length = 160
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------- 53
S+D F++ A S T T V +IV++ +I G G P
Sbjct: 4 KRISWDQYFIAQAAILSTRS---TCTRLHVGAVIVQNNRIITSGYNGAVSGTPHCTDVGD 60
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GA YVT PC H
Sbjct: 61 LIVDGHCIRAVHAEQNALMQAAQMGISVDGAEVYVTDVPCIHC 103
>gi|189462145|ref|ZP_03010930.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
gi|189431118|gb|EDV00103.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136]
Length = 144
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A +S V LIVK+ ++I G G P
Sbjct: 11 LDKRYMQMATIWSENSYCNRRK---VGALIVKNKMIISDGY---NGTPAGFENVCEDEHG 64
Query: 54 -------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 ITKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIEC 103
>gi|108799186|ref|YP_639383.1| hypothetical protein Mmcs_2219 [Mycobacterium sp. MCS]
gi|119868301|ref|YP_938253.1| hypothetical protein Mkms_2265 [Mycobacterium sp. KMS]
gi|126434794|ref|YP_001070485.1| hypothetical protein Mjls_2208 [Mycobacterium sp. JLS]
gi|108769605|gb|ABG08327.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
MCS]
gi|119694390|gb|ABL91463.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
KMS]
gi|126234594|gb|ABN97994.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
JLS]
Length = 257
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ +L EGG V F + L+D + + + +++G G + R
Sbjct: 183 RGLLRVLTEGGPGVLGLFTAADLLDELCVTVAPVLVGGEAQRIVTGPGQVRTPLR--RSH 240
Query: 345 YFGSD---VCLEYIGKN 358
G D + Y+
Sbjct: 241 ILGDDDGYLYCRYVRDR 257
>gi|330944605|gb|EGH46556.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 224
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R +P+RII L +
Sbjct: 31 DDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRNPIRIIPTTSLDLPTSAS 88
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVE 293
I K+ + + D + R +++ + +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATSEQARDHEMVKNIRACGKEVLFAGAKHVDFTRLFPMLEARGINHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGHLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGVG 188
>gi|154416912|ref|XP_001581477.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915705|gb|EAY20491.1| hypothetical protein TVAG_238630 [Trichomonas vaginalis G3]
Length = 89
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEG 332
L + + S+ V+GG V S + + LVD + + G +P +
Sbjct: 2 LSKLKNTFHLKSIAVQGGGMVNWSLLRAGLVDELSYVIAPTTDGRSTDVSFIRRNPEDTD 61
Query: 333 YLEKNFMCVRRDYFGSD-VCLEYIGKN 358
F + G + V L Y K
Sbjct: 62 SPPLEFDLIDVQRVGDNGVWLRYAPKK 88
>gi|71737585|ref|YP_275900.1| riboflavin biosynthesis protein RibD domain-containing protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71558138|gb|AAZ37349.1| RibD C-terminal domain protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 217
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R + DAI+VG T++ DDP+LT R +P+RII L +
Sbjct: 31 DDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQLTNRYES--GRNPIRIIPTTSLDLPTSAS 88
Query: 236 IIKTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
I K+ + + + + V + K + D +L +L RG+ ++VE
Sbjct: 89 IFKSPEKTIIATTEQARDHEMVKHIRACGKEVLFAGAKHVDFTRLFPMLEVRGINHIMVE 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
GG + N LVD IIL + I+IG + +
Sbjct: 149 GGGHLNWQVFNLDLVDEIILMQVPIIIGGAATATLADGVG 188
>gi|119356771|ref|YP_911415.1| CMP/dCMP deaminase, zinc-binding [Chlorobium phaeobacteroides DSM
266]
gi|119354120|gb|ABL64991.1| CMP/dCMP deaminase, zinc-binding protein [Chlorobium
phaeobacteroides DSM 266]
Length = 173
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 34/106 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------T 47
FMS A SR + + +IV+D ++ G T
Sbjct: 29 EYFMSVAHLISRRATCTRAH---IGAVIVRDNNILSTGYNGAPSGLPHCDETNCRIYRST 85
Query: 48 AYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ A+ +A G + A Y+T PC H
Sbjct: 86 HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 131
>gi|317051269|ref|YP_004112385.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
S5]
gi|316946353|gb|ADU65829.1| CMP/dCMP deaminase zinc-binding protein [Desulfurispirillum indicum
S5]
Length = 154
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+D FM+ R L + +IV++ +I G
Sbjct: 9 WDQYFMNITAEVGRRSSCLRR---QIGAIIVREKRIIATGYNGAPPGVRSSMEIGSCLRD 65
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT Y T +PCS
Sbjct: 66 ERNIPSGTQHEICRGLHAEQNAILQAARFGTSVEGATLYCTHQPCSIC 113
>gi|240140677|ref|YP_002965157.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens
AM1]
gi|240010654|gb|ACS41880.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens
AM1]
Length = 147
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +V+DG V+ T HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAAVVRDGTVLAVAGNRPRTLCDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|51246206|ref|YP_066090.1| cytosine deaminase [Desulfotalea psychrophila LSv54]
gi|50877243|emb|CAG37083.1| probable cytosine deaminase [Desulfotalea psychrophila LSv54]
Length = 145
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALE 61
D F + A+ +R + + ++V DG ++GRG HAE+ LE
Sbjct: 1 MDKFF-AVAVAEARKGMATGGI--PIGSVLVIDGQIVGRGHNQRVQRGSVVLHAEMDCLE 57
Query: 62 EAGE----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
AG + R AT Y TL PC + C + +R
Sbjct: 58 NAGRIKAADYRRATLYSTLSPCDMCSGAVLLYGIPRVVIGENRTFCGPEDYMRSQ 112
>gi|256827679|ref|YP_003151638.1| tRNA-adenosine deaminase [Cryptobacterium curtum DSM 15641]
gi|256583822|gb|ACU94956.1| tRNA-adenosine deaminase [Cryptobacterium curtum DSM 15641]
Length = 206
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD------------GIVIGRGVTAY----G 50
D+ +M AL +R GL + ++V + VI R
Sbjct: 14 DSEYMQMALNEARHAQGLGEI--PIGAVVVYEPIDPATRRPLACPQVIARAGNRRETDAD 71
Query: 51 GCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE AL EA G T YVTLEPC
Sbjct: 72 PAGHAEFLALREAARRLGVWRLTGCTVYVTLEPCIMC 108
>gi|297293741|ref|XP_001092239.2| PREDICTED: deoxycytidylate deaminase isoform 4 [Macaca mulatta]
Length = 189
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 28 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDLLPWSRT 81
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 82 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 124
>gi|227502417|ref|ZP_03932466.1| nucleoside deaminase [Corynebacterium accolens ATCC 49725]
gi|306834972|ref|ZP_07468023.1| tRNA-specific adenosine deaminase [Corynebacterium accolens ATCC
49726]
gi|227076786|gb|EEI14749.1| nucleoside deaminase [Corynebacterium accolens ATCC 49725]
gi|304569138|gb|EFM44652.1| tRNA-specific adenosine deaminase [Corynebacterium accolens ATCC
49726]
Length = 147
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRW-HVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL +R G V ++ G + GV HAE++A+ +A
Sbjct: 1 MQRALAVARQTPAGDV----PVGAVLYDATGRELATGVNRREQLRDPTAHAEIEAIRQAV 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G G VTLEPC+
Sbjct: 57 RIHGDGWRLIGCELVVTLEPCAMC 80
>gi|150006872|ref|YP_001301615.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
gi|255016096|ref|ZP_05288222.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_7]
gi|256842138|ref|ZP_05547643.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
gi|298377298|ref|ZP_06987251.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_19]
gi|301308695|ref|ZP_07214647.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
20_3]
gi|149935296|gb|ABR41993.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503]
gi|256736454|gb|EEU49783.1| deoxycytidylate deaminase [Parabacteroides sp. D13]
gi|298265712|gb|EFI07372.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
3_1_19]
gi|300833219|gb|EFK63837.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
20_3]
Length = 144
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V L+VKD ++I G G P
Sbjct: 10 ELDKRYLRMAAIWAENSYCKRR---QVGALLVKDKMIISDGY---NGTPAGFENVCEDEN 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + ++GAT YVT PC
Sbjct: 64 NVTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIEC 103
>gi|195427655|ref|XP_002061892.1| GK17242 [Drosophila willistoni]
gi|194157977|gb|EDW72878.1| GK17242 [Drosophila willistoni]
Length = 203
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 34/105 (32%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM+ AL ++ V IV K ++ G G P
Sbjct: 49 WDDYFMAMALLSAKRSK---DPVTQVGACIVDKQNRIVAIGY---NGFPRNCSDDVFPWT 102
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G Y TL PC+
Sbjct: 103 KNSEDSMEDKKLYVVHAEANAILNSNSTSLVGTCLYTTLFPCNEC 147
>gi|157804219|ref|YP_001492768.1| cytosine deaminase [Rickettsia canadensis str. McKiel]
gi|157785482|gb|ABV73983.1| cytosine deaminase [Rickettsia canadensis str. McKiel]
Length = 200
Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPH 54
+SF+ FM AL+ +R N V +IV + +I H
Sbjct: 7 KETSFNNFFMQQALKQARIAF---DKNEVPVGAVIVDRLNQKIIASSYNNTEEKNNALYH 63
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ + EA + YVTLEPC+
Sbjct: 64 AEIITINEACNIISCKNLNDYDIYVTLEPCAMC 96
>gi|149202756|ref|ZP_01879728.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
TM1035]
gi|149144038|gb|EDM32072.1| bifunctional deaminase-reductase-like protein [Roseovarius sp.
TM1035]
Length = 272
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 10/235 (4%)
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
Q + E + +I S D + + ++G
Sbjct: 21 QACLCCGDWAPGERAAMALYGSMMAAPGTPQVVAQIGQSLDGRVATVTGDAADVSGPDGL 80
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
+H +RA DA++VG+ T L D+P LT RL +P R+++DP +L D+++
Sbjct: 81 AHLHRMRALVDAVIVGVKTALHDNPRLTVRLVS--GQNPARVVIDPSGRLPNDARLFAED 138
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
++I + + + + +++ L G+ L+VEGGA
Sbjct: 139 GTRRIVIQEVDKPRPAGVEVIQLPRSDWISPP----AIVSALRKVGLHHLMVEGGAITIA 194
Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS-PLEEGYLEKNFMCVRRDYFGSDVCL 352
FI + L+ + + + ++IG G G+ + P+ + + G+DV
Sbjct: 195 RFIEADLLARLHVAVAPLLIGAGPQGLTTRPVARLAQARRPE-TQVYGLGTDVLF 248
>gi|325001919|ref|ZP_08123031.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase ribd
[Pseudonocardia sp. P1]
Length = 130
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + AP+++ T + A ++ LL L RG+ +L EGG
Sbjct: 1 MFTDTVTAPIVLTTADAPAHRRAALSAAGADVAVLPDLAPATLLAELGRRGLHDVLCEGG 60
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
+ + + + VD + L +++G G + ++ + L
Sbjct: 61 PTLLGALVAADAVDELRLTLVPVLVGGPAGRIASGPVAGPARSLRPAGSRQADDGTLLLH 120
Query: 354 YIGK 357
YI +
Sbjct: 121 YIRE 124
>gi|172060929|ref|YP_001808581.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MC40-6]
gi|171993446|gb|ACB64365.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MC40-6]
Length = 159
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V VI RG G HAE+ AL A + + G YVTLEPC
Sbjct: 18 PVGAVLVCGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|171320346|ref|ZP_02909387.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MEX-5]
gi|171094424|gb|EDT39487.1| CMP/dCMP deaminase zinc-binding [Burkholderia ambifaria MEX-5]
Length = 159
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V VI RG G HAE+ AL A + + G YVTLEPC
Sbjct: 18 PVGAVLVCGDEVIARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|157736310|ref|YP_001488993.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
gi|315635442|ref|ZP_07890708.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
gi|157698164|gb|ABV66324.1| dCMP deaminase, putative [Arcobacter butzleri RM4018]
gi|315480200|gb|EFU70867.1| CMP/dCMP deaminase [Arcobacter butzleri JV22]
Length = 147
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 36/109 (33%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D F++ A + ++ V +IVKDG ++ G G P
Sbjct: 4 DRSFINIAKEIALASKCVSK---QVGAVIVKDGRILSTGY---NGTPAGYINCSEHWKGE 57
Query: 54 --------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ G G T YVTLEPCS ++
Sbjct: 58 YTKDHHEWSKTYEIHAEMNAIIWAARKGISIEGGTIYVTLEPCSECSKN 106
>gi|70990810|ref|XP_750254.1| cytosine deaminase [Aspergillus fumigatus Af293]
gi|119496775|ref|XP_001265161.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
gi|66847886|gb|EAL88216.1| cytosine deaminase, putative [Aspergillus fumigatus Af293]
gi|119413323|gb|EAW23264.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181]
gi|159130729|gb|EDP55842.1| cytosine deaminase, putative [Aspergillus fumigatus A1163]
Length = 148
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
DA F++ AL ++ + +V KDG ++GRG HAE+ A
Sbjct: 2 ETDAGFIA-ALEEAKKGAAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSA 58
Query: 60 LEEAGEEA----RGATAYVTLEPCSHYGRSP 86
LE +G GAT Y TL PC +
Sbjct: 59 LENSGRLPASAYEGATMYTTLSPCDMCTGAC 89
>gi|300857552|ref|YP_003782535.1| hypothetical protein cpfrc_00135 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685006|gb|ADK27928.1| hypothetical protein cpfrc_00135 [Corynebacterium
pseudotuberculosis FRC41]
gi|308275531|gb|ADO25430.1| Cytosine/adenosine deaminase [Corynebacterium pseudotuberculosis
I19]
Length = 167
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA- 63
M A+ ++ T + V +I DG V+GRGV HAE+ A+ EA
Sbjct: 25 MRQAIIQAQ----ATPPGDIPVGAVIFGPDGEVLGRGVNRREADRDPLGHAEIMAIREAV 80
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 81 ANHDDGWRLTDCTLAVTLEPCTMC 104
>gi|299747155|ref|XP_002911134.1| tRNA specific adenosine deaminase [Coprinopsis cinerea
okayama7#130]
gi|298407392|gb|EFI27640.1| tRNA specific adenosine deaminase [Coprinopsis cinerea
okayama7#130]
Length = 188
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
++M A+ + + G V C+ V+D +I + HAE++
Sbjct: 9 DRHLKWMKEAMNMAEEALAAGEV----PVGCVFVRDEKIIAKARNRTNELRNATRHAELE 64
Query: 59 ALE----------EAGE--EARGATAYVTLEPCSHY 82
A++ + GE T YVT+EPC
Sbjct: 65 AIDCILSDNELTPQKGEPYPLSTTTLYVTVEPCIMC 100
>gi|224476697|ref|YP_002634303.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300]
gi|222421304|emb|CAL28118.1| putative deaminase similar to ComEB [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 153
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++ FM+ + S T T SV IVKD +I G + G
Sbjct: 1 MDRIKWEEYFMAQSHLLSLRS---TCTRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 CLMEDNHCIRTIHAEMNALLQCTKQGVSTEGATIYVTHFPCLNC 101
>gi|268611051|ref|ZP_06144778.1| dCMP deaminase [Ruminococcus flavefaciens FD-1]
Length = 160
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 37/113 (32%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP--- 53
M + +D FM A+ ++ ++ V IV D ++ G G P
Sbjct: 1 MKRTDYISWDEYFMGIAMLSAQRSKDNST---QVGACIVNDEHKIVSVGY---NGMPTGC 54
Query: 54 -----------------------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
HAE+ A+ + G T YVTL PC+
Sbjct: 55 DDDEMPWERSAENELDTKYPFVCHAELNAILNSNIGNLSGCTVYVTLFPCNEC 107
>gi|126459735|ref|YP_001056013.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
calidifontis JCM 11548]
gi|126249456|gb|ABO08547.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Pyrobaculum calidifontis JCM 11548]
Length = 217
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 12/218 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L A + D I A S ++ I ++H LRA+ DA++VG T + D+P L
Sbjct: 1 MRPYVYLAAATTLDGRIASATGYSR-LSCPIDLRRLHELRARVDAVIVGANTAIVDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNIN 266
T R + R+++D K+ ++ + V + ++ L R +
Sbjct: 60 TVRYVEGRNPM--RVLIDGALKVPTSLRMFDNSAPTLVFTTAKAPAEKIVELRARGVEVY 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
+ + D +L+ L RGV +L+EGG F++ LVD ++L + + G
Sbjct: 118 VADGEKVDPAWVLSTLYQRGVRKVLLEGGGRTNWEFLHRCLVDEVVLTITPYIFGRGVSL 177
Query: 322 --EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
G P+ E+ V+ G +V L Y +
Sbjct: 178 VEGEGYPT-KEDMPYSLVLQSVKTCECGQEVVLTYRVQ 214
>gi|121534898|ref|ZP_01666717.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
gi|121306497|gb|EAX47420.1| CMP/dCMP deaminase, zinc-binding [Thermosinus carboxydivorans Nor1]
Length = 147
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++D FM + T V +IVKD ++ G
Sbjct: 1 MSRPTWDEYFMDITRVVALRS---TCLRRQVGAVIVKDKRLLTSGYNGAPRGLAHCEDVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T +PCS +
Sbjct: 58 CLRDTYHVPSGERHELCRGMHAEQNAIVQAALYGVAIEGATLYCTHQPCSACTKM 112
>gi|91791447|ref|YP_561098.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
gi|91713449|gb|ABE53375.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217]
Length = 147
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 41/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAKRFFQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGISDSAETD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + +
Sbjct: 57 DRDMKLLKTLHAEENAILFAKRDLDGCDIWVTHFPCPNCAAKIIQTGITGVFCPEQ-NAD 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
+ Q G+ V
Sbjct: 116 FLSRWGDKISISQEMFLQAGVKVTW 140
>gi|297625715|ref|YP_003687478.1| deoxycytidylate deaminase (dCMP deaminase) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921480|emb|CBL56034.1| Deoxycytidylate deaminase (dCMP deaminase) [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 154
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 40/133 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT------------- 47
V S+D F+ + V ++V D +I G
Sbjct: 11 TVPSWDEYFLGITQAVAARAKCTRR---RVGAVLVGPDHRIIATGYNGAAPGRPDCLEGA 67
Query: 48 -----------------AYGGCP------HAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
G P HAE+ AL A + +GATA++T EPC +
Sbjct: 68 CPRGRLSYDEIPGLGDYDRPGTPGFCIAIHAEMNALLFATRDTKGATAFITDEPCPGCRK 127
Query: 85 SPPCAQFIIECGI 97
+ A +
Sbjct: 128 ALAAAGIVRAVWP 140
>gi|261187467|ref|XP_002620157.1| deoxycytidylate deaminase [Ajellomyces dermatitidis SLH14081]
gi|239594207|gb|EEQ76788.1| deoxycytidylate deaminase [Ajellomyces dermatitidis SLH14081]
gi|327356490|gb|EGE85347.1| deoxycytidylate deaminase [Ajellomyces dermatitidis ATCC 18188]
Length = 356
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C++V+ V+ G GGCP
Sbjct: 186 WDQYFMQLASLAAQRSNCMKR---RVGCVLVRGKRVMSTGYNGTPRNTKNCNEGGCPRCN 242
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 243 SGEGGGAALSTCLCIHAEENALLEAGRERIGEGAILYCNTCPCLTCS 289
>gi|229492640|ref|ZP_04386443.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis
SK121]
gi|229320626|gb|EEN86444.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis
SK121]
Length = 153
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
M + + D R + AA+ +R + + V ++ DG+ + R A HA
Sbjct: 1 MTL-ADDQRMIRAAIVAARSA---SDADVPVGAVVFDADGVEVARASNAREASSDPTAHA 56
Query: 56 EVQALEEA------GEEARGATAYVTLEPCSHY 82
E+ AL A G GAT VTLEPC+
Sbjct: 57 EILALRAAAKTYGDGWRLEGATLAVTLEPCTMC 89
>gi|127513983|ref|YP_001095180.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
gi|126639278|gb|ABO24921.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4]
Length = 149
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF+ A + W + V +I ++ ++ G Y G
Sbjct: 2 MSKWAIRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILYAKRDLSSCEIWVTHFPCPNCAAKI-IQTGLKVVHSPQPSDDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWGDKIKVSQDMFDQAGVEVDWMQ 142
>gi|256847006|ref|ZP_05552452.1| ComE operon protein 2 [Lactobacillus coleohominis 101-4-CHN]
gi|256715670|gb|EEU30645.1| ComE operon protein 2 [Lactobacillus coleohominis 101-4-CHN]
Length = 162
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A + SV ++V+D +IG G
Sbjct: 3 KRIDWDQYFMVQAGLVASRGTCRRL---SVGAILVRDKRIIGSGYNGAVAGDDHCIDVGC 59
Query: 49 --YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ AL + G GA YVT PC
Sbjct: 60 YMRDGHCVRTIHAEMNALLQCAKFGTPTDGAVLYVTDFPCLQC 102
>gi|89097158|ref|ZP_01170048.1| Enzyme; dihydrofolate reductase family protein [Bacillus sp. NRRL
B-14911]
gi|89087981|gb|EAR67092.1| Enzyme; dihydrofolate reductase family protein [Bacillus sp. NRRL
B-14911]
Length = 178
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
D V + + + ++ + + + ++ G + V G
Sbjct: 58 YDWIMKHEKGQFPYKNKDCYVFSRSQLEDTADVKFVNEDIVDFANSLKKEEGKN-IWVVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G + H+F+ L+D + + + +IG GIP Y E + F V + Y
Sbjct: 117 GGELLHTFLKEELLDELFITIAPAIIG-DGIPLFKSGNY-ELDLKLKGTRTFNQFVEIHY 174
Query: 355 IGKN 358
K
Sbjct: 175 TVKK 178
>gi|294672973|ref|YP_003573589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing
protein [Prevotella ruminicola 23]
gi|294474140|gb|ADE83529.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Prevotella ruminicola 23]
Length = 145
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S D R++ A ++ V L+VKD ++I G G P
Sbjct: 7 KQSKLDVRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCE 60
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + GAT Y+T PC
Sbjct: 61 DDDNVTKPYVLHAEANAITKLARSNNNSDGATIYITASPCIEC 103
>gi|239609238|gb|EEQ86225.1| deoxycytidylate deaminase [Ajellomyces dermatitidis ER-3]
Length = 356
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 35/107 (32%), Gaps = 32/107 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53
+D FM A ++ + V C++V+ V+ G GGCP
Sbjct: 186 WDQYFMQLASLAAQRSNCMKR---RVGCVLVRGKRVMSTGYNGTPRNTKNCNEGGCPRCN 242
Query: 54 ---------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GA Y PC
Sbjct: 243 SGEGGGAALSTCLCIHAEENALLEAGRERIGEGAILYCNTCPCLTCS 289
>gi|55623552|ref|XP_517546.1| PREDICTED: deoxycytidylate deaminase isoform 4 [Pan troglodytes]
Length = 189
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 28 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 81
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 82 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 124
>gi|304406859|ref|ZP_07388514.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304344392|gb|EFM10231.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 219
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 10/187 (5%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+H R I+VG T+ D+P LT R + P+RI+ + LDS
Sbjct: 31 SNQDIEFIHQFRGHVQGIMVGKNTIHNDNPFLTNRYEENKN--PIRIVPTATMDIDLDSN 88
Query: 236 IIKTALLAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
I+ ++ ++D A K I + + + G+T L+V
Sbjct: 89 ILSDDGRTIIVTTELGKDDDKIEQIRARGKDCIVCGHDKVDFAELFRRLESEFGITDLMV 148
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFG 347
EGG + + L D IIL + I+IG + + K + V +
Sbjct: 149 EGGGFLNWHVFDQDLADEIILMQLPIIIGGADNITLADGEGYRDLAFAKKYKIVEVEPRE 208
Query: 348 SDVCLEY 354
+ + Y
Sbjct: 209 NYTLMRY 215
>gi|301753666|ref|XP_002912694.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Ailuropoda
melanoleuca]
Length = 192
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A++ ++ + V CL+V + V+G+G HAE+ A+++A
Sbjct: 24 KKWMEEAMQMAKEALENIEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 81
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 82 LDWCHRSGKSPSEVFEHTVLYVTVEPCIMC 111
>gi|228469636|ref|ZP_04054616.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
uenonis 60-3]
gi|228308829|gb|EEK17530.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
uenonis 60-3]
Length = 162
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ V LIV + ++I G G P
Sbjct: 15 KQTILDRRYLRMARIWAENSYCQRR---QVGALIVHNQMIISDGY---NGTPSGFENVCE 68
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + G GAT Y+T PC
Sbjct: 69 DDEGITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLEC 111
>gi|295442884|ref|NP_596505.2| tRNA specific adenosine deaminase subunit Tad2 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|259016150|sp|O94642|TAD2_SCHPO RecName: Full=tRNA-specific adenosine deaminase subunit tad2;
AltName: Full=tRNA-specific adenosine-34 deaminase
subunit tad2
gi|254745608|emb|CAB38514.2| tRNA specific adenosine deaminase subunit Tad2 (predicted)
[Schizosaccharomyces pombe]
Length = 389
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 18/174 (10%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLT-STNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
+ +M A +C+ V G VIGRG G HAE
Sbjct: 209 KYDTQHETYMKLAHEILNLGPYFVIQPRSPGSCVFVYKGEVIGRGFNETNCSLSGIRHAE 268
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ A+E+ E + T YVT+EPC CA + + I+ V + R
Sbjct: 269 LIAIEKILEHYPASVFKETTLYVTVEPCL------MCAAALKQLHIKAVYFGCGND--RF 320
Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
G G + K +D +F + E +K V Q
Sbjct: 321 GGCGSVFSINKDQSIDPSYPVYPGLFYSEAVMLMREFYVQENVKAPVPQSKKQR 374
>gi|330825753|ref|YP_004389056.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans K601]
gi|329311125|gb|AEB85540.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans K601]
Length = 163
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
S+ D + A+ + + +I +DG + GV HAE+QA
Sbjct: 8 STSDIALLRRAVDLAHANRMQGGR--PFGAVIARDGRQLATGVNETHQTCDPSAHAEMQA 65
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L EA G + Y + PC
Sbjct: 66 LREATRARRDASLAGCSVYASGHPCPMC 93
>gi|319901309|ref|YP_004161037.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
gi|319416340|gb|ADV43451.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P
36-108]
Length = 145
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCKRR---QVGALIVKDKMIISDGY---NGTPAGFENICEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIECS 105
>gi|319762326|ref|YP_004126263.1| cmp/dcmp deaminase zinc-binding protein [Alicycliphilus
denitrificans BC]
gi|317116887|gb|ADU99375.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans BC]
Length = 163
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
S+ D + A+ + + +I +DG + GV HAE+QA
Sbjct: 8 STSDIALLRRAVDLAHANRMQGGR--PFGAVIARDGRQLATGVNETHQTCDPSAHAEMQA 65
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L EA G + Y + PC
Sbjct: 66 LREATRARRDASLAGCSVYASGHPCPMC 93
>gi|291385964|ref|XP_002709531.1| PREDICTED: dCMP deaminase [Oryctolagus cuniculus]
Length = 178
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNAENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 113
>gi|254563191|ref|YP_003070286.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens
DM4]
gi|254270469|emb|CAX26469.1| tRNA-specific adenosine deaminase [Methylobacterium extorquens
DM4]
Length = 147
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +V+DG V+ T HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAAVVRDGTVLAVAGNRPRTLCDPTAHAEILAIRAACAALRDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|229495862|ref|ZP_04389588.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
endodontalis ATCC 35406]
gi|229317175|gb|EEN83082.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
endodontalis ATCC 35406]
Length = 146
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A +S V LIVKD ++I G G P
Sbjct: 10 LDKRYLRMARIWSENSYCTRRK---VGALIVKDQMIISDGY---NGTPSGFENVCEDESG 63
Query: 54 -------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + G + GAT Y+T PC
Sbjct: 64 LTKPYVLHAEANAITKVACSGNNSDGATIYITASPCVEC 102
>gi|295428166|ref|ZP_06820798.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590868|ref|ZP_06949506.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MN8]
gi|295128524|gb|EFG58158.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575754|gb|EFH94470.1| competence protein ComEB [Staphylococcus aureus subsp. aureus MN8]
gi|312437943|gb|ADQ77014.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus
TCH60]
Length = 156
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
++ FM+ + + T SV IVKD +I G + G
Sbjct: 8 KWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIE 64
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 65 DGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 104
>gi|152976756|ref|YP_001376273.1| ComE operon protein 2 [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152025508|gb|ABS23278.1| ComE operon protein 2 [Bacillus cytotoxicus NVH 391-98]
Length = 185
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + GA YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEGAEIYVTHFPCLQC 101
>gi|332244691|ref|XP_003271507.1| PREDICTED: deoxycytidylate deaminase-like isoform 2 [Nomascus
leucogenys]
gi|332244693|ref|XP_003271508.1| PREDICTED: deoxycytidylate deaminase-like isoform 3 [Nomascus
leucogenys]
gi|332244695|ref|XP_003271509.1| PREDICTED: deoxycytidylate deaminase-like isoform 4 [Nomascus
leucogenys]
Length = 178
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 113
>gi|302914924|ref|XP_003051273.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732211|gb|EEU45560.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 431
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 37/140 (26%), Gaps = 39/140 (27%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM A ++ + V C++V K+ VI G G P
Sbjct: 230 WDTYFMELASLAAQRSNCMKR---RVGCVLVGKERRVISTGY---NGTPRGLLNCAEGGC 283
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFI 92
HAE AL EAG E G+ Y PC
Sbjct: 284 PRCNDASSSGVGLSTCLCIHAEENALLEAGRERIREGSVLYCDTCPCLTCSIKICQVGIS 343
Query: 93 IECGIRRVVVCVDDPDVRVS 112
+ + V
Sbjct: 344 EVVYAHGYSMDNETARVFRE 363
>gi|268317845|ref|YP_003291564.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
4252]
gi|262335379|gb|ACY49176.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM
4252]
Length = 155
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 19/88 (21%)
Query: 8 ARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
F+ +R + R G A L+V+DG V+ G T HAE+ A
Sbjct: 4 EAFIREVIRLAEANVRRGGG------PFAALVVRDGEVLAAGTNRVTTDNDPTAHAEIVA 57
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ EA G Y + EPC
Sbjct: 58 IREACRRLGHFQLTGCDLYTSCEPCPMC 85
>gi|254498334|ref|ZP_05111073.1| cytidine and deoxycytidylate deaminase family protein [Legionella
drancourtii LLAP12]
gi|254352442|gb|EET11238.1| cytidine and deoxycytidylate deaminase family protein [Legionella
drancourtii LLAP12]
Length = 175
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT--AYGGCPHAEVQALEE 62
D +M A+ ++ ++ A LIV + G ++ +G+ H E+ A+
Sbjct: 33 DEYYMQIAIDLAK-----SNPKAPFAALIVDNKTGEILSKGINASKVNPTFHGEMVAINN 87
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
+ T Y T EPCS
Sbjct: 88 CVKEHPKVDWSQVTLYTTAEPCSMC 112
>gi|39970877|ref|XP_366829.1| hypothetical protein MGG_02905 [Magnaporthe oryzae 70-15]
gi|149210385|ref|XP_001522567.1| hypothetical protein MGCH7_ch7g670 [Magnaporthe oryzae 70-15]
gi|86196625|gb|EAQ71263.1| hypothetical protein MGCH7_ch7g670 [Magnaporthe oryzae 70-15]
gi|145017270|gb|EDK01633.1| hypothetical protein MGG_02905 [Magnaporthe oryzae 70-15]
Length = 593
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
+ F+ AL +R + T+ P V C++V G VI RG+ A G HAE AL
Sbjct: 207 AIHQGFIEEALDMARLAL-KTNETP-VGCVLVYRGRVIARGMNATNITRNGTRHAEYMAL 264
>gi|161509817|ref|YP_001575476.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253732242|ref|ZP_04866407.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733160|ref|ZP_04867325.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
TCH130]
gi|294848619|ref|ZP_06789365.1| ComE operon protein 2 [Staphylococcus aureus A9754]
gi|295406712|ref|ZP_06816517.1| ComE operon protein 2 [Staphylococcus aureus A8819]
gi|297207692|ref|ZP_06924127.1| competence protein ComEB [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245706|ref|ZP_06929571.1| ComE operon protein 2 [Staphylococcus aureus A8796]
gi|300911773|ref|ZP_07129216.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
TCH70]
gi|304380821|ref|ZP_07363481.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|160368626|gb|ABX29597.1| possible competence protein ComEB [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724031|gb|EES92760.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728916|gb|EES97645.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
TCH130]
gi|294824645|gb|EFG41068.1| ComE operon protein 2 [Staphylococcus aureus A9754]
gi|294968459|gb|EFG44483.1| ComE operon protein 2 [Staphylococcus aureus A8819]
gi|296887709|gb|EFH26607.1| competence protein ComEB [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177357|gb|EFH36609.1| ComE operon protein 2 [Staphylococcus aureus A8796]
gi|300886019|gb|EFK81221.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
TCH70]
gi|304340548|gb|EFM06482.1| ComE operon protein ComEB [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|320140525|gb|EFW32379.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144063|gb|EFW35832.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus MRSA177]
Length = 156
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
++ FM+ + + T SV IVKD +I G + G
Sbjct: 8 KWEEYFMAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIE 64
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 65 DGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 104
>gi|62858897|ref|NP_001016265.1| dCMP deaminase [Xenopus (Silurana) tropicalis]
gi|89266721|emb|CAJ83844.1| deoxycytidylate deaminase [Xenopus (Silurana) tropicalis]
Length = 190
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ N V IV + ++G G GC
Sbjct: 28 EYFMAVAFLAAQRSK---DPNSQVGACIVNSENKIVGIGYNGMPNGCHDDVLPWARTAED 84
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 85 RLDTKYPYVCHAELNAIMNKNTADVKGCTMYVALFPCNEC 124
>gi|330893756|gb|EGH26417.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori
str. 301020]
Length = 61
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
RGV +LVE G +A +F LVD ++ + +G P
Sbjct: 7 RGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 48
>gi|320102361|ref|YP_004177952.1| tRNA-adenosine deaminase [Isosphaera pallida ATCC 43644]
gi|319749643|gb|ADV61403.1| tRNA-adenosine deaminase [Isosphaera pallida ATCC 43644]
Length = 185
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAE 56
+ D M+ AL +R +G V +++ G ++ + HAE
Sbjct: 17 TPTDYWAMTRALDLARAAVDLGEV----PVGAVVLDPLGRLLAQAHNLRETLEDPTAHAE 72
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
L A G T YVTLEPC
Sbjct: 73 RLVLTWAARGLGTWRLEGCTLYVTLEPCVMC 103
>gi|314924011|gb|EFS87842.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL001PA1]
Length = 152
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 39/133 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 10 TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66
Query: 54 ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ AL A + G+TAYVT +PC ++
Sbjct: 67 PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCYGCRKA 126
Query: 86 PPCAQFIIECGIR 98
A +
Sbjct: 127 LAAAGVVRAVWPD 139
>gi|297674743|ref|XP_002815371.1| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Pongo abelii]
gi|297674745|ref|XP_002815372.1| PREDICTED: deoxycytidylate deaminase-like isoform 2 [Pongo abelii]
gi|297674747|ref|XP_002815373.1| PREDICTED: deoxycytidylate deaminase-like isoform 3 [Pongo abelii]
gi|62286511|sp|Q5RC69|DCTD_PONAB RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|55727775|emb|CAH90638.1| hypothetical protein [Pongo abelii]
Length = 178
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDQLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 113
>gi|61742819|ref|NP_001912.2| deoxycytidylate deaminase isoform b [Homo sapiens]
gi|114597027|ref|XP_001160760.1| PREDICTED: similar to DCMP deaminase isoform 3 [Pan troglodytes]
gi|114597029|ref|XP_001160671.1| PREDICTED: deoxycytidylate deaminase isoform 2 [Pan troglodytes]
gi|114597031|ref|XP_001160617.1| PREDICTED: similar to DCMP deaminase isoform 1 [Pan troglodytes]
gi|23503055|sp|P32321|DCTD_HUMAN RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|886280|gb|AAC37579.1| deoxycytidylate deaminase [Homo sapiens]
gi|119625105|gb|EAX04700.1| dCMP deaminase, isoform CRA_c [Homo sapiens]
gi|119625106|gb|EAX04701.1| dCMP deaminase, isoform CRA_c [Homo sapiens]
gi|189053781|dbj|BAG36033.1| unnamed protein product [Homo sapiens]
Length = 178
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 113
>gi|259650544|dbj|BAI42706.1| putative cytosine/adenosine deaminase [Lactobacillus rhamnosus
GG]
Length = 170
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ ++V D +IGRG T HAE+ A++ A + +VTLEPC
Sbjct: 29 PIGAVVVHDQQIIGRGYNLRETTQDATQHAEILAIQAACRQLGTWRLEDCSLFVTLEPCP 88
Query: 81 HY 82
Sbjct: 89 MC 90
>gi|126653876|ref|ZP_01725723.1| late competence protein ComEB [Bacillus sp. B14905]
gi|126589601|gb|EAZ83740.1| late competence protein ComEB [Bacillus sp. B14905]
Length = 189
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++D FM+ + + T T +V +V+D +I G
Sbjct: 1 MERITWDQFFMAQSHLLALRS---TCTRLAVGATVVRDKRIIAGGYNGSITGDEHCIEKG 57
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPC 79
HAE+ AL + G +GA YVT PC
Sbjct: 58 CYVVDNHCVRTVHAEMNALLQCAKYGTPTKGADLYVTHFPC 98
>gi|27379891|ref|NP_771420.1| cytosine deaminase [Bradyrhizobium japonicum USDA 110]
gi|27353044|dbj|BAC50045.1| bll4780 [Bradyrhizobium japonicum USDA 110]
Length = 150
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56
M + S+ FM A+R + + + ++ +D +I RG H E
Sbjct: 1 MAIESYHFDFMLEAIREAEASIAQGGL--PIGAVLTRDNQIIARGHNNRVQENNVILHGE 58
Query: 57 VQALEEAGEE-ARGATAYVTLEPCSHY 82
+ L EAG Y TL PCS
Sbjct: 59 MSCLREAGAITFHDTIMYTTLSPCSMC 85
>gi|294622902|ref|ZP_06701815.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium U0317]
gi|291597674|gb|EFF28827.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium U0317]
Length = 173
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLLEHQMIDEWYIQITPVLLG-DGIPLF-QKGTYEARFEMLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|293567272|ref|ZP_06678626.1| dihydrofolate reductase family protein [Enterococcus faecium E1071]
gi|294615588|ref|ZP_06695444.1| dihydrofolate reductase family protein [Enterococcus faecium E1636]
gi|291590021|gb|EFF21815.1| dihydrofolate reductase family protein [Enterococcus faecium E1071]
gi|291591531|gb|EFF23184.1| dihydrofolate reductase family protein [Enterococcus faecium E1636]
Length = 190
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 123 KDIWVVGGGRLIKPLLEHQMIDEWYIQITPVLLG-DGIPLF-QKGTYEARFEMLDTTRFG 180
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 181 EFIELHYVRK 190
>gi|257878618|ref|ZP_05658271.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883122|ref|ZP_05662775.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257891869|ref|ZP_05671522.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894439|ref|ZP_05674092.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|258616857|ref|ZP_05714627.1| YwjB [Enterococcus faecium DO]
gi|260559331|ref|ZP_05831513.1| predicted protein [Enterococcus faecium C68]
gi|261208007|ref|ZP_05922685.1| predicted protein [Enterococcus faecium TC 6]
gi|289566897|ref|ZP_06447304.1| riboflavin biosynthesis protein RibD domain-containing protein
[Enterococcus faecium D344SRF]
gi|293563839|ref|ZP_06678272.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E1162]
gi|294619812|ref|ZP_06699202.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium E1679]
gi|314938078|ref|ZP_07845386.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133a04]
gi|314943600|ref|ZP_07850357.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133C]
gi|314949237|ref|ZP_07852586.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0082]
gi|314952613|ref|ZP_07855605.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133A]
gi|314992461|ref|ZP_07857883.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133B]
gi|314997376|ref|ZP_07862332.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133a01]
gi|257812846|gb|EEV41604.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818780|gb|EEV46108.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257828229|gb|EEV54855.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830818|gb|EEV57425.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260074691|gb|EEW63011.1| predicted protein [Enterococcus faecium C68]
gi|260077765|gb|EEW65478.1| predicted protein [Enterococcus faecium TC 6]
gi|289161303|gb|EFD09196.1| riboflavin biosynthesis protein RibD domain-containing protein
[Enterococcus faecium D344SRF]
gi|291593945|gb|EFF25429.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium E1679]
gi|291604209|gb|EFF33710.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E1162]
gi|313588563|gb|EFR67408.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133a01]
gi|313593003|gb|EFR71848.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133B]
gi|313595281|gb|EFR74126.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133A]
gi|313597718|gb|EFR76563.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133C]
gi|313642567|gb|EFS07147.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0133a04]
gi|313644378|gb|EFS08958.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecium
TX0082]
Length = 173
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLLEHQMIDEWYIQITPVLLG-DGIPLF-QKGTYEARFEMLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|332829184|gb|EGK01848.1| hypothetical protein HMPREF9455_01996 [Dysgonomonas gadei ATCC
BAA-286]
Length = 147
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A ++ + V LIVKD ++I G G P
Sbjct: 9 LDERYMRMAAIWAENSYCVRRK---VGALIVKDKMIISDGY---NGTPAGFENICEDENN 62
Query: 54 -------HAEVQALEEAG---EEARGATAYVTLEPCSHY 82
HAE A+ + + GAT YVT PC
Sbjct: 63 ETKPYVLHAEANAITKVACSHNSSMGATMYVTTSPCIEC 101
>gi|323464316|gb|ADX76469.1| ComE operon protein 2, putative [Staphylococcus pseudintermedius
ED99]
Length = 153
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M + FM+ + + T T SV I KD +I G
Sbjct: 1 MKRIQWHEYFMAQSHLLALRS---TCTRLSVGATITKDNRIIAGGYNGSVSGEVHCIDEG 57
Query: 49 ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ A+ + G AT YVT PC +
Sbjct: 58 CLMEDGHCIRTIHAEMNAILQCSKQGVSTENATIYVTHFPCLNC 101
>gi|298252974|ref|ZP_06976766.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis
5-1]
gi|297532369|gb|EFH71255.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis
5-1]
Length = 153
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCP 53
M + M+ AL +R G V +++ G +IG+G
Sbjct: 1 MNMRDEIVFAMNQALNLARESASAGEV----PVGAVVLDGGGNIIGKGANMREQSADPLA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAEV A+++A T VTLEPC
Sbjct: 57 HAEVLAMKDAAASRKSWNLSDCTLVVTLEPCPMC 90
>gi|328785680|ref|XP_392413.3| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Apis
mellifera]
Length = 189
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++ FM+ A ++ V IV D ++G G G P
Sbjct: 27 DWEDYFMAIAFLSAKRSK---DPRTQVGACIVNEDKQIVGIGY---NGMPKGCSDDEFSW 80
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAEV A+ + + T YV L PC+
Sbjct: 81 CKNSNDSLKNKSLYVCHAEVNAILNKNCSSVKNCTIYVALFPCNEC 126
>gi|324503290|gb|ADY41431.1| Deoxycytidylate deaminase [Ascaris suum]
Length = 284
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCP---------- 53
S++ FM+ A ++ V +IV +IG G G P
Sbjct: 110 SWEEYFMAVACLAAQRSK---DPVTQVGAVIVNPDLKIIGSGY---NGMPNGCSDDVMPW 163
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ E +G+T Y L PC+
Sbjct: 164 GKDSDNPLETKYPFVCHAEMNAILNRNCESVKGSTIYTVLFPCNEC 209
>gi|293556480|ref|ZP_06675054.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E1039]
gi|291601359|gb|EFF31637.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecium E1039]
Length = 173
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG + + +++D + + +++G GIP ++G E F + FG
Sbjct: 106 KDIWVVGGGRLIKPLLEHQMIDEWYIQITPVLLG-DGIPLF-QKGIYEARFEMLDTTRFG 163
Query: 348 SDVCLEYIGK 357
+ L Y+ K
Sbjct: 164 EFIELHYVRK 173
>gi|302552546|ref|ZP_07304888.1| deaminase [Streptomyces viridochromogenes DSM 40736]
gi|302470164|gb|EFL33257.1| deaminase [Streptomyces viridochromogenes DSM 40736]
Length = 143
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGRGVTAY----GGCPHAEVQALEEAG 64
M AL + V + V +++ DG V+ G HAE+ AL A
Sbjct: 1 MRLALDEAAGAV--RGGDVPVGAVVLAPDGTTVLASGHNEREAGGDPTAHAELLALRRAA 58
Query: 65 E-----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 AELGTWRLAGCTLVVTLEPCTMC 81
>gi|145607321|ref|XP_361694.2| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
gi|145014902|gb|EDJ99470.1| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15]
Length = 289
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSRLVDSIILYRSQIVIGEGG-IPSPL 329
+L L G+ S++VEGG V ++ + + LVDS+I+ + +G+GG + SP
Sbjct: 195 WNDILAALQHEGLNSVMVEGGGHVINTLLGHKDKNDLVDSVIITIAPTWLGQGGVVVSPA 254
Query: 330 ------EEGYLEKNFMCVRRDYFGSDVCL 352
+ G DV L
Sbjct: 255 REVDESGNPKAALRLTNLSWHPLGDDVVL 283
>gi|145219913|ref|YP_001130622.1| CMP/dCMP deaminase, zinc-binding [Prosthecochloris vibrioformis DSM
265]
gi|145206077|gb|ABP37120.1| CMP/dCMP deaminase, zinc-binding protein [Chlorobium
phaeovibrioides DSM 265]
Length = 180
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+ FMS A S+ + +IV+D ++ G
Sbjct: 28 WHEYFMSVARLISQRATCTRG---HIGAVIVRDNNILSTGYNGAPSGLPHCNETNCRIYR 84
Query: 47 -TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
T G HAE+ A+ +A G + A Y+T PC H
Sbjct: 85 STHPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 132
>gi|326502722|dbj|BAJ98989.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 169
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE--------------EAGEEARGAT 71
V C+IV++G VI G HAE++A++ E+ G
Sbjct: 11 PVGCVIVENGKVIASGSNRTNATRNATRHAEMEAIDVLLQEWQSIGLDQTLVAEKFAGCD 70
Query: 72 AYVTLEPCSHY 82
YVT EPC
Sbjct: 71 LYVTCEPCIMC 81
>gi|262038435|ref|ZP_06011809.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
gi|261747530|gb|EEY34995.1| dCMP deaminase [Leptotrichia goodfellowii F0264]
Length = 161
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A + V I+ D +IG G G P
Sbjct: 9 SWDEYFMGIAFLSGMRSK---DPSTQVGACIIDEDKKIIGIGY---NGFPMGSSDDNMPW 62
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + + A YVT PC+
Sbjct: 63 NKEGDFLNTKYPYVVHAELNAILNSIKSLKNAIIYVTHFPCNEC 106
>gi|218129661|ref|ZP_03458465.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
gi|317477506|ref|ZP_07936731.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
gi|217988391|gb|EEC54714.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697]
gi|316906307|gb|EFV28036.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides eggerthii 1_2_48FAA]
Length = 145
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 NITKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIEC 104
>gi|260770055|ref|ZP_05878988.1| putative deoxycytidylate deaminase [Vibrio furnissii CIP 102972]
gi|260615393|gb|EEX40579.1| putative deoxycytidylate deaminase [Vibrio furnissii CIP 102972]
gi|315182578|gb|ADT89491.1| deoxycytidylate deaminase, hypothetical [Vibrio furnissii NCTC
11218]
Length = 154
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 42/149 (28%), Gaps = 25/149 (16%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFYQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSANTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G YVT PC + I
Sbjct: 57 DRDMKYLKTLHAEENAILFAKRDLDGCEIYVTHFPCPNCAAKI-IQTGISAVHCPEQSAD 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
Q G+ V+ +
Sbjct: 116 FLSRWGDKIKVSQDMFLQAGVKVNWLPVH 144
>gi|325679436|ref|ZP_08159020.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
gi|324108864|gb|EGC03096.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
Length = 159
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 31/156 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP----- 53
M S+D F+ A + N V IV + ++ G GC
Sbjct: 5 MNYISWDDYFLGIAELSAARSK---DPNTQVGACIVSEENKILSVGYNGMPAGCNDDEMP 61
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
HAE+ A+ + + +G+ YV+L PC + I
Sbjct: 62 WGRKGDFLDTKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPC-----NECAKAIIQSGIK 116
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+ C D + G+ ++ +
Sbjct: 117 EVIYTCDKYADTDGTKASKMMFKMAGVKTRQIKQEH 152
>gi|170085575|ref|XP_001874011.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651563|gb|EDR15803.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 286
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+DA FM+ A SR + V ++V++ V+ G GGCP
Sbjct: 127 SWDAYFMTLASLASRRSNCMKR---RVGAVLVRENRVLATGYNGTPRGLKNCNEGGCPQC 183
Query: 54 -----------------HAEVQALEEAGEEARG--ATAYVTLEPCSHY 82
HAE AL EAG E G A Y PC
Sbjct: 184 NGRVLPSPSHSYECVCLHAEENALLEAGRERVGTNAVLYCNTCPCLRC 231
>gi|327403586|ref|YP_004344424.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
16823]
gi|327319094|gb|AEA43586.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
16823]
Length = 150
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 38/144 (26%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A ++ V LIV+DG +I G G P
Sbjct: 18 DKAYLRMAQTWAELSHCERKK---VGALIVRDGRIISDGY---NGTPAGFENCCEDQNGN 71
Query: 54 ------HAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAE A+ + + GAT ++TL PC C++ +++ GI+RVV +
Sbjct: 72 TQWYVLHAEANAILKVARSTNDCSGATLFITLSPC------KDCSKLVLQAGIKRVVYMM 125
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR 128
+ G+ +L G+ V
Sbjct: 126 EYK----DTTGVDFLKSAGVEVVH 145
>gi|315023983|gb|EFT36985.1| dCMP deaminase [Riemerella anatipestifer RA-YM]
Length = 143
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 38/147 (25%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
+ FD ++ A +++ V LIVKD +I G G P
Sbjct: 5 NKFDIAYLKMAQEWAKLSYCKRK---QVGALIVKDRTIISDGY---NGTPSGLENCCEDE 58
Query: 54 ---------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
HAE A+ + + A GAT Y+TL PC C++ I + GI+R+V
Sbjct: 59 QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPC------KECSKLIYQSGIKRLV 112
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GL +L G+ V +
Sbjct: 113 YIDHY----SDEEGLTFLKNAGVEVTQ 135
>gi|313206907|ref|YP_004046084.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer
DSM 15868]
gi|312446223|gb|ADQ82578.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer
DSM 15868]
gi|325335656|gb|ADZ11930.1| Deoxycytidylate deaminase [Riemerella anatipestifer RA-GD]
Length = 143
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 38/150 (25%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
+ FD ++ A +++ V LIVKD +I G G P
Sbjct: 5 NKFDIAYLKMAQEWAKLSYCKRK---QVGALIVKDRTIISDGY---NGTPSGLENCCEDE 58
Query: 54 ---------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
HAE A+ + + A GAT Y+TL PC C++ I + GI+R+V
Sbjct: 59 QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPC------KECSKLIYQSGIKRLV 112
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
GL +L G+ V ++ +
Sbjct: 113 YIDHY----SDEEGLTFLKNAGVEVTQIPQ 138
>gi|310816563|ref|YP_003964527.1| cytidine and deoxycytidylate deaminase family protein
[Ketogulonicigenium vulgare Y25]
gi|308755298|gb|ADO43227.1| cytidine and deoxycytidylate deaminase family protein
[Ketogulonicigenium vulgare Y25]
Length = 150
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEE 62
+M AL ++ G V +++ G +I R + HAEV A+
Sbjct: 6 YMIHALEEAKLAAMRGEV----PVGAVVIGPSGQIIARAGNRTRELHDPTAHAEVLAIRA 61
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A E YVTLEPC
Sbjct: 62 ACAVIGSERLIDHDLYVTLEPCPIC 86
>gi|209548083|ref|YP_002280000.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533839|gb|ACI53774.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 145
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-- 64
M AL + G P + ++V D I + R HAE+ A+ A
Sbjct: 1 MEMALEEA-RAAGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTAHAEIAAIRLACEG 58
Query: 65 ---EEARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 59 LGQERLVGADLYVTLEPCTMC 79
>gi|319795234|ref|YP_004156874.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus EPS]
gi|315597697|gb|ADU38763.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus EPS]
Length = 176
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 2 PVSSFDARFMSAAL---RFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCP 53
+ D R++ A+ +R N +IV DG V+
Sbjct: 17 TLDERDGRYLRKAIGWSHLARR-----QGNRPFGSVIVSADGEVLAEAYNNTGETGDCTG 71
Query: 54 HAEVQALEE-AG-----EEARGATAYVTLEPCSHY 82
HAE A+ AG + GAT Y + EPC
Sbjct: 72 HAETNAIRALAGRGISRDTLAGATLYASGEPCVMC 106
>gi|86741404|ref|YP_481804.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
gi|86568266|gb|ABD12075.1| tRNA-adenosine deaminase [Frankia sp. CcI3]
Length = 196
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 10 FMSAALRFSRWHVGLTST-----NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+M AL+ + T +P V +I DG I +AE+ A
Sbjct: 46 WMRRALKLA-----TTLPDPGADDPPVGAVIYGPDGTEIAAAHHDRERTADPTAYAEILA 100
Query: 60 LEEAGE-----EARGATAYVTLEPCSH 81
L +A + T TLEP +
Sbjct: 101 LRQAAQALGTWRLTDCTLVTTLEPGTM 127
>gi|189500555|ref|YP_001960025.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
gi|189495996|gb|ACE04544.1| CMP/dCMP deaminase zinc-binding [Chlorobium phaeobacteroides BS1]
Length = 174
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP----------- 53
+ FMS A SR + ++V+D ++ G G P
Sbjct: 28 WHEYFMSVAHLISRRATCTRGH---IGAVLVRDNNILSTGYNGAPSGLPHCNETTCRIYS 84
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + A Y+T PC H
Sbjct: 85 SKHPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 132
>gi|303237263|ref|ZP_07323833.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella disiens FB035-09AN]
gi|302482650|gb|EFL45675.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella disiens FB035-09AN]
Length = 148
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 31/107 (28%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M +S D R++ A +S V L+VKD ++I G G P
Sbjct: 1 MEISKQTLLDYRYLRMARVWSENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFE 54
Query: 54 ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + G+T YVT PC
Sbjct: 55 NICEDNDGLTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIEC 101
>gi|296532454|ref|ZP_06895178.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
gi|296267229|gb|EFH13130.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957]
Length = 201
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 29/147 (19%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVTAYGGCP------ 53
++ +D+R++ A ++W V ++V ++ G G P
Sbjct: 13 KLARWDSRYIGLAHHIAQWSK---DPRAKVGAVLVNQPQARIVATGF---NGFPSNVEDS 66
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
HAE AL AG ARG AYV +P + + +
Sbjct: 67 AERLQDKATKLRMMVHAEQNALLHAGHNARGCDAYVVGKPVCNTCATLLIQAGVKRVVAA 126
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGII 125
RV + L + G+
Sbjct: 127 APREGTASYWDRVGLLSIAMLREAGVE 153
>gi|296418533|ref|XP_002838885.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634868|emb|CAZ83076.1| unnamed protein product [Tuber melanosporum]
Length = 215
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVT-AYGGCPHAEVQALEE- 62
M+ AL +R + S V +I G ++ G + + G HAE A+++
Sbjct: 40 DHESLMTQALAIARKSTYIPSA-FCVGAIIATPSGDILSTGYSREHPGNTHAEQVAIDKL 98
Query: 63 --AGEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ A Y T+EPCS G + + IRRV V +P V G
Sbjct: 99 LSSSSTPEEAVVYTTMEPCSKRLSGNKSCVDRILECAWIRRVYAGVMEPVDFVENSGKAK 158
Query: 119 LSQKG 123
L G
Sbjct: 159 LEAAG 163
>gi|227432567|ref|ZP_03914548.1| competence protein ComEB [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351675|gb|EEJ41920.1| competence protein ComEB [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 158
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+ F++ A S T T V +IV+D +I G + G P
Sbjct: 7 SWHQYFIAQAAILSTRS---TCTRLHVGAIIVRDNRIIASGYNGSVSGTPHCTEVGDLMV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G G+ YVT PC
Sbjct: 64 DGHCIRAVHAEQNALMQAAKMGITIDGSEVYVTDVPCVQC 103
>gi|116694743|ref|YP_728954.1| cytosine deaminase-related enzyme [Ralstonia eutropha H16]
gi|113529242|emb|CAJ95589.1| cytosine deaminase-related enzyme [Ralstonia eutropha H16]
Length = 155
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M + ++ ++R + +V +T P ++V+DG V+ R V HAE
Sbjct: 1 MSTT---EAYLLDSIRLAMENVRERNTWP-FGAVVVRDGEVLARAVNQVDATCDPSAHAE 56
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QA+ A + G T Y + PCS
Sbjct: 57 MQAVRAASRALGKPDLSGCTVYASGYPCSMC 87
>gi|15807611|ref|NP_296350.1| deoxycytidylate deaminase [Deinococcus radiodurans R1]
gi|6460460|gb|AAF12167.1|AE002092_5 deoxycytidylate deaminase, putative [Deinococcus radiodurans R1]
Length = 145
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCP----- 53
M SFD ++ A ++ V I+ + V+G G G P
Sbjct: 1 MTRPSFDDLGLATARLWATRSA---DPKVQVGACILDRHHRVVGVGYNGRAAGEPNERES 57
Query: 54 ---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAEV AL A G T YVT EPCS R ++ + +
Sbjct: 58 LAQGASGYIHAEVNALLAANWNGEGHTLYVTHEPCSVCARLIVNSRRVG-RVVFATPYRE 116
Query: 105 DDPDVRVSGRGLQWLSQKGIIV 126
G + L GI V
Sbjct: 117 TARVEAGLPSGAEILRSAGIEV 138
>gi|317509467|ref|ZP_07967084.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
gi|316252241|gb|EFV11694.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
Length = 167
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F+ + +R +V A +IV+DG ++ HAE+ A+ EA
Sbjct: 3 FIQRTVDLARQNVAEGGR--PFATVIVRDGEILAESANKVAQTGDPTAHAEILAIREACA 60
Query: 65 ----EEARGATAYVTLEPCSHY 82
E GAT YV PC
Sbjct: 61 KLGTEHLVGATIYVLAHPCPMC 82
>gi|29349668|ref|NP_813171.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
gi|253569961|ref|ZP_04847370.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
gi|298383932|ref|ZP_06993493.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
1_1_14]
gi|29341578|gb|AAO79365.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482]
gi|251840342|gb|EES68424.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6]
gi|298263536|gb|EFI06399.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
1_1_14]
Length = 149
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 9 ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 63 NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|298481407|ref|ZP_06999599.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
D22]
gi|298272271|gb|EFI13840.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp.
D22]
Length = 149
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 9 ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 63 NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|332244689|ref|XP_003271506.1| PREDICTED: deoxycytidylate deaminase-like isoform 1 [Nomascus
leucogenys]
gi|332244697|ref|XP_003271510.1| PREDICTED: deoxycytidylate deaminase-like isoform 5 [Nomascus
leucogenys]
Length = 189
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 28 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDLLPWRRT 81
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 82 AKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 124
>gi|326336121|ref|ZP_08202293.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691630|gb|EGD33597.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 150
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A +++ V +IVKD ++I G G P
Sbjct: 8 DRAYMRMAQEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDEQGQ 61
Query: 54 ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+T+ PC
Sbjct: 62 TLWYVLHAEANAILKVAASTQSCAGATLYITMSPCKECS 100
>gi|29654671|ref|NP_820363.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 493]
gi|153209491|ref|ZP_01947406.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|154706754|ref|YP_001424808.1| hypothetical protein CBUD_1461 [Coxiella burnetii Dugway
5J108-111]
gi|161830445|ref|YP_001597217.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 331]
gi|165923928|ref|ZP_02219760.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 334]
gi|212212253|ref|YP_002303189.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii CbuG_Q212]
gi|212218777|ref|YP_002305564.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii CbuK_Q154]
gi|29541939|gb|AAO90877.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 493]
gi|120575344|gb|EAX31968.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|154356040|gb|ABS77502.1| hypothetical protein CBUD_1461 [Coxiella burnetii Dugway
5J108-111]
gi|161762312|gb|ABX77954.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 331]
gi|165916620|gb|EDR35224.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii RSA 334]
gi|212010663|gb|ACJ18044.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii CbuG_Q212]
gi|212013039|gb|ACJ20419.1| cytidine/deoxycytidylate deaminase family protein [Coxiella
burnetii CbuK_Q154]
Length = 159
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ D +F+ + + P LIV+D +I +GV T+ H+E+ A+
Sbjct: 4 NNDKQFLHEVFDLVKNSISHNLGGP-FGALIVRDSKIIAKGVNRVTTSNDPTAHSEIVAI 62
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ G YV EPC
Sbjct: 63 REACQKLNTFNLTGCYLYVNCEPCPMC 89
>gi|84503628|ref|ZP_01001669.1| probable deaminase [Oceanicola batsensis HTCC2597]
gi|84387959|gb|EAQ01010.1| probable deaminase [Oceanicola batsensis HTCC2597]
Length = 155
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D M A+ ++ +V + +IVKDG ++ V ++ HAE+
Sbjct: 1 MNKNDL--MQRAIDLAKENVENGGW--PFSTIIVKDGEILAEAVNSVQKSHDPSDHAEIA 56
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A ++ G T YV PC
Sbjct: 57 AIRIASKKLASPDLSGCTMYVVGLPCPMC 85
>gi|288803361|ref|ZP_06408794.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
melaninogenica D18]
gi|288334181|gb|EFC72623.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
melaninogenica D18]
Length = 166
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V L+VKD ++I G G P
Sbjct: 23 AVDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENICEDES 76
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + G+T YVT PC
Sbjct: 77 GVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIEC 116
>gi|297243273|ref|ZP_06927208.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis
AMD]
gi|296888807|gb|EFH27544.1| cytidine and deoxycytidylate deaminase [Gardnerella vaginalis
AMD]
Length = 153
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCP 53
M + M+ AL +R G V +++ G +IG+G
Sbjct: 1 MNMRDEIVFAMNQALNLARESASAGEV----PVGAVVLDGGGNIIGKGANMREQSADPLA 56
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAEV A+++A T VTLEPC
Sbjct: 57 HAEVLAMKDAAISRKSWNLSDCTLVVTLEPCPMC 90
>gi|302345385|ref|YP_003813738.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
25845]
gi|302149570|gb|ADK95832.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC
25845]
Length = 166
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V L+VKD ++I G G P
Sbjct: 23 AVDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENICEDES 76
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + G+T YVT PC
Sbjct: 77 GVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIEC 116
>gi|225020161|ref|ZP_03709353.1| hypothetical protein CORMATOL_00161 [Corynebacterium matruchotii
ATCC 33806]
gi|224947126|gb|EEG28335.1| hypothetical protein CORMATOL_00161 [Corynebacterium matruchotii
ATCC 33806]
Length = 158
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 16 RFSRWHVGLTSTNP----SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
++ L P V +I DG VIGRG HAE+ A+ EA
Sbjct: 14 AEAKMRHALAVPTPLGDVPVGAVIFDPDGNVIGRGSNRREADGDPTAHAEIIAIREAVRN 73
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 74 FHDGWRLTDCTIAVTLEPCCMC 95
>gi|329957030|ref|ZP_08297598.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides clarus YIT 12056]
gi|328523787|gb|EGF50879.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides clarus YIT 12056]
Length = 145
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIEC 104
>gi|327325690|gb|EGE67487.1| deoxycytidylate deaminase [Propionibacterium acnes HL096PA3]
Length = 152
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 39/133 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 10 TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66
Query: 54 ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ AL A + G+TAYVT +PCS ++
Sbjct: 67 PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSGCRKA 126
Query: 86 PPCAQFIIECGIR 98
A +
Sbjct: 127 LAAAGVVRAVWPD 139
>gi|238650838|ref|YP_002916693.1| tRNA-specific adenosine deaminase [Rickettsia peacockii str.
Rustic]
gi|238624936|gb|ACR47642.1| tRNA-specific adenosine deaminase [Rickettsia peacockii str.
Rustic]
Length = 168
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+F+ FM AL+ ++ N V ++V + +I HAE+
Sbjct: 10 NFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ +A + YVTLEPC+
Sbjct: 67 IAINKACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|313829388|gb|EFS67102.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL063PA2]
gi|314969803|gb|EFT13901.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL037PA1]
gi|315108887|gb|EFT80863.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL030PA2]
Length = 152
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 39/133 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 10 TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66
Query: 54 ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ AL A + G+TAYVT +PCS ++
Sbjct: 67 PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSGCRKA 126
Query: 86 PPCAQFIIECGIR 98
A +
Sbjct: 127 LAAAGVVRAVWPD 139
>gi|270294283|ref|ZP_06200485.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275750|gb|EFA21610.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 152
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDRRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIECS 105
>gi|282855290|ref|ZP_06264622.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J139]
gi|289425655|ref|ZP_06427427.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK187]
gi|289426995|ref|ZP_06428714.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J165]
gi|295131477|ref|YP_003582140.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK137]
gi|282581878|gb|EFB87263.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J139]
gi|289153956|gb|EFD02649.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK187]
gi|289159817|gb|EFD08002.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes J165]
gi|291377168|gb|ADE01023.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes SK137]
gi|313763352|gb|EFS34716.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL013PA1]
gi|313773396|gb|EFS39362.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL074PA1]
gi|313793535|gb|EFS41578.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA1]
gi|313802862|gb|EFS44075.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA2]
gi|313806308|gb|EFS44824.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA2]
gi|313810706|gb|EFS48420.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL083PA1]
gi|313814995|gb|EFS52709.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL059PA1]
gi|313819419|gb|EFS57133.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL046PA2]
gi|313821226|gb|EFS58940.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA1]
gi|313822320|gb|EFS60034.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA2]
gi|313826122|gb|EFS63836.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL063PA1]
gi|313831010|gb|EFS68724.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL007PA1]
gi|313833143|gb|EFS70857.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL056PA1]
gi|313838217|gb|EFS75931.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL086PA1]
gi|314916719|gb|EFS80550.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA4]
gi|314919155|gb|EFS82986.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA1]
gi|314921235|gb|EFS85066.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA3]
gi|314926066|gb|EFS89897.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL036PA3]
gi|314930337|gb|EFS94168.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL067PA1]
gi|314956120|gb|EFT00516.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL027PA1]
gi|314959653|gb|EFT03755.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA1]
gi|314962227|gb|EFT06328.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA2]
gi|314963259|gb|EFT07359.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL082PA1]
gi|314967161|gb|EFT11260.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL082PA2]
gi|314973919|gb|EFT18015.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL053PA1]
gi|314976847|gb|EFT20942.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL045PA1]
gi|314979367|gb|EFT23461.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL072PA2]
gi|314983031|gb|EFT27123.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA3]
gi|314984969|gb|EFT29061.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA1]
gi|314986357|gb|EFT30449.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA2]
gi|314988547|gb|EFT32638.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL005PA3]
gi|315079740|gb|EFT51728.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL053PA2]
gi|315080992|gb|EFT52968.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL078PA1]
gi|315083945|gb|EFT55921.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL027PA2]
gi|315085082|gb|EFT57058.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL002PA3]
gi|315089511|gb|EFT61487.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL072PA1]
gi|315091627|gb|EFT63603.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL110PA4]
gi|315093884|gb|EFT65860.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL060PA1]
gi|315097755|gb|EFT69731.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL038PA1]
gi|315098123|gb|EFT70099.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL059PA2]
gi|315102747|gb|EFT74723.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL046PA1]
gi|315104103|gb|EFT76079.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL050PA2]
gi|327325804|gb|EGE67596.1| deoxycytidylate deaminase [Propionibacterium acnes HL103PA1]
gi|327330862|gb|EGE72607.1| deoxycytidylate deaminase [Propionibacterium acnes HL096PA2]
gi|327443374|gb|EGE90028.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL043PA2]
gi|327446498|gb|EGE93152.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL043PA1]
gi|327447592|gb|EGE94246.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL013PA2]
gi|327451759|gb|EGE98413.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA3]
gi|327452265|gb|EGE98919.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL083PA2]
gi|327452482|gb|EGE99136.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL092PA1]
gi|328752304|gb|EGF65920.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL025PA2]
gi|328755417|gb|EGF69033.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL020PA1]
gi|328756990|gb|EGF70606.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL087PA1]
gi|328761604|gb|EGF75121.1| deoxycytidylate deaminase [Propionibacterium acnes HL099PA1]
gi|332676348|gb|AEE73164.1| deoxycytidylate deaminase [Propionibacterium acnes 266]
Length = 152
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 39/133 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 10 TVPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGAC 66
Query: 54 ----------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ AL A + G+TAYVT +PCS ++
Sbjct: 67 PRGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSGCRKA 126
Query: 86 PPCAQFIIECGIR 98
A +
Sbjct: 127 LAAAGVVRAVWPD 139
>gi|300024099|ref|YP_003756710.1| CMP/dCMP deaminase zinc-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525920|gb|ADJ24389.1| CMP/dCMP deaminase zinc-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 145
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA 63
MS AL +R G V +IV G V+ HAE+ A+ A
Sbjct: 1 MSLALDEARAAAERGEV----PVGAVIVSASGDVLVLAGNRTRELNDPTAHAEILAIRAA 56
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E YVTLEPC
Sbjct: 57 CSVLETERLVDCDLYVTLEPCPMC 80
>gi|150005156|ref|YP_001299900.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
gi|212694623|ref|ZP_03302751.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
gi|237711112|ref|ZP_04541593.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
gi|237727465|ref|ZP_04557946.1| deoxycytidylate deaminase [Bacteroides sp. D4]
gi|254883290|ref|ZP_05256000.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
gi|265750698|ref|ZP_06086761.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
gi|294777766|ref|ZP_06743212.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides vulgatus PC510]
gi|319642664|ref|ZP_07997310.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
gi|149933580|gb|ABR40278.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482]
gi|212663124|gb|EEB23698.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855]
gi|229434321|gb|EEO44398.1| deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4]
gi|229454956|gb|EEO60677.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA]
gi|254836083|gb|EET16392.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA]
gi|263237594|gb|EEZ23044.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA]
gi|294448354|gb|EFG16908.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides vulgatus PC510]
gi|317385752|gb|EFV66685.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A]
Length = 144
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 10 KLDKRYIRMASIWAENSYCERR---QVGALIVKDKMIISDGY---NGTPAGFENVCEDDN 63
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 64 GVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 103
>gi|308272937|emb|CBX29541.1| hypothetical protein N47_J05220 [uncultured Desulfobacterium sp.]
Length = 153
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 33/114 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
++D FM ++ T SV LIVKD ++ G
Sbjct: 6 SRPAWDTYFMDITTLVAKRS---TCLRRSVGALIVKDKRILSTGYNGAPSGLKHCLEIGC 62
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G R A Y T PCS +
Sbjct: 63 LREKMKIASGERHELCRGIHAEQNAIIQAAFHGVSIRDAVLYCTNLPCSICAKM 116
>gi|305680082|ref|ZP_07402892.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Corynebacterium matruchotii ATCC 14266]
gi|305660702|gb|EFM50199.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Corynebacterium matruchotii ATCC 14266]
Length = 147
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 16 RFSRWHVGLTSTNP----SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA--- 63
++ L P V +I DG VIGRG HAE+ A+ EA
Sbjct: 3 AEAKMRHALAVPTPLGDVPVGAVIFDPDGNVIGRGSNRREADGDPTAHAEIIAIREAVRN 62
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 63 FHDGWRLTDCTIAVTLEPCCMC 84
>gi|323448590|gb|EGB04487.1| putative deoxycytidine deaminase [Aureococcus anophagefferens]
Length = 188
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------------AYG 50
+D F S AL S V C+IV+D V+ G
Sbjct: 59 WDEYFASMALLASARSPCDRL---HVGCVIVRDRRVLAMGYNGFFRNAPHTSIVAHGHEQ 115
Query: 51 GCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV A+ A G GA+AY+T PC +
Sbjct: 116 ATVHAEVNAVSHAARTGIALDGASAYITHYPCVNC 150
>gi|237715563|ref|ZP_04546044.1| deoxycytidylate deaminase [Bacteroides sp. D1]
gi|262408572|ref|ZP_06085118.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
gi|294647040|ref|ZP_06724653.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294809884|ref|ZP_06768560.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
gi|229444272|gb|EEO50063.1| deoxycytidylate deaminase [Bacteroides sp. D1]
gi|262353437|gb|EEZ02531.1| ComE operon protein 2 [Bacteroides sp. 2_1_22]
gi|292637617|gb|EFF56022.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides ovatus SD CC 2a]
gi|294442913|gb|EFG11704.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides xylanisolvens SD CC 1b]
gi|295086823|emb|CBK68346.1| Deoxycytidylate deaminase [Bacteroides xylanisolvens XB1A]
Length = 149
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVKD ++I G G P
Sbjct: 9 ELDKRYIRMASIWAENSYCQRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDEN 62
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 63 NLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 102
>gi|239917977|ref|YP_002957535.1| pyrimidine reductase-like protein [Micrococcus luteus NCTC 2665]
gi|239839184|gb|ACS30981.1| pyrimidine reductase-like protein [Micrococcus luteus NCTC 2665]
Length = 263
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--EGGIPSPLEEGYLEKNFMC 340
RG + EGG + S + LVD + L + ++ G G + + + L
Sbjct: 176 HARGARVVHCEGGPRLFGSLAAAGLVDEVHLTVAPLLAGPAAGRVLTGEDGPGLPARLQL 235
Query: 341 VRRDYFGSDVCLEY 354
V+ + + L
Sbjct: 236 VQVLHDDGMLFLRL 249
>gi|227826855|ref|YP_002828634.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus M.14.25]
gi|227829432|ref|YP_002831211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus L.S.2.15]
gi|229578215|ref|YP_002836613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus Y.G.57.14]
gi|229583070|ref|YP_002841469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus Y.N.15.51]
gi|229584037|ref|YP_002842538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus M.16.27]
gi|284996814|ref|YP_003418581.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus islandicus L.D.8.5]
gi|227455879|gb|ACP34566.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus islandicus L.S.2.15]
gi|227458650|gb|ACP37336.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Sulfolobus islandicus M.14.25]
gi|228008929|gb|ACP44691.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus islandicus Y.G.57.14]
gi|228013786|gb|ACP49547.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Sulfolobus islandicus Y.N.15.51]
gi|228019086|gb|ACP54493.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus islandicus M.16.27]
gi|284444709|gb|ADB86211.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1-reductase [Sulfolobus islandicus L.D.8.5]
gi|323473972|gb|ADX84578.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Sulfolobus islandicus REY15A]
gi|323476967|gb|ADX82205.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Sulfolobus islandicus HVE10/4]
Length = 211
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 11/212 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + +S D + S ++ K + H +R++ DA++VG TV D+P L
Sbjct: 1 MRPYVIIFSTLSIDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T + +P+R+++ F L KI T P IV ++ + + I
Sbjct: 60 TVKY-SKNRRNPIRVVVTRSFNLDPSYKIFTT---PPSTIVYTSNYESEKVEEFNRKGVI 115
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ L + V L+VEGG + FI L D I + S + G G+
Sbjct: 116 VRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSF 174
Query: 328 PLEEGYL---EKNFMCVRRDYFG--SDVCLEY 354
+G++ + ++V L Y
Sbjct: 175 AQGDGFIGEDSPRLTLIDAKICECRNEVHLTY 206
>gi|254370029|ref|ZP_04986036.1| predicted protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151568274|gb|EDN33928.1| predicted protein [Francisella tularensis subsp. tularensis
FSC033]
Length = 66
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 56
Query: 54 HAEVQALEEA 63
HAE+ L A
Sbjct: 57 HAEILVLRSA 66
>gi|23097481|ref|NP_690947.1| hypothetical protein OB0026 [Oceanobacillus iheyensis HTE831]
gi|22775704|dbj|BAC11982.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 166
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ +IV DG ++G+G HAE+ A++EA T YVTLEPC
Sbjct: 31 PIGAVIVHDGEIVGKGFNLRESMQATLTHAELLAMQEANNEIGSWRLEDCTLYVTLEPCP 90
Query: 81 HY 82
Sbjct: 91 MC 92
>gi|161784292|sp|Q5RIV4|ADAT2_DANRE RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
Length = 214
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 27/139 (19%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL--- 60
+M+ A + + G V CL+V + +IG+G HAE+ AL
Sbjct: 24 WMAKAFDMAVEALENGEV----PVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQV 79
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGRSPP------CAQFIIECGIRRVVVCVDD 106
++ E YVT+EPC + +D
Sbjct: 80 LDWCRLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139
Query: 107 PDVRVSGRGLQWLSQKGII 125
+ G + G
Sbjct: 140 SSDHLPHTGTSFKCIAGYR 158
>gi|39971965|ref|XP_367373.1| hypothetical protein MGG_07298 [Magnaporthe oryzae 70-15]
gi|145019803|gb|EDK04031.1| hypothetical protein MGG_07298 [Magnaporthe oryzae 70-15]
Length = 339
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++DA FMS A ++ + V C+++++ V+ G G P
Sbjct: 190 TWDAYFMSLASLAAQRSNCMKR---RVGCVLIREKRVVSTGY---NGTPRGLLNCGEGGC 243
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + G+ Y PC
Sbjct: 244 GRCNEGLSSGVGLATCLCLHAEENALLEAGRDRIRDGSILYCDTCPCLTCS 294
>gi|316971942|gb|EFV55655.1| guanine deaminase [Trichinella spiralis]
Length = 161
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+ A + + V + L+VK+G V+ G HAEV + A
Sbjct: 10 EALLKMACQEAERGV-ESDDGGPFGALVVKNGRVLAIGHNEVLLTNDPTAHAEVTVIRRA 68
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G Y + +PC
Sbjct: 69 AAALGHWNLAGCELYTSCKPCPMC 92
>gi|119473533|ref|XP_001258642.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
fischeri NRRL 181]
gi|119406795|gb|EAW16745.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya
fischeri NRRL 181]
Length = 280
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI-- 325
D LL L G+ S+++EGGA + +S + L+DS+I+ + +G+GG+
Sbjct: 183 HRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQNLIDSVIVTIAPTWLGQGGVVV 242
Query: 326 --PSPLEEGYLEK---NFMCVRRDYFGSDVCL 352
E + V+ FG DV L
Sbjct: 243 SPKRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274
>gi|229552285|ref|ZP_04441010.1| competence protein ComEB [Lactobacillus rhamnosus LMS2-1]
gi|229314357|gb|EEN80330.1| competence protein ComEB [Lactobacillus rhamnosus LMS2-1]
Length = 170
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP---------- 53
S+D F+ A + S +T V ++V++ +I G G P
Sbjct: 32 SWDHYFLELAKKVSERSTCERAT---VGAVLVQEHRIIATGYNGAISGDPHCDEAGHLMR 88
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YV PC +
Sbjct: 89 DGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLNC 128
>gi|118197658|ref|YP_874051.1| deoxycytidylate deaminase [Thermus phage phiYS40]
gi|116266349|gb|ABJ91432.1| deoxycytidylate deaminase [Thermus phage phiYS40]
Length = 142
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 31/104 (29%)
Query: 3 VSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP------- 53
+ + RF + ++ V +IV + ++ G G P
Sbjct: 1 MDKWHKRF----IELAKTIAQYSKDPRTKVGAVIVDNERRIVSMGY---NGFPRKVLDLE 53
Query: 54 --------------HAEVQALEEAGEEARGATAYV-TLEPCSHY 82
HAE+ A+ A + G T YV PC+
Sbjct: 54 ERLNNRKEKLKYVVHAELNAILNAKRDIEGTTIYVYPYFPCNEC 97
>gi|213421646|ref|ZP_03354712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 182
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
++ LK+ S D MA S IT ++ V LRAQS AIL TVLADD
Sbjct: 5 MRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADD 64
Query: 205 PELTCRL-----------NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
P LT R P+RI++D +++ +I++ I +D
Sbjct: 65 PALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGE--TWIARTQED 122
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
+ + DL L+ L + + S+ VE G +A + + + LVD +I+
Sbjct: 123 SHAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIV 182
>gi|170017672|ref|YP_001728591.1| deoxycytidylate deaminase [Leuconostoc citreum KM20]
gi|169804529|gb|ACA83147.1| Deoxycytidylate deaminase [Leuconostoc citreum KM20]
Length = 161
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+D F++ A S T T V +IV++ +I G + G P
Sbjct: 8 SWDQYFIAQAAILSTRS---TCTRLHVGAIIVQNNRIIASGYNGSVSGTPHCTEVGDLMV 64
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GA YVT PC
Sbjct: 65 DGHCVRAVHAEQNALMQAAQMGISVSGAEFYVTDVPCIQC 104
>gi|28901047|ref|NP_800702.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|260362476|ref|ZP_05775409.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|260879896|ref|ZP_05892251.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Vibrio parahaemolyticus AN-5034]
gi|260894571|ref|ZP_05903067.1| protein RibG [Vibrio parahaemolyticus Peru-466]
gi|28809560|dbj|BAC62535.1| putative deoxycytidylate deaminase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086410|gb|EFO36105.1| protein RibG [Vibrio parahaemolyticus Peru-466]
gi|308091689|gb|EFO41384.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein
[Vibrio parahaemolyticus AN-5034]
gi|308113341|gb|EFO50881.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 154
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A + W + V +I ++ G Y G
Sbjct: 2 ISKWAKRFYQMAELVASWSK---DPSTQVGAVITNQNRIVSVGFNGYPHGVSDSVDTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ + + G +VT PC + I
Sbjct: 59 ELKYLKTLHAEENAILFSKRDLDGCDIWVTHFPCPNCAAKI-IQTGISRVHCPEQSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 118 SRWGDKIQVSQDMFDQAGVEVDW 140
>gi|313901432|ref|ZP_07834892.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
subterraneus DSM 13965]
gi|313468303|gb|EFR63757.1| bifunctional deaminase-reductase domain protein [Thermaerobacter
subterraneus DSM 13965]
Length = 252
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 13/222 (5%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
R ++ + + + D + M G + + ++ +
Sbjct: 27 PPHRPYVLVNMVSTVDGKVTMGRGAVQEPIGSKVDHGLMARLRAPVDAVLRGAGTVRAYD 86
Query: 206 ELTCRLNGLQEHSPMRIILDPHF--------KLSLDSKIIKTALLAPVIIVTENDDPVLA 257
E R + L LD++ + A P+++
Sbjct: 87 VPPRVPAEYAERRQARGLPPQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPADKV 146
Query: 258 LAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A R+ + + L + G+ LL EGG V + + + +VD +
Sbjct: 147 EAVRQVADVAFAGEEQVEMRAALALLRERYGIQRLLSEGGPTVNFAMLEAGVVDELFWTV 206
Query: 316 SQIVIG-EGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEY 354
+ + G + L+ + ++ L Y
Sbjct: 207 APKIAGYAEDKTMVMGPRALDPLVRLSLASAFFHEGELYLRY 248
>gi|254389244|ref|ZP_05004473.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
27064]
gi|326444934|ref|ZP_08219668.1| putative deaminase [Streptomyces clavuligerus ATCC 27064]
gi|197702960|gb|EDY48772.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC
27064]
Length = 154
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCPHAEVQALEE 62
D R+M A+ + SV +IV + G + G + HAE AL +
Sbjct: 7 DQDLRWMQHAIGLAALCPPAAGA-YSVGAVIVGEGGAELATGYSREADPRGHAEEAALAK 65
Query: 63 AGE---EARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-GLQ 117
AT Y TLEPCS PCA I+ GI RVV+ +P+ V+ G++
Sbjct: 66 LPGGDLRLATATIYSTLEPCSQRSADRTPCAGLILRAGIPRVVIAWREPNHFVTDCVGVE 125
Query: 118 WLSQKGIIVDRMM 130
L G+ V M
Sbjct: 126 QLQAAGVTVVEMP 138
>gi|169630059|ref|YP_001703708.1| hypothetical protein MAB_2976 [Mycobacterium abscessus ATCC 19977]
gi|169242026|emb|CAM63054.1| Conserved hypothetical protein (possible reductase) [Mycobacterium
abscessus]
Length = 260
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
RG++ +L EGG A+ + +++ LVD + L + IG G+ + + V
Sbjct: 185 HARGLSRVLCEGGPALLGTLLSAHLVDELCLTIAPTTIGGAGLRITSGPAEVLTGWRRV- 243
Query: 343 RDYFGSD----VCLEYIG 356
+D + Y+
Sbjct: 244 --LLLADADGYLFTRYVP 259
>gi|258648600|ref|ZP_05736069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
tannerae ATCC 51259]
gi|260851385|gb|EEX71254.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
tannerae ATCC 51259]
Length = 145
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A +S V LIVKD ++I G G P
Sbjct: 10 LDNRYLRMARIWSENSYCKRR---QVGALIVKDKMIISDGY---NGTPSGFENQCEDELN 63
Query: 54 -------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + +G + GAT YVT PC
Sbjct: 64 ITKPYVLHAEANAITKIARSGNNSDGATLYVTDAPCIECS 103
>gi|167765189|ref|ZP_02437302.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
43183]
gi|167696817|gb|EDS13396.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC
43183]
Length = 145
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 NLTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIEC 104
>gi|302835481|ref|XP_002949302.1| hypothetical protein VOLCADRAFT_89616 [Volvox carteri f.
nagariensis]
gi|300265604|gb|EFJ49795.1| hypothetical protein VOLCADRAFT_89616 [Volvox carteri f.
nagariensis]
Length = 192
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
S+ D +M V ++V ++ RG HAE+
Sbjct: 33 EFSAADVHYMGM--ALDEARAAAAEGEVPVGAVLVHGDRILARGHNRVHRLRSPVAHAEM 90
Query: 58 QAL-----EEAGEEARGATAYVTLEPCSHY 82
+ + + GAT Y TLEPC
Sbjct: 91 LCITAGASKLSSWRLLGATLYATLEPCPMC 120
>gi|212703995|ref|ZP_03312123.1| hypothetical protein DESPIG_02048 [Desulfovibrio piger ATCC 29098]
gi|212672588|gb|EEB33071.1| hypothetical protein DESPIG_02048 [Desulfovibrio piger ATCC 29098]
Length = 188
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQA 59
R M AA+ +R + L+ LI G V+ HAEV A
Sbjct: 26 ELHRRHMLAAIEAAREGM-LSGKGGPFGALITDPAGRVVSVACNEVLASRDCTMHAEVAA 84
Query: 60 LEEAGE-EARGATAYVTLEPCSHY 82
L + G + RG T Y T PC
Sbjct: 85 LRKVGHLDLRGHTLYATGFPCVMC 108
>gi|315174005|gb|EFU18022.1| ComE operon protein 2 [Enterococcus faecalis TX1346]
Length = 167
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
M +D FM ++ S T T +V IV+D +I G GG
Sbjct: 1 MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 58 CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKM 104
>gi|312869691|ref|ZP_07729838.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus oris PB013-T2-3]
gi|311094740|gb|EFQ53037.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lactobacillus oris PB013-T2-3]
Length = 164
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
+ ++VKD +IGRG HAE+ A+ EA E YVTLEPC
Sbjct: 26 PIGAVVVKDNQIIGRGHNMREHFQDVTYHAEMLAIMEACERLHSWRLEDCDLYVTLEPCI 85
Query: 81 HYG 83
Sbjct: 86 MCS 88
>gi|61742821|ref|NP_001012750.1| deoxycytidylate deaminase isoform a [Homo sapiens]
gi|66840174|gb|AAH88357.2| DCMP deaminase [Homo sapiens]
gi|119625102|gb|EAX04697.1| dCMP deaminase, isoform CRA_a [Homo sapiens]
gi|119625103|gb|EAX04698.1| dCMP deaminase, isoform CRA_a [Homo sapiens]
Length = 189
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 28 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 81
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 82 AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNEC 124
>gi|46137423|ref|XP_390403.1| hypothetical protein FG10227.1 [Gibberella zeae PH-1]
Length = 467
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 39/115 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM A ++ + V C++V K+ VI G G P
Sbjct: 231 WDLYFMELASLAAQRSNCMKR---RVGCVLVGKERRVISTGY---NGTPRGLQNCADGGC 284
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPP 87
HAE AL EAG E G+ Y PC
Sbjct: 285 PRCNDGNSSGVGLSTCLCIHAEENALLEAGRERIREGSILYCDTCPCLTCSIKIC 339
>gi|329940196|ref|ZP_08289478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
griseoaurantiacus M045]
gi|329301022|gb|EGG44918.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
griseoaurantiacus M045]
Length = 300
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
RG+T LL EGG + F+ + ++D + L + +++ G E + + F V
Sbjct: 225 AERGLTRLLTEGGPRLLGQFVAADVLDELCLTVAPVMVAGGAQRIGGGPEVRVPRRFRPV 284
Query: 342 RRDYFGSDVCLEYIGK 357
+ Y +
Sbjct: 285 SVLEEEGFLFTRYRRE 300
>gi|313902768|ref|ZP_07836165.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
gi|313466888|gb|EFR62405.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965]
Length = 200
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V + V +I RG HAE+ L EA G G T YVTLEPC
Sbjct: 49 PVGAVAVYQDAIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPCP 108
Query: 81 HY 82
Sbjct: 109 MC 110
>gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein
[Methanoplanus petrolearius DSM 11571]
gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 227
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 13/204 (6%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + + +H RA+ DAI+VG T+ D+ LT R ++ SP
Sbjct: 22 LTLKKGASSKILMKYMDHATDILLHKTRAEYDAIMVGSNTINIDNSFLTVR--SVKGKSP 79
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
+R+I + +S ++ AP +I + + + C D L
Sbjct: 80 LRVIPSSRAAIPPESNVLG--PDAPTLIAVSKKASPENIRILEDKGADVVCVGEDKVDLP 137
Query: 280 TILV----GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
++ GV+ L++EGG + + + RLVD I L ++G PS + ++E
Sbjct: 138 LLMKTLVENYGVSKLMIEGGPTLNYYMLQDRLVDEIRLIHLPFIVGGSDTPSLVGGMHIE 197
Query: 336 KN-----FMCVRRDYFGSDVCLEY 354
G+++ EY
Sbjct: 198 SEEEMFSLQLKNYYMCGTNLVTEY 221
>gi|296333283|ref|ZP_06875736.1| putative enzyme associated to DNA transport (competence) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305675213|ref|YP_003866885.1| hypothetical protein BSUW23_12690 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149481|gb|EFG90377.1| putative enzyme associated to DNA transport (competence) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305413457|gb|ADM38576.1| putative enzyme associated with DNA transport (competence)
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 189
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S++ FM+ + + T SV IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 48 ------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQC 101
>gi|189350770|ref|YP_001946398.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
multivorans ATCC 17616]
gi|189334792|dbj|BAG43862.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
multivorans ATCC 17616]
Length = 159
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
V ++V+ V+ RG G HAE+ AL A + + G YVTLEPC
Sbjct: 18 PVGAVLVRGDEVLARGFNHPIGGHDPSAHAEMAALRMAAQHLQNYRMPGCELYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|163867550|ref|YP_001608749.1| cytosine/adenosine deaminase [Bartonella tribocorum CIP 105476]
gi|161017196|emb|CAK00754.1| Cytosine/adenosine deaminase [Bartonella tribocorum CIP 105476]
Length = 148
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M ++ M AL ++W V +I + +I R TAY HAE
Sbjct: 1 MTLTP-----MEIALLEAQWAAKKDEV--PVGAVITRGKTIIARAGNFIKTAYDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++ + A E YVTLEPC+
Sbjct: 54 IRVIRMACETLQSERLPDCDLYVTLEPCAMC 84
>gi|308802662|ref|XP_003078644.1| putative deaminase (ISS) [Ostreococcus tauri]
gi|116057097|emb|CAL51524.1| putative deaminase (ISS) [Ostreococcus tauri]
Length = 247
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD--GIVIGRGVT--AYGGCP--HAE 56
S DA M AL +R+ G + +IV++ G V+ G P HAE
Sbjct: 69 SLDASRMRRALEIARFGGARGEV----PIGAVIVENDTGRVVAACANACERDGDPTAHAE 124
Query: 57 VQALEEAGE------EARGATAYVTLEPCSHY 82
++A+ E R T YVTLEPC+
Sbjct: 125 LRAIRMGAETLGNWRHLRKTTMYVTLEPCAMC 156
>gi|254796483|ref|YP_003081319.1| tRNA-specific adenosine deaminase [Neorickettsia risticii str.
Illinois]
gi|254589716|gb|ACT69078.1| tRNA-specific adenosine deaminase [Neorickettsia risticii str.
Illinois]
Length = 139
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
M A+ +R V ++V+ G VI HAE+ + EA +
Sbjct: 1 MELAISVARESDCEV----PVGAVLVRQGAVIASSGNRVFRDSDPTAHAEMLVIREAIQR 56
Query: 67 -----ARGATAYVTLEPCSHY 82
YVTLEPC
Sbjct: 57 LGVKFLVDFELYVTLEPCPMC 77
>gi|220925961|ref|YP_002501263.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacterium nodulans ORS 2060]
gi|219950568|gb|ACL60960.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacterium nodulans ORS 2060]
Length = 239
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-------SPLEEGYLEKNF 338
GV +LL+EGG A+ +F+ + L+D + L + G G+P +P E+ +
Sbjct: 155 GVGTLLLEGGGAINGAFLKAGLIDEVSLLVHPAIDGLAGVPSIFDYRGAPDEKPAAGRAL 214
Query: 339 MCVRRDYF-GSDVCLEYIGKN 358
R + G V L Y ++
Sbjct: 215 RHFRTETLDGGTVWLRYRVED 235
>gi|79361008|ref|NP_564523.3| emb2191 (embryo defective 2191); catalytic/ hydrolase/ zinc ion
binding [Arabidopsis thaliana]
gi|48310033|gb|AAT41740.1| At1g48175 [Arabidopsis thaliana]
gi|50198832|gb|AAT70448.1| At1g48175 [Arabidopsis thaliana]
gi|332194138|gb|AEE32259.1| Cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
Length = 182
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE-- 61
+M AL ++ + + V C+ ++DG VI G HAE++A++
Sbjct: 10 HNYMGFALHQAKLALE--ALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEMEAIDQL 67
Query: 62 ------------EAGEEARGATAYVTLEPCSHY 82
+ E+ YVT EPC
Sbjct: 68 VGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMC 100
>gi|29376942|ref|NP_816096.1| comE operon protein 2, putative [Enterococcus faecalis V583]
gi|227519834|ref|ZP_03949883.1| competence protein ComEB [Enterococcus faecalis TX0104]
gi|227553981|ref|ZP_03984028.1| competence protein ComEB [Enterococcus faecalis HH22]
gi|229545131|ref|ZP_04433856.1| competence protein ComEB [Enterococcus faecalis TX1322]
gi|229549379|ref|ZP_04438104.1| competence protein ComEB [Enterococcus faecalis ATCC 29200]
gi|255972085|ref|ZP_05422671.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
gi|255975152|ref|ZP_05425738.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
gi|256763140|ref|ZP_05503720.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
gi|256853808|ref|ZP_05559173.1| late competence protein ComEB [Enterococcus faecalis T8]
gi|256956725|ref|ZP_05560896.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
gi|256961258|ref|ZP_05565429.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
gi|256963615|ref|ZP_05567786.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
gi|257079679|ref|ZP_05574040.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
gi|257081974|ref|ZP_05576335.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
gi|257084526|ref|ZP_05578887.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
gi|257090637|ref|ZP_05584998.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
gi|257416685|ref|ZP_05593679.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis AR01/DG]
gi|257419901|ref|ZP_05596895.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
gi|257421911|ref|ZP_05598901.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
gi|293383542|ref|ZP_06629452.1| ComE operon protein 2 [Enterococcus faecalis R712]
gi|293387345|ref|ZP_06631901.1| ComE operon protein 2 [Enterococcus faecalis S613]
gi|294780837|ref|ZP_06746192.1| ComE operon protein 2 [Enterococcus faecalis PC1.1]
gi|300860396|ref|ZP_07106483.1| ComE operon protein 2 [Enterococcus faecalis TUSoD Ef11]
gi|307270792|ref|ZP_07552082.1| ComE operon protein 2 [Enterococcus faecalis TX4248]
gi|307271556|ref|ZP_07552828.1| ComE operon protein 2 [Enterococcus faecalis TX0855]
gi|307285769|ref|ZP_07565903.1| ComE operon protein 2 [Enterococcus faecalis TX0860]
gi|307287672|ref|ZP_07567715.1| ComE operon protein 2 [Enterococcus faecalis TX0109]
gi|307290498|ref|ZP_07570411.1| ComE operon protein 2 [Enterococcus faecalis TX0411]
gi|312899878|ref|ZP_07759196.1| ComE operon protein 2 [Enterococcus faecalis TX0470]
gi|312905172|ref|ZP_07764293.1| ComE operon protein 2 [Enterococcus faecalis TX0635]
gi|312906092|ref|ZP_07765104.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 512]
gi|312909438|ref|ZP_07768293.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 516]
gi|312953529|ref|ZP_07772367.1| ComE operon protein 2 [Enterococcus faecalis TX0102]
gi|29344407|gb|AAO82166.1| comE operon protein 2, putative [Enterococcus faecalis V583]
gi|227072724|gb|EEI10687.1| competence protein ComEB [Enterococcus faecalis TX0104]
gi|227176884|gb|EEI57856.1| competence protein ComEB [Enterococcus faecalis HH22]
gi|229305616|gb|EEN71612.1| competence protein ComEB [Enterococcus faecalis ATCC 29200]
gi|229309676|gb|EEN75663.1| competence protein ComEB [Enterococcus faecalis TX1322]
gi|255963103|gb|EET95579.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T1]
gi|255968024|gb|EET98646.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T2]
gi|256684391|gb|EEU24086.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3]
gi|256710751|gb|EEU25794.1| late competence protein ComEB [Enterococcus faecalis T8]
gi|256947221|gb|EEU63853.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5]
gi|256951754|gb|EEU68386.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Merz96]
gi|256954111|gb|EEU70743.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704]
gi|256987709|gb|EEU75011.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1]
gi|256990004|gb|EEU77306.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol]
gi|256992556|gb|EEU79858.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1]
gi|256999449|gb|EEU85969.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188]
gi|257158513|gb|EEU88473.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ARO1/DG]
gi|257161729|gb|EEU91689.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11]
gi|257163735|gb|EEU93695.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98]
gi|291079054|gb|EFE16418.1| ComE operon protein 2 [Enterococcus faecalis R712]
gi|291083243|gb|EFE20206.1| ComE operon protein 2 [Enterococcus faecalis S613]
gi|294452082|gb|EFG20529.1| ComE operon protein 2 [Enterococcus faecalis PC1.1]
gi|295113494|emb|CBL32131.1| ComE operon protein 2 [Enterococcus sp. 7L76]
gi|300849435|gb|EFK77185.1| ComE operon protein 2 [Enterococcus faecalis TUSoD Ef11]
gi|306498445|gb|EFM67949.1| ComE operon protein 2 [Enterococcus faecalis TX0411]
gi|306501410|gb|EFM70713.1| ComE operon protein 2 [Enterococcus faecalis TX0109]
gi|306502530|gb|EFM71797.1| ComE operon protein 2 [Enterococcus faecalis TX0860]
gi|306511828|gb|EFM80826.1| ComE operon protein 2 [Enterococcus faecalis TX0855]
gi|306512906|gb|EFM81548.1| ComE operon protein 2 [Enterococcus faecalis TX4248]
gi|310627738|gb|EFQ11021.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 512]
gi|310628541|gb|EFQ11824.1| ComE operon protein 2 [Enterococcus faecalis TX0102]
gi|310631562|gb|EFQ14845.1| ComE operon protein 2 [Enterococcus faecalis TX0635]
gi|311290111|gb|EFQ68667.1| ComE operon protein 2 [Enterococcus faecalis DAPTO 516]
gi|311292874|gb|EFQ71430.1| ComE operon protein 2 [Enterococcus faecalis TX0470]
gi|315030173|gb|EFT42105.1| ComE operon protein 2 [Enterococcus faecalis TX4000]
gi|315032942|gb|EFT44874.1| ComE operon protein 2 [Enterococcus faecalis TX0017]
gi|315035754|gb|EFT47686.1| ComE operon protein 2 [Enterococcus faecalis TX0027]
gi|315144858|gb|EFT88874.1| ComE operon protein 2 [Enterococcus faecalis TX2141]
gi|315146725|gb|EFT90741.1| ComE operon protein 2 [Enterococcus faecalis TX4244]
gi|315150113|gb|EFT94129.1| ComE operon protein 2 [Enterococcus faecalis TX0012]
gi|315152019|gb|EFT96035.1| ComE operon protein 2 [Enterococcus faecalis TX0031]
gi|315155382|gb|EFT99398.1| ComE operon protein 2 [Enterococcus faecalis TX0043]
gi|315159042|gb|EFU03059.1| ComE operon protein 2 [Enterococcus faecalis TX0312]
gi|315161635|gb|EFU05652.1| ComE operon protein 2 [Enterococcus faecalis TX0645]
gi|315164895|gb|EFU08912.1| ComE operon protein 2 [Enterococcus faecalis TX1302]
gi|315166356|gb|EFU10373.1| ComE operon protein 2 [Enterococcus faecalis TX1341]
gi|315170253|gb|EFU14270.1| ComE operon protein 2 [Enterococcus faecalis TX1342]
gi|315574319|gb|EFU86510.1| ComE operon protein 2 [Enterococcus faecalis TX0309B]
gi|315579112|gb|EFU91303.1| ComE operon protein 2 [Enterococcus faecalis TX0630]
gi|315580206|gb|EFU92397.1| ComE operon protein 2 [Enterococcus faecalis TX0309A]
gi|323481437|gb|ADX80876.1| comE operon protein 2 [Enterococcus faecalis 62]
gi|327535732|gb|AEA94566.1| ComE operon protein 2 [Enterococcus faecalis OG1RF]
gi|329572337|gb|EGG53994.1| ComE operon protein 2 [Enterococcus faecalis TX1467]
Length = 167
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
M +D FM ++ S T T +V IV+D +I G GG
Sbjct: 1 MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 58 CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKM 104
>gi|332293298|ref|YP_004431907.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332171384|gb|AEE20639.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 147
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG- 64
FM A+ +R T + +IV+ G VI GG HAE++ ++ A
Sbjct: 7 FMKQAIALAREGK-DTDGGGAFGAVIVRSGQVIAACHNLVGGSQDPTQHAELRCIQLACK 65
Query: 65 ----EEARGATAYVTLEPCSHY 82
++ Y + PC
Sbjct: 66 ALGTKDLSDCDLYTSCVPCMMC 87
>gi|257087478|ref|ZP_05581839.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
gi|307277118|ref|ZP_07558222.1| ComE operon protein 2 [Enterococcus faecalis TX2134]
gi|256995508|gb|EEU82810.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6]
gi|306506048|gb|EFM75214.1| ComE operon protein 2 [Enterococcus faecalis TX2134]
gi|315025365|gb|EFT37297.1| ComE operon protein 2 [Enterococcus faecalis TX2137]
Length = 167
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
M +D FM ++ S T T +V IV+D +I G GG
Sbjct: 1 MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 58 CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKM 104
>gi|303320915|ref|XP_003070452.1| RibD C-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110148|gb|EER28307.1| RibD C-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320033048|gb|EFW14997.1| riboflavin-specific deaminase [Coccidioides posadasii str.
Silveira]
Length = 611
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 31/238 (13%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
K H+TL A S D I +A ++G SK H LR++ DAIL+G+GT LAD+P
Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407
Query: 206 ELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTEND 252
L CR + P +I+DP + ++ + AP ++V+
Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467
Query: 253 DP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + L G+ S++VEGG V +N
Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527
Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G GG+ + + + G DV +
Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585
>gi|298530999|ref|ZP_07018400.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509022|gb|EFI32927.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
ASO3-1]
Length = 171
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 17/85 (20%)
Query: 11 MSAALRFS--RWHVGLTSTNPSVACLIVKDG--IVIGRGVTA----YGGCPHAEVQALEE 62
M AL+ + G V ++ G ++ G HAE+ AL
Sbjct: 26 MQEALKEAGKARSRGEV----PVGAVLADAGTGEILAGGSNRCIELNDPTAHAEIIALRR 81
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
AG+ G VTLEPC
Sbjct: 82 AGQARGNYRLPGTVLAVTLEPCLMC 106
>gi|119179569|ref|XP_001241355.1| hypothetical protein CIMG_08518 [Coccidioides immitis RS]
Length = 612
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 31/238 (13%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
K H+TL A S D I +A ++G SK H LR++ DAIL+G+GT LAD+P
Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407
Query: 206 ELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTEND 252
L CR + P +I+DP + ++ + AP ++V+
Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467
Query: 253 DP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + L G+ S++VEGG V +N
Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527
Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G GG+ + + + G DV +
Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585
>gi|218261316|ref|ZP_03476184.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
DSM 18315]
gi|218224097|gb|EEC96747.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii
DSM 18315]
Length = 144
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIV+D ++I G G P
Sbjct: 10 ELDKRYLRMAAVWAENSYCKRR---QVGALIVRDQMIISDGY---NGTPSGFENVCEDEN 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ + ++ AT YVT PC
Sbjct: 64 NVTKPYVLHAEANAITKVAASSNSSKDATIYVTSAPCIEC 103
>gi|16080775|ref|NP_391603.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
gi|221311684|ref|ZP_03593531.1| hypothetical protein Bsubs1_20116 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316011|ref|ZP_03597816.1| hypothetical protein BsubsN3_20032 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320922|ref|ZP_03602216.1| hypothetical protein BsubsJ_19975 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325206|ref|ZP_03606500.1| hypothetical protein BsubsS_20136 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|1176952|sp|P45862|YWJB_BACSU RecName: Full=Uncharacterized protein ywjB
gi|853755|emb|CAA89863.1| Unknown [Bacillus subtilis subsp. subtilis str. 168]
gi|2636259|emb|CAB15750.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
168]
Length = 174
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 2/123 (1%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S +L PV + V + + + L +++ +
Sbjct: 53 STYEHVKVLTPVFPYQDKTCYVFTGSPDSYQDEHVTFINEGARAFTARLKQEKGSNIWIA 112
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA + + F+ +D I+ +V+G GIP E E FG V L
Sbjct: 113 GGAELVNDFMKEDAIDEFIITVIPVVLGS-GIPLFHE-LTNETKLRLKGTKQFGQAVQLH 170
Query: 354 YIG 356
Y+
Sbjct: 171 YVR 173
>gi|254443834|ref|ZP_05057310.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Verrucomicrobiae bacterium DG1235]
gi|198258142|gb|EDY82450.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Verrucomicrobiae bacterium DG1235]
Length = 174
Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
++L L RG + GG + F+++ LVD + + ++ G G +PL
Sbjct: 92 PPDEILAELAKRGRNKTALLGGGEIYTRFLSAGLVDELWITIEPLLFGAG---TPLLSQP 148
Query: 334 LEKNFMCVRRDYFGSD-VCLEYIGKN 358
LE F G + + L+Y+ +
Sbjct: 149 LELQFKLHSSAPLGKNALLLKYLPQK 174
>gi|51246123|ref|YP_066007.1| deoxycytidylate deaminase [Desulfotalea psychrophila LSv54]
gi|50877160|emb|CAG37000.1| probable deoxycytidylate deaminase [Desulfotalea psychrophila
LSv54]
Length = 165
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM+ A+ ++ + V I K ++G G G P
Sbjct: 8 SWDEYFMAVAILSAQRSK---DPSTQVGACIANKANKIVGVGY---NGFPLGCDDDDLPW 61
Query: 54 ---------------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + + YV L PC+
Sbjct: 62 GREGDFLETKYPYVCHAELNAVLNSSSRDLMDCKIYVALFPCNEC 106
>gi|34581121|ref|ZP_00142601.1| cytosine deaminase [Rickettsia sibirica 246]
gi|229587195|ref|YP_002845696.1| Cytosine deaminase [Rickettsia africae ESF-5]
gi|28262506|gb|EAA26010.1| cytosine deaminase [Rickettsia sibirica 246]
gi|228022245|gb|ACP53953.1| Cytosine deaminase [Rickettsia africae ESF-5]
Length = 168
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+F+ FM AL+ ++ N V ++V + +I HAE+
Sbjct: 10 NFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 67 IAINEACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|325571324|ref|ZP_08146824.1| RibD domain protein [Enterococcus casseliflavus ATCC 12755]
gi|325155800|gb|EGC67996.1| RibD domain protein [Enterococcus casseliflavus ATCC 12755]
Length = 177
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ V GG ++ + + L+D + + + +GEG E G + V G
Sbjct: 105 NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGDYARRLTFVETKQMGE 162
Query: 349 DVCLEYIGKNL 359
L ++ K++
Sbjct: 163 LTELHFVRKSV 173
>gi|330470612|ref|YP_004408355.1| CMP/dCMP deaminase [Verrucosispora maris AB-18-032]
gi|328813583|gb|AEB47755.1| CMP/dCMP deaminase [Verrucosispora maris AB-18-032]
Length = 200
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 7 DARFMSAALRFSRWHVGLTST-----NPSVACLIV-KDGIVIGRGVTAY----GGCPHAE 56
+M AL + + + V ++ DG + G HAE
Sbjct: 50 HELWMRRALEVAVTGPAVADPSGQADDVPVGAVLYGPDGDELAIGRNERELTGDPTAHAE 109
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V AL E G VTLEPC+
Sbjct: 110 VLALRRGAERLGRWRLDGCILVVTLEPCTMC 140
>gi|312374791|gb|EFR22274.1| hypothetical protein AND_15517 [Anopheles darlingi]
Length = 193
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 39/166 (23%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV D V+G G G P
Sbjct: 26 EYFMAMAFLAAKRSK---DPSTQVGACIVNEDKRVVGLGY---NGFPTGCNDDEFPWSKT 79
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAEV A+ + + + T YV L PC + I
Sbjct: 80 SSDPLETKYLYVCHAEVNAILNKNSADVKNCTMYVALFPC-----NECAKIIIQSAIREV 134
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
V + + + G+ + +I +
Sbjct: 135 VYMSDKHAHKEHTIAAKRMFDAAGVKYTKYKPRHSRILIDFTEIDW 180
>gi|240849921|ref|YP_002971310.1| cytidine and deoxycytidylate deaminase [Bartonella grahamii
as4aup]
gi|240267044|gb|ACS50632.1| cytidine and deoxycytidylate deaminase [Bartonella grahamii
as4aup]
Length = 148
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M ++ M AL ++W V +I + +I R AY HAE
Sbjct: 1 MTLTP-----MEIALLEAQWAAKKDEV--PVGAVITRGKAIIARAGNFIKSAYDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++A+ A E YVTLEPC+
Sbjct: 54 MRAIRMACETLQSERLPDCDLYVTLEPCAMC 84
>gi|86748295|ref|YP_484791.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris
HaA2]
gi|86571323|gb|ABD05880.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris HaA2]
Length = 148
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
+ C+IV+ G VI +T HAE+ A+ EA E YVTLEPC+
Sbjct: 24 PIGCVIVRAGAVIASAGNRTLTDRDPTAHAELLAIREAARKLGSERLVDCDLYVTLEPCT 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|289619581|emb|CBI53864.1| unnamed protein product [Sordaria macrospora]
Length = 302
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFI------NSRLVDSIILYRSQIVIGEGGI--- 325
+L + G+ S+++EGG +V +S + LVDS+I+ + +G GG+
Sbjct: 206 WADVLRAIKKEGLDSVMIEGGGSVINSLLTLEQGGEQELVDSVIVTIAPTWLGAGGVLVC 265
Query: 326 -PSPLEEGYLEK---NFMCVRRDYFGSDVCL 352
P + + V G DV L
Sbjct: 266 PPRVIGKDGQPAPPVRLRDVSWHPLGEDVVL 296
>gi|229135152|ref|ZP_04263952.1| ComE operon protein 2 [Bacillus cereus BDRD-ST196]
gi|228648280|gb|EEL04315.1| ComE operon protein 2 [Bacillus cereus BDRD-ST196]
Length = 188
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + GA YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEGAEIYVTHFPCLQC 104
>gi|145347025|ref|XP_001417980.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578208|gb|ABO96273.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 173
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL------ 60
M AL +R + P C + +DG ++ G A G HAE +A+
Sbjct: 1 MRVALAQARLALDE-WEVPC-GCALARDGEIVAVGRNATNRTRNGTRHAEFEAVDALLDA 58
Query: 61 ---EEAGEEARGATAYVTLEPCSHY 82
+ A T YVT EPC
Sbjct: 59 HGGDRAACRFEDVTLYVTCEPCVMC 83
>gi|269986852|gb|EEZ93129.1| dihydrofolate reductase region [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 171
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
KK + + K+++ I+ +G +S +V GGA +A SF+ LV+ I L
Sbjct: 71 KHKIKLKKEWKNVIVTDKKPKEIIRIIEEKGYSSAMVAGGA-LATSFLKENLVNEIYLNI 129
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
+ +G+ GIP E EK ++ F D V L Y
Sbjct: 130 EPLALGK-GIPLFSNEN-FEKKLKLLQVKRFSKDEVRLHY 167
>gi|238618991|ref|YP_002913816.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus
islandicus M.16.4]
gi|238380060|gb|ACR41148.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)
pyrimidine1-reductase [Sulfolobus islandicus M.16.4]
Length = 211
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 11/212 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ + +S D + S ++ K + H +R++ DA++VG TV D+P L
Sbjct: 1 MRPYVIIFSTLSIDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T + +P+R+++ F L KI T P IV ++ + + I
Sbjct: 60 TVKY-SKNRRNPIRVVVTRSFNLDPSYKIFTT---PPSTIVYTSNYESEKVEEFSRKGVI 115
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ L + V L+VEGG + FI L D I + S + G G+
Sbjct: 116 VRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSF 174
Query: 328 PLEEGYL---EKNFMCVRRDYFG--SDVCLEY 354
+G++ + ++V L Y
Sbjct: 175 AQGDGFIGEDSPRLTLIDAKICECRNEVHLTY 206
>gi|220905293|ref|YP_002480605.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869592|gb|ACL49927.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 195
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL +R +G V ++V DG V+ A HAE+ AL A
Sbjct: 45 MDRALDRARHAAALGEV----PVGAVLVAPDGRVLAEEGNAPVALSDPTAHAEILALRRA 100
Query: 64 GE-----EARGATAYVTLEPCSHYGRSP 86
G+ G VTLEPC+ +
Sbjct: 101 GQMLGNYRLGGCVLVVTLEPCAMCAAAC 128
>gi|241203539|ref|YP_002974635.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857429|gb|ACS55096.1| CMP/dCMP deaminase zinc-binding [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 158
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ S+ + ++VKDG VI R T + HAE+ +
Sbjct: 2 ENHEPFLREAIALSKSAMANGDE--PFGSVLVKDGEVILRAENSVFTGHDMTNHAEMNLV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + G T Y + EPC+
Sbjct: 60 KLAAQHYDTAFLAGCTLYTSTEPCAMCS 87
>gi|58268162|ref|XP_571237.1| tRNA specific adenosine deaminase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113420|ref|XP_774735.1| hypothetical protein CNBF4140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257379|gb|EAL20088.1| hypothetical protein CNBF4140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227472|gb|AAW43930.1| tRNA specific adenosine deaminase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 239
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
M AL + + T+ V C+ VK G I R HAE++A++
Sbjct: 1 MREALIMAEEAL--TNDEVPVGCVFVKGGQAIARARNRTNEWRNATLHAELEAIDHLLPS 58
Query: 64 -GEEARGATAYVTLEPCSHY 82
T YVT+EPC
Sbjct: 59 HPAPLSTITLYVTVEPCVMC 78
>gi|308160868|gb|EFO63335.1| Cytosine deaminase, putative [Giardia lamblia P15]
Length = 165
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEE--A 63
M + + + V C IV DG ++ G A HAE+ AL + +
Sbjct: 1 MEECFKEASLALVEREV--PVGCAIVDSDGHILATGRNATNKTRNSTYHAELVALAQLPS 58
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G YVT+EPC +
Sbjct: 59 GINLSNCVLYVTIEPCIMCAAALSIVGLTNIIYF 92
>gi|162457300|ref|YP_001619667.1| dCMP deaminase [Sorangium cellulosum 'So ce 56']
gi|161167882|emb|CAN99187.1| dCMP deaminase [Sorangium cellulosum 'So ce 56']
Length = 135
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 25/92 (27%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------------- 53
M A + T V +IV+D ++ G + G P
Sbjct: 1 MRIAEVVASRA---TCDRKHVGAVIVRDKSILATGYNGSIRGLPHCDEDGHLIEDGHCVR 57
Query: 54 --HAEVQALEEA---GEEARGATAYVTLEPCS 80
HAE A+ +A G GAT YVT PC
Sbjct: 58 TIHAEANAIIQAARNGVRIDGATVYVTASPCW 89
>gi|228993069|ref|ZP_04152992.1| ComE operon protein 2 [Bacillus pseudomycoides DSM 12442]
gi|228999119|ref|ZP_04158701.1| ComE operon protein 2 [Bacillus mycoides Rock3-17]
gi|229006667|ref|ZP_04164301.1| ComE operon protein 2 [Bacillus mycoides Rock1-4]
gi|228754528|gb|EEM03939.1| ComE operon protein 2 [Bacillus mycoides Rock1-4]
gi|228760736|gb|EEM09700.1| ComE operon protein 2 [Bacillus mycoides Rock3-17]
gi|228766717|gb|EEM15357.1| ComE operon protein 2 [Bacillus pseudomycoides DSM 12442]
Length = 185
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGG 51
M S+D FM+ + S T T +V IV+D +I G G
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSITGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + GA YVT PC
Sbjct: 58 CYIIDNHCVRTIHAEMNALLQCAKFGAKTEGAEIYVTHFPCLQC 101
>gi|195391484|ref|XP_002054390.1| GJ24425 [Drosophila virilis]
gi|194152476|gb|EDW67910.1| GJ24425 [Drosophila virilis]
Length = 160
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 19/124 (15%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ V + VI RG HAE +
Sbjct: 4 FMEDALVEARRARDAGEV----PVGCVFVHNDKVIARGGNEVNVHRNATRHAEFICI--- 56
Query: 64 GEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT Y + + + + V+ G +
Sbjct: 57 -----DATLAYCREKRLPARQVFSEISVVVTVEPCIMCSAALHTLAVKEIIYGCENDRFG 111
Query: 123 GIIV 126
G V
Sbjct: 112 GKTV 115
>gi|167648591|ref|YP_001686254.1| CMP/dCMP deaminase zinc-binding [Caulobacter sp. K31]
gi|167351021|gb|ABZ73756.1| CMP/dCMP deaminase zinc-binding [Caulobacter sp. K31]
Length = 146
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYGG----CPHAEVQALEE 62
M+ AL +R G T V +I+ G ++ R G HAE+ A+
Sbjct: 1 MAVALDEARAAAQAGET----PVGAVILDPASGEILARAGNGPIGAHDPTAHAEISAIRL 56
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A T VTLEPC+
Sbjct: 57 AAAKLGNYRLTDLTLVVTLEPCAMC 81
>gi|313675037|ref|YP_004053033.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
gi|312941735|gb|ADR20925.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
Length = 160
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 30/109 (27%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M FD FM A+ ++ + V ++ K+ +I G
Sbjct: 1 MEKPQFDDIFMELAVNLAKRSHCIKRH---VGAVLTKETRIISIGYNGPPAGTHNCDEEF 57
Query: 54 -----------------HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE A+ A + +T YVTL PC
Sbjct: 58 PGKGCGLDSKGSCMLAIHAEQNAIMYAVKNNASVENSTLYVTLSPCLSC 106
>gi|311069161|ref|YP_003974084.1| hypothetical protein BATR1942_11110 [Bacillus atrophaeus 1942]
gi|310869678|gb|ADP33153.1| hypothetical protein BATR1942_11110 [Bacillus atrophaeus 1942]
Length = 189
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S++ FM+ + + T SV IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 48 ------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CFLIDDHCARTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQC 101
>gi|193215780|ref|YP_001996979.1| CMP/dCMP deaminase [Chloroherpeton thalassium ATCC 35110]
gi|193089257|gb|ACF14532.1| CMP/dCMP deaminase zinc-binding [Chloroherpeton thalassium ATCC
35110]
Length = 179
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP----------- 53
+D FMS A S+ T + +IV+D ++ G G P
Sbjct: 26 WDEYFMSVAHLISQRA---TCKRAHIGAVIVRDNNILATGYNGAPSGLPHCDDDNCLIYT 82
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + A YVT PC +
Sbjct: 83 STHPDGTIEQNCMNTIHAEMNAIIQAAKHGVSIKDADIYVTASPCINC 130
>gi|291397092|ref|XP_002714901.1| PREDICTED: deaminase domain containing 1-like [Oryctolagus
cuniculus]
Length = 192
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+R ++ + V CL+V + V+G+G HAE+ A+++
Sbjct: 24 EKWMEEAMRMAKEALENIEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 81
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 82 LDWCRRSGKSSAEVFEHTVLYVTVEPCIMC 111
>gi|194291404|ref|YP_002007311.1| guanine deaminase; cytidine and deoxycytidylate deaminase family
[Cupriavidus taiwanensis LMG 19424]
gi|193225308|emb|CAQ71250.1| Guanine deaminase; cytidine and deoxycytidylate deaminase family
[Cupriavidus taiwanensis LMG 19424]
Length = 155
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M + ++ ++R + +V +T P ++VKDG V+ R V HAE
Sbjct: 1 MSTT---EAYLLDSIRLAMENVRERNTWP-FGAVVVKDGTVLARAVNEVDATCDPSAHAE 56
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHY 82
+QA+ A + G T Y + PC
Sbjct: 57 MQAVRAASRALGKPDLSGCTVYASGYPCPMC 87
>gi|29566057|ref|NP_817627.1| gp38 [Mycobacterium phage Bxz2]
gi|29424782|gb|AAN01792.1| gp38 [Mycobacterium phage Bxz2]
gi|323126199|gb|ADX30664.1| gp38 [Mycobacterium phage Wonder]
Length = 127
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 34/126 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
++D F+ A + S V ++VKD V G G P
Sbjct: 4 TWDEYFLEIAKTVAIRSDCERS---QVGAVVVKDRRVRATGYNGAPAGRPGCSTCPRRTS 60
Query: 54 -------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
HAE AL E+ GAT Y+T PC + A +
Sbjct: 61 GAIPGVSDYDSGVGRCVAVHAEANALLYCDREDLIGATLYITRAPCDGCRKLIDAAGIVN 120
Query: 94 ECGIRR 99
+
Sbjct: 121 VIYPQE 126
>gi|317128288|ref|YP_004094570.1| ComE operon protein 2 [Bacillus cellulosilyticus DSM 2522]
gi|315473236|gb|ADU29839.1| ComE operon protein 2 [Bacillus cellulosilyticus DSM 2522]
Length = 188
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S+ FM+ + + T + V IV+D +I G
Sbjct: 1 MDRISWHQYFMAQSHLLALRS---TCSRLMVGATIVRDKRIIAGGYNGAISGGVHCIDEG 57
Query: 48 ------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G G+ YVT PC +
Sbjct: 58 CYVIDDHCVRTIHAEVNALLQCAKFGVATEGSEIYVTHFPCLNC 101
>gi|229086897|ref|ZP_04219056.1| ComE operon protein 2 [Bacillus cereus Rock3-44]
gi|228696407|gb|EEL49233.1| ComE operon protein 2 [Bacillus cereus Rock3-44]
Length = 185
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEDAEIYVTHFPCLQC 101
>gi|188582573|ref|YP_001926018.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
gi|179346071|gb|ACB81483.1| CMP/dCMP deaminase zinc-binding [Methylobacterium populi BJ001]
Length = 153
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
++ A L + G +IV++G V+ R HAE+
Sbjct: 2 PDHESYLREATELALANVAEGGR----PYGAVIVREGEVVARAANRIHATNDPSDHAEMV 57
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYG 83
A+ A + Y + PC
Sbjct: 58 AIRAASQRLGRPKLDDCIVYASGRPCPMCH 87
>gi|264680472|ref|YP_003280382.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
gi|262210988|gb|ACY35086.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
Length = 166
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAE 56
++ D R++ A+ + N LIV DG V+ R G HAE
Sbjct: 8 TLNDSDGRYLREAIALADTARER--GNRPFGALIVAADGRVLARASNANGESGDCTAHAE 65
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ A+ A E AT Y + EPC
Sbjct: 66 LSAIRLASPLHSRGELAVATLYSSAEPCVMC 96
>gi|209881015|ref|XP_002141946.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
muris RN66]
gi|209557552|gb|EEA07597.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
muris RN66]
Length = 380
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 38/156 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
S+D FM A S+ + V ++VK+ +I G
Sbjct: 229 SWDEYFMKLAWLTSKRSNCIRRK---VGSVLVKNNRIISTGYNGTPTATTNCFEGGCIRC 285
Query: 49 -----YGGCP-------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIEC 95
G HAE L AG+ + + YVT PC CA+ II+C
Sbjct: 286 TNINVINGTNLEYCNCIHAESNVLFYAGKDKCEDSILYVTCLPCL------TCAKHIIQC 339
Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
GI +V+ + L + V +
Sbjct: 340 GIIKVIYSTKYLMDENRPTSIDILHNSNVEVIQFHN 375
>gi|293335013|ref|NP_001169897.1| hypothetical protein LOC100383791 [Zea mays]
gi|224032231|gb|ACN35191.1| unknown [Zea mays]
Length = 180
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK---DGIVIGRGVTA----YGGCPHAEVQALE 61
R ++ A+ + V ++V D V+ + HAEV A+
Sbjct: 24 RLIAKAVDEAYRAVECDGGGYPFGAVVVHGGGDDEVVSSSHNSVRKDADPSAHAEVTAIR 83
Query: 62 EAGEE-----ARGATAYVTLEPCSHY 82
+A ++ G Y + EPC
Sbjct: 84 QACKKLGKTSLAGCEIYTSCEPCPMC 109
>gi|193212376|ref|YP_001998329.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
gi|193085853|gb|ACF11129.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327]
Length = 173
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+ FM A SR + +IV+D ++ G
Sbjct: 27 WHEYFMCVAHLISRRATCTRGH---IGAVIVRDNNILSTGYNGAPSGLPHCNETNCKIYR 83
Query: 47 -TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
T G HAE+ A+ +A G + A Y+T PC H
Sbjct: 84 STHPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 131
>gi|160890970|ref|ZP_02071973.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
gi|317481497|ref|ZP_07940562.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides sp. 4_1_36]
gi|156859191|gb|EDO52622.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492]
gi|316902343|gb|EFV24232.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides sp. 4_1_36]
Length = 153
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ V LIVKD ++I G G P
Sbjct: 12 ALDRRYIRMASIWAENSYCQRR---QVGALIVKDKMIISDGY---NGTPSGFENVCEDEN 65
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A + + + GAT YVT PC
Sbjct: 66 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIECS 106
>gi|321312043|ref|YP_004204330.1| DNA transport protein [Bacillus subtilis BSn5]
gi|320018317|gb|ADV93303.1| putative enzyme associated to DNA transport (competence) [Bacillus
subtilis BSn5]
Length = 189
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S++ FM+ + + T SV IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 48 ------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQC 101
>gi|326203244|ref|ZP_08193109.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
gi|325986502|gb|EGD47333.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
Length = 145
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + T V +IVKD ++ G
Sbjct: 4 SWDEYFMQI-VEL--IKTRSTCIRRQVGAVIVKDKRILATGYNGAPVGCKHCSEVGCMRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT YVT +PC
Sbjct: 61 KLNIPSGQRHELCRAIHAEQNAIVQAAYSGTSVSGATLYVTNQPCVLC 108
>gi|125624972|ref|YP_001033455.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493780|emb|CAL98772.1| conserved hypothetical protein; possible dihydrofolate reductase
family protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071772|gb|ADJ61172.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 173
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG V F+ + VD + + + +++G G+P Y EK + +G
Sbjct: 105 KNIWVVGGGEVIKLFLENHWVDELQVTIAPVLLG-DGVPLFPSGNYEEK-LQLIDTRTYG 162
Query: 348 SDVCLEYIGKN 358
V L Y+ K
Sbjct: 163 QFVELHYLVKK 173
>gi|324997637|ref|ZP_08118749.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudonocardia
sp. P1]
Length = 254
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ + GG A+ + LVD + L + ++ G V
Sbjct: 177 RGLRRINCMGGPALFGGLAEAGLVDELRLTLAPFLVSGEAGRIARGAGMDPARLELVSVV 236
Query: 345 YFGSDVCLEYIGK 357
+ + Y +
Sbjct: 237 TGDDTLLVRYRVR 249
>gi|253743085|gb|EES99615.1| Cytosine deaminase, putative [Giardia intestinalis ATCC 50581]
Length = 163
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----HAEVQALEEAG- 64
M + + V C IV G ++ G A HAE+ AL +
Sbjct: 1 MEECFEEANLALAEREV--PVGCAIVDGSGRILATGRNATNRTRNSMCHAEMVALAQVPL 58
Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G YVT+EPC +
Sbjct: 59 DADLTGCVLYVTIEPCIMCAAALSIVGLTNVVYF 92
>gi|16079612|ref|NP_390436.1| hypothetical protein BSU25580 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310483|ref|ZP_03592330.1| required for DNA binding and uptake (competence) [Bacillus subtilis
subsp. subtilis str. 168]
gi|221314807|ref|ZP_03596612.1| required for DNA binding and uptake (competence) [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221319729|ref|ZP_03601023.1| required for DNA binding and uptake (competence) [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221324007|ref|ZP_03605301.1| required for DNA binding and uptake (competence) [Bacillus subtilis
subsp. subtilis str. SMY]
gi|418361|sp|P32393|COMEB_BACSU RecName: Full=ComE operon protein 2
gi|289261|gb|AAC36906.1| comE ORF2 [Bacillus subtilis]
gi|1303797|dbj|BAA12453.1| ComEB [Bacillus subtilis]
gi|2635004|emb|CAB14500.1| putative enzyme associated to DNA transport (competence) [Bacillus
subtilis subsp. subtilis str. 168]
gi|291485008|dbj|BAI86083.1| operon protein ComEB [Bacillus subtilis subsp. natto BEST195]
Length = 189
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S++ FM+ + + T SV IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 48 ------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQC 101
>gi|315500440|ref|YP_004089243.1| cmp/dcmp deaminase zinc-binding protein [Asticcacaulis
excentricus CB 48]
gi|315418452|gb|ADU15092.1| CMP/dCMP deaminase zinc-binding protein [Asticcacaulis
excentricus CB 48]
Length = 162
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D M AL + G + LI +I R A HAE+
Sbjct: 3 DKTLMRLALDEAEKAAQAGEV----PIGALIYDPSSKTIIARAKNAPIKLNDPSAHAEIL 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL AG+ YVTLEPC
Sbjct: 59 ALRAAGQVVGNYRLTDLWIYVTLEPCVMC 87
>gi|157829120|ref|YP_001495362.1| cytosine deaminase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933844|ref|YP_001650633.1| tRNA-specific adenosine deaminase [Rickettsia rickettsii str.
Iowa]
gi|157801601|gb|ABV76854.1| cytosine deaminase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908931|gb|ABY73227.1| tRNA-specific adenosine deaminase [Rickettsia rickettsii str.
Iowa]
Length = 168
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+F+ FM AL+ ++ N V ++V + +I HAE+
Sbjct: 10 NFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLNQKIIASTHNNTEEKNNALYHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 67 IAINEACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|330931309|ref|XP_003303355.1| hypothetical protein PTT_15525 [Pyrenophora teres f. teres 0-1]
gi|311320718|gb|EFQ88558.1| hypothetical protein PTT_15525 [Pyrenophora teres f. teres 0-1]
Length = 195
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
P + ++M AL ++ S N V L+V G ++ RG T G HAE
Sbjct: 28 PDPNDHLKYMRLALDQAQESPPKPS-NFRVGALLVDADTGDILSRGYTLECEGNTHAEQC 86
Query: 59 ALEE-----------AGEEA-RGATAYVTLEPCS 80
L + GE Y T+EPC+
Sbjct: 87 CLLKFAQAHDLPEERVGEALPPNTVIYTTMEPCN 120
>gi|119871899|ref|YP_929906.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
islandicum DSM 4184]
gi|119673307|gb|ABL87563.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Pyrobaculum islandicum DSM 4184]
Length = 217
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 10/214 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L A + D I S ++ ++H +RA DAI+VG T + D+P L
Sbjct: 1 MRPYVYLVAATTIDGRIASYTGYSR-LSCPYDLKRLHSIRASVDAIIVGANTAIVDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
T R + R+++D + L +I ++ V + + ++
Sbjct: 60 TVRYVEGKNPM--RVLIDGALRAPLTLRIFDSSAPTVVFTTHKAPQDKIHELQKRGVKIY 117
Query: 268 IYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
I +L L +GV +L+EGG F++ LVD IIL + V G
Sbjct: 118 ITEGETVDPAYVLDTLYKQGVRKVLLEGGGRTNWEFLSKCLVDEIILTVTPYVFGRGVSL 177
Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
EG + E+ ++ G +V L+Y
Sbjct: 178 VEGAGFATTEDTPFALTLHSIKLCECGQEVVLKY 211
>gi|169627373|ref|YP_001701022.1| cytidine/deoxycytidylate deaminase family protein [Mycobacterium
abscessus ATCC 19977]
gi|169239340|emb|CAM60368.1| Cytidine/deoxycytidylate deaminase family protein [Mycobacterium
abscessus]
Length = 152
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHA 55
M D + AAL +R S + + +I DG + R A HA
Sbjct: 1 MTFPD-DEALIRAALVAAREAG---SQDVPIGAVIYAADGTELARAANARERLGDPTAHA 56
Query: 56 EVQALEEA------GEEARGATAYVTLEPCSHY 82
EV AL A G GAT VT+EPC+
Sbjct: 57 EVLALRAAAAKHGDGWRLEGATLAVTVEPCTMC 89
>gi|50843399|ref|YP_056626.1| deoxycytidylate deaminase [Propionibacterium acnes KPA171202]
gi|50841001|gb|AAT83668.1| deoxycytidylate deaminase [Propionibacterium acnes KPA171202]
gi|313813655|gb|EFS51369.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL025PA1]
gi|315107956|gb|EFT79932.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Propionibacterium acnes HL030PA1]
gi|327333108|gb|EGE74835.1| deoxycytidylate deaminase [Propionibacterium acnes HL097PA1]
Length = 152
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 39/132 (29%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP-------- 53
V +D F+ A S V L+V + +I G G P
Sbjct: 11 VPDWDQYFLGIAEAVSARAKCTRR---RVGALLVHEHRIIATGYNGAAPGRPDCLEGACP 67
Query: 54 ---------------------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
HAE+ AL A + G+TAYVT +PCS ++
Sbjct: 68 RGRLDYGEVPAFSDYDVPGSPGFCIAIHAEMNALLFATRDTAGSTAYVTDKPCSGCRKAL 127
Query: 87 PCAQFIIECGIR 98
A +
Sbjct: 128 AAAGVVRAVWPD 139
>gi|159128508|gb|EDP53623.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
fumigatus A1163]
Length = 280
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IP 326
D LL L G+ S+++EGGA + +S + L+DS+I+ + +G+GG +
Sbjct: 183 RRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQNLIDSVIVTIAPTWLGQGGVVV 242
Query: 327 SPLEEGYL------EKNFMCVRRDYFGSDVCL 352
SP V+ FG DV L
Sbjct: 243 SPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274
>gi|70985705|ref|XP_748358.1| riboflavin biosynthesis protein Rib7 [Aspergillus fumigatus Af293]
gi|66845987|gb|EAL86320.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
fumigatus Af293]
Length = 280
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IP 326
D LL L G+ S+++EGGA + +S + L+DS+I+ + +G+GG +
Sbjct: 183 RRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQNLIDSVIVTIAPTWLGQGGVVV 242
Query: 327 SPLEEGYL------EKNFMCVRRDYFGSDVCL 352
SP V+ FG DV L
Sbjct: 243 SPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274
>gi|85108193|ref|XP_962526.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
gi|28924134|gb|EAA33290.1| hypothetical protein NCU08313 [Neurospora crassa OR74A]
Length = 321
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI------NSRLVDSIILYRSQIVIGEGGI 325
+L + G+ S+++EGG +V +S + LVDS+I+ + +G GG+
Sbjct: 222 SFAWVDVLRTIKEEGLDSVMIEGGGSVINSLLSLEQAGEQELVDSVIVTIAPTWLGAGGV 281
Query: 326 ----PSPLEEGYLEK---NFMCVRRDYFGSDVCL 352
P + V G DV L
Sbjct: 282 LVCPPRAVGRDGQPAPPVRLRDVSWQPLGEDVVL 315
>gi|313844171|ref|YP_004061834.1| hypothetical protein OlV1_202 [Ostreococcus lucimarinus virus
OlV1]
gi|312599556|gb|ADQ91578.1| hypothetical protein OlV1_202 [Ostreococcus lucimarinus virus
OlV1]
Length = 136
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S++ FM A + N V C++VK+ +I G + G
Sbjct: 3 SRISWNEYFMKTA-ELASVRSPCDRLN--VGCVLVKNNRLISMGYNGFLGGSNHTSIVRD 59
Query: 54 -------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G G AY+T PC +
Sbjct: 60 GHEQATIHAEINAVTDAAKRGVSIDGTEAYITHYPCLNC 98
>gi|296416059|ref|XP_002837698.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633581|emb|CAZ81889.1| unnamed protein product [Tuber melanosporum]
Length = 334
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 38/111 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S+DA F+ A + + V C++V+ VI G G P
Sbjct: 179 SWDAYFIQLASLAACRSNCMKR---RVGCVLVRGKRVISTGY---NGTPRNLVNCNEGGC 232
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E GAT Y PC
Sbjct: 233 KRCNNGTEGGVGLMTCLCIHAEENALLEAGRERVGDGATLYCDTCPCLTCS 283
>gi|145229091|ref|XP_001388854.1| cytosine deaminase [Aspergillus niger CBS 513.88]
gi|134054953|emb|CAK36962.1| unnamed protein product [Aspergillus niger]
Length = 148
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAGEEA- 67
A+ ++ + +V KDG ++GRG G P HAE+ ALE +G
Sbjct: 10 AVEEAKQGAAEGGV--PIGACLVSKDGKILGRGHNMRVQKGSPVLHAEMSALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|189190780|ref|XP_001931729.1| cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973335|gb|EDU40834.1| cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 195
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
P + ++M AL ++ S N V L+V G ++ RG T G HAE
Sbjct: 28 PDPNDHLQYMRLALDQAQESPPKPS-NFRVGALLVDADTGDILSRGYTLECEGNTHAEQC 86
Query: 59 ALEE-----------AGEEA-RGATAYVTLEPCS 80
L + GE Y T+EPC+
Sbjct: 87 CLLKFAQEHGLPEERVGEALPSNTVIYTTMEPCN 120
>gi|323490043|ref|ZP_08095264.1| ComE operon protein 2 [Planococcus donghaensis MPA1U2]
gi|323396339|gb|EGA89164.1| ComE operon protein 2 [Planococcus donghaensis MPA1U2]
Length = 190
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + + T T +V IV+D ++ G + G
Sbjct: 1 MKRITWDQFFMAQSHLLALRS---TCTRLAVGATIVRDRRIMAGGYNGSISGGDHCIDKG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GA YV+ PC
Sbjct: 58 CYVVDGHCVRTIHAEMNALLQCSKYGVSVNGADMYVSHFPCLQC 101
>gi|312139475|ref|YP_004006811.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase ribd [Rhodococcus
equi 103S]
gi|325672635|ref|ZP_08152331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi
ATCC 33707]
gi|311888814|emb|CBH48126.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
[Rhodococcus equi 103S]
gi|325556512|gb|EGD26178.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi
ATCC 33707]
Length = 262
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ +L EGG + + I +VD + L S +++G
Sbjct: 189 RGLRRVLCEGGPGLFGTLIADGVVDELCLTTSPVLVGGAAGRIAHSSIASPTAMSRAHV- 247
Query: 345 YFGSD--VCLEYIG 356
D + ++
Sbjct: 248 LADDDGTLLTRWVR 261
>gi|239816940|ref|YP_002945850.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
gi|239803517|gb|ACS20584.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
Length = 176
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 2 PVSSFDARFMSAAL--RFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPH 54
+ D R++ A+ + G N +IV G V+ + H
Sbjct: 17 TLDERDGRYLRKAIVWSHAARRRG----NRPFGSVIVSAAGEVLAEAANSNTESGDCTAH 72
Query: 55 AEVQALEE-AG-----EEARGATAYVTLEPCSHY 82
AE+ AL AG EE GAT Y + EPC
Sbjct: 73 AEMNALRALAGRGLTREELAGATIYASGEPCVMC 106
>gi|294656404|ref|XP_458666.2| DEHA2D04598p [Debaryomyces hansenii CBS767]
gi|199431447|emb|CAG86805.2| DEHA2D04598p [Debaryomyces hansenii]
Length = 354
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 43/116 (37%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D+ FM A + + V C++V+ V+ G G P
Sbjct: 199 TWDSYFMRLADLAALRSNCMKR---RVGCVVVRGNRVMATGY---NGTPRNLTNCNEGGC 252
Query: 54 -------------------HAEVQALEEAGEE-------ARGATAYVTLEPCSHYG 83
HAE AL EAG + + Y PC
Sbjct: 253 SRCNQGQGSGAALSTCLCLHAEENALLEAGRDRITGGQTGENSVLYCNTCPCLTCS 308
>gi|114770250|ref|ZP_01447788.1| cytosine deaminase [alpha proteobacterium HTCC2255]
gi|114549087|gb|EAU51970.1| cytosine deaminase [alpha proteobacterium HTCC2255]
Length = 147
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
++ D R + A ++ + ++ + ++ +G G P H E+
Sbjct: 1 MNDDDKRLLRIAYNEAKLGFEEGG--CPIGSVLARGAEIVSQGRNQRVQKGDPIAHGEMD 58
Query: 59 ALEEAGEE--ARGATAYVTLEPCSHY 82
AL +AG + R T Y +L PC
Sbjct: 59 ALRKAGRQKTYRDTTLYTSLSPCMMC 84
>gi|67481305|ref|XP_656002.1| cytidine/deoxycytidylate deaminase family protein [Entamoeba
histolytica HM-1:IMSS]
gi|56473174|gb|EAL50617.1| cytidine/deoxycytidylate deaminase family protein [Entamoeba
histolytica HM-1:IMSS]
Length = 166
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQ 58
D +M+ AL+ + + G V C+++ G ++ +G G HAE+
Sbjct: 3 DDKYYMNEALKMGQEALNIGEV----PVGCVVINSKGEIVAKGRNHTKEFQDGTQHAEIV 58
Query: 59 ALEEAGEE---ARGATAYVTLEPCSHY 82
+ + E+ YVT EPC
Sbjct: 59 CINQLVEKHVHLSECILYVTCEPCIMC 85
>gi|261188113|ref|XP_002620473.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
[Ajellomyces dermatitidis SLH14081]
gi|239593348|gb|EEQ75929.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
[Ajellomyces dermatitidis SLH14081]
gi|239609090|gb|EEQ86077.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
[Ajellomyces dermatitidis ER-3]
Length = 187
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE----- 66
+ G T V C++V + VIG G+ + G HAE A+EE
Sbjct: 6 EEA-LASGET----PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRSHPRSI 60
Query: 67 ARGATAYVTLEPCSHY 82
R YVT+EPC
Sbjct: 61 FRETDLYVTVEPCIMC 76
>gi|163853666|ref|YP_001641709.1| deaminase-reductase domain-containing protein [Methylobacterium
extorquens PA1]
gi|163665271|gb|ABY32638.1| bifunctional deaminase-reductase domain protein [Methylobacterium
extorquens PA1]
Length = 238
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL------- 329
L + G+ LLVEGG + S + +RLVD + L + V G G P+
Sbjct: 147 ALAKLKRLFGIERLLVEGGGRINGSMLKARLVDELSLLLAPAVDGVLGTPALFDFEGGEG 206
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + + F V L Y +
Sbjct: 207 DSMGSRRRLTRTACEPFDDGTVWLRYRIE 235
>gi|115725150|ref|XP_781375.2| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
purpuratus]
gi|115958553|ref|XP_001190940.1| PREDICTED: similar to MGC81193 protein [Strongylocentrotus
purpuratus]
Length = 205
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP--------- 53
+++ FMS A ++ + V IV + ++G G GC
Sbjct: 66 AWEDYFMSVAFLSAQRSK---DPSSQVGACIVNEEKKIVGIGYNGMPNGCNDDVLPWSRD 122
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 123 SEDWLETKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 165
>gi|240171878|ref|ZP_04750537.1| deaminase [Mycobacterium kansasii ATCC 12478]
Length = 166
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IVKDG ++ HAE+ A+ EA
Sbjct: 4 FAQRTIDLARQNVAEGGR--PFATVIVKDGEILAESANKVAQTNDPTAHAEILAIREACT 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G T YV PC
Sbjct: 62 KLGTEHLVGTTIYVLAHPCPMC 83
>gi|218532085|ref|YP_002422901.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
chloromethanicum CM4]
gi|218524388|gb|ACK84973.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
chloromethanicum CM4]
Length = 147
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +V+DG V+ T HAE+ A+ A E G YVTLEPC
Sbjct: 22 PVGAAVVRDGAVLAVAGNRPRTLCDPTAHAEILAIRAACAALSDERLTGCDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|219849114|ref|YP_002463547.1| bifunctional deaminase-reductase domain-containing protein
[Chloroflexus aggregans DSM 9485]
gi|219543373|gb|ACL25111.1| bifunctional deaminase-reductase domain protein [Chloroflexus
aggregans DSM 9485]
Length = 289
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+I + + + + + T+ G+ +LL EGG S +
Sbjct: 153 LITTAQGAEHARSRHPHLTCLVGTDGQLDLTAAMTTLRQQYGIRTLLSEGGGRTYGSLLA 212
Query: 305 SRLVDSIILYRSQIVIGE---------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+L+D + L S I++G G + + DV
Sbjct: 213 HQLIDEVFLTISPIIVGNPAPPTPPRPGLVEGVAFAPQDPPRLRLISLRRV-DDVLF 268
>gi|307102708|gb|EFN50977.1| hypothetical protein CHLNCDRAFT_33285 [Chlorella variabilis]
Length = 167
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQAL 60
+M A+ S T LIV G V+G G H E++A+
Sbjct: 7 HETYMKRAIELSAKAGLEEQTGGCFGALIVDKETGEVVGEGYNKVILNNDPTWHGEMEAI 66
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EA + G Y + +PC
Sbjct: 67 REACKARGSPHIPGTVCYTSAQPCPMC 93
>gi|194900476|ref|XP_001979783.1| GG22115 [Drosophila erecta]
gi|190651486|gb|EDV48741.1| GG22115 [Drosophila erecta]
Length = 160
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
FM AL +R G V C+ V G V+ RG HAE ++
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59
Query: 63 ----------AGEEARGATAYVTLEPCSHYG 83
A + T VT+EPC
Sbjct: 60 LASCRERRLPARQLFSEITVVVTVEPCIMCS 90
>gi|50955356|ref|YP_062644.1| hypothetical protein Lxx17960 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951838|gb|AAT89539.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leifsonia
xyli subsp. xyli str. CTCB07]
Length = 248
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-IGEGGIPSPLEEGYLEK 336
L+ L RG+ + EGG + + +VD + L S + G +
Sbjct: 164 LVRELAARGLRRIHCEGGPRLFGDLLAGGVVDELCLTLSPRLEAGSATRIAVGAAPIEPV 223
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
+ + L Y+
Sbjct: 224 GMRLAHVLHSEDTLLLRYVR 243
>gi|56551192|ref|YP_162031.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753167|ref|YP_003226060.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|9931341|gb|AAG02151.1|AF212041_7 nitrogen fixation protein [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542766|gb|AAV88920.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552530|gb|ACV75476.1| CMP/dCMP deaminase zinc-binding protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 160
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEA 63
M AL + G V ++ G +I A HAEV+AL +A
Sbjct: 17 MRQALLQAESAAHQGEV----PVGAVVTFKGKIIAVAGNAMQPPFIDPTGHAEVRALRQA 72
Query: 64 -----GEEARGATAYVTLEPCSHY 82
+VTLEPC+
Sbjct: 73 ASVLGSSRLDQCDLWVTLEPCAMC 96
>gi|160901517|ref|YP_001567098.1| dihydrofolate reductase region [Petrotoga mobilis SJ95]
gi|160359161|gb|ABX30775.1| dihydrofolate reductase region [Petrotoga mobilis SJ95]
Length = 176
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+P K +Y + LL L +G + + GG+ + F+ L+D I
Sbjct: 69 NPEKYKEVELKYDKYLYFTDNPPEILLDKLEKKGYPEVALIGGSTINSLFLEKNLIDEIF 128
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
L ++I G S + + NF D + L Y+ +
Sbjct: 129 LTIEPVII--EGDLSIFKYVNDKYNFKLTDFKKLNEDTILLHYLKTD 173
>gi|145224494|ref|YP_001135172.1| hypothetical protein Mflv_3913 [Mycobacterium gilvum PYR-GCK]
gi|315444825|ref|YP_004077704.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
Spyr1]
gi|145216980|gb|ABP46384.1| bifunctional deaminase-reductase domain protein [Mycobacterium
gilvum PYR-GCK]
gi|315263128|gb|ADT99869.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
Spyr1]
Length = 257
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
RG+ +L EGG + F + LVD + + + +++G G +G + +
Sbjct: 181 AERGLRRVLTEGGPGILGMFTDDDLVDELCVTVAPLLLGGGPGRIVTGDGEVRSGMVLGH 240
Query: 343 RDYFGSD-VCLEYIGKN 358
G + L Y+
Sbjct: 241 ALTDGDGYLYLRYLRDR 257
>gi|119386848|ref|YP_917903.1| CMP/dCMP deaminase, zinc-binding [Paracoccus denitrificans
PD1222]
gi|119377443|gb|ABL72207.1| CMP/dCMP deaminase, zinc-binding protein [Paracoccus
denitrificans PD1222]
Length = 149
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEE 62
M AL +R G V ++V DG V+ R HAE+ A+
Sbjct: 6 HMPTALDEARAAARRGEV----PVGAVLVGADGAVLARAGNRTREMRDPTAHAEILAIRA 61
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A E GA +VTLEPC
Sbjct: 62 ACAHLGSERLPGARLWVTLEPCPMC 86
>gi|322710269|gb|EFZ01844.1| putative dCMP deaminase [Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 39/115 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM+ A ++ + V C++V ++ VI G G P
Sbjct: 224 WDTYFMALASLAAQRSNCMKR---RVGCVLVGRERRVISTGY---NGTPRGIRNCADGGC 277
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPP 87
HAE AL EAG E G+ Y PC
Sbjct: 278 PRCNEGNSSGVGLATCLCIHAEENALLEAGRERIRDGSVLYCDTCPCLTCSIKIC 332
>gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Candidatus Liberibacter asiaticus str. psy62]
gi|254547815|gb|ACT56831.2| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Candidatus Liberibacter asiaticus str. psy62]
Length = 149
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE--- 62
FMS AL ++ V + V + +I R HAE+ A+
Sbjct: 7 FMSCALEEAQNAALRNEI--PVGAVAVLNNKIISRAGNRNRELKDVTAHAEILAIRMGCR 64
Query: 63 --AGEEARGATAYVTLEPCSHY 82
+ E YVTLEPC+
Sbjct: 65 ILSQEILPEVDLYVTLEPCTMC 86
>gi|195501916|ref|XP_002098000.1| GE10118 [Drosophila yakuba]
gi|194184101|gb|EDW97712.1| GE10118 [Drosophila yakuba]
Length = 160
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
FM AL +R G V C+ V G V+ RG HAE ++
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59
Query: 63 ----------AGEEARGATAYVTLEPCSHYG 83
A + T VT+EPC
Sbjct: 60 LASCRERRLPARQLFSEITVVVTVEPCIMCS 90
>gi|118472351|ref|YP_887118.1| hypothetical protein MSMEG_2787 [Mycobacterium smegmatis str. MC2
155]
gi|118173638|gb|ABK74534.1| putative riboflavin biosynthesis protein RibD [Mycobacterium
smegmatis str. MC2 155]
Length = 260
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
IL R + +L EGG ++ I L+D + L + +++G G P +
Sbjct: 182 QILAERKLFRVLTEGGPSLLGLLIEHDLLDELCLTIAPVLVGG-GAPRIAAGIGQAR--T 238
Query: 340 CVRRDYFGSD----VCLEYIG 356
+R + +D + Y+
Sbjct: 239 RMRVSHLLTDDEGYLYTRYVR 259
>gi|281492558|ref|YP_003354538.1| dihydrofolate reductase family protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376222|gb|ADA65713.1| Dihydrofolate reductase family protein [Lactococcus lactis subsp.
lactis KF147]
Length = 173
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG V F+ + VD + + + +++G GIP Y EK + +G
Sbjct: 105 KNIWVVGGGEVIKLFLENHWVDELQVTIAPVLLG-DGIPLFPSGNYKEK-LQLIDTKTYG 162
Query: 348 SDVCLEYIGKN 358
V L Y+ K
Sbjct: 163 QFVELHYLVKK 173
>gi|209732624|gb|ACI67181.1| Deoxycytidylate deaminase [Salmo salar]
Length = 195
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 34 EYFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWARSADD 90
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 91 RLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 130
>gi|23099435|ref|NP_692901.1| late competence protein [Oceanobacillus iheyensis HTE831]
gi|22777664|dbj|BAC13936.1| late competence protein (DNA binding and uptake) [Oceanobacillus
iheyensis HTE831]
Length = 186
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 32/104 (30%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M S+D FM+ + S V IV+D +I G
Sbjct: 1 MERISWDQYFMAQSHLLSLRSTCTRLE---VGATIVRDKRIIAGGYNGSVTGSVHCTDEG 57
Query: 49 ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE AL + G GA YVT PC
Sbjct: 58 CYVIDGHCVRTVHAEANALLQCAKFGVPTEGADVYVTHFPCLQC 101
>gi|317484775|ref|ZP_07943674.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
gi|316923982|gb|EFV45169.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
Length = 165
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 32/127 (25%), Gaps = 33/127 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M ++ FM+ A + T V + VKD ++ G
Sbjct: 1 MSRVAWPDYFMNIAHLVAERS---TCLRRRVGAVAVKDKRILATGYNGAPSKVAHCLDIG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
HAE + +A G GA Y T +PC +
Sbjct: 58 CLREQLGVPSGQRHEICRGLHAEQNVIIQAAVHGISLAGAEVYCTHQPCLICSKMLINCG 117
Query: 91 FIIECGI 97
Sbjct: 118 ITKIWYA 124
>gi|254563600|ref|YP_003070695.1| deaminase reductase domain-containing protein [Methylobacterium
extorquens DM4]
gi|254270878|emb|CAX26883.1| putative deaminase reductase domain-containing protein
[Methylobacterium extorquens DM4]
Length = 238
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL------- 329
L + G+ LLVEGG + S + + LVD + L + V G G P+
Sbjct: 147 ALAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLLAPAVDGVLGTPALFDFEGGEG 206
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + F V L Y +
Sbjct: 207 DSMGSRRRLTRTACAPFDDGTVWLRYRIE 235
>gi|238859563|ref|NP_001154984.1| deoxycytidylate deaminase isoform 2 [Rattus norvegicus]
Length = 173
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 23 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 76
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 77 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 119
>gi|226288491|gb|EEH44003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
brasiliensis Pb18]
Length = 665
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ +TL A S D + + ++G SK H LR++ DAIL+G+GT
Sbjct: 383 PRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTA 442
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+AD+P L CR + P II+DP + S D + + AP II
Sbjct: 443 MADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWII 502
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+ S+++EGGA V
Sbjct: 503 VSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVI 562
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G GG+ + + +R G D
Sbjct: 563 SELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKD 622
Query: 350 VCL 352
V L
Sbjct: 623 VVL 625
>gi|225681364|gb|EEH19648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
brasiliensis Pb03]
Length = 668
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ +TL A S D + + ++G SK H LR++ DAIL+G+GT
Sbjct: 386 PRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTA 445
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+AD+P L CR + P II+DP + S D + + AP II
Sbjct: 446 MADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWII 505
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+ S+++EGGA V
Sbjct: 506 VSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVI 565
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G GG+ + + +R G D
Sbjct: 566 SELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKD 625
Query: 350 VCL 352
V L
Sbjct: 626 VVL 628
>gi|160947203|ref|ZP_02094370.1| hypothetical protein PEPMIC_01136 [Parvimonas micra ATCC 33270]
gi|158446337|gb|EDP23332.1| hypothetical protein PEPMIC_01136 [Parvimonas micra ATCC 33270]
Length = 141
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCP--------- 53
++ FM A + T V C++V KD +I G + G P
Sbjct: 4 PWEEYFMDLAKMVATRG---TCDRAYVGCVLVNKDNRIISTGYNGSISGNPQCDEIGHTM 60
Query: 54 ---------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL G + +G T YVT PC +
Sbjct: 61 RDGHCIATIHAEQNALLYCAREGIKVKGCTCYVTHFPCLNC 101
>gi|218532522|ref|YP_002423338.1| bifunctional deaminase-reductase domain protein [Methylobacterium
chloromethanicum CM4]
gi|218524825|gb|ACK85410.1| bifunctional deaminase-reductase domain protein [Methylobacterium
chloromethanicum CM4]
Length = 238
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL------- 329
L + G+ LLVEGG + S + + LVD + L + V G G P+
Sbjct: 147 ALAKLKRLFGIERLLVEGGGRINGSMLKAGLVDELSLLLAPAVDGVLGTPALFDFEGGEG 206
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+ + F V L Y +
Sbjct: 207 DSMGSRRRLTRTACAPFDDGTVWLRYRIE 235
>gi|72160431|ref|YP_288088.1| tRNA-adenosine deaminase [Thermobifida fusca YX]
gi|71914163|gb|AAZ54065.1| tRNA-adenosine deaminase [Thermobifida fusca YX]
Length = 150
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + +S + V +++ DG+VIG G HAEV AL A
Sbjct: 1 MRRALEEAEKT--SSSGDVPVGAVVLDPDGVVIGAGHNEREATGDPTAHAEVLALRAAAR 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 RLGSWRLSGCTLAVTLEPCTMC 80
>gi|315040531|ref|XP_003169643.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
gi|311346333|gb|EFR05536.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893]
Length = 645
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 87/236 (36%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
K H+TL A S D I ++G +K H LR++ DAI++G+GT +ADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKTMTHYLRSRHDAIIIGLGTAVADDPGL 440
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL------LAPVIIVTEND-- 252
CR P +I+DP + S + AP +IV+
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASADSRLLMTAAEGKGKAPWVIVSPGAEL 500
Query: 253 ------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + L +G+ S+++EGG V +N
Sbjct: 501 LPDKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGIVLSELLNPE 560
Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-------FMCVRRDYFGSDVCL 352
VDS+I+ + IG G+ + E ++ G DV +
Sbjct: 561 YVDFVDSVIVTVAPTYIGRNGVSVSPDSKQDEHGSPINALTPHNIKWQPLGKDVIM 616
>gi|225016877|ref|ZP_03706069.1| hypothetical protein CLOSTMETH_00789 [Clostridium methylpentosum
DSM 5476]
gi|224950366|gb|EEG31575.1| hypothetical protein CLOSTMETH_00789 [Clostridium methylpentosum
DSM 5476]
Length = 236
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYL 334
+ G+ +LL+ GG + +F+ VD + L + G+ S L
Sbjct: 151 KLHQMFGIHTLLICGGGTINWTFLQQGAVDELSLLIAPTADGDPDSVTVFEKSVLLPPSA 210
Query: 335 EKNFMCVRRDYFGSD-VCLEYIGK 357
F + + D + L Y K
Sbjct: 211 PAVFQLKKIERLNGDGIWLVYSVK 234
>gi|217979352|ref|YP_002363499.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
gi|217504728|gb|ACK52137.1| CMP/dCMP deaminase zinc-binding [Methylocella silvestris BL2]
Length = 146
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V +IV+DG ++ R HAE+ + A + G YVTLEPC+
Sbjct: 22 PVGAVIVRDGAILARAGNRTLADDDPTAHAEMLTIRAAARALGSQRLAGCDLYVTLEPCA 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|168333891|ref|ZP_02692129.1| CMP/dCMP deaminase, zinc-binding protein [Epulopiscium sp. 'N.t.
morphotype B']
Length = 158
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 34/108 (31%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A T T V ++VKD ++ G
Sbjct: 4 SWDQYFMDIAHLVKTRS---TCTRRQVGAVVVKDKQILSTGYNGAPTSCTHCIELGCMRT 60
Query: 47 ---------TAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE A+ +A + GA YVT +PCS
Sbjct: 61 KLNIPSGERHELCRALHAEQNAITQAAKNGTAVAGAVIYVTAQPCSMC 108
>gi|253989703|ref|YP_003041059.1| hypothetical protein PAU_02223 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781153|emb|CAQ84315.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 193
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA--YGGCPHAEVQAL 60
+ ++M A+ ++ +IV G ++ RGV + H E+QA+
Sbjct: 43 AKHEKYMREAIEEAKKSAKY-----PFGAVIVNRSSGEILSRGVNSWVKNPILHGEIQAI 97
Query: 61 EE-----AGEEARGATAYVTLEPCSHY 82
+ Y T EPCS
Sbjct: 98 NHYVTLYGNQGWNNVALYTTAEPCSMC 124
>gi|88801568|ref|ZP_01117096.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
gi|88782226|gb|EAR13403.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P]
Length = 141
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ AL + + V LIVK+ ++I G G P
Sbjct: 10 DRAYLKMALEWGKLSHCKRK---QVGALIVKNRMIISDGF---NGTPTGFENCCEDSSGN 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + A GAT Y+TL PC+
Sbjct: 64 TKWEVLHAEANAILKVASSTQSAEGATLYITLSPCTQCS 102
>gi|293376240|ref|ZP_06622483.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sanguinis PC909]
gi|292645132|gb|EFF63199.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sanguinis PC909]
Length = 157
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVT-------------AYG 50
S+D FM AL + V IV + ++G G
Sbjct: 7 SWDEYFMGIALLSAMRSK---DPQTQVGACIVNEEHRIVGIGYNGFPHGCKDEEFPWERE 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE A+ + + YV+L PC
Sbjct: 64 GEFINTKYPYVVHAEQNAILNSTTSLKHCRLYVSLFPCHEC 104
>gi|209731626|gb|ACI66682.1| Deoxycytidylate deaminase [Salmo salar]
gi|209735240|gb|ACI68489.1| Deoxycytidylate deaminase [Salmo salar]
gi|303666664|gb|ADM16237.1| Deoxycytidylate deaminase [Salmo salar]
Length = 195
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 34 EYFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWARSADD 90
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 91 RLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 130
>gi|323702624|ref|ZP_08114286.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
nigrificans DSM 574]
gi|323532443|gb|EGB22320.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum
nigrificans DSM 574]
Length = 149
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + L V +I+KD ++ G
Sbjct: 4 SWDEYFMEITRVVATRSTCLRRK---VGAVIIKDKRILTTGYNGAPAGLAHCLEIGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE AL +A G +G+T YVT +PC +
Sbjct: 61 QMGIPSGQRHELCRGLHAEQNALLQAAVHGIAIQGSTIYVTHQPCVLCAKM 111
>gi|299531573|ref|ZP_07044979.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
gi|298720536|gb|EFI61487.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
Length = 162
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE-- 61
+++ ++R + G ++V+DG V+ R V HAE+QAL
Sbjct: 9 KYLLESIRLAMGNVKGRQQPTWPFGAVLVRDGQVLARAVNQVDELCDPSAHAEMQALRIG 68
Query: 62 ---EAGEEARGATAYVTLEPCSHY 82
+ + GA Y + PCS
Sbjct: 69 AKAQGSTDLSGAVMYASGYPCSMC 92
>gi|291486308|dbj|BAI87383.1| hypothetical protein BSNT_05687 [Bacillus subtilis subsp. natto
BEST195]
Length = 174
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+L PV + V + + + L +++ + GG
Sbjct: 55 YEHVKVLTPVFPYQDKTCYVFTGSPDSYQDEHVTFINEGARAFTARLKQEKGSNIWIAGG 114
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
A + + F+ +D I+ +V+G GIP E E FG V L Y+
Sbjct: 115 AELVNDFMKEDAIDEFIITVIPVVLGS-GIPLFHE-LTNETKLRLKGTKQFGQAVQLHYV 172
Query: 356 G 356
Sbjct: 173 R 173
>gi|240143386|ref|ZP_04741987.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
gi|257204654|gb|EEV02939.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82]
gi|291537131|emb|CBL10243.1| Deoxycytidylate deaminase [Roseburia intestinalis M50/1]
gi|291540369|emb|CBL13480.1| Deoxycytidylate deaminase [Roseburia intestinalis XB6B4]
Length = 161
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVT-------------AYG 50
S+D FM A+ N V IV + ++ G
Sbjct: 10 SWDEYFMGVAVLSGMRSK---DPNTQVGACIVSEDHKILSMGYNGFPTGCSDDEFPWERE 66
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G GAT YVTL PC+
Sbjct: 67 GEPLENKYFYTTHSELNAILNYRGGSLEGATIYVTLFPCNEC 108
>gi|168010085|ref|XP_001757735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691011|gb|EDQ77375.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 413
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V ++V +I R HAE+ + A G T YVTLEPC
Sbjct: 232 PVGAVLVHKNKIIARFHNEVETTGDPTAHAEMLCIRCAAAQLGGWRLTDVTLYVTLEPCP 291
Query: 81 HY 82
Sbjct: 292 MC 293
>gi|154686818|ref|YP_001421979.1| hypothetical protein RBAM_023880 [Bacillus amyloliquefaciens FZB42]
gi|308174347|ref|YP_003921052.1| DNA transport protein [Bacillus amyloliquefaciens DSM 7]
gi|154352669|gb|ABS74748.1| ComEB [Bacillus amyloliquefaciens FZB42]
gi|307607211|emb|CBI43582.1| putative enzyme associated to DNA transport (competence) [Bacillus
amyloliquefaciens DSM 7]
Length = 189
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S++ FM+ + + T SV +V+D +I G + G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATVVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CLLIDNHCQRTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQC 101
>gi|123449211|ref|XP_001313327.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895206|gb|EAY00398.1| hypothetical protein TVAG_291040 [Trichomonas vaginalis G3]
Length = 239
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/197 (10%), Positives = 47/197 (23%), Gaps = 9/197 (4%)
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
+ + V + + A+ E + + +
Sbjct: 42 YNHEHDAWLVGRATFDSICTHNETVDLSNMKAECEEGDYIAKRNLDMVAIVVNPKGKLGW 101
Query: 231 SLDSKIIKTALLAPV---IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + I + + I D + +
Sbjct: 102 KENVAHYWGHDSDIIEVLINQSTPQYRNYLRSIGISYIMCGDHDVDWKLMFSKLKNVFNI 161
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVR 342
++ V+GG + S + + LVD + + G +P + F +
Sbjct: 162 KAICVQGGGMINWSLMRTGLVDELSYVIAPTTDGRSTDVSFIRRNPEDTDSPPLEFDLID 221
Query: 343 RDYFGSD-VCLEYIGKN 358
G + V L Y K
Sbjct: 222 VQRVGDNGVWLRYAPKK 238
>gi|295132300|ref|YP_003582976.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
profunda SM-A87]
gi|294980315|gb|ADF50780.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia
profunda SM-A87]
Length = 143
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A +S+ V +IVKD ++I G G P
Sbjct: 10 DKAYLRIAREWSKLSHCKRK---QVGAVIVKDRMIISDGY---NGTPSGFENFCEDEEGY 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + +GAT Y+T+ PC
Sbjct: 64 TKWYVLHAEANAILKVAASTQSCQGATLYITMSPCKECS 102
>gi|307823574|ref|ZP_07653803.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum
SV96]
gi|307735559|gb|EFO06407.1| CMP/dCMP deaminase zinc-binding [Methylobacter tundripaludum
SV96]
Length = 155
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE 61
F+ A+ + + P +IVKD ++ HAEV A+
Sbjct: 1 MHKVFLQQAVDLAAENARSGQGGPY-GAIIVKDNQLVAASGNKVTSTIDPTAHAEVMAIR 59
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
A ++ G Y + EPC
Sbjct: 60 LACKKLNDFQLQGCILYSSCEPCPMC 85
>gi|291301495|ref|YP_003512773.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290570715|gb|ADD43680.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 242
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 27/80 (33%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L RG+ +L EGG V + LVD + L S + G G K
Sbjct: 160 EAFERLRQRGLRQILCEGGPHVFGEITAAGLVDELCLTLSPHLAGAGSGRITAGPPSPLK 219
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
+ ++ L Y
Sbjct: 220 RMHLAHCLHANGNLLLRYTR 239
>gi|88602100|ref|YP_502278.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
hungatei JF-1]
gi|88187562|gb|ABD40559.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum
hungatei JF-1]
Length = 226
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 13/225 (5%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGS----VPITGFISKNQVHLLRAQSDAILVGIG 198
R ++TL V+ D + + S + ++ +H +RA SDAI+VG
Sbjct: 1 MSDHINRPYVTLVSEVTIDGKLTVTRGASSKLLMQFMSHEAEVLLHQIRADSDAIMVGAN 60
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV-IIVTENDDPVLA 257
T+ D+ LT R +P+R+I +S D+ ++ + + + +
Sbjct: 61 TIRIDNSFLTVRHVE--GKNPIRVIPSSKADISPDANVLSPDAPTIIAVSARADKETCTI 118
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
LA + I I + DL L+ +L + V SL++EGG+ + + L+D ++L
Sbjct: 119 LAEKGAYIEICGDEFVDLPILMRLLFEKYSVQSLMIEGGSTLNGNMFQKGLIDELLLIHL 178
Query: 317 QIVIGEGGIPSPLEEG-----YLEKNFMCVRRDYFGSDVCLEYIG 356
+ G PS + + G ++ ++
Sbjct: 179 PFIAGGEDTPSLVTGLHPRDVSDLLKLDLITHFMAGENLITKWRV 223
>gi|313205464|ref|YP_004044121.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
gi|312444780|gb|ADQ81136.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter
propionicigenes WB4]
Length = 141
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R+M A ++ V L+VK+ ++I G G P
Sbjct: 8 LDNRYMRMARIWAENSYCERRK---VGALLVKNQMIISDGY---NGTPSGFENKCEDENN 61
Query: 54 -------HAEVQALEEAGE---EARGATAYVTLEPCSHY 82
HAE A+ + + AT YVT PC
Sbjct: 62 VSKPYVLHAEANAISKIARSHNSSDNATLYVTASPCIEC 100
>gi|257867545|ref|ZP_05647198.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873874|ref|ZP_05653527.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257801601|gb|EEV30531.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808038|gb|EEV36860.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 177
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ V GG ++ + + L+D + + + +GEG E G + V G
Sbjct: 105 NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGDYSRRLTFVETKQMGE 162
Query: 349 DVCLEYIGKNL 359
L ++ K++
Sbjct: 163 LTELHFVRKSV 173
>gi|225017029|ref|ZP_03706221.1| hypothetical protein CLOSTMETH_00951 [Clostridium methylpentosum
DSM 5476]
gi|224950196|gb|EEG31405.1| hypothetical protein CLOSTMETH_00951 [Clostridium methylpentosum
DSM 5476]
Length = 241
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--- 334
L + + L+V GG SF++ L+D + L + + G S E
Sbjct: 158 LKKLRSLFDIKKLMVAGGGTANWSFLSEGLIDELSLVIAPVADGSTTAVSIFERADFLPD 217
Query: 335 --EKNFMCVRRDYFGSDVC-LEY 354
F DV L Y
Sbjct: 218 HGPVAFRLKEVKALEDDVLWLRY 240
>gi|145355155|ref|XP_001421833.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582072|gb|ABP00127.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 125
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCP--------- 53
S+D FMS A ++ N V IV KD +++G G + GCP
Sbjct: 6 SWDDYFMSVAFLSAQRSK---DPNKQVGACIVGKDKLILGVGYNGFPRGCPDNALPWSKK 62
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G + +VT+ PC+
Sbjct: 63 SANDDPLETKYAYVCHAEMNAIMNKNSASVAGGSLFVTMYPCNEC 107
>gi|139438469|ref|ZP_01771985.1| Hypothetical protein COLAER_00975 [Collinsella aerofaciens ATCC
25986]
gi|133776008|gb|EBA39828.1| Hypothetical protein COLAER_00975 [Collinsella aerofaciens ATCC
25986]
Length = 186
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FMS A+ R N V I + ++ G G P
Sbjct: 30 SWDEFFMSVAIAAQRRSK---DPNTQVGACIANTNHRILSVGY---NGTPSALNDDFFPW 83
Query: 54 ---------------HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
HAE A+ + ++ G+T YVTL PC
Sbjct: 84 GTSDDPLQDKHNYVVHAEANAVLNYRGSLKDLEGSTVYVTLFPCHDC 130
>gi|62389126|ref|YP_224528.1| cytosine deaminase [Corynebacterium glutamicum ATCC 13032]
gi|41324459|emb|CAF18799.1| PUTATIVE CYTOSINE DEAMINASE [Corynebacterium glutamicum ATCC
13032]
Length = 143
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA- 63
M AL +R G V +I G ++ HAE+ AL A
Sbjct: 1 MRHALDIARQTPEGDV----PVGAVIYAPTGEILATATNRREADRDPTAHAEIIALRRAA 56
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G TA VTLEPCS
Sbjct: 57 RRFSDGWRLSDCTAVVTLEPCSMC 80
>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
14884]
gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
14884]
Length = 528
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
+ ++V+DG V+ + HAE+ AL A GAT YVTLEPC
Sbjct: 405 PIGAVLVRDGAVLAEAANAVEASRDATAHAELLALRTALRRVGEKVLPGATLYVTLEPCP 464
Query: 81 HY 82
Sbjct: 465 MC 466
>gi|193215821|ref|YP_001997020.1| CMP/dCMP deaminase [Chloroherpeton thalassium ATCC 35110]
gi|193089298|gb|ACF14573.1| CMP/dCMP deaminase zinc-binding [Chloroherpeton thalassium ATCC
35110]
Length = 161
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
R M A R + V ++ +G ++GRG HAE+ AL
Sbjct: 10 RLMEMAFREAEKAFEKNEV----PVGAVVFDSNGAIVGRGFNQVEMLCDTTAHAEMIALT 65
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
A + T VT+EPC
Sbjct: 66 SAMNTLGDKYLTDCTLAVTMEPCPMC 91
>gi|323344020|ref|ZP_08084246.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
gi|323094749|gb|EFZ37324.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269]
Length = 148
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V L+VK+ ++I G G P
Sbjct: 10 KLDLRYLRMARVWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCEDEN 63
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 64 SITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIEC 103
>gi|114567897|ref|YP_755051.1| ComE operon protein 2 [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338832|gb|ABI69680.1| putative ComE operon protein 2 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 156
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 32/111 (28%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
+D F+ A + T V ++VK+ +I G
Sbjct: 7 DWDEYFLQLADLVATRS---TCLRRQVGAVLVKNERIISTGYNGAPRGLEHCLDIGCLRE 63
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE AL A G A Y T +PC R
Sbjct: 64 EQGIPSGHRYELCRGVHAEQNALINAAYYGISTAEAVIYCTNQPCIICARM 114
>gi|218514635|ref|ZP_03511475.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli 8C-3]
Length = 237
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ +VIGE
Sbjct: 143 YCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGE 196
>gi|302507506|ref|XP_003015714.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
benhamiae CBS 112371]
gi|291179282|gb|EFE35069.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma
benhamiae CBS 112371]
Length = 645
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTLLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 440
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDP 254
CR P +I+DP + S ++ + AP +IV+ +
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500
Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + L +G+ S+++EGG V +N
Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560
Query: 305 -SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G G+ + L ++ G DV +
Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNIKWQPLGKDVIM 616
>gi|282859489|ref|ZP_06268594.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella bivia JCVIHMP010]
gi|282587717|gb|EFB92917.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella bivia JCVIHMP010]
Length = 144
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ V L+VKD ++I G G P
Sbjct: 8 LDYRYLRMARIWAENSYCKRR---QVGALVVKDKMIISDGY---NGTPSGFENVCEDDNN 61
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + G+T YVT PC
Sbjct: 62 ITKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIEC 100
>gi|256831602|ref|YP_003160329.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
gi|256685133|gb|ACV08026.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603]
Length = 154
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 11 MSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG 64
M AL +R + L + + +I+ G I HAE+ A+ +A
Sbjct: 1 MDDALTEARRALRLHGPPDVPIGAVIIDAHGHTIAAAHNERELTQDPTAHAEILAIRKAA 60
Query: 65 -----EEARGATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 61 THLGTWRLDQCTLVVTLEPCAMC 83
>gi|67459711|ref|YP_247335.1| cytosine deaminase [Rickettsia felis URRWXCal2]
gi|67005244|gb|AAY62170.1| Cytosine deaminase [Rickettsia felis URRWXCal2]
Length = 159
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+ F+ FM AL+ + + V +IV + +I HAE+
Sbjct: 9 TDFNNFFMEQALKQA--GIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 67 IAINEACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|114564723|ref|YP_752237.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
400]
gi|114336016|gb|ABI73398.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB
400]
Length = 144
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I ++ ++ G Y G
Sbjct: 2 MTKWATRFLQMAELVASWSK---DPSTRVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILHAKRDLSSCEIWVTHFPCPNCAAKI-IQTGLRAVHSPKPNEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWGDKIKVSQDMFEQAGVQVDWMQ 142
>gi|167748501|ref|ZP_02420628.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
gi|167652493|gb|EDR96622.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662]
Length = 170
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT--------- 47
M + +D FM AL ++ + V +V D ++ G
Sbjct: 12 MKRTDYLSWDQYFMGVALLSAQRSK---DDHTQVGACLVNDQNKILSVGYNGMPTGCHDD 68
Query: 48 ----AYGGCP---------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ G GA YVTL PC+
Sbjct: 69 DMPWEREGEPLDTKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNEC 117
>gi|328872297|gb|EGG20664.1| adenosine deaminase [Dictyostelium fasciculatum]
Length = 307
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
+++M A+ + G V C+IV ++G VI RG HAE+
Sbjct: 69 EKHSKYMRLAIEQGYIALNEGEV----PVGCVIVHRNGTVIARGFNKTNIKKNATRHAEI 124
Query: 58 QALEE 62
+AL+
Sbjct: 125 EALDS 129
>gi|242043476|ref|XP_002459609.1| hypothetical protein SORBIDRAFT_02g007465 [Sorghum bicolor]
gi|241922986|gb|EER96130.1| hypothetical protein SORBIDRAFT_02g007465 [Sorghum bicolor]
Length = 175
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
D +F+ A+ + V +IV + HAEV A+
Sbjct: 17 ERDYKFILKAVDEAYRAV-ECDGGYPFGAVIVHGDEEVVSSHNLVRKDTDPSAHAEVAAI 75
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+A ++ Y + EPC
Sbjct: 76 RQACKKLGKINLSDCEIYTSCEPCPMC 102
>gi|258577771|ref|XP_002543067.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903333|gb|EEP77734.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 612
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 31/238 (13%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
K H+TL A S D I +A ++G SK H LR++ DAILVG+GT LAD+P
Sbjct: 349 NRKFPHVTLTYAQSMDGKISLAPGVQTALSGPESKLMTHYLRSRHDAILVGVGTALADNP 408
Query: 206 ELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTEND 252
L CR + P +I+DP + + + + P I+V+
Sbjct: 409 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWTFNPECRMLQSALAGKGKGPWIVVSPGA 468
Query: 253 DPV--------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + L G++S++VEGG V +N
Sbjct: 469 NIPADRILLLKKHGGDFLRIAEFNPAWRLRWSTIFGALAAEGISSVMVEGGGVVLSELLN 528
Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
+DS+I+ + +G GG+ + + V+ G D+ +
Sbjct: 529 PEYEDFIDSVIVTVAPTYLGRGGVAVAPDSKRDDYGKPKIALKPKEVKWHPLGQDMIM 586
>gi|86140853|ref|ZP_01059412.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
MED217]
gi|85832795|gb|EAQ51244.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis
MED217]
Length = 146
Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A +++ V LIVKD ++I G G P
Sbjct: 13 DIAYLRMAREWAKLSYCQRK---QVGALIVKDKMIISDGY---NGTPTGFENICEDEEGY 66
Query: 54 ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC+
Sbjct: 67 TKWYVLHAEANAILKVAASTQSCVGATLYITLSPCTECS 105
>gi|312220490|emb|CBY00431.1| similar to CMP/dCMP deaminase zinc-binding [Leptosphaeria maculans]
Length = 179
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYG-GCPHAEVQALE 61
+ ++M AL + S N V L+V G ++ RG T G HAE L
Sbjct: 15 NDHMQYMRLALDQAEKSPPKPS-NFRVGALLVNADTGSILSRGYTLECEGNTHAEQCCLL 73
Query: 62 E-----------AGEEA-RGATAYVTLEPCS 80
+ GE Y T+EPC+
Sbjct: 74 KFAQAHDLPEDRVGEALPPNTVIYTTMEPCN 104
>gi|257877626|ref|ZP_05657279.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257811792|gb|EEV40612.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 177
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ V GG ++ + + L+D + + + +GEG E G + V G
Sbjct: 105 NVWVVGGGSLLKPLLEADLIDEWFIQIAPVFLGEG--KRLFEPGEYSRRLTFVETKQMGE 162
Query: 349 DVCLEYIGKNL 359
L ++ K++
Sbjct: 163 LTELHFVRKSV 173
>gi|194212324|ref|XP_001917931.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
[Equus caballus]
Length = 178
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N VA IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVAACIVNAENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 113
>gi|328554294|gb|AEB24786.1| enzyme associated to DNA transport (competence) [Bacillus
amyloliquefaciens TA208]
gi|328912690|gb|AEB64286.1| ComE operon protein 2 [Bacillus amyloliquefaciens LL3]
Length = 189
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S++ FM+ + + T SV +V+D +I G + G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCPRLSVGATVVRDKRMIAGGYNGSIAGGVHCADEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 CLLIDNHCQRTIHAEMNAILQCSKFGVPTEGAEIYVTHYPCIQC 101
>gi|320353575|ref|YP_004194914.1| dCMP deaminase [Desulfobulbus propionicus DSM 2032]
gi|320122077|gb|ADW17623.1| dCMP deaminase [Desulfobulbus propionicus DSM 2032]
Length = 164
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP---------- 53
S+D FM+ A+ N V + ++G G G P
Sbjct: 10 SWDEYFMAVAILSGHRSK---DPNTQVGACVANSQNKIVGVGY---NGFPWGCSDDELPW 63
Query: 54 ---------------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + R YV L PC+
Sbjct: 64 SREGSYLDTKYPYVCHAELNAVLNSITYDLRDCRLYVALFPCNEC 108
>gi|154482616|ref|ZP_02025064.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
27560]
gi|149736516|gb|EDM52402.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC
27560]
Length = 163
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A + N V IV D ++ G
Sbjct: 11 SWDEYFMGVASLAALRSK---DPNTQVGACIVSDDNKILSMGYNGLPVGCSDDEFPWNRE 67
Query: 47 ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
Y H+E+ A+ G GA YVTL PC+
Sbjct: 68 SDDPYDNKYFYTTHSELNAILNYRGGSLEGAKIYVTLFPCNEC 110
>gi|322699644|gb|EFY91404.1| putative dCMP deaminase [Metarhizium acridum CQMa 102]
Length = 379
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 39/115 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM+ A ++ + V C++V ++ VI G G P
Sbjct: 224 WDTYFMALASLAAQRSNCMKR---RVGCVLVGRERRVISTGY---NGTPRGIRNCADGGC 277
Query: 54 -------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPP 87
HAE AL EAG E G+ Y PC
Sbjct: 278 PRCNEGNSSGVGLATCLCIHAEENALLEAGRERIRDGSVLYCDTCPCLTCSIKIC 332
>gi|291520267|emb|CBK75488.1| Deoxycytidylate deaminase [Butyrivibrio fibrisolvens 16/4]
Length = 161
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
S+D FM A+ N V IV +D ++ G
Sbjct: 10 SWDEYFMGVAVLSGMRSK---DPNTQVGACIVSQDNKILSMGYNGFPNGCSDDEFPWARV 66
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G G+ YV+L PC+
Sbjct: 67 GDPLENKYFYTTHSELNAILNYRGGSLEGSKLYVSLFPCNEC 108
>gi|225155324|ref|ZP_03723817.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
gi|224803931|gb|EEG22161.1| CMP/dCMP deaminase zinc-binding [Opitutaceae bacterium TAV2]
Length = 163
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAY-GGCPH----- 54
S+D FM+ A+ S V C++V G ++ G Y G PH
Sbjct: 26 SWDDYFMATAVLLSTRSPCERLH---VGCVLVSGGARPNRLVAAGYNGYLPGTPHVSRVR 82
Query: 55 ---------AEVQALEEA---GEEARGATAYVTLEPCSHY 82
AE A+ +A G G AYVT PC +
Sbjct: 83 DGHEQATVHAEQNAVADAARRGSSLEGCVAYVTHFPCINC 122
>gi|123495816|ref|XP_001326830.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
gi|121909750|gb|EAY14607.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
Length = 239
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
I D L + + ++ V+GG + S + + LVD + + G
Sbjct: 138 YIICGDHDVDWKLMLTKLKNIFHIKAICVQGGGMINWSLLRAGLVDELSYVMAPTTDGRS 197
Query: 324 G-----IPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
+P + F + G + V L Y K
Sbjct: 198 TDVSFIRRNPEDTDSPPLEFDLIDVQRIGENGVWLRYAPKK 238
>gi|302666117|ref|XP_003024661.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
verrucosum HKI 0517]
gi|291188727|gb|EFE44050.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton
verrucosum HKI 0517]
Length = 645
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 31/250 (12%)
Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
+ K H+TL A S D I ++G +K H LR++ DAI
Sbjct: 367 DHNHGNDNSHSGETKFPHVTLTYAQSMDGKISTKPGVQTLLSGPDTKAMTHYLRSRHDAI 426
Query: 194 LVGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTA 240
++G+GT LADDP L CR P +I+DP + S ++ +
Sbjct: 427 IIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGK 486
Query: 241 LLAPVIIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
AP +IV+ + + + + L +G+ S+++
Sbjct: 487 GKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMI 546
Query: 293 EGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVR 342
EGG V +N VDS+I+ + +G G+ + L ++
Sbjct: 547 EGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNIK 606
Query: 343 RDYFGSDVCL 352
G DV +
Sbjct: 607 WQPLGKDVIM 616
>gi|241760863|ref|ZP_04758952.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241374482|gb|EER63943.1| CMP/dCMP deaminase zinc-binding [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 160
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEA 63
M AL + G V ++ G +I A HAEV+AL +A
Sbjct: 17 MRHALLQAESAAHQGEV----PVGAVVTFKGKIIAVAGNAMQPPFIDPTGHAEVRALRQA 72
Query: 64 -----GEEARGATAYVTLEPCSHY 82
+VTLEPC+
Sbjct: 73 ASVLGSSRLDQCDLWVTLEPCAMC 96
>gi|210623304|ref|ZP_03293721.1| hypothetical protein CLOHIR_01671 [Clostridium hiranonis DSM 13275]
gi|210153705|gb|EEA84711.1| hypothetical protein CLOHIR_01671 [Clostridium hiranonis DSM 13275]
Length = 149
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 33/112 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A + T V +IVKD ++ G
Sbjct: 4 SWDEYFMEIAEVVKKRS---TCIRRQVGAIIVKDKQILTTGYNGAPKNLEHCQNIGCKRE 60
Query: 47 --TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSP 86
G HAE A+ +A G + AT YVT PC +
Sbjct: 61 QMHIPSGERHELCRALHAEQNAIIQAAYNGVSIKDATLYVTTRPCVLCAKMC 112
>gi|126275980|ref|XP_001387170.1| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|126213039|gb|EAZ63147.1| predicted protein [Pichia stipitis CBS 6054]
Length = 265
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 18/199 (9%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
Q +KR +TL A S D+ I I+ +K H LR++ DAI+V IGTV ADD
Sbjct: 37 QHQKRPFVTLTYAQSLDSRIAAKKGTQTKISHLETKTMTHYLRSKHDAIMVAIGTVQADD 96
Query: 205 PELTCRLNGLQEHSPMR-IILDPHFKLS-----LDSKIIKTALLAPVIIVTENDDPVLAL 258
P+L CR R +ILDPH K + L + AP II+ EN P
Sbjct: 97 PKLNCRYREDGNDHSPRPVILDPHGKWNYSESQLRAICDNKQGKAPYIIIEENVKPKQED 156
Query: 259 AFR-------KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-----NSR 306
+ + + +L L GV S+++EGGA V + +
Sbjct: 157 IEILQEQNGLFIYLPLSTDHSANWDLILQKLHDLGVESIMIEGGAMVINELLDFHRTQHD 216
Query: 307 LVDSIILYRSQIVIGEGGI 325
L+DS+I+ I +G G+
Sbjct: 217 LIDSLIITVGPIFLGSQGV 235
>gi|317503536|ref|ZP_07961560.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
gi|315665348|gb|EFV04991.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606]
Length = 150
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ L V L+VKD ++I G G P
Sbjct: 9 NLDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDNE 62
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 63 GVTYPYVLHAEANAITKLARSNNNSDGSTLYVTASPCIEC 102
>gi|302335967|ref|YP_003801174.1| dCMP deaminase [Olsenella uli DSM 7084]
gi|301319807|gb|ADK68294.1| dCMP deaminase [Olsenella uli DSM 7084]
Length = 160
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A+ S V I + ++ G G P
Sbjct: 10 SWDEFFMRVAIAASLRSK---DPKTQVGACIADTNDRILSVGY---NGTPSGLDDDEFPW 63
Query: 54 ---------------HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
HAE A+ + ++ +GA YVTL PC
Sbjct: 64 GTSEDPLFDKHNYVIHAEANAILNYRGSLKDMQGAKVYVTLFPCQEC 110
>gi|169832085|ref|YP_001718067.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C]
gi|169638929|gb|ACA60435.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis
audaxviator MP104C]
Length = 149
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
++D FM A +R T V ++V+D I G
Sbjct: 4 TWDEIFMEQAHLMARRS---TCLRRHVGAVLVRDNRAIASGYNGPPSGLPHCDERGGCLR 60
Query: 51 ---GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G P HAE + + G R AT YVT PC
Sbjct: 61 EQLGVPSGHRQEICRALHAEQNVILQLAITGLNGRDATLYVTHFPCFTC 109
>gi|15672703|ref|NP_266877.1| hypothetical protein L127182 [Lactococcus lactis subsp. lactis
Il1403]
gi|281491217|ref|YP_003353197.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp.
lactis KF147]
gi|12723633|gb|AAK04819.1|AE006305_11 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|281374958|gb|ADA64476.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp.
lactis KF147]
gi|326406265|gb|ADZ63336.1| tRNA-specific adenosine deaminase [Lactococcus lactis subsp.
lactis CV56]
Length = 155
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE---- 65
AL+ ++ + +IVKDG +I R G HAEV A+E A +
Sbjct: 15 ALKEAQKAAEN--EEVPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGN 72
Query: 66 -EARGATAYVTLEPCSHY 82
+VT+EPC
Sbjct: 73 WRLLDCALFVTIEPCVMC 90
>gi|116694008|ref|YP_728219.1| putative cytosine/adenosine deaminase [Ralstonia eutropha H16]
gi|113528507|emb|CAJ94854.1| Putative Cytosine/adenosine deaminase [Ralstonia eutropha H16]
Length = 145
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
M A+R + + + ++V DG + GV ++ HAE++A+ A +
Sbjct: 1 MREAVRLAAANRDRGAR--PFGAVLVLDGEAVATGVNDIVHSHDPTTHAEMEAVRAAARK 58
Query: 67 -----ARGATAYVTLEPCSHY 82
RG+ Y + PC
Sbjct: 59 LGRPDLRGSVVYASGHPCPMC 79
>gi|310792224|gb|EFQ27751.1| riboflavin-specific deaminase domain-containing protein [Glomerella
graminicola M1.001]
Length = 269
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG--- 324
D + +L++L G+ S++VEGG V +S +N + VD++I+ + +G GG
Sbjct: 170 PRFDWQSILSVLHSEGLHSVMVEGGGQVINSLLNPDSQQFVDTVIVTVAPTWLGRGGVVV 229
Query: 325 ----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ +P V FG D+ L
Sbjct: 230 SPERVHTPDGTPVPAARLANVAWHQFGEDIVL 261
>gi|332969045|gb|EGK08085.1| tRNA-specific adenosine deaminase [Kingella kingae ATCC 23330]
Length = 246
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V G +I + HAE+ AL AG+ YV+LEPC+
Sbjct: 118 PVGAVVVHRGEIIAQAHNRCIADCDIGRHAEMNALALAGKTLGNYRLADCDLYVSLEPCT 177
Query: 81 HY 82
Sbjct: 178 MC 179
>gi|317471969|ref|ZP_07931301.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Anaerostipes sp. 3_2_56FAA]
gi|316900373|gb|EFV22355.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Anaerostipes sp. 3_2_56FAA]
Length = 170
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT--------- 47
M + +D FM AL ++ + V +V D ++ G
Sbjct: 12 MKRTDYLSWDQYFMGVALLSAQRSK---DDHTQVGACLVNDQNKILSVGYNGMPTGCHDD 68
Query: 48 ----AYGGCP---------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ G GA YVTL PC+
Sbjct: 69 DMPWEREGEPLDTKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNEC 117
>gi|71023879|ref|XP_762169.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
gi|46101653|gb|EAK86886.1| hypothetical protein UM06022.1 [Ustilago maydis 521]
Length = 253
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R H+TL A S D I G + ++G S H LR D I+VGIGTVL D+P+L
Sbjct: 26 RRPHVTLTFAQSSDGKIAGPGKTQLALSGPESMRLTHQLRTMHDGIMVGIGTVLNDNPQL 85
Query: 208 TCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALA- 259
R P ++LD ++ +D K+I+ P+++ ++ P
Sbjct: 86 NARLLYAPPPVSRLPRPVVLDSKLRMPVDCKLIRNYAAGIGRQPLVLTLDSAHPDRRTQL 145
Query: 260 ----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIILY 314
++ D +L L G+ L+VEGGA V S + + +D++++
Sbjct: 146 ELAGVDVIQVHDSSAALLDWTTILQHLYDAGIRRLMVEGGAGVIDSLMQQSQHIDALLVT 205
Query: 315 RSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ + +G G + E + + + R +FG D + + +
Sbjct: 206 IAPLTVGSEGFSFTSKLPSISEAHPDAEWSLPSRAWFGKDEVIVWHKR 253
>gi|300725950|ref|ZP_07059412.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
bryantii B14]
gi|299776801|gb|EFI73349.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
bryantii B14]
Length = 144
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ V L+VKD ++I G G P
Sbjct: 10 LDLRYLRMARIWAENSYCKRRK---VGALVVKDKMIISDGY---NGTPSGFENICEDDND 63
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 64 VTKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIEC 102
>gi|158425795|ref|YP_001527087.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
gi|158332684|dbj|BAF90169.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571]
Length = 246
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 7/207 (3%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+ ++ S D I + S I G + +H +RA DA+LVG+GTV+ADDP+L
Sbjct: 19 PQFVIGQLGQSLDGRIALPSGESKYINGASGLDHIHRIRAMVDAVLVGVGTVIADDPQLN 78
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
R P R++LDP+ +L ++ ++ +++ + AL + + +
Sbjct: 79 VRRVP--GRDPARVVLDPNGRLPASARCLQNDGARRLVVRRPSAAG--ALPDGVERVEVE 134
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327
D ++ L RG+ +LVEGG +F++ +D + S +++G G
Sbjct: 135 GTGALDPAAVVAALRARGLKRILVEGGPRTLSAFLDGGAIDHFHIIVSPVILGSGRTGLD 194
Query: 328 --PLEEGYLEKNFMCVRRDYFGSDVCL 352
P+ + DV
Sbjct: 195 LKPITGLSAALRPTTRVHVFPDGDVLF 221
>gi|119486680|ref|XP_001262326.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
gi|119410483|gb|EAW20429.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181]
Length = 627
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 31/234 (13%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 383 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 442
Query: 210 R-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTENDDPVL 256
R + P +++DP + + + AP +IV+
Sbjct: 443 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 502
Query: 257 ALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
K + +L L G+ S+++EGG V +N +
Sbjct: 503 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 562
Query: 306 RLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
+ +DSII+ + +G GG+ SP + N ++ G +V +
Sbjct: 563 QFIDSIIVTVAPTYLGRGGVGVSPDSKRDEQGKPNAALNPREIKWVPLGQNVIM 616
>gi|116873939|ref|YP_850720.1| reductase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742817|emb|CAK21941.1| reductase family protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 174
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHKLELEEVTRFGQF 163
Query: 350 VCLEY 354
L Y
Sbjct: 164 AQLTY 168
>gi|260912280|ref|ZP_05918831.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
str. F0295]
gi|260633581|gb|EEX51720.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
str. F0295]
Length = 144
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 28/104 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ + V L+VKD ++I G G P
Sbjct: 6 KQTVLDLRYLRMARIWAENSYCVRRK---VGALVVKDKMIISDGY---NGTPSGFENVCE 59
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ + + G+T YVT PC
Sbjct: 60 DDNNVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIECS 103
>gi|160938326|ref|ZP_02085681.1| hypothetical protein CLOBOL_03223 [Clostridium bolteae ATCC
BAA-613]
gi|158438699|gb|EDP16456.1| hypothetical protein CLOBOL_03223 [Clostridium bolteae ATCC
BAA-613]
Length = 155
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
D FM A+R S+ V + N ++VKDG +I T HAE L
Sbjct: 4 DEIFMKEAIRLSQLAV--SHGNEPFGAVLVKDGEIIFSNENQIYTGSDPTFHAEAGLLRR 61
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
+ R T Y + EPC
Sbjct: 62 FCAETHITDLREYTLYSSCEPCFMC 86
>gi|330991695|ref|ZP_08315645.1| putative cytosine deaminase [Gluconacetobacter sp. SXCC-1]
gi|329761163|gb|EGG77657.1| putative cytosine deaminase [Gluconacetobacter sp. SXCC-1]
Length = 280
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVI---GRGVTAYGG--CPHAEVQA 59
F+ A + + C++V G V+ G G TA GG HAE
Sbjct: 122 DHEHFLRRAFAVAERARQ--GGDHPFGCILVDATGKVVLEQGNGYTAEGGDMTAHAERLL 179
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
A + G T Y + EPC+
Sbjct: 180 ATRASKRFPPAELAGCTMYTSAEPCAMC 207
>gi|264677000|ref|YP_003276906.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
gi|262207512|gb|ACY31610.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
Length = 162
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE-- 61
+++ ++R + G ++V++G V+ R V HAE+QAL
Sbjct: 9 KYLLESIRLAMGNVKGRQQPTWPFGAVLVRNGQVLARAVNQVDELCDPSAHAEMQALRIG 68
Query: 62 ---EAGEEARGATAYVTLEPCSHY 82
+ + GA Y + PCS
Sbjct: 69 AKAQGSTDLSGAVMYASGYPCSMC 92
>gi|170078671|ref|YP_001735309.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Synechococcus sp. PCC 7002]
gi|169886340|gb|ACB00054.1| Cytidine and deoxycytidylate deaminase zinc-binding protein
[Synechococcus sp. PCC 7002]
Length = 158
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
+M A+ ++ G + P V +IV + + HAE+ +
Sbjct: 10 HYHWMQKAIALAKVA-GQSGEIP-VGAVIVDGKNQCLAQSGNRKEKTQDPTAHAEMLVIR 67
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + + T YVTLEPC
Sbjct: 68 AASQMRQDWHLQDCTLYVTLEPCPMC 93
>gi|156846788|ref|XP_001646280.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156116955|gb|EDO18422.1| hypothetical protein Kpol_1032p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 612
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE----E 62
++M AL ++ T T SV ++ V+ G + G HAE ALE +
Sbjct: 464 KKYMELALEEAKK-CPPTKTAFSVGAILANGTEVLSTGYSRELEGNTHAEQCALEKYFTK 522
Query: 63 AGEE--ARGATAYVTLEPCSH 81
G+ G+ Y T+EPCS+
Sbjct: 523 IGKREVPLGSVLYTTMEPCSY 543
>gi|238859570|ref|NP_848903.2| deoxycytidylate deaminase [Mus musculus]
gi|238859573|ref|NP_001154987.1| deoxycytidylate deaminase [Mus musculus]
gi|238859575|ref|NP_001154988.1| deoxycytidylate deaminase [Mus musculus]
gi|148703670|gb|EDL35617.1| dCMP deaminase, isoform CRA_a [Mus musculus]
gi|148703671|gb|EDL35618.1| dCMP deaminase, isoform CRA_a [Mus musculus]
Length = 184
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 23 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 76
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 77 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 119
>gi|221064913|ref|ZP_03541018.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
gi|220709936|gb|EED65304.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
Length = 166
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG--VTAYGG--CPHAEV 57
++ D R++ A+ + N LIV DG V+ + G HAE+
Sbjct: 9 LNDADGRYLREAIALADTARER--GNRPFGALIVAADGRVLAQASNANGESGDCTAHAEL 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ A E AT Y + EPC
Sbjct: 67 SAIRLASPLHSRNELAVATLYSSAEPCVMC 96
>gi|163856878|ref|YP_001631176.1| putative zinc-binding hydrolase [Bordetella petrii DSM 12804]
gi|163260606|emb|CAP42908.1| putative zinc-binding hydrolase [Bordetella petrii]
Length = 164
Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V ++V G V+G G T HAE+ AL A G + YVTLEPC
Sbjct: 33 PVGAVVVDAQGQVLGAGYNRTITDSDPTAHAEIVALRAAARRLGNYRLPGVSLYVTLEPC 92
Query: 80 SHY 82
Sbjct: 93 VMC 95
>gi|317054801|ref|YP_004103268.1| dCMP deaminase [Ruminococcus albus 7]
gi|315447070|gb|ADU20634.1| dCMP deaminase [Ruminococcus albus 7]
Length = 159
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A ++ + V IV + ++ G G P
Sbjct: 8 SWDEYFMGIAHLSAKRSK---DPSTQVGACIVSEENKILSVGY---NGMPTGCNDDDMPW 61
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + A YV+L PC+
Sbjct: 62 ERDGDFLETKYPFVCHAELNAILNRSTGSLKNARIYVSLFPCNEC 106
>gi|254557435|ref|YP_003063852.1| reductase (putative) [Lactobacillus plantarum JDM1]
gi|254046362|gb|ACT63155.1| reductase (putative) [Lactobacillus plantarum JDM1]
Length = 179
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+++ + ++ + + K++ L ++ + G
Sbjct: 56 YMMEQTTDQLINPYNPATHNIVMTSHPHTGDERTQFTNTPVTKIVEDLRRTAGKNIWIVG 115
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA V + + LVD + + + +++G GIP + ++ F V + +G + Y
Sbjct: 116 GAGVLMPLLAADLVDELYIQIAPVILG-DGIPLF-KAIDQQQRFELVDTNRYGQLAEVHY 173
Query: 355 IG 356
Sbjct: 174 QR 175
>gi|241763336|ref|ZP_04761392.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
gi|241367488|gb|EER61787.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
Length = 242
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 66/237 (27%), Gaps = 25/237 (10%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R +I + S D I + I + + + A L G T +
Sbjct: 1 MNRPYIVCHMMTSLDGKITGPYMRTKAIKLPAQEYERTNSLYRPQAWLCGRVTTDENFTF 60
Query: 207 LTCRLNGLQEH-------------SPMRIILDPHFKLSLDSK--IIKTALLAPVIIV--- 248
+ + +D K+ +S + A VI V
Sbjct: 61 YKKPMLDENAPAVPEGDYVAVSDAQMHYVSVDASGKIGWESNTLHYEDRPAAHVIEVLTD 120
Query: 249 -TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
N + I + + +L++ GG + SF+ + L
Sbjct: 121 KASNAYRDFLRKMKISYIIAGKDQLDCQLAAEKLKALFKIETLMLSGGGFINWSFLQAGL 180
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDY-FGSDVCLEYIGKN 358
VD + L + + GE + E+ F + G + L Y KN
Sbjct: 181 VDELSLILAPLADGENKTSTLFEKSDFLPERAPVEFALKSVEKGQGDSIWLRYTVKN 237
>gi|325954402|ref|YP_004238062.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
16922]
gi|323437020|gb|ADX67484.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM
16922]
Length = 143
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----------AYGGCP-- 53
D ++ A +++ V +IVKD +I G G
Sbjct: 10 DKAYLRIAREWAKLSYCERKK---VGAIIVKDRAIISDGFNGSPSGFDNRCEDENGETKW 66
Query: 54 ---HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + +GAT Y+TL PC
Sbjct: 67 YILHAEANAILKVAASTQSCKGATLYLTLSPCKDCS 102
>gi|189346358|ref|YP_001942887.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
gi|189340505|gb|ACD89908.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
Length = 174
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP----------- 53
+ FMS A SR + +IV+D ++ G G P
Sbjct: 28 WHEYFMSVAHLISRRATCTRGH---IGAVIVRDHNILSTGYNGAPSGLPHCNETNCRIYR 84
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + A Y+T PC H
Sbjct: 85 STHPDGTIEENCVNTIHAEINAIAQAAKHGVSIKDADIYITASPCIHC 132
>gi|304384459|ref|ZP_07366862.1| competence protein ComEB [Prevotella marshii DSM 16973]
gi|304334453|gb|EFM00743.1| competence protein ComEB [Prevotella marshii DSM 16973]
Length = 147
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V L+VKD ++I G G P
Sbjct: 9 ELDLRYLRMARIWAENSYCQRRK---VGALVVKDKMIISDGY---NGTPSGFENICEDED 62
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ + + +T YVT PC
Sbjct: 63 NTTKPYVLHAEANAITKLARSSNNSDNSTLYVTASPCIECS 103
>gi|325286502|ref|YP_004262292.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
7489]
gi|324321956|gb|ADY29421.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM
7489]
Length = 146
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 31/108 (28%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M S D ++ A + + V +IVKD ++I G G P
Sbjct: 7 MKDSKQRKYDEAYLRMAQEWGKLSYCKRK---QVGAIIVKDRMIISDGY---NGTPTGFE 60
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 61 NICEDEEGYTKWYVLHAEANAISKVASSTQSCTGATLYITLSPCKECS 108
>gi|157376789|ref|YP_001475389.1| CMP/dCMP deaminase, zinc-binding [Shewanella sediminis HAW-EB3]
gi|157319163|gb|ABV38261.1| CMP/dCMP deaminase, zinc-binding [Shewanella sediminis HAW-EB3]
Length = 145
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 21/145 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
++ + RF+ A + W + V +I ++ ++ G Y G
Sbjct: 2 MTKWAIRFLQMAELVASWSK---DPSTQVGAVITENNRIVSLGFNGYPHGISDSAETDNR 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + +VT PC + + +
Sbjct: 59 EMKLLKTLHAEENAILHAKRDLSSCEIWVTHFPCPNCAAKI-IQTGLRAVHSPQPSEDFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130
Q G+ VD M
Sbjct: 118 SRWGDKIKVSQDMFDQAGVQVDWMQ 142
>gi|134094122|ref|YP_001099197.1| putative guanine deaminase [Herminiimonas arsenicoxydans]
gi|133738025|emb|CAL61070.1| putative Guanine deaminase (Guanase) (Guanine aminase) (Guanine
aminohydrolase) (GAH) (GDEase) [Herminiimonas
arsenicoxydans]
Length = 153
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
S A+ + A+R ++ + ++ DG +I G V ++ HAE++ L
Sbjct: 2 SDHAKLLGEAVRLAKNNHQQGGR--PFGAVLTMDGEIIATGVNNIVHSHDPTTHAEMETL 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
A + +G+ Y + PC
Sbjct: 60 RAASQRLGRPNLKGSVVYASGHPCPMC 86
>gi|291336300|gb|ADD95862.1| hypothetical protein [uncultured organism MedDCM-OCT-S12-C54]
Length = 212
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAYGGC 52
P SS D +M A S+ V C IV G VI GV +
Sbjct: 30 PASSADENYMDLAFLLSQSSTAT----GRVGCAIVSGVRDGAAKDQGSVIVCGVNSGLYS 85
Query: 53 P-----HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
P HAE A+ E +G RGAT YV+ PC+H
Sbjct: 86 PLKADCHAEANAIAESAASGWPLRGATCYVSKPPCNHC 123
>gi|195349159|ref|XP_002041114.1| GM15219 [Drosophila sechellia]
gi|194122719|gb|EDW44762.1| GM15219 [Drosophila sechellia]
Length = 160
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
FM AL +R G V C+ V G V+ RG HAE ++
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFVHGGKVVARGGNEVNVHRNATRHAEFICIDAI 59
Query: 63 ----------AGEEARGATAYVTLEPCSHYG 83
A + T VT+EPC
Sbjct: 60 LATCREKRLPARQLFSEITVVVTVEPCIMCS 90
>gi|297568720|ref|YP_003690064.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924635|gb|ADH85445.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 212
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 10/150 (6%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ +R I+ +L L+ + I P+I LA ++ I
Sbjct: 63 NRIRAIISASGRLPLEQRKIFQIGPRPLIFTAAERAKSLADQAGQRAEVIALPAKDGFLD 122
Query: 278 L---LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------P 328
L L RGV LL+EGG + + R+VD +++ + + G S P
Sbjct: 123 LAAACRKLARRGVKELLLEGGGTLNFHALRQRIVDELLVTIAPKLSGHRAAISLADGAEP 182
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L + +L+ + G + Y
Sbjct: 183 LGDPFLDLQLLSCHPTLNGE-LFCRYRVNK 211
>gi|262341266|ref|YP_003284121.1| dCMP deaminase [Blattabacterium sp. (Blattella germanica) str. Bge]
gi|262272603|gb|ACY40511.1| dCMP deaminase [Blattabacterium sp. (Blattella germanica) str. Bge]
Length = 155
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 22/96 (22%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----------AYGGCP- 53
D +M A+ S+ V +IV+ +I G G
Sbjct: 10 DDIAYMKLAIEQSKLSFCKKKK---VGAVIVQKNQIISCGYNRTPSGFDNICEEKNGVTK 66
Query: 54 ----HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
HAE A+ + + +GA+ YVT PC
Sbjct: 67 WYVIHAEENAILKLSSSSLSCKGASIYVTHFPCQEC 102
>gi|213961866|ref|ZP_03390132.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
sputigena Capno]
gi|213955655|gb|EEB66971.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga
sputigena Capno]
Length = 146
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A+ +++ V ++VKD ++I G G P
Sbjct: 13 DKAYMRMAMEWAKLSYSQRK---QVGAIMVKDRMIISDGY---NGTPTGFDNCCEDEEGN 66
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + + GAT Y+T+ PC
Sbjct: 67 THWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKECS 105
>gi|327285966|ref|XP_003227702.1| PREDICTED: deoxycytidylate deaminase-like [Anolis carolinensis]
Length = 235
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 33 EYFMAVAFLSAQRSK---DPHSQVGACIVNSENKIVGIGY---NGMPNGCSDDSLPWTRT 86
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 87 AESKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 129
>gi|315283757|ref|ZP_07871843.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
marthii FSL S4-120]
gi|313612600|gb|EFR86656.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
marthii FSL S4-120]
Length = 174
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEKDGEHALELEEVTRFGQF 163
Query: 350 VCLEYIG 356
L Y
Sbjct: 164 AQLTYRN 170
>gi|149185197|ref|ZP_01863514.1| CMP/dCMP deaminase, zinc-binding protein [Erythrobacter sp.
SD-21]
gi|148831308|gb|EDL49742.1| CMP/dCMP deaminase, zinc-binding protein [Erythrobacter sp.
SD-21]
Length = 142
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +I +DG +I HAE+ A+ A E +VTLEPC+
Sbjct: 18 PVGAVITRDGAIIAEAHNTPRETCDPTAHAEILAIRRAAEALGQERLTTCELWVTLEPCA 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|189347424|ref|YP_001943953.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
gi|189341571|gb|ACD90974.1| CMP/dCMP deaminase zinc-binding [Chlorobium limicola DSM 245]
Length = 152
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA 63
+M A R + P V ++ +G + GRG HAE+ AL A
Sbjct: 6 FYMEQAFREALKA-YEKKEVP-VGAVVFDSNGNIAGRGHNQVEALSDATAHAEMIALTSA 63
Query: 64 -----GEEARGATAYVTLEPCSHY 82
+ T VT+EPC
Sbjct: 64 MATLGSKYLDACTLAVTMEPCPMC 87
>gi|311743456|ref|ZP_07717262.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
gi|311312586|gb|EFQ82497.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
Length = 250
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 10/226 (4%)
Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199
+ + + D S I+ ++ + +R +D +L+G GT
Sbjct: 25 YPWPVWPADLVWVRAMMVTTLDGAAAGPDGLSGSISSPEDRDVLVAVRRHADVVLIGAGT 84
Query: 200 VLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
+ + + R Q +P +L L D + + PV++ ++
Sbjct: 85 LRGERYSPMTARASDAQQRHEAGQRSAPTLAVLSGSLDLPWDLPVWAGSTHRPVVLSRDD 144
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
DP R ++ D + ++ RG+ ++ EGG ++ + + LVD
Sbjct: 145 ADPGRIATARTHADLVLLPDLAPATIIGALV-ERGLRRIVCEGGPSLLRELMVAGLVDEA 203
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ S + +G S E + F V + Y
Sbjct: 204 DITVSPLFVG-TSQSSVTETMAVPARFRLVHLLESDGTLMARYTKD 248
>gi|12654885|gb|AAH01286.1| DCMP deaminase [Homo sapiens]
Length = 178
Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNEC 113
>gi|62286456|sp|Q5M9G0|DCTD_RAT RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|62286567|sp|Q8K2D6|DCTD_MOUSE RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
gi|21619349|gb|AAH31719.1| Dctd protein [Mus musculus]
gi|26327497|dbj|BAC27492.1| unnamed protein product [Mus musculus]
gi|26333023|dbj|BAC30229.1| unnamed protein product [Mus musculus]
gi|56540886|gb|AAH87138.1| DCMP deaminase [Rattus norvegicus]
Length = 178
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 113
>gi|58389825|ref|XP_317305.2| AGAP008158-PA [Anopheles gambiae str. PEST]
gi|55237525|gb|EAA12688.2| AGAP008158-PA [Anopheles gambiae str. PEST]
Length = 180
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV D ++G G G P
Sbjct: 31 ECFMAMAFLAAKRSK---DPSTQVGACIVNEDNRIVGIGY---NGFPKGCSDDEFPWSKT 84
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAEV A+ + + R T YV L PC+
Sbjct: 85 SDNPLETKYLYVCHAEVNAILNKNSTDVRNCTMYVALFPCNEC 127
>gi|226357352|ref|YP_002787092.1| dCMP deaminase (Deoxycytidylate deaminase) [Deinococcus deserti
VCD115]
gi|226319342|gb|ACO47338.1| putative dCMP deaminase (Deoxycytidylate deaminase) [Deinococcus
deserti VCD115]
Length = 142
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 46/144 (31%), Gaps = 20/144 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-GCP----- 53
M SFD ++ A ++ + V I+ + V+G G G P
Sbjct: 1 MTRPSFDDLGLATARLWASRSA---DSKVQVGACILDRHHRVVGVGYNGRAAGEPNERES 57
Query: 54 ---------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAEV AL A G T YVT EPC+ R ++ +
Sbjct: 58 LDQGHSGFIHAEVNALLAANWNGEGHTLYVTHEPCATCARLIVNSRRVGRVAFASP-YSE 116
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR 128
G + L GI V
Sbjct: 117 TSRVQSGLPSGAEILRSAGIEVQH 140
>gi|281357825|ref|ZP_06244311.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
gi|281315772|gb|EFA99799.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548]
Length = 159
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 33/114 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGC 52
P S+D FM A + VA ++V+D +I G + GGC
Sbjct: 7 PRPSWDQYFMDIAHVAATRSNCSRR---QVAAVLVRDCRIISTGYNGTPRGVRNCSDGGC 63
Query: 53 P------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
P HAE A+ +A G +GAT Y T PC +
Sbjct: 64 PRCNSDAPSGTNLHQCVCSHAEENAIVQAAYHGIAVKGATLYTTFSPCLLCAKM 117
>gi|131888897|ref|NP_001076566.1| tRNA-specific adenosine deaminase 2 [Danio rerio]
gi|55962646|emb|CAI11650.1| novel protein [Danio rerio]
gi|190337669|gb|AAI63783.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
[Danio rerio]
gi|190340014|gb|AAI63804.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
[Danio rerio]
Length = 206
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 27/139 (19%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL--- 60
+M+ A + + G V CL+V + +IG+G HAE+ AL
Sbjct: 24 WMAKAFDMAVEALENGEV----PVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQV 79
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGRSPP------CAQFIIECGIRRVVVCVDD 106
++ E YVT+EPC + +D
Sbjct: 80 LDWCRLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139
Query: 107 PDVRVSGRGLQWLSQKGII 125
+ G + G
Sbjct: 140 SSDHLPHTGTSFKCIAGYR 158
>gi|332982859|ref|YP_004464300.1| tRNA-adenosine deaminase [Mahella australiensis 50-1 BON]
gi|332700537|gb|AEE97478.1| tRNA-adenosine deaminase [Mahella australiensis 50-1 BON]
Length = 156
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
+ ++ K +IGRG G HAE+ A+ +A G Y TLEPC+
Sbjct: 29 PIGAVVAKGDEIIGRGHNQVEGLHDATAHAEMLAIRQAMAAINDWRLDGCELYTTLEPCA 88
Query: 81 HYGRSPPCAQ 90
+ +
Sbjct: 89 MCTGAMMLCR 98
>gi|302794668|ref|XP_002979098.1| hypothetical protein SELMODRAFT_109716 [Selaginella
moellendorffii]
gi|300153416|gb|EFJ20055.1| hypothetical protein SELMODRAFT_109716 [Selaginella
moellendorffii]
Length = 162
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA------------GEEARGATAY 73
V C+IV++G VI G HAE++A++ + G Y
Sbjct: 12 PVGCVIVENGRVIASGSNRTNETRNATRHAEMEAIDMLLPRWECSSHEDFSKRFAGCELY 71
Query: 74 VTLEPCSHY 82
VT EPC
Sbjct: 72 VTCEPCIMC 80
>gi|78045157|ref|YP_361349.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997272|gb|ABB16171.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans
Z-2901]
Length = 170
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + T V ++VKD V+ G
Sbjct: 26 SWDDYFMQ--ITEVVKTR-STCLRRQVGAVLVKDNRVLATGYNGAPKGVPHCEEVGCLRE 82
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+T Y+T +PCS +
Sbjct: 83 QEHVPSGQRHELCRGLHAEQNAIIQAAVYGVSTSGSTIYITHQPCSLCAKM 133
>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
Length = 507
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
V ++V G V+ R G HAE+ L EAG EARG YVTLEPC
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGRLYVTLEPCLMCHH 450
>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
HB27]
gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
HB27]
Length = 507
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84
V ++V G V+ R G HAE+ L EAG EARG YVTLEPC
Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPEARGGRLYVTLEPCLMCHH 450
>gi|319953260|ref|YP_004164527.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola DSM
14237]
gi|319421920|gb|ADV49029.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola DSM
14237]
Length = 146
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 31/108 (28%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M S D ++ A + + V +IVKD ++I G G P
Sbjct: 1 MKDSKQKKYDKAYLRMASEWGKLSFCKRK---QVGAIIVKDRMIISDGY---NGTPTGFE 54
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 55 NQCEDGDGYTKWYVLHAEANAISKVAASTQSCNGATLYITLSPCKECS 102
>gi|314055285|ref|YP_004063623.1| putative CMP/dCMP deaminase zinc-binding [Ostreococcus tauri
virus 2]
gi|313575176|emb|CBI70189.1| putative CMP/dCMP deaminase zinc-binding [Ostreococcus tauri
virus 2]
Length = 136
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S++ FM A + N V C++VK+ +I G + G
Sbjct: 6 SWNEYFMKTA-ELASVRSPCDRLN--VGCVLVKNNRLISMGYNGFLGGSNHTSIVRDGHE 62
Query: 54 ----HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G G Y+T PC +
Sbjct: 63 QATIHAEINAVTDAAKRGVSIDGTEVYITHYPCLNC 98
>gi|163846501|ref|YP_001634545.1| deaminase-reductase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524286|ref|YP_002568757.1| bifunctional deaminase-reductase domain-containing protein
[Chloroflexus sp. Y-400-fl]
gi|163667790|gb|ABY34156.1| bifunctional deaminase-reductase domain protein [Chloroflexus
aurantiacus J-10-fl]
gi|222448165|gb|ACM52431.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
Y-400-fl]
Length = 282
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEE 331
L + G+ +LL EGG + + + L+D + L S I++G P +E
Sbjct: 185 ALAQLRHDYGIRTLLSEGGGRTYGTLLANHLIDEVFLTISPIIVGNPSPPLAPRPGLVEG 244
Query: 332 GYLEKN----FMCVRRDYFGS 348
+
Sbjct: 245 VGFAPQSPPYLRLISLRRVDD 265
>gi|326481151|gb|EGE05161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Trichophyton
equinum CBS 127.97]
Length = 648
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDP 254
CR P +I+DP + S ++ + AP +IV+ +
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503
Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + L +G+ S+++EGG V +N
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563
Query: 305 -SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G G+ + L ++ G DV +
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619
>gi|256820204|ref|YP_003141483.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
gi|256581787|gb|ACU92922.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271]
Length = 146
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A+ +++ V +IVKD ++I G G P
Sbjct: 13 DKAYMCMAMEWAKLSYSQRK---QVGAIIVKDRMIISDGY---NGTPTGFDNCCEDEEGN 66
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + + GAT Y+T+ PC
Sbjct: 67 THWYVLHAEANAIMKVASSTQSSEGATLYITMSPCKECS 105
>gi|218135381|ref|ZP_03464185.1| hypothetical protein BACPEC_03286 [Bacteroides pectinophilus ATCC
43243]
gi|217990766|gb|EEC56777.1| hypothetical protein BACPEC_03286 [Bacteroides pectinophilus ATCC
43243]
Length = 161
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
S+D FM A+ N V IV KD ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPNTQVGACIVSKDNKILSMGYNGLPRGCSDDEFPWCRE 66
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G A YVTL PC+
Sbjct: 67 GDPLDNKYIYTAHSELNAILNYRGGSLENAKIYVTLFPCNEC 108
>gi|167765731|ref|ZP_02437784.1| hypothetical protein CLOSS21_00220 [Clostridium sp. SS2/1]
gi|317497038|ref|ZP_07955366.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167712583|gb|EDS23162.1| hypothetical protein CLOSS21_00220 [Clostridium sp. SS2/1]
gi|291558932|emb|CBL37732.1| Deoxycytidylate deaminase [butyrate-producing bacterium SSC/2]
gi|316895698|gb|EFV17852.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 159
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------AYG 50
S+D FM A+ ++ + V +V D ++ G
Sbjct: 8 SWDQYFMGIAILSAQRSK---DDHTQVGACLVNDHNKILSVGYNGMPIGCNDDDMPWERE 64
Query: 51 GCP---------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G P HAE+ A+ G GA YVTL PC+
Sbjct: 65 GDPLHTKYFYVCHAELNAILNYGGGSLDGARVYVTLFPCNEC 106
>gi|116515096|ref|YP_802725.1| hypothetical protein BCc_160 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256950|gb|ABJ90632.1| tRNA-specific adenosine deaminase [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 153
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
+ S D +M AL+ + G + L++K+ +I + + HAE
Sbjct: 1 MLSIDNYWMKYALKQAYLGKKNGEV----PIGSLLIKNNNLISSAWNSCINLFDASAHAE 56
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYG 83
+ + G+ + YVT EPC
Sbjct: 57 ILVIRNGGKILKNYRLKNTILYVTHEPCFMCS 88
>gi|56963412|ref|YP_175143.1| late competence protein ComEB [Bacillus clausii KSM-K16]
gi|56909655|dbj|BAD64182.1| late competence protein ComEB [Bacillus clausii KSM-K16]
Length = 196
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S+D F++ + S T V IV+D +I G + G
Sbjct: 1 MERISWDQYFLAQSKLLSLRS---TCPRLKVGATIVRDKRIIAGGYNGSVSGSDHCLDKG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAEV AL + G GA Y+T PC H
Sbjct: 58 CYVVDNHCIRTVHAEVNALLQCAKFGVPTAGAEIYITHFPCIHC 101
>gi|116492911|ref|YP_804646.1| deoxycytidylate deaminase [Pediococcus pentosaceus ATCC 25745]
gi|116103061|gb|ABJ68204.1| Deoxycytidylate deaminase [Pediococcus pentosaceus ATCC 25745]
Length = 160
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM+ A S T T SV +IV+D VI G
Sbjct: 6 DWDQYFMTQATLLSLRS---TCTRLSVGAVIVRDRRVIAGGYNGSVSGDVHCIDEGCYLV 62
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 63 EGHCVRTIHAEMNAVLQCAKFGVATDGAEVYVTDFPCLQCTKM 105
>gi|319946726|ref|ZP_08020960.1| competence protein comEB [Streptococcus australis ATCC 700641]
gi|319746774|gb|EFV99033.1| competence protein comEB [Streptococcus australis ATCC 700641]
Length = 163
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 24/99 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
++D F + AL S + V ++VKD V+ G
Sbjct: 15 AWDEYFAAQALLISNRATCKRAK---VGAVLVKDHKVVATGYNGSVSGTEHCLDHDCLMV 71
Query: 48 --AYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAEV A+ + E +G TAYVT PC +
Sbjct: 72 EGHCVRTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNC 110
>gi|34541467|ref|NP_905946.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
gi|188995653|ref|YP_001929905.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
33277]
gi|34397784|gb|AAQ66845.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas
gingivalis W83]
gi|188595333|dbj|BAG34308.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC
33277]
Length = 151
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A ++ V LIVK+ ++I G G P
Sbjct: 14 ELDKRYLRMARIWAENSYCERRK---VGALIVKEQMIISDGY---NGTPAGFENICEDEN 67
Query: 54 --------HAEVQALEEAG---EEARGATAYVTLEPCSHY 82
HAE A+ + + GAT Y+T PC
Sbjct: 68 NVTKPYVLHAEANAITKVAGSTNNSSGATIYITAAPCIEC 107
>gi|290954851|ref|YP_003486033.1| nucleotide deaminase [Streptomyces scabiei 87.22]
gi|260644377|emb|CBG67462.1| putative nucleotide deaminase [Streptomyces scabiei 87.22]
Length = 182
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M+ A+R + V P +I++DG +I RG HAEV+A+ +A +
Sbjct: 1 MTEAVRLATESVNGGWGGP-FGAVIIRDGEIISRGQNRVLLTGDPTAHAEVEAIRKAVQR 59
Query: 67 AR 68
Sbjct: 60 LN 61
>gi|258539694|ref|YP_003174193.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus rhamnosus Lc
705]
gi|257151370|emb|CAR90342.1| CMP/dCMP deaminase, zinc-binding protein [Lactobacillus rhamnosus
Lc 705]
gi|328480168|gb|EGF49113.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus rhamnosus
MTCC 5462]
Length = 154
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP---------- 53
S+D F+ A + S +T V ++V++ +I G G P
Sbjct: 16 SWDHYFLELAKKVSERSTCERAT---VGAVLVQEHRIIATGYNGAISGDPHCDEAGHLMR 72
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YV PC +
Sbjct: 73 DGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLNC 112
>gi|241563436|ref|XP_002401703.1| conserved hypothetical protein [Ixodes scapularis]
gi|215501895|gb|EEC11389.1| conserved hypothetical protein [Ixodes scapularis]
Length = 159
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+F+ FM AL+ +R N V +IV + +I HAE+
Sbjct: 10 NFNNFFMEQALKQARIAF---DKNEVPVGAVIVDRLNQKIIASTHNNTEEKNNALCHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLE C+
Sbjct: 67 IAINEACNLIYSKNLNDYDIYVTLESCAMC 96
>gi|326470312|gb|EGD94321.1| riboflavin-specific deaminase [Trichophyton tonsurans CBS 112818]
Length = 648
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L
Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDP 254
CR P +I+DP + S ++ + AP +IV+ +
Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503
Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + L +G+ S+++EGG V +N
Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563
Query: 305 -SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G G+ + L ++ G DV +
Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619
>gi|308181501|ref|YP_003925629.1| reductase (putative) [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308046992|gb|ADN99535.1| reductase (putative) [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 179
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ + ++ + + K++ L ++ + G
Sbjct: 56 YTMEQTTDQLINPYNPATHNIVMTSHPHTGDERTQFTNTPVTKIVEDLRRTAGKNIWIVG 115
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA V + + LVD + + + +++G GIP + ++ F V + +G + Y
Sbjct: 116 GAGVLMPLLAADLVDELYIQIAPVILG-DGIPLF-KAIDQQQRFELVDTNRYGQLAEVHY 173
Query: 355 IG 356
Sbjct: 174 QR 175
>gi|256391606|ref|YP_003113170.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
gi|256357832|gb|ACU71329.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
Length = 164
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNP---SVACLIVK-DGIVIGRGVTAYGGCP-HAEVQALE 61
D ++S A+ + P +V LIV D + RG + HAE AL
Sbjct: 18 DREWLSTAVDLAWR----CPPAPGAFNVGALIVDADDRELARGWSRDTDEHVHAEESALN 73
Query: 62 EAGE---EARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116
G GAT Y +LEPC R C Q II GIRRVV +P + +G
Sbjct: 74 TLGPNHPRLSGATVYSSLEPCSIRKSRPLTCTQLIIASGIRRVVFAWREPSLLVEDCQGA 133
Query: 117 QWLSQKGIIV 126
+ L + GI V
Sbjct: 134 ELLREAGIEV 143
>gi|320165206|gb|EFW42105.1| deoxycytidylate deaminase [Capsaspora owczarzaki ATCC 30864]
Length = 192
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------- 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 40 YFMAVAFLSAQRSK---DPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWARTAESP 96
Query: 54 ---------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + + +G T YV L PC+
Sbjct: 97 LDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNEC 135
>gi|258653701|ref|YP_003202857.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258556926|gb|ACV79868.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 253
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 27/75 (36%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
RG+ + EGG A+ I L+D L + +++G + +
Sbjct: 177 ADRGLGRIHCEGGPALLGDLIARDLLDECCLTIAPVLLGSAATRLLPIDLAAPVAWTPAL 236
Query: 343 RDYFGSDVCLEYIGK 357
G+ + Y+ +
Sbjct: 237 LRIGGAHLFARYLRE 251
>gi|28379302|ref|NP_786194.1| reductase (putative) [Lactobacillus plantarum WCFS1]
gi|300766764|ref|ZP_07076679.1| dihydrofolate reductase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|28272141|emb|CAD65045.1| reductase (putative) [Lactobacillus plantarum WCFS1]
gi|300495672|gb|EFK30825.1| dihydrofolate reductase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 179
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
++ + ++ + + K++ L ++ + G
Sbjct: 56 YTMEQTTDQLINPYNPATHNIVMTSHPHTGDERTQFTNTPVTKIVEDLRRTAGKNIWIVG 115
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA V + + LVD + + + +++G GIP + ++ F V + +G + Y
Sbjct: 116 GAGVLMPLLAADLVDELYIQIAPVILG-DGIPLF-KAIDQQQRFELVDTNRYGQLAEVHY 173
Query: 355 IG 356
Sbjct: 174 QR 175
>gi|327356422|gb|EGE85279.1| tRNA specific adenosine deaminase [Ajellomyces dermatitidis ATCC
18188]
Length = 174
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE----- 66
+ G T V C++V + VIG G+ + G HAE A+EE
Sbjct: 6 EEA-LASGET----PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRSHPRSI 60
Query: 67 ARGATAYVTLEPCSHY 82
R YVT+EPC
Sbjct: 61 FRETDLYVTVEPCIMC 76
>gi|260777313|ref|ZP_05886207.1| putative deoxycytidylate deaminase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606979|gb|EEX33253.1| putative deoxycytidylate deaminase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 150
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 21/143 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G---------- 51
+S + RF A+ W + V +I K ++ G Y G
Sbjct: 2 ISKWAQRFYQMAVLVGSWSK---DPSTQVGAVITKQNRIVSVGFNGYPHGISDSAMTDER 58
Query: 52 ------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE A+ A + G +VT PC + +
Sbjct: 59 EMKYLKTLHAEENAILFAKRDLDGCEIWVTHFPCPNCAAKIIQTGISAVHCPEQTE-DFL 117
Query: 106 DPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ V+
Sbjct: 118 SRWGEKIKISQDMFLQAGVKVNW 140
>gi|218780678|ref|YP_002431996.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
AK-01]
gi|218762062|gb|ACL04528.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
AK-01]
Length = 156
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGG----CPHAEVQ 58
+++M AL ++ V ++V ++I + G HAE+
Sbjct: 2 EKHSKYMQMALDEAKTAWDEDEV--PVGAVLVLPDQDLII-KAHNRTIGLNDAAAHAEIL 58
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
AL EAG + Y T+EPC
Sbjct: 59 ALREAGRVIGNYRLLNSVLYCTVEPCIMC 87
>gi|238859561|ref|NP_001013904.2| deoxycytidylate deaminase isoform 1 [Rattus norvegicus]
gi|149021459|gb|EDL78922.1| similar to 6030466N05Rik protein, isoform CRA_a [Rattus norvegicus]
gi|149021460|gb|EDL78923.1| similar to 6030466N05Rik protein, isoform CRA_a [Rattus norvegicus]
Length = 184
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 23 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 76
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 77 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 119
>gi|194016099|ref|ZP_03054714.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
pumilus ATCC 7061]
gi|194012454|gb|EDW22021.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
pumilus ATCC 7061]
Length = 180
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L + + GG + FI + LVD + L + ++IG GIP +E
Sbjct: 99 FMKKLKHEEGQHIWIVGGGELLQFFIKAGLVDELYLQIAPVMIG-RGIPLF-SPADIESR 156
Query: 338 FMCVRRDYFGSDVCLEYIGKNL 359
F + L ++ K
Sbjct: 157 FSLKEVKQYKQIAELHFVLKEE 178
>gi|298293742|ref|YP_003695681.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
gi|296930253|gb|ADH91062.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
Length = 240
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 4 SSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HA 55
S A+FM A R + G +IVKDG +IGRG G P HA
Sbjct: 52 SPDKAKFMEEATRLAIESVEKGWGG-----PFGAVIVKDGEIIGRGQNRVLLTGIPVFHA 106
Query: 56 EVQALEEAGEEAR 68
E+ A+ +A
Sbjct: 107 EITAIMDASARLN 119
>gi|52841362|ref|YP_095161.1| cytidine/deoxycytidylate deaminase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54294070|ref|YP_126485.1| hypothetical protein lpl1134 [Legionella pneumophila str. Lens]
gi|54297084|ref|YP_123453.1| hypothetical protein lpp1129 [Legionella pneumophila str. Paris]
gi|52628473|gb|AAU27214.1| cytidine/deoxycytidylate deaminase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53750869|emb|CAH12280.1| hypothetical protein lpp1129 [Legionella pneumophila str. Paris]
gi|53753902|emb|CAH15373.1| hypothetical protein lpl1134 [Legionella pneumophila str. Lens]
Length = 154
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 14/157 (8%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
F+ + +R +VG ACLIV++G ++ HAEV A+ A
Sbjct: 3 FIKRTIELARENVGHGGR--PFACLIVQNGKILAEATNTVAQTHDPTAHAEVNAIRIATA 60
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E Y+ PC + + + + V R L
Sbjct: 61 KLGCEHLYDCDFYILAHPCPMC---LAAMYYCSPRKVIFITTRDEYKTYYVDDRKYFTLE 117
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+++ H +E K +
Sbjct: 118 NFYQEINKPWRERKMPMEHRPDKEAIEVYKMHQKKKS 154
>gi|46128753|ref|XP_388930.1| hypothetical protein FG08754.1 [Gibberella zeae PH-1]
Length = 167
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 47/142 (33%), Gaps = 22/142 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEVQALEEA 63
M AL + TN V LIV+ D +I G T G HAE L +
Sbjct: 9 HKAAMQRALELANNSPPK-PTNFRVGALIVRLSDDTIIAEGYTLELPGNTHAEETCLMKL 67
Query: 64 GEEARGAT-------------AYVTLEPCSHY--GRSPPCAQFIIE--CGIRRVVVCVDD 106
E+ G T Y T+EPC G+ P + + + + V +
Sbjct: 68 AEQY-GTTEEKLSEVFNTPHALYTTVEPCFKRLSGKLPCVERVLRQKSWITQVYVGVQEP 126
Query: 107 PDVRVSGRGLQWLSQKGIIVDR 128
G + L GI +
Sbjct: 127 ETFVGENTGRKTLEDAGIEIRH 148
>gi|26346577|dbj|BAC36937.1| unnamed protein product [Mus musculus]
Length = 178
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 17 EYFMAVAFLSAQRSK---DPSFQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 70
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 71 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 113
>gi|46447463|ref|YP_008828.1| hypothetical protein pc1829 [Candidatus Protochlamydia
amoebophila UWE25]
gi|46401104|emb|CAF24553.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 156
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAG 64
+M A+ + + IV K G ++ HAE+ + EA
Sbjct: 4 YMRRAIESAYEGIDK-DEGGPFGACIVDKQGQILAVTHNTVLKDQDPTCHAEMNCIREAA 62
Query: 65 EEAR-----GATAYVTLEPCSHY 82
+ G T + T EPC
Sbjct: 63 RRLKTHILSGYTLFTTAEPCPMC 85
>gi|311031602|ref|ZP_07709692.1| hypothetical protein Bm3-1_13811 [Bacillus sp. m3-13]
Length = 190
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------ 51
S+D FM+ + + T T +V IV+D +I G + G
Sbjct: 6 SWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGVHCIDEGCYVI 62
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GA YVT PC H
Sbjct: 63 DNHCVRTIHAEMNALLQCSKFGVPTTGAEIYVTHFPCLHC 102
>gi|307107941|gb|EFN56182.1| hypothetical protein CHLNCDRAFT_13299 [Chlorella variabilis]
Length = 118
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---------------- 47
S+D FM+ A ++ N V IV VI G G
Sbjct: 9 SWDDYFMAVAFLSAQRSK---DPNKQVGACIVDRNNVICGIGYNGFPRGCPDSKLPWAKK 65
Query: 48 AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
+ G P HAE+ A+ + G GA +VT+ PC+
Sbjct: 66 SRRGDPLDTKYPYVCHAEMNAILNKNGASVEGAKVFVTMFPCNEC 110
>gi|213401993|ref|XP_002171769.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Schizosaccharomyces japonicus yFS275]
gi|211999816|gb|EEB05476.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Schizosaccharomyces japonicus yFS275]
Length = 244
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
L L G+ L+VEGGA + + S VD+ I+ S + S +
Sbjct: 162 RFHEYVALDQLRELGIRRLMVEGGARLLSHALKSECVDAAIVTISPQFV---DPLSTIGI 218
Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGK 357
N+ C + FG DV E +
Sbjct: 219 DAPSLNWPCKSWEMFGDDVVFEGRRR 244
>gi|87131002|gb|ABD24095.1| cytosine deaminase [Clavispora lusitaniae]
Length = 153
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
MP D M A ++ P LI +DG ++GRG H E
Sbjct: 1 MPF--DDKLGMQIAFEEAQKGYAE-GGIPIGGALIHEDGTILGRGHNMRIQKNSATLHGE 57
Query: 57 VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPCA 89
+ LE AG + T Y TL PC +
Sbjct: 58 ISTLENAGRLPGGVYKNCTMYTTLSPCHMCSGACLMY 94
>gi|148254187|ref|YP_001238772.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bradyrhizobium sp. BTAi1]
gi|146406360|gb|ABQ34866.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bradyrhizobium sp. BTAi1]
Length = 239
Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + GV LL+EGG +F+ + LVD L + G G PS + E
Sbjct: 139 VLDVLARELGVKRLLLEGGGGANGAFLRAGLVDEFNLVLCPAIDGAKGAPSVFDSPESES 198
Query: 337 N-------FMCVRRDYF-GSDVCLEY 354
+ G + L Y
Sbjct: 199 DQRAPITSMTLESSTALAGGALWLRY 224
>gi|195056037|ref|XP_001994919.1| GH13454 [Drosophila grimshawi]
gi|193892682|gb|EDV91548.1| GH13454 [Drosophila grimshawi]
Length = 160
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 19/124 (15%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ + D VI RG HAE +
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFIHDDKVIARGGNEVNVHRNATRHAEFICI--- 56
Query: 64 GEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT Y + + + + V+ G +
Sbjct: 57 -----DATLAYCREKRLPARQVFSEISVVVTVEPCIMCSAALHTLAVKEIIYGCENDRFG 111
Query: 123 GIIV 126
G V
Sbjct: 112 GKSV 115
>gi|153956292|ref|YP_001397057.1| deaminase [Clostridium kluyveri DSM 555]
gi|219856609|ref|YP_002473731.1| hypothetical protein CKR_3266 [Clostridium kluyveri NBRC 12016]
gi|146349150|gb|EDK35686.1| Predicted deaminase [Clostridium kluyveri DSM 555]
gi|219570333|dbj|BAH08317.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 141
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 29/101 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D F+ A + + T V ++VK+ + G G G P
Sbjct: 7 DWDNYFIDIAFQVAERS---TCPRLHVGAVLVKNRRIKGTGY---NGSPRGLEHCDEAGC 60
Query: 54 -----------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAEV L E ++ +T YVT PC
Sbjct: 61 YMKDNHCIRTIHAEVNCLLEVSPDDRENSTLYVTHMPCPEC 101
>gi|320354083|ref|YP_004195422.1| CMP/dCMP deaminase zinc-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320122585|gb|ADW18131.1| CMP/dCMP deaminase zinc-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 173
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP----HAE 56
+ S +FM+ AL +R + V C +V + ++ RG + G HAE
Sbjct: 1 MMSEHEQFMAVALEEARLALAEGEF--PVGCAMVANNGIVARGRRHNSIEGYRNEIDHAE 58
Query: 57 VQALE-----EAGEEARGATAYVTLEPCSHY 82
V L + G + T Y T+EPC
Sbjct: 59 VVTLRRLIAEQPGLDLATVTVYTTMEPCLMC 89
>gi|330466554|ref|YP_004404297.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
AB-18-032]
gi|328809525|gb|AEB43697.1| hypothetical protein VAB18032_12915 [Verrucosispora maris
AB-18-032]
Length = 248
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 1/157 (0%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + D+ R P +++ L A + P+++ +
Sbjct: 87 GYRALRLDEQRRAWRRRHGLAEYPTLVVVSNSLDLDPTQAAFADAPVRPMVLTRDGAPAA 146
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
LA ++ + L + RG +L EGG + + + LVD + L
Sbjct: 147 PGLAAVADLVHCGTDEVDLAVGLAELR-RRGFDQVLCEGGPHLFGALTAADLVDEVCLSV 205
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ ++ G G + G L
Sbjct: 206 APLLAGAGAGRITAGTPSPARQLPLRHVLLAGDGTLL 242
>gi|169234864|ref|NP_001108500.1| deaminase domain containing 1 [Rattus norvegicus]
gi|165970946|gb|AAI58617.1| Deadc1 protein [Rattus norvegicus]
Length = 191
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+R ++ + V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMRMAKEALENIEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
YVT+EPC
Sbjct: 81 LDWCHRHGQSPSAVFEHTVLYVTVEPCIMC 110
>gi|118404850|ref|NP_001072562.1| tRNA-specific adenosine deaminase 2 [Xenopus (Silurana)
tropicalis]
gi|123905851|sp|Q0P4H0|ADAT2_XENTR RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
gi|112419108|gb|AAI22085.1| deaminase domain containing 1 [Xenopus (Silurana) tropicalis]
Length = 170
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
++ +M A + ++ + G V CL+V D V+G+G HAE
Sbjct: 1 MTEEIQNWMHKAFQMAQDALNNGEV----PVGCLMVYDNQVVGKGRNEVNETKNATRHAE 56
Query: 57 VQAL-----------EEAGEEARGATAYVTLEPCSHY 82
+ A+ +++ + YVT+EPC
Sbjct: 57 MVAIDQVLDWCEKNSKKSRDVFENIVLYVTVEPCIMC 93
>gi|260892001|ref|YP_003238098.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
gi|260864142|gb|ACX51248.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4]
Length = 162
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 32/111 (28%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+D FM+ A S T V + +D ++ G
Sbjct: 4 DWDTYFMTVAKVVSLRS---TCLRRQVGACLTRDNRILATGYNGAPSGLKHCLEIGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE AL +A G GAT Y T PC+ +
Sbjct: 61 EKGIPSGERHELCRGLHAEQNALLQAAVYGVSIAGATLYTTHFPCALCAKM 111
>gi|239983056|ref|ZP_04705580.1| hypothetical protein SalbJ_26719 [Streptomyces albus J1074]
gi|291454887|ref|ZP_06594277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
albus J1074]
gi|291357836|gb|EFE84738.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
albus J1074]
Length = 260
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G+T LL EGG + F+ + ++D + L S ++ G+ + L K F
Sbjct: 176 AEHGLTRLLTEGGPRLLGQFVAAGVLDELCLTVSPMLTSGDAQRIAGGPSVALPKRFSPA 235
Query: 342 RRDYFGSDVCLEYIGKNL 359
+ Y ++
Sbjct: 236 SVLEEAGFLFTRYRRTDI 253
>gi|237653124|ref|YP_002889438.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
gi|237624371|gb|ACR01061.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T]
Length = 290
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
S D I A S I ++ +H LRA DA++VG+GTV ADDP+LT R
Sbjct: 78 GQSLDGRIATASGASHYINCLEARTHLHRLRALVDAVVVGVGTVNADDPQLTVRHVA--G 135
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCR 273
+P+R++LDP + D+++ + V +V E+ P A +
Sbjct: 136 RNPVRVVLDPRGRARADARLFQDGAAPTVHLVGEDLAPGTAAVLPGRVARAGLPGAGSGF 195
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ +L L G +LVEGG F+ + ++ + L + ++IG G L
Sbjct: 196 EPGAVLDWLARAGCRRVLVEGGGHTVSRFVQAGAIERLHLLVAPLLIGSGRAGLVLPPID 255
Query: 334 -LEKNFMCV-RRDYFGSDVCLEY 354
L++ V R GSD +
Sbjct: 256 TLDEALRPVCRPFRCGSDSLFDL 278
>gi|199598395|ref|ZP_03211814.1| ComE operon protein 2 [Lactobacillus rhamnosus HN001]
gi|258508483|ref|YP_003171234.1| CMP/dCMP deaminase [Lactobacillus rhamnosus GG]
gi|199590714|gb|EDY98801.1| ComE operon protein 2 [Lactobacillus rhamnosus HN001]
gi|257148410|emb|CAR87383.1| CMP/dCMP deaminase, zinc-binding protein [Lactobacillus rhamnosus
GG]
gi|259649793|dbj|BAI41955.1| competence protein [Lactobacillus rhamnosus GG]
Length = 154
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP---------- 53
S+D F+ A + S +T V ++V++ +I G G P
Sbjct: 16 SWDHYFLELAKKVSERSTCERAT---VGAVLVQEHRIIATGYNGAISGDPHCDEAGHLMR 72
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GAT YV PC +
Sbjct: 73 DGHCIRTIHAEMNAIIQCAANGVSTHGATVYVNFFPCLNC 112
>gi|300853441|ref|YP_003778425.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
gi|300433556|gb|ADK13323.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528]
Length = 136
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 29/101 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D F+ A + + T V ++VK+ + G G G P
Sbjct: 4 DWDNYFIDIAFKVAERS---TCPRLHVGAVLVKNRRIKGTGY---NGSPRGLEHCEDVGC 57
Query: 54 -----------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
HAEV L E A ++ +T YVT PC
Sbjct: 58 YMKNNHCVRTIHAEVNCLLEVAPDDRESSTLYVTHMPCPEC 98
>gi|259502690|ref|ZP_05745592.1| tRNA-specific adenosine deaminase [Lactobacillus antri DSM 16041]
gi|259169335|gb|EEW53830.1| tRNA-specific adenosine deaminase [Lactobacillus antri DSM 16041]
Length = 173
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
+ ++VKD +IGRG HAE+ A+ EA E G YVTLEPC
Sbjct: 35 PIGAVVVKDQQIIGRGHNMREHFQDVTYHAEMLAIMEACERLHSWRLEGCDLYVTLEPCI 94
Query: 81 HYG 83
Sbjct: 95 MCS 97
>gi|150024567|ref|YP_001295393.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
gi|149771108|emb|CAL42575.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86]
Length = 142
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 22/101 (21%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----------AYG 50
+ +D ++ A +S+ V +IV+D ++I G
Sbjct: 5 KQNKYDKAYLRLAKEWSKLSYCNRK---QVGAIIVRDKMIISDGYNGSPSGFENCCEEQD 61
Query: 51 GCP-----HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
G HAE A+ + + GAT Y+TL PC
Sbjct: 62 GTTKWYILHAEANAILKVARSTQSCEGATLYITLSPCKECS 102
>gi|121702783|ref|XP_001269656.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
gi|119397799|gb|EAW08230.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1]
Length = 148
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAGEEA- 67
A+ ++ + + +V KDG ++GRG G HAE+ ALE++G
Sbjct: 10 AVEEAKKGLAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMAALEDSGRLPG 67
Query: 68 ---RGATAYVTLEPCSHYGRSPPCAQ 90
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGACILYN 93
>gi|305665639|ref|YP_003861926.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
gi|88710395|gb|EAR02627.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170]
Length = 147
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 31/108 (28%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M + D ++ A + + V ++VKD ++I G G P
Sbjct: 1 MKKTKQEKYDKAYLRMAQEWGKLSFCERK---QVGAIVVKDRMIISDGY---NGTPTGFE 54
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 55 NVCEDEEGYTKWYVLHAEANAISKVASSTQSCEGATLYITLSPCRECS 102
>gi|150388180|ref|YP_001318229.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
QYMF]
gi|149948042|gb|ABR46570.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens
QYMF]
Length = 146
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A T V ++VKD V+ G
Sbjct: 4 SWDQYFMEMAEVVKTRS---TCMRRQVGAVVVKDKRVLSSGYNGAPSGIEHCEKTGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G E +G T YVTL+PC +
Sbjct: 61 QLGVPSGERHELCRGLHAEQNAIIQAAYHGVEIQGTTLYVTLQPCVLCAKM 111
>gi|111224596|ref|YP_715390.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
gi|111152128|emb|CAJ63855.1| Putative riboflavin/cytosine deaminase [Frankia alni ACN14a]
Length = 187
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 33/153 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALE 61
D +++ A+ R +ST SV LIV DG + G + P HAE AL
Sbjct: 17 DRDRYWLARAVELGRR-CPPSSTAYSVGALIVAADGTPLAEGY-SRAEEPHDHAEEVALR 74
Query: 62 EAGEEAR---------------------------GATAYVTLEPCSHYGRSP-PCAQFII 93
GAT Y +LEPCS P C + I+
Sbjct: 75 RLAARLDASAAGGDPGGGVDSGGGGDPGVGVDPAGATVYSSLEPCSARASRPWTCTELIL 134
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
GI RVV +P + V G + L+ G+ V
Sbjct: 135 AAGIGRVVFAWREPSLFVDCDGAERLAAAGVEV 167
>gi|238486578|ref|XP_002374527.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
gi|317144152|ref|XP_001819938.2| cytosine deaminase [Aspergillus oryzae RIB40]
gi|220699406|gb|EED55745.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
Length = 148
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA- 67
AL ++ + +V KDG ++GRG HAE+ ALE +G
Sbjct: 10 ALEEAKQGYAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|170077123|ref|YP_001733761.1| riboflavin biosynthesis protein RibD domain-containing protein
[Synechococcus sp. PCC 7002]
gi|169884792|gb|ACA98505.1| RibD C-terminal domain [Synechococcus sp. PCC 7002]
Length = 224
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 14/225 (6%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD- 203
+R +T A+S D I K + L AQ DA++ G T+ A
Sbjct: 1 MHRQRPLVTAIAAMSADGKIADYSGAPARFPSAQDKAHLERLIAQMDAVMFGANTLRAYG 60
Query: 204 -------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
L R + Q P+ + L D + L ++ E
Sbjct: 61 TSLPIGDRHLLQQRQDRHQPPQPIHFVCSGSGNLPQDLPFFRQPLRRGLLTAPEQLPRWA 120
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
++ I + LT L RG+ L + GG + SF +D + L
Sbjct: 121 EFPGFEQIIALDSAGAWQPT--LTELRQRGIEKLGLLGGGNLIASFAEQGCLDELWLTVC 178
Query: 317 QIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGK 357
+++G P+P+ + + + S++ L Y K
Sbjct: 179 PVLLGGTAAPTPMAGNGFLQTAGLTLELLEYEAIASELFLHYRMK 223
>gi|15828749|ref|NP_326109.1| deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma pulmonis UAB
CTIP]
gi|14089691|emb|CAC13451.1| DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE) [Mycoplasma pulmonis]
Length = 154
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 36/132 (27%), Gaps = 31/132 (23%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP------- 53
+ +D FM A S N V I+ D VI G G P
Sbjct: 5 KIIDWDEYFMLLAKVSSLRSK---DPNTRVGACIINDKKRVIALGY---NGMPLGNDFFP 58
Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE+ A+ A Y TL PCS+ ++
Sbjct: 59 WSKDAENEKDKKYAYVIHAELNAILNTTTLLENAVLYTTLFPCSNCAKTITQTGIKEIVY 118
Query: 97 IRRVVVCVDDPD 108
+ +D
Sbjct: 119 EQDFYHDTEDAW 130
>gi|289705117|ref|ZP_06501521.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Micrococcus luteus SK58]
gi|289558145|gb|EFD51432.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Micrococcus luteus SK58]
Length = 263
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--EGGIPSPLEEGYLEKNFMC 340
RG + EGG + S + LVD ++L + ++ G G + + + L
Sbjct: 176 HARGARVVHCEGGPRLFGSLAAAGLVDEVLLTVAPLLAGPAPGRVLTGEDGPGLPSRLQL 235
Query: 341 VRRDYFGSDVCLEY 354
V+ + + L
Sbjct: 236 VQVLHDDGMLFLRL 249
>gi|81429276|ref|YP_396277.1| putative dihydrofolate reductase [Lactobacillus sakei subsp. sakei
23K]
gi|78610919|emb|CAI55971.1| Putative dihydrofolate reductase [Lactobacillus sakei subsp. sakei
23K]
Length = 179
Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ + GGA + ++LVD +I+ + +++G+G S + + + G
Sbjct: 112 NIWLVGGAETFTMLLKAQLVDELIITIAPVLLGDG--ISLISTHLTDMPLELSKTRQLGQ 169
Query: 349 DVCLEY 354
V L Y
Sbjct: 170 FVELTY 175
>gi|296411775|ref|XP_002835605.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629391|emb|CAZ79762.1| unnamed protein product [Tuber melanosporum]
Length = 259
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI-- 325
L + G+ S++VEGG V + + VDS+I+ + +G+GG+
Sbjct: 161 RRWSWDVLSEKMRAFGLNSVMVEGGGGVINDLLAEGNLPHVDSVIVTVAPTYLGQGGVNV 220
Query: 326 ------PSPLEEGYLEKNFMCVRRDYFGSD 349
+ + F V G D
Sbjct: 221 SPSAVLSTADGKRTSAVKFRDVEWRILGRD 250
>gi|30022404|ref|NP_834035.1| ComE operon protein 2 [Bacillus cereus ATCC 14579]
gi|29897962|gb|AAP11236.1| ComE operon protein 2 [Bacillus cereus ATCC 14579]
Length = 182
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|325680619|ref|ZP_08160161.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
gi|324107689|gb|EGC01963.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Ruminococcus albus 8]
Length = 156
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY-GGC---PHAEVQAL 60
D +M + V ++VK G ++GRG G HAE+ A+
Sbjct: 4 DEMYMRK--ALELAALAAEEDEVPVGAVVVKKSTGEIVGRGFNRREYGRSPLTHAEIVAI 61
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
E+A + G +VTLEPC
Sbjct: 62 EQASRKLGGWRLIDCELFVTLEPCPMC 88
>gi|120437804|ref|YP_863490.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
gi|117579954|emb|CAL68423.1| cytidine/deoxycytidylate deaminase family protein [Gramella
forsetii KT0803]
Length = 143
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
FD ++ A +S+ V LIVKD ++I G G P
Sbjct: 8 KFDKAYLRIAREWSKLSHCNRK---QVGALIVKDRMIISDGY---NGTPTGFENFCEDEE 61
Query: 54 --------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + + AT Y+T+ PC
Sbjct: 62 GYTKWYVLHAEANAILKVAGSTQSCKDATLYITMSPCKECS 102
>gi|288928373|ref|ZP_06422220.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 317 str. F0108]
gi|288331207|gb|EFC69791.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp.
oral taxon 317 str. F0108]
Length = 146
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 28/104 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ + V L+VKD ++I G G P
Sbjct: 6 KQTILDLRYLRMARIWAENSYCVRRK---VGALVVKDKMIISDGY---NGTPSGFENVCE 59
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE A+ + + G+T YVT PC
Sbjct: 60 DDNNVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIECS 103
>gi|310815143|ref|YP_003963107.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
Y25]
gi|308753878|gb|ADO41807.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare
Y25]
Length = 324
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 64/307 (20%), Positives = 96/307 (31%), Gaps = 44/307 (14%)
Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA-----TAYVT 75
G T+ NP V C I+ G V+ G +AL A A G T VT
Sbjct: 25 QGATAPNPPVGCAILDSKGAVLAVAAHQKAGSA--HAEALAIAACRAAGTYDQIDTFVVT 82
Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
LEPC+H+GR+ PC I++ RRV + DP+ RV+G G L G+ V
Sbjct: 83 LEPCNHHGRTAPCTDAILQTPARRVFIGARDPNPRVAGGGTARLRAAGLAVYDWQALGMA 142
Query: 136 IFLH---------AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+ R + R IT+K V + + +
Sbjct: 143 GTCTGIGADALIAPFRKRVLTGRPWITVKQVVDAGGSMIPPAGRKTFARQSSLELAHAMR 202
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
R + + L +H ++LD ++
Sbjct: 203 RRAEVIVTGAGTVLADWPLFTVRHLADFPDHRRALVVLDRRGRVP--------------- 247
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ D R L L T +LVE G + + + S
Sbjct: 248 ------------TRYLTDAQTRGFDARIATDLAEALHDPRATEVLVEAGPILTDAVLQSA 295
Query: 307 LVDSIIL 313
L D +L
Sbjct: 296 LWDQHVL 302
>gi|312215394|emb|CBX95346.1| similar to cytosine deaminase [Leptosphaeria maculans]
Length = 152
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEV 57
+SS D F AAL +R G + + +V G ++GRG HAE+
Sbjct: 1 MSSADIGF-QAALEEAR--TGSSEGGLPIGACLVSAQGKILGRGHNMRIQRGSATLHAEI 57
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHYGRSP 86
ALE AG + AT Y TL PC +
Sbjct: 58 SALERAGRLPASAYQDATMYTTLSPCDMCTGAC 90
>gi|312880695|ref|ZP_07740495.1| CMP/dCMP deaminase zinc-binding [Aminomonas paucivorans DSM 12260]
gi|310783986|gb|EFQ24384.1| CMP/dCMP deaminase zinc-binding [Aminomonas paucivorans DSM 12260]
Length = 170
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 33/107 (30%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+D F+ AL + T V +IV+D ++ G
Sbjct: 8 WDEYFLRIALVVASRS---TCLRRHVGAVIVRDHYMVSTGYNGAPRGVPHCAEVGCLRER 64
Query: 47 --------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
H E+ AL +A G G Y T EPCS
Sbjct: 65 LGIPSGERHEMCRGSHGEINALSQAAAMGVSTAGGILYCTHEPCSFC 111
>gi|256616995|ref|ZP_05473841.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
4200]
gi|256596522|gb|EEU15698.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC
4200]
Length = 151
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 25/107 (23%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP----- 53
M +D FM ++ S T T +V IV+D +I G GG
Sbjct: 1 MERIPWDQYFMGQSVLLSLRS---TCTRLTVGATIVRDKRIIAGGYNGSVSGGTHCIDEG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 58 CYVVDNHCVRTIHAEMNAILQCAKFGVPTEGAEIYVTHFPCLQCTKM 104
>gi|120405702|ref|YP_955531.1| hypothetical protein Mvan_4752 [Mycobacterium vanbaalenii PYR-1]
gi|119958520|gb|ABM15525.1| bifunctional deaminase-reductase domain protein [Mycobacterium
vanbaalenii PYR-1]
Length = 234
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG- 321
+ + + D+ + + L +G +L EGG + + + + LVD + + + + G
Sbjct: 138 CEVMVCGDEQVDVAEAVRRLRAQGSHRILCEGGPTLLNELVEADLVDELCVTLAPRLAGS 197
Query: 322 ---EGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
G P+ D V L+Y+
Sbjct: 198 QPLGAGRPA---RLTSPPGLRLAHILAGTDDYVYLKYVRP 234
>gi|58336551|ref|YP_193136.1| dCMP deaminase [Lactobacillus acidophilus NCFM]
gi|227903102|ref|ZP_04020907.1| competence protein ComEB [Lactobacillus acidophilus ATCC 4796]
gi|58253868|gb|AAV42105.1| DCMP deaminase [Lactobacillus acidophilus NCFM]
gi|227869088|gb|EEJ76509.1| competence protein ComEB [Lactobacillus acidophilus ATCC 4796]
Length = 159
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTDGTEIYVTHFPCYNC 102
>gi|34419354|ref|NP_899367.1| dCMP deaminase [Vibrio phage KVP40]
gi|34333035|gb|AAQ64190.1| dCMP deaminase [Vibrio phage KVP40]
Length = 150
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 47/155 (30%), Gaps = 43/155 (27%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
S +D ++ A F++ T V +IVK+ +I G G P
Sbjct: 7 SYYDLVYLDIAKSFAKKS---TCKQKQVGAVIVKNDRIISHGY---NGTPSGMLHCKDTA 60
Query: 54 ----------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
HAE A+ AG GAT YVT PC + +
Sbjct: 61 DFGDLTHRQWSEIHEIHAEQNAICYAARAGISTEGATMYVTASPCHNCAKLIVA------ 114
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
++ V WL +G+ V
Sbjct: 115 --AGIKILIVGSIYSGSQPDWWHWLRDRGVKVIMF 147
>gi|218531388|ref|YP_002422204.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
chloromethanicum CM4]
gi|218523691|gb|ACK84276.1| CMP/dCMP deaminase zinc-binding [Methylobacterium
chloromethanicum CM4]
Length = 153
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58
++ A + + G +IV+DG V+ R HAE+
Sbjct: 2 PDHESYLREATEIALANVAEGGR----PYGAVIVRDGEVVVRAANRIHATNDPSDHAEMV 57
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYG 83
A+ A + + Y + PC
Sbjct: 58 AIRAASQQLGRPKLDDCIVYASGRPCPMCH 87
>gi|325266384|ref|ZP_08133062.1| tRNA-specific adenosine deaminase [Kingella denitrificans ATCC
33394]
gi|324982177|gb|EGC17811.1| tRNA-specific adenosine deaminase [Kingella denitrificans ATCC
33394]
Length = 241
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V G ++ + HAE+ AL +AG+ YV+LEPC+
Sbjct: 115 PVGAVVVHRGNIVAQAYNRCVADCNVSHHAEILALAQAGQVLGSYRLNECDVYVSLEPCA 174
Query: 81 HY 82
Sbjct: 175 MC 176
>gi|296819637|ref|XP_002849879.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
gi|238840332|gb|EEQ29994.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480]
Length = 630
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 31/249 (12%)
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ + + H+TL A S D I ++G +K H LR++ DAI+
Sbjct: 355 RYNANIITNTANPRFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAII 414
Query: 195 VGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLS--LDSKIIKT----AL 241
+G+GT LADDP L CR P +I+DP + +S+++KT
Sbjct: 415 IGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWPASPESRLLKTAAEGKG 474
Query: 242 LAPVIIVTENDDPV--------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
AP +IV+ + + + + L +G+ SL++E
Sbjct: 475 KAPWVIVSPGAELHPEKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIQSLMIE 534
Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRR 343
GG V +N +DS+I+ + +G GG+ + + ++
Sbjct: 535 GGGVVLSELLNPEYVDFIDSVIVTVAPTYVGRGGVSASPDSKQDGEGKPINALTPYDIKW 594
Query: 344 DYFGSDVCL 352
G DV +
Sbjct: 595 QPLGKDVIM 603
>gi|308189593|ref|YP_003922524.1| dCMP deaminase [Mycoplasma fermentans JER]
gi|319776745|ref|YP_004136396.1| deoxycytidylate deaminase protein [Mycoplasma fermentans M64]
gi|238810149|dbj|BAH69939.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624335|gb|ADN68640.1| dCMP deaminase [Mycoplasma fermentans JER]
gi|318037820|gb|ADV34019.1| Deoxycytidylate deaminase protein [Mycoplasma fermentans M64]
Length = 163
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 32/103 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP----------- 53
+D FM+ A + + V +V + +I G G P
Sbjct: 8 WDGYFMALAKVSALRSK---DPSTKVGACVVNENKRIIALGY---NGMPKGIDDEFPWDR 61
Query: 54 --------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ +G T + +L PCS
Sbjct: 62 EGESPKETKYAYVVHAEMNAILNTNNNLQGCTIFTSLYPCSSC 104
>gi|328767193|gb|EGF77244.1| hypothetical protein BATDEDRAFT_14312 [Batrachochytrium
dendrobatidis JAM81]
Length = 353
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 34/109 (31%), Gaps = 40/109 (36%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D FM +R + V C++V + VI G G P
Sbjct: 194 NWDTYFMELCDLAARRSNCMKR---RVGCILVNNRRVIATGY---NGTPRGIRNCNDGGC 247
Query: 54 -------------------HAEVQALEEAG-EEARGA---TAYVTLEPC 79
HAE AL EAG E G+ T Y PC
Sbjct: 248 QRCNSNASCGSQLDTCLCLHAEENALLEAGRERISGSGHTTLYCNTCPC 296
>gi|325191113|emb|CCA25599.1| SUMO ligase putative [Albugo laibachii Nc14]
Length = 182
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL---- 60
M AL + G V C+ V +I HAE+ A+
Sbjct: 1 MREALEEAERALVRGEV----PVGCVAVYQNQIISFASNRTNELCNATKHAELVAIDYIV 56
Query: 61 ---EEAGEEARGATAYVTLEPCSHY 82
+ T YVT EPC
Sbjct: 57 SNYNNTRAIFQETTFYVTCEPCIMC 81
>gi|47459365|ref|YP_016227.1| deoxycytidylate deaminase competance related protein [Mycoplasma
mobile 163K]
gi|47458695|gb|AAT28016.1| deoxycytidylate deaminase competance related protein [Mycoplasma
mobile 163K]
Length = 154
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------- 53
+ + FM+ + + N V IV D V+ G G P
Sbjct: 7 DWHSYFMALSKVSALRSK---DPNTKVGACIVDDNKRVVSLGY---NGMPRGDDKNFSWK 60
Query: 54 ---------------HAEVQALEEAGEEAR-GATAYVTLEPCSHY 82
HAE+ A+ A ++ YV+L PCS+
Sbjct: 61 RDNEKAADNKYAYVIHAEINAILNANKQIDSKCVLYVSLFPCSNC 105
>gi|157092991|gb|ABV22150.1| cytidine/deoxycytidylate deaminase [Perkinsus chesapeaki]
Length = 295
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
++ D FM+AA + V L P +V +G+ + G HAEV
Sbjct: 16 ITKVDECFMTAACMSANAGVILCHGGP-FGASVVHNGMPVSCGHNTVLFDKDPTCHAEVN 74
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
A+ A + Y T EPC
Sbjct: 75 AIRHAVRDLGRSELSDCVLYTTCEPCPMC 103
>gi|291542828|emb|CBL15938.1| tRNA-adenosine deaminase [Ruminococcus bromii L2-63]
Length = 152
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V +IV++ ++ G HAE A+ A ++ G YVTLEPC
Sbjct: 25 PVGAVIVRNDEIVATGRNRREQGKNALLHAETDAIYNACQKLGGWRLWNCEIYVTLEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|169825268|ref|YP_001692879.1| putative late competence protein required for DNA binding
[Finegoldia magna ATCC 29328]
gi|167832073|dbj|BAG08989.1| putative late competence protein required for DNA binding
[Finegoldia magna ATCC 29328]
Length = 139
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
S++ FM AL + + V C++V D ++ G T
Sbjct: 4 SWNEYFMDLALNVATRSTCDRAF---VGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G +G YVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLNC 101
>gi|70982261|ref|XP_746659.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
gi|66844282|gb|EAL84621.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293]
gi|159122105|gb|EDP47227.1| riboflavin-specific deaminase [Aspergillus fumigatus A1163]
Length = 622
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 31/234 (13%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 378 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 437
Query: 210 R-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTENDDPVL 256
R + P +++DP + + + AP +IV+
Sbjct: 438 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 497
Query: 257 ALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
K + +L L G+ S+++EGG V +N +
Sbjct: 498 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 557
Query: 306 RLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
+DSII+ + +G GG+ SP + N ++ G +V +
Sbjct: 558 EFIDSIIVTVAPTYLGRGGVGVSPESKRDEQGKPNAALNPREIKWVPLGQNVIM 611
>gi|302380955|ref|ZP_07269416.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna ACS-171-V-Col3]
gi|303235173|ref|ZP_07321793.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna BVS033A4]
gi|302311176|gb|EFK93196.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna ACS-171-V-Col3]
gi|302493765|gb|EFL53551.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Finegoldia magna BVS033A4]
Length = 139
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
S++ FM AL + + V C++V D ++ G T
Sbjct: 4 SWNEYFMDLALNVATRSTCDRAF---VGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G +G YVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLNC 101
>gi|254431027|ref|ZP_05044730.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Cyanobium sp. PCC 7001]
gi|197625480|gb|EDY38039.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Cyanobium sp. PCC 7001]
Length = 225
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 28/218 (12%)
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--------TC 209
+S D + G + G + + A +D L+G T+
Sbjct: 1 MSLDGRLAPPRGGPAQLGGAGDRRALEEALAWADGCLIGAETLRLHGSTCLIREGDLLEK 60
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R + P+ +++ + L ++ +
Sbjct: 61 RQQAGRAPQPVAVVVSRSGRFPSTLPFWSQPLQRWLLGAPPAQGA---------AGFHRH 111
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---- 325
L L G+ +++ GGAA+A S + LVD + L +++G +
Sbjct: 112 LPLAPWPDALAHLAAHGLERMVLLGGAALARSLLELGLVDELQLTVCPLLLGGEHLWLPA 171
Query: 326 ------PSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
P PL G + G + L Y+
Sbjct: 172 ATQLQDPPPLAAGPGAAPWQLQTCRPLGGGECLLHYVR 209
>gi|83767797|dbj|BAE57936.1| unnamed protein product [Aspergillus oryzae]
Length = 142
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA- 67
AL ++ + +V KDG ++GRG HAE+ ALE +G
Sbjct: 10 ALEEAKQGYAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|323493550|ref|ZP_08098672.1| putative deoxycytidylate deaminase [Vibrio brasiliensis LMG 20546]
gi|323312373|gb|EGA65515.1| putative deoxycytidylate deaminase [Vibrio brasiliensis LMG 20546]
Length = 149
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFYQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSAMTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + +
Sbjct: 57 DREMKYLKTLHAEENAILFAKRDLDGCEIWVTHFPCPNCAAKIIQTGISAVHCPEQTE-D 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
+ Q G+ V+
Sbjct: 116 FLSRWGDKITVSQEMFLQAGVKVNW 140
>gi|116669003|ref|YP_829936.1| deaminase-reductase domain-containing protein [Arthrobacter sp.
FB24]
gi|116609112|gb|ABK01836.1| bifunctional deaminase-reductase domain protein [Arthrobacter sp.
FB24]
Length = 190
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
+ + E + LD L + TA P E + +
Sbjct: 25 WHLVDEELHQHFNDECKGLGGFLDGRLTYELMADYWPTADQDPNSPAVEVEFARIWRDMP 84
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLVDSIILY 314
K + D ++ +V + L L GA +A +F+ L+D +Y
Sbjct: 85 KFVFSRTLTDADWNTTVMHDVVPEEIAELKAQPGGDLAVSGANLAATFMRLGLIDEYRIY 144
Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
+V+G+G E + N + FG+ V L Y
Sbjct: 145 VHPVVLGQGNGRPLFESPDVRLNLKLLGTHTFGNGVALLHYER 187
>gi|194336940|ref|YP_002018734.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309417|gb|ACF44117.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme
BU-1]
Length = 177
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 34/106 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------------- 53
FMS A SR + +IV++ ++ G G P
Sbjct: 30 EYFMSVAHLISRRATCTRG---HIGAVIVRENSILSTGYNGAPSGLPHCNESNCRIYRSI 86
Query: 54 --------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ +A G + + Y+T PC H
Sbjct: 87 HPDGTVEENCVNTIHAEINAIAQAAKHGVSIKDSDIYITASPCIHC 132
>gi|329570031|gb|EGG51786.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Enterococcus faecalis TX1467]
Length = 144
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ +IV+ G +IGRG HAE+ A++EA +VTLEPC
Sbjct: 5 PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEACRGIENWRLEETQLFVTLEPCP 64
Query: 81 HYG 83
Sbjct: 65 MCS 67
>gi|291513963|emb|CBK63173.1| Pyrimidine reductase, riboflavin biosynthesis [Alistipes shahii WAL
8301]
Length = 359
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIG-RGV-TAYGGCPHAEVQALE 61
D R+++ A+ V ++ V ++ + DG G HAE +A+
Sbjct: 215 DEDLRYLTQAVAEGLRCVPSRTS-YCVGAVVALPDGR--SFTGYTHETSPTHHAEQEAIR 271
Query: 62 EA---GEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A G E RGA Y ++EPC C Q I+ G RVV + +PD V RG Q
Sbjct: 272 KALDAGAELRGAAIYSSMEPCSQRKSEPESCTQLILRHGFARVVFALYEPDRFVRCRGAQ 331
Query: 118 WLSQKGIIVDRMM 130
L + G+ V
Sbjct: 332 TLREAGVDVRVYP 344
Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
++T L RGV LLVEGGA+V F+ + D
Sbjct: 131 AIVTELEKRGVERLLVEGGASVLRMFLAEGMAD 163
>gi|313617055|gb|EFR89635.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
innocua FSL S4-378]
Length = 176
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 109 VWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 165
Query: 350 VCLEY 354
L Y
Sbjct: 166 AQLTY 170
>gi|224370212|ref|YP_002604376.1| hypothetical protein HRM2_31290 [Desulfobacterium autotrophicum
HRM2]
gi|223692929|gb|ACN16212.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 167
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM A + L V ++VK+ ++ G
Sbjct: 20 SWDVYFMDIARLVATRATCLRRK---VGAILVKERRILCSGYNGAPTHVPHCDVTGCLRE 76
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +G+T Y T +PCS +
Sbjct: 77 QLNVPSGQKHELCRGVHAEQNAIIQAAYHGISVKGSTLYCTHKPCSICAKM 127
>gi|16801778|ref|NP_472046.1| hypothetical protein lin2717 [Listeria innocua Clip11262]
gi|16415253|emb|CAC97943.1| lin2717 [Listeria innocua Clip11262]
gi|313622287|gb|EFR92786.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
innocua FSL J1-023]
Length = 174
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 VWLVGGAQLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 163
Query: 350 VCLEY 354
L Y
Sbjct: 164 AQLTY 168
>gi|61098160|ref|NP_080024.3| tRNA-specific adenosine deaminase 2 [Mus musculus]
gi|81885246|sp|Q6P6J0|ADAT2_MOUSE RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
gi|38328211|gb|AAH62195.1| Adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)
[Mus musculus]
gi|148671551|gb|EDL03498.1| deaminase domain containing 1 [Mus musculus]
Length = 191
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A+R ++ + V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEAMRMAKEALENIEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
YVT+EPC
Sbjct: 81 LDWCHQHGQSPSTVFEHTVLYVTVEPCIMC 110
>gi|282877407|ref|ZP_06286230.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella buccalis ATCC 35310]
gi|281300459|gb|EFA92805.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella buccalis ATCC 35310]
Length = 146
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+ D R++ A ++ V L+VK ++I G G P
Sbjct: 5 KLHQLDQRYLRMARIWAENSYCHRR---QVGALVVKGNMIISDGY---NGTPSGFDNVCE 58
Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 59 DENGVTHPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIEC 101
>gi|67541631|ref|XP_664583.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
gi|40742435|gb|EAA61625.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4]
gi|259483715|tpe|CBF79332.1| TPA: riboflavin-specific deaminase (AFU_orthologue; AFUA_4G04730)
[Aspergillus nidulans FGSC A4]
Length = 609
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 31/234 (13%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C
Sbjct: 362 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 421
Query: 210 R-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDPVL 256
R + P +I+DP + S + + AP ++V+
Sbjct: 422 RLQGAGGFGGLGRMWQPRPVIIDPTGRWSPGADSRLLRTAVEGKGRAPWVVVSPGAQIHP 481
Query: 257 AL--------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305
+ + + + + L G+ S+++EGG V +N +
Sbjct: 482 SKLLMLKGYGGEFLRIMEYHQNWRLRWESIFRALASEGIKSVMIEGGGRVLSELLNPEYA 541
Query: 306 RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+DS+++ + +G GG+ + N V+ G +V +
Sbjct: 542 EFIDSLVVTLAPTYLGSGGVGVSPDSKSDAQGKPNAALNPRDVKWVPLGQNVIM 595
>gi|330930301|ref|XP_003302977.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
gi|311321324|gb|EFQ88912.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1]
Length = 280
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR----LVDSIILYRSQIVIGEGGI---PS 327
+L L +G+ S+++EGG V + + LVDS+I+ + +G+GG+ P
Sbjct: 187 WHIILDALRQQGIQSVMIEGGGFVINDLLGPGPAYSLVDSVIVTIAPTWLGKGGVQVCPD 246
Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCL 352
E VR G DV L
Sbjct: 247 GGSERLPVTRLQNVRWVPLGEDVVL 271
>gi|299822872|ref|ZP_07054758.1| deoxycytidylate deaminase [Listeria grayi DSM 20601]
gi|299816401|gb|EFI83639.1| deoxycytidylate deaminase [Listeria grayi DSM 20601]
Length = 160
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSYLISTRS---TCTRLMVGATIVRDKRIIASGYNGSIAGGDHCTEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYIVDGHCIRTIHAEMNAILQCAKFGASTDNAELYVTHFPCISC 101
>gi|254474984|ref|ZP_05088370.1| cytosine deaminase [Ruegeria sp. R11]
gi|214029227|gb|EEB70062.1| cytosine deaminase [Ruegeria sp. R11]
Length = 152
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVAC-LIVKDGIVIGRGVTA----YGGCP 53
MP S M AL +R G V LI DG V+ +
Sbjct: 1 MPFRS----HMDVALSEARAAAERGEV----PVGAALIAPDGTVVAQAGNRTRELSDPTA 52
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAEV + EA E G YVTLEPC+
Sbjct: 53 HAEVLVIREACAAIGSERLNGYDLYVTLEPCAMC 86
>gi|220926362|ref|YP_002501664.1| CMP/dCMP deaminase [Methylobacterium nodulans ORS 2060]
gi|219950969|gb|ACL61361.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS
2060]
Length = 158
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++++ G V+ HAE+ A+ A E G YVTLEPC+
Sbjct: 33 PVGAVVMRGGTVLAVAGNRPRALRDPTAHAEILAIRAACQAIGDERLAGCDLYVTLEPCA 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|32455816|ref|NP_862468.1| hypothetical protein pADP-1_p031 [Pseudomonas sp. ADP]
gi|13937453|gb|AAK50264.1|U66917_31 hypothetical protein [Pseudomonas sp. ADP]
gi|12644709|gb|AAK00500.1| cytosine deaminase-like protein [Acidovorax citrulli]
Length = 158
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56
M + F++ + A+ + + ++V G ++ RG HAE
Sbjct: 1 MEHTKFESSMLQIAIEEAEASFLEGGL--PIGSVLVHRGKLVSRGRNLRAQTGSTLHHAE 58
Query: 57 VQALEEAGEEA----RGATAYVTLEPCSHY 82
+ AL AG + R Y TL PC
Sbjct: 59 MTALANAGRQPPEFYRETVLYTTLSPCPMC 88
>gi|301111742|ref|XP_002904950.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
gi|262095280|gb|EEY53332.1| deoxycytidylate deaminase [Phytophthora infestans T30-4]
Length = 252
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--------- 53
S+D FMS A + + V IV + ++G G GC
Sbjct: 94 SWDDYFMSVAFLSAMRSK---DPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWARE 150
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 151 TATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNEC 195
>gi|56961816|ref|YP_173538.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
gi|56908050|dbj|BAD62577.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16]
Length = 165
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ +I+K+G +I HAE+ A+E+A + G T YVTLEPC
Sbjct: 27 PIGAVIIKEGKLIASAYNLREANHSALAHAELLAIEQANKKLGAWRLEGCTLYVTLEPCP 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|239948393|ref|ZP_04700146.1| cytosine/adenosine deaminase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922669|gb|EER22693.1| cytosine/adenosine deaminase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 159
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQ 58
+F+ FM AL+ +R V +IV + +I HAE+
Sbjct: 10 NFNNFFMEQALKQARIAFDKNEV--PVGAVIVDRLNQKIIASTHNNTEEKNNALCHAEII 67
Query: 59 ALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLE C+
Sbjct: 68 AINEACNLIYSKNLNDYDIYVTLESCAMC 96
>gi|77164589|ref|YP_343114.1| bifunctional deaminase-reductase-like [Nitrosococcus oceani ATCC
19707]
gi|254433288|ref|ZP_05046796.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Nitrosococcus oceani AFC27]
gi|76882903|gb|ABA57584.1| bifunctional deaminase-reductase-like protein [Nitrosococcus oceani
ATCC 19707]
gi|207089621|gb|EDZ66892.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Nitrosococcus oceani AFC27]
Length = 364
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 10/202 (4%)
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
L + ++ I+ +A + D I A S I+ + + H LRA DA+LV
Sbjct: 129 PCLAGHHIASQKRLPWISAHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLV 188
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHF---------KLSLDSKIIKTALLAPVI 246
G GTV D+P LT R + + + H + + I
Sbjct: 189 GRGTVEKDNPRLTVREVPGENPKRVILDRQCHLLTGEKPYRIFQEPGHNWLLHSDSLNKI 248
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + DLK +L + G+ S+ VEGG F+
Sbjct: 249 ETHHAIPEKVIPLGVRNQAGEKNGKLMDLKAVLETIWSLGIRSVFVEGGGKTLSFFLAGG 308
Query: 307 LVDSIILYRSQIVIGEGGIPSP 328
D + L+ + +++G G+PS
Sbjct: 309 QTDLLHLHIAPLLLGS-GLPSF 329
>gi|229491248|ref|ZP_04385074.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229321787|gb|EEN87582.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 249
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L R + +L EGG ++ I VD + + S ++G L +
Sbjct: 164 DIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDELCITTSPQLVGSKVGRISLSPNAMPT 223
Query: 337 NFMCVRRDYFGS-D--VCLEYIGKNLC 360
G D + ++ +
Sbjct: 224 AMRPAHI--LGDTDGTILTRWVRQQPR 248
>gi|257868066|ref|ZP_05647719.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC30]
gi|257874396|ref|ZP_05654049.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC10]
gi|257876955|ref|ZP_05656608.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC20]
gi|257802149|gb|EEV31052.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC30]
gi|257808560|gb|EEV37382.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC10]
gi|257811121|gb|EEV39941.1| cytidine/deoxycytidylate deaminase [Enterococcus casseliflavus
EC20]
Length = 165
Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------Y 49
M + +D FM+ A+ S V +VKD +I G
Sbjct: 1 MSNTRIPWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCID 57
Query: 50 GG----------CPHAEVQALEEA---GEEARGATAYVTLEPC 79
G HAE+ AL + G A YVT PC
Sbjct: 58 DGCYVVDDHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPC 100
>gi|319408052|emb|CBI81706.1| Cytosine/adenosine deaminase [Bartonella schoenbuchensis R1]
Length = 161
Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 54/167 (32%), Gaps = 26/167 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-G-VTA--YGGCPHAE 56
M ++ M AL ++ V +I++ +I R G T HAE
Sbjct: 1 MSLTP-----MEIALLEAQLAAKQDEI--PVGAVIMRGKTIIARVGNYTKTVCDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
++A+ A E YVTLEPC CA I IRR+ DP
Sbjct: 54 IRAIRIACEILQSERIPDCDLYVTLEPC------AMCAAAISFARIRRLYYATSDPKGGA 107
Query: 112 SGRGLQWL----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154
G ++ V + + L Q + H L
Sbjct: 108 IEHGPRFYQQPTCHHIPEVYSGFKEKEASHLLKEFFAQKRNQKHSLL 154
>gi|295671871|ref|XP_002796482.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
brasiliensis Pb01]
gi|226283462|gb|EEH39028.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides
brasiliensis Pb01]
Length = 655
Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 31/243 (12%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ +TL A S D + + ++G SK H LR++ DAIL+G+GT
Sbjct: 374 PRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTA 433
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVII 247
+AD+P L CR + P II+DP + S D + + AP II
Sbjct: 434 MADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWII 493
Query: 248 VTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ + + + + +L L G+ S+++EGGA V
Sbjct: 494 VSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVI 553
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSD 349
+N VDS+I+ + +G GG+ + + +R G D
Sbjct: 554 SELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDETGKAINALDPRDIRWQSLGKD 613
Query: 350 VCL 352
V L
Sbjct: 614 VVL 616
>gi|294933962|ref|XP_002780922.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239891069|gb|EER12717.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 294
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57
++ D FM+AA + V L P +V+DG+ I HAEV
Sbjct: 14 TITKVDECFMTAACMSATAGVILRHGGP-FGAAVVRDGMPISCAHNTVLYNKDPTCHAEV 72
Query: 58 QALEEA-----GEEARGATAYVTLEPCSHY 82
A+ A E Y + EPC
Sbjct: 73 NAIRHAVRHLGRSELSDCVLYTSCEPCPMC 102
>gi|224036452|pdb|2W4L|A Chain A, Human Dcmp Deaminase
gi|224036453|pdb|2W4L|B Chain B, Human Dcmp Deaminase
gi|224036454|pdb|2W4L|C Chain C, Human Dcmp Deaminase
gi|224036455|pdb|2W4L|D Chain D, Human Dcmp Deaminase
gi|224036456|pdb|2W4L|E Chain E, Human Dcmp Deaminase
gi|224036457|pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ N V IV + ++G G G P
Sbjct: 14 EYFMAVAFLSAQRSK---DPNSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWRRT 67
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 68 AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNEC 110
>gi|213408261|ref|XP_002174901.1| deoxycytidylate deaminase [Schizosaccharomyces japonicus yFS275]
gi|212002948|gb|EEB08608.1| deoxycytidylate deaminase [Schizosaccharomyces japonicus yFS275]
Length = 320
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 33/110 (30%), Gaps = 38/110 (34%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
+DA FM A S + V C++V+D VI G G P
Sbjct: 172 WDAYFMQLASLASMRSNCMKR---RVGCVLVRDQRVIATGY---NGTPRGLRNCNEGGCT 225
Query: 54 ------------------HAEVQALEEAGEEARG--ATAYVTLEPCSHYG 83
HAE AL EAG E G Y PC
Sbjct: 226 RCNSAAKSGIGLGTCLCLHAEENALLEAGRERIGDRGILYCNTCPCLTCS 275
>gi|325118493|emb|CBZ54045.1| hypothetical protein NCLIV_038260 [Neospora caninum Liverpool]
Length = 487
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 44/110 (40%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
S+D FM + T +N V ++ + VI G G P
Sbjct: 329 SWDTYFMRLTF-LA-----STRSNCMKRRVGAIVARGNRVIATGY---NGTPSQAANCNA 379
Query: 54 -----------------------HAEVQALEEAG-EEARGATAYVTLEPC 79
HAE AL EAG + A T YVT PC
Sbjct: 380 GGCARCNDPNVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPC 429
>gi|297588118|ref|ZP_06946762.1| competence protein ComEB [Finegoldia magna ATCC 53516]
gi|297574807|gb|EFH93527.1| competence protein ComEB [Finegoldia magna ATCC 53516]
Length = 139
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
S++ FM AL + + V C++V D ++ G T
Sbjct: 4 SWNEYFMDLALNVATRSTCDRAF---VGCVLVNSDNRIVSTGYNGAISGNPHCDEVGHTL 60
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G +G YVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGIAVKGCICYVTHFPCLNC 101
>gi|170749290|ref|YP_001755550.1| deaminase-reductase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170655812|gb|ACB24867.1| bifunctional deaminase-reductase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 244
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-------KNF 338
G+ LLVEGG + S + + L+D + L V G G P+ + G E +
Sbjct: 157 GIERLLVEGGGHINGSMLKAGLIDELSLLLVPAVDGLSGTPAVFDIGGEEADTMGSRRKL 216
Query: 339 MCVRRDYF-GSDVCLEYI 355
+ V L Y
Sbjct: 217 DLTACERLSDGVVWLRYR 234
>gi|162452397|ref|YP_001614764.1| cytosine/adenosine deaminase [Sorangium cellulosum 'So ce 56']
gi|161162979|emb|CAN94284.1| cytosine/adenosine deaminase [Sorangium cellulosum 'So ce 56']
Length = 163
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GG----CPHAE 56
DA FM A+ S + + N ++V+ G V+ G HAE
Sbjct: 8 PLDAGFMQLAVDASSDAL--RAGNMPFGAVLVQGGQVLQVSCNQRRTANAGEGDCTAHAE 65
Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYG 83
V + EA E G T Y + EPC+
Sbjct: 66 VMLIREATAAHGPEALAGGTVYASGEPCAMCS 97
>gi|116333998|ref|YP_795525.1| deoxycytidylate deaminase [Lactobacillus brevis ATCC 367]
gi|116099345|gb|ABJ64494.1| Deoxycytidylate deaminase [Lactobacillus brevis ATCC 367]
Length = 159
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 37/119 (31%), Gaps = 25/119 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM AL S T SV IV+D +I G
Sbjct: 7 PWDQYFMLQALVMSTRS---TCNRLSVGATIVRDKRIIAAGYNGSVSGDDHCLDEGCYLV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
HAE+ A+ + GE GA YVT PC + A +R
Sbjct: 64 DGHCVRTIHAEMNAVLQCAKFGEATDGAEIYVTDFPCLQCTKMLLQAGITKITYMRNYH 122
>gi|323142103|ref|ZP_08076951.1| ComE operon protein 2 family protein [Phascolarctobacterium sp. YIT
12067]
gi|322413490|gb|EFY04361.1| ComE operon protein 2 family protein [Phascolarctobacterium sp. YIT
12067]
Length = 152
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 33/107 (30%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+D FM A S T SV +IVK+ ++ G
Sbjct: 9 WDDYFMEIARVVSSRS---TCMRRSVGAVIVKNKQIVATGYNGTPKDLPHCEVTGCLREQ 65
Query: 47 --------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G G T Y T +PC
Sbjct: 66 LHVPSGQMHELCRGIHAEQNAVVQAAYHGVSVNGGTLYCTHQPCVVC 112
>gi|167755827|ref|ZP_02427954.1| hypothetical protein CLORAM_01343 [Clostridium ramosum DSM 1402]
gi|237734796|ref|ZP_04565277.1| deoxycytidylate deaminase [Mollicutes bacterium D7]
gi|167704766|gb|EDS19345.1| hypothetical protein CLORAM_01343 [Clostridium ramosum DSM 1402]
gi|229382124|gb|EEO32215.1| deoxycytidylate deaminase [Coprobacillus sp. D7]
Length = 154
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 33/102 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------------- 53
FM A + N V IV + ++G G G P
Sbjct: 9 QYFMGVAKLSAFRSK---DPNTQVGACIVNEANKIVGVGY---NGLPWGCEDNEFPWEVR 62
Query: 54 -------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G YV+L PC
Sbjct: 63 EGDLYETKYPYVVHAELNAILNSTGQLKGCRIYVSLFPCHEC 104
>gi|294660212|ref|NP_852829.2| bifunctional dihydrofolate reductase/deoxycytidylate deaminase
[Mycoplasma gallisepticum str. R(low)]
gi|5565934|gb|AAD45277.1|AF152114_5 dihydrofolate reductase/deoxycytidylate deaminase fusion protein
[Mycoplasma gallisepticum]
gi|284811862|gb|AAP56397.2| Bifunctional protein including dihydrofolate reductase and
deoxycytidylate deaminase family domains [Mycoplasma
gallisepticum str. R(low)]
gi|284930290|gb|ADC30229.1| Bifunctional protein including dihydrofolate reductase and
deoxycytidylate deaminase family domains [Mycoplasma
gallisepticum str. R(high)]
gi|284931057|gb|ADC30995.1| Bifunctional protein including dihydrofolate reductase and
deoxycytidylate deaminase family domains [Mycoplasma
gallisepticum str. F]
Length = 317
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 32/104 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------- 53
S+D FM A + + V IV VIG G G P
Sbjct: 167 SWDEYFMMLANVSAMRSK---DPSTQVGACIVNKKKYVIGLGY---NGMPKGLDNIFPWD 220
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ T Y L PCS+
Sbjct: 221 RTNQDSAKTKYPYVVHAEINAILNTSTVIEDCTLYTNLFPCSNC 264
>gi|320547474|ref|ZP_08041760.1| competence protein comEB [Streptococcus equinus ATCC 9812]
gi|320447819|gb|EFW88576.1| competence protein comEB [Streptococcus equinus ATCC 9812]
Length = 154
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG---- 51
S++ FM+ A S+ + V ++VKD +I G + G
Sbjct: 6 SWEDYFMANAELISKRSTCNRAF---VGAVLVKDNRIIATGYNGGVSETDNCSEAGHKME 62
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G +G YVT PC +
Sbjct: 63 DGHCIRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCINC 102
>gi|284033054|ref|YP_003382985.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283812347|gb|ADB34186.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 242
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 3/167 (1%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
+ G + R +P I+ L S + A + P++
Sbjct: 75 IEGYRPLRLSAARREWRRAQGLPENPTLAIVSSRLDLDPASPFLAEAPVRPIVFTHTASP 134
Query: 254 PVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
A ++ + DL+ ++ LV RG+ +L EGG + + + LVD +
Sbjct: 135 LDAREALAEVADVVVCGRAGVDLRAVMKTLVERGLPQVLSEGGPHLLGALTAADLVDEMC 194
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGK 357
L + ++ G G +R G D + Y+ +
Sbjct: 195 LSLAPVLAGPGSGRITAGPTATAIRSFALRSLLAGDDGFLFFRYLRE 241
>gi|325685004|gb|EGD27143.1| hypothetical protein HMPREF5505_1192 [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 91
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
+ D +M AL +R T NP V +VKDG V+ G + G HAE + +
Sbjct: 2 ASDEEYMRLALAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISK 59
>gi|299141063|ref|ZP_07034201.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
C735]
gi|298578029|gb|EFI49897.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
C735]
Length = 150
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ L V L+VKD ++I G G P
Sbjct: 10 LDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDANQ 63
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 64 ATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIEC 102
>gi|332880028|ref|ZP_08447712.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682024|gb|EGJ54937.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 146
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +M A+ +++ V ++VKD ++I G G P
Sbjct: 13 DKAYMRMAMEWAKLSYSQRK---QVGAIMVKDRMIISDGY---NGTPTGFDNCCEDEEGN 66
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + ++GAT Y+T+ PC
Sbjct: 67 THWFVLHAEANAIMKVAASTQSSQGATLYITMSPCKECS 105
>gi|315453509|ref|YP_004073779.1| Riboflavin biosynthesis protein [Helicobacter felis ATCC 49179]
gi|315132561|emb|CBY83189.1| Riboflavin biosynthesis protein, priboflavin-specific deaminase
[Helicobacter felis ATCC 49179]
Length = 343
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
M + L + L NPSVAC+++ ++ PHAEV+AL EA
Sbjct: 6 MQSCLDKAWEVQTLALPNPSVACMVLDQNYRLLSLQTHTKAHTPHAEVRALAEAFNALSA 65
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ T VTLEPC+H+G++PPCA + +RV
Sbjct: 66 VPFPKDIDPLDKQANYNFLAQNHSDLFKECTLLVTLEPCNHFGKTPPCAALLCALKPKRV 125
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIV 126
+V + G GL+ L + GI V
Sbjct: 126 IVGALEQHPPAQG-GLKRLQEAGIEV 150
>gi|261250832|ref|ZP_05943406.1| putative deoxycytidylate deaminase [Vibrio orientalis CIP 102891]
gi|260937705|gb|EEX93693.1| putative deoxycytidylate deaminase [Vibrio orientalis CIP 102891]
Length = 149
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 42/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAQRFYQMA-EL----VGSWSKDPSTQVGAVITKQNRIVSVGFNGYPHGISDSAMTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + I
Sbjct: 57 DREMKYLKTLHAEENAILFAKRDLDGCEIWVTHFPCPNCAAKI-IQTGISAVHCPEQTPD 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
+ Q G+ V+
Sbjct: 116 FLSRWGDKIKVSQEMFLQAGVKVNW 140
>gi|149021461|gb|EDL78924.1| similar to 6030466N05Rik protein, isoform CRA_b [Rattus norvegicus]
Length = 175
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 23 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 76
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 77 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 119
>gi|15893208|ref|NP_360922.1| cytosine deaminase [Rickettsia conorii str. Malish 7]
gi|15620423|gb|AAL03823.1| cytosine deaminase [Rickettsia conorii str. Malish 7]
Length = 168
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEV 57
+F+ FM AL+ ++ N V ++V +I HAE+
Sbjct: 10 NFNNFFMEQALKQAKIAF---DKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEI 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ EA + YVTLEPC+
Sbjct: 67 IAINEACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|255530903|ref|YP_003091275.1| zinc-binding CMP/dCMP deaminase [Pedobacter heparinus DSM 2366]
gi|255343887|gb|ACU03213.1| CMP/dCMP deaminase zinc-binding [Pedobacter heparinus DSM 2366]
Length = 151
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 31/110 (28%)
Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------- 49
M V SF+ FM+ A + + + V ++ KD +I G
Sbjct: 1 MTVKPSFNHIFMNLASDLAGRSHCVRA---QVGAVLTKDTRIISIGYNGPPAGTHNCDEE 57
Query: 50 ---GGCP-----------HAEVQALE---EAGEEARGATAYVTLEPCSHY 82
GC HAE A+ + G + G+T Y TL PC
Sbjct: 58 WPEAGCARDSRGSCSLALHAEENAILYGIKNGSKIEGSTLYTTLSPCIAC 107
>gi|238501136|ref|XP_002381802.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
NRRL3357]
gi|220692039|gb|EED48386.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus
NRRL3357]
Length = 273
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI----PS 327
+L L G+ S+++EGG V +S + + LV+S+I+ + +G+GG+
Sbjct: 183 WTAVLECLRNEGLRSVMIEGGGTVINSLLEPRWAHLVNSVIVTIAPTWLGQGGVVVSPRR 242
Query: 328 PLEEGYL--EKNFMCVRRDYFGSDVCL 352
+E G + V+ FG DV L
Sbjct: 243 RVEGGAVVPAARLRDVKWYPFGEDVVL 269
>gi|163942082|ref|YP_001646966.1| ComE operon protein 2 [Bacillus weihenstephanensis KBAB4]
gi|163864279|gb|ABY45338.1| ComE operon protein 2 [Bacillus weihenstephanensis KBAB4]
Length = 185
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|241764142|ref|ZP_04762178.1| bifunctional deaminase-reductase domain protein [Acidovorax
delafieldii 2AN]
gi|241366548|gb|EER61041.1| bifunctional deaminase-reductase domain protein [Acidovorax
delafieldii 2AN]
Length = 247
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-- 331
+ + +L+V GG + SF+ + LVD + L + + GE + E+
Sbjct: 147 CKLAAEKLKALFQIETLMVSGGGFINWSFLQAGLVDELSLVIAPLADGENNTVTLFEKSD 206
Query: 332 ---GYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
+ F + D + L Y+ KN
Sbjct: 207 YLPAHAPVEFTLKSAEVGKGDSIWLRYVVKN 237
>gi|320537565|ref|ZP_08037503.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Treponema phagedenis F0421]
gi|320145567|gb|EFW37245.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Treponema phagedenis F0421]
Length = 165
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 34/112 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------- 53
++D FM ++ C+I +D ++ G + G P
Sbjct: 9 KRPTWDEYFMEVCHAIAKRATCDRG---RSGCVIARDNQILVTGYVGSPTGLPHCDEVGH 65
Query: 54 --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT Y + PC
Sbjct: 66 QLKKMQHEDGSITQHCVRTVHAEQNAICQAARRGIAINGATLYCKMTPCRTC 117
>gi|195143831|ref|XP_002012900.1| GL23678 [Drosophila persimilis]
gi|194101843|gb|EDW23886.1| GL23678 [Drosophila persimilis]
Length = 160
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 17/123 (13%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ V + V+ RG HAE ++
Sbjct: 4 FMEEALMEARRARDAGEV----PVGCVFVHEDKVVARGANEVNVSRNATRHAEFICIDAI 59
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
AY + + + V+ G + G
Sbjct: 60 -------LAYCREKNLPARQMFSEIIVVVTVEPCIMCSAALHTLGVQEIIFGCENDRFGG 112
Query: 124 IIV 126
V
Sbjct: 113 KTV 115
>gi|156554302|ref|XP_001602407.1| PREDICTED: similar to deoxycytidylate deaminase [Nasonia
vitripennis]
Length = 206
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 44/176 (25%), Gaps = 39/176 (22%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------- 53
+D FMS A S V IV D ++G G G P
Sbjct: 32 FLDWDDYFMSVAFLASMRSK---DPCTQVGACIVNEDKKIVGVGY---NGMPIGCNDDDF 85
Query: 54 ------------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
HAE+ A+ + E + T YV L PC + I
Sbjct: 86 SWKKAHESELDSKFLYVCHAELNAILNKNSENVKNCTLYVGLFPC-----NECAKVIIQS 140
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
R + + + + + KI + +
Sbjct: 141 GIKRVYYMSDKHAHKVRTKAAKRMFDAAKVEYCQYKPKHEKIVIDFGEINWNDMTQ 196
>gi|134107195|ref|XP_777728.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260424|gb|EAL23081.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 198
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 28/195 (14%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + V + + P +ILDP + L S+I+
Sbjct: 3 MTHHLRAIHDAILVGVHTLVLDDPRLQTNLLPPSHASPPPQPLILDPSLRFPLTSRILNE 62
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINII---------------YCDCRDLKKLLTILVG 284
P + P + + I L +IL
Sbjct: 63 WNTKPALRGRTLKQPWILCGPDVSSDRIHEVEQAGARVVPVPLDPNGRIPPSSLPSILTS 122
Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
G+ S++VEGG+ V SF++ S+LVDS+++ + IG+GG E
Sbjct: 123 LGLRSVMVEGGSRVLSSFLHTLKRDDGSKLVDSVVVTVAPTFIGQGG------EDKGLPG 176
Query: 338 FMCVRRDYFGSDVCL 352
V + G D +
Sbjct: 177 LQTVHTETMGKDTVM 191
>gi|117924693|ref|YP_865310.1| CMP/dCMP deaminase, zinc-binding [Magnetococcus sp. MC-1]
gi|117608449|gb|ABK43904.1| CMP/dCMP deaminase, zinc-binding protein [Magnetococcus sp. MC-1]
Length = 167
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 30/110 (27%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M S+D +M A + + V + V+D ++ G
Sbjct: 1 MSRPSWDIHWMRVAKLAAEMSTCASGR--RVGAVFVRDKRLLATGFNGVPSGYPHPTSCA 58
Query: 48 -AYGGCP-----------HAEVQALEEAGE---EARGATAYVTLEPCSHY 82
G P HAE + AG + G YVT PC
Sbjct: 59 RREAGVPSGQGLGLCVCAHAEANGIANAGRHGIKLEGCRVYVTTHPCGAC 108
>gi|325570545|ref|ZP_08146271.1| competence protein comEB [Enterococcus casseliflavus ATCC 12755]
gi|325156391|gb|EGC68571.1| competence protein comEB [Enterococcus casseliflavus ATCC 12755]
Length = 165
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------Y 49
M + +D FM+ A+ S V +VKD +I G
Sbjct: 1 MSNTRIPWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCID 57
Query: 50 GG----------CPHAEVQALEEA---GEEARGATAYVTLEPC 79
G HAE+ AL + G A YVT PC
Sbjct: 58 DGCYVVDDHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPC 100
>gi|58039265|ref|YP_191229.1| cytosine deaminase [Gluconobacter oxydans 621H]
gi|58001679|gb|AAW60573.1| Cytosine deaminase [Gluconobacter oxydans 621H]
Length = 168
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQALEEA 63
M AL+ +R G V +++ DG V+ G HAE+ A+ EA
Sbjct: 16 MQIALQAAREAASCGEV----PVGAVVLAPDGNVLAVARNHVEGAHDASAHAELLAMREA 71
Query: 64 GEEAR-----GATAYVTLEPCSHY 82
+ T VTLEPCS
Sbjct: 72 ATRLKSPRLTDCTLVVTLEPCSMC 95
>gi|307544360|ref|YP_003896839.1| cytosine deaminase [Halomonas elongata DSM 2581]
gi|307216384|emb|CBV41654.1| cytosine deaminase [Halomonas elongata DSM 2581]
Length = 152
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG 64
FM AAL +R + + ++V G+++G G G H E+ ALE AG
Sbjct: 3 HFMQAALDEARAGLDEGGI--PIGSVLVHRGVILGGGRNRRVQLGSTVLHGEMDALENAG 60
Query: 65 EEA----RGATAYVTLEPCSHY 82
++ R +T Y TL PC+
Sbjct: 61 RQSADIYRESTLYTTLSPCAMC 82
>gi|291237544|ref|XP_002738694.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 203
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP---------- 53
S++ FM+ A ++ + V IV + ++G G G P
Sbjct: 47 SWEDYFMAVAFLSAQRSK---DPSSQVGACIVNEEKKIVGIGY---NGMPIGCSDDVLPW 100
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 101 RRKADDELDTKYPYVCHAELNAILNKNSSDVKGCTMYVALFPCNEC 146
>gi|295692075|ref|YP_003600685.1| dcmp deaminase [Lactobacillus crispatus ST1]
gi|295030181|emb|CBL49660.1| dCMP deaminase [Lactobacillus crispatus ST1]
Length = 159
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VK+ +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
gi|116062718|dbj|BAA80270.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1]
Length = 220
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 7/204 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + + + D I S+ ++ H RA +DA++VG T + D P
Sbjct: 1 MARPYTFIFSTATLDGRIASITGYSL-LSCREDFELQHKYRASADAVMVGSRTAVLDRPR 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT RL + P+R+++D K+ D ++ + + L + +
Sbjct: 60 LTVRLARGRS--PLRVVVDSGLKVPPDVAGLRRGSVLVTAEGHSRERLKPYLERGVEVVE 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323
+ + + GV L+VEGG + + + LVD + + + G G
Sbjct: 118 AGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNCAMLEKGLVDEVRATIAPYIFGGGVGL 177
Query: 324 -GIPSPLEEGYLEKNFMCVRRDYF 346
P +
Sbjct: 178 AECPGVFDGRDRRVELALQHTRIL 201
>gi|227877964|ref|ZP_03995968.1| competence protein ComEB family protein [Lactobacillus crispatus
JV-V01]
gi|256844344|ref|ZP_05549830.1| dCMP deaminase [Lactobacillus crispatus 125-2-CHN]
gi|256849252|ref|ZP_05554685.1| dCMP deaminase [Lactobacillus crispatus MV-1A-US]
gi|293381479|ref|ZP_06627474.1| putative ComE operon protein 2 [Lactobacillus crispatus 214-1]
gi|312978355|ref|ZP_07790097.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
crispatus CTV-05]
gi|227862434|gb|EEJ69949.1| competence protein ComEB family protein [Lactobacillus crispatus
JV-V01]
gi|256613422|gb|EEU18625.1| dCMP deaminase [Lactobacillus crispatus 125-2-CHN]
gi|256714028|gb|EEU29016.1| dCMP deaminase [Lactobacillus crispatus MV-1A-US]
gi|290921949|gb|EFD98956.1| putative ComE operon protein 2 [Lactobacillus crispatus 214-1]
gi|310894698|gb|EFQ43770.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
crispatus CTV-05]
Length = 159
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VK+ +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|113953595|ref|YP_731744.1| riboflavin biosynthesis protein RibD domain-containing protein
[Synechococcus sp. CC9311]
gi|113880946|gb|ABI45904.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Synechococcus sp. CC9311]
Length = 218
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 9/131 (6%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S+ P + + + L L G ++
Sbjct: 87 SRHPDFCQEWPFFHQALERHLLTPDRMSAEGFFSTHRLQPSWGSTLVELAALGFQRFVLL 146
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE-------GGIPSPLEEGYLEKNFMCVRRDYF 346
GGA + S + + VD + L S ++G G P + V D
Sbjct: 147 GGAGLCGSLLEADQVDELQLTMSPCLLGGRFSWIPSDGFRMP-TALSQPDAWTLVSADRL 205
Query: 347 -GSDVCLEYIG 356
G+++ + Y
Sbjct: 206 SGNELVVRYRR 216
>gi|159037136|ref|YP_001536389.1| hypothetical protein Sare_1500 [Salinispora arenicola CNS-205]
gi|157915971|gb|ABV97398.1| bifunctional deaminase-reductase domain protein [Salinispora
arenicola CNS-205]
Length = 248
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 12/161 (7%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D+ R P +++ L A + PV++ LA
Sbjct: 94 DERRRAWRREHGLPQYPTLVVVSGSLNLDPAQAAFVDAPVRPVVLTHAAATAPPGLAEVA 153
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ L + RG+ LL EGG + + + LVD + L + ++ G
Sbjct: 154 DVVECGDDRVDLTAGLAELR-RRGLGQLLCEGGPHLFGALTAADLVDEVCLTLAPLLAGP 212
Query: 323 G------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
G G PSP+ L + L Y
Sbjct: 213 GPGRITAGGPSPVRHLPLRHVLAAA-----DGGLLLRYTRD 248
>gi|116617577|ref|YP_817948.1| deoxycytidylate deaminase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096424|gb|ABJ61575.1| Deoxycytidylate deaminase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 158
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+ F++ A S T T V +IV+D +I G + G P
Sbjct: 7 SWHQYFIAQAAILSTRS---TCTRLHVGAIIVRDHRIIASGYNGSVSGTPHCTEVGDLMV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G G+ YVT PC
Sbjct: 64 DGHCIRAVHAEQNALMQAAKMGITIDGSEVYVTDVPCVQC 103
>gi|262047267|ref|ZP_06020225.1| dCMP deaminase [Lactobacillus crispatus MV-3A-US]
gi|260572512|gb|EEX29074.1| dCMP deaminase [Lactobacillus crispatus MV-3A-US]
Length = 159
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VK+ +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKNNRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|169350182|ref|ZP_02867120.1| hypothetical protein CLOSPI_00926 [Clostridium spiroforme DSM 1552]
gi|169292965|gb|EDS75098.1| hypothetical protein CLOSPI_00926 [Clostridium spiroforme DSM 1552]
Length = 154
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 33/102 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM A + N V IV + ++G G G P
Sbjct: 9 QYFMGVAKLSAFRSK---DPNTQVGACIVSPENKIVGVGY---NGLPWGCDDKEFPWEVR 62
Query: 54 -------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + +G YV+L PC
Sbjct: 63 EGDLYDTKYPYVVHAELNAILNSIGNLKGCRIYVSLFPCHEC 104
>gi|159901995|gb|ABX10725.1| cytidine and deoxycytidylate deaminase family protein [uncultured
planctomycete 13FN]
Length = 164
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA--YGGCPHAE 56
M S M A+ ++ + +IV +++ GV HAE
Sbjct: 1 MS-SPNHESSMRHAIEVAK-----ANPRHPFGAVIVSSASEVIVAEGVNRSSKNPTLHAE 54
Query: 57 VQALEE----AGEEARGATAYVTLEPCSHY 82
+ + G + T Y T EPC
Sbjct: 55 IDVINNYAASGGTDWHRLTLYTTAEPCPMC 84
>gi|310288270|ref|YP_003939529.1| tRNA-specific adenosine deaminase [Bifidobacterium bifidum S17]
gi|309252207|gb|ADO53955.1| tRNA-specific adenosine deaminase [Bifidobacterium bifidum S17]
Length = 150
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----PHA 55
+ D M A+ G V +++ + G VIGRG HA
Sbjct: 1 MGELDEA-MCEAIALGERAGKQGDV----PVGAVVLDERGTVIGRGRNRREAGHDPLAHA 55
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSP 86
E++A+ EA + T VTLEPC +
Sbjct: 56 EIEAMREAAQARGDWNLADCTLVVTLEPCPMCAGAC 91
>gi|329962142|ref|ZP_08300153.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides fluxus YIT 12057]
gi|328530790|gb|EGF57648.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bacteroides fluxus YIT 12057]
Length = 146
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D R++ A ++ + V LIVKD ++I G G P
Sbjct: 11 ALDKRYIRMASIWAENSYCIRR---QVGALIVKDQMIISDGY---NGTPAGFENICEDEN 64
Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHY 82
HAE A + + + GAT YVT PC
Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIEC 104
>gi|86356480|ref|YP_468372.1| cytosine deaminase protein [Rhizobium etli CFN 42]
gi|86280582|gb|ABC89645.1| cytosine deaminase protein [Rhizobium etli CFN 42]
Length = 143
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG---- 64
AL + G P + ++V DGI + R HAE+ A+ A
Sbjct: 1 MALEEA-RAAGERGEVP-IGAVVVIDGIAVSRSGNRTRERNDVTAHAEIAAIRLACEALG 58
Query: 65 -EEARGATAYVTLEPCSHYG 83
E GA YVTLEPC+
Sbjct: 59 QERLAGADLYVTLEPCTMCS 78
>gi|73539205|ref|YP_299572.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Ralstonia eutropha JMP134]
gi|72122542|gb|AAZ64728.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Ralstonia eutropha JMP134]
Length = 152
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ M A+ + ++ ++ DG + GV ++ HAE++A+
Sbjct: 2 ATHEHLMREAVELAVTNLRRGGR--PFGAVLAIDGEAVATGVNDIVHSHDPTTHAEMEAV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
A + G+ Y + PC
Sbjct: 60 RAAARKLGRPDLSGSVVYASGHPCPMC 86
>gi|227495664|ref|ZP_03925980.1| deaminase [Actinomyces coleocanis DSM 15436]
gi|226830896|gb|EEH63279.1| deaminase [Actinomyces coleocanis DSM 15436]
Length = 191
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAY----GGCPHAEVQALEEAG 64
FM A+ + + + V L+V +G VI G C HAEV L A
Sbjct: 48 FMRQAMNLAAEA--ERAGDVPVGALLVSEGGEVIATGFNTREAACDPCGHAEVNVLRAAA 105
Query: 65 EEA-----RGATAYVTLEPCSHY 82
+ T VTLEPC
Sbjct: 106 AKLGTWRFPSYTLVVTLEPCVMC 128
>gi|171779275|ref|ZP_02920246.1| hypothetical protein STRINF_01123 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282331|gb|EDT47758.1| hypothetical protein STRINF_01123 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 154
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG---- 51
S++ FM+ A S+ + V ++VKD +I G + G
Sbjct: 6 SWEDYFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSETDNCSEAGHKME 62
Query: 52 ------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G +G YVT PC +
Sbjct: 63 DGHCIRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCINC 102
>gi|222480528|ref|YP_002566765.1| CMP/dCMP deaminase zinc-binding [Halorubrum lacusprofundi ATCC
49239]
gi|222453430|gb|ACM57695.1| CMP/dCMP deaminase zinc-binding [Halorubrum lacusprofundi ATCC
49239]
Length = 174
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59
+ D +++ A+ + V + N L+V DG ++ T H E A
Sbjct: 23 TPSDRKYVDRAIELAEEAVEM--GNTPFGALLVLDGEIVAEAHNETLTEDDLAAHPE-LA 79
Query: 60 LEE-AGEEAR-----GATAYVTLEPCSHY 82
L AG E T Y + EPC
Sbjct: 80 LARWAGRELDVDERARCTMYASTEPCPMC 108
>gi|323499282|ref|ZP_08104259.1| putative deoxycytidylate deaminase [Vibrio sinaloensis DSM 21326]
gi|323315670|gb|EGA68704.1| putative deoxycytidylate deaminase [Vibrio sinaloensis DSM 21326]
Length = 150
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 18/119 (15%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYG-G----------------CPHAEVQALEEAGEEARG 69
+ V +I K ++ G Y G HAE A+ A + G
Sbjct: 23 PSTQVGAVITKQNRIVSVGFNGYPHGISDSAMTDDREMKYLKTLHAEENAILFAKRDLDG 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+VT PC + I + Q G+ V+
Sbjct: 83 CEIWVTHFPCPNCAAKI-IQTGISAVHCPEQTPDFLSRWGDKIQVSQEMFLQAGVKVNW 140
>gi|194017722|ref|ZP_03056332.1| ComE operon protein 2 [Bacillus pumilus ATCC 7061]
gi|194010622|gb|EDW20194.1| ComE operon protein 2 [Bacillus pumilus ATCC 7061]
Length = 189
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S++ FM+ + + T +V IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCERLAVGATIVRDKRIIAGGYNGSIAGDVHCADVG 57
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVIDHHCVRTIHAEMNAILQCAKFGAPTADAEIYVTHFPCLQC 101
>gi|18313740|ref|NP_560407.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum
aerophilum str. IM2]
gi|18161296|gb|AAL64589.1| riboflavin specific deaminase, putative [Pyrobaculum aerophilum
str. IM2]
Length = 227
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 12/215 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ L AV+ D I S ++ ++H LRA+ DA++VG T + D+P L
Sbjct: 1 MRPYVYLMAAVTIDGRIASKSGYSR-LSCPHDLKRLHALRAEVDAVIVGANTAIIDNPRL 59
Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNIN 266
T R +P R+++D + +I V + + L +
Sbjct: 60 TVRYAA--GRNPTRVLIDGALRAPTTLRIFDKTAPTIVYTTNLAPAEKINELRRLGIEVV 117
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321
+ D +L+ L RGV +L+EGG FI+ LVD +I+ + V G
Sbjct: 118 VFPSHRVDPASVLSDLYNRGVRKVLIEGGGRTNWEFISKCLVDEVIVTVTPYVFGSGVSL 177
Query: 322 --EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G +EE + V+ G +V ++Y
Sbjct: 178 VEGEGFKD-IEEMPFNLKLLGVKLCECGKEVVVKY 211
>gi|41406760|ref|NP_959596.1| hypothetical protein MAP0662c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118463808|ref|YP_880050.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium 104]
gi|41395110|gb|AAS02979.1| hypothetical protein MAP_0662c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165095|gb|ABK65992.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium 104]
Length = 166
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IV+DG V+ HAE+ A+ A
Sbjct: 4 FARRTIDLARQNVAEGGR--PFATVIVQDGEVLAESANKAAQTNDPTAHAEILAIRAACL 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E AT YV PC
Sbjct: 62 KLGTEHLVDATIYVLAHPCPMC 83
>gi|254773714|ref|ZP_05215230.1| cytidine/deoxycytidylate deaminase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 177
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IV+DG V+ HAE+ A+ A
Sbjct: 15 FARRTIDLARQNVAEGGR--PFATVIVQDGEVLAESANKAAQTNDPTAHAEILAIRAACL 72
Query: 65 ----EEARGATAYVTLEPCSHY 82
E AT YV PC
Sbjct: 73 KLGTEHLVDATIYVLAHPCPMC 94
>gi|242796726|ref|XP_002482861.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
stipitatus ATCC 10500]
gi|218719449|gb|EED18869.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces
stipitatus ATCC 10500]
Length = 341
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS----RLVDSIILYRSQIVIGEGG 324
+ L + + S+++EGG ++ +S ++ L+DS+I+ + +G+GG
Sbjct: 236 HRHFDWHDILHVLATKENIRSIMIEGGGSIINSLLSEQKFSGLIDSVIVTIAPTWLGQGG 295
Query: 325 I----PSPLEEGY---LEKNFMCVRRDYFGSDVCL 352
+ ++E V+ FG DV L
Sbjct: 296 VVVSPKRRVDEHGYAIPASRLTDVKWYPFGEDVVL 330
>gi|118580021|ref|YP_901271.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379]
gi|118502731|gb|ABK99213.1| CMP/dCMP deaminase, zinc-binding protein [Pelobacter propionicus
DSM 2379]
Length = 155
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S+D F+ + L V L+VKD ++ G
Sbjct: 1 MQRPSWDRYFIDITRLVATRSTCLRRG---VGALLVKDRNILATGYNGAPSGISHCSEAG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T PC +
Sbjct: 58 CLRERLNVPSGERHELCRGLHAEQNAIIQAARHGVNIDGATLYCTTMPCVICTKM 112
>gi|254368626|ref|ZP_04984642.1| predicted protein [Francisella tularensis subsp. holarctica
FSC022]
gi|157121529|gb|EDO65720.1| predicted protein [Francisella tularensis subsp. holarctica
FSC022]
Length = 64
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 1 MP-VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53
M S D FM A + + G + ++V+D +I + G
Sbjct: 1 MSNYSDQDIFFMQKAYQQALLAYQAGEV----PIGAVLVRDDQIIVQNFNQTIGLNDPTA 56
Query: 54 HAEVQALE 61
HAE+ L
Sbjct: 57 HAEILVLR 64
>gi|38232870|ref|NP_938637.1| putative cytosine deaminase [Corynebacterium diphtheriae NCTC
13129]
gi|38199128|emb|CAE48752.1| Putative cytosine deaminase [Corynebacterium diphtheriae]
Length = 147
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWHVGLTST-NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ + T + V +I DG ++GRG HAE+ A+ +A
Sbjct: 1 MMREAITLAH----TTPPADIPVGAIIYGPDGTILGRGTNRRETDHNPLGHAEIMAITQA 56
Query: 64 ------GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 57 CTQRGDGWRLTDCTLAVTLEPCTMC 81
>gi|115388491|ref|XP_001211751.1| cytosine deaminase [Aspergillus terreus NIH2624]
gi|114195835|gb|EAU37535.1| cytosine deaminase [Aspergillus terreus NIH2624]
Length = 148
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA- 67
A+ ++ + +V KDG ++GRG HAE+ ALE +G
Sbjct: 10 AVEEAKKGAAEGGV--PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMAALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYAGATMYTTLSPCDMCTGAC 89
>gi|225352824|ref|ZP_03743847.1| hypothetical protein BIFPSEUDO_04457 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156335|gb|EEG69904.1| hypothetical protein BIFPSEUDO_04457 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 149
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 1 MPVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S M A+ +R G V +++ G VIG G
Sbjct: 1 MQWSDD----MELAIELAREAAAEGEV----PVGAVVLDAGGAVIGSGRNLREAHADPLA 52
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSP 86
HAEV+A+ +A T VTLEPC +
Sbjct: 53 HAEVKAMTQAARSLGTWNLADCTLIVTLEPCPMCAGAC 90
>gi|198451012|ref|XP_001358211.2| GA18791 [Drosophila pseudoobscura pseudoobscura]
gi|198131295|gb|EAL27348.2| GA18791 [Drosophila pseudoobscura pseudoobscura]
Length = 160
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 17/123 (13%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ V + V+ RG HAE ++
Sbjct: 4 FMEEALMEARRARDAGEV----PVGCVFVHEDKVVARGANEVNVSRNATRHAEFICIDAI 59
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
AY + + + V+ G + G
Sbjct: 60 -------LAYCREKNLPARQMFSEIIVVVTVEPCIMCSAALHTLGVQEIIFGCENDRFGG 112
Query: 124 IIV 126
V
Sbjct: 113 KTV 115
>gi|327292501|ref|XP_003230949.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
gi|326466886|gb|EGD92339.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892]
Length = 645
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
K H+TL A S D I ++G SK H LR++ DAI++G+GT LADDP L
Sbjct: 381 KFPHVTLTYAQSMDGKISSKPGVQTVLSGPESKAMTHYLRSRHDAIIIGLGTALADDPGL 440
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDP 254
CR P +I+DP + S ++ + AP +IV+ +
Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500
Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + L +G+ S+++EGG V +N
Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560
Query: 305 -SRLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G G+ + L ++ G DV +
Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNIKWQPLGKDVIM 616
>gi|323704821|ref|ZP_08116398.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535747|gb|EGB25521.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 172
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + + T V +IVKD +I G
Sbjct: 28 SWDEYFM-MVVDVVKTR--STCLRRQVGAVIVKDKHIISTGYNGAPTGLKHCEEVGCMRE 84
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + AT YV+ PCS +
Sbjct: 85 SLNIPSGERHELCRGTHAEQNAIIQAALNGVSTKDATIYVSASPCSMCAKM 135
>gi|303233053|ref|ZP_07319728.1| dCMP deaminase family protein [Atopobium vaginae PB189-T1-4]
gi|302480828|gb|EFL43913.1| dCMP deaminase family protein [Atopobium vaginae PB189-T1-4]
Length = 161
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 35/110 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A+ ++ + V + + ++ G G P
Sbjct: 10 SWDEFFMRVAMIAAQRSK---DPHTQVGACLADTNDRILSVGY---NGTPSGINDDEFPW 63
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRS 85
HAE AL ++ + ATAYVTL PC +
Sbjct: 64 GTSDDPLYDKHNFVIHAEANALLNYRGTLKDMQNATAYVTLFPCQECAKM 113
>gi|302544137|ref|ZP_07296479.1| cytidine and deoxycytidylate deaminase [Streptomyces hygroscopicus
ATCC 53653]
gi|302461755|gb|EFL24848.1| cytidine and deoxycytidylate deaminase [Streptomyces himastatinicus
ATCC 53653]
Length = 166
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + T P V +++ DG V+GRG HAEV AL A
Sbjct: 25 MRLALEEAVRA-PETGDVP-VGAVVLGPDGTVLGRGRNEREAHGDPTAHAEVLALRAAAR 82
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 83 RLGGWRLTGCTLVVTLEPCAMC 104
>gi|328709609|ref|XP_001952788.2| PREDICTED: hypothetical protein LOC100161474 [Acyrthosiphon pisum]
Length = 373
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM+ A ++ + L V IV D ++G G
Sbjct: 69 SWDDLFMAIAFLTAKCNKDLKKK---VGACIVDSDKKIVGIGYNGMPTGCNNGNFLDHKF 125
Query: 51 GCPHAEVQAL-EEAGEEARGATAYVTLEPC 79
HAE+ A+ + + T +V+L PC
Sbjct: 126 AQCHAEMNAILNKNSIHIQNCTIFVSLYPC 155
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 34/101 (33%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------------- 53
FM+ A + V IV D ++G G G P
Sbjct: 223 FMAIAYLTAMRSK---DPVCQVGACIVNSDNTIVGTGY---NGMPTGCNDDEFPWGNNKN 276
Query: 54 ----------HAEVQAL--EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + + T YVT PC
Sbjct: 277 LTLNKFIYVCHAEMNAVFYKSSMINVKDCTLYVTRFPCIEC 317
>gi|284040576|ref|YP_003390506.1| cytosine deaminase [Spirosoma linguale DSM 74]
gi|283819869|gb|ADB41707.1| Cytosine deaminase [Spirosoma linguale DSM 74]
Length = 144
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
D FM A+ +R + + +VK+G ++ G H E+ L
Sbjct: 1 MDE-FMQEAINQARKSLSEGGI--PIGSSLVKNGELVASGHNKRVQENNPILHGEMDCLN 57
Query: 62 EAGE--EARGATAYVTLEPCSHY 82
AG R Y TL PC
Sbjct: 58 NAGRVGSFRNTVIYSTLMPCYMC 80
>gi|15673942|ref|NP_268117.1| hypothetical protein L18647 [Lactococcus lactis subsp. lactis
Il1403]
gi|12725002|gb|AAK06058.1|AE006426_4 hypothetical protein L18647 [Lactococcus lactis subsp. lactis
Il1403]
gi|326407497|gb|ADZ64568.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
CV56]
Length = 173
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG V FI + VD + + + +++G+G S G ++ + +G
Sbjct: 105 KNIWVVGGGEVIKLFIENHWVDELQVTIAPVLLGDG--ISLFPSGNYKEKLQLIDTKIYG 162
Query: 348 SDVCLEYIGKN 358
V L Y+ K
Sbjct: 163 QFVELHYLVKK 173
>gi|312220526|emb|CBY00467.1| similar to 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Leptosphaeria maculans]
Length = 273
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEG-------- 323
LL L + S+++EGG + + + + LVDS+I+ + +GEG
Sbjct: 179 WDDLLKALAREEIRSVMIEGGGRIINDLLGAKNFNLVDSVIVTIAPTWLGEGGVQVCPER 238
Query: 324 ----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
G P P+ VR G DV L K
Sbjct: 239 RMENGRPLPVG------RLTDVRWIPLGEDVVLCGRPKRW 272
>gi|299532967|ref|ZP_07046354.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
gi|298719191|gb|EFI60161.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
Length = 166
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRG--VTAYGG--CPHAEV 57
++ D ++ A+ + N LIV DG V+ R G HAE+
Sbjct: 9 LNDADGCYLREAIALADTARER--GNRPFGALIVAADGRVLARASNANGESGDCTAHAEL 66
Query: 58 QALEEAG-----EEARGATAYVTLEPCSHY 82
A+ A +E AT Y + EPC
Sbjct: 67 SAIRLASPLHSRDELAVATLYSSAEPCVMC 96
>gi|321260564|ref|XP_003195002.1| tRNA specific adenosine deaminase [Cryptococcus gattii WM276]
gi|317461474|gb|ADV23215.1| tRNA specific adenosine deaminase, putative [Cryptococcus gattii
WM276]
Length = 239
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--- 63
M AL + + ++ V C+ VK G I R HAE++A++
Sbjct: 1 MREALIMAEEAL--SNDEVPVGCVFVKGGQAIARARNRTNEWRNATLHAELEAIDHLLPS 58
Query: 64 -GEEARGATAYVTLEPCSHY 82
T YVT+EPC
Sbjct: 59 HPAPLSTITLYVTVEPCVMC 78
>gi|257870300|ref|ZP_05649953.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804464|gb|EEV33286.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 171
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + H + + L+D + + +++G G E G V G
Sbjct: 106 VWLVGGGKLLHPLLEADLIDEWYVQIAPVLLGTG--KRLFEPGEYTTRLQFVDMTQMGEL 163
Query: 350 VCLEYIGK 357
V + Y K
Sbjct: 164 VEIHYQRK 171
>gi|154305619|ref|XP_001553211.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
gi|150853143|gb|EDN28335.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10]
Length = 281
Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
H TL A S D+ I M P++G SK H LR++ DAIL+G+ T +AD+P L C
Sbjct: 37 PHTTLTFATSMDSQITMRPGIGSPLSGPASKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96
Query: 210 RLNGLQEH--------SPMRIILDPHFKLS------LDSKIIKTALLAPVIIVTENDDPV 255
R+ G+ + P +I+DP + + + + AP II + +D +
Sbjct: 97 RIEGVGGYGGGENLKGQPRPVIIDPKGRWNFGEDSKIFGLVKDGRGKAPWIITAQQEDEI 156
Query: 256 LALAFR--------KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR- 306
+++ + +L L G+ SL++EGGA + + +
Sbjct: 157 SFEKKDLLRATSGKFIHLSPDKEGRFSWQDILEALWKEGIESLMIEGGAGIINDMLAEGQ 216
Query: 307 -LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVC 351
+D +I+ + + +G+GG+ P G V+ G DV
Sbjct: 217 VFIDGVIVTIAPVWLGKGGVAVLPEREAPGNETFRLRGVKWIPLGEDVV 265
>gi|32490887|ref|NP_871141.1| hypothetical protein WGLp138 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166093|dbj|BAC24284.1| yfhC [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 151
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M AL + G + +++ +IG G HAE+ AL AG
Sbjct: 1 MYHALYLANKAKKFGEI----PIGSVVILKDNIIGEGWNQSIKKNDPSAHAEILALRSAG 56
Query: 65 EEARGATA-----YVTLEPCSHY 82
+ Y T+EPC
Sbjct: 57 KNINNYRLLNTEIYTTIEPCIMC 79
>gi|229169074|ref|ZP_04296789.1| ComE operon protein 2 [Bacillus cereus AH621]
gi|228614302|gb|EEK71412.1| ComE operon protein 2 [Bacillus cereus AH621]
Length = 188
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|82701279|ref|YP_410845.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosospira multiformis ATCC 25196]
gi|82409344|gb|ABB73453.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosospira multiformis ATCC 25196]
Length = 147
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
S F+ A+R ++ + S A ++V +G + GV + HAE++A+
Sbjct: 2 SQHETFLREAVRLAKNNRERGSR--PFAAVLVVEGQAVSTGVNDVVQSNDPTTHAEMEAV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
A + RG+ Y + PC
Sbjct: 60 RAASRKLGRPDLRGSIVYASGHPCPMC 86
>gi|332529894|ref|ZP_08405846.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis ATCC
19624]
gi|332040688|gb|EGI77062.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis ATCC
19624]
Length = 170
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV--TAYGG--CPHAE 56
++ D+ ++ A+ G N +IV + G V+ T+ G HAE
Sbjct: 12 TLNERDSSYLRQAIT--WSANGRARGNRPFGAVIVSEQGEVLAEAWCNTSETGDCTGHAE 69
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
A+ + AT Y + EPC
Sbjct: 70 TNAVRLVSPLVDRDTLARATLYSSAEPCVMC 100
>gi|297561765|ref|YP_003680739.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296846213|gb|ADH68233.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 269
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L RG+ +L EGG + F+ + L+D + L S ++G G P + G
Sbjct: 178 HIVDALAERGLYRVLTEGGPRLLAEFVAAGLLDELCLTLSPHLLGS-GPPRIVAGGPDAP 236
Query: 337 N 337
Sbjct: 237 G 237
>gi|328771384|gb|EGF81424.1| hypothetical protein BATDEDRAFT_87367 [Batrachochytrium
dendrobatidis JAM81]
Length = 182
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTA----YGGCPHAEV 57
+ D ++M+ AL+ + P V C+ V +IG+G G HAE
Sbjct: 5 FNQDDKKYMTMALQLASDA-YDVGEVP-VGCVFVHASKGIIGQGRNRTNESLNGVRHAEF 62
Query: 58 QALEE--------------AGEEARGATAYVTLEPCSHY 82
+A+++ YVT+EPC
Sbjct: 63 EAIDQIMSMRPLETDLDTYVKTTFPQTDVYVTVEPCIMC 101
>gi|209734934|gb|ACI68336.1| Deoxycytidylate deaminase [Salmo salar]
Length = 196
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP------------- 53
FM+ A ++ + V IV ++ ++G G GC
Sbjct: 35 YFMAVAFLSAQRSK---DPSSQVGACIVNRENKIVGIGYNGMPNGCDDDLLPWSCSANDR 91
Query: 54 ---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 92 LDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 130
>gi|21355527|ref|NP_650610.1| CG5292 [Drosophila melanogaster]
gi|7300237|gb|AAF55401.1| CG5292 [Drosophila melanogaster]
gi|18447473|gb|AAL68299.1| RE41712p [Drosophila melanogaster]
gi|220948458|gb|ACL86772.1| CG5292-PA [synthetic construct]
gi|220960450|gb|ACL92761.1| CG5292-PA [synthetic construct]
Length = 160
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE- 62
FM AL +R G V C+ V V+ RG HAE ++
Sbjct: 4 FMEEALVEARRARDAGEV----PVGCVFVHGDKVVARGGNEVNVHRNATRHAEFICIDAI 59
Query: 63 ----------AGEEARGATAYVTLEPCSHYG 83
A + T VT+EPC
Sbjct: 60 LASCRERRLPARQLFSEITVVVTVEPCIMCS 90
>gi|323454898|gb|EGB10767.1| hypothetical protein AURANDRAFT_22290 [Aureococcus
anophagefferens]
Length = 172
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYG----GCPHAEVQALEEAGE 65
M AL + V P V C+ V D V I HAE+ A++ A +
Sbjct: 1 MRRALELAEDAVAEQGEVP-VGCVFVNDNNVEIASAANETNEAMCATRHAELVAIDGALK 59
Query: 66 E--ARG-------ATAYVTLEPCSHY 82
ARG YVT EPC
Sbjct: 60 HSAARGQPLDWTRCALYVTCEPCIMC 85
>gi|305676349|ref|YP_003868021.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|305414593|gb|ADM39712.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 174
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S +L PV + V + K L ++ +
Sbjct: 53 STYEHVKILTPVFPYQDKTCYVFTRTPGSYQDEHVTFINEGAKAFTDRLKLDKGLNIWIA 112
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA + ++F+ +D I+ +V+G GIP E E FG V L
Sbjct: 113 GGAELVNAFMKEDAIDEFIITVIPVVLGS-GIPLFHE-LTNETKLRLKGMKQFGQAVQLY 170
Query: 354 YIGK 357
Y+
Sbjct: 171 YVRP 174
>gi|317055943|ref|YP_004104410.1| CMP/dCMP deaminase zinc-binding protein [Ruminococcus albus 7]
gi|315448212|gb|ADU21776.1| CMP/dCMP deaminase zinc-binding protein [Ruminococcus albus 7]
Length = 158
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAY-GGC---PHAEVQAL 60
D +M + V ++VK G ++GRG G HAE+ A+
Sbjct: 4 DEMYMRK--ALELAALAADEDEVPVGAVVVKKSTGEIVGRGFNRREYGRSPLTHAEIVAI 61
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+EA + G +VTLEPC
Sbjct: 62 DEASRKLGGWRLIDCELFVTLEPCPMC 88
>gi|296331362|ref|ZP_06873834.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|296151477|gb|EFG92354.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
6633]
Length = 174
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S +L PV + V + K L ++ +
Sbjct: 53 STYEHVKILTPVFPYQDKTCYVFTRTPGSYQDEHVTFINEGAKAFTDRLKLDKGLNIWIA 112
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA + ++F+ +D I+ +V+G GIP E E FG V L
Sbjct: 113 GGAELVNAFMKEDAIDEFIITVIPVVLGS-GIPLFHE-LTNETKLRLKGMKQFGQAVQLY 170
Query: 354 YIGK 357
Y+
Sbjct: 171 YVRP 174
>gi|255935949|ref|XP_002559001.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583621|emb|CAP91636.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 607
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ H+TL A S D+ I + ++G +K H LR++ DAILVG+GTVLAD+P L
Sbjct: 362 EFPHVTLSYASSMDSKISLQPGMQTVLSGPEAKLMTHYLRSRHDAILVGVGTVLADNPGL 421
Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTENDDP 254
CR + P +I+DP + + + AP ++++
Sbjct: 422 NCRLEGAGGFGGLGRMWQPRPVIIDPMGRWPVHPECRMLRTAVEGKGKAPWVVLSPGAQI 481
Query: 255 VLALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
K + + L G+ S+++EGG V +N
Sbjct: 482 NPQTLVMLKGYGGDFLRIVEYNQHWRLRWEAVFRALASEGIKSVMIEGGGTVLSELLNPE 541
Query: 305 -SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
+ +DSII+ + +G GG+ SP N V+ G +V +
Sbjct: 542 YTSFIDSIIVTVAPTYLGRGGVNVSPDSKQDQEGTPNAALNPRDVKWMPLGQNVIM 597
>gi|118616295|ref|YP_904627.1| hypothetical protein MUL_0449 [Mycobacterium ulcerans Agy99]
gi|118568405|gb|ABL03156.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 102
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F A+ F+R +V A +IVKDG V+ HAE+ A+ A
Sbjct: 4 FAQRAIDFARLNVAEGGR--PFATVIVKDGQVLAESANKVAQTNDPTAHAEILAIRAACT 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E+ G T YV PC
Sbjct: 62 KLGTEQLFGTTFYVLAHPCPMC 83
>gi|255027097|ref|ZP_05299083.1| hypothetical protein LmonocytFSL_13573 [Listeria monocytogenes FSL
J2-003]
Length = 91
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ R +D ++ + I++G+G PL E E FG
Sbjct: 24 IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 80
Query: 350 VCLEY 354
L Y
Sbjct: 81 AQLTY 85
>gi|284803011|ref|YP_003414876.1| hypothetical protein LM5578_2768 [Listeria monocytogenes 08-5578]
gi|284996152|ref|YP_003417920.1| hypothetical protein LM5923_2717 [Listeria monocytogenes 08-5923]
gi|284058573|gb|ADB69514.1| hypothetical protein LM5578_2768 [Listeria monocytogenes 08-5578]
gi|284061619|gb|ADB72558.1| hypothetical protein LM5923_2717 [Listeria monocytogenes 08-5923]
Length = 175
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ R +D ++ + I++G+G PL E E FG
Sbjct: 108 IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 164
Query: 350 VCLEY 354
L Y
Sbjct: 165 AQLTY 169
>gi|16804610|ref|NP_466095.1| hypothetical protein lmo2572 [Listeria monocytogenes EGD-e]
gi|47097116|ref|ZP_00234685.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|224500472|ref|ZP_03668821.1| hypothetical protein LmonF1_12714 [Listeria monocytogenes Finland
1988]
gi|224503636|ref|ZP_03671943.1| hypothetical protein LmonFR_14218 [Listeria monocytogenes FSL
R2-561]
gi|254829526|ref|ZP_05234213.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254831003|ref|ZP_05235658.1| hypothetical protein Lmon1_06573 [Listeria monocytogenes 10403S]
gi|254900975|ref|ZP_05260899.1| hypothetical protein LmonJ_14211 [Listeria monocytogenes J0161]
gi|254913811|ref|ZP_05263823.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254938200|ref|ZP_05269897.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|16412060|emb|CAD00650.1| lmo2572 [Listeria monocytogenes EGD-e]
gi|47014521|gb|EAL05485.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|258601941|gb|EEW15266.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258610812|gb|EEW23420.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591828|gb|EFG00163.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 174
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ R +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAKLVQQFLKERAIDRFVITIAPIILGKG---IPLFEEDQEHALELEEVTRFGQF 163
Query: 350 VCLEY 354
L Y
Sbjct: 164 AQLTY 168
>gi|50285951|ref|XP_445404.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524708|emb|CAG58310.1| unnamed protein product [Candida glabrata]
Length = 584
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALE----- 61
++M A+ + G T T SV ++V V+ G + G HAE ALE
Sbjct: 436 RKYMVQAIEEADK-CGPTKTAFSVGAVLVNGTEVLSVGHSRELPGNTHAEQCALEKYFET 494
Query: 62 -EAGEEARGATAYVTLEPCSH 81
+ G + T+EPCS
Sbjct: 495 HNTDKVPPGTVIFTTMEPCSF 515
>gi|23097829|ref|NP_691295.1| hypothetical protein OB0374 [Oceanobacillus iheyensis HTE831]
gi|22776053|dbj|BAC12330.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 195
Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 6/148 (4%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
++ I + SK + + V + + +
Sbjct: 47 HIYGRKMYENMSIWPSKGQAPDASKEERDWAKHW-MKVKKYVISSKLKQEDLQWNTELLN 105
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
L + G SL GGA++A F + L+D + L+ I++G+G P
Sbjct: 106 GDMVSSILQLKKIRGGDISL---GGASLAEEFFHYDLIDEVWLFIFPILLGDGKRMFP-- 160
Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
++N+ F V L Y N
Sbjct: 161 TMQNQRNYHLKEYKRFDDTVFLNYERGN 188
>gi|229013547|ref|ZP_04170680.1| ComE operon protein 2 [Bacillus mycoides DSM 2048]
gi|229062025|ref|ZP_04199350.1| ComE operon protein 2 [Bacillus cereus AH603]
gi|228717177|gb|EEL68852.1| ComE operon protein 2 [Bacillus cereus AH603]
gi|228747707|gb|EEL97577.1| ComE operon protein 2 [Bacillus mycoides DSM 2048]
Length = 188
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|145592768|ref|YP_001157065.1| CMP/dCMP deaminase, zinc-binding [Salinispora tropica CNB-440]
gi|145302105|gb|ABP52687.1| tRNA-adenosine deaminase [Salinispora tropica CNB-440]
Length = 153
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 11 MSAALRFSRWHVGLTS------TNP-----SVACLIV-KDGIVIGRGVTAY----GGCPH 54
M AL + T P V L++ DG + G H
Sbjct: 1 MRRALEVAVTGAETTITAADDIPVPAADDIPVGALLLGPDGAELATGRNERELTGDPTAH 60
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AEV AL A G T VTLEPC+
Sbjct: 61 AEVLALRRAAGRLGRWRLDGCTLVVTLEPCTMC 93
>gi|54302697|ref|YP_132690.1| putative deoxycytidylate deaminase [Photobacterium profundum SS9]
gi|90414645|ref|ZP_01222617.1| putative deoxycytidylate deaminase [Photobacterium profundum 3TCK]
gi|46916121|emb|CAG22890.1| putative deoxycytidylate deaminase [Photobacterium profundum SS9]
gi|90324278|gb|EAS40850.1| putative deoxycytidylate deaminase [Photobacterium profundum 3TCK]
Length = 149
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 42/145 (28%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I + ++ G Y G
Sbjct: 2 ISKWAQRFFQMA-EL----VGSWSKDPSTQVGAVITEHNRIVSVGFNGYPHGISDSANTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + G +VT PC + I
Sbjct: 57 DRDMKLLKTLHAEENAILFAKRDLSGCEIWVTHFPCPNCAAKI-IQTGISMVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
+Q G+ VD
Sbjct: 116 FLSRWGDKIKISQGMFTQAGVDVDW 140
>gi|169350292|ref|ZP_02867230.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
gi|169293075|gb|EDS75208.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552]
Length = 241
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----- 332
+ + + +L++ GG + SFI + L D + L + + G PS E
Sbjct: 155 MEKLYHKFNIKTLMLGGGGVLNWSFIQTGLCDELSLVMAPVADGASQSPSIFETKEDLTS 214
Query: 333 YLEKNFMCVRRDYFGS-DVCLEYIGKN 358
F + + + L Y+ KN
Sbjct: 215 DKPVGFELKNVEVLENGGIWLRYLIKN 241
>gi|160897646|ref|YP_001563228.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
gi|160363230|gb|ABX34843.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
Length = 153
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE- 61
R + A++ + + L+ ++G ++ GV + HAE+QAL
Sbjct: 6 HIRLLRHAVQLAHDNRLRGGR--PFGALLAREGQILSTGVNEIVQSHDPSAHAEMQALRA 63
Query: 62 ----EAGEEARGATAYVTLEPCSHY 82
+A G T Y + PC
Sbjct: 64 GTRAQANPSLAGCTIYASGHPCPMC 88
>gi|169781288|ref|XP_001825107.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
oryzae RIB40]
gi|83773849|dbj|BAE63974.1| unnamed protein product [Aspergillus oryzae]
Length = 273
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI----PS 327
+L L G+ S+++EGG V +S + + LV+S+I+ + +G+GG+
Sbjct: 183 WTAVLECLRNEGLRSVMIEGGGTVINSLLEPGWAHLVNSVIVTIAPTWLGQGGVVVSPRR 242
Query: 328 PLEEGYL--EKNFMCVRRDYFGSDVCL 352
+E + V+ FG DV L
Sbjct: 243 RVEGDAVVPAARLRDVKWYPFGEDVVL 269
>gi|327439586|dbj|BAK15951.1| deoxycytidylate deaminase [Solibacillus silvestris StLB046]
Length = 191
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 25/101 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M ++D FM+ + + T + +V IV++ +I G + G
Sbjct: 1 MERITWDQFFMAQSHLLALRS---TCSRLAVGATIVREKRIIAGGYNGSISGDEHCIEEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPC 79
HAE AL + G A GA YVT PC
Sbjct: 58 CYVVDNHCVRTVHAETNALLQCAKYGTPANGADLYVTHFPC 98
>gi|323465756|gb|ADX69443.1| DCMP deaminase [Lactobacillus helveticus H10]
Length = 159
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYNC 102
>gi|226306344|ref|YP_002766304.1| hypothetical protein RER_28570 [Rhodococcus erythropolis PR4]
gi|226185461|dbj|BAH33565.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 249
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L R + +L EGG ++ I VD + + S ++G L +
Sbjct: 164 DIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDELCITTSPQLVGSKVGRISLSPNAMPT 223
Query: 337 NFMCVRRDYFGS-D--VCLEYIGKNLC 360
+ G D + ++ +
Sbjct: 224 SMHPAHI--LGDSDGTILTRWVRQQPR 248
>gi|157693059|ref|YP_001487521.1| dCMP deaminase [Bacillus pumilus SAFR-032]
gi|157681817|gb|ABV62961.1| dCMP deaminase [Bacillus pumilus SAFR-032]
Length = 189
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S++ FM+ + + T +V IV+D +I G
Sbjct: 1 MERISWNQYFMAQSHLLALRS---TCERLAVGATIVRDKRIIAGGYNGSIAGDVHCADVG 57
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVIDHHCVRTIHAEMNAILQCAKFGAPTADAEIYVTHFPCLQC 101
>gi|146339390|ref|YP_001204438.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bradyrhizobium sp. ORS278]
gi|146192196|emb|CAL76201.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bradyrhizobium sp. ORS278]
Length = 239
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ L + GV LL+EGG V +F+ + LVD + L V G G P +
Sbjct: 137 PRVLDILSRELGVKRLLLEGGGHVNGTFLRAGLVDELNLVLCPAVDGAKGAPMVFDSSEA 196
Query: 335 EKN-------FMCVRRDYF-GSDVCLEY 354
E + G + L Y
Sbjct: 197 ESDQRAPVTAMSLESTTALEGGALWLRY 224
>gi|221068807|ref|ZP_03544912.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
gi|220713830|gb|EED69198.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
Length = 162
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE-- 61
+++ ++R + G S ++V+DG ++ R V HAE+QAL
Sbjct: 9 KYLLESIRLAMGNVRGRESATWPFGAVLVRDGQILARAVNQVDELCDPSAHAEMQALRIG 68
Query: 62 ---EAGEEARGATAYVTLEPCSHY 82
+ + GA Y + PCS
Sbjct: 69 AKAQGSTDLSGAVMYASGYPCSMC 92
>gi|110598481|ref|ZP_01386752.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
gi|110339931|gb|EAT58435.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
Length = 177
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+ FMS A SR + +IV+D ++ G
Sbjct: 28 WHEYFMSVAHLISRRATCTRGH---IGAVIVRDHNILSTGYNGAPSGLPHCNETTCRIYR 84
Query: 47 -TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
T G HAE+ A+ A G A Y+T PC H
Sbjct: 85 STHPDGTVEENCVNTIHAEINAIAMAAKHGVSIGEADIYITSSPCIHC 132
>gi|50742655|ref|XP_419709.1| PREDICTED: similar to DEADC1 protein [Gallus gallus]
Length = 172
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 28/143 (19%)
Query: 7 DAR-FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
D +M A ++ + G V CL+V DG IG+G HAE+ A
Sbjct: 3 DEAAWMERAFSMAQEALEAGEV----PVGCLLVYDGAAIGKGRNEVNETKNATRHAEMVA 58
Query: 60 LEEA-----------GEEARGATAYVTLEPCSHYG------RSPPCAQFIIECGIRRVVV 102
+++ E + YVT+EPC + P
Sbjct: 59 IDQVLEWCQQHKKDHEEVFSHSVLYVTVEPCIMCAAALRLMKIPRVVYGCRNERFGGCGS 118
Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
+ + G + G
Sbjct: 119 VLSISSDDIVDTGEPFECIAGYR 141
>gi|326942109|gb|AEA18005.1| ComE operon protein 2 [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 185
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|294678027|ref|YP_003578642.1| tRNA-specific adenosine deaminase [Rhodobacter capsulatus SB
1003]
gi|294476847|gb|ADE86235.1| tRNA-specific adenosine deaminase [Rhodobacter capsulatus SB
1003]
Length = 149
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V +IV DG VI R HAE+ A+ A E G YVTLEPC
Sbjct: 24 PVGAVIVAPDGRVIARAGNRTRELNDPTAHAEILAIRAACAALGSERLAGHDLYVTLEPC 83
Query: 80 SHY 82
Sbjct: 84 PMC 86
>gi|294953511|ref|XP_002787800.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902824|gb|EER19596.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 319
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+FM AA+ + V I ++ +V+ HAE+ A+
Sbjct: 32 PSHEQFMEAAVLSATTGV-KLKEGGPFGACITRNDVVVCCAHNTFFSDRDPTCHAEMNAI 90
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A ++ G Y + EPC
Sbjct: 91 RMAMHLLKTDDLAGCVIYSSFEPCPMC 117
>gi|255280581|ref|ZP_05345136.1| putative RibD domain protein [Bryantella formatexigens DSM 14469]
gi|255269046|gb|EET62251.1| putative RibD domain protein [Bryantella formatexigens DSM 14469]
Length = 235
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCV 341
+ ++L+ GG V +FI +VD + L + G+ P+ E+ L F
Sbjct: 159 INTILICGGGTVNWTFIQQGVVDELSLILAPAADGDPSTPTVFEKSELLAVTAPVEFQLK 218
Query: 342 RRDYF-GSDVCLEYIGK 357
+ S V L Y+ K
Sbjct: 219 NAEQLRDSGVWLTYLVK 235
>gi|123386433|ref|XP_001299274.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121880079|gb|EAX86344.1| hypothetical protein TVAG_069050 [Trichomonas vaginalis G3]
Length = 377
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
+ I ++ + + L VEGG + SF+N+ +VD
Sbjct: 126 PQYKNYLRKHQISYIVAGKEQLDWKLLVMKLKEKFNINVLAVEGGGIINWSFLNAGIVDE 185
Query: 311 IILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGK 357
+ + + G SP F D G + + Y K
Sbjct: 186 LSICLTAAADGSNDTITLFEKSPYFPKGSPVEFELKAVDKIGAGGLWIRYTPK 238
>gi|317011639|gb|ADU85386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Helicobacter pylori SouthAfrica7]
Length = 344
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/346 (14%), Positives = 96/346 (27%), Gaps = 18/346 (5%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + + L NPSVAC ++ K+ ++ V PHAEV A + A + R
Sbjct: 8 LEICLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLAAQSALKILRP 67
Query: 69 --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ +P G + + + + + + K V
Sbjct: 68 SLKSDLEKLEDPKILSGFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E K++H+ S +N + N L
Sbjct: 128 VIATEENEAKKGGLAR----LKKAHVEAFTCQSLENKAKDLLLPFRIMEKKGRFNLFKLA 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
+ G T T + + LD++
Sbjct: 184 LRMNGDYKHGKITGQKS-AIFTHNQRATCDTLIVSGKTIRTDDPLLDARFCDGFYHNKNP 242
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + R + + K + + +G +EGG + S +
Sbjct: 243 NIAILSKRLTNPNSRVFSAPNRLVNTFYNPK--DLPLEKGFN--FIEGGWELFESLRDK- 297
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
+D ++L+ VIGE P L+ + ++ L
Sbjct: 298 -IDMLLLHAHASVIGESFNPFALKT---PFKGRLLHTQILENEALL 339
>gi|300711978|ref|YP_003737792.1| cytosine deaminase [Halalkalicoccus jeotgali B3]
gi|299125661|gb|ADJ16000.1| cytosine deaminase [Halalkalicoccus jeotgali B3]
Length = 280
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE----VQA 59
RFM A+ +R NP ++V DG ++ T H E A
Sbjct: 139 ERFMRRAIELAREAA-ERGDNP-FGSVLVHDGEIVMEDSNRVATEDDIRRHPELTLARLA 196
Query: 60 LEEAGEEAR-GATAYVTLEPCSHY 82
+ E E R T Y + EPC
Sbjct: 197 VRELDPEIRSETTMYTSTEPCPMC 220
>gi|328465174|gb|EGF36442.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes 1816]
Length = 174
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 163
Query: 350 VCLEYIG 356
L Y
Sbjct: 164 AQLTYKK 170
>gi|154251101|ref|YP_001411925.1| zinc-binding CMP/dCMP deaminase [Parvibaculum lavamentivorans DS-1]
gi|154155051|gb|ABS62268.1| CMP/dCMP deaminase zinc-binding [Parvibaculum lavamentivorans DS-1]
Length = 164
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V +G V+ R HAE+ A+ A E G YVTLEPC
Sbjct: 38 PVGAVVVDGEGRVLARAGNRTLELKDPTAHAELLAIRAACAEIGSERLIGCDLYVTLEPC 97
Query: 80 SHY 82
+
Sbjct: 98 AMC 100
>gi|161506809|ref|YP_001576763.1| dCMP deaminase [Lactobacillus helveticus DPC 4571]
gi|260102228|ref|ZP_05752465.1| cytidine/deoxycytidylate deaminase [Lactobacillus helveticus DSM
20075]
gi|160347798|gb|ABX26472.1| DCMP deaminase [Lactobacillus helveticus DPC 4571]
gi|260083969|gb|EEW68089.1| cytidine/deoxycytidylate deaminase [Lactobacillus helveticus DSM
20075]
Length = 159
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDNRIIGTGYNGSVSGQPHCDEVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTDDTEIYVTHFPCYNC 102
>gi|304317923|ref|YP_003853068.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779425|gb|ADL69984.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 147
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + + T V +IVKD +I G
Sbjct: 4 SWDEYFM-MVVDVVKTR--STCLRRQVGAVIVKDKHIISTGYNGAPTGLKHCEEVGCMRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + AT YV+ PCS +
Sbjct: 61 NLNIPSGERHELCRGTHAEQNAIIQAALNGVSTKDATIYVSASPCSMCAKM 111
>gi|302837985|ref|XP_002950551.1| hypothetical protein VOLCADRAFT_81171 [Volvox carteri f.
nagariensis]
gi|300264100|gb|EFJ48297.1| hypothetical protein VOLCADRAFT_81171 [Volvox carteri f.
nagariensis]
Length = 280
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 34/103 (33%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT------------------AYGG 51
M+ A + N V +IV D I++ G + G
Sbjct: 1 MALAFLSAERSK---DPNKQVGAVIVNVDNIILAIGYNGFPRGCCDSDLPWAKEALSSDG 57
Query: 52 CP-----------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
P HAE A L + GA YVT+ PC+
Sbjct: 58 NPDPLATKYPYVVHAEANALLNKNAASVAGARVYVTMFPCNEC 100
>gi|296504819|ref|YP_003666519.1| ComE operon protein 2 [Bacillus thuringiensis BMB171]
gi|296325871|gb|ADH08799.1| ComE operon protein 2 [Bacillus thuringiensis BMB171]
Length = 185
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|290579815|ref|YP_003484207.1| putative deoxycytidylate deaminase [Streptococcus mutans NN2025]
gi|254996714|dbj|BAH87315.1| putative deoxycytidylate deaminase [Streptococcus mutans NN2025]
Length = 150
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--------- 51
M S+ FM+ A S+ + V ++VK+ +I G
Sbjct: 2 MNRLSWQDYFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVG 58
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G A YVT PC +
Sbjct: 59 HEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINC 102
>gi|225714908|gb|ACO13300.1| Deoxycytidylate deaminase [Esox lucius]
Length = 201
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 34 EYFMAVAFLPAQRSK---DPSSQVGACIVNPENKIVGIGYNGMPNGCDDDLLPWSRYADD 90
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 91 RLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 130
>gi|255941100|ref|XP_002561319.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585942|emb|CAP93679.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 148
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAGEEA- 67
A+ ++ + + +V KDG ++GRG G HAE+ ALE +G
Sbjct: 10 AVEEAKQGLSEGGV--PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMSALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|218234584|ref|YP_002369136.1| ComE operon protein 2 [Bacillus cereus B4264]
gi|218162541|gb|ACK62533.1| ComE operon protein 2 [Bacillus cereus B4264]
Length = 185
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|19553100|ref|NP_601102.1| hypothetical protein NCgl1821 [Corynebacterium glutamicum ATCC
13032]
gi|62390735|ref|YP_226137.1| hypothetical protein cg2076 [Corynebacterium glutamicum ATCC 13032]
gi|21324665|dbj|BAB99289.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
glutamicum ATCC 13032]
gi|41326073|emb|CAF20236.1| RIBOFLAVIN SPECIFIC DEAMINASE [Corynebacterium glutamicum ATCC
13032]
Length = 232
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ +D++ A + P+II +D +I + + +
Sbjct: 95 IAVMSGSLNFDVDTRFFLEAEVPPIIITDNSDQA-KQQRLVDAGAQVIEVETLTAEVGVE 153
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L G + EGGA + + + LVD + G P+ + F
Sbjct: 154 KLRSLGYARIDCEGGATLYGQMLAADLVDVWHHTIDPTLSGSVERPTVKGGDDAPRRFAL 213
Query: 341 VRRDYFGSD--VCLEYIG 356
+ D + L Y
Sbjct: 214 EHV-FVDDDSTLFLRYKR 230
>gi|145222554|ref|YP_001133232.1| hypothetical protein Mflv_1964 [Mycobacterium gilvum PYR-GCK]
gi|315443001|ref|YP_004075880.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
Spyr1]
gi|145215040|gb|ABP44444.1| bifunctional deaminase-reductase domain protein [Mycobacterium
gilvum PYR-GCK]
gi|315261304|gb|ADT98045.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp.
Spyr1]
Length = 235
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G+ +L EGG + + + LVD + + + + G + S M + R
Sbjct: 162 GMERVLCEGGPTLLDELVTADLVDELCVTLAPRLAGSQPVGSGTPADIAAPAPMRLGRVL 221
Query: 346 FGSD--VCLEYIG 356
D + L Y
Sbjct: 222 VDPDGYLFLTYRR 234
>gi|237712024|ref|ZP_04542505.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229453345|gb|EEO59066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 225
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
+ + + GV L + GG + SF+ + L+D + + + + G G + +
Sbjct: 138 PQAMELLHEHFGVERLAIVGGGHICGSFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISR 197
Query: 334 ---LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 198 MECNPYKLKLESVEQWETDIVWLRYKVK 225
>gi|224283917|ref|ZP_03647239.1| Cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB
41171]
gi|313141068|ref|ZP_07803261.1| cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB
41171]
gi|313133578|gb|EFR51195.1| cytosine/adenosine deaminase [Bifidobacterium bifidum NCIMB
41171]
Length = 150
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----PHA 55
+ D M A+ G V +++ + G VIGRG HA
Sbjct: 1 MGELDEA-MCEAIALGERAGKQGDV----PVGAVVLDERGTVIGRGRNRREAGHDPLAHA 55
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSP 86
E++A+ EA + T VTLEPC +
Sbjct: 56 EIEAMREAAQARGDWNLADCTLVVTLEPCPMCAGAC 91
>gi|206969676|ref|ZP_03230630.1| ComE operon protein 2 [Bacillus cereus AH1134]
gi|218899494|ref|YP_002447905.1| ComE operon protein 2 [Bacillus cereus G9842]
gi|206735364|gb|EDZ52532.1| ComE operon protein 2 [Bacillus cereus AH1134]
gi|218543217|gb|ACK95611.1| ComE operon protein 2 [Bacillus cereus G9842]
Length = 185
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|323340654|ref|ZP_08080906.1| competence protein comEB [Lactobacillus ruminis ATCC 25644]
gi|323091777|gb|EFZ34397.1| competence protein comEB [Lactobacillus ruminis ATCC 25644]
Length = 159
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S++ FM A+ S T T +V ++V+D +I G
Sbjct: 7 SWNQYFMLQAILLSLRS---TCTRLAVGAILVRDNRIIAGGYNGSVSGDVHCLDEGCYVV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G GA YVT PC +
Sbjct: 64 DGHCVRTIHAEMNAVLQCAKFGSGTDGAVIYVTDFPCLQCTKM 106
>gi|47214735|emb|CAG01270.1| unnamed protein product [Tetraodon nigroviridis]
Length = 114
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 10 EYFMAVAFLSAQRSK---DPSSQVGACIVNPENKIVGIGYNGMPNGCDDDLLPWSRSAED 66
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G T YV L PC+
Sbjct: 67 HLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNEC 106
>gi|313606659|gb|EFR83417.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
monocytogenes FSL F2-208]
Length = 175
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 108 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 164
Query: 350 VCLEY 354
L Y
Sbjct: 165 AQLTY 169
>gi|261188103|ref|XP_002620468.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
gi|239593343|gb|EEQ75924.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081]
gi|239609085|gb|EEQ86072.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ER-3]
gi|327356427|gb|EGE85284.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ATCC 18188]
Length = 666
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 31/236 (13%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ +TL A S D + + ++G +K H LR++ DAIL+G+GT +AD+P L
Sbjct: 377 QFPFVTLTYASSMDAKVSLFPGIQTALSGPETKVMTHYLRSRHDAILIGVGTAIADNPGL 436
Query: 208 TCRLNGLQ-------EHSPMRIILDPHFKLSLDSKII------KTALLAPVIIVTENDDP 254
CRL G P II+DP + D + AP +IV+ +
Sbjct: 437 NCRLAGAGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKAGKGKAPWVIVSPGANI 496
Query: 255 VL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304
+ + + +L L GVTS+++EGGA V +N
Sbjct: 497 QPAKVLTLKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGVTSVMIEGGATVISELLNPE 556
Query: 305 -SRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
VDS+I+ + +G GG+ + N ++ G DV +
Sbjct: 557 YVDFVDSLIITLAPTFLGRGGVGVSPDAKKDNTGKPISALNPYDIKWQPLGQDVVM 612
>gi|148232294|ref|NP_001084625.1| dCMP deaminase [Xenopus laevis]
gi|46249834|gb|AAH68731.1| MGC81193 protein [Xenopus laevis]
Length = 190
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 33/153 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 28 EYFMAVAFLAAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCHDDVLPWARTAED 84
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ A+ + + +G T YV L PC + I V +
Sbjct: 85 RLDTKYPYVCHAELNAIMNKNTADVKGCTMYVALFPC-----NECAKLVIQAGIKEVVFM 139
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
D GI + K
Sbjct: 140 SDKYHDNPEMTAARHMFDLAGIKYTNFIPKHRK 172
>gi|17557019|ref|NP_498980.1| hypothetical protein ZK643.2 [Caenorhabditis elegans]
gi|267457|sp|P30648|DCTD_CAEEL RecName: Full=Probable deoxycytidylate deaminase; AltName:
Full=dCMP deaminase
gi|3881681|emb|CAA77473.1| C. elegans protein ZK643.2, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 197
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
RF+ A S N V C+IV KD ++ G G P
Sbjct: 49 KKHQRFLRIAKVTSLRSK---DPNTQVGCVIVDKDNCIVSVGY---NGFPIGVDDDVFRW 102
Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A + + T YVTL PC+ +
Sbjct: 103 DKEDPEDNKHLYVVHAEMNAIINKRCTTLHDCTVYVTLFPCNKCAQM 149
>gi|46908744|ref|YP_015133.1| hypothetical protein LMOf2365_2545 [Listeria monocytogenes serotype
4b str. F2365]
gi|47093580|ref|ZP_00231339.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|217963323|ref|YP_002349001.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
monocytogenes HCC23]
gi|226225119|ref|YP_002759226.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes Clip81459]
gi|254826328|ref|ZP_05231329.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254854398|ref|ZP_05243746.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254932185|ref|ZP_05265544.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254993354|ref|ZP_05275544.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes FSL
J2-064]
gi|255519916|ref|ZP_05387153.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes FSL
J1-175]
gi|300766071|ref|ZP_07076039.1| hypothetical protein LMHG_12616 [Listeria monocytogenes FSL N1-017]
gi|46882016|gb|AAT05310.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47018051|gb|EAL08825.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|217332593|gb|ACK38387.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
monocytogenes HCC23]
gi|225877581|emb|CAS06295.1| Putative Chain A, Dihydrofolate Reductase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607797|gb|EEW20405.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293583742|gb|EFF95774.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293595569|gb|EFG03330.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513217|gb|EFK40296.1| hypothetical protein LMHG_12616 [Listeria monocytogenes FSL N1-017]
gi|307572099|emb|CAR85278.1| dihydrofolate reductase, putative [Listeria monocytogenes L99]
gi|328469832|gb|EGF40745.1| Chain A, Dihydrofolate Reductase [Listeria monocytogenes 220]
gi|332313002|gb|EGJ26097.1| Riboflavin biosynthesis protein [Listeria monocytogenes str. Scott
A]
Length = 174
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQF 163
Query: 350 VCLEY 354
L Y
Sbjct: 164 AQLTY 168
>gi|311065133|ref|YP_003971859.1| cytosine/adenosine deaminase [Bifidobacterium bifidum PRL2010]
gi|310867453|gb|ADP36822.1| Cytosine/adenosine deaminase [Bifidobacterium bifidum PRL2010]
Length = 150
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHA 55
+ D M A+ G V +++ + G VIGRG HA
Sbjct: 1 MGELDEA-MCEAIALGERAGKQGDV----PVGAVVLDERGTVIGRGRNRREEGHDPLAHA 55
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSP 86
E++A+ EA + T VTLEPC +
Sbjct: 56 EIEAMREAAQARGDWNLADCTLVVTLEPCPMCAGAC 91
>gi|145295799|ref|YP_001138620.1| hypothetical protein cgR_1724 [Corynebacterium glutamicum R]
gi|140845719|dbj|BAF54718.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 232
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 4/138 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ +D++ A + P+II +D +I + + +
Sbjct: 95 IAVMSGSLNFDVDTRFFLEAEVPPIIITDNSDQ-TKQQRLVDAGAQVIEVETLTAEVGVE 153
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L G + EGGA + + + LVD + G P+ + + F
Sbjct: 154 KLRSLGYARIDCEGGATLYGQMLAADLVDVWHHTIDPTLSGSVERPTVKGDDDAPRRFAL 213
Query: 341 VRRDYFGSD--VCLEYIG 356
+ D + L Y
Sbjct: 214 EHV-FVDDDSTLFLRYKR 230
>gi|134102530|ref|YP_001108191.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
gi|291007103|ref|ZP_06565076.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
gi|133915153|emb|CAM05266.1| guanine deaminase [Saccharopolyspora erythraea NRRL 2338]
Length = 188
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM+ A+R + V P +I ++ RG H EV+A+ +
Sbjct: 3 DEEFMAEAVRLATESVVNGWGGP-FGAVITDGERIVARGQNRVLLTGDPTAHGEVEAIRK 61
Query: 63 ------------AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
A E G+T + P P A+ + I
Sbjct: 62 AVQVLNPDAPSIAEERQNGSTLALVPRPEGSSDPMPARARMLKGHSIYTSGAPCPMCM 119
>gi|158316923|ref|YP_001509431.1| hypothetical protein Franean1_5167 [Frankia sp. EAN1pec]
gi|158112328|gb|ABW14525.1| bifunctional deaminase-reductase domain protein [Frankia sp.
EAN1pec]
Length = 270
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 1/135 (0%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
++ +L D+++ A+ ++ I + + + + L L
Sbjct: 136 VVSGRLELDPDARLFTAAVRPLLLTCEAAPPLRRRALEPVAEIVVCGDETVEPRAALDAL 195
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCV 341
RG+ +L EGG + F + L+D + L + ++ G G + +
Sbjct: 196 AERGLLRVLTEGGPRLHAQFAQAGLLDELCLTLAPVLAGPGRLGLMQGPVWPAPVGLRLG 255
Query: 342 RRDYFGSDVCLEYIG 356
+ + L Y+
Sbjct: 256 QVLEEDGALFLRYLR 270
>gi|320105272|ref|YP_004180862.1| bifunctional deaminase-reductase domain-containing protein
[Terriglobus saanensis SP1PR4]
gi|319923793|gb|ADV80868.1| bifunctional deaminase-reductase domain protein [Terriglobus
saanensis SP1PR4]
Length = 187
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
++ + GGA + SF+ LVD I + +++G+G + +E+ + +
Sbjct: 112 YKNIWLVGGAILCQSFLRLGLVDEIRWMIAPVILGDG--LHLFGDSGMEQKWQLKNVVAY 169
Query: 347 GSD-VCLEYIGKN 358
++ V L Y ++
Sbjct: 170 KNNFVKLSYRRQS 182
>gi|154150451|ref|YP_001404069.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Methanoregula boonei 6A8]
gi|153999003|gb|ABS55426.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoregula
boonei 6A8]
Length = 226
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + ++ +H RA DAI+VG T+ D+ LT RL + P
Sbjct: 22 LTLKKGASSKILMKYMAHETEILLHETRAAYDAIMVGANTIRIDNSFLTVRLVPGKS--P 79
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-- 277
+R+I + LD+ ++ +I V+E A R K +N+ ++
Sbjct: 80 LRVIPCSMADIPLDANVL-GPDAPTLIAVSEKAPKDRVEAIRAKGVNVAVAGKDHVELSL 138
Query: 278 -LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE- 335
+ + GV L++EGG + ++ +LVD I L ++G PS + ++
Sbjct: 139 LMQILHDKYGVKKLMIEGGPTLNWHMLHDKLVDEIRLIHLPFIVGGSDTPSLVGGMHINT 198
Query: 336 ----KNFMCVRRDYFGSDVCLEY 354
+ GS++ E+
Sbjct: 199 EDEMIRLNLKKYYMCGSNLVSEF 221
>gi|121712499|ref|XP_001273861.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
clavatus NRRL 1]
gi|119402013|gb|EAW12435.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus
clavatus NRRL 1]
Length = 279
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IP 326
D +L L G+ S++VEGG + +S ++ L+DS+I+ + +G+GG +
Sbjct: 182 HRMDWSVVLECLKTEGLGSVMVEGGGTIINSLLDPSSQHLIDSVIVTIAPTWLGQGGVVV 241
Query: 327 SPL------EEGYLEKNFMCVRRDYFGSDVCL 352
SP E V+ FG DV +
Sbjct: 242 SPKRRFDARGEAIPASRLTEVKWYPFGEDVVM 273
>gi|310792769|gb|EFQ28230.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 473
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 35/116 (30%), Gaps = 39/116 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+DA FMS A + + V ++V ++ VI G G P
Sbjct: 312 SWDAYFMSLA-ELA--SLRSNCMKRRVGAVLVGREKRVISTGY---NGTPRGLRNCSDGG 365
Query: 54 --------------------HAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPP 87
HAE AL EAG E GA Y PC
Sbjct: 366 CARCNSGNSSGVGLSTCLCIHAEENALLEAGRERIRDGAVLYCDTCPCLTCSIKIC 421
>gi|312080683|ref|XP_003142705.1| dCMP deaminase [Loa loa]
gi|307762130|gb|EFO21364.1| dCMP deaminase [Loa loa]
Length = 206
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S++ FM A + V +IV D ++G G G P
Sbjct: 45 SWEEYFMGVAHMAALRSK---DPVTQVGAVIVNQDKRIVGSGY---NGMPTGCSDDILPW 98
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + +G+T Y L PC+
Sbjct: 99 SKGSENFLENKSAYVCHAEMNAILNKIVGSIKGSTIYTVLFPCNEC 144
>gi|187780095|ref|ZP_02996568.1| hypothetical protein CLOSPO_03691 [Clostridium sporogenes ATCC
15579]
gi|187773720|gb|EDU37522.1| hypothetical protein CLOSPO_03691 [Clostridium sporogenes ATCC
15579]
Length = 157
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG VI G H EV A+ +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGKVIAVAHNTVIGDNDPTAHGEVNAIRQACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|86740051|ref|YP_480451.1| hypothetical protein Francci3_1345 [Frankia sp. CcI3]
gi|86566913|gb|ABD10722.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3]
Length = 273
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
RG+T +L EGG + + L+D + L + ++ G G ++
Sbjct: 199 AERGMTRILTEGGPLLHSQLAAAGLLDELCLTIAPVLAG-PGRLGIMKGEPWPAPAALTL 257
Query: 343 RDYFGSD--VCLEYIG 356
D + L Y
Sbjct: 258 TQILAEDDVLFLRYRR 273
>gi|20091176|ref|NP_617251.1| cytosine deaminase [Methanosarcina acetivorans C2A]
gi|19916284|gb|AAM05731.1| cytosine deaminase [Methanosarcina acetivorans C2A]
Length = 189
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVT----AYGGCPHAEVQAL 60
D FM A+ ++ + +I+ + ++G+G H E A+
Sbjct: 41 DRNFMRIAVLLAQKSYDEGG--CPIGGVIIDNNTRRIVGKGHNTLVQDNDPYNHGETSAI 98
Query: 61 EEAG-EEARGATAYVTLEPCSHY 82
+AG ++ T + TL PC
Sbjct: 99 RDAGRQDFSNTTIFTTLSPCDVC 121
>gi|228923079|ref|ZP_04086371.1| ComE operon protein 2 [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228836577|gb|EEM81926.1| ComE operon protein 2 [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 185
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 101
>gi|212536738|ref|XP_002148525.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
marneffei ATCC 18224]
gi|210070924|gb|EEA25014.1| riboflavin biosynthesis protein Rib7, putative [Penicillium
marneffei ATCC 18224]
Length = 351
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR----LVDSIILYRSQIVIGEGG 324
+ L + + S+++EGG ++ +S ++ + L+DS+I+ + +G+GG
Sbjct: 250 HQHFDWNVILNVLATKENIKSIMIEGGGSIINSLLSEQRYSALIDSVIVTIAPTWLGQGG 309
Query: 325 -------IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
V+ FG DV L
Sbjct: 310 VVVSPQRRVDSYGCAIPASRLTDVKWHPFGEDVVL 344
>gi|195015670|ref|XP_001984248.1| GH15113 [Drosophila grimshawi]
gi|193897730|gb|EDV96596.1| GH15113 [Drosophila grimshawi]
Length = 194
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 35/106 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM+ A+ S+ + V IV K ++ G G P
Sbjct: 33 WDDYFMATAILSSKRSK---DPSTQVGACIVDKHKRIVAIGY---NGFPRNCSDDVFPWS 86
Query: 54 ----------------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 87 KDSDSDSIENKNMYVVHAEANAILNGNGASLDGTRLYTTLFPCNEC 132
>gi|325845138|ref|ZP_08168447.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sp. HGF1]
gi|325488803|gb|EGC91203.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Turicibacter sp. HGF1]
Length = 157
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVT-------------AYG 50
S+D FM AL S V IV + ++G G
Sbjct: 7 SWDEYFMGIALLSSMRSK---DPQTQVGACIVNEEHRIVGIGYNGFPHGCKDEEFPWERE 63
Query: 51 GC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE A+ + + YV+L PC
Sbjct: 64 GEFINTKYPYVVHAEQNAILNSTTSLKHCRLYVSLFPCHEC 104
>gi|228910163|ref|ZP_04073982.1| ComE operon protein 2 [Bacillus thuringiensis IBL 200]
gi|228849446|gb|EEM94281.1| ComE operon protein 2 [Bacillus thuringiensis IBL 200]
Length = 188
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|195443952|ref|XP_002069651.1| GK11635 [Drosophila willistoni]
gi|194165736|gb|EDW80637.1| GK11635 [Drosophila willistoni]
Length = 160
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 19/124 (15%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL +R G V C+ V VI RG HAE +
Sbjct: 4 FMEDALVEARRARDAGEV----PVGCVFVYGDKVIARGGNEVNVYRNATRHAEFICI--- 56
Query: 64 GEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT Y + + + + V+ G +
Sbjct: 57 -----DATLAYCREKHLPARQLFAEISVVVTVEPCIMCSAALHTLGVKEIIYGCENDRFG 111
Query: 123 GIIV 126
G V
Sbjct: 112 GKTV 115
>gi|22537844|ref|NP_688695.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 2603V/R]
gi|25011789|ref|NP_736184.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae NEM316]
gi|76788185|ref|YP_330315.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae A909]
gi|77406599|ref|ZP_00783646.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae H36B]
gi|77409272|ref|ZP_00785978.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae COH1]
gi|77412446|ref|ZP_00788751.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae CJB111]
gi|77413936|ref|ZP_00790111.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 515]
gi|22534739|gb|AAN00568.1|AE014269_12 cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 2603V/R]
gi|24413330|emb|CAD47409.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563242|gb|ABA45826.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae A909]
gi|77160021|gb|EAO71157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae 515]
gi|77161510|gb|EAO72516.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae CJB111]
gi|77172104|gb|EAO75267.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae COH1]
gi|77174792|gb|EAO77614.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
agalactiae H36B]
gi|319745690|gb|EFV97989.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC
13813]
Length = 150
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----------- 49
M S++ FM+ A S+ + V ++VK+ +I G
Sbjct: 1 MNRLSWEDYFMANAELISKRSTCDRAF---VGAVLVKNNRIIATGYNGGVSETDNCNEVG 57
Query: 50 ----GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ AL + G YVT PC +
Sbjct: 58 HYMEDGHCIRTVHAEMNALIQCAKEGISTNNTEIYVTHFPCINC 101
>gi|146298293|ref|YP_001192884.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
gi|146152711|gb|ABQ03565.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101]
Length = 143
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 38/149 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ +D ++ A +S V +IVKD ++I G G P
Sbjct: 5 KLNKYDKAYLRIAKEWSLLSYCKRK---QVGAIIVKDRMIISDGY---NGTPSGFENCCE 58
Query: 54 -----------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE A+ + + GAT Y+TL PC C++ I + GI+R
Sbjct: 59 DEDGLTRWDVLHAEANAILKVARSTQSCEGATLYITLSPC------KECSKLIHQSGIKR 112
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
VV D G+Q+L + G+ V+
Sbjct: 113 VV----YKDGYRDDSGIQFLIKAGVEVEH 137
>gi|158522092|ref|YP_001529962.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
gi|158510918|gb|ABW67885.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
Length = 155
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+ FM +R T V +IVK+ ++ G
Sbjct: 13 DWHTYFMEITELVARRS---TCLRRHVGAVIVKNKRMLATGYNGAPAGVTHCSETGCLRA 69
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GA+ Y T +PCS +
Sbjct: 70 RLNVPSGERHELCRGIHAEQNAIIQAAFHGVSIQGASLYCTNQPCSICAKM 120
>gi|261188372|ref|XP_002620601.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
gi|239593201|gb|EEQ75782.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081]
gi|239609343|gb|EEQ86330.1| cytosine deaminase [Ajellomyces dermatitidis ER-3]
gi|327354444|gb|EGE83301.1| cytosine deaminase [Ajellomyces dermatitidis ATCC 18188]
Length = 143
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEV 57
+S+ D F++ AL ++ + + +V +DG ++GRG H E+
Sbjct: 1 MSAQDPGFIA-ALEEAKKSAAVGGI--PIGACLVARDGKILGRGHNMRVQKGSATLHGEI 57
Query: 58 QALEEAGEEAR----GATAYVTLEPCSHYGRSPPCA 89
ALE +G GAT Y T+ PC +
Sbjct: 58 AALENSGRLPASTYVGATMYTTMSPCDMCTGACVLY 93
>gi|162451647|ref|YP_001614014.1| cytidine/deoxycytidylate deaminase [Sorangium cellulosum 'So ce
56']
gi|161162229|emb|CAN93534.1| Cytidine/deoxycytidylate deaminase [Sorangium cellulosum 'So ce
56']
Length = 151
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG----CPHAEVQA 59
S D M AL +R + P L+ DG V+ HAEV A
Sbjct: 2 SRDEALMGRALELARGAQ--RAGEPPFGALVAAPDGAVVAEATDEVNAQRDFTWHAEVGA 59
Query: 60 LEEA----GEEARGATAYVTLEPCSHY 82
+ A G + +G T Y T+EPC
Sbjct: 60 VRRACAAVGPDLQGYTLYTTVEPCPMC 86
>gi|319937282|ref|ZP_08011689.1| deoxycytidylate deaminase [Coprobacillus sp. 29_1]
gi|319807648|gb|EFW04241.1| deoxycytidylate deaminase [Coprobacillus sp. 29_1]
Length = 154
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 33/108 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------- 53
V S+D FM A + N V IV + ++G G G P
Sbjct: 3 KVISWDQYFMGVAKLSAYRSK---DPNTQVGACIVTPEHKIVGVGY---NGLPWGCEDDE 56
Query: 54 -------------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + ++ G YV+L PC
Sbjct: 57 FPWANREGDMYDTKYPYVVHAELNAILNSIQKLVGCRIYVSLFPCHEC 104
>gi|313905030|ref|ZP_07838400.1| dCMP deaminase [Eubacterium cellulosolvens 6]
gi|313470100|gb|EFR65432.1| dCMP deaminase [Eubacterium cellulosolvens 6]
Length = 162
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 33/151 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
S+D FM+ A R + + N V IV D ++ G +
Sbjct: 10 SWDEYFMAVA-RLA--GMRSKDPNSQVGSCIVSPDNKILSIGYNGFPRGCSDEEFPWSRE 66
Query: 53 ------------PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
H+E+ A+ G G+ YV+L PC + I
Sbjct: 67 DEDPLRTKYVYVTHSELNAILNYRGGSLEGSKLYVSLFPC-----NECAKAIIQAGIKTV 121
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
+ + G+ V +
Sbjct: 122 IYAENKYEGTPAVTASQMMFAAAGVEVRKYQ 152
>gi|228941493|ref|ZP_04104043.1| ComE operon protein 2 [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228974423|ref|ZP_04134991.1| ComE operon protein 2 [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228981018|ref|ZP_04141320.1| ComE operon protein 2 [Bacillus thuringiensis Bt407]
gi|228778678|gb|EEM26943.1| ComE operon protein 2 [Bacillus thuringiensis Bt407]
gi|228785259|gb|EEM33270.1| ComE operon protein 2 [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818143|gb|EEM64218.1| ComE operon protein 2 [Bacillus thuringiensis serovar berliner ATCC
10792]
Length = 188
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|296413803|ref|XP_002836598.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630426|emb|CAZ80789.1| unnamed protein product [Tuber melanosporum]
Length = 179
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA--- 63
M +AL+ + + S V C+ V +I G G HAE+ A+++
Sbjct: 1 MQSALQIATSALQ--SNEVPVGCVFVHGSRIIASGRNDTNRSLCGTRHAELVAIDKILAT 58
Query: 64 --GEEARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 59 HPPSIFKETDLYVTVEPCIMC 79
>gi|319651626|ref|ZP_08005753.1| ComEB protein [Bacillus sp. 2_A_57_CT2]
gi|317396693|gb|EFV77404.1| ComEB protein [Bacillus sp. 2_A_57_CT2]
Length = 187
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S++ FM+ + + T T +V IV+D +I G + G
Sbjct: 1 MDRISWNQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGEHCIDEG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNAILQCAKFGVPTTDAEIYVTHFPCLQC 101
>gi|294885496|ref|XP_002771343.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239874872|gb|EER03159.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 76
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58
S D RFM AL ++ T P V C V +G+V+ HAE+
Sbjct: 15 FSVDDKRFMRLALAAAQEA-YDTDEVP-VGCAFVSNGVVLATAGNETNHTRNATRHAELV 72
Query: 59 A 59
A
Sbjct: 73 A 73
>gi|271966223|ref|YP_003340419.1| cytidine/deoxycytidylate deaminase [Streptosporangium roseum DSM
43021]
gi|270509398|gb|ACZ87676.1| cytidine/deoxycytidylate deaminase [Streptosporangium roseum DSM
43021]
Length = 167
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V T A +IVKDG ++ HAE+ A+ EA
Sbjct: 3 FAQRTVDIARRNV--TEGGRPFATVIVKDGEILAESANKVAQTSDPTAHAEILAIREACM 60
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G T YV PC
Sbjct: 61 RLGTEHLTGTTIYVLAHPCPMC 82
>gi|94969369|ref|YP_591417.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
versatilis Ellin345]
gi|94551419|gb|ABF41343.1| bifunctional deaminase-reductase-like protein [Candidatus
Koribacter versatilis Ellin345]
Length = 295
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 20/106 (18%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG------------ 321
+ + +LL EGG + + + L+D + S I G
Sbjct: 187 WSLAAHKLRDDLNIRNLLCEGGPTLYGALARADLIDEKFVTISPIETGQLVPPEQERQPN 246
Query: 322 EGG----IPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNL 359
E G P+ K + + G Y + +
Sbjct: 247 ETGPALLRPTIFGGPGFTKETATWWRWISSRKLGDHEFNRYRRRRV 292
>gi|302866154|ref|YP_003834791.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302569013|gb|ADL45215.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
Length = 358
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ LL EGG + + + LVD + L + ++ G G + + ++
Sbjct: 272 RGLGQLLCEGGPHLFGALTAADLVDELCLTVAPLLAGAGPGRITAGDASVPRHLPLRHVL 331
Query: 345 YFGSDVC-LEYIGK 357
V L Y
Sbjct: 332 AAADGVLMLRYARD 345
>gi|228960596|ref|ZP_04122243.1| ComE operon protein 2 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229048033|ref|ZP_04193608.1| ComE operon protein 2 [Bacillus cereus AH676]
gi|229111800|ref|ZP_04241346.1| ComE operon protein 2 [Bacillus cereus Rock1-15]
gi|229146898|ref|ZP_04275262.1| ComE operon protein 2 [Bacillus cereus BDRD-ST24]
gi|228636497|gb|EEK92963.1| ComE operon protein 2 [Bacillus cereus BDRD-ST24]
gi|228671556|gb|EEL26854.1| ComE operon protein 2 [Bacillus cereus Rock1-15]
gi|228723277|gb|EEL74647.1| ComE operon protein 2 [Bacillus cereus AH676]
gi|228799075|gb|EEM46045.1| ComE operon protein 2 [Bacillus thuringiensis serovar pakistani
str. T13001]
Length = 188
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|254459248|ref|ZP_05072670.1| cytidine/deoxycytidylate deaminase family protein
[Campylobacterales bacterium GD 1]
gi|207084141|gb|EDZ61431.1| cytidine/deoxycytidylate deaminase family protein
[Campylobacterales bacterium GD 1]
Length = 152
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 2 PVSSFDARFMSAALRFSRWH-----VGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP- 53
+ + + A++ + G +I KDG ++G G G P
Sbjct: 79 KETKTHRKHIRRAIKLGAHNPMQALKGHAPDGGFFGAVIYKDGKILGEGWNTVLKEGDPS 138
Query: 54 -HAEVQALEEAGE 65
H E+ A+ +A
Sbjct: 139 RHGEMNAIRQATH 151
>gi|331696725|ref|YP_004332964.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326951414|gb|AEA25111.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 256
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 38/94 (40%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+++ +AP+++ T A R +++ LL L RG+ +
Sbjct: 112 DPGARLFTDTAVAPIVLTTAGAPGERRDALRAAGADVVELPDLAPPTLLAELGRRGLHRV 171
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
L EGG A+ + + VD + L S ++G
Sbjct: 172 LCEGGPALHGALAAADAVDELCLTLSPTLVGGDA 205
>gi|78186601|ref|YP_374644.1| deoxycytidylate deaminase, putative [Chlorobium luteolum DSM 273]
gi|78166503|gb|ABB23601.1| deoxycytidylate deaminase, putative [Chlorobium luteolum DSM 273]
Length = 187
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------- 46
+ FMS A SR + +IV+D ++ G
Sbjct: 35 WHEYFMSVAHLISRRATCTRGH---IGAVIVRDHSILSTGYNGAPSGLPHCNETNCRIYR 91
Query: 47 -TAYGGCP--------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
T G HAE+ A+ +A G + Y+T PC H
Sbjct: 92 STHPDGTVEENCVNTIHAEINAIAQAAKHGVSISDSDIYITASPCIHC 139
>gi|229117824|ref|ZP_04247188.1| ComE operon protein 2 [Bacillus cereus Rock1-3]
gi|228665621|gb|EEL21099.1| ComE operon protein 2 [Bacillus cereus Rock1-3]
Length = 188
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|317485386|ref|ZP_07944265.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
gi|316923345|gb|EFV44552.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
Length = 189
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A+ +R G V LIV G ++ HAE+ A+ A
Sbjct: 47 MLQAIAKARQAPQQGEV----PVGALIVDPAGTILAAEHNQPITLSDPSAHAEIMAMRSA 102
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G G VTLEPC
Sbjct: 103 GAVLGNYRLEGCILVVTLEPCLMC 126
>gi|268574948|ref|XP_002642453.1| Hypothetical protein CBG06863 [Caenorhabditis briggsae]
gi|187033808|emb|CAP27096.1| hypothetical protein CBG_06863 [Caenorhabditis briggsae AF16]
Length = 200
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 32/107 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
RF+ A S N V C+IV K+ ++ G G P
Sbjct: 52 EKHQRFLRMAKVTSLRSK---DPNTQVGCVIVDKENCIVSVGY---NGFPIGVDDDVFRW 105
Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A + + T YVTL PC+ +
Sbjct: 106 DKEDPEDNKHLYVVHAEMNAIINKRCATLHDCTVYVTLFPCNKCAQM 152
>gi|190347436|gb|EDK39700.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 150
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
M D + ++ A+ ++ P LI +DG V+GRG H E
Sbjct: 1 MAF--DDEKGLAIAIEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNLRFQKDSATLHGE 57
Query: 57 VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ LE AG + T Y TL PCS + + +R
Sbjct: 58 ISTLENAGRLKGSVYKNCTMYTTLSPCSMCSGACIMYGVKRVVVGENETFMGAEDWIRK 116
>gi|229129607|ref|ZP_04258575.1| ComE operon protein 2 [Bacillus cereus BDRD-Cer4]
gi|229152530|ref|ZP_04280720.1| ComE operon protein 2 [Bacillus cereus m1550]
gi|228630896|gb|EEK87535.1| ComE operon protein 2 [Bacillus cereus m1550]
gi|228653724|gb|EEL09594.1| ComE operon protein 2 [Bacillus cereus BDRD-Cer4]
Length = 188
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|228902852|ref|ZP_04066995.1| ComE operon protein 2 [Bacillus thuringiensis IBL 4222]
gi|228954613|ref|ZP_04116637.1| ComE operon protein 2 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229071833|ref|ZP_04205046.1| ComE operon protein 2 [Bacillus cereus F65185]
gi|229081590|ref|ZP_04214086.1| ComE operon protein 2 [Bacillus cereus Rock4-2]
gi|229180604|ref|ZP_04307945.1| ComE operon protein 2 [Bacillus cereus 172560W]
gi|229192539|ref|ZP_04319500.1| ComE operon protein 2 [Bacillus cereus ATCC 10876]
gi|228590846|gb|EEK48704.1| ComE operon protein 2 [Bacillus cereus ATCC 10876]
gi|228602847|gb|EEK60327.1| ComE operon protein 2 [Bacillus cereus 172560W]
gi|228701696|gb|EEL54186.1| ComE operon protein 2 [Bacillus cereus Rock4-2]
gi|228711263|gb|EEL63225.1| ComE operon protein 2 [Bacillus cereus F65185]
gi|228805059|gb|EEM51654.1| ComE operon protein 2 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228856776|gb|EEN01293.1| ComE operon protein 2 [Bacillus thuringiensis IBL 4222]
Length = 188
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|251798037|ref|YP_003012768.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
gi|247545663|gb|ACT02682.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
Length = 155
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQAL 60
+ D FM A++ S+ V N ++VK+G ++ + +A HAE L
Sbjct: 2 NQDEIFMREAIKLSKLAVE--HGNEPFGAVLVKNGEIVYSNENQIYSATDPTFHAEAGLL 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHYG 83
+ R T Y + EPC
Sbjct: 60 RRFCAETHITDLREYTLYSSCEPCFMCS 87
>gi|218905463|ref|YP_002453297.1| ComE operon protein 2 [Bacillus cereus AH820]
gi|218539989|gb|ACK92387.1| ComE operon protein 2 [Bacillus cereus AH820]
Length = 185
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 101
>gi|149239544|ref|XP_001525648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451141|gb|EDK45397.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces
elongisporus NRRL YB-4239]
Length = 245
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 18/212 (8%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+TL A S D+ I ++ +K H LR++ DAILVG+ TV ADDP+
Sbjct: 23 HNGPFVTLTYAQSLDSRIAAKVGVQTKLSHLETKTMTHYLRSKHDAILVGVNTVQADDPK 82
Query: 207 LTCRLNGLQEHSPMRIILDPHFKL---SLDSKIIKTALLAPVIIVTE-----------ND 252
L CR P+ + + L LAP+IIV E +
Sbjct: 83 LNCRYGNELRIRPVVLDPYRKWNFANSQLCKICKDGKGLAPIIIVDELVQLGESKNDEDA 142
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSI 311
+ AL + +I + + + L G+ +++VEGGA + + + N LVDS+
Sbjct: 143 TELNALGGEYIALPLIEKRMSNWQLIFDKLYKNGLKTIMVEGGATIINELLLNRDLVDSL 202
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
I+ + + +G+ G+ E +
Sbjct: 203 IITVAPVFLGKEGVEV---SPSKEVRLQNISW 231
>gi|326789215|ref|YP_004307036.1| bifunctional deaminase-reductase domain protein [Clostridium
lentocellum DSM 5427]
gi|326539979|gb|ADZ81838.1| bifunctional deaminase-reductase domain protein [Clostridium
lentocellum DSM 5427]
Length = 174
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+D L+ L + + V GG + F+ + L+D I+ + +++GEG S
Sbjct: 89 FTSQDPTNLIKALKEKEGKDIWVIGGTEIVDLFVKADLIDEYIITIAPVILGEG--ISLF 146
Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ E + F Y+ K
Sbjct: 147 KGDKSEIRLVLKEMRAFNGFTQNHYVRK 174
>gi|218460046|ref|ZP_03500137.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli Kim 5]
Length = 187
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ S+ + ++V+DG VI R T + HAE+ +
Sbjct: 2 ENHEPFLREAIALSKSAMANGDE--PFGSVLVRDGDVILRAENSVFTGHDMTNHAEMNLV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 60 KLAAKHYDPAFLADCTLYTSTEPCAMCS 87
>gi|116202471|ref|XP_001227047.1| hypothetical protein CHGG_09120 [Chaetomium globosum CBS 148.51]
gi|88177638|gb|EAQ85106.1| hypothetical protein CHGG_09120 [Chaetomium globosum CBS 148.51]
Length = 167
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 45/142 (31%), Gaps = 20/142 (14%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-AYGGCPHAEVQALEE 62
+M AL ++ TN V ++V ++ G T G HAE +
Sbjct: 8 DHKAYMRLALEQAQKSPPK-PTNYRVGAVLVDSATNEILVTGYTLELSGNTHAEQTCFVK 66
Query: 63 AGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVV--CVDD 106
E+ Y T+EPCS G P + + G R V ++
Sbjct: 67 LAEKHGVSEEDLKSVLPGDLALYTTVEPCSKRLSGNLPCVERVLRLAGSIRTVYVGIMEP 126
Query: 107 PDVRVSGRGLQWLSQKGIIVDR 128
G + L GI V
Sbjct: 127 ETFVAENTGKKSLEDAGIAVVH 148
>gi|84385224|ref|ZP_00988256.1| putative deoxycytidylate deaminase [Vibrio splendidus 12B01]
gi|86145748|ref|ZP_01064077.1| putative deoxycytidylate deaminase [Vibrio sp. MED222]
gi|218676904|ref|YP_002395723.1| putative deoxycytidylate deaminase [Vibrio splendidus LGP32]
gi|84379821|gb|EAP96672.1| putative deoxycytidylate deaminase [Vibrio splendidus 12B01]
gi|85836447|gb|EAQ54576.1| putative deoxycytidylate deaminase [Vibrio sp. MED222]
gi|218325172|emb|CAV27073.1| putative deoxycytidylate deaminase [Vibrio splendidus LGP32]
Length = 147
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + +VT PC + I
Sbjct: 57 DREMKYLKTLHAEENAILFAKRDLDSCEVWVTHFPCPNCAAKI-IQTGISAVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 116 FLSRWGDKIKISQDMFEQAGVEVDW 140
>gi|153816406|ref|ZP_01969074.1| hypothetical protein RUMTOR_02659 [Ruminococcus torques ATCC 27756]
gi|317502465|ref|ZP_07960628.1| dCMP deaminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089291|ref|ZP_08338193.1| hypothetical protein HMPREF1025_01776 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846241|gb|EDK23159.1| hypothetical protein RUMTOR_02659 [Ruminococcus torques ATCC 27756]
gi|316896150|gb|EFV18258.1| dCMP deaminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405843|gb|EGG85372.1| hypothetical protein HMPREF1025_01776 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 187
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
++D FM A+ N V C IV +D ++ G
Sbjct: 35 TWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGFPLGCSDDEFPWVRD 91
Query: 51 GC----------PHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G H+E+ A+ +G GA YV+L PC+
Sbjct: 92 GEDPLETKYVYSTHSELNAILNYSGGSLAGAKLYVSLFPCNEC 134
>gi|54022333|ref|YP_116575.1| hypothetical protein nfa3690 [Nocardia farcinica IFM 10152]
gi|54013841|dbj|BAD55211.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 183
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA +A S I LVD ++ S +V+G G P+ + L +F + V L
Sbjct: 122 GGATLAASLIPHGLVDEYQMFVSPVVLGGGTPYFPVLDTRL--RLRLAETRHFKTAVLLR 179
Query: 354 YI 355
Y+
Sbjct: 180 YV 181
>gi|229098798|ref|ZP_04229736.1| ComE operon protein 2 [Bacillus cereus Rock3-29]
gi|228684642|gb|EEL38582.1| ComE operon protein 2 [Bacillus cereus Rock3-29]
Length = 188
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|146416895|ref|XP_001484417.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 150
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAE 56
M D + ++ A+ ++ P LI +DG V+GRG H E
Sbjct: 1 MAF--DDEKGLAIAIEEAKKG-YEEGGVPIGGALISEDGTVLGRGHNLRFQKDSATLHGE 57
Query: 57 VQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
+ LE AG + T Y TL PCS + + +R
Sbjct: 58 ISTLENAGRLKGSVYKNCTMYTTLSPCSMCSGACIMYGVKRVVVGENETFMGAEDWIRK 116
>gi|169607064|ref|XP_001796952.1| hypothetical protein SNOG_06585 [Phaeosphaeria nodorum SN15]
gi|111065296|gb|EAT86416.1| hypothetical protein SNOG_06585 [Phaeosphaeria nodorum SN15]
Length = 189
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG-GCPHAEVQ 58
P + ++M AL ++ S N V L+V G ++ RG T G HAE
Sbjct: 22 PDPNNHLQYMLLALDQAQESPPKPS-NFRVGALLVDADTGAILSRGYTLECEGNTHAEQC 80
Query: 59 ALEE-----------AGEEA-RGATAYVTLEPCS 80
L + GE Y T+EPC+
Sbjct: 81 CLLKYAQAHDLPEERVGEALPPNTVIYTTMEPCN 114
>gi|89100804|ref|ZP_01173656.1| ComEB [Bacillus sp. NRRL B-14911]
gi|89084450|gb|EAR63599.1| ComEB [Bacillus sp. NRRL B-14911]
Length = 195
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 34/183 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
S+D FM+ + + T T +V IV+D +I G + G
Sbjct: 6 SWDQYFMAQSHLLALRS---TCTRLAVGATIVRDKRIIAGGYNGSIAGGDHCIDHGCYVI 62
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ ++ + G GA YVT PC +
Sbjct: 63 DNHCVRTIHAEMNSILQCAKFGVPTAGADIYVTHFPCLQC---------CKAIIQAGIAT 113
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162
+ ++ Q G+ V+++M E + + + K +K +
Sbjct: 114 VYYAEAYKNHPYAIELFEQAGVRVEQVMHKEISLEFNRAEKAEYIKNLLEEMKQNGTDHE 173
Query: 163 MIG 165
I
Sbjct: 174 RID 176
>gi|313212148|emb|CBY16157.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FMS AL S+ V I+ K ++G G G P
Sbjct: 10 SWDEYFMSIALLSSQRSK---DPATQVGACIINKKQRIVGIGY---NGLPHGCSDKELPW 63
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + G T + TL PC+
Sbjct: 64 GKTGDWMETKYPYVCHAEMNAILNKNQADIDGGTIFTTLYPCNEC 108
>gi|229076001|ref|ZP_04208974.1| ComE operon protein 2 [Bacillus cereus Rock4-18]
gi|229104958|ref|ZP_04235614.1| ComE operon protein 2 [Bacillus cereus Rock3-28]
gi|228678452|gb|EEL32673.1| ComE operon protein 2 [Bacillus cereus Rock3-28]
gi|228707113|gb|EEL59313.1| ComE operon protein 2 [Bacillus cereus Rock4-18]
Length = 188
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGAKTEEAEIYVTHFPCLQC 104
>gi|144575095|gb|AAZ43808.2| deoxycytidylate deaminase fusion protein [Mycoplasma synoviae 53]
Length = 168
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP--------- 53
S+D FM A + + V IV + +IG G G
Sbjct: 12 SWDDYFMGLAKLSALRSK---DPSTQVGACIVNRQNHIIGMGYNGMPNGEDELFPWESNS 68
Query: 54 ------------HAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
HAEV A+ + AT Y +L PCS+
Sbjct: 69 SDEKDNKYPYVMHAEVNAILNTSVMLQNSNATIYTSLFPCSNC 111
>gi|255067649|ref|ZP_05319504.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
gi|255048123|gb|EET43587.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256]
Length = 243
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61
FM AAL + G V ++V + +I + HAE++AL
Sbjct: 96 ETFMRAALTQAEQSASIGEI----PVGAVVVSNNQIIAAAHNTCVSDHDISRHAEIRALA 151
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
A G Y+TLEPC+
Sbjct: 152 AAGAALQNYRLDGCDLYITLEPCAMC 177
>gi|219684000|ref|YP_002470383.1| cytidine and deoxycytidylate deaminase [Bifidobacterium animalis
subsp. lactis AD011]
gi|219621650|gb|ACL29807.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
animalis subsp. lactis AD011]
Length = 152
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R ++ + V +++ G VIGRG HAE+ A+ EA
Sbjct: 8 MGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMREAAA 65
Query: 66 -----EARGATAYVTLEPCSHYGRSP 86
T VTLEPC +
Sbjct: 66 VRGNWNLADCTLVVTLEPCPMCAGAC 91
>gi|229817012|ref|ZP_04447294.1| hypothetical protein BIFANG_02267 [Bifidobacterium angulatum DSM
20098]
gi|229785757|gb|EEP21871.1| hypothetical protein BIFANG_02267 [Bifidobacterium angulatum DSM
20098]
Length = 147
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALE 61
D + M AL + + V L++ G + G G G P HAEV A+
Sbjct: 3 DDKAMRCALELAHRAAE--HGDVPVGALVLDAHGHIAGEGWNTREVDGDPLAHAEVAAMR 60
Query: 62 EA---GEEARGATAYVTLEPCSHYGRSP 86
EA G T VTLEPC +
Sbjct: 61 EAAEHGWNLADCTLVVTLEPCPMCAGAC 88
>gi|167753214|ref|ZP_02425341.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
gi|167659145|gb|EDS03275.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216]
Length = 144
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ + V LIVKD ++I G G P
Sbjct: 11 LDMRYLRMARIWAENSYCVRRK---VGALIVKDKMIISDGY---NGTPAGFENICEDETG 64
Query: 54 -------HAEVQALEEAGEEARGA---TAYVTLEPCSHYG 83
HAE A+ + + A T Y+T PC
Sbjct: 65 KTKSYVLHAEANAITKVAKSANNCDGSTLYITAAPCIECS 104
>gi|123494611|ref|XP_001326555.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121909471|gb|EAY14332.1| hypothetical protein TVAG_026530 [Trichomonas vaginalis G3]
Length = 151
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPL 329
+ + + + VEGG + S + +++VD + + S G I P+P
Sbjct: 62 WKSVMSKLKKDFHINVISVEGGGMINWSVLKAKIVDEVSILMSAAADGTRSISLFEPNPY 121
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
E F + S+ + ++YI K
Sbjct: 122 ETNTDPMEFTLKSVEKINSNEIWIKYIPK 150
>gi|50365203|ref|YP_053628.1| deoxycytidylate deaminase [Mesoplasma florum L1]
gi|50363759|gb|AAT75744.1| deoxycytidylate deaminase [Mesoplasma florum L1]
Length = 157
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 26/104 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA------------ 48
+++ FM+ A + + V ++V + +I G
Sbjct: 5 NFLNWEQFFMTVAKVCAMRSK---DPSTQVGAILVNNLNQIISTGYNGFPRGVNDDEFPW 61
Query: 49 -YGGC---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
G HAE+ A+ A + YVTL PC+
Sbjct: 62 TREGEWIDTKYPYVAHAELNAIVSARTNLTDSDVYVTLFPCNEC 105
>gi|212540050|ref|XP_002150180.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
gi|210067479|gb|EEA21571.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224]
Length = 148
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAEVQALEEAGEEA- 67
A+ +R + +V KDG ++GRG G H E+ ALE +G
Sbjct: 10 AVEEARQGQAEGGV--PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|158312920|ref|YP_001505428.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
gi|158108325|gb|ABW10522.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
Length = 188
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
M A R + V P +IVKDG ++ RG HAEV+++ +
Sbjct: 3 HEELMGEATRLATQSVENGWGGP-FGAVIVKDGEIVARGQNRVLLTGDPTAHAEVESIRK 61
Query: 63 A 63
A
Sbjct: 62 A 62
>gi|170584686|ref|XP_001897125.1| dCMP deaminase [Brugia malayi]
gi|158595455|gb|EDP34008.1| dCMP deaminase, putative [Brugia malayi]
Length = 205
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S++ FM A + V +IV D ++G G G P
Sbjct: 44 SWEEYFMGVAHMAALRSK---DPITQVGAVIVNQDKRIVGSGY---NGMPTGCSDDVLPW 97
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + +G+T Y L PC+
Sbjct: 98 GKDPENFLENKSAYVCHAELNAILNKIVGSIKGSTIYTVLFPCNEC 143
>gi|50426769|ref|XP_461982.1| DEHA2G10010p [Debaryomyces hansenii CBS767]
gi|54036250|sp|Q6BII9|RIB7_DEBHA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|49657652|emb|CAG90452.1| DEHA2G10010p [Debaryomyces hansenii]
Length = 247
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194
+ FL YL R R +TL A S D+ I I+ +K H +R++ D I+
Sbjct: 11 RPFLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIM 70
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIIL-------DPHFKLSLDSKIIKTALLAPVII 247
VGIGTVLADDP+L CR + + + K L S LAP I+
Sbjct: 71 VGIGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFIL 130
Query: 248 VTENDDPVLAL---------AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ E P AF + + + +L L G+ S++VEGGA++
Sbjct: 131 IDETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGGASI 190
Query: 299 AHSFI-NSRLVDSIILYRSQIVIGEGGI 325
+ + S+++DS+I+ + +G+ G+
Sbjct: 191 INDLLVYSKIIDSLIITIGPVFLGKDGV 218
>gi|169335784|ref|ZP_02862977.1| hypothetical protein ANASTE_02209 [Anaerofustis stercorihominis DSM
17244]
gi|169258522|gb|EDS72488.1| hypothetical protein ANASTE_02209 [Anaerofustis stercorihominis DSM
17244]
Length = 154
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 32/114 (28%), Gaps = 33/114 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------- 46
S+D FM L + T V +IVKD +I G
Sbjct: 6 SRPSWDEYFMEM-LEVVKTR--STCIRRHVGAIIVKDHKIISTGYNGAPKGLAHCTKDTC 62
Query: 47 ------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ A G GA Y+T PC +
Sbjct: 63 VRLKYNIKSGERHELCRATHAEQNAIISAATMGVSVEGADIYITDSPCILCSKM 116
>gi|307108051|gb|EFN56292.1| hypothetical protein CHLNCDRAFT_144679 [Chlorella variabilis]
Length = 250
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
+ D RFM AAL+ + +G V C++V+DG V+ G G HAE
Sbjct: 6 EWTPDDLRFMRAALQQAANALGENEV--PVGCVVVRDGAVVAAGSNKTNETRNGTRHAEF 63
Query: 58 QALEEA---------GEEARGATAYVTLEPCSHY 82
A++ YVT EPC
Sbjct: 64 VAVDALLQQAGGDAAAARFPECHLYVTCEPCIMC 97
>gi|241763322|ref|ZP_04761378.1| bifunctional deaminase-reductase domain protein [Acidovorax
delafieldii 2AN]
gi|241367474|gb|EER61773.1| bifunctional deaminase-reductase domain protein [Acidovorax
delafieldii 2AN]
Length = 245
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NF 338
G+ +L+EGG V +F+ + L+D + L + G GI + E +
Sbjct: 156 GMRRVLLEGGGVVNGAFLKAGLIDEVSLMLYPGIDGLSGIHTVFECQGPAELLPSAGATL 215
Query: 339 MCVRRDYFGSDV-CLEYI 355
+ D+ L Y+
Sbjct: 216 ELTHLERLPDDIVWLRYL 233
>gi|329851126|ref|ZP_08265883.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Asticcacaulis biprosthecum C19]
gi|328839972|gb|EGF89544.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Asticcacaulis biprosthecum C19]
Length = 154
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPH 54
+ S D M AAL + G + LI V+ + C H
Sbjct: 1 MQSEDETLMLAALDLAHEAARSGEV----PIGALIFDPSSKTVVATARNSPILLNDPCAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+ AL AG+ G YVTLEPC+
Sbjct: 57 AEILALRAAGQAIGNYRLGGLWLYVTLEPCAMC 89
>gi|229019551|ref|ZP_04176367.1| ComE operon protein 2 [Bacillus cereus AH1273]
gi|229025792|ref|ZP_04182191.1| ComE operon protein 2 [Bacillus cereus AH1272]
gi|228735500|gb|EEL86096.1| ComE operon protein 2 [Bacillus cereus AH1272]
gi|228741717|gb|EEL91901.1| ComE operon protein 2 [Bacillus cereus AH1273]
Length = 185
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + + YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEESEIYVTHFPCLQC 101
>gi|119962522|ref|YP_949093.1| cytidine/deoxycytidylate deaminase [Arthrobacter aurescens TC1]
gi|119949381|gb|ABM08292.1| putative cytidine/deoxycytidylate deaminase [Arthrobacter
aurescens TC1]
Length = 164
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHA 55
M + +F++ ++ + +V + +IV DG GV HA
Sbjct: 1 MSTTVTAEQFLATSIELATANVLNSGG--PFGAVIVTADGRAF-EGVNRVTATNDPTAHA 57
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+ A + GAT Y + EPC
Sbjct: 58 EVTAIRNACRELGTFDLSGATLYTSCEPCPMC 89
>gi|317025956|ref|XP_001388634.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus
niger CBS 513.88]
Length = 337
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGG--- 324
D LL LV G+ S+++EGG ++ +S + LVDS+I+ + +G+GG
Sbjct: 239 HRIDWTALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVV 298
Query: 325 --IPSPLEEGYLE-KNFMCVRRDYFGSDVCL 352
+ V+ FG DV L
Sbjct: 299 SPRRRVEGGMVVPASRLTGVKWYPFGEDVVL 329
>gi|295394785|ref|ZP_06805000.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972381|gb|EFG48241.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri
ATCC 49030]
Length = 258
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 4/156 (2%)
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
L R Q P+ +I+ L D I +PV + T DP LA +++
Sbjct: 106 HLNQRHARGQTDVPIMVIVTSSGDLPWD--RINERGTSPVWVATNTSDPQ-VLAELRRHA 162
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + + + LV RG+ L+ EGG V ++++ L+D + L S + G G
Sbjct: 163 DEVLTGIESPQAVKDALVARGLRRLVCEGGPNVLAQWMDAGLIDEMCLTVSPKLHGTPGA 222
Query: 326 PSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
P EG ++ + G + ++
Sbjct: 223 PRLFGEGIATARDVEVLSLVTDGQSMMYRLKVRSAL 258
>gi|134054726|emb|CAK43566.1| unnamed protein product [Aspergillus niger]
Length = 275
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGG--- 324
D LL LV G+ S+++EGG ++ +S + LVDS+I+ + +G+GG
Sbjct: 177 HRIDWTALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVV 236
Query: 325 --IPSPLEEGYLE-KNFMCVRRDYFGSDVCL 352
+ V+ FG DV L
Sbjct: 237 SPRRRVEGGMVVPASRLTGVKWYPFGEDVVL 267
>gi|300088321|ref|YP_003758843.1| CMP/dCMP deaminase zinc-binding protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528054|gb|ADJ26522.1| CMP/dCMP deaminase zinc-binding protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 157
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
M D F+ A + V + VK+ ++ G G P
Sbjct: 1 MNRPHTDDYFLKIAAVVAERSTCRRR---HVGAVAVKNKHILTTGYNGAPAGVPDCLELG 57
Query: 54 --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G G+T Y T PC +
Sbjct: 58 CLRDENNIPSGTRHEICRAVHAEQNVIIQAAQHGVNLEGSTVYCTHTPCILCAKM 112
>gi|145594102|ref|YP_001158399.1| hypothetical protein Strop_1555 [Salinispora tropica CNB-440]
gi|145303439|gb|ABP54021.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 248
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 2/162 (1%)
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
+ D+ + R P +++ L A + P+++
Sbjct: 88 YRALRLDERRRSWRREHGLPECPTLVVVSGSVNLDPTQPAFADAPVRPIVLTHAAATAPP 147
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
LA + L + RG+ LL EGG + + + LVD + L +
Sbjct: 148 GLADVADLVECGDDRVDLAAGLAELR-RRGLGQLLCEGGPHLFGALTAADLVDEVCLTVA 206
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRR-DYFGSDVCLEYIGK 357
++ G G + ++ + L Y
Sbjct: 207 PLLAGPGAGRITAGQPSPVRHLPLRHVLAATDGGLLLRYARD 248
>gi|254820531|ref|ZP_05225532.1| cytidine/deoxycytidylate deaminase [Mycobacterium intracellulare
ATCC 13950]
Length = 166
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IV+ G V+ HAE+ A+ EA
Sbjct: 4 FAQRTIELARRNVAEGGR--PFATVIVRGGEVLAESANRVAQTNDPTAHAEILAIREACV 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E T YV PC
Sbjct: 62 KLGTEHLVDTTIYVLAHPCPMC 83
>gi|329119731|ref|ZP_08248411.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464180|gb|EGF10485.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 151
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAG 64
R M+AAL +R V LIV+DG ++ A HAE+ AL AG
Sbjct: 8 RLMAAALDKARQAAAENEV--PVGALIVRDGQILAAAHNACAAQNSVAAHAEILALTAAG 65
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ AY+TLEPC
Sbjct: 66 QSLGTPRLDSCDAYITLEPCPMC 88
>gi|288924860|ref|ZP_06418797.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
buccae D17]
gi|315607887|ref|ZP_07882880.1| competence protein ComEB [Prevotella buccae ATCC 33574]
gi|288338647|gb|EFC76996.1| cytidine/deoxycytidylate deaminase family protein [Prevotella
buccae D17]
gi|315250356|gb|EFU30352.1| competence protein ComEB [Prevotella buccae ATCC 33574]
Length = 148
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A +S V L+VKD ++I G G P
Sbjct: 10 KLDLRYLRMACIWSENSYCERRK---VGALVVKDKMIISDGY---NGTPSGFENVCEDEN 63
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ + + G+T YVT PC
Sbjct: 64 HITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIEC 103
>gi|332523517|ref|ZP_08399769.1| putative ComE operon protein 2 [Streptococcus porcinus str.
Jelinkova 176]
gi|332314781|gb|EGJ27766.1| putative ComE operon protein 2 [Streptococcus porcinus str.
Jelinkova 176]
Length = 152
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTELYVTHFPCINC 102
>gi|254502430|ref|ZP_05114581.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Labrenzia alexandrii DFL-11]
gi|222438501|gb|EEE45180.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Labrenzia alexandrii DFL-11]
Length = 155
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V++G ++ R HAEV + A + YVTLEPC+
Sbjct: 31 PVGAVLVRNGEIVARDGNRTLELNDPTAHAEVLVIRAACAALQSQRLPKCDLYVTLEPCA 90
Query: 81 HY 82
Sbjct: 91 MC 92
>gi|194743340|ref|XP_001954158.1| GF18139 [Drosophila ananassae]
gi|190627195|gb|EDV42719.1| GF18139 [Drosophila ananassae]
Length = 160
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 30/124 (24%), Gaps = 19/124 (15%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM A +R G V C+ V VI RG HAE +
Sbjct: 4 FMEEAFIEARRARDAGEV----PVGCVFVLGDKVIARGGNEVNVHRNATRHAEFICI--- 56
Query: 64 GEEARGATA-YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AT Y + + + V+ G +
Sbjct: 57 -----DATLAYCREKRLPARQMFSEITVVVTVEPCIMCSAALHTLGVKEIIYGCENDRFG 111
Query: 123 GIIV 126
G V
Sbjct: 112 GKTV 115
>gi|269986813|gb|EEZ93091.1| CMP/dCMP deaminase zinc-binding protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 159
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 41/120 (34%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M S+D F + + AC+IVK+ ++ G G P
Sbjct: 1 MARLSWDEYFTEITKKVAERSTCDRGHA---ACVIVKENRILATGY---AGSPKGMPHCD 54
Query: 54 -------------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+TAYVT+EPC +
Sbjct: 55 DVGHMLRKQYDNETGEITTHCIRTVHAEQNAITQAAKFGVSLDGSTAYVTMEPCFVCAKM 114
>gi|302423090|ref|XP_003009375.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
albo-atrum VaMs.102]
gi|261352521|gb|EEY14949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium
albo-atrum VaMs.102]
Length = 203
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSP 328
+ +L L G+ S+++EGG V +S + LVDS+I+ + +G+GG+ P
Sbjct: 109 WRDILAALHREGLGSVMIEGGGQVINSLLAPTSHHLVDSVIVTIAPTWLGQGGVVVSPER 168
Query: 329 LEEGYLEK---NFMCVRRDYFGSDVCL 352
+E+ V FG DV L
Sbjct: 169 VEQNGTAISAARLSHVSWHPFGEDVVL 195
>gi|212716206|ref|ZP_03324334.1| hypothetical protein BIFCAT_01122 [Bifidobacterium catenulatum
DSM 16992]
gi|212660866|gb|EEB21441.1| hypothetical protein BIFCAT_01122 [Bifidobacterium catenulatum
DSM 16992]
Length = 149
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 1 MPVSSFDARFMSAALRFSRW--HVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
M S M A+ +R G V +++ G VIGRG
Sbjct: 1 MQWSDD----MGLAIELAREAAAEGEV----PVGAVVLDAGGAVIGRGRNLREAHADPLA 52
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSP 86
HAEV+A+ +A T VTLEPC +
Sbjct: 53 HAEVKAMTQAARSLGTWNLADCTLIVTLEPCPMCAGAC 90
>gi|169642534|gb|AAI60619.1| Adat2 protein [Danio rerio]
Length = 238
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 52/207 (25%), Gaps = 31/207 (14%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL--- 60
+M+ A + G V CL+V + +IG+G HAE+ AL
Sbjct: 24 WMAKAFDMAVEAFENGEV----PVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQV 79
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGRSPP------CAQFIIECGIRRVVVCVDD 106
++ E YVT+EPC + +D
Sbjct: 80 LDWCRLREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139
Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166
+ G + G + +E + Q +
Sbjct: 140 SSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNGQCQTGGRKRGFSVC----CCQT 195
Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAI 193
A + + + ++
Sbjct: 196 ACGSVPHLLCAELHPRCTAAVSSANRW 222
>gi|295109528|emb|CBL23481.1| Deoxycytidylate deaminase [Ruminococcus obeum A2-162]
Length = 164
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-------------YG 50
S+D FM A+ N V IV D ++ G
Sbjct: 13 SWDEYFMGVAMLSGMRSK---DPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWARE 69
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G GA YV+L PC+
Sbjct: 70 GEPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNEC 111
>gi|225866307|ref|YP_002751685.1| ComE operon protein 2 [Bacillus cereus 03BB102]
gi|225787758|gb|ACO27975.1| ComE operon protein 2 [Bacillus cereus 03BB102]
Length = 185
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 101
>gi|315304838|ref|ZP_07874988.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
ivanovii FSL F6-596]
gi|313626791|gb|EFR95774.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
ivanovii FSL F6-596]
Length = 174
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ + +D ++ + I++G+G PL E E + FG
Sbjct: 107 IWLVGGAKLVKQFLKEKAIDRFVITVAPIILGKG---IPLFEEDKEHALELEKVSQFGQF 163
Query: 350 VCLEY 354
L Y
Sbjct: 164 AQLTY 168
>gi|256072191|ref|XP_002572420.1| deoxycytidylate deaminase [Schistosoma mansoni]
gi|238657578|emb|CAZ28651.1| deoxycytidylate deaminase, putative [Schistosoma mansoni]
Length = 175
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------------G 51
S+D FMS AL + + V IV + ++G G G
Sbjct: 22 SWDEYFMSIALLSAMRSK---DPSTQVGACIVNQEKKIVGIGYNGMPNGILDDDVPWGKG 78
Query: 52 CP-----------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + G T + T+ PC+
Sbjct: 79 SANELENKYLYVCHAELNAVLNRNEAHSGGCTLFTTMFPCNEC 121
>gi|229829440|ref|ZP_04455509.1| hypothetical protein GCWU000342_01530 [Shuttleworthia satelles DSM
14600]
gi|229791871|gb|EEP27985.1| hypothetical protein GCWU000342_01530 [Shuttleworthia satelles DSM
14600]
Length = 191
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------AYG 50
S+D FM A + + N V IV ++ G
Sbjct: 40 SWDEYFMGVA---ALAGMRSKDPNTQVGACIVSSQNKILSIGYNGLPIGCSDDEFPWNRE 96
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G G YVTL PC+
Sbjct: 97 GNPLENKYFYTTHSELNAILNYRGGSLEGTKMYVTLFPCNEC 138
>gi|227486316|ref|ZP_03916632.1| competence protein ComEB [Anaerococcus lactolyticus ATCC 51172]
gi|227235727|gb|EEI85742.1| competence protein ComEB [Anaerococcus lactolyticus ATCC 51172]
Length = 147
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
++D FM A + T V C++V + ++ G T
Sbjct: 7 TWDEYFMRLAETVAMRG---TCDRAYVGCVLVNSENRIVSTGYNGSIKGNAHCDEIGHTM 63
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G YVT PC +
Sbjct: 64 RDGHCIATIHAEMNALLYCAKEGIAVNNCICYVTHFPCLNC 104
>gi|300718994|ref|YP_003743797.1| Cytidine/deoxycytidylate deaminase [Erwinia billingiae Eb661]
gi|299064830|emb|CAX61950.1| Cytidine/deoxycytidylate deaminase [Erwinia billingiae Eb661]
Length = 157
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
F+ + + +V A +IV++G ++ HAE+ A+ EA +
Sbjct: 3 FVKRTIELAMQNVEEGGR--PFATVIVRNGEIVAESANKAAQSHDPTAHAEILAIREACK 60
Query: 66 EAR-----GATAYVTLEPCSHY 82
+ + Y+ PC
Sbjct: 61 KLQTENLSDCEIYILASPCPMC 82
>gi|257869951|ref|ZP_05649604.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
gi|257804115|gb|EEV32937.1| cytidine/deoxycytidylate deaminase [Enterococcus gallinarum EG2]
Length = 180
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM+ A+ S V +VKD +I G
Sbjct: 19 KRIPWDQYFMAQAVLLSLRSTCSRLE---VGATLVKDRRIIAGGYNGSVSGDVHCIDEGC 75
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPC 79
HAE+ AL + G A YVT PC
Sbjct: 76 YVVDGHCIRTIHAEMNALLQCAKLGVSTDNAEIYVTHFPC 115
>gi|222153659|ref|YP_002562836.1| cytidine and deoxycytidylate deaminase [Streptococcus uberis 0140J]
gi|222114472|emb|CAR43320.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
uberis 0140J]
Length = 151
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ T V ++VKD +I G G
Sbjct: 10 YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSATDNCDEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 102
>gi|221106915|ref|XP_002154094.1| PREDICTED: similar to dCMP deaminase [Hydra magnipapillata]
Length = 203
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 40/190 (21%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP---------- 53
S++ FM+ A ++ V IV + ++G G G P
Sbjct: 24 SWEDYFMAIAFLSAQRSK---DPVTQVGACIVNNENKIVGIGY---NGMPIGCSDEVLPW 77
Query: 54 ----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE+ A L + + + Y TL PC + +
Sbjct: 78 SRIGESFMETKYAYVCHAELNAVLNKNSADVQDCIIYTTLFPC-----NECAKIILQSRI 132
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156
V D + + GI R + + K + + K + +K+
Sbjct: 133 KEIVYYSNKYKDRPETQAAEKMFDLAGIK-HRQHQPKQKQIVIDFDRINTFKPTPTGMKL 191
Query: 157 AVSQDNMIGM 166
+ +
Sbjct: 192 TDNFSKISID 201
>gi|220919666|ref|YP_002494969.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacterium nodulans ORS 2060]
gi|219952086|gb|ACL62477.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacterium nodulans ORS 2060]
Length = 240
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-------KNF 338
GV ++L++GGA++ +F+ RL+D I L + G G+PS +
Sbjct: 155 GVETILLQGGASINGAFLKQRLIDEISLLIQPAIDGLAGVPSIFGYEGSADERPGAGQAL 214
Query: 339 MCVRRDYF-GSDVCLEYIGKN 358
+ + G V L Y ++
Sbjct: 215 RHLHTETLEGGMVWLRYRVED 235
>gi|261880389|ref|ZP_06006816.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
gi|270332934|gb|EFA43720.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361]
Length = 156
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ V L+VK+ ++I G G P
Sbjct: 13 LDGRYLRMARIWAENSYCKRR---QVGALVVKNKMIISDGY---NGTPSGFENVCEDDND 66
Query: 54 -------HAEVQALEEAGE---EARGATAYVTLEPCSHY 82
HAE A+ + + GAT YVT PC
Sbjct: 67 LTKPYVLHAEANAITKLARSHNNSEGATLYVTASPCIEC 105
>gi|258405542|ref|YP_003198284.1| CMP/dCMP deaminase zinc-binding [Desulfohalobium retbaense DSM
5692]
gi|257797769|gb|ACV68706.1| CMP/dCMP deaminase zinc-binding protein [Desulfohalobium retbaense
DSM 5692]
Length = 153
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 33/107 (30%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV---------------------- 46
FM A + T V + VKD ++ G
Sbjct: 10 YFMRIAHLVAERS---TCLRRRVGAIAVKDNRILATGYNGAPAGLAHCLDIGCLREKMGI 66
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G +GA + T +PC +
Sbjct: 67 PSGERHELCRGLHAEQNVIIQAAVHGIPLKGAEIFCTTQPCLICTKM 113
>gi|256375715|ref|YP_003099375.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
gi|255920018|gb|ACU35529.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
Length = 262
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVR 342
RG+ + EGG A+ S I + LVD + L + +++ G G + +
Sbjct: 187 ERGLRRVDCEGGPALFASLIAADLVDVLCLTVAPLLVAGGSGRIGAGVPSAVPRGLELTS 246
Query: 343 RDYFGSDVCLEYIG 356
+ + L Y
Sbjct: 247 ALHDEGYLMLRYAR 260
>gi|257080390|ref|ZP_05574751.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256988420|gb|EEU75722.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
Length = 158
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------GCP 53
M + D RF+ A+ + N ++VKD ++ T
Sbjct: 1 MDLKKQDERFIMQAISLAEASKNQ--GNEPFGAILVKDNTIV---FTNENQIHIKSDPTF 55
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHYG 83
HAE + E ++ T Y + EPC
Sbjct: 56 HAEHGLIREFCQKYKITDLSEYTLYSSCEPCFMCS 90
>gi|297582627|ref|YP_003698407.1| bifunctional deaminase-reductase domain-containing protein
[Bacillus selenitireducens MLS10]
gi|297141084|gb|ADH97841.1| bifunctional deaminase-reductase domain protein [Bacillus
selenitireducens MLS10]
Length = 180
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
L P V + +N ++ + + + + ++ G ++ + G
Sbjct: 57 YDWIRQLALPAFPYEGKSAFVFSRDHHPENDDVHWINEDPVSFVRSLKASDG-GTIWLVG 115
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G + + + L+DS I+ + +++G GIP L + + + +G + L Y
Sbjct: 116 GGELVKTLYEAGLIDSYIITIAPVLLG-NGIPLFLTNSR-HQELELLNSERYGQFIQLYY 173
Query: 355 IGK 357
K
Sbjct: 174 KRK 176
>gi|288906089|ref|YP_003431311.1| competence protein ComEB required for DNA binding and uptake
[Streptococcus gallolyticus UCN34]
gi|306832128|ref|ZP_07465282.1| competence protein ComEB [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325979054|ref|YP_004288770.1| competence protein ComEB [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732815|emb|CBI14391.1| putative competence protein ComEB required for DNA binding and
uptake [Streptococcus gallolyticus UCN34]
gi|304425567|gb|EFM28685.1| competence protein ComEB [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178982|emb|CBZ49026.1| competence protein ComEB [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 154
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSETDNCNEVGHKMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G +G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCINC 102
>gi|281424156|ref|ZP_06255069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
F0302]
gi|281401717|gb|EFB32548.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris
F0302]
Length = 159
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 38/152 (25%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ L V L+VKD ++I G G P
Sbjct: 19 LDNRYLRMARIWAENSYCLRR---QVGALVVKDKMIISDGY---NGTPSGFDNVCEDANQ 72
Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ + + G+T YVT PC CA+ II+ GIRRVV
Sbjct: 73 ATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPCI------ECAKLIIQAGIRRVVYA 126
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
G+ L + GI V M +
Sbjct: 127 EKY----RLEDGIHLLCKAGIEVIYMEQKNNY 154
>gi|269958624|ref|YP_003328411.1| putative cytosine/adenosine deaminase [Anaplasma centrale str.
Israel]
gi|269848453|gb|ACZ49097.1| putative cytosine/adenosine deaminase [Anaplasma centrale str.
Israel]
Length = 154
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 39/125 (31%), Gaps = 20/125 (16%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAG 64
+M A+ + V ++V + G+VI HAE+ A+ EA
Sbjct: 9 YMRLAMLEAVSSPAEV----PVGAIVVDERGVVISSRHNLTLRNSDPTAHAEMLAIREAC 64
Query: 65 -----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
YVTLEPC CA I IRR+ + G +
Sbjct: 65 LHFSTHVLNNCDMYVTLEPC------AMCAYAISLSRIRRLYFGAYNVKCGGVEHGARVF 118
Query: 120 SQKGI 124
Sbjct: 119 RFCNH 123
>gi|228929371|ref|ZP_04092394.1| ComE operon protein 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228830277|gb|EEM75891.1| ComE operon protein 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 188
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 104
>gi|111221547|ref|YP_712341.1| hypothetical protein FRAAL2113 [Frankia alni ACN14a]
gi|111149079|emb|CAJ60762.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
biosynthesis protein ribD) [Frankia alni ACN14a]
Length = 282
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 3/128 (2%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+++ + V+ + + D L L RG+T +
Sbjct: 156 DPGARLFDAEVRPIVLTCDAAPPAKRQALAAVAEVVLCGETTVDPAAALAALAERGMTRV 215
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD- 349
L EGG + + L+D + L + ++ G G +E + D
Sbjct: 216 LTEGGPLLHAQLAGAGLLDELCLTVAPMLAG-PGRMGIVEGPPWPEPATMRLVQVLAEDG 274
Query: 350 -VCLEYIG 356
+ L Y
Sbjct: 275 NLFLRYQR 282
>gi|152997358|ref|YP_001342193.1| deaminase-reductase domain-containing protein [Marinomonas sp.
MWYL1]
gi|150838282|gb|ABR72258.1| bifunctional deaminase-reductase domain protein [Marinomonas sp.
MWYL1]
Length = 181
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L +G+ +L ++GG + SF+ L+D II+ + I++G G P
Sbjct: 99 IVAKLKRKGINNLYIDGGKTI-QSFLKEDLIDEIIITQFPILLGG-GTPLF-GMLKQPLK 155
Query: 338 FMCVRRDYFGSDVC-LEYIGKN 358
F +++ Y K
Sbjct: 156 FTLTDNKVVLNELLQTSYQRKR 177
>gi|291515202|emb|CBK64412.1| Deoxycytidylate deaminase [Alistipes shahii WAL 8301]
Length = 145
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ + V LIVKD ++I G G P
Sbjct: 11 LDMRYLRMASIWAENSYCVRRK---VGALIVKDKMIISDGY---NGTPSGFENVCEDDEG 64
Query: 54 -------HAEVQALEEAGEEARGA---TAYVTLEPCSHYG 83
HAE A+ + + A T Y+T PC
Sbjct: 65 HTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPCIECS 104
>gi|257898719|ref|ZP_05678372.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
gi|293571938|ref|ZP_06682952.1| ComE operon protein 2 [Enterococcus faecium E980]
gi|257836631|gb|EEV61705.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15]
gi|291607956|gb|EFF37264.1| ComE operon protein 2 [Enterococcus faecium E980]
Length = 179
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM+ A+ S V +V++ +I G
Sbjct: 23 KRIPWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGC 79
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G+ YVT PC
Sbjct: 80 YVVDGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCLAC 122
>gi|302552478|ref|ZP_07304820.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
viridochromogenes DSM 40736]
gi|302470096|gb|EFL33189.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
viridochromogenes DSM 40736]
Length = 189
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 9/188 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
++ L AVS D + G + ++ ++V +RA DAILVG GT+ AD+P
Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPR 60
Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L G + P+++ + L +++ T V+ T+
Sbjct: 61 LLVNSPGRRAARTAAGLPEYPLKVTVSGTGDLDPEARFWHTGGE-KVLYTTDEGAERARA 119
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ + L + RGV L+VEGG + + L D + L + +
Sbjct: 120 RGLATDVVPLGAGLDWRSLLTHLHDVRGVRRLMVEGGGLIHTQLLTQGLADELQLVLAPL 179
Query: 319 VIGEGGIP 326
+G+ P
Sbjct: 180 FVGDPAAP 187
>gi|238021048|ref|ZP_04601474.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
gi|237868028|gb|EEP69034.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147]
Length = 238
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 1 MP----VSSFDA--RFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGG- 51
MP D R+M AAL + +G V ++V G +I +
Sbjct: 81 MPPVALFPPQDEMERWMRAALFQAAEAAKLGEV----PVGAVVVHRGEIIAQAHNRCVAD 136
Query: 52 ---CPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+QAL AG+ YV+LEPC+
Sbjct: 137 CSISHHAEIQALAAAGQVLGNYRLNECDVYVSLEPCAMC 175
>gi|229123865|ref|ZP_04253058.1| ComE operon protein 2 [Bacillus cereus 95/8201]
gi|228659579|gb|EEL15226.1| ComE operon protein 2 [Bacillus cereus 95/8201]
Length = 188
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 104
>gi|254384103|ref|ZP_04999448.1| cytidine/deoxycytidine deaminase [Streptomyces sp. Mg1]
gi|194342993|gb|EDX23959.1| cytidine/deoxycytidine deaminase [Streptomyces sp. Mg1]
Length = 142
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M ALR + G V +++ DG ++ G HAEV AL A
Sbjct: 1 MRLALREAARAVPAGDV----PVGAVVLGPDGELLATGYNEREATGDPTAHAEVLALRRA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 57 AAALGEWRLPGCTLVVTLEPCVMC 80
>gi|62327216|ref|YP_223954.1| deoxycytidylate deaminase [Phage phiJL001]
gi|50059534|gb|AAT69506.1| deoxycytidylate deaminase [Phage phiJL001]
Length = 244
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 27/100 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
+D ++ A ++ ++ + V ++V D V+G G G P
Sbjct: 105 KWDRDYLKLAEFWA--NLKSKDPSTKVGAVVVSEDNRVVGMGY---NGFPVGVEDSRERL 159
Query: 54 -----------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE A+ AG +A+G T Y TL PC+
Sbjct: 160 EDRPTKYMYVVHAEPNAILTAGLQAKGGTLYCTLFPCNEC 199
>gi|42518285|ref|NP_964215.1| ComE operon protein 2. [Lactobacillus johnsonii NCC 533]
gi|227888945|ref|ZP_04006750.1| competence protein ComEB [Lactobacillus johnsonii ATCC 33200]
gi|41582569|gb|AAS08181.1| ComE operon protein 2 [Lactobacillus johnsonii NCC 533]
gi|227850533|gb|EEJ60619.1| competence protein ComEB [Lactobacillus johnsonii ATCC 33200]
gi|329666595|gb|AEB92543.1| dCMP deaminase [Lactobacillus johnsonii DPC 6026]
Length = 162
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 25/98 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD +I G + G PH
Sbjct: 10 QYFMMQALVIAQRS---TCDRALVGSVLVKDDRMIATGYNGSVSGQPHCDDVGHLMVDGH 66
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHYG 83
E+ AL + G G YVT PC +
Sbjct: 67 CVRTIHSEMNALIQCAKNGISTEGTEIYVTYFPCFNCS 104
>gi|88856373|ref|ZP_01131032.1| hypothetical protein A20C1_00495 [marine actinobacterium PHSC20C1]
gi|88814457|gb|EAR24320.1| hypothetical protein A20C1_00495 [marine actinobacterium PHSC20C1]
Length = 255
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L L RG EGG + + I +VD + L S + G +
Sbjct: 168 ELKRTLAERGYPQQHGEGGPTLFATMIGQGVVDELCLTVSPRLEGGSARRIVDAAEATPQ 227
Query: 337 NFMCVRR-DYFGSDVCLEYIG 356
+ L Y+
Sbjct: 228 AMSLAHVLSAADGTLLLRYVR 248
>gi|291460249|ref|ZP_06599639.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
str. F0262]
gi|291417196|gb|EFE90915.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078
str. F0262]
Length = 166
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----------- 52
S++ FM A +R + V IV +D ++ G +
Sbjct: 12 SWEEYFMGVAEMSARRSK---DPSTQVGACIVSRDNKILSMGYNGFPRGCSDDLFPWTKI 68
Query: 53 --------------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ G GA YVTL PC+
Sbjct: 69 HVSDDPYNAKYFYSTHAELNAILNYRGGSLEGAKLYVTLFPCNEC 113
>gi|242802981|ref|XP_002484082.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
gi|218717427|gb|EED16848.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500]
Length = 148
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAEVQALEEAGEEA- 67
A+ +R + +V KDG ++GRG G H E+ ALE +G
Sbjct: 10 AVEEARQGQAEGGV--PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPA 67
Query: 68 ---RGATAYVTLEPCSHYGRSP 86
GAT Y TL PC +
Sbjct: 68 SAYEGATMYTTLSPCDMCTGAC 89
>gi|159038151|ref|YP_001537404.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
gi|157916986|gb|ABV98413.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205]
Length = 162
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY-GGCPHAEVQALE 61
+ D +++ A+ S T SV +IV G + G + HAE A+
Sbjct: 5 TRTDRQWLLRAIELS-RGSSPVGTAYSVGAIIVAAAGDQLTEGYSRDTDAHTHAEESAVA 63
Query: 62 EAGE-----EARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
+ + GAT Y ++EPC+ R C + I+ GIRRVV + +P + G
Sbjct: 64 KVERLAPHPDLTGATLYSSMEPCTSRKSRPRTCTELILAAGIRRVVYALREPPLLAECHG 123
Query: 116 LQWLSQKGIIV 126
+ L GI V
Sbjct: 124 TEVLRSSGIDV 134
>gi|30264397|ref|NP_846774.1| ComE operon protein 2 [Bacillus anthracis str. Ames]
gi|42783453|ref|NP_980700.1| ComE operon protein 2 [Bacillus cereus ATCC 10987]
gi|47569322|ref|ZP_00240006.1| comE operon protein 2 [Bacillus cereus G9241]
gi|47778306|ref|YP_022694.1| ComE operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
gi|49187220|ref|YP_030472.1| ComE operon protein 2 [Bacillus anthracis str. Sterne]
gi|49481368|ref|YP_038380.1| comE operon protein 2 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65321698|ref|ZP_00394657.1| COG2131: Deoxycytidylate deaminase [Bacillus anthracis str. A2012]
gi|165872069|ref|ZP_02216709.1| ComE operon protein 2 [Bacillus anthracis str. A0488]
gi|167634581|ref|ZP_02392901.1| ComE operon protein 2 [Bacillus anthracis str. A0442]
gi|167638591|ref|ZP_02396867.1| ComE operon protein 2 [Bacillus anthracis str. A0193]
gi|170687331|ref|ZP_02878548.1| ComE operon protein 2 [Bacillus anthracis str. A0465]
gi|170707358|ref|ZP_02897812.1| ComE operon protein 2 [Bacillus anthracis str. A0389]
gi|177653276|ref|ZP_02935528.1| ComE operon protein 2 [Bacillus anthracis str. A0174]
gi|190566854|ref|ZP_03019770.1| ComE operon protein 2 [Bacillus anthracis Tsiankovskii-I]
gi|196034327|ref|ZP_03101736.1| ComE operon protein 2 [Bacillus cereus W]
gi|196039164|ref|ZP_03106470.1| ComE operon protein 2 [Bacillus cereus NVH0597-99]
gi|196044885|ref|ZP_03112119.1| ComE operon protein 2 [Bacillus cereus 03BB108]
gi|206975981|ref|ZP_03236891.1| ComE operon protein 2 [Bacillus cereus H3081.97]
gi|217961816|ref|YP_002340386.1| ComE operon protein 2 [Bacillus cereus AH187]
gi|222097771|ref|YP_002531828.1| come operon protein 2 [Bacillus cereus Q1]
gi|227817103|ref|YP_002817112.1| ComE operon protein 2 [Bacillus anthracis str. CDC 684]
gi|229603209|ref|YP_002868616.1| ComE operon protein 2 [Bacillus anthracis str. A0248]
gi|254684083|ref|ZP_05147943.1| comE operon protein 2 [Bacillus anthracis str. CNEVA-9066]
gi|254721917|ref|ZP_05183706.1| comE operon protein 2 [Bacillus anthracis str. A1055]
gi|254736431|ref|ZP_05194137.1| comE operon protein 2 [Bacillus anthracis str. Western North
America USA6153]
gi|254741468|ref|ZP_05199155.1| comE operon protein 2 [Bacillus anthracis str. Kruger B]
gi|254750907|ref|ZP_05202946.1| comE operon protein 2 [Bacillus anthracis str. Vollum]
gi|254757765|ref|ZP_05209792.1| comE operon protein 2 [Bacillus anthracis str. Australia 94]
gi|300118681|ref|ZP_07056409.1| ComE operon protein 2 [Bacillus cereus SJ1]
gi|301055818|ref|YP_003794029.1| ComE operon protein 2 [Bacillus anthracis CI]
gi|30259055|gb|AAP28260.1| ComE operon protein 2 [Bacillus anthracis str. Ames]
gi|42739382|gb|AAS43308.1| ComE operon protein 2 [Bacillus cereus ATCC 10987]
gi|47552011|gb|AAT35428.1| ComE operon protein 2 [Bacillus anthracis str. 'Ames Ancestor']
gi|47553993|gb|EAL12360.1| comE operon protein 2 [Bacillus cereus G9241]
gi|49181147|gb|AAT56523.1| ComE operon protein 2 [Bacillus anthracis str. Sterne]
gi|49332924|gb|AAT63570.1| comE operon protein 2 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|164712200|gb|EDR17737.1| ComE operon protein 2 [Bacillus anthracis str. A0488]
gi|167513439|gb|EDR88809.1| ComE operon protein 2 [Bacillus anthracis str. A0193]
gi|167530033|gb|EDR92768.1| ComE operon protein 2 [Bacillus anthracis str. A0442]
gi|170127602|gb|EDS96475.1| ComE operon protein 2 [Bacillus anthracis str. A0389]
gi|170668526|gb|EDT19272.1| ComE operon protein 2 [Bacillus anthracis str. A0465]
gi|172081558|gb|EDT66630.1| ComE operon protein 2 [Bacillus anthracis str. A0174]
gi|190561845|gb|EDV15814.1| ComE operon protein 2 [Bacillus anthracis Tsiankovskii-I]
gi|195992869|gb|EDX56828.1| ComE operon protein 2 [Bacillus cereus W]
gi|196024373|gb|EDX63046.1| ComE operon protein 2 [Bacillus cereus 03BB108]
gi|196029791|gb|EDX68392.1| ComE operon protein 2 [Bacillus cereus NVH0597-99]
gi|206745733|gb|EDZ57130.1| ComE operon protein 2 [Bacillus cereus H3081.97]
gi|217065815|gb|ACJ80065.1| ComE operon protein 2 [Bacillus cereus AH187]
gi|221241829|gb|ACM14539.1| comE operon protein 2 [Bacillus cereus Q1]
gi|227007781|gb|ACP17524.1| ComE operon protein 2 [Bacillus anthracis str. CDC 684]
gi|229267617|gb|ACQ49254.1| ComE operon protein 2 [Bacillus anthracis str. A0248]
gi|298723930|gb|EFI64644.1| ComE operon protein 2 [Bacillus cereus SJ1]
gi|300377987|gb|ADK06891.1| comE operon protein 2 [Bacillus cereus biovar anthracis str. CI]
gi|324328230|gb|ADY23490.1| ComE operon protein 2 [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 185
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 101
>gi|313665291|ref|YP_004047162.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mycoplasma leachii PG50]
gi|312949249|gb|ADR23845.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mycoplasma leachii PG50]
Length = 160
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC-------------- 52
FM A + N V ++V + ++ G +
Sbjct: 12 HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDDFPWSKTNED 68
Query: 53 ---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + YVTL PC+
Sbjct: 69 WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNEC 107
>gi|218885276|ref|YP_002434597.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756230|gb|ACL07129.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 175
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 21 HVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGA 70
G V ++V + G +IG G ++ HAE+ AL EA GA
Sbjct: 45 GQGEV----PVGAVVVDRQGRIIGTGHNTPVASHDPSAHAEMVALREACRNTGNYRLDGA 100
Query: 71 TAYVTLEPCSHY 82
VTLEPC
Sbjct: 101 VLVVTLEPCLMC 112
>gi|319782463|ref|YP_004141939.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317168351|gb|ADV11889.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 233
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFM 339
G++ LL+EGGA++ SF+ + LVD + L + + G +E +
Sbjct: 152 ELGISRLLLEGGASINGSFLAAGLVDELSLLVAPAIDGRAANQGFVEFGESGLAGKTQLS 211
Query: 340 CVRRDYF 346
+
Sbjct: 212 LKSCEAL 218
>gi|313631859|gb|EFR99022.1| reductase family protein [Listeria seeligeri FSL N1-067]
Length = 159
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ + GGA + F+ + +D ++ + I++G+G PL E E + +FG
Sbjct: 91 NIWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDNEHALELEKVSHFGQ 147
Query: 349 DVCLEY 354
L Y
Sbjct: 148 FAQLTY 153
>gi|289435840|ref|YP_003465712.1| hypothetical protein lse_2479 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172084|emb|CBH28630.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313636214|gb|EFS02047.1| riboflavin biosynthesis protein RibD C- domain protein [Listeria
seeligeri FSL S4-171]
Length = 174
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ + GGA + F+ + +D ++ + I++G+G PL E E + +FG
Sbjct: 106 NIWLVGGAKLVKQFLKEKAIDRFVITIAPIILGKG---IPLFEEDNEHALELEKVSHFGQ 162
Query: 349 DVCLEY 354
L Y
Sbjct: 163 FAQLTY 168
>gi|329117421|ref|ZP_08246138.1| putative ComE operon protein 2 [Streptococcus parauberis NCFD 2020]
gi|326907826|gb|EGE54740.1| putative ComE operon protein 2 [Streptococcus parauberis NCFD 2020]
Length = 153
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ T V ++VKD +I G G
Sbjct: 10 YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSATDNCDEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTAGTELYVTHFPCINC 102
>gi|71894411|ref|YP_278519.1| deoxycytidylate deaminase fusion protein [Mycoplasma synoviae 53]
Length = 169
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP--------- 53
S+D FM A + + V IV + +IG G G
Sbjct: 13 SWDDYFMGLAKLSALRSK---DPSTQVGACIVNRQNHIIGMGYNGMPNGEDELFPWESNS 69
Query: 54 ------------HAEVQALEEAGEEAR--GATAYVTLEPCSHY 82
HAEV A+ + AT Y +L PCS+
Sbjct: 70 SDEKDNKYPYVMHAEVNAILNTSVMLQNSNATIYTSLFPCSNC 112
>gi|19076024|ref|NP_588524.1| cytosine deaminase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74626752|sp|O59834|FCYS_SCHPO RecName: Full=Probable cytosine deaminase; AltName: Full=Cytosine
aminohydrolase
gi|3136043|emb|CAA19074.1| cytosine deaminase (predicted) [Schizosaccharomyces pombe]
Length = 162
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG--CPHAEV 57
+S D ++ A++ S+ C+IV D +++ G G HAE
Sbjct: 5 ELSEKDLAYLREAIKVSQQARDEGQ--HPFGCIIVDENDNVIMSAGNRVPDGDVTQHAET 62
Query: 58 QA---LEEAGEEARGATAYVTLEPCSHYG 83
+A + + + T Y + EPC+
Sbjct: 63 RAVGLITKTRRDLEKCTLYTSTEPCAMCS 91
>gi|52141178|ref|YP_085651.1| ComE operon protein 2 [Bacillus cereus E33L]
gi|51974647|gb|AAU16197.1| comE operon protein 2 [Bacillus cereus E33L]
Length = 185
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 1 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 58 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 101
>gi|58617315|ref|YP_196514.1| hypothetical protein ERGA_CDS_05880 [Ehrlichia ruminantium str.
Gardel]
gi|58416927|emb|CAI28040.1| Conserved hypothetical protein (putative cytidine deaminase)
[Ehrlichia ruminantium str. Gardel]
Length = 145
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 19/125 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
+M A+ ++ V +IV +G VI + HAE+ ++ A
Sbjct: 6 YMRLAIGKAQEDCLEV----PVGAVIVYNGKVISCQSNSNIKNCDPTAHAEILSIRHACI 61
Query: 65 ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
YVTLEPC CAQ I IRR+ + G +
Sbjct: 62 VLSTHILNQCDMYVTLEPC------AMCAQAISFARIRRLYFGAYNKKYGGIENGARVFH 115
Query: 121 QKGII 125
+
Sbjct: 116 FCHSV 120
>gi|84496266|ref|ZP_00995120.1| hypothetical protein JNB_02065 [Janibacter sp. HTCC2649]
gi|84383034|gb|EAP98915.1| hypothetical protein JNB_02065 [Janibacter sp. HTCC2649]
Length = 231
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRD 344
G+ +L EGG + HS +++ LVD L + ++G + E
Sbjct: 151 GMPRVLAEGGPHLFHSLLDAGLVDEFALTLAPRLVGGDHVRVVAGIPLGGESGLDTEIVH 210
Query: 345 YFGSD 349
D
Sbjct: 211 LLEED 215
>gi|328847991|gb|EGF97265.1| hypothetical protein MELLADRAFT_54347 [Melampsora larici-populina
98AG31]
Length = 295
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 33/115 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT--------------- 47
+D FM+ A S + V +++ +D V+ G
Sbjct: 150 DWDQYFMTLANLASLRSNCMKR---RVGAVLITKRDKRVLSTGYNGTPRGMTNCNEGGCA 206
Query: 48 --AYGGCP-------HAEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCA 89
+ G HAE AL EAG + G+T Y PC
Sbjct: 207 RFSKCGTDLNECLCLHAEENALLEAGRDRMGAGEGSTLYCNTCPCLRCSVKIVQC 261
>gi|299529821|ref|ZP_07043254.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
gi|298722235|gb|EFI63159.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
S44]
Length = 146
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE----- 61
M A+ + + ++ + V+ GV + HAE+QA+
Sbjct: 1 MRLAVDLAHANRLQGGR--PFGAVLAQGNEVVATGVNEIIVSHDPSTHAEMQAIRAGTQK 58
Query: 62 EAGEEARGATAYVTLEPCSHY 82
A G + Y + PC
Sbjct: 59 RANPSLAGLSIYASGHPCPMC 79
>gi|197302162|ref|ZP_03167221.1| hypothetical protein RUMLAC_00888 [Ruminococcus lactaris ATCC
29176]
gi|197298593|gb|EDY33134.1| hypothetical protein RUMLAC_00888 [Ruminococcus lactaris ATCC
29176]
Length = 164
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 35/114 (30%)
Query: 1 MPVSS-------FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV------ 46
M +S +D FM A+ N V C IV +D ++ G
Sbjct: 1 MQMSDKRTDYLSWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGLPIG 57
Query: 47 -----------------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ +G GA YV+L PC+
Sbjct: 58 CSDDEFPWAREGEDPLDTKYVYTTHSELNAILNYSGGSLAGAKLYVSLFPCNEC 111
>gi|42561111|ref|NP_975562.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492608|emb|CAE77204.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|256384072|gb|ACU78642.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384904|gb|ACU79473.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455570|gb|ADH21805.1| deoxycytidylate deaminase (dCMP deaminase) [synthetic Mycoplasma
mycoides JCVI-syn1.0]
gi|301320471|gb|ADK69114.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
Length = 160
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC-------------- 52
FM A + N V ++V + ++ G +
Sbjct: 12 HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDEFPWSKNNED 68
Query: 53 ---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + YVTL PC+
Sbjct: 69 WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNEC 107
>gi|289766913|ref|ZP_06526291.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
gi|289697112|gb|EFD64541.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
Length = 248
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ + EGG + + + LVD + L S ++
Sbjct: 174 RGLRRIDCEGGPRLFGALTAAGLVDELRLTVSPLLTAGPAGRIATGPPIPPTGLRLATAL 233
Query: 345 YFGSDVCLEYI 355
+ L Y+
Sbjct: 234 AEDDTLLLRYL 244
>gi|256783031|ref|ZP_05521462.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces
lividans TK24]
Length = 247
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ + EGG + + + LVD + L S ++
Sbjct: 173 RGLRRIDCEGGPRLFGALTAAGLVDELRLTVSPLLTAGPAGRIATGPPIPPTGLRLATAL 232
Query: 345 YFGSDVCLEYI 355
+ L Y+
Sbjct: 233 AEDDTLLLRYL 243
>gi|303277403|ref|XP_003057995.1| cytidine/deoxycytidylate deaminase family protein [Micromonas
pusilla CCMP1545]
gi|226460652|gb|EEH57946.1| cytidine/deoxycytidylate deaminase family protein [Micromonas
pusilla CCMP1545]
Length = 201
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-----AYGGCPHAEVQALEEA 63
MS A+ ++ V ++V+ G V+ HAE++ + +
Sbjct: 1 MSLAIEEAKLA--SRRLEVPVGAVLVRASTGEVLAS-HHNTVDEEDDPTAHAELKCIRDG 57
Query: 64 GEEARG------ATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 58 AKRLGGWRYLAETTLYVTLEPCPMC 82
>gi|294508554|ref|YP_003572613.1| Conserved hypothetical protein containing cytidine and
deoxycytidylate deaminase zinc-binding protein
[Salinibacter ruber M8]
gi|294344883|emb|CBH25661.1| Conserved hypothetical protein containing cytidine and
deoxycytidylate deaminase zinc-binding protein
[Salinibacter ruber M8]
Length = 158
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGG 51
MP S RF+ AA+ + + NP ++V G V+ G T
Sbjct: 1 MPDSVDALDHERFVRAAIDEAASAQD--AGNPPFGAVLVGPGGTVLDRAGNTEGRTGDC- 57
Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE + A E AT Y + EPC+
Sbjct: 58 TGHAETNLVRAASQEYDPERLAKATLYASTEPCAMC 93
>gi|198274233|ref|ZP_03206765.1| hypothetical protein BACPLE_00373 [Bacteroides plebeius DSM 17135]
gi|198272908|gb|EDY97177.1| hypothetical protein BACPLE_00373 [Bacteroides plebeius DSM 17135]
Length = 144
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
V ++V ++ R T + HAE+QAL A T YVT+EPC
Sbjct: 25 PVGAVVVCRDRILARAHNLTETLHDVTAHAEMQALTAAANSLGAKYLTDCTLYVTVEPCV 84
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
CA I + R+V +D Q L K ++V
Sbjct: 85 ------MCAGAIAWSQVGRLVFGAEDEKRGYQRYAPQALHPKTVVV 124
>gi|126651687|ref|ZP_01723890.1| hypothetical protein BB14905_13780 [Bacillus sp. B14905]
gi|126591636|gb|EAZ85742.1| hypothetical protein BB14905_13780 [Bacillus sp. B14905]
Length = 176
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 2/125 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + + + + + + DL L + T + + G
Sbjct: 53 RTYDYIMEHNDTFPYPDKKCYVFSKSQTGKVEHVEFVQGDLVAFTKNLKQQPGTKIWMVG 112
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + +F+ +LVD I+ + ++G GIP + E + + +G V + Y
Sbjct: 113 GADILDAFLQEQLVDEWIITITPHLLGA-GIPLFKQPRPFE-DLKLLEIKRYGQMVQMHY 170
Query: 355 IGKNL 359
K
Sbjct: 171 KVKKE 175
>gi|116628878|ref|YP_814050.1| deoxycytidylate deaminase [Lactobacillus gasseri ATCC 33323]
gi|238852844|ref|ZP_04643249.1| ComE operon protein 2 [Lactobacillus gasseri 202-4]
gi|268318770|ref|YP_003292426.1| hypothetical protein FI9785_275 [Lactobacillus johnsonii FI9785]
gi|282852543|ref|ZP_06261885.1| putative ComE operon protein 2 [Lactobacillus gasseri 224-1]
gi|300362471|ref|ZP_07058647.1| competence protein ComEB [Lactobacillus gasseri JV-V03]
gi|116094460|gb|ABJ59612.1| Deoxycytidylate deaminase [Lactobacillus gasseri ATCC 33323]
gi|238834538|gb|EEQ26770.1| ComE operon protein 2 [Lactobacillus gasseri 202-4]
gi|262397145|emb|CAX66159.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
gi|282556285|gb|EFB61905.1| putative ComE operon protein 2 [Lactobacillus gasseri 224-1]
gi|300353462|gb|EFJ69334.1| competence protein ComEB [Lactobacillus gasseri JV-V03]
Length = 162
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 25/98 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD +I G + G PH
Sbjct: 10 QYFMMQALVIAQRS---TCDRALVGSVLVKDDRMIATGYNGSVSGQPHCDDVGHLMVDGH 66
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHYG 83
E+ AL + G G YVT PC +
Sbjct: 67 CVRTIHSEMNALIQCAKNGISTEGTEIYVTYFPCFNCS 104
>gi|323358758|ref|YP_004225154.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
gi|323275129|dbj|BAJ75274.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
Length = 183
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
V ++V G V G G HAEV AL A E G T VTLEPC
Sbjct: 55 PVGAVVVDASGTVRGEGRNLREATHDPTAHAEVVALRRAAESLGTWHLAGCTLVVTLEPC 114
Query: 80 SHY 82
Sbjct: 115 VMC 117
>gi|227551296|ref|ZP_03981345.1| competence protein ComEB [Enterococcus faecium TX1330]
gi|257887587|ref|ZP_05667240.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
gi|257896083|ref|ZP_05675736.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
gi|227179576|gb|EEI60548.1| competence protein ComEB [Enterococcus faecium TX1330]
gi|257823641|gb|EEV50573.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733]
gi|257832648|gb|EEV59069.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12]
Length = 179
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM+ A+ S V +V++ +I G
Sbjct: 23 KRIPWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGC 79
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G+ YVT PC
Sbjct: 80 YIVDGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCLAC 122
>gi|238917857|ref|YP_002931374.1| dCMP deaminase [Eubacterium eligens ATCC 27750]
gi|238873217|gb|ACR72927.1| dCMP deaminase [Eubacterium eligens ATCC 27750]
Length = 159
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 31/100 (31%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-------------AYG 50
S+D FM A N V IV +D ++ G
Sbjct: 10 SWDEYFMGIATLSGMRSK---DPNTQVGACIVSQDNKILSMGYNGLPRGCSDDEFPWNRD 66
Query: 51 G-------CPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G A YVTL PC+
Sbjct: 67 GEDNKYFYTTHSELNAILNYRGGSLDNAKLYVTLFPCNEC 106
>gi|326918570|ref|XP_003205561.1| PREDICTED: deoxycytidylate deaminase-like [Meleagris gallopavo]
Length = 190
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 33/153 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 29 EYFMAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCSDDALPWTRTAAH 85
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ A+ + + +G + YV L PC + I + +
Sbjct: 86 RLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPC-----NECAKLIIQAGIKEVIFM 140
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
D + GI+ K
Sbjct: 141 SDKYHDSIEMTAARRMFDLAGIVYREFKPKCTK 173
>gi|74216091|dbj|BAE23721.1| unnamed protein product [Mus musculus]
Length = 150
Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 34/103 (33%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A ++ + V IV + ++G G G P
Sbjct: 23 EYFMAVAFLSAQRSK---DPSSQVGACIVNTENKIVGIGY---NGMPNGCSDDLLPWRRT 76
Query: 54 -------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 77 AENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 119
>gi|225010991|ref|ZP_03701457.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
gi|225004898|gb|EEG42854.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C]
Length = 146
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + W V ++VKD ++I G G P
Sbjct: 11 DQAYLRMA---AEWGKLSYCKRKQVGAIVVKDRMIISDGY---NGTPSGFENFCEDETGY 64
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE AL + + + GAT Y+TL PC
Sbjct: 65 TKWYVLHAEANALSKVAASTQSSEGATLYITLSPCKECS 103
>gi|162450858|ref|YP_001613225.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
gi|161161440|emb|CAN92745.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56']
Length = 177
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
S DAR+M AL + + V L+V G V+ RG HAEV A
Sbjct: 23 SVDARWMREALA--EAEAAAGAGDVPVGALVVDAAGTVLARGRNRREIDQDPTGHAEVDA 80
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A GAT Y TLEPC
Sbjct: 81 LRAAARRLGHWRLEGATVYATLEPCPMC 108
>gi|306826735|ref|ZP_07460037.1| competence protein ComEB [Streptococcus pyogenes ATCC 10782]
gi|304431024|gb|EFM34031.1| competence protein ComEB [Streptococcus pyogenes ATCC 10782]
Length = 163
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 20 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 76
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 77 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 112
>gi|302895311|ref|XP_003046536.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
77-13-4]
gi|256727463|gb|EEU40823.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIPS 327
D + + L+ +TS++VEGG + +S +N ++DS+I+ + +G+GG+
Sbjct: 171 MRFDWRAVFDALLREHLTSVMVEGGGQIINSLLNPTFHDMIDSVIVTIAPTWLGQGGVVV 230
Query: 328 PLEEGYL-------EKNFMCVRRDYFGSDVCL 352
+ V FG DV L
Sbjct: 231 SPDRLQDSAGVPVPAARLSEVSWHPFGEDVVL 262
>gi|222151486|ref|YP_002560642.1| late competence operon required for DNA binding and uptake ComEB
[Macrococcus caseolyticus JCSC5402]
gi|222120611|dbj|BAH17946.1| late competence operon required for DNA binding and uptake ComEB
[Macrococcus caseolyticus JCSC5402]
Length = 153
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGG 51
M + FM+ + + T T SV IVK+ +I G G
Sbjct: 1 MERIQWKEYFMAQSQLLALRS---TCTRLSVGATIVKNNRIIAGGYNGSVSGEVHCIDAG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GA YVT PC H
Sbjct: 58 CYVEGGHCIRTIHAEMNALLQCAKMGVTTEGADIYVTHFPCIHC 101
>gi|218663270|ref|ZP_03519200.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli IE4771]
Length = 157
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ S+ + ++V+DG VI R T + HAE+ +
Sbjct: 2 ENHEPFLREAIALSKSAMANGDE--PFGSVLVRDGDVILRAENSVFTGHDMTNHAEMNLV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 60 KLAAKHYDPAFLADCTLYTSTEPCAMCS 87
>gi|163786644|ref|ZP_02181092.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
gi|159878504|gb|EDP72560.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1]
Length = 143
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V LIVKD ++I G G P
Sbjct: 10 DKAYLRIAKEWGKLSHCKRK---QVGALIVKDRMIISDGY---NGTPTGFENYCEDDEGY 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + +GAT Y+TL PC
Sbjct: 64 TKWYVLHAEANAILKVASSTQSCKGATLYITLSPCKECS 102
>gi|33239578|ref|NP_874520.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237103|gb|AAP99172.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 223
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 10/222 (4%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT--VLADD 204
I L +A+S D + + G + G + + A SDA L+G GT + +
Sbjct: 1 MSLPWIRLVLAISLDGRLAPSNGGKANLGGEGDRRVLEEALAWSDATLMGSGTLKIHKNT 60
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VIIVTENDDPVLALAFRKK 263
+ + H+ R +S S +T I F +
Sbjct: 61 CLIHDSKLIRERHTQGRSTQPISLIISKQSSFPQTWQFFRQPITRWLLIPKAKTQIFTSE 120
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE- 322
+ L L +G + +++ GG + S + VD + L + ++G
Sbjct: 121 GFEQQIVMQDNWSGTLHDLNQKGCSRIVLLGGIQLITSLLLEDKVDELQLTFTPRLLGGK 180
Query: 323 -----GGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
G S E + + G + V ++Y+ K
Sbjct: 181 YTWTASGKNSLPIELTKSDAWHLKGIEELGKNEVMIKYLRKR 222
>gi|319898379|ref|YP_004158472.1| Cytosine/adenosine deaminase [Bartonella clarridgeiae 73]
gi|319402343|emb|CBI75882.1| Cytosine/adenosine deaminase [Bartonella clarridgeiae 73]
Length = 150
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M ++ M AL ++ V +I +I R T Y HAE
Sbjct: 1 MRLTP-----MEIALLEAQSAKKQAEI--PVGAVITHGKTIIARAGNYIKTPYDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
++ + A E YVTLEPC CA I IR + D
Sbjct: 54 MRVIRIACQIFKSERIPECDLYVTLEPC------AMCAAAISFARIRNLYYATQDSKGGA 107
Query: 112 SGRGLQWLSQKGII 125
G ++ Q
Sbjct: 108 IEHGPRFYQQPTCH 121
>gi|264678844|ref|YP_003278751.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
gi|262209357|gb|ACY33455.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni
CNB-2]
Length = 146
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE----- 61
M A+ + + ++ + V+ GV + HAE+QA+
Sbjct: 1 MRMAVDLAHANRLKGGR--PFGAVLAQGNEVVATGVNEIIASHDPSTHAEMQAIRAGTQK 58
Query: 62 EAGEEARGATAYVTLEPCSHY 82
A G + Y + PC
Sbjct: 59 RANPSLAGLSIYASGHPCPMC 79
>gi|163753563|ref|ZP_02160686.1| deoxycytidylate deaminase [Kordia algicida OT-1]
gi|161325777|gb|EDP97103.1| deoxycytidylate deaminase [Kordia algicida OT-1]
Length = 144
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 38/144 (26%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V +IVKD ++I G G P
Sbjct: 10 DHAYLRMAKEWGKLSYCKRK---QVGAIIVKDRMIISDGY---NGTPSGFENFCEDEEGY 63
Query: 54 ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAE A+ + + GAT Y+T+ PC C++ I + GI RVV
Sbjct: 64 TKWYVLHAEANAILKVAASTQSCVGATLYITMSPC------KECSKLIHQAGITRVVYVD 117
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR 128
G+Q+L + G+ V+
Sbjct: 118 AYK----DDSGIQFLQRAGVEVEH 137
>gi|15842209|ref|NP_337246.1| hypothetical protein MT2745 [Mycobacterium tuberculosis CDC1551]
gi|13882497|gb|AAK47060.1| riboflavin-specific deaminase-related protein [Mycobacterium
tuberculosis CDC1551]
Length = 239
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L++ L RG+ +L EGG + +F+ ++D + L + V+G G +
Sbjct: 158 VLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIVTGPGQVLT 217
Query: 337 NFMCVRRDYFGSD---VCLEYIG 356
C D + Y+
Sbjct: 218 RMRCAHV--LTDDSGYLYTRYVK 238
>gi|15609808|ref|NP_217187.1| hypothetical protein Rv2671 [Mycobacterium tuberculosis H37Rv]
gi|31793843|ref|NP_856336.1| hypothetical protein Mb2690 [Mycobacterium bovis AF2122/97]
gi|121638546|ref|YP_978770.1| hypothetical protein BCG_2684 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662512|ref|YP_001284035.1| hypothetical protein MRA_2699 [Mycobacterium tuberculosis H37Ra]
gi|148823860|ref|YP_001288615.1| hypothetical protein TBFG_12686 [Mycobacterium tuberculosis F11]
gi|167970105|ref|ZP_02552382.1| hypothetical protein MtubH3_19568 [Mycobacterium tuberculosis
H37Ra]
gi|215404634|ref|ZP_03416815.1| hypothetical protein Mtub0_13300 [Mycobacterium tuberculosis
02_1987]
gi|215412467|ref|ZP_03421209.1| hypothetical protein Mtub9_14005 [Mycobacterium tuberculosis
94_M4241A]
gi|215428096|ref|ZP_03426015.1| hypothetical protein MtubT9_17568 [Mycobacterium tuberculosis T92]
gi|215431611|ref|ZP_03429530.1| hypothetical protein MtubE_13253 [Mycobacterium tuberculosis
EAS054]
gi|215446927|ref|ZP_03433679.1| hypothetical protein MtubT_13677 [Mycobacterium tuberculosis T85]
gi|218754408|ref|ZP_03533204.1| hypothetical protein MtubG1_13689 [Mycobacterium tuberculosis GM
1503]
gi|219558677|ref|ZP_03537753.1| hypothetical protein MtubT1_15772 [Mycobacterium tuberculosis T17]
gi|224991038|ref|YP_002645727.1| hypothetical protein JTY_2678 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798247|ref|YP_003031248.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis KZN 1435]
gi|254232778|ref|ZP_04926105.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis C]
gi|254365333|ref|ZP_04981378.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis str. Haarlem]
gi|254551722|ref|ZP_05142169.1| hypothetical protein Mtube_14899 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187688|ref|ZP_05765162.1| hypothetical protein MtubCP_16894 [Mycobacterium tuberculosis
CPHL_A]
gi|260201799|ref|ZP_05769290.1| hypothetical protein MtubT4_17295 [Mycobacterium tuberculosis T46]
gi|260205981|ref|ZP_05773472.1| hypothetical protein MtubK8_16955 [Mycobacterium tuberculosis K85]
gi|289444212|ref|ZP_06433956.1| riboflavin biosynthesis protein RibD domain-containing protein
[Mycobacterium tuberculosis T46]
gi|289448325|ref|ZP_06438069.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis CPHL_A]
gi|289553544|ref|ZP_06442754.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis KZN 605]
gi|289570844|ref|ZP_06451071.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis T17]
gi|289575368|ref|ZP_06455595.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis K85]
gi|289746470|ref|ZP_06505848.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium tuberculosis 02_1987]
gi|289751321|ref|ZP_06510699.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis T92]
gi|289754772|ref|ZP_06514150.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289758798|ref|ZP_06518176.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289762841|ref|ZP_06522219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis GM 1503]
gi|294994236|ref|ZP_06799927.1| hypothetical protein Mtub2_06908 [Mycobacterium tuberculosis 210]
gi|297635279|ref|ZP_06953059.1| hypothetical protein MtubK4_14205 [Mycobacterium tuberculosis KZN
4207]
gi|297732275|ref|ZP_06961393.1| hypothetical protein MtubKR_14354 [Mycobacterium tuberculosis KZN
R506]
gi|298526140|ref|ZP_07013549.1| RibD [Mycobacterium tuberculosis 94_M4241A]
gi|306776951|ref|ZP_07415288.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu001]
gi|306780853|ref|ZP_07419190.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu002]
gi|306785476|ref|ZP_07423798.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu003]
gi|306790074|ref|ZP_07428396.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu004]
gi|306794157|ref|ZP_07432459.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu005]
gi|306798576|ref|ZP_07436878.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu006]
gi|306804435|ref|ZP_07441103.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu008]
gi|306807527|ref|ZP_07444195.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu007]
gi|306968729|ref|ZP_07481390.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu009]
gi|306973064|ref|ZP_07485725.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu010]
gi|307080772|ref|ZP_07489942.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu011]
gi|307085364|ref|ZP_07494477.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu012]
gi|313659608|ref|ZP_07816488.1| hypothetical protein MtubKV_14359 [Mycobacterium tuberculosis KZN
V2475]
gi|1550712|emb|CAB02325.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
(RIBOFLAVIN-SPECIFIC DEAMINASE) +
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
REDUCTASE) [Mycobacterium tuberculosis H37Rv]
gi|31619437|emb|CAD94875.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD:
DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
(RIBOFLAVIN-SPECIFIC DEAMINASE) +
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
REDUCTASE) [Mycobacterium bovis AF2122/97]
gi|121494194|emb|CAL72672.1| Possible bifunctional enzyme riboflavin biosynthesis protein ribD:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124601837|gb|EAY60847.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis C]
gi|134150846|gb|EBA42891.1| bifunctional enzyme riboflavin biosynthesis protein ribD :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis str. Haarlem]
gi|148506664|gb|ABQ74473.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium tuberculosis H37Ra]
gi|148722387|gb|ABR07012.1| bifunctional enzyme riboflavin biosynthesis protein ribD:
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis F11]
gi|224774153|dbj|BAH26959.1| putative hypothetical protein [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319751|gb|ACT24354.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis KZN 1435]
gi|289417131|gb|EFD14371.1| riboflavin biosynthesis protein RibD domain-containing protein
[Mycobacterium tuberculosis T46]
gi|289421283|gb|EFD18484.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis CPHL_A]
gi|289438176|gb|EFD20669.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis KZN 605]
gi|289539799|gb|EFD44377.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis K85]
gi|289544598|gb|EFD48246.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis T17]
gi|289686998|gb|EFD54486.1| bifunctional enzyme riboflavin biosynthesis protein RibD
[Mycobacterium tuberculosis 02_1987]
gi|289691908|gb|EFD59337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis T92]
gi|289695359|gb|EFD62788.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289710347|gb|EFD74363.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mycobacterium tuberculosis GM 1503]
gi|289714362|gb|EFD78374.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|298495934|gb|EFI31228.1| RibD [Mycobacterium tuberculosis 94_M4241A]
gi|308214608|gb|EFO74007.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu001]
gi|308326253|gb|EFP15104.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu002]
gi|308329858|gb|EFP18709.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu003]
gi|308333424|gb|EFP22275.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu004]
gi|308337491|gb|EFP26342.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu005]
gi|308341164|gb|EFP30015.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu006]
gi|308346123|gb|EFP34974.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu007]
gi|308348919|gb|EFP37770.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu008]
gi|308353691|gb|EFP42542.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu009]
gi|308357538|gb|EFP46389.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu010]
gi|308361486|gb|EFP50337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu011]
gi|308365093|gb|EFP53944.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis SUMu012]
gi|323718731|gb|EGB27892.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis CDC1551A]
gi|326904285|gb|EGE51218.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis W-148]
gi|328458020|gb|AEB03443.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium
tuberculosis KZN 4207]
Length = 258
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L++ L RG+ +L EGG + +F+ ++D + L + V+G G +
Sbjct: 177 VLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIVTGPGQVLT 236
Query: 337 NFMCVRRDYFGSD---VCLEYIG 356
C D + Y+
Sbjct: 237 RMRCAHV--LTDDSGYLYTRYVK 257
>gi|330506465|ref|YP_004382893.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
concilii GP-6]
gi|328927273|gb|AEB67075.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta
concilii GP-6]
Length = 220
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 13/219 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + + A+S D I + I+G +V LRA SDAI+VG+GTVLADDP
Sbjct: 1 MNRPFVFINSAMSADGKISSRDRRQIRISGKEDLMRVDELRAASDAIMVGVGTVLADDPG 60
Query: 207 LTCRLNGLQEHSPM--------RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
L + L+E RI+ D + + ++KI+ + + + L
Sbjct: 61 LRVKSRILREKRKDMGQLKEPFRIVADSNARTPANAKILGPGC--MIAVSYSAPEERLDR 118
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
I + DL L+ L RGV L+VEGGA + S I LVD I +Y +
Sbjct: 119 LRSGCEIIKCGTEMVDLPGLMEELYNRGVRRLMVEGGARLNWSLIELGLVDEIYIYIGGL 178
Query: 319 VIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEY 354
+IG PS ++ + L++
Sbjct: 179 IIGGERAPSLVDGPGFRNSFPRLSLQSVQRLDEGLLLQW 217
>gi|91218013|ref|ZP_01254965.1| deoxycytidylate deaminase [Psychroflexus torquis ATCC 700755]
gi|91183871|gb|EAS70262.1| deoxycytidylate deaminase [Psychroflexus torquis ATCC 700755]
Length = 143
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 28/101 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
FD ++ A + + V +IVKD ++I G G P
Sbjct: 8 KFDKAYLRMAREWGKLSHCQRK---QVGAIIVKDRMIISDGF---NGTPSGFNNACEDKE 61
Query: 54 --------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + ++ AT Y+ L PC
Sbjct: 62 GLTKWYVLHAEANAILKVAASTQSSKNATLYINLSPCKECS 102
>gi|89890037|ref|ZP_01201548.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
gi|89518310|gb|EAS20966.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7]
Length = 141
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 31/108 (28%)
Query: 1 MPVSSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M ++ A +++ V LIV+D ++I G G P
Sbjct: 1 MKDQKQHKYDIAYLKMAAEWAKLSHCNRR---QVGALIVRDRMIISDGY---NGTPSGFE 54
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+T+ PC
Sbjct: 55 NFCEDEEGYTKWYVLHAEANAILKVAGSTQSCAGATLYITMSPCKDCS 102
>gi|190893255|ref|YP_001979797.1| purine deaminase [Rhizobium etli CIAT 652]
gi|190698534|gb|ACE92619.1| putative purine deaminase protein [Rhizobium etli CIAT 652]
Length = 158
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ SR + P ++VK+G VI R + + HAE+ +
Sbjct: 2 ENHEPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLV 60
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 61 KLAAQHYDTAFLADCTLYTSTEPCAMCS 88
>gi|149197544|ref|ZP_01874595.1| hypothetical protein LNTAR_01145 [Lentisphaera araneosa HTCC2155]
gi|149139562|gb|EDM27964.1| hypothetical protein LNTAR_01145 [Lentisphaera araneosa HTCC2155]
Length = 151
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
S+D FM+ A + VA +IVKD VI G GGCP
Sbjct: 8 SWDQYFMNIAHVAAERSSCSRRH---VAAVIVKDKRVISTGYNGTPRGVKNCDDGGCPRC 64
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE ++ +A G GA+ Y T PC +
Sbjct: 65 NSDVASGHGLDECLCCHAEENSIVQAACHGISINGASIYTTYSPCLLCAKM 115
>gi|195128985|ref|XP_002008939.1| GI13764 [Drosophila mojavensis]
gi|193920548|gb|EDW19415.1| GI13764 [Drosophila mojavensis]
Length = 189
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP---------- 53
+D FM+ A+ S+ + V +V + ++ G G P
Sbjct: 32 PWDDYFMATAILSSKRSK---DPSTQVGACVVDNHNRIVAIGY---NGFPRNCSDDEFPW 85
Query: 54 -----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G Y TL PC+
Sbjct: 86 SKDEDKNSMKNKYMYVVHAEANAILNSNCTALDGTRLYTTLFPCNEC 132
>gi|75910518|ref|YP_324814.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
ATCC 29413]
gi|75704243|gb|ABA23919.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis
ATCC 29413]
Length = 172
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
D + + L + + GGA + H F+ +D +IL I++G GIP L
Sbjct: 84 YINSDWEDFIKTLRTSNGRDIWLVGGAQLIHFFLKHGFIDELILSIHPIILGS-GIPLIL 142
Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYIG 356
++ +E F + + +
Sbjct: 143 KDPTIETKLQLQDVKSFDTGLVQIFYN 169
>gi|315282387|ref|ZP_07870809.1| ComE operon protein 2 [Listeria marthii FSL S4-120]
gi|313613969|gb|EFR87691.1| ComE operon protein 2 [Listeria marthii FSL S4-120]
Length = 186
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDNAELYVTHFPCLAC 101
>gi|229818708|ref|YP_002880234.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564621|gb|ACQ78472.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 297
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + GVT+L+ G + + + + LVD + L IG G P+ + L +
Sbjct: 205 ALRRMRERLGVTTLVSTAGGGLNGALLRAGLVDELDLVVLPTAIGGAGTPTVFDGPVLPE 264
Query: 337 N-----FMCVRRDYFGSDVC-LEYIGKN 358
V L Y+ +
Sbjct: 265 GATPAALRLRSVRVEDDGVLRLRYLVER 292
>gi|89255310|ref|NP_660001.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CFN 42]
gi|218674568|ref|ZP_03524237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli GR56]
gi|89213264|gb|AAM55014.2| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CFN 42]
gi|327191679|gb|EGE58686.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CNPAF512]
Length = 233
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFM 339
GV L++EGGA F+ + LVD + L + G+ P+ E G
Sbjct: 153 EFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSNTPAIFEGGEDGLAGRARLT 212
Query: 340 CVRRDYFG-SDVCLEYIG 356
+ + G V L Y
Sbjct: 213 FISAEAAGLGSVHLRYRV 230
>gi|89901064|ref|YP_523535.1| CMP/dCMP deaminase [Rhodoferax ferrireducens T118]
gi|89345801|gb|ABD70004.1| CMP/dCMP deaminase, zinc-binding [Rhodoferax ferrireducens T118]
Length = 363
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55
P + D + M AL + G V +++KDG++I G A HA
Sbjct: 12 PPTMTDDQAMQLALTQAGLAALAGEV----PVGAVVLKDGVLIASGRNASIETQDPSAHA 67
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ AL A G +VTLEPC+
Sbjct: 68 EIVALRAAALALGNYRLDGCELFVTLEPCAMC 99
>gi|321249886|ref|XP_003191610.1| hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
gi|317458077|gb|ADV19823.1| Hypothetical protein CGB_A7040W [Cryptococcus gattii WM276]
Length = 198
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 28/192 (14%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ I V + + P +ILDP + L S+I+
Sbjct: 3 MTHQLRAIHDAILIGVHTLVLDDPRLQTNLLPPTHASPPPQPLILDPSLRFPLTSRILNE 62
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------RDLKKLLTILVG 284
P + P + + I + L +IL
Sbjct: 63 WNTKPAMRGQTLKQPWILCGSNVPSERINEVEQAGARVVPVPLDSDGRIPPSSLPSILTS 122
Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
G+ S+++EGG+ V SF++ S+LVD++++ + IGEGG E
Sbjct: 123 LGLRSVMIEGGSRVLSSFLHTLKRDDGSKLVDTVVVTVAPTFIGEGG------EDRGLPA 176
Query: 338 FMCVRRDYFGSD 349
V + G D
Sbjct: 177 LQTVHTETMGKD 188
>gi|148973883|ref|ZP_01811416.1| putative deoxycytidylate deaminase [Vibrionales bacterium SWAT-3]
gi|145965580|gb|EDK30828.1| putative deoxycytidylate deaminase [Vibrionales bacterium SWAT-3]
Length = 147
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 25/145 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYG-G-------- 51
+S + RF A VG S +PS V +I K ++ G Y G
Sbjct: 2 ISKWAKRFYQMA-EL----VGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTD 56
Query: 52 --------CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE A+ A + +VT PC + I
Sbjct: 57 DREMKYLKTLHAEENAILFAKRDLDSCEIWVTHFPCPNCAAKI-IQTGISAVHCPEQSED 115
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR 128
Q G+ VD
Sbjct: 116 FLSRWGDKIKVSQDMFEQAGVQVDW 140
>gi|332376376|gb|AEE63328.1| unknown [Dendroctonus ponderosae]
Length = 222
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 34/102 (33%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------------- 53
FM+ A ++ V IV D +++G G G P
Sbjct: 23 YFMATAFLAAKRSK---DPCSQVGACIVNEDNVIVGIGY---NGMPKNCSDDEFPWSKGS 76
Query: 54 ------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + R T YV L PC+
Sbjct: 77 KSDLDNKYLYVCHAELNAILNKNSVDVRNCTMYVGLFPCNEC 118
>gi|56965577|ref|YP_177311.1| guanine deaminase [Bacillus clausii KSM-K16]
gi|56911823|dbj|BAD66350.1| guanine deaminase [Bacillus clausii KSM-K16]
Length = 156
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQAL 60
+ +++ + + + A +IV +G +IG+G + HAEV A+
Sbjct: 2 DHSMYLAKTIHLAAESIQSGGG--PFAAIIVDPNGAIIGQGTNSVTNDNDPTAHAEVVAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A + G T Y + EPC
Sbjct: 60 RDACNTINDFQLEGCTLYTSCEPCPMC 86
>gi|83319549|ref|YP_424377.1| deoxycytidylate deaminase [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|83283435|gb|ABC01367.1| probable deoxycytidylate deaminase [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 153
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC-------------- 52
FM A + N V ++V + ++ G +
Sbjct: 5 HYFMLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDDFPWSKTNED 61
Query: 53 ---------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + YVTL PC+
Sbjct: 62 WLENKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNEC 100
>gi|15675651|ref|NP_269825.1| putative DNA-binding late competence protein [Streptococcus
pyogenes M1 GAS]
gi|19746757|ref|NP_607893.1| late competence protein [Streptococcus pyogenes MGAS8232]
gi|21911111|ref|NP_665379.1| putative late competence protein required for DNA binding
[Streptococcus pyogenes MGAS315]
gi|28895204|ref|NP_801554.1| late competence protein required for DNA binding [Streptococcus
pyogenes SSI-1]
gi|71911361|ref|YP_282911.1| comE operon protein 2 [Streptococcus pyogenes MGAS5005]
gi|139473178|ref|YP_001127893.1| cytidine and deoxycytidylate deaminase [Streptococcus pyogenes str.
Manfredo]
gi|209559918|ref|YP_002286390.1| Putative late competence protein required for DNA binding
[Streptococcus pyogenes NZ131]
gi|13622863|gb|AAK34546.1| putative late competence protein required for DNA binding
[Streptococcus pyogenes M1 GAS]
gi|19748988|gb|AAL98392.1| putative late competence protein [Streptococcus pyogenes MGAS8232]
gi|21905321|gb|AAM80182.1| putative late competence protein required for DNA binding
[Streptococcus pyogenes MGAS315]
gi|28810450|dbj|BAC63387.1| putative late competence protein required for DNA binding
[Streptococcus pyogenes SSI-1]
gi|71854143|gb|AAZ52166.1| comE operon protein 2 [Streptococcus pyogenes MGAS5005]
gi|134271424|emb|CAM29644.1| putative cytidine and deoxycytidylate deaminase [Streptococcus
pyogenes str. Manfredo]
gi|209541119|gb|ACI61695.1| Putative late competence protein required for DNA binding
[Streptococcus pyogenes NZ131]
Length = 153
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 102
>gi|319948568|ref|ZP_08022697.1| cytidine and deoxycytidylate deaminase family protein [Dietzia
cinnamea P4]
gi|319437767|gb|EFV92758.1| cytidine and deoxycytidylate deaminase family protein [Dietzia
cinnamea P4]
Length = 143
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEA-- 63
M AL + G + V +++ DG + G P HAEV AL EA
Sbjct: 1 MRRALAVA---AGTPPEDVPVGAVVIGPDGTELAAATNRRETDGDPFAHAEVLALREAAR 57
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 58 VLGDGWRLEDCTLVVTLEPCTMC 80
>gi|218516430|ref|ZP_03513270.1| putative purine deaminase protein [Rhizobium etli 8C-3]
Length = 158
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ SR + P ++VK+G VI R + + HAE+ +
Sbjct: 2 ENHEPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLV 60
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 61 KLAAQHYDTAFLADCTLYTSTEPCAMCS 88
>gi|158319799|ref|YP_001512306.1| deaminase-reductase domain-containing protein [Alkaliphilus
oremlandii OhILAs]
gi|158139998|gb|ABW18310.1| bifunctional deaminase-reductase domain protein [Alkaliphilus
oremlandii OhILAs]
Length = 175
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ + ++ + +++ + +D+ L + ++ + GG+
Sbjct: 56 YDWLMAHEDVFPYKDKACYIFSRAPREDTEYVTFVNKDIVSFSKELKNKNGKNIWLMGGS 115
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ FI +LVD +I+ + +++G GIP E + F V L Y
Sbjct: 116 ELISDFILEKLVDEVIVTIAPVLLGS-GIPLFRENNVQTL-LRLNSINRFNQFVELRYEV 173
>gi|296118010|ref|ZP_06836592.1| tRNA-specific adenosine deaminase [Corynebacterium ammoniagenes
DSM 20306]
gi|295968896|gb|EFG82139.1| tRNA-specific adenosine deaminase [Corynebacterium ammoniagenes
DSM 20306]
Length = 151
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 11 MSAALRFSRWHVGLTST--NPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL + T+ + V +I DG + GV HAEV+A+ A
Sbjct: 4 MQRALDVAA-----TTPAGDVPVGAVIYGPDGAELATGVNRREALADPTAHAEVEAIRAA 58
Query: 64 ------GEEARGATAYVTLEPC 79
G VTLEPC
Sbjct: 59 VREYGDSWRLEGCELVVTLEPC 80
>gi|221066605|ref|ZP_03542710.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
gi|220711628|gb|EED66996.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1]
Length = 146
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALE----- 61
M A+ + + ++ + V+ GV + HAE+QA+
Sbjct: 1 MRLAVNLAHANRLQGGR--PFGAVLAQGNEVVATGVNEIIASHDPSTHAEMQAIRAGTQQ 58
Query: 62 EAGEEARGATAYVTLEPCSHY 82
A G + Y + PC
Sbjct: 59 RANPSLAGLSIYASGHPCPMC 79
>gi|119481501|ref|XP_001260779.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Neosartorya fischeri NRRL 181]
gi|119408933|gb|EAW18882.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Neosartorya fischeri NRRL 181]
Length = 215
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVT-AYG 50
M S ++ L + TN V ++V KD ++ G T
Sbjct: 1 MTASP-HLDYLRQCLSLAERSPPR-PTNFRVGAILVSHKDGDLECKDDRILSTGYTMELA 58
Query: 51 GCPHAEVQALEE----------------AGEEARGATAYVTLEPC 79
G HAE L E R YVT+EPC
Sbjct: 59 GNTHAEQCCLSNYAAVHSVPEDKVAEVLPSEPGRKLVMYVTMEPC 103
>gi|220927719|ref|YP_002504628.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
gi|219998047|gb|ACL74648.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10]
Length = 145
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 33/108 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + T + +IVK+ ++ G
Sbjct: 4 SWDEYFMQI-VEL--IKTRSTCLRRQIGAVIVKEKRILASGYNGAPVGCKHCSEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT YVT +PC
Sbjct: 61 KLNIPSGQRHELCRAIHAEQNAIVQAAYSGTSVSGATLYVTNQPCVLC 108
>gi|57239296|ref|YP_180432.1| putative deaminase [Ehrlichia ruminantium str. Welgevonden]
gi|58579261|ref|YP_197473.1| hypothetical protein ERWE_CDS_05970 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161375|emb|CAH58299.1| putative deaminase [Ehrlichia ruminantium str. Welgevonden]
gi|58417887|emb|CAI27091.1| Conserved hypothetical protein (putative cytidine deaminase)
[Ehrlichia ruminantium str. Welgevonden]
Length = 145
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 19/125 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
+M A+ ++ V +IV +G VI + HAE+ ++ A
Sbjct: 6 YMRLAIGKAQEDCLEV----PVGAVIVYNGKVISCQNNSNVKNCDPTAHAEILSIRHACI 61
Query: 65 ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
YVTLEPC CAQ I IRR+ + G +
Sbjct: 62 VLSTHILNQCDMYVTLEPC------AMCAQAISFARIRRLYFGAYNKKYGGVENGARVFH 115
Query: 121 QKGII 125
+
Sbjct: 116 FCHSV 120
>gi|323699085|ref|ZP_08110997.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio sp. ND132]
gi|323459017|gb|EGB14882.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio desulfuricans
ND132]
Length = 152
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM A ++ T T +V + V+D ++ G
Sbjct: 9 EYFMRIAHLVAQRS---TCTRRAVGAIAVRDKRILATGYNGVPTNIAHCDVVGCLRDQLG 65
Query: 47 ------TAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRS 85
HAE + +A +G Y T +PC +
Sbjct: 66 IPSGERHELCRGLHAEQNVIIQAATNNLDLKGCDIYCTTKPCILCTKM 113
>gi|302557648|ref|ZP_07309990.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
biosynthesis protein RibD) [Streptomyces griseoflavus
Tu4000]
gi|302475266|gb|EFL38359.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin
biosynthesis protein RibD) [Streptomyces griseoflavus
Tu4000]
Length = 139
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-IGEGGIPSPLEEGYLEK 336
++ L G T LL EGG + + + ++D + L S ++ G+ + L +
Sbjct: 59 VVRALAELGHTRLLTEGGPRLLGQLVAAGVLDELCLTVSPMLAAGDAQRIAGGPSVTLPR 118
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
F + Y
Sbjct: 119 RFALESMLEEDGFLFTRYRR 138
>gi|301058427|ref|ZP_07199448.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
proteobacterium NaphS2]
gi|300447483|gb|EFK11227.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
proteobacterium NaphS2]
Length = 159
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEE 62
M+ AL ++ G V ++ G ++ R HAE+ A+ +
Sbjct: 1 MMAQALLEAKKAYSKGEV----PVGAVLADAQGYILSRAHNQPISLCDPTAHAEILAIRK 56
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A T+EPC
Sbjct: 57 ACSICGNYRLTRCLLVATIEPCIMC 81
>gi|229175001|ref|ZP_04302520.1| ComE operon protein 2 [Bacillus cereus MM3]
gi|228608462|gb|EEK65765.1| ComE operon protein 2 [Bacillus cereus MM3]
Length = 188
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 104
>gi|118479492|ref|YP_896643.1| comE operon protein 2 [Bacillus thuringiensis str. Al Hakam]
gi|228916958|ref|ZP_04080519.1| ComE operon protein 2 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228935647|ref|ZP_04098461.1| ComE operon protein 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948040|ref|ZP_04110325.1| ComE operon protein 2 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228987579|ref|ZP_04147696.1| ComE operon protein 2 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229093396|ref|ZP_04224501.1| ComE operon protein 2 [Bacillus cereus Rock3-42]
gi|229141064|ref|ZP_04269606.1| ComE operon protein 2 [Bacillus cereus BDRD-ST26]
gi|229157941|ref|ZP_04286013.1| ComE operon protein 2 [Bacillus cereus ATCC 4342]
gi|229186566|ref|ZP_04313727.1| ComE operon protein 2 [Bacillus cereus BGSC 6E1]
gi|229198454|ref|ZP_04325158.1| ComE operon protein 2 [Bacillus cereus m1293]
gi|118418717|gb|ABK87136.1| comE operon protein 2 [Bacillus thuringiensis str. Al Hakam]
gi|228584957|gb|EEK43071.1| ComE operon protein 2 [Bacillus cereus m1293]
gi|228596825|gb|EEK54484.1| ComE operon protein 2 [Bacillus cereus BGSC 6E1]
gi|228625501|gb|EEK82256.1| ComE operon protein 2 [Bacillus cereus ATCC 4342]
gi|228642342|gb|EEK98631.1| ComE operon protein 2 [Bacillus cereus BDRD-ST26]
gi|228689990|gb|EEL43793.1| ComE operon protein 2 [Bacillus cereus Rock3-42]
gi|228772153|gb|EEM20602.1| ComE operon protein 2 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228811626|gb|EEM57962.1| ComE operon protein 2 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824007|gb|EEM69825.1| ComE operon protein 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228842679|gb|EEM87766.1| ComE operon protein 2 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 188
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 104
>gi|300120277|emb|CBK19831.2| unnamed protein product [Blastocystis hominis]
Length = 155
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 20/89 (22%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
M +S D +++ A + + C+ VKD HAE+ A+
Sbjct: 1 MNLSEIDDKYLELAYEEANVAFEEREV--PIGCVFVKDN-----------ATLHAEMVAI 47
Query: 61 -EEAGEE------ARGATAYVTLEPCSHY 82
G G+T YVT+EPC
Sbjct: 48 SRTLGANGNDPTIFEGSTLYVTIEPCIMC 76
>gi|124009330|ref|ZP_01694009.1| cytosine deaminase [Microscilla marina ATCC 23134]
gi|123985107|gb|EAY25051.1| cytosine deaminase [Microscilla marina ATCC 23134]
Length = 144
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG 64
+FM AA+ + + +++++G +I +G H E+ L AG
Sbjct: 3 KFMEAAIAQAEKSYNEGGI--PIGSVLMRNGEIIAQGHNKRVQEANPILHGEMDCLLNAG 60
Query: 65 E--EARGATAYVTLEPCSHY 82
+ Y TL PC
Sbjct: 61 RIGSYKDTVIYSTLMPCYMC 80
>gi|57530125|ref|NP_001006444.1| deoxycytidylate deaminase [Gallus gallus]
gi|53133480|emb|CAG32069.1| hypothetical protein RCJMB04_17c11 [Gallus gallus]
Length = 190
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 33/153 (21%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP------------ 53
FM+ A ++ + V IV + ++G G GC
Sbjct: 29 EYFMAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWTRAAAH 85
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ A+ + + +G + YV L PC + I + +
Sbjct: 86 SLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPC-----NECAKLIIQAGIKEVIFM 140
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
D + GI+ K
Sbjct: 141 SDKYHDSIEMTAARRMFDLAGIVYREFKPKCNK 173
>gi|33866732|ref|NP_898291.1| putative riboflavin-specific deaminase [Synechococcus sp. WH 8102]
gi|33639333|emb|CAE08715.1| putative riboflavin-specific deaminase [Synechococcus sp. WH 8102]
Length = 223
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 25/227 (11%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+R + L +A+S D + A G+ + G + + A +DA L+G GT+ A
Sbjct: 1 MQGERPTVRLVLAISLDGRLAPAEGGAAQLGGDGDRIALEQALAWADACLIGAGTLRAHQ 60
Query: 205 PELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
R L + P ++ +S + + L ++
Sbjct: 61 CTCLIRNQTLVDQRLAAGRPAQPAAVVASRSGNVSSSWRFFQQPLQRWLLA--------- 111
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
A + + + L L G+ L++ GGA +A + VD + L
Sbjct: 112 -PAPMEWGFERWFPLAESWTEQLVGLGSAGIQRLVLLGGAHLAADLLAGDCVDELQLTVV 170
Query: 317 QIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFG-SDVCLEYIG 356
V+G G P L + + V + G + L Y
Sbjct: 171 PRVLGGGNTWLPTTSPGLPYALSQAEAWRAVGAEPLGSGEWLLRYRR 217
>gi|229028448|ref|ZP_04184570.1| Enzyme [Bacillus cereus AH1271]
gi|228732897|gb|EEL83757.1| Enzyme [Bacillus cereus AH1271]
Length = 179
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D I+ + ++G G+P ++ E N FG
Sbjct: 114 IWMVGGGSLLSEFFKNNLIDEYIVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|171676245|ref|XP_001903076.1| hypothetical protein [Podospora anserina S mat+]
gi|170936188|emb|CAP60848.1| unnamed protein product [Podospora anserina S mat+]
Length = 685
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
+R + T+ P V C++V +G VI RG+ + G HAE+ A+
Sbjct: 332 QARLAL-RTNETP-VGCVLVHNGRVIARGMNATNVSRNGTRHAELMAI 377
>gi|306834244|ref|ZP_07467363.1| competence protein ComEB [Streptococcus bovis ATCC 700338]
gi|304423593|gb|EFM26740.1| competence protein ComEB [Streptococcus bovis ATCC 700338]
Length = 155
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 11 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSETDNCNEVGHKMEDGHC 67
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G +G YVT PC +
Sbjct: 68 IRTVHAEMNALIQCAKEGISTKGTEIYVTHFPCINC 103
>gi|149176588|ref|ZP_01855200.1| hypothetical protein PM8797T_19764 [Planctomyces maris DSM 8797]
gi|148844467|gb|EDL58818.1| hypothetical protein PM8797T_19764 [Planctomyces maris DSM 8797]
Length = 180
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L+ L RG + V+GG + SF+ + L+D +I+ R I+IG GIP E +
Sbjct: 102 ELIEQLAKRGFQHVYVDGGKTI-QSFLRAGLIDELIITRIPILIGS-GIPLF-GEADADI 158
Query: 337 NFMCVRRDYF 346
+ F
Sbjct: 159 QLKHLETHTF 168
>gi|328545044|ref|YP_004305153.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [polymorphum gilvum SL003B-26A1]
gi|326414788|gb|ADZ71851.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Polymorphum gilvum SL003B-26A1]
Length = 176
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V DG V+ HAE+ + A + G YVTLEPC
Sbjct: 52 PVGAVLVCDGRVVAADGNRTLELNDPTAHAEMLVIRAACAALGSQRLSGCDLYVTLEPCP 111
Query: 81 HY 82
Sbjct: 112 MC 113
>gi|229031977|ref|ZP_04187962.1| ComE operon protein 2 [Bacillus cereus AH1271]
gi|228729332|gb|EEL80324.1| ComE operon protein 2 [Bacillus cereus AH1271]
Length = 188
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGG------- 51
M S+D FM+ + S T T +V IV+D +I G GG
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVHCIDDG 60
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + A YVT PC
Sbjct: 61 CYVIDNHCVRTIHAEMNALLQCAKFGVKTEEAEIYVTHFPCLQC 104
>gi|331001151|ref|ZP_08324780.1| hypothetical protein HMPREF9439_02436 [Parasutterella
excrementihominis YIT 11859]
gi|329569272|gb|EGG51058.1| hypothetical protein HMPREF9439_02436 [Parasutterella
excrementihominis YIT 11859]
Length = 229
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----E 331
L + V +L+EGGA +F+ LVD + + + GE G PS +E E
Sbjct: 142 ALKHLEQDFNVKHMLLEGGAITCGNFLQMGLVDELSMIVYPGLDGESGHPSVIECQGVVE 201
Query: 332 GYLEKNFMCVRRDYFGSD-VCLEY 354
+ + + GS V L Y
Sbjct: 202 PLKKNRLELIDCETVGSGYVWLRY 225
>gi|183602639|ref|ZP_02964003.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
animalis subsp. lactis HN019]
gi|241191605|ref|YP_002968999.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241197010|ref|YP_002970565.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|183218057|gb|EDT88704.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
animalis subsp. lactis HN019]
gi|240249997|gb|ACS46937.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251564|gb|ACS48503.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794597|gb|ADG34132.1| Cytosine/adenosine deaminase [Bifidobacterium animalis subsp.
lactis V9]
Length = 169
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R ++ + V +++ G VIGRG HAE+ A+ EA
Sbjct: 25 MGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMREAAA 82
Query: 66 -----EARGATAYVTLEPCSHYGRSP 86
T VTLEPC +
Sbjct: 83 VRGNWNLADCTLVVTLEPCPMCAGAC 108
>gi|134096850|ref|YP_001102511.1| CMP/dCMP deaminase, zinc-binding [Saccharopolyspora erythraea
NRRL 2338]
gi|291005105|ref|ZP_06563078.1| CMP/dCMP deaminase, zinc-binding protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133909473|emb|CAL99585.1| CMP/dCMP deaminase, zinc-binding [Saccharopolyspora erythraea
NRRL 2338]
Length = 155
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+ D + AAL + T P + ++ DG V+ R HAE+ A
Sbjct: 6 ARDTELVRAALEVA-PGALSTGDVP-IGAVVAGPDGRVLARDHNRREALHDPTAHAEILA 63
Query: 60 LEEA------GEEARGATAYVTLEPCSHY 82
L A G G T VT+EPC+
Sbjct: 64 LRAAAGVLGDGWRLEGCTLAVTVEPCTMC 92
>gi|293364019|ref|ZP_06610755.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mycoplasma alligatoris A21JP2]
gi|292552509|gb|EFF41283.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mycoplasma alligatoris A21JP2]
Length = 158
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 26/104 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP------ 53
++D F+S A + + V I+ D VIG G G
Sbjct: 3 KRINWDTYFISLAKISALRSK---DPSTQVGACIINDEKKVIGLGYNGMPNGNDIDFPWG 59
Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAEV A+ A + +GA Y TL PC +
Sbjct: 60 RDSKIAKETKYPYVVHAEVNAILNAIVQPKGAIIYTTLYPCINC 103
>gi|195378584|ref|XP_002048063.1| GJ13755 [Drosophila virilis]
gi|194155221|gb|EDW70405.1| GJ13755 [Drosophila virilis]
Length = 193
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 31/105 (29%), Gaps = 34/105 (32%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+D FM+ AL SR + V IV K ++ G G P
Sbjct: 33 WDDYFMATALLSSRRSK---DPSTQVGACIVDKHKRIVAIGY---NGFPRDCSDDVFSWS 86
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G Y TL PC+
Sbjct: 87 KDNSDPLENKNMYVVHAEANAILNSNSRSLDGTRLYTTLFPCNEC 131
>gi|47207020|emb|CAF91477.1| unnamed protein product [Tetraodon nigroviridis]
Length = 161
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 21/89 (23%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE-- 62
M A ++ + G V CL+V + V+GRG HAE+ AL+E
Sbjct: 1 MDEAFDMAKDALQNGEV----PVGCLMVYNNEVVGRGRNEVNETKNATRHAEMVALDELL 56
Query: 63 ---------AGEEARGATAYVTLEPCSHY 82
+ +R YVT+EPC
Sbjct: 57 NWCHHSNLDVSKVSRKTVLYVTVEPCVMC 85
>gi|313156981|gb|EFR56413.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Alistipes sp. HGB5]
Length = 358
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-TAYGGCPHAEVQALE 61
S+ D RF+ A+ R ++ V ++V DG + G HAE +A+
Sbjct: 213 SAADLRFLKQAVDEGRKCTPSATS-YCVGAVVVAADGRIFA-GHTHETSPTHHAEQEAIA 270
Query: 62 EAGEE---ARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+A RGA Y ++EPCS C Q +++ G R V + +PD V RG
Sbjct: 271 KALAAGAPLRGAAMYSSMEPCSQRASEPESCTQLLLKYGFARAVFALYEPDCFVCCRGAL 330
Query: 118 WLSQKGIIVDRMM 130
L + G+ V
Sbjct: 331 TLREAGVDVRVYP 343
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-IGEGGIPSPLEEGYLEK 336
++T L RGV L+VEGGAAV F+ + D++ L + + +G G +
Sbjct: 132 IVTQLEKRGVERLMVEGGAAVLRMFLGEGMADTLRLAVNPQLRLGAAGGAEF---RFTPP 188
Query: 337 NFMCVRRDYFGSDVCLEYI 355
R+ G Y
Sbjct: 189 QGTPQTRENLGGMEVTTYT 207
>gi|297543681|ref|YP_003675983.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296841456|gb|ADH59972.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 147
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 4 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEETGCLRD 60
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV PC +
Sbjct: 61 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVNASPCVMCAKM 111
>gi|190894029|ref|YP_001984323.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CIAT 652]
gi|190699690|gb|ACE93773.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
[Rhizobium etli CIAT 652]
Length = 233
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFM 339
GV L++EGGA F+ + LVD + L + G+ P+ E G
Sbjct: 153 EFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSSTPAIFEGGEDGLDGRARLT 212
Query: 340 CVRRDYFG-SDVCLEYIG 356
+ + G V L Y
Sbjct: 213 FISAEAAGLGSVHLRYRV 230
>gi|24380210|ref|NP_722165.1| putative deoxycytidylate deaminase [Streptococcus mutans UA159]
gi|24378216|gb|AAN59471.1|AE015011_10 putative deoxycytidylate deaminase [Streptococcus mutans UA159]
Length = 150
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
FM+ A S+ + V ++VK+ +I G
Sbjct: 10 YFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G A YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINC 102
>gi|327192975|gb|EGE59890.1| putative purine deaminase protein [Rhizobium etli CNPAF512]
Length = 158
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ SR + P ++VK+G VI R + + HAE+ +
Sbjct: 2 ENHEPFLREAIALSRSAIEQGGGEP-FGSVLVKNGEVILRAENSVFSGHDMTNHAEMNLV 60
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 61 KLAAQHYDTAFLADCTLYTSTEPCAMCS 88
>gi|291521867|emb|CBK80160.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
Length = 175
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
DA FM A+R S+ V N ++VK+G ++ T + H E + E
Sbjct: 24 DASFMREAIRLSQLAVE--HGNEPFGAVLVKNGEIVFTNENQIYTRHDPTFHGEAGLIRE 81
Query: 63 AGEE-----ARGATAYVTLEPCSHYG 83
+ T Y + EPC
Sbjct: 82 FCAKTSITDLHDYTLYSSCEPCFMCS 107
>gi|290962921|ref|YP_003494103.1| guanine deaminase [Streptomyces scabiei 87.22]
gi|260652447|emb|CBG75580.1| putative guanine deaminase [Streptomyces scabiei 87.22]
Length = 226
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 7 DARFMSAALRFSRWHVGLTSTNP--SVACLIV--KDGIVIGRGVTAYGGCP--HAEVQAL 60
RFM A+ +R NP +IV + G V G GV + P H E A+
Sbjct: 65 HERFMRLAVEQARR-------NPAWPFGAVIVATRTGRVPGSGVNSGADSPLLHGEAVAM 117
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ T Y T EPCS
Sbjct: 118 NDYVRRHGNRGWAATTLYTTGEPCSMC 144
>gi|238855364|ref|ZP_04645676.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 269-3]
gi|260664920|ref|ZP_05865771.1| tRNA-adenosine deaminase [Lactobacillus jensenii SJ-7A-US]
gi|282934594|ref|ZP_06339841.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
gi|238832025|gb|EEQ24350.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 269-3]
gi|260561403|gb|EEX27376.1| tRNA-adenosine deaminase [Lactobacillus jensenii SJ-7A-US]
gi|281301346|gb|EFA93643.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
Length = 176
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG VIGRG HAE+ A+ EA + + +VTLEPC
Sbjct: 28 PIGAIVVAPDGQVIGRGYNRRELDNIATHHAEILAINEACKNLNSWRLIDCSLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|50954049|ref|YP_061337.1| cytosine/adenosine deaminase [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950531|gb|AAT88232.1| cytosine/adenosine deaminase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 143
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 30 SVACLIVKDG-IVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
VA L+V G VIG G HAEV AL EA G T VTLEPC
Sbjct: 18 PVAALVVDAGERVIGTGRNERELLRDPTAHAEVLALREAASSRADWNLEGCTLVVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 AMC 80
>gi|168705456|ref|ZP_02737733.1| cytidine/deoxycytidylate deaminase family protein [Gemmata
obscuriglobus UQM 2246]
Length = 167
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAY----GGCPHAEVQA 59
F M AL + V + V LIV + VIG+ HAE+ A
Sbjct: 14 PFHVHHMEMALDEA--AVAASEDEVPVGALIVHPELGVIGQAHNMRERLNDPTAHAEMIA 71
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
+ +A YVTLEPC
Sbjct: 72 ITQAATALKSWRLEKCILYVTLEPCPMC 99
>gi|291548625|emb|CBL24887.1| Deoxycytidylate deaminase [Ruminococcus torques L2-14]
Length = 162
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A+ N V C IV +D ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGLPMGCSDDEFPWARE 66
Query: 47 ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 67 GEDPLETKYVYTTHSELNAILNYNGGSLAGAKLYVSLFPCNEC 109
>gi|290559824|gb|EFD93148.1| bifunctional deaminase-reductase domain protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 171
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ KK++ I+ RG +V GG A +F+ LV+ I L I+ G+ GIP E
Sbjct: 88 NPKKIIEIVEKRGYKEAMV-GGGVTAANFLKEGLVNEIFLDIEPIIFGK-GIPVFAYEK- 144
Query: 334 LEKNFMCVRRDYFGSD-VCLEY 354
EK + ++ + L Y
Sbjct: 145 FEKKLKLIDTKRISNNEIRLHY 166
>gi|290558813|gb|EFD92206.1| bifunctional deaminase-reductase domain protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 171
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ KK++ I+ RG +V GG A +F+ LV+ I L I+ G+ GIP E
Sbjct: 88 NPKKIIEIVEKRGYKEAMV-GGGVTAANFLKEGLVNEIFLDIEPIIFGK-GIPVFAYEK- 144
Query: 334 LEKNFMCVRRDYFGSD-VCLEY 354
EK + ++ + L Y
Sbjct: 145 FEKKLKLIDTKRISNNEIRLHY 166
>gi|254499275|ref|ZP_05111951.1| deaminase [Legionella drancourtii LLAP12]
gi|254351519|gb|EET10378.1| deaminase [Legionella drancourtii LLAP12]
Length = 143
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 11 MSAALRFS--RWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEA 63
M A + + G V ++V + G ++G ++ HAEV+ + +A
Sbjct: 1 MQQAYEQAFLAQNEGEV----PVGAVLVSNEGELLGASRNAVQNSHDPSDHAEVRVIRQA 56
Query: 64 GEEARG-----ATAYVTLEPCSHY 82
++ + T YVTLEPC
Sbjct: 57 AQQLKNHRLLDTTLYVTLEPCPMC 80
>gi|237845333|ref|XP_002371964.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
gi|211969628|gb|EEB04824.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49]
Length = 180
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 44/110 (40%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
S+D FM + T +N V ++ + VI G G P
Sbjct: 22 SWDTYFMRLTF-LA-----STRSNCMKRRVGAIVARGNRVIATGY---NGTPSQAANCNA 72
Query: 54 -----------------------HAEVQALEEAG-EEARGATAYVTLEPC 79
HAE AL EAG + A T YVT PC
Sbjct: 73 GGCARCNDPSVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPC 122
>gi|326389256|ref|ZP_08210824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
200]
gi|325994619|gb|EGD53043.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW
200]
Length = 147
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 4 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEETGCLRE 60
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV+ PC +
Sbjct: 61 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVSASPCVICAKM 111
>gi|307265640|ref|ZP_07547193.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919284|gb|EFN49505.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 147
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 4 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEDTGCLRE 60
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV+ PC +
Sbjct: 61 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVSASPCVICAKM 111
>gi|257052125|ref|YP_003129958.1| CMP/dCMP deaminase zinc-binding [Halorhabdus utahensis DSM 12940]
gi|256690888|gb|ACV11225.1| CMP/dCMP deaminase zinc-binding [Halorhabdus utahensis DSM 12940]
Length = 155
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63
M A+ T +V L+VK+G ++ G H+E++ + EA
Sbjct: 18 EELMRTAISLG------TDPE-AVGALLVKNGDIVASGTGAIFERPDATAHSEIEVIREA 70
Query: 64 G-----EEARGATAYVTLEPCSHYGRSPP 87
E G Y T EPC +
Sbjct: 71 CQRLDSERLDGCWLYSTHEPCPMCTAACC 99
>gi|167038484|ref|YP_001666062.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038773|ref|YP_001661758.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514]
gi|166853013|gb|ABY91422.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514]
gi|166857318|gb|ABY95726.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 149
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 4 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEETGCLRE 60
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV+ PC +
Sbjct: 61 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVSASPCVICAKM 111
>gi|269216184|ref|ZP_06160038.1| cytidine/deoxycytidylate deaminase family protein [Slackia exigua
ATCC 700122]
gi|269130443|gb|EEZ61521.1| cytidine/deoxycytidylate deaminase family protein [Slackia exigua
ATCC 700122]
Length = 139
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 33/105 (31%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------------ 46
M A S T +V L+VKD ++ G
Sbjct: 1 MHLAFEVSGRA---TCLRRAVGALLVKDRRILATGYNGVPTGLRHCEEVGCLRERLGVPS 57
Query: 47 ---TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +G++ Y+T +PCS +
Sbjct: 58 GQRHEICRGLHAEQNAIIQAARHGINIQGSSIYITTQPCSVCTKM 102
>gi|158428667|pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
gi|158428668|pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
gi|158428669|pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
gi|158428670|pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
gi|158428671|pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------------- 51
FM+ A S+ + V ++VK+ +I G
Sbjct: 44 YFMANAELISKRSTCNRA---YVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHC 100
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G A YVT PC +
Sbjct: 101 IRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINC 136
>gi|69247261|ref|ZP_00604279.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Enterococcus faecium DO]
gi|257878126|ref|ZP_05657779.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
gi|257881089|ref|ZP_05660742.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
gi|257884751|ref|ZP_05664404.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
gi|257889675|ref|ZP_05669328.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
gi|257892388|ref|ZP_05672041.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
gi|258616373|ref|ZP_05714143.1| comE operon protein 2, putative [Enterococcus faecium DO]
gi|260559174|ref|ZP_05831360.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
gi|261207708|ref|ZP_05922393.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
gi|289566284|ref|ZP_06446715.1| ComE operon protein 2 [Enterococcus faecium D344SRF]
gi|293552881|ref|ZP_06673539.1| ComE operon protein 2 [Enterococcus faecium E1039]
gi|293563910|ref|ZP_06678333.1| ComE operon protein 2 [Enterococcus faecium E1162]
gi|293569408|ref|ZP_06680705.1| dCMP deaminase [Enterococcus faecium E1071]
gi|294615862|ref|ZP_06695704.1| ComE operon protein 2 [Enterococcus faecium E1636]
gi|294617297|ref|ZP_06696938.1| putative competence protein [Enterococcus faecium E1679]
gi|294623507|ref|ZP_06702355.1| ComE operon protein 2 [Enterococcus faecium U0317]
gi|314937547|ref|ZP_07844875.1| ComE operon protein 2 [Enterococcus faecium TX0133a04]
gi|314941461|ref|ZP_07848350.1| ComE operon protein 2 [Enterococcus faecium TX0133C]
gi|314949641|ref|ZP_07852962.1| ComE operon protein 2 [Enterococcus faecium TX0082]
gi|314951823|ref|ZP_07854861.1| ComE operon protein 2 [Enterococcus faecium TX0133A]
gi|314992768|ref|ZP_07858172.1| ComE operon protein 2 [Enterococcus faecium TX0133B]
gi|314996525|ref|ZP_07861563.1| ComE operon protein 2 [Enterococcus faecium TX0133a01]
gi|68194934|gb|EAN09403.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Enterococcus faecium DO]
gi|257812354|gb|EEV41112.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933]
gi|257816747|gb|EEV44075.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502]
gi|257820589|gb|EEV47737.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501]
gi|257826035|gb|EEV52661.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410]
gi|257828767|gb|EEV55374.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408]
gi|260074931|gb|EEW63247.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68]
gi|260078091|gb|EEW65797.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6]
gi|289161924|gb|EFD09793.1| ComE operon protein 2 [Enterococcus faecium D344SRF]
gi|291587934|gb|EFF19785.1| dCMP deaminase [Enterococcus faecium E1071]
gi|291591248|gb|EFF22915.1| ComE operon protein 2 [Enterococcus faecium E1636]
gi|291596454|gb|EFF27706.1| putative competence protein [Enterococcus faecium E1679]
gi|291597101|gb|EFF28304.1| ComE operon protein 2 [Enterococcus faecium U0317]
gi|291603015|gb|EFF33209.1| ComE operon protein 2 [Enterococcus faecium E1039]
gi|291604143|gb|EFF33654.1| ComE operon protein 2 [Enterococcus faecium E1162]
gi|313589311|gb|EFR68156.1| ComE operon protein 2 [Enterococcus faecium TX0133a01]
gi|313592701|gb|EFR71546.1| ComE operon protein 2 [Enterococcus faecium TX0133B]
gi|313595997|gb|EFR74842.1| ComE operon protein 2 [Enterococcus faecium TX0133A]
gi|313599713|gb|EFR78556.1| ComE operon protein 2 [Enterococcus faecium TX0133C]
gi|313643090|gb|EFS07670.1| ComE operon protein 2 [Enterococcus faecium TX0133a04]
gi|313643980|gb|EFS08560.1| ComE operon protein 2 [Enterococcus faecium TX0082]
Length = 179
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FM+ A+ S V +V++ +I G
Sbjct: 26 PWDQYFMAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYVV 82
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G+ YVT PC
Sbjct: 83 DGHCLRTIHAEMNALLQCAKLGIPTEGSEIYVTHFPCLAC 122
>gi|289577394|ref|YP_003476021.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
italicus Ab9]
gi|289527107|gb|ADD01459.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter
italicus Ab9]
Length = 147
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 4 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEETGCLRD 60
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV PC +
Sbjct: 61 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVNASPCVMCAKM 111
>gi|149200864|ref|ZP_01877839.1| hypothetical protein RTM1035_14602 [Roseovarius sp. TM1035]
gi|149145197|gb|EDM33223.1| hypothetical protein RTM1035_14602 [Roseovarius sp. TM1035]
Length = 153
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 20/108 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCP 53
M S +M AL +R G V +IV G + R
Sbjct: 1 MTFRS----YMDIALDEARAAAARGEV----PVGAVIVTPSGAIAARAGNRTRELSDPTA 52
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE+ A+ A E G YVTLEPC+ + +
Sbjct: 53 HAEILAIRAACAALGSERLPGHDLYVTLEPCAMCASAIAATRIARLYY 100
>gi|73667189|ref|YP_303205.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
canis str. Jake]
gi|72394330|gb|AAZ68607.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Ehrlichia
canis str. Jake]
Length = 139
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 19/124 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M A+ ++ + V +IV + VI + HAE+ A+ EA +
Sbjct: 1 MKLAISKAQEDLSEV----PVGAVIVYNDEVISSSNNSNIQNTDPTAHAEILAIREACKI 56
Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
YVTLEPC CAQ I +RR+ + G +
Sbjct: 57 LSTQILDQCDIYVTLEPC------AMCAQAISFAKLRRLYFGAYNKKYGAIENGARIFQF 110
Query: 122 KGII 125
+
Sbjct: 111 CHHV 114
>gi|313623713|gb|EFR93860.1| ComE operon protein 2 [Listeria innocua FSL J1-023]
Length = 186
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCLAC 101
>gi|313889696|ref|ZP_07823339.1| putative ComE operon protein 2 [Streptococcus pseudoporcinus SPIN
20026]
gi|313121993|gb|EFR45089.1| putative ComE operon protein 2 [Streptococcus pseudoporcinus SPIN
20026]
Length = 152
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTELYVTHFPCINC 102
>gi|218290658|ref|ZP_03494749.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
LAA1]
gi|218239323|gb|EED06521.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
LAA1]
Length = 151
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
+ + F S A + T T V C+IV+D +I G + G
Sbjct: 9 DWHSFFASQARVMAARS---TCTRLQVGCVIVRDKRIIASGYNGSIHGDEHCVDVGCKVV 65
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL + G A GA YVT PC
Sbjct: 66 DGHCVRAIHAEQNALLQCARFGIAAEGADLYVTHTPCLTC 105
>gi|254425304|ref|ZP_05039022.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Synechococcus sp. PCC 7335]
gi|196192793|gb|EDX87757.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Synechococcus sp. PCC 7335]
Length = 162
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M + ++ G P VA +IV D ++ HAEV A+ A +
Sbjct: 1 MWRSHHLAQEA-GTAGEVP-VAAIIVGPDNQLVASAANRKERDQDPTAHAEVLAIRAAAK 58
Query: 66 EARG-----ATAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 59 HLGDWHLNQCTLYVTLEPCPMC 80
>gi|120404967|ref|YP_954796.1| deaminase-reductase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957785|gb|ABM14790.1| bifunctional deaminase-reductase domain protein [Mycobacterium
vanbaalenii PYR-1]
Length = 251
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 45/163 (27%), Gaps = 3/163 (1%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
+ + R++ ++ + T ++ +
Sbjct: 89 PYVDIQMSEDARVWRMSHGLAPELPVAVVSSRGVVPPHLLNNATVPPVVLMSAGASAAAR 148
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A+ + + L G G+ +LVEGG + ++ +D + L
Sbjct: 149 RAVDQSGARVKEFDGRLVTSAAIRDALGGLGLHRVLVEGGPTLFSQLVSDNEIDELCLTT 208
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIG 356
S ++ ++E + G D V + +
Sbjct: 209 SPKMVAGPARRIVDSASHVEISMERRGI-LVGGDGTVIVRWAR 250
>gi|21224388|ref|NP_630167.1| hypothetical protein SCO6058 [Streptomyces coelicolor A3(2)]
gi|4691384|emb|CAB41551.1| putative hydrolase [Streptomyces coelicolor A3(2)]
Length = 265
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G T LL EGG + F+ + ++D + L S ++ G+ + + + F
Sbjct: 190 AELGHTRLLTEGGPRLLGQFVAAGVLDELCLTVSPMLTAGDAQRIAGGPAVGVPRRFALA 249
Query: 342 RRDYFGSDVCLEYIGK 357
+ Y
Sbjct: 250 SLLEEEGFLFSRYRRD 265
>gi|307609878|emb|CBW99403.1| hypothetical protein LPW_11791 [Legionella pneumophila 130b]
Length = 154
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 14/157 (8%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA-- 63
F+ + +R +V ACLIV++G ++ HAEV A+ A
Sbjct: 3 FIKRTIELARENVEHGGR--PFACLIVQNGKILAEATNTVAQTHDPTAHAEVNAIRIATA 60
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E Y+ PC + + + + V R L
Sbjct: 61 KLGCEHLYDCDFYILAHPCPMC---LAAMYYCSPRKVIFITTRDEYKTYYVDDRKYFTLE 117
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+++ H +E K +
Sbjct: 118 NFYQEINKPWRERKMPMEHRPDKEAIEVYKMHQKKKS 154
>gi|257065945|ref|YP_003152201.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
gi|256797825|gb|ACV28480.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548]
Length = 148
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCP--------- 53
S++ FM A +R T V C++V + ++ G + G P
Sbjct: 7 SWEEYFMKLAKTVARRG---TCDRAYVGCVLVNEENRIVSTGYNGSIKGNPHCDEVGHTM 63
Query: 54 ---------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G + YVT PC +
Sbjct: 64 RDGHCIATIHAEMNAILYCAKEGIATKNTICYVTHFPCLNC 104
>gi|12229926|sp|Q9P4B8|RIB7_KLUMA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|9651717|gb|AAF91239.1|AF225206_5 riboflavin biosynthesis protein [Kluyveromyces marxianus]
Length = 249
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 14/200 (7%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++ L A S D+ I I+ +K H LR + DAI++G GTV+ DDP L C
Sbjct: 30 PYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDAIMLGCGTVMIDDPGLNC 89
Query: 210 RLNGLQEHSPMRIILDPH---FKLSLDSKIIKTALL---------APVIIVTENDDPVLA 257
+ E + P + K + + AP+I+V E
Sbjct: 90 KWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGDGKAPIIVVKELPSEPEE 149
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIILYRS 316
L+ + V S++VEGG V + + LVD++I+
Sbjct: 150 GVDYLVMRTNFTGKMDWSDMLVQLKSKFNVKSVMVEGGGIVINDLLQRPNLVDALIITLG 209
Query: 317 QIVIGEGGIP-SPLEEGYLE 335
+G G+ SPL E L+
Sbjct: 210 ATFLGSEGVEVSPLVEIKLK 229
>gi|46121465|ref|XP_385287.1| hypothetical protein FG05111.1 [Gibberella zeae PH-1]
Length = 265
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D+ + +A ++G SK H LR++ DAIL+G+ T+LAD P L C
Sbjct: 30 PFVTLTFATSLDSSLSLAPGVRTRLSGPDSKAMTHYLRSRHDAILIGVSTLLADYPALNC 89
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKII------------------KTALLAPVIIVTEN 251
R++G P I++DPH + + P +
Sbjct: 90 RISGATSQ-PRPIVIDPHLRWTPSHTDKVLEVARLGNGLAPFVLTGMDIQDVPAKSLEII 148
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL---V 308
++ + D + + L+ ++S++VEGG + +S ++SR +
Sbjct: 149 EEHGGKYMQVPTTLGSNGRKRFDWRDVFDALLRENLSSVMVEGGGQIINSLLDSRFHNDI 208
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCL 352
DS+I+ + +G+GG+ + V FG DV L
Sbjct: 209 DSVIVTIAPTWLGQGGVLVSPDRLQDSTGTPIPVARLSNVSWHPFGEDVVL 259
>gi|94676768|ref|YP_588482.1| cytidine/deoxycytidylate deaminase family protein [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|94219918|gb|ABF14077.1| cytidine/deoxycytidylate deaminase family protein [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 158
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V ++V +G IG G + + HAE+ AL + G+ GA YVTLEPC
Sbjct: 18 PVGAILVLEGKKIGEGLNSSIHYHDPTAHAEILALRQGGKTIGNYRITGAVMYVTLEPCL 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|325475089|gb|EGC78275.1| deoxycytidylate deaminase [Treponema denticola F0402]
Length = 168
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 34/112 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------T 47
S+D FM ++ C+I +D ++ G
Sbjct: 12 SRPSWDEYFMDVCRAIAKRATCDRG---RSGCVIARDHQILVTGYVGAPTGLPHCDDVGH 68
Query: 48 AYG--------------GCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
+ HAE A+ +A G GAT Y + PC
Sbjct: 69 QFKKLQHEDGSITQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPCRTC 120
>gi|269838886|ref|YP_001949988.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
RSL1]
gi|239793682|dbj|BAG41558.2| deoxycytidylate deaminase domain like protein [Ralstonia phage
RSL1]
Length = 145
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
D +MS A + + V C++ K ++
Sbjct: 2 DLDNFYMSIAHHAADQSHAIRRK---VGCVVAKGDRILSYAWNGMPAGFHNDCEHSVLTK 58
Query: 49 -------------YGGCPHAEVQAL---EEAGEEARGATAYVTLEPC 79
G HAEV A+ AG GAT Y+TL PC
Sbjct: 59 DPETGILQFQLLTKPGVTHAEVNAIGKLAAAGISCAGATLYLTLSPC 105
>gi|84501544|ref|ZP_00999716.1| hypothetical protein OB2597_15120 [Oceanicola batsensis HTCC2597]
gi|84390165|gb|EAQ02724.1| hypothetical protein OB2597_15120 [Oceanicola batsensis HTCC2597]
Length = 154
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 20/94 (21%)
Query: 1 MPVSSFDARFMSAALRF--SRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCP 53
MP +S FM AL + G V ++V G V+ R
Sbjct: 4 MPFTS----FMHLALDEARAAAARGEV----PVGAVLVSPGGEVVARDGNRTREKADPSA 55
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ + A E G YVTLEPC
Sbjct: 56 HAEMLVIRAACAAAGSERLPGHDLYVTLEPCPMC 89
>gi|221480648|gb|EEE19095.1| deoxycytidylate deaminase, putative [Toxoplasma gondii GT1]
gi|221501404|gb|EEE27182.1| deoxycytidylate deaminase, putative [Toxoplasma gondii VEG]
Length = 180
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 44/110 (40%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-------- 53
S+D FM + T +N V ++ + VI G G P
Sbjct: 22 SWDTYFMRLTF-LA-----STRSNCMKRRVGAIVARGNRVIATGY---NGTPSQAANCNA 72
Query: 54 -----------------------HAEVQALEEAG-EEARGATAYVTLEPC 79
HAE AL EAG + A T YVT PC
Sbjct: 73 GGCARCNDPSVSQGRALEACECIHAEANALLEAGRDRAMNGTLYVTCLPC 122
>gi|257058547|ref|YP_003136435.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8802]
gi|256588713|gb|ACU99599.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8802]
Length = 181
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
KL++ L +G +L ++GG V SF+ L+D II+ R I++G+G S E
Sbjct: 97 KLISQLNQKGYNNLYIDGG-QVIQSFLQEDLIDEIIITRVPIILGQG--VSLFGELDKTL 153
Query: 337 NFMCVRRDYFGSDVCL--EYIGKN 358
F + + +++ + YI +
Sbjct: 154 KFRHQKTQIY-NNILVKSHYIRER 176
>gi|159129710|gb|EDP54824.1| DRAP deaminase, putative [Aspergillus fumigatus A1163]
Length = 215
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVT-AYG 50
M S ++ L + TN V ++V KD ++ G T
Sbjct: 1 MTASP-HLDYLRQCLSLAERSPPR-PTNFRVGAILVSRKDGDLEFKDDRILSTGYTMELA 58
Query: 51 GCPHAEVQALEE----------------AGEEARGATAYVTLEPC 79
G HAE L E R YVT+EPC
Sbjct: 59 GNTHAEQCCLSNYAAVHSVPEDKVAEVLPAEPGRKLVMYVTMEPC 103
>gi|148284933|ref|YP_001249023.1| cytosine deaminase [Orientia tsutsugamushi str. Boryong]
gi|146740372|emb|CAM80811.1| cytosine deaminase [Orientia tsutsugamushi str. Boryong]
Length = 155
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQALE 61
FM A+ + +G V +IV V+ R T HAE+ A+
Sbjct: 2 FMLQAIEQASQAFNLGEV----PVGVVIVNRATKTVLTRAYNKVETTLNPTFHAEIIAIN 57
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
+A + G YV+LEPC+
Sbjct: 58 KACSLLSCKYLHGYDIYVSLEPCAMC 83
>gi|16800586|ref|NP_470854.1| hypothetical protein lin1518 [Listeria innocua Clip11262]
gi|16413991|emb|CAC96749.1| comEB [Listeria innocua Clip11262]
Length = 186
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCLAC 101
>gi|313618870|gb|EFR90742.1| ComE operon protein 2 [Listeria innocua FSL S4-378]
Length = 186
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGASTDKAELYVTHFPCLAC 101
>gi|167525958|ref|XP_001747313.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774148|gb|EDQ87780.1| predicted protein [Monosiga brevicollis MX1]
Length = 222
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 34/102 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH--------- 54
+D FM+ A ++ N + IV ++G G G P
Sbjct: 27 PWDDYFMAVAFLSAKRSK---DPNTQIGSCIVNAANKIVGIGY---NGMPRGCDDDALPW 80
Query: 55 -----------------AEVQAL-EEAGEEARGATAYVTLEP 78
AE+ A+ + RG Y P
Sbjct: 81 AREGPSVLDTKYPYVCNAEMNAILNKNSASLRGCRMYTAFFP 122
>gi|116201857|ref|XP_001226740.1| hypothetical protein CHGG_08813 [Chaetomium globosum CBS 148.51]
gi|88177331|gb|EAQ84799.1| hypothetical protein CHGG_08813 [Chaetomium globosum CBS 148.51]
Length = 183
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 33/152 (21%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPS---VACLIVKD--GIVIGRGVTA-----YGGCP-- 53
+M A ++ +PS V ++V +I G + G P
Sbjct: 13 DHKAYMKYAAEQAQLS----PPSPSKFCVGAVLVDADRNEIISTGYSEELPRDRPGDPGS 68
Query: 54 -HAEVQALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIR 98
HAE + + R Y T+EPC+ G + +
Sbjct: 69 THAEHCCFIKVADRHGVHDFDIAEVLPRNTVLYTTMEPCNQRLSGSRTCVERILALGNAI 128
Query: 99 RVVVCVDDPDVRVSG--RGLQWLSQKGIIVDR 128
+VV G+ L + GI V+
Sbjct: 129 KVVYVGIREPDTFIQLNEGIVRLEEAGIKVEM 160
>gi|315641043|ref|ZP_07896126.1| ComE operon protein ComEB [Enterococcus italicus DSM 15952]
gi|315483212|gb|EFU73725.1| ComE operon protein ComEB [Enterococcus italicus DSM 15952]
Length = 165
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 31/153 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-- 53
+D FM+ A+ S V +VK+ +I G GC
Sbjct: 7 PWDQYFMAQAVLLSLRSTCTRLE---VGATLVKEKRIIAGGYNGSVSGDTHCIDEGCAMV 63
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ AL + G GA YVT PC C + I++ GI+++
Sbjct: 64 DGHCIRTIHAEMNALLQCAKFGISTNGAEIYVTHFPCLQ------CTKSILQAGIKKIHY 117
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135
D + + + + + V K
Sbjct: 118 LHDYHNNLYAQELMAHVGAEVHQVTLHPHYFEK 150
>gi|256751351|ref|ZP_05492230.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
CCSD1]
gi|300913642|ref|ZP_07130959.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
gi|307723343|ref|YP_003903094.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
X513]
gi|320116879|ref|YP_004187038.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|256749733|gb|EEU62758.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus
CCSD1]
gi|300890327|gb|EFK85472.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561]
gi|307580404|gb|ADN53803.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp.
X513]
gi|319929970|gb|ADV80655.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 155
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------------- 50
S+D FM + + T V ++V D +I G
Sbjct: 10 SWDEYFMQI-VDVVKTR--STCLRRQVGAILVVDKHIISTGYNGPPTGLAHCEETGCLRE 66
Query: 51 --GCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ +A G +GAT YV+ PC +
Sbjct: 67 QLGIPSGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVSASPCVICAKM 117
>gi|220909767|ref|YP_002485078.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 7425]
gi|219866378|gb|ACL46717.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7425]
Length = 228
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 13/224 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+R H T+ +A+S D I S K+ + A++DA+L G T+ + +
Sbjct: 5 QRPHTTVVLAMSADGKIADRQRSSPQFGSTQDKSHLEARVAEADAVLFGATTLKSGGTAM 64
Query: 208 --------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
R + P++I+ L+ + + ++
Sbjct: 65 RVINPALIQHRQQEGKPAQPIQIVCTRTADLNPQLPFFRQPIPRWLLTTHLGATAWQTQP 124
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
++ + + G+ L+V GG + S + L+D L +
Sbjct: 125 GFEQVLTFESASGEIDWPAALTHFSQVGIQELVVLGGGELVASLLALDLLDDFWLTVCPL 184
Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIGKN 358
++G P+P+ + + + G +V L Y +
Sbjct: 185 LLGGSDAPTPVAGQGFLQAEAPHLELIGAEPVGGEVYLHYRRQR 228
>gi|194246540|ref|YP_002004179.1| Cytosine/adenosine deaminase [Candidatus Phytoplasma mali]
gi|193806897|emb|CAP18326.1| Cytosine/adenosine deaminase [Candidatus Phytoplasma mali]
Length = 151
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------YGGCPHAE 56
+ + D FM A + ++ V + V + +I R + G HAE
Sbjct: 1 MLNEDLFFMKEAFKEAKKAYYKNEV--PVGAVAVLNNQIIARTHNNCEKKQIFFG--HAE 56
Query: 57 VQALEEAGEEARGATA-----YVTLEPCSHY 82
+ + ++ + YVTLEPC
Sbjct: 57 FLLMMKLNKKFKNRRLNKINIYVTLEPCLMC 87
>gi|325264269|ref|ZP_08131000.1| putative deoxycytidylate deaminase [Clostridium sp. D5]
gi|324030340|gb|EGB91624.1| putative deoxycytidylate deaminase [Clostridium sp. D5]
Length = 162
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
S+D FM A+ N V C IV D ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSPDNKILSMGYNGFPIGCSDDEFPWARE 66
Query: 47 ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 67 GDDPLETKYVYSTHSELNAILNYNGGSLAGAKLYVSLFPCNEC 109
>gi|322412648|gb|EFY03556.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 155
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 102
>gi|291521321|emb|CBK79614.1| Deoxycytidylate deaminase [Coprococcus catus GD/7]
Length = 161
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 27/103 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A + + + N V IV D ++ G +
Sbjct: 10 SWDEYFMGVA-KLA--GLRSKDPNSQVGSCIVSPDNKILSIGYNGFPRGCSDDVFPWSRE 66
Query: 51 GC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHYG 83
G H+E+ A+ G G+ YV+L PC+
Sbjct: 67 GDELDTKYFYVTHSELNAILNYRGGSLEGSKIYVSLFPCNECS 109
>gi|157691278|ref|YP_001485740.1| dihydrofolate reductase family protein [Bacillus pumilus SAFR-032]
gi|157680036|gb|ABV61180.1| possible dihydrofolate reductase family protein [Bacillus pumilus
SAFR-032]
Length = 180
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + GG + SFI + LVD + L ++IG GIP +E F +
Sbjct: 109 QHIWIVGGGELLQSFIKAGLVDELYLQIVPVMIG-RGIPLF-SPVDMEAKFSLKEVRQY 165
>gi|195952447|ref|YP_002120737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
sp. Y04AAS1]
gi|195932059|gb|ACG56759.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum
sp. Y04AAS1]
Length = 222
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 75/186 (40%), Gaps = 3/186 (1%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G + + + + +H +RA+ DAI+VG T+ D+P LT R +P
Sbjct: 21 LTLYRGASSKELMTLMDEEAYRYLHEVRAKVDAIMVGCETIRTDNPSLTVRYVK--GKNP 78
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRDLKKL 278
+R+I + D+ ++ + ++ + L + + D + L
Sbjct: 79 IRVIPCSTANIPFDANVLSKDAHTIIATTKRAPEEKIKKLTEMGIEVLVTGDYLVDFELL 138
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
L L + + SL+VEGG+++ + V+ I + +++G +P+ + +
Sbjct: 139 LKKLREKDIKSLMVEGGSSINWELCKLKAVNEIRIIHLPVIVGGENVPTLVGGEGFKTLN 198
Query: 339 MCVRRD 344
+
Sbjct: 199 NILHLR 204
>gi|189220330|ref|YP_001940970.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
gi|189187188|gb|ACD84373.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
Length = 159
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56
M S D RF+ +R +V +P ++V + ++G+G HAE
Sbjct: 1 MKRS-MDLRFLERTACLARDNVLSNRGDP-FGPVVVLEDQIVGQGANRVTVLCDPTAHAE 58
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
++A+ +A + RG Y+ + P
Sbjct: 59 IEAMRQAAIKLGRFDLRGCLLYMNINPYPMC 89
>gi|68466625|ref|XP_722508.1| potential tRNA wobble position adenosine deaminase subunit
[Candida albicans SC5314]
gi|68466908|ref|XP_722369.1| potential tRNA wobble position adenosine deaminase subunit
[Candida albicans SC5314]
gi|46444339|gb|EAL03614.1| potential tRNA wobble position adenosine deaminase subunit
[Candida albicans SC5314]
gi|46444487|gb|EAL03761.1| potential tRNA wobble position adenosine deaminase subunit
[Candida albicans SC5314]
Length = 281
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQAL 60
++M+ +L + T V+C++V K +I G + G HAE AL
Sbjct: 8 HFQYMAISLFVGYKALLNNET--PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIAL 65
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+ GE + YVT+EPC
Sbjct: 66 QRFGEQKSSIDYNDLILYVTVEPCIMC 92
>gi|327438138|dbj|BAK14503.1| cytosine/adenosine deaminase [Solibacillus silvestris StLB046]
Length = 167
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ +IV +I R T HAE A++EA + T YVTLEPC
Sbjct: 27 PIGAVIVYKDEIIARAHNLRETTQNALTHAESMAIQEACKKVGSWRLEETTLYVTLEPCP 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|229818705|ref|YP_002880231.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564618|gb|ACQ78469.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 186
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG +A I + LVD+ +Y + ++G G P + + V F G V L
Sbjct: 124 GGPVLAAHAIRAGLVDTFHMYVAPTIVGGGLRGLP---DGVRLDLELVDERRFAGGTVYL 180
Query: 353 EYIGKN 358
Y+ +
Sbjct: 181 RYVPRR 186
>gi|154505649|ref|ZP_02042387.1| hypothetical protein RUMGNA_03188 [Ruminococcus gnavus ATCC 29149]
gi|153794088|gb|EDN76508.1| hypothetical protein RUMGNA_03188 [Ruminococcus gnavus ATCC 29149]
Length = 162
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
++D FM A+ N V C IV +D ++ G
Sbjct: 10 TWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGFPKGCSDDEFPWARE 66
Query: 51 GCP----------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G H+E+ A+ +G GA YV+L PC+
Sbjct: 67 GENPLETKYVYSTHSELNAILNYSGGSLAGAKLYVSLFPCNEC 109
>gi|308471917|ref|XP_003098188.1| hypothetical protein CRE_12208 [Caenorhabditis remanei]
gi|308269339|gb|EFP13292.1| hypothetical protein CRE_12208 [Caenorhabditis remanei]
Length = 194
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 32/105 (30%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------------ 53
RF+ A S N V C+IV KD ++ G G P
Sbjct: 48 HQRFLRMAKVTSLRSK---DPNTQVGCVIVDKDNCIVSVGY---NGFPIGVDDDVFRWDK 101
Query: 54 ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A + + YVTL PC+ +
Sbjct: 102 EDPEDNKHLYVVHAEMNAIINKRCATLHDCIVYVTLFPCNKCAQM 146
>gi|291526381|emb|CBK91968.1| Deoxycytidylate deaminase [Eubacterium rectale DSM 17629]
gi|291526826|emb|CBK92412.1| Deoxycytidylate deaminase [Eubacterium rectale M104/1]
Length = 161
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-------------YG 50
S+D FM A+ N V IV + ++ G
Sbjct: 12 SWDEYFMGIAMLSGMRSK---DPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWARE 68
Query: 51 GC-------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GAT YVTL PC+
Sbjct: 69 GEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNEC 108
>gi|309792074|ref|ZP_07686548.1| deaminase-reductase domain-containing protein [Oscillochloris
trichoides DG6]
gi|308225881|gb|EFO79635.1| deaminase-reductase domain-containing protein [Oscillochloris
trichoides DG6]
Length = 286
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
R+ + P+ +++ L D+ ++ +I T
Sbjct: 107 RHLWTPTQAFASDAHFFADLRMAEGRTPLPLLVVVTNRGDLPPDAAALRGDPQPVLIATT 166
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAVAHSFINS 305
++ + + L+ + GV SLL EGGA + + +
Sbjct: 167 PAGATRAYAHLGERPGVRYHISRGETVDLIGLCADLRQRMGVRSLLSEGGALIYGALVAQ 226
Query: 306 RLVDSIILYRSQIVIGE----GGIPSPLEEGYL----EKNFMCVRRDYFGS 348
RLVD L S I+IG PS +E + + G
Sbjct: 227 RLVDETFLTNSPIIIGSPPGRPARPSLIEGVGFSPDDPPHLRLLSLRRAGD 277
>gi|320106996|ref|YP_004182586.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
SP1PR4]
gi|319925517|gb|ADV82592.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis
SP1PR4]
Length = 171
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 30 SVACLIVK-DGIVIGRGV------TAYGGCPHAEVQALEEAGE-----EARGATAYVTLE 77
V ++V G ++ RG G HAE+ AL AG G + YVTLE
Sbjct: 27 PVGAIVVSPTGEILSRGQNRVIRDHDPSG--HAEMVALRAAGVALENYRLTGCSLYVTLE 84
Query: 78 PCSHY 82
PC+
Sbjct: 85 PCAMC 89
>gi|229492434|ref|ZP_04386238.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229320663|gb|EEN86480.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 249
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 2/136 (1%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
++ L +S + ++ + +I + D ++ L
Sbjct: 109 VVTHSGNLPWNSPLFTGGSRPIIVTSALGATRCQPDVQCRADIMVAGDVDVDPIAMIQGL 168
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMC 340
RG+ +L EGG A+ + + LVD + S I+ G + L +
Sbjct: 169 RDRGLKRVLCEGGPALLSTLVAHDLVDDMCFTLSPILAGPQPASGLVSAPALAVPQTLRL 228
Query: 341 VRRDYFGSDVCLEYIG 356
+ + Y
Sbjct: 229 RHVLLEAEYLYMRYQR 244
>gi|312881768|ref|ZP_07741542.1| putative deoxycytidylate deaminase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370519|gb|EFP97997.1| putative deoxycytidylate deaminase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 153
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 18/119 (15%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYG-G----------------CPHAEVQALEEAGEEARG 69
+ V +I + ++ G Y G HAE A+ A
Sbjct: 23 PSTQVGAVITQQNRIVSVGFNGYPHGISDSAETDDREMKYLKTLHAEENAILFAKRNLDD 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+VT PC + I + Q G+ V+
Sbjct: 83 CEIWVTHFPCPNCAAKI-IQTGICAVHCPEQTQDFLSRWGDKIKVSQEMFLQAGVKVNW 140
>gi|218245509|ref|YP_002370880.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 8801]
gi|218165987|gb|ACK64724.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
8801]
Length = 176
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
KL++ L +G +L ++GG V SF+ L+D II+ R I++G+G S E
Sbjct: 97 KLISQLNQKGYKNLYIDGG-QVIQSFLQEDLIDEIIITRVPIILGKG--VSLFGEREKPL 153
Query: 337 NFMCVRRDYFGSDVCL--EYIGKN 358
F + + +++ + YI +
Sbjct: 154 KFRHQKTQIY-NNILVKSHYIRER 176
>gi|313472533|ref|ZP_07813023.1| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
jensenii 1153]
gi|313448996|gb|EEQ68969.2| cytidine/deoxycytidylate deaminase family protein [Lactobacillus
jensenii 1153]
Length = 160
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
+ ++V DG VIGRG HAE+ A+ EA + + +VTLEPC
Sbjct: 28 PIGAIVVAPDGQVIGRGYNRRELDNIATHHAEILAINEACKNLNSWRLIDCSLFVTLEPC 87
Query: 80 SHY 82
+
Sbjct: 88 AMC 90
>gi|290892734|ref|ZP_06555726.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290557794|gb|EFD91316.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 174
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GGA + F+ + +D ++ + I++G+G PL E E FG
Sbjct: 107 IWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKG---IPLFEEDREHALELEEVTRFGQ 162
>gi|289177738|gb|ADC84984.1| tRNA-specific adenosine deaminase [Bifidobacterium animalis subsp.
lactis BB-12]
Length = 204
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R ++ + V +++ G VIGRG HAE+ A+ EA
Sbjct: 60 MGEALAQARMAR--SAGDVPVGAVVLDAHGEVIGRGRNLRERDADPLAHAEIVAMREAAA 117
Query: 66 -----EARGATAYVTLEPCSHYGRSP 86
T VTLEPC +
Sbjct: 118 VRGNWNLADCTLVVTLEPCPMCAGAC 143
>gi|238922541|ref|YP_002936054.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
gi|238874213|gb|ACR73920.1| dCMP deaminase [Eubacterium rectale ATCC 33656]
Length = 161
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-------------YG 50
S+D FM A+ N V IV + ++ G
Sbjct: 12 SWDEYFMGIAMLSGMRSK---DPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWARE 68
Query: 51 GC-------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GAT YVTL PC+
Sbjct: 69 GEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNEC 108
>gi|42527696|ref|NP_972794.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
35405]
gi|41818524|gb|AAS12713.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC
35405]
Length = 165
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 34/112 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------T 47
S+D FM ++ C+I +D ++ G
Sbjct: 9 KRPSWDEYFMDVCRAIAKRATCDRG---RSGCVIARDHQILVTGYVGAPTGLPHCDDVGH 65
Query: 48 AYG--------------GCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
+ HAE A+ +A G GAT Y + PC
Sbjct: 66 QFKKLQHEDGSVTQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPCRTC 117
>gi|295093723|emb|CBK82814.1| Deoxycytidylate deaminase [Coprococcus sp. ART55/1]
Length = 159
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT--------- 47
M + +D FM A+ + + V IV K+ ++ G
Sbjct: 1 MKRTDYISWDQYFMGIAMMSAERSK---DPSTQVGACIVDKNNRILSMGYNGMPAGCDDD 57
Query: 48 ----AYGGCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P HAE+ ++ G + A Y TL PC+
Sbjct: 58 TMPWGKSGAPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNEC 106
>gi|158522041|ref|YP_001529911.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
gi|158510867|gb|ABW67834.1| CMP/dCMP deaminase zinc-binding [Desulfococcus oleovorans Hxd3]
Length = 146
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + + V ++V DG V+ HAE+ + A
Sbjct: 1 MELALVEAGKARDM--DEVPVGAVLVSPDGKVLSADHNRPIAECDPSAHAEMLVIRRAAR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
T YVT+EPC
Sbjct: 59 QAANYRLPNTTLYVTVEPCVMC 80
>gi|313672555|ref|YP_004050666.1| cmp/dcmp deaminase zinc-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939311|gb|ADR18503.1| CMP/dCMP deaminase zinc-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 149
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D F + + + T V +IVKD ++ G
Sbjct: 4 SWDQYFFNI-IEVIKER--STCLRRQVGAVIVKDNRILATGYNGVPSKISHCSEKGCLRA 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+T Y +PCS +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQASKYGTPIDGSTIYTNAKPCSICTKM 111
>gi|6319629|ref|NP_009711.1| Rib7p [Saccharomyces cerevisiae S288c]
gi|465506|sp|P33312|RIB7_YEAST RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|396753|emb|CAA50471.1| unnamed protein product [Saccharomyces cerevisiae]
gi|536482|emb|CAA85112.1| RIB7 [Saccharomyces cerevisiae]
gi|642227|emb|CAA79746.1| HTP reductase [Saccharomyces cerevisiae]
gi|45269317|gb|AAS56039.1| YBR153W [Saccharomyces cerevisiae]
gi|285810483|tpg|DAA07268.1| TPA: Rib7p [Saccharomyces cerevisiae S288c]
Length = 244
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+I+ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|239623208|ref|ZP_04666239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522174|gb|EEQ62040.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 164
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
++D FM AL R + V IV +D ++ G G P
Sbjct: 10 TWDEYFMGVALLSGRRSK---DPSTQVGACIVSQDNKILSMGY---NGFPKGCSDDEFPW 63
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 64 GKEKQEEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 111
>gi|160931212|ref|ZP_02078614.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
gi|156869767|gb|EDO63139.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753]
Length = 163
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V +IVKDG++I G HAE++A++ A + G YVTLEPC
Sbjct: 32 PVGAVIVKDGVLISAGRNRRELGKNALYHAELEAIDGACKALGGWRLWQCDLYVTLEPCP 91
Query: 81 HY 82
Sbjct: 92 MC 93
>gi|291548233|emb|CBL21341.1| Deoxycytidylate deaminase [Ruminococcus sp. SR1/5]
Length = 164
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A+ + V IV D ++ G
Sbjct: 13 SWDEYFMGVAMLSGMRSK---DPHSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWGRE 69
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G GA YV+L PC+
Sbjct: 70 GDPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNEC 111
>gi|294813865|ref|ZP_06772508.1| cytidine/deoxycytidine deaminase [Streptomyces clavuligerus ATCC
27064]
gi|326442283|ref|ZP_08217017.1| deaminase [Streptomyces clavuligerus ATCC 27064]
gi|294326464|gb|EFG08107.1| cytidine/deoxycytidine deaminase [Streptomyces clavuligerus ATCC
27064]
Length = 199
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V +++ DG + G HAEV A+ A G T VTLEPC
Sbjct: 75 PVGAVVLAADGTRLATGHNERELTGDPTAHAEVLAIRRAARRIGGWRLSDCTLVVTLEPC 134
Query: 80 SHY 82
+
Sbjct: 135 TMC 137
>gi|229010080|ref|ZP_04167294.1| Enzyme [Bacillus mycoides DSM 2048]
gi|228751213|gb|EEM01025.1| Enzyme [Bacillus mycoides DSM 2048]
Length = 174
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P +E E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLF-KEKNPEI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
N FG V L Y K+
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVKS 174
>gi|225378688|ref|ZP_03755909.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
16841]
gi|225209525|gb|EEG91879.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM
16841]
Length = 161
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A+ N V IV D ++ G
Sbjct: 10 SWDEYFMGVAMLTGMRSK---DPNTQVGACIVSADHKILSMGYNGLPTGCSDDEFPWGRE 66
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P H+E+ A+ G G+T YV+L PC+
Sbjct: 67 GAPLENKYLFTTHSELNAILNYRGGSLEGSTIYVSLFPCNEC 108
>gi|116250294|ref|YP_766132.1| purine deaminase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254942|emb|CAK06016.1| putative purine deaminase [Rhizobium leguminosarum bv. viciae
3841]
Length = 156
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60
F+ A+ SR V L+VKDG VI R T + HAE+ +
Sbjct: 2 ENHEPFLREAIALSRSAVENGDE--PFGSLLVKDGEVILRAENSVFTGHDMTNHAEMNLV 59
Query: 61 EEAGEE-----ARGATAYVTLEPCSHYG 83
+ A + T Y + EPC+
Sbjct: 60 KLAAQHYDTAFLADCTLYTSTEPCAMCS 87
>gi|94985175|ref|YP_604539.1| CMP/dCMP deaminase, zinc-binding [Deinococcus geothermalis DSM
11300]
gi|94555456|gb|ABF45370.1| CMP/dCMP deaminase, zinc-binding protein [Deinococcus geothermalis
DSM 11300]
Length = 187
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-----------YGGC 52
+ ++ ALR +R S V ++V G VI RG
Sbjct: 14 ATHRPYLQEALRLAREAQAAGSA--PVGAVLVNAAGEVIARGRNRVGEAQTPEHVGAASV 71
Query: 53 PHAEVQALEEAGE--EARGATAYVTLEPCSHYG 83
HAE+ G+ +A T Y +LEPC G
Sbjct: 72 AHAEMDVFFSVGKVQDAATLTLYTSLEPCLMCG 104
>gi|288869851|ref|ZP_06112038.2| putative RibD domain protein [Clostridium hathewayi DSM 13479]
gi|288869403|gb|EFD01702.1| putative RibD domain protein [Clostridium hathewayi DSM 13479]
Length = 217
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 7/126 (5%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+++T+N I L + G L ++ G
Sbjct: 87 YFCEWSKEFVLITQNPVHPAFSVTADNLHIIKQDSLDLADALKVLEEEYGCKRLTIQSGG 146
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSD 349
+ F+ ++L+D I + + ++IG I + ++ + + D
Sbjct: 147 TLNGLFLRNKLIDYIDIVVAPVLIGGKDISTLIDGSSITSMEELNLLGVLQLETCEVLED 206
Query: 350 VCLEYI 355
+
Sbjct: 207 SYIRLR 212
>gi|319405143|emb|CBI78749.1| Cytosine/adenosine deaminase [Bartonella sp. AR 15-3]
Length = 150
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAY--GGCPHAE 56
M ++ M AL ++ V +I +I R T HAE
Sbjct: 1 MRLTP-----MEIALLEAQSAKKQ--DEVPVGAVITHGQTIIARAGNYTKKSHDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++ + A E YVTLEPC+
Sbjct: 54 MRVIRIACQIFKSERIPECDLYVTLEPCTMC 84
>gi|289641910|ref|ZP_06474066.1| hypothetical protein FsymDgDRAFT_1324 [Frankia symbiont of Datisca
glomerata]
gi|289508319|gb|EFD29262.1| hypothetical protein FsymDgDRAFT_1324 [Frankia symbiont of Datisca
glomerata]
Length = 82
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCVR 342
RG+ +L EGG ++ ++ L+D + L + ++ G +
Sbjct: 8 ERGLGRVLCEGGPSLHADLADAGLLDELCLTFAPLLAGPDHLRMVRGRRWRAPLTMTLGH 67
Query: 343 RDYFGSDVCLEYIGK 357
++ L Y+ +
Sbjct: 68 VLEEDGNLFLRYLRR 82
>gi|228919503|ref|ZP_04082867.1| Enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840146|gb|EEM85423.1| Enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 173
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG + F + L+D I+ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGGLLREFFKNNLIDEYIVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVK 173
>gi|241956270|ref|XP_002420855.1| cytosine aminohydrolase, putative; cytosine deaminase, putative
[Candida dubliniensis CD36]
gi|223644198|emb|CAX41008.1| cytosine aminohydrolase, putative [Candida dubliniensis CD36]
Length = 150
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGGCP----HAEV 57
++ D + + AL ++ + C+I DG V+G+G H E+
Sbjct: 1 MTFDDKKGLQIALDQAKKSYFEGGI--PIGSCIISSDGTVLGQGHNERIQKHSSILHGEM 58
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHY 82
ALE AG + T Y TL PCS
Sbjct: 59 SALENAGRLPGKTYKDCTIYTTLSPCSMC 87
>gi|46205243|ref|ZP_00209765.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
magnetotacticum MS-1]
Length = 141
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE---- 66
L + G +IV+DG VI R HAE+ AL A +
Sbjct: 2 LALANVAEGGR----PYGAVIVRDGEVIARAANRIHRTNDPSDHAEMVALRAASQRLGRP 57
Query: 67 -ARGATAYVTLEPCSHYG 83
Y + PC
Sbjct: 58 KLDDCIVYASGRPCPMCH 75
>gi|332519190|ref|ZP_08395657.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
gi|332045038|gb|EGI81231.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4]
Length = 143
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 31/108 (28%)
Query: 1 MPVSSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
MP + ++ A + + V LIVKD ++I G G P
Sbjct: 1 MPKNKQHKYDKAYLRIAQEWGKLSHCKRK---QVGALIVKDRMIISDGF---NGTPTGFE 54
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 55 NPCEDEEGYTKWYVLHAEANAILKVASSTQSCNGATLYITLSPCKECS 102
>gi|291278901|ref|YP_003495736.1| CMP/dCMP deaminase zinc-binding protein [Deferribacter
desulfuricans SSM1]
gi|290753603|dbj|BAI79980.1| CMP/dCMP deaminase, zinc-binding protein [Deferribacter
desulfuricans SSM1]
Length = 149
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+D F+ T V +IVKD ++ G
Sbjct: 4 DWDRYFLEIVNVVKSRS---TCLRRQVGAVIVKDRQILATGYNGVPRGITHCSETGCLRQ 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GAT Y +PCS +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAYHGVSIKGATIYTNAKPCSICTKM 111
>gi|302875602|ref|YP_003844235.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
gi|307690132|ref|ZP_07632578.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans
743B]
gi|302578459|gb|ADL52471.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
Length = 156
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 27/101 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG------------- 51
++ FM+ A + T +V +IV + ++ G G
Sbjct: 21 WNEYFMNLAKLAAERS---TCDRANVGAVIVNSENRIVATGYNGSVGSKTPHCDDIGHVM 77
Query: 52 -------CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE+ L + G + + YVT PC +
Sbjct: 78 RENHCIATQHAEINCLCYCAKEGIPVKNSVIYVTHFPCLNC 118
>gi|223938204|ref|ZP_03630100.1| bifunctional deaminase-reductase domain protein [bacterium
Ellin514]
gi|223893076|gb|EEF59541.1| bifunctional deaminase-reductase domain protein [bacterium
Ellin514]
Length = 227
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 7/156 (4%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+ + LDP +L+ S I + ++ +D + L + +
Sbjct: 72 DFIAPHKGKSYAVALDPSGRLNWKSNHIDADHIVEILAEKVSDSYLEFLQKKNISYIFGG 131
Query: 270 CDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
DLK++L L + LL+EGG + SF+ + L+D + L + G G S
Sbjct: 132 KTQIDLKRVLEKLGKYFQIKKLLLEGGGKINGSFLAAGLIDELSLLLMPVADGTIGTASL 191
Query: 329 LE-----EGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
+ + SD+ L Y +
Sbjct: 192 FDIETPSRKKSVSRLKLLATKKLTSDILWLRYKVQK 227
>gi|71904197|ref|YP_281000.1| ComE operon protein 2 [Streptococcus pyogenes MGAS6180]
gi|251783268|ref|YP_002997573.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|71803292|gb|AAX72645.1| ComE operon protein 2 [Streptococcus pyogenes MGAS6180]
gi|242391900|dbj|BAH82359.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127992|gb|ADX25289.1| ComE operon protein 2 [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 155
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 102
>gi|163938572|ref|YP_001643456.1| deaminase-reductase domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163860769|gb|ABY41828.1| bifunctional deaminase-reductase domain protein [Bacillus
weihenstephanensis KBAB4]
Length = 174
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P +E E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLKGFFKNNLIDEYVVTITPHILGS-GVPLF-KEKNPEI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
N FG V L Y K+
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVKS 174
>gi|325964826|ref|YP_004242732.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470913|gb|ADX74598.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
Sphe3]
Length = 164
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQA 59
S+ D F AA + ++ G + + + G+VI G G P H E+ A
Sbjct: 15 SALDPAF-EAAYQAAQKSAGEGGI--PIGAALARGGVVIAAGHNERVQKGDPIAHGEMSA 71
Query: 60 LEEAG--EEARGATAYVTLEPCSHY 82
L AG + R T Y TL PC+
Sbjct: 72 LRAAGRQKSYRDTTLYTTLAPCAMC 96
>gi|323349752|gb|EGA83967.1| Rib7p [Saccharomyces cerevisiae Lalvin QA23]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+I+ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|323310096|gb|EGA63290.1| Rib7p [Saccharomyces cerevisiae FostersO]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+I+ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|291436541|ref|ZP_06575931.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces ghanaensis ATCC 14672]
gi|291339436|gb|EFE66392.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces ghanaensis ATCC 14672]
Length = 101
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G T LL EGG + + + +D + L S ++ G+ + L + F
Sbjct: 20 ADLGHTRLLTEGGPRLLGQLVAAGALDELCLTVSPMLTAGDAQRIAGGPPVTLPRRFALK 79
Query: 342 RRDYFGSDVCLEYIGKN 358
+ Y +
Sbjct: 80 SMLEEDGFLFTRYQRER 96
>gi|256270197|gb|EEU05420.1| Rib7p [Saccharomyces cerevisiae JAY291]
gi|290878168|emb|CBK39227.1| Rib7p [Saccharomyces cerevisiae EC1118]
gi|323334602|gb|EGA75976.1| Rib7p [Saccharomyces cerevisiae AWRI796]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+I+ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|239928210|ref|ZP_04685163.1| hypothetical protein SghaA1_08288 [Streptomyces ghanaensis ATCC
14672]
Length = 122
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G T LL EGG + + + +D + L S ++ G+ + L + F
Sbjct: 41 ADLGHTRLLTEGGPRLLGQLVAAGALDELCLTVSPMLTAGDAQRIAGGPPVTLPRRFALK 100
Query: 342 RRDYFGSDVCLEYIGKN 358
+ Y +
Sbjct: 101 SMLEEDGFLFTRYQRER 117
>gi|207347626|gb|EDZ73736.1| YBR153Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 218
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+IL +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|190408694|gb|EDV11959.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomyces
cerevisiae RM11-1a]
gi|323356098|gb|EGA87903.1| Rib7p [Saccharomyces cerevisiae VL3]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+IL +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|313157603|gb|EFR57018.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Alistipes sp. HGB5]
Length = 145
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 28/100 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
D R++ A ++ + V LIVKD ++I G G P
Sbjct: 11 LDIRYLRMARIWAENSYCVRRK---VGALIVKDKMIISDGY---NGTPSGFENICEDENG 64
Query: 54 -------HAEVQALEEAGEEARGA---TAYVTLEPCSHYG 83
HAE A+ + + A T Y+T PC
Sbjct: 65 HTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPCIECS 104
>gi|238508822|ref|XP_002385594.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
gi|220688486|gb|EED44839.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357]
Length = 615
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 108/333 (32%), Gaps = 44/333 (13%)
Query: 64 GEEARG---ATAYVTL--EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
E +G ++ Y EP + + +S G ++
Sbjct: 261 KEAIKGYLPSSIYTKFQEEPEKLIEAGGKFCTVTDVRNVSAKWRIQNPEVKLISHDGYEY 320
Query: 119 LSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC-----G 170
GI+ V + L D +
Sbjct: 321 QKGHGIVRIRVTDGNCKAPTNPTPPKTYQDSPLPPDTLLFPQFPLDFLEPYLPKYDERRM 380
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-------LNGLQEHSPMRII 223
++G +K H LR++ DAIL+G+GTVLAD+P L CR + P +I
Sbjct: 381 QTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVI 440
Query: 224 LDPHFKLSLDSKIIK------TALLAPVIIVTENDDPVLALAFRKKNI--------NIIY 269
+DP + + + AP ++V+ K
Sbjct: 441 IDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQ 500
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326
+ +L L GV S+++EGG V +N + +DSII+ + +G GG+P
Sbjct: 501 NWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 560
Query: 327 -SP------LEEGYLEKNFMCVRRDYFGSDVCL 352
SP + N V+ G +V +
Sbjct: 561 VSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 593
>gi|83815475|ref|YP_446616.1| putative cytidine and deoxycytidylate deaminase [Salinibacter ruber
DSM 13855]
gi|83756869|gb|ABC44982.1| putative cytidine and deoxycytidylate deaminase [Salinibacter ruber
DSM 13855]
Length = 221
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGG 51
MP S RF+ AA+ + + NP ++V G V+ G T
Sbjct: 64 MPDSVDALDHERFVRAAIDEA--GSAQDAGNPPFGAVLVGPGGTVLDRAGNTEGRTGDC- 120
Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE + A E AT Y + EPC+
Sbjct: 121 TGHAETNLVRAASQEYDPERLAKATLYASTEPCAMC 156
>gi|110004586|emb|CAK98923.1| deoxycytidylate deaminase protein [Spiroplasma citri]
Length = 166
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----------------- 46
S+D F+S A + + V +V G +I G
Sbjct: 14 SWDDFFLSVAHVCAMRSK---DPHTQVGSCVVNQIGQIIATGYNGLPRGLNDDVFPWSRE 70
Query: 47 -----TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
T Y HAE+ A+ A Y TL PC+
Sbjct: 71 GKYLETKYPYVAHAELNAILSARTNLENCRIYTTLFPCAEC 111
>gi|333030069|ref|ZP_08458130.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
gi|332740666|gb|EGJ71148.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011]
Length = 146
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
D R++ A +S + V LIVKD ++I G G P
Sbjct: 13 ELDTRYIRMASIWSENSYCIRRK---VGALIVKDKMIISDGY---NGTPSGFENICEDDN 66
Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
HAE A+ + + + GAT YVT PC
Sbjct: 67 NTTKPYVLHAEANAITKIACSNNSSDGATMYVTAAPCIEC 106
>gi|260061092|ref|YP_003194172.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
gi|88785224|gb|EAR16393.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501]
Length = 150
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V +IV++ ++I G G P
Sbjct: 10 DKAYLRMANEWGKLSYCRRK---QVGAIIVRERMIISDGY---NGTPSGFENFCEDEEGY 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 64 TKWYVLHAEANAISKVASSTQSCEGATLYITLSPCRECS 102
>gi|303256500|ref|ZP_07342514.1| probable riboflavin-specific deaminase [Burkholderiales bacterium
1_1_47]
gi|302859991|gb|EFL83068.1| probable riboflavin-specific deaminase [Burkholderiales bacterium
1_1_47]
Length = 235
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----E 331
L + V +L+EGGA +F+ LVD + + + GE G PS +E E
Sbjct: 148 ALKHLEQDFNVKHMLLEGGAITCGNFLQMGLVDELSMIVYPGLDGESGHPSVIECQGVVE 207
Query: 332 GYLEKNFMCVRRDYFGSD-VCLEY 354
+ + + GS V L Y
Sbjct: 208 PLKKNRLELIDCETVGSGYVWLRY 231
>gi|194748439|ref|XP_001956653.1| GF25318 [Drosophila ananassae]
gi|190623935|gb|EDV39459.1| GF25318 [Drosophila ananassae]
Length = 187
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 39/115 (33%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------ 53
M +D FM+ +L ++ V IV ++ G G P
Sbjct: 7 MSYLHWDDYFMATSLLSAQRSK---DPVTQVGACIVDSQNRIVAIGY---NGFPRNCSDD 60
Query: 54 -------------------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 61 EFPWTKAKKDTKDFDPLKDKKMYVVHAEANAILNSNGATLTGTRLYTTLFPCNEC 115
>gi|166033064|ref|ZP_02235893.1| hypothetical protein DORFOR_02786 [Dorea formicigenerans ATCC
27755]
gi|166027421|gb|EDR46178.1| hypothetical protein DORFOR_02786 [Dorea formicigenerans ATCC
27755]
Length = 162
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
++D FM A + S + N V C IV +D ++ G
Sbjct: 10 NWDEYFMGVA-KLS--GLRSKDPNTQVGCCIVSQDNKILSMGYNGLPKGCSDDEFPWVRE 66
Query: 47 ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 67 GEDPLKTKYVYTVHSELNAILNFRGGSLEGAKLYVSLFPCNEC 109
>gi|71000341|ref|XP_754865.1| DRAP deaminase [Aspergillus fumigatus Af293]
gi|66852502|gb|EAL92827.1| DRAP deaminase, putative [Aspergillus fumigatus Af293]
gi|159127878|gb|EDP52993.1| DRAP deaminase, putative [Aspergillus fumigatus A1163]
Length = 193
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 29/102 (28%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNP---SVACLIV--KDGIVIGRGVT-----AYGGCP 53
S +M AL +R P V ++V ++ G + G P
Sbjct: 12 SGDHKAYMEYALEKARLS----PPAPTKFCVGAVLVDADKNEILSTGYSMELPGDRPGDP 67
Query: 54 ---HAEVQALEEAGEE------------ARGATAYVTLEPCS 80
HAE + E+ + Y T+EPC+
Sbjct: 68 GNTHAEQCCFIKVAEKHNIPEDRLGEVLPKNTVLYTTMEPCN 109
>gi|296171942|ref|ZP_06852987.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893875|gb|EFG73647.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 253
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
LL L RG+ +L EGG + S I ++D + L + ++G L
Sbjct: 172 VLLATLGARGMRRILTEGGPMLLDSLIRRDMLDELCLTVAPYLVGGLARRIATGPSQLLT 231
Query: 337 NFMCVRRDYFGSD---VCLEYIG 356
D + Y+
Sbjct: 232 RMRRAHV--LTDDAGYLYTRYVK 252
>gi|290558972|gb|EFD92355.1| CMP/dCMP deaminase zinc-binding [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 159
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 41/120 (34%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M S+D F + S AC+IVK+ ++ G G P
Sbjct: 1 MSRPSWDEYFTEITKKVSERSTCDRGHA---ACVIVKENRILATGY---AGSPKGMPHCD 54
Query: 54 -------------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +TAY+T+EPC +
Sbjct: 55 DVGHLLRKQYDNETGEITVHCLRTVHAEQNAITQAAKFGVSLSDSTAYITMEPCFTCAKM 114
>gi|241203520|ref|YP_002974616.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857410|gb|ACS55077.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 222
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ H RA DAI+VG GTVL+DDPELT R +P+RI+ +L LD+K++
Sbjct: 34 DLRAWFHGQRAAHDAIMVGAGTVLSDDPELTVRHAP--GPNPLRIVPSSMGRLPLDAKLL 91
Query: 238 KTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
V++ D + + DL L+ IL RG+ S++VEGG
Sbjct: 92 NDGHPTVVVVSRSAKEADIEALKSKPNVEVVRCGERRVDLPGLMNILDARGIKSMIVEGG 151
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + HS +RLV I++ ++ G PS + + F +
Sbjct: 152 SRLLHSLHEARLVHRIVIKHIPVITGSADAPSYMRPDEYSRPFELSKWRLV 202
>gi|256003264|ref|ZP_05428256.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
gi|255992955|gb|EEU03045.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum DSM 2360]
Length = 174
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + T V LIVKD ++ G
Sbjct: 25 SWDEYFMEI-VEL--IKTRSTCLRRQVGALIVKDKRILATGYNGAPMGCKHCSEIGCLRE 81
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G T YVT +PC +
Sbjct: 82 KLNVPSGQRHELCRAIHAEQNAIVQAAYSGTSVNGGTLYVTTQPCILCAKM 132
>gi|228937887|ref|ZP_04100515.1| Enzyme [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228970768|ref|ZP_04131408.1| Enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001]
gi|228788893|gb|EEM36832.1| Enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001]
gi|228821793|gb|EEM67793.1| Enzyme [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326938366|gb|AEA14262.1| pyrimidine reductase [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 146
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D I+ + ++G G+P ++ E N FG
Sbjct: 81 IWMVGGGSLLREFFKNNLIDEYIVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 138
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 139 VNLYYKVK 146
>gi|228977343|ref|ZP_04137738.1| Enzyme [Bacillus thuringiensis Bt407]
gi|228782320|gb|EEM30503.1| Enzyme [Bacillus thuringiensis Bt407]
Length = 149
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D I+ + ++G G+P ++ E N FG
Sbjct: 84 IWMVGGGSLLREFFKNNLIDEYIVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 141
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 142 VNLYYKVK 149
>gi|50914883|ref|YP_060855.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10394]
gi|94989182|ref|YP_597283.1| comE operon protein 2 [Streptococcus pyogenes MGAS9429]
gi|94993070|ref|YP_601169.1| ComE operon protein 2 [Streptococcus pyogenes MGAS2096]
gi|94995003|ref|YP_603101.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10750]
gi|50903957|gb|AAT87672.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10394]
gi|94542690|gb|ABF32739.1| comE operon protein 2 [Streptococcus pyogenes MGAS9429]
gi|94546578|gb|ABF36625.1| ComE operon protein 2 [Streptococcus pyogenes MGAS2096]
gi|94548511|gb|ABF38557.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10750]
Length = 168
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 25 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 81
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 82 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 117
>gi|88799403|ref|ZP_01114981.1| hypothetical protein MED297_17393 [Reinekea sp. MED297]
gi|88777942|gb|EAR09139.1| hypothetical protein MED297_17393 [Reinekea sp. MED297]
Length = 161
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 1 MPVSSFDARFMSAA---LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GC 52
M S D M A + + +V A ++V +G +IG+GV
Sbjct: 1 MCNSISDEFLMEYADKVINLAISNVKEDGL--PFAAIVVDQNGEIIGKGVNQVAKHLDCT 58
Query: 53 PHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+QA+ EA +G V+ EPC+
Sbjct: 59 AHAEIQAIREASGNEKTVSLKGMILIVSGEPCALC 93
>gi|320590398|gb|EFX02841.1| cytidine and deoxycytidylate deaminase [Grosmannia clavigera
kw1407]
Length = 173
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEV 57
P++ D +M AL + S N V ++V G ++ G T G HAE
Sbjct: 3 PIAPADHPAYMRHALSLAEKSPPRPS-NFRVGAVLVDAASGRILADGFTLELHGNTHAEQ 61
Query: 58 QALEE 62
+
Sbjct: 62 CCFMK 66
>gi|228906398|ref|ZP_04070281.1| Enzyme [Bacillus thuringiensis IBL 200]
gi|228853214|gb|EEM97988.1| Enzyme [Bacillus thuringiensis IBL 200]
Length = 173
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D I+ + ++G G+P +E E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVPLF-KEKNPEINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|229108258|ref|ZP_04237880.1| Enzyme [Bacillus cereus Rock1-15]
gi|228675274|gb|EEL30496.1| Enzyme [Bacillus cereus Rock1-15]
Length = 173
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D I+ + ++G G+P +E E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVPLF-KEKNPEINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|167619629|ref|ZP_02388260.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis Bt4]
Length = 194
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D R+M + + + V +IV+ VI RG G HAE+ AL
Sbjct: 27 ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 84
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 85 RAAARALRNYRMPGCELYVTLEPCLMCSGAIM 116
>gi|167581517|ref|ZP_02374391.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis TXDOH]
Length = 194
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D R+M + + + V +IV+ VI RG G HAE+ AL
Sbjct: 27 ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 84
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 85 RAAARALRNYRMPGCELYVTLEPCLMCSGAIM 116
>gi|323338689|gb|EGA79905.1| Rib7p [Saccharomyces cerevisiae Vin13]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+IJ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|323305972|gb|EGA59707.1| Rib7p [Saccharomyces cerevisiae FostersB]
Length = 244
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D ILVG GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+IJ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|302554925|ref|ZP_07307267.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
viridochromogenes DSM 40736]
gi|302472543|gb|EFL35636.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
viridochromogenes DSM 40736]
Length = 267
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G T LL EGG + + + ++D + L S ++ G+ + + + F V
Sbjct: 192 ADLGHTRLLTEGGPRLLGQLVAAGVLDELCLTVSPMLTAGDAQRIAGGPAVTVPRRFRLV 251
Query: 342 RRDYFGSDVCLEY 354
+ Y
Sbjct: 252 SMLEEDGFLFTRY 264
>gi|148228295|ref|NP_001089483.1| tRNA-specific adenosine deaminase 2 [Xenopus laevis]
gi|82225873|sp|Q4V7V8|ADAT2_XENLA RecName: Full=tRNA-specific adenosine deaminase 2; AltName:
Full=Deaminase domain-containing protein 1; AltName:
Full=tRNA-specific adenosine-34 deaminase subunit ADAT2
gi|66912051|gb|AAH97698.1| MGC115242 protein [Xenopus laevis]
Length = 175
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL- 60
+M A + ++ + G V CL+V V+G+G HAE+ A+
Sbjct: 11 QNWMHKAFQMAQDALNNGEV----PVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVAID 66
Query: 61 ----------EEAGEEARGATAYVTLEPCSHY 82
+++ + YVT+EPC
Sbjct: 67 QVLDWCEMNSKKSTDVFENIVLYVTVEPCIMC 98
>gi|320091485|gb|ADW08980.1| dihydrofolate reductase superfamily protein [Arthrobacter sp. HW08]
Length = 45
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+GV ++VEGG+++ +F+ + LVD +I+Y + ++
Sbjct: 8 FDQGVRHVMVEGGSSILSTFLGAHLVDELIVYMAPTLL 45
>gi|218231716|ref|YP_002365445.1| dihydrofolate reductase family protein [Bacillus cereus B4264]
gi|218159673|gb|ACK59665.1| dihydrofolate reductase family protein [Bacillus cereus B4264]
Length = 173
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D I+ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYIVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|83719984|ref|YP_442586.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis E264]
gi|83653809|gb|ABC37872.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis E264]
Length = 194
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D R+M + + + V +IV+ VI RG G HAE+ AL
Sbjct: 27 ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 84
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 85 RAAARALRNYRMPGCELYVTLEPCLMCSGAIM 116
>gi|307565320|ref|ZP_07627813.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella amnii CRIS 21A-A]
gi|307345989|gb|EFN91333.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Prevotella amnii CRIS 21A-A]
Length = 145
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
S D R++ A ++ V L+VK+ ++I G G P
Sbjct: 7 SLDCRYLRMARIWAENSYCQRRK---VGTLVVKNKMIISDGY---NGTPSGFENVCEDSN 60
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE A+ +G + GAT YVT PC
Sbjct: 61 NVTKPYVLHAEANAITKLARSGNNSEGATIYVTDAPCIEC 100
>gi|45185761|ref|NP_983477.1| ACR075Cp [Ashbya gossypii ATCC 10895]
gi|44981516|gb|AAS51301.1| ACR075Cp [Ashbya gossypii ATCC 10895]
Length = 245
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQAL 60
+ M A+R +R+ + G T VAC+ V +I G+ G HAE A+
Sbjct: 6 QHMRTAIRLARYALDHGET----PVACVFVHTPSDQIIAYGMNDTNRSLTGIAHAEFGAI 61
Query: 61 EEAGEE--------ARGATAYVTLEPCSHY 82
+ E + T YVT+EPC
Sbjct: 62 AQVQELFGEQDASIFKEVTVYVTVEPCVMC 91
>gi|321465150|gb|EFX76153.1| hypothetical protein DAPPUDRAFT_306296 [Daphnia pulex]
Length = 171
Score = 56.9 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 23/99 (23%)
Query: 3 VSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGI-VIGRGVTA----YGGCPHA 55
+S +M A +R + G V C++ +G +IG G HA
Sbjct: 1 MSELATCYMDRAFELAREALSVGEV----PVGCVLHLEGYGIIGEGRNRVNETKNATRHA 56
Query: 56 EVQALEEAGEEARGAT------------AYVTLEPCSHY 82
E++A++ A + T +V +EPC
Sbjct: 57 ELEAIDSALLWIKKNTSESYSQVFGKTEVWVNVEPCIQC 95
>gi|145299654|ref|YP_001142495.1| cytidine/deoxycytidylate deaminase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852426|gb|ABO90747.1| cytidine/deoxycytidylate deaminase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 172
Score = 56.9 bits (135), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQA 59
+ ++ AL+ + + A L+V++ ++ V HAE++A
Sbjct: 20 NPSHQEWLEQALQLALQNRQRGGR--PFAALLVQNDRLVAGAVNAMHLEGDPTRHAELEA 77
Query: 60 LEEAGEE--ARGATAYVTLEPCSHY 82
L +A + GA Y + PC
Sbjct: 78 LRQASQSGPLAGAIIYASGHPCPMC 102
>gi|229015976|ref|ZP_04172937.1| Enzyme [Bacillus cereus AH1273]
gi|229022193|ref|ZP_04178743.1| Enzyme [Bacillus cereus AH1272]
gi|228739124|gb|EEL89570.1| Enzyme [Bacillus cereus AH1272]
gi|228745336|gb|EEL95377.1| Enzyme [Bacillus cereus AH1273]
Length = 179
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G GIP +E E N FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GIPLF-KEKNPEINLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|225570086|ref|ZP_03779111.1| hypothetical protein CLOHYLEM_06182 [Clostridium hylemonae DSM
15053]
gi|225161556|gb|EEG74175.1| hypothetical protein CLOHYLEM_06182 [Clostridium hylemonae DSM
15053]
Length = 162
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A+ N V C IV +D ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGLPIGCSDDEFPWDRE 66
Query: 47 ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 67 GEDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNEC 109
>gi|228983850|ref|ZP_04144045.1| Enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228775899|gb|EEM24270.1| Enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 173
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVK 173
>gi|229188856|ref|ZP_04315889.1| Enzyme [Bacillus cereus ATCC 10876]
gi|228594561|gb|EEK52347.1| Enzyme [Bacillus cereus ATCC 10876]
Length = 173
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVK 173
>gi|218895703|ref|YP_002444114.1| dihydrofolate reductase family protein [Bacillus cereus G9842]
gi|228899334|ref|ZP_04063597.1| Enzyme [Bacillus thuringiensis IBL 4222]
gi|228963746|ref|ZP_04124888.1| Enzyme [Bacillus thuringiensis serovar sotto str. T04001]
gi|218541110|gb|ACK93504.1| dihydrofolate reductase family protein [Bacillus cereus G9842]
gi|228795982|gb|EEM43448.1| Enzyme [Bacillus thuringiensis serovar sotto str. T04001]
gi|228860365|gb|EEN04762.1| Enzyme [Bacillus thuringiensis IBL 4222]
Length = 173
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVK 173
>gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
Length = 533
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
M AL +R L P V +++ G +IG G HAE+ AL A
Sbjct: 383 MGEALGLAREAA-LAQEVP-VGAVVLGPGGRIIGSGRNTSRADSDMTRHAELAALRAATA 440
Query: 66 E-----ARGATAYVTLEPCSHY 82
E G T VTLEPC
Sbjct: 441 ELGTAYLTGCTLVVTLEPCPMC 462
>gi|218778327|ref|YP_002429645.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
AK-01]
gi|218759711|gb|ACL02177.1| CMP/dCMP deaminase zinc-binding [Desulfatibacillum alkenivorans
AK-01]
Length = 169
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------HAEVQA 59
+FM+ AL +R + P V C++V DG VI +G HAE+ A
Sbjct: 2 DHMQFMNKALELARQAL-EAGEFP-VGCILVHDGRVIAQGARVGVAGGGTGELEHAEMVA 59
Query: 60 LEEAGEEARGA------TAYVTLEPCSHY 82
+ E A T Y T+EPC
Sbjct: 60 MAR-FENMENAPPPSEVTIYCTMEPCLMC 87
>gi|116872912|ref|YP_849693.1| zinc-binding, ComEB family competence protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741790|emb|CAK20914.1| zinc-binding, ComEB family competence protein [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 186
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGASTDRAELYVTHFPCLAC 101
>gi|169828565|ref|YP_001698723.1| hypothetical protein Bsph_3080 [Lysinibacillus sphaericus C3-41]
gi|168993053|gb|ACA40593.1| Hypothetical ywjB protein [Lysinibacillus sphaericus C3-41]
Length = 177
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + +F+ +LVD I+ + +IG GIP + E + + +G
Sbjct: 109 IWMVGGAHILDAFLQEQLVDEWIITITPHLIGA-GIPLFKQPRPFE-DLKLLETKRYGQM 166
Query: 350 VCLEYIGKNL 359
V + Y +
Sbjct: 167 VQMHYQVRKE 176
>gi|145221806|ref|YP_001132484.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium gilvum PYR-GCK]
gi|315446457|ref|YP_004079336.1| tRNA-adenosine deaminase [Mycobacterium sp. Spyr1]
gi|145214292|gb|ABP43696.1| tRNA-adenosine deaminase [Mycobacterium gilvum PYR-GCK]
gi|315264760|gb|ADU01502.1| tRNA-adenosine deaminase [Mycobacterium sp. Spyr1]
Length = 149
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
D + AAL + G + ++ +G + R A HAE+ AL
Sbjct: 3 DEDLIRAALD-AARGAGPRDV--PIGAVVFDAEGTELARAANAREELGDPTAHAEILALR 59
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A G GAT VT+EPC+
Sbjct: 60 AAALVHGDGWRLEGATLAVTVEPCTMC 86
>gi|322373694|ref|ZP_08048230.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C150]
gi|321278736|gb|EFX55805.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus
sp. C150]
Length = 151
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ T V ++VKD +I G G
Sbjct: 10 YFMANAELISKRS---TCDRAYVGAVLVKDNRIIATGYNGGVSETDNCNEVGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 102
>gi|229143376|ref|ZP_04271807.1| Enzyme [Bacillus cereus BDRD-ST24]
gi|228640183|gb|EEK96582.1| Enzyme [Bacillus cereus BDRD-ST24]
Length = 173
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N + FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLMDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|301163169|emb|CBW22719.1| putative RibD-family protein [Bacteroides fragilis 638R]
Length = 225
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
+ + + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 138 PQAMELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISR 197
Query: 334 ---LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 198 VECNPYKLKLESVEQWEADIVWLRYKVK 225
>gi|168495122|ref|YP_001686860.1| dCMP deaminase [Azospirillum phage Cd]
gi|46241683|gb|AAS83068.1| dCMP deaminase-like protein [Azospirillum brasilense]
gi|168148881|emb|CAO99345.1| dCMP deaminase [Azospirillum phage Cd]
Length = 167
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 26/147 (17%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP--------- 53
++ D RFM+ A + V ++V G + G G
Sbjct: 24 TAADQRFMTYARHQAAKSK---DPCKQVGAVVVGPLGEIRAIGHNRLPGDRDCPDTYADK 80
Query: 54 --------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAEV A+ AG G T +VT C+ R A + +
Sbjct: 81 RRKRERIVHAEVVAITSAARAGVALDGGTLFVTHPCCADCARMLVEAGIVEVVWPEQATF 140
Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ ++ G+ V RM
Sbjct: 141 S--EHWQESLREAEDEFARAGVRVRRM 165
>gi|319763286|ref|YP_004127223.1| cmp/dcmp deaminase zinc-binding protein [Alicycliphilus
denitrificans BC]
gi|317117847|gb|ADV00336.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans BC]
Length = 358
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M S DA +M AL +R + G V ++V+ G VI G A H
Sbjct: 1 MSESEDDATWMREALAQARAALQDGEV----PVGAVLVRGGEVIATGRNAPIAGHDPTAH 56
Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHY 82
AE+ AL A G T YVTLEPC+
Sbjct: 57 AEIAALRAAAARLGNYRLDGCTLYVTLEPCAMC 89
>gi|225419861|ref|ZP_03762164.1| hypothetical protein CLOSTASPAR_06202 [Clostridium asparagiforme
DSM 15981]
gi|225041485|gb|EEG51731.1| hypothetical protein CLOSTASPAR_06202 [Clostridium asparagiforme
DSM 15981]
Length = 195
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A+ + + V IV D ++ G G P
Sbjct: 41 TWDEYFMGVAILAGKRSK---DPSTQVGACIVSPDNKILSMGY---NGFPKGCSDDEFPW 94
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 95 ERENEADDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 142
>gi|195977496|ref|YP_002122740.1| dCMP deaminase; late competence protein ComEB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974201|gb|ACG61727.1| dCMP deaminase; late competence protein ComEB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 153
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEEGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTAGTEIYVTHFPCINC 102
>gi|146296225|ref|YP_001179996.1| CMP/dCMP deaminase, zinc-binding [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409801|gb|ABP66805.1| CMP/dCMP deaminase, zinc-binding protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 151
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPSNLPHCEEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVNIDGSVIYTTTYPCVICAKM 111
>gi|222624837|gb|EEE58969.1| hypothetical protein OsJ_10660 [Oryza sativa Japonica Group]
Length = 169
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 26/88 (29%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE------- 61
FM AL +++ + V C+IV+DG HAE++A++
Sbjct: 7 EFMELALEQAKFALDNLEV--PVGCVIVEDGK----------ATRHAEMEAIDILLREWQ 54
Query: 62 -------EAGEEARGATAYVTLEPCSHY 82
+ E+ YVT EPC
Sbjct: 55 GMGLDQPQVAEKFARCDLYVTCEPCIMC 82
>gi|291561900|emb|CBL40703.1| Deoxycytidylate deaminase [butyrate-producing bacterium SS3/4]
Length = 162
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 34/106 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A + N V IV D ++ G G P
Sbjct: 10 TWDEYFMGVAKLSAMRSK---DPNTQVGACIVSEDNKILSMGY---NGFPKGCSDDEFPW 63
Query: 54 ----------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 64 DKMDEDPYNRKYFYVTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 109
>gi|251780701|ref|ZP_04823621.1| guanine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243085016|gb|EES50906.1| guanine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 157
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
M ++ + + P IVKDG +I H E+ A+ +A +
Sbjct: 7 MDLCVKQCKEGMLNLEGGP-FGAAIVKDGKIIALANNTVIKDNDPTAHGEMNAIRQACNK 65
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y T EPC
Sbjct: 66 LSTFDLSGCELYTTSEPCPMC 86
>gi|239993617|ref|ZP_04714141.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas
macleodii ATCC 27126]
Length = 93
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55
+ D +M AL + G V +V +G +IG G T HA
Sbjct: 40 TEEDIMWMRHALTLADKAESIGEV----PVGACVVLNGELIGEGFNTPITDNDPSAHA 93
>gi|269976007|ref|ZP_06183011.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris 28-1]
gi|306817398|ref|ZP_07451143.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris ATCC
35239]
gi|269935835|gb|EEZ92365.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris 28-1]
gi|304649839|gb|EFM47119.1| tRNA-specific adenosine deaminase [Mobiluncus mulieris ATCC
35239]
Length = 174
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHA 55
+S + R + A + S + V ++ GIV G G+ HA
Sbjct: 5 SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVAGLGLNQREIPPHDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ A+ EA R G T VTLEPC+
Sbjct: 63 EIVAMREAAGRLRTWNLAGCTLVVTLEPCTMC 94
>gi|260463254|ref|ZP_05811455.1| CMP/dCMP deaminase zinc-binding [Mesorhizobium opportunistum
WSM2075]
gi|259030844|gb|EEW32119.1| CMP/dCMP deaminase zinc-binding [Mesorhizobium opportunistum
WSM2075]
Length = 149
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +I G V+ HAE+ A+ EA E G YVTLEPC+
Sbjct: 24 PVGAVIASGGTVVASAGNRTRELADPTAHAEMLAIREACGKLATERLTGHDLYVTLEPCA 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|227876439|ref|ZP_03994551.1| nucleoside deaminase [Mobiluncus mulieris ATCC 35243]
gi|227842980|gb|EEJ53177.1| nucleoside deaminase [Mobiluncus mulieris ATCC 35243]
Length = 174
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHA 55
+S + R + A + S + V ++ GIV G G+ HA
Sbjct: 5 SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVAGLGLNQREIPPHDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ A+ EA R G T VTLEPC+
Sbjct: 63 EIVAMREAAGRLRTWNLAGCTLVVTLEPCTMC 94
>gi|328948242|ref|YP_004365579.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
DSM 2489]
gi|328448566|gb|AEB14282.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens
DSM 2489]
Length = 165
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---------- 53
++D FM A ++ C+I KD ++ G + G
Sbjct: 12 TWDEYFMEVARTIAKRATCDRG---RSGCVIAKDNQILVTGYVGSPAGLAHCDEVGHLMR 68
Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT Y + PC
Sbjct: 69 KMIHADGSVTQHCVRTVHAEQNAICQAAKRGISIDGATVYCKMTPCRTC 117
>gi|296166409|ref|ZP_06848841.1| possible guanine deaminase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898170|gb|EFG77744.1| possible guanine deaminase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 166
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IV DG V+ HAE+ A+ EA
Sbjct: 4 FARRTIELARRNVADGGR--PFATVIVNDGEVLAESANMVAQANDPTAHAEILAIREACM 61
Query: 65 ----EEARGATAYVTLEPCSHY 82
E +T Y+ PC
Sbjct: 62 KLGTEHLVDSTVYLMAHPCPMC 83
>gi|256784422|ref|ZP_05522853.1| hypothetical protein SlivT_08038 [Streptomyces lividans TK24]
gi|289768301|ref|ZP_06527679.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
gi|289698500|gb|EFD65929.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
Length = 265
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRR 343
G T LL EGG + F+ + ++D + L S ++ G+ + + + F
Sbjct: 192 LGHTRLLTEGGPRLLGQFVAAGVLDELCLTVSPMLTAGDAQRIAGGPAVGVPRRFALASL 251
Query: 344 DYFGSDVCLEYIGK 357
+ Y
Sbjct: 252 LEEEGFLFSRYRRD 265
>gi|225869190|ref|YP_002745138.1| cytidine and deoxycytidylate deaminase [Streptococcus equi subsp.
zooepidemicus]
gi|225869858|ref|YP_002745805.1| cytidine and deoxycytidylate deaminase [Streptococcus equi subsp.
equi 4047]
gi|225699262|emb|CAW92581.1| putative cytidine and deoxycytidylate deaminase [Streptococcus equi
subsp. equi 4047]
gi|225702466|emb|CAX00368.1| putative cytidine and deoxycytidylate deaminase [Streptococcus equi
subsp. zooepidemicus]
Length = 153
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEEGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTAGTEIYVTHFPCINC 102
>gi|212691512|ref|ZP_03299640.1| hypothetical protein BACDOR_01007 [Bacteroides dorei DSM 17855]
gi|212665890|gb|EEB26462.1| hypothetical protein BACDOR_01007 [Bacteroides dorei DSM 17855]
Length = 217
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
+ + + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 130 PQAMELLCEHFGVECLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISR 189
Query: 334 ---LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 190 VECNPYKLKLESVEQWEADIVWLRYKVK 217
>gi|16803523|ref|NP_465008.1| hypothetical protein lmo1483 [Listeria monocytogenes EGD-e]
gi|47095436|ref|ZP_00233046.1| comE operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
gi|254827771|ref|ZP_05232458.1| comEB [Listeria monocytogenes FSL N3-165]
gi|254829758|ref|ZP_05234413.1| hypothetical protein Lmon1_00315 [Listeria monocytogenes 10403S]
gi|254898351|ref|ZP_05258275.1| hypothetical protein LmonJ_01010 [Listeria monocytogenes J0161]
gi|254912157|ref|ZP_05262169.1| comE operon protein 2 [Listeria monocytogenes J2818]
gi|254936485|ref|ZP_05268182.1| comEB [Listeria monocytogenes F6900]
gi|290893844|ref|ZP_06556822.1| comEB [Listeria monocytogenes FSL J2-071]
gi|16410912|emb|CAC99561.1| comEB [Listeria monocytogenes EGD-e]
gi|47016257|gb|EAL07180.1| comE operon protein 2 [Listeria monocytogenes str. 1/2a F6854]
gi|258600151|gb|EEW13476.1| comEB [Listeria monocytogenes FSL N3-165]
gi|258609078|gb|EEW21686.1| comEB [Listeria monocytogenes F6900]
gi|290556561|gb|EFD90097.1| comEB [Listeria monocytogenes FSL J2-071]
gi|293590129|gb|EFF98463.1| comE operon protein 2 [Listeria monocytogenes J2818]
Length = 186
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLAC 101
>gi|229154351|ref|ZP_04282471.1| Enzyme [Bacillus cereus ATCC 4342]
gi|228629175|gb|EEK85882.1| Enzyme [Bacillus cereus ATCC 4342]
Length = 179
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 101 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 158
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 159 NLTLTDTKRFGQFVNLYYKVK 179
>gi|182435251|ref|YP_001822970.1| hypothetical protein SGR_1458 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326775890|ref|ZP_08235155.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|178463767|dbj|BAG18287.1| putative hydrolase [Streptomyces griseus subsp. griseus NBRC 13350]
gi|326656223|gb|EGE41069.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 262
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEK 336
L+ L GRG+T L EGG + F+ + ++D + L S ++ G+ + + +
Sbjct: 180 LVRELAGRGLTRQLTEGGPRLLGQFVAAGVLDELCLTLSPMLTAGDAQRIAGGPGVAVPE 239
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
F + Y +
Sbjct: 240 RFFLASLLEEAGFLFSRYRRTD 261
>gi|300114535|ref|YP_003761110.1| bifunctional deaminase-reductase domain-containing protein
[Nitrosococcus watsonii C-113]
gi|299540472|gb|ADJ28789.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
watsonii C-113]
Length = 364
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 10/202 (4%)
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
L + ++ I+ +A + D I A S I+ + + H LRA DA+LV
Sbjct: 129 PCLAGHHIASQKRLPWISTHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLV 188
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHF---------KLSLDSKIIKTALLAPVI 246
G GTV D+P LT R + + + H + + I
Sbjct: 189 GRGTVEKDNPRLTVREVPGENPKRVILDRQCHLLAGEKPYRIFQEPGHNWLLHSDSLHKI 248
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + DLK +L + G+ S+ VEGG+ F+
Sbjct: 249 ETHYAIPRKVIPLGVRDQAGEKNGKLMDLKAILETIWSLGIRSVFVEGGSKTLSFFLAGG 308
Query: 307 LVDSIILYRSQIVIGEGGIPSP 328
+ + L+ + +++G G+PS
Sbjct: 309 QTNLLHLHIAPLLLGS-GLPSF 329
>gi|284801870|ref|YP_003413735.1| hypothetical protein LM5578_1625 [Listeria monocytogenes 08-5578]
gi|284995012|ref|YP_003416780.1| hypothetical protein LM5923_1577 [Listeria monocytogenes 08-5923]
gi|284057432|gb|ADB68373.1| hypothetical protein LM5578_1625 [Listeria monocytogenes 08-5578]
gi|284060479|gb|ADB71418.1| hypothetical protein LM5923_1577 [Listeria monocytogenes 08-5923]
Length = 186
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLAC 101
>gi|271964778|ref|YP_003338974.1| guanine deaminase [Streptosporangium roseum DSM 43021]
gi|270507953|gb|ACZ86231.1| Guanine deaminase [Streptosporangium roseum DSM 43021]
Length = 188
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
FM+ A+R + V P +IVKDG +I RG H EV+A+ +A
Sbjct: 4 KNFMTEAVRLATESVMNGWGGP-FGTVIVKDGDIIARGQNRVLLTGDPTAHGEVEAIRKA 62
Query: 64 GEEAR 68
+
Sbjct: 63 IQILN 67
>gi|332297977|ref|YP_004439899.1| CMP/dCMP deaminase zinc-binding protein [Treponema brennaborense
DSM 12168]
gi|332181080|gb|AEE16768.1| CMP/dCMP deaminase zinc-binding protein [Treponema brennaborense
DSM 12168]
Length = 166
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 34/108 (31%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP----------- 53
+D FM ++ C+I +D ++ G + G P
Sbjct: 14 WDDYFMEICRTVAKRATCDRG---RSGCVIARDNRILVTGYVGSPAGLPHCDDVGHLLKK 70
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT Y + PC
Sbjct: 71 MVHENGTVTQHCVRTVHAEQNAICQAAKNGISIDGATLYCKMTPCRTC 118
>gi|302522550|ref|ZP_07274892.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. SPB78]
gi|302431445|gb|EFL03261.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. SPB78]
Length = 262
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L L RG+ L EGG + I + VD + L S + L
Sbjct: 178 LRAELAARGLRRQLAEGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALTTP 237
Query: 338 FMCVRRDYFGSD--VCLEYIGK 357
D + Y+
Sbjct: 238 ARLRPASILAEDGFLFTRYVRD 259
>gi|29829786|ref|NP_824420.1| hypothetical protein SAV_3244 [Streptomyces avermitilis MA-4680]
gi|29606895|dbj|BAC70955.1| putative bifunctional deaminase-reductase-like protein
[Streptomyces avermitilis MA-4680]
Length = 215
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
+ + + M L L + TA P D
Sbjct: 19 PNREIDWHLVDDEVHQHFNDTLRGMGAFLSGRVTYQLMADFWPTADADPASTGPVADFAR 78
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLV 308
+ K + ++ LV + +L L GGA +A F+ LV
Sbjct: 79 IWRDMPKIVFSRTLQHAGWHTTIVRDLVVEDIHALKAQEGGDLALGGADLAAEFMRHDLV 138
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
D +Y +++G G P + FG+ V L Y
Sbjct: 139 DEYRVYVHPVLLGRGKRLFPETDTLTP--LRLTESRTFGNGVALLRYER 185
>gi|325970393|ref|YP_004246584.1| dCMP deaminase [Spirochaeta sp. Buddy]
gi|324025631|gb|ADY12390.1| dCMP deaminase [Spirochaeta sp. Buddy]
Length = 161
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 33/105 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM A+ S + V I+ D ++G G G P
Sbjct: 9 SWDEYFMGVAVLSSMRSK---DPSTQVGACIINADHKIVGVGY---NGFPIGVNDDEVPW 62
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ A +G + YV L PC+
Sbjct: 63 EREGAWLDTKYPYVCHAELNAILNAISSSLKGCSLYVGLFPCNEC 107
>gi|313608725|gb|EFR84550.1| ComE operon protein 2 [Listeria monocytogenes FSL F2-208]
Length = 186
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLAC 101
>gi|257456686|ref|ZP_05621876.1| dCMP deaminase [Treponema vincentii ATCC 35580]
gi|257445879|gb|EEV20932.1| dCMP deaminase [Treponema vincentii ATCC 35580]
Length = 163
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 34/109 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------TAYG 50
++D FM ++ C+I +D ++ G +
Sbjct: 10 TWDEYFMEVCRAIAKRATCDRG---RSGCVIARDNQLLVTGYVGAPRGLPHCDDVGHQFK 66
Query: 51 --------------GCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ +A G GAT Y + PC
Sbjct: 67 KVQHEDGSVSQHCVRTVHAEQNAICQAAKRGISIDGATLYCKMTPCRTC 115
>gi|238496847|ref|XP_002379659.1| DRAP deaminase, putative [Aspergillus flavus NRRL3357]
gi|220694539|gb|EED50883.1| DRAP deaminase, putative [Aspergillus flavus NRRL3357]
Length = 222
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVT-AYGGC 52
+ S A+++ L + TN V ++V D ++ G T G
Sbjct: 1 MQSPHAKYLRECLSLAEKSPPR-PTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGN 59
Query: 53 PHAEVQALEE----------------AGEEARGATAYVTLEPC 79
HAE L E R YVT+EPC
Sbjct: 60 THAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPC 102
>gi|156846411|ref|XP_001646093.1| hypothetical protein Kpol_543p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116765|gb|EDO18235.1| hypothetical protein Kpol_543p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 268
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAE 56
S +M AL+ +R + G T VAC+ V G ++ G+ G HAE
Sbjct: 6 SKHVEYMEYALKLARHALDHGET----PVACIFVDKKTGGIVSYGMNDTNNSLAGTSHAE 61
Query: 57 VQALEEAG-------EEARGATAYVTLEPCSHY 82
A++ ++ YVT+EPC
Sbjct: 62 FVAIDRIKNQFSSTFDKFEDIIVYVTVEPCIMC 94
>gi|169774581|ref|XP_001821758.1| DRAP deaminase [Aspergillus oryzae RIB40]
gi|83769621|dbj|BAE59756.1| unnamed protein product [Aspergillus oryzae]
Length = 222
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 27/103 (26%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVT-AYGGC 52
+ S A+++ L + TN V ++V D ++ G T G
Sbjct: 1 MQSPHAKYLRECLSLAEKSPPR-PTNFRVGAILVSRKEGDYKTEDDRIVSTGYTMELAGN 59
Query: 53 PHAEVQALEE----------------AGEEARGATAYVTLEPC 79
HAE L E R YVT+EPC
Sbjct: 60 THAEQCCLSNYAAVHSVPEDRVWEVLPSEPDRKLVMYVTMEPC 102
>gi|87310393|ref|ZP_01092523.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
3645]
gi|87286892|gb|EAQ78796.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM
3645]
Length = 481
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 10 FMSAALRFSRWH----VGLTSTNPSVACLIVK-DGIV--IGRGVTAYGGCPHAEVQALEE 62
M A+ R S +P V ++V+ DG + RG G HAE LE
Sbjct: 1 MMEKAIEVMRQSVQEHRPDGSPSPQVGAVLVRPDGSIETAARG-ELRDG-NHAEFTLLER 58
Query: 63 --AGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A E G + TLEPC + CA+ I+ IR V V ++D + +V+G+G+++L
Sbjct: 59 KCAAENLEGCVLFATLEPCLNRNSPKRGCARHIVGARIREVYVGIEDDNPKVAGKGIEYL 118
Query: 120 SQKGIIVD 127
+ G+ V
Sbjct: 119 RRSGVTVH 126
>gi|325955922|ref|YP_004286532.1| dCMP deaminase [Lactobacillus acidophilus 30SC]
gi|325332487|gb|ADZ06395.1| dCMP deaminase [Lactobacillus acidophilus 30SC]
gi|327182757|gb|AEA31204.1| dCMP deaminase [Lactobacillus amylovorus GRL 1118]
Length = 159
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|315037464|ref|YP_004031032.1| dCMP deaminase [Lactobacillus amylovorus GRL 1112]
gi|312275597|gb|ADQ58237.1| dCMP deaminase [Lactobacillus amylovorus GRL 1112]
Length = 159
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDDH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|255027259|ref|ZP_05299245.1| hypothetical protein LmonocytFSL_14643 [Listeria monocytogenes FSL
J2-003]
Length = 183
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLAC 101
>gi|225175841|ref|ZP_03729834.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
gi|225168765|gb|EEG77566.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1]
Length = 166
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+DA FM + L V LI+KD ++ G
Sbjct: 19 SWDAYFMEITHVVAGRSTCLRRK---VGALIIKDKRILATGYNGAPSGLAHCQDVGCIRE 75
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + AT Y T PC +
Sbjct: 76 QQQVPSGERHELCRALHAEQNAILQAALYGVSIQHATLYCTTHPCVMCAKM 126
>gi|239942817|ref|ZP_04694754.1| putative deaminase [Streptomyces roseosporus NRRL 15998]
gi|291446287|ref|ZP_06585677.1| deaminase [Streptomyces roseosporus NRRL 15998]
gi|291349234|gb|EFE76138.1| deaminase [Streptomyces roseosporus NRRL 15998]
Length = 142
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG + G HAE+ AL A E T VTLEPC
Sbjct: 18 PVGAVVLGPDGTELATGHNEREATGDPTAHAEILALRRAAEAVGEWRLTDCTLVVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 TMC 80
>gi|151946542|gb|EDN64764.1| diaminohydroxyphoshoribosylaminopyrimidine deaminase [Saccharomyces
cerevisiae YJM789]
Length = 244
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D + I+ +K H LR D IL+G GTVLAD+P L C
Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPETKTMTHYLRHHHDGILIGSGTVLADNPGLNC 89
Query: 210 RLNGLQEHSPMRII-------LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ + R I + I + V++ +E + +
Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321
IN K + + S++VEGGA V + + S +V+S+I+ +G
Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209
Query: 322 EGG 324
G
Sbjct: 210 SSG 212
>gi|75762097|ref|ZP_00742002.1| Pyrimidine Reductase [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74490415|gb|EAO53726.1| Pyrimidine Reductase [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 161
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 83 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 140
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 141 NLTLTDTKRFGQFVNLYYKVK 161
>gi|328885914|emb|CCA59153.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Streptomyces
venezuelae ATCC 10712]
Length = 268
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
RG+ L EGG + F+ + +D + L S + G + + F
Sbjct: 193 AERGLRRQLTEGGPRLLGQFVAADALDELCLTVSPTMTSGAAQRIAGGPAVAVPTRFQVA 252
Query: 342 RRDYFGSDVCLEYIG 356
+ Y
Sbjct: 253 SVLEQDGFLFTRYRR 267
>gi|313674792|ref|YP_004052788.1| cmp/dcmp deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
gi|312941490|gb|ADR20680.1| CMP/dCMP deaminase zinc-binding protein [Marivirga tractuosa DSM
4126]
Length = 138
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT---AYGGCPHAEVQALEEA 63
+M A+ ++ ++V +G + G G HAE+ A+ +
Sbjct: 4 EFWMKLAIDLAKERK------TPFGAVLVDPEGQHVS-GYNTTILDGAVAHAEINAISKI 56
Query: 64 G----EEARGATAYVTLEPCSHY 82
+ A T + T+EPC
Sbjct: 57 KQLDYDRAEELTLFTTVEPCPMC 79
>gi|257438151|ref|ZP_05613906.1| tRNA-specific adenosine deaminase [Faecalibacterium prausnitzii
A2-165]
gi|257199482|gb|EEU97766.1| tRNA-specific adenosine deaminase [Faecalibacterium prausnitzii
A2-165]
Length = 162
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V ++ ++G +I T HAE+ A++ A ++ G +VTLEPC
Sbjct: 24 PVGAVVARNGEIIAAAHNTRETEKNALHHAELLAIDAACKKLGGWRLWQCELFVTLEPCP 83
Query: 81 HYG 83
Sbjct: 84 MCS 86
>gi|46907711|ref|YP_014100.1| zinc-binding protein ComEB [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224084|ref|YP_002758191.1| ComEB protein [Listeria monocytogenes Clip81459]
gi|254824458|ref|ZP_05229459.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
J1-194]
gi|254852107|ref|ZP_05241455.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
R2-503]
gi|254931418|ref|ZP_05264777.1| zinc-binding ComEB family protein [Listeria monocytogenes HPB2262]
gi|254992215|ref|ZP_05274405.1| ComEB protein [Listeria monocytogenes FSL J2-064]
gi|255520859|ref|ZP_05388096.1| ComEB protein [Listeria monocytogenes FSL J1-175]
gi|300764852|ref|ZP_07074842.1| hypothetical protein LMHG_12881 [Listeria monocytogenes FSL N1-017]
gi|46880980|gb|AAT04277.1| zinc-binding, ComEB family protein [Listeria monocytogenes serotype
4b str. F2365]
gi|225876546|emb|CAS05255.1| Putative ComEB protein [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258605409|gb|EEW18017.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
R2-503]
gi|293582968|gb|EFF95000.1| zinc-binding ComEB family protein [Listeria monocytogenes HPB2262]
gi|293593695|gb|EFG01456.1| zinc-binding ComEB family protein [Listeria monocytogenes FSL
J1-194]
gi|300514528|gb|EFK41585.1| hypothetical protein LMHG_12881 [Listeria monocytogenes FSL N1-017]
gi|328465524|gb|EGF36753.1| ComEB protein [Listeria monocytogenes 1816]
gi|328474941|gb|EGF45737.1| ComEB protein [Listeria monocytogenes 220]
gi|332311925|gb|EGJ25020.1| ComE operon protein [Listeria monocytogenes str. Scott A]
Length = 186
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLAC 101
>gi|53713372|ref|YP_099364.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacteroides fragilis YCH46]
gi|52216237|dbj|BAD48830.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacteroides fragilis YCH46]
Length = 225
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
+ + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 140 AMELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISRME 199
Query: 334 -LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 200 CNPYKLKLESVEQWETDIVWLRYKIK 225
>gi|269793794|ref|YP_003313249.1| tRNA-adenosine deaminase [Sanguibacter keddieii DSM 10542]
gi|269095979|gb|ACZ20415.1| tRNA-adenosine deaminase [Sanguibacter keddieii DSM 10542]
Length = 147
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65
M A+ +R + T P A ++ DG VIGRG A HAEV AL EA +
Sbjct: 1 MGLAIDEARLAL-ETGDVPVGAVVVGPDGTVIGRGHNAREAAGDPTAHAEVLALREAAQT 59
Query: 66 ----EARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 60 LGEWRLTGCTLVVTLEPCVMC 80
>gi|284031090|ref|YP_003381021.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283810383|gb|ADB32222.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 264
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + GVT ++ G + + + + LVD + L S V+G G P+ + L
Sbjct: 172 ALRRMREQLGVTCVVSTAGGGLNGALLRADLVDELHLLVSPSVVGGLGTPTAFDGPQLGD 231
Query: 337 NFMCVRRDYF------GSDVCLEY 354
+ R + L Y
Sbjct: 232 DEAPRRLRLLAAHAETDGMLWLRY 255
>gi|313633202|gb|EFS00080.1| ComE operon protein 2 [Listeria seeligeri FSL N1-067]
gi|313637784|gb|EFS03135.1| ComE operon protein 2 [Listeria seeligeri FSL S4-171]
Length = 186
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDQAELYVTHFPCLAC 101
>gi|148974141|ref|ZP_01811674.1| hypothetical protein VSWAT3_13477 [Vibrionales bacterium SWAT-3]
gi|145965838|gb|EDK31086.1| hypothetical protein VSWAT3_13477 [Vibrionales bacterium SWAT-3]
Length = 89
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G+ +L ++GG + +F+ LVD +I+ +V+G G E
Sbjct: 10 QIIEDLNSKGLNNLYIDGGVTI-QNFLKEDLVDELIISTLPVVLGGGA--PLFGELVSPL 66
Query: 337 NFMCVRRDYFGSDVC-LEYIGKN 358
+F + ++ Y+ K
Sbjct: 67 DFTLKSVTTYLDEIVTTHYLRKR 89
>gi|114570085|ref|YP_756765.1| deaminase-reductase domain-containing protein [Maricaulis maris
MCS10]
gi|114340547|gb|ABI65827.1| bifunctional deaminase-reductase domain protein [Maricaulis maris
MCS10]
Length = 191
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 32/213 (15%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TLK+A S D I +A S ITG S+ VH +RA DA+L GIGT+LADDP LT
Sbjct: 7 PLVTLKLATSLDGKIALANGVSQWITGPESRAVVHRMRAAHDAVLTGIGTILADDPRLTA 66
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R G E P II+D + +++ K + +I
Sbjct: 67 RPEGGCERQPDVIIMDSQGRTPATAQVFKGGDRSVTLIPHR------------------- 107
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-- 327
+G +++E GA +A + I + LVD I +R+ +V+G G+P+
Sbjct: 108 ---------DLERAMKGCERVMIEAGARIAAAAIQAGLVDRIEWFRAPMVLGGDGLPALA 158
Query: 328 --PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
LE F V G+D+ Y
Sbjct: 159 ALGLETLDKAPIFRRVGVIERGADLQETYERNR 191
>gi|60681625|ref|YP_211769.1| putative RibD-family protein [Bacteroides fragilis NCTC 9343]
gi|60493059|emb|CAH07840.1| putative RibD-family protein [Bacteroides fragilis NCTC 9343]
Length = 225
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
+ + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 140 AMELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISRME 199
Query: 334 -LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 200 CNPYKLKLESVEQWETDIVWLRYKIK 225
>gi|307941692|ref|ZP_07657047.1| CMP/dCMP deaminase zinc-binding [Roseibium sp. TrichSKD4]
gi|307775300|gb|EFO34506.1| CMP/dCMP deaminase zinc-binding [Roseibium sp. TrichSKD4]
Length = 262
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V+DG V+ + HAEV + A + YVTLEPC
Sbjct: 135 PVGAVLVRDGKVLAKDGNRTLELNDPTAHAEVLVIRAACNTLASQRLPECDLYVTLEPCP 194
Query: 81 HY 82
Sbjct: 195 MC 196
>gi|313888782|ref|ZP_07822443.1| putative ComE operon protein 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845151|gb|EFR32551.1| putative ComE operon protein 2 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 139
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV---------------TA 48
S+D FM + + V C++V D +I G T
Sbjct: 4 SWDEYFMEITEMVATRSTCDRAF---VGCVLVNSDNRIISTGYNGSVTGNPHCDEVGHTM 60
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G RGA AYVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGISVRGAKAYVTHFPCLNC 101
>gi|283851292|ref|ZP_06368574.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
gi|283573242|gb|EFC21220.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
Length = 153
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM A + L V + VKD ++ G
Sbjct: 9 EYFMRIAYLVAERSTCLRRK---VGAVAVKDRRILATGYNGSPTGTAHCLDIGCLREEMG 65
Query: 47 ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + + G GA Y T +PC +
Sbjct: 66 IPSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLICTKM 113
>gi|260463024|ref|ZP_05811227.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259031145|gb|EEW32418.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 232
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
G+ LL+EGGA + SF + LVD + L + + G +E
Sbjct: 152 ELGIRRLLLEGGAGINGSFFAAGLVDELSLLVAPAIDGRAANQGFVE 198
>gi|257138794|ref|ZP_05587056.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis E264]
Length = 187
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D R+M + + + V +IV+ VI RG G HAE+ AL
Sbjct: 20 ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 77
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 78 RAAARALRNYRMPGCELYVTLEPCLMCSGAIM 109
>gi|159028962|emb|CAO87423.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 178
Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----- 55
++D F+ A + L V +IVKD V+ G + G H
Sbjct: 7 KRPTWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPSGTVHCTAQGF 63
Query: 56 ------------EV--QALE----------EAGEEARGATAYVTLEPCSHY 82
E+ +A+ + G +GA+ YVTLEPC
Sbjct: 64 CYPGLGTCRESGEIPSRAIHAEANAIAQAAKHGISTQGASIYVTLEPCISC 114
>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
Length = 522
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 5 SFDARFMSAA--LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58
D R+M A L G + ++V++G +G HAE+
Sbjct: 378 EEDQRWMRRALALAREAARRGEV----PIGAVVVREGEELGASANAVEARVNATAHAELL 433
Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHY 82
AL A E GAT YVTLEPC
Sbjct: 434 ALRAAQERAGEKVLPGATLYVTLEPCPMC 462
>gi|332703476|ref|ZP_08423564.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
str. Walvis Bay]
gi|332553625|gb|EGJ50669.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
str. Walvis Bay]
Length = 152
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM A + L V + VKD + G
Sbjct: 9 EYFMKIAYLVAERSTCLRRK---VGAIAVKDKRIAATGYNGVPSGLAHCEDVGCLREKMG 65
Query: 47 ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G + GA+ Y T +PC +
Sbjct: 66 IPSGQRHELCRGLHAEQNVIIQAATHGVDISGASIYCTTQPCLICTKM 113
>gi|57651981|ref|YP_186485.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus COL]
gi|87160601|ref|YP_494243.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195398|ref|YP_500202.1| hypothetical protein SAOUHSC_01692 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268072|ref|YP_001247015.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH9]
gi|150394141|ref|YP_001316816.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH1]
gi|221141140|ref|ZP_03565633.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315374|ref|ZP_04838587.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|269203216|ref|YP_003282485.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ED98]
gi|284024647|ref|ZP_06379045.1| competence protein ComEB [Staphylococcus aureus subsp. aureus
132]
gi|57286167|gb|AAW38261.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus COL]
gi|87126575|gb|ABD21089.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202956|gb|ABD30766.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147741141|gb|ABQ49439.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH9]
gi|149946593|gb|ABR52529.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus JH1]
gi|262075506|gb|ACY11479.1| comE operon protein 2 [Staphylococcus aureus subsp. aureus ED98]
gi|302333265|gb|ADL23458.1| deoxycytidylate deaminase ComEB [Staphylococcus aureus subsp.
aureus JKD6159]
gi|315129867|gb|EFT85857.1| possible competence protein ComEB [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198714|gb|EFU29042.1| possible competence protein ComEB [Staphylococcus aureus subsp.
aureus CGS01]
Length = 143
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 25/94 (26%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------------ 51
M+ + + T SV IVKD +I G + G
Sbjct: 1 MAQSHLLALRS---TCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIR 57
Query: 52 CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G GAT YVT PC +
Sbjct: 58 TIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNC 91
>gi|325117380|emb|CBZ52932.1| Cytidine and deoxycytidylate deaminase family protein, related
[Neospora caninum Liverpool]
Length = 348
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 1 MPV-SSFDAR-FMSAALRFSRWHV--GLTSTNPSVACLIVKD--GIVIGRGVTA----YG 50
M + + D R FMSAAL +R + G V C++V V+ +G A
Sbjct: 171 MDIYTEADKRLFMSAALEEARSALQEGEV----PVGCVLVDSRTRQVVAKGRNATNRTKN 226
Query: 51 GCPHAEVQALE--------------EAGEEARGATAYVTLEPCSHYGRSPPC 88
H E++AL+ EA + +VT EPC + C
Sbjct: 227 ATRHCELEALDAYMARFPPTRIGDSEAPVDMSSIDLFVTCEPCVMCAVALQC 278
>gi|301098687|ref|XP_002898436.1| cytosine deaminase [Phytophthora infestans T30-4]
gi|262105207|gb|EEY63259.1| cytosine deaminase [Phytophthora infestans T30-4]
Length = 145
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAGE 65
F+ AA+ ++ + + ++ D + RG G HAE+ LE AG
Sbjct: 4 FLQAAIDEAKLGLSEGGI--PIGSVLEIDDKIAARGHNRRVQRGSAVLHAEMDCLENAGR 61
Query: 66 ----EARGATAYVTLEPCSHYG 83
+ AT Y TL PC
Sbjct: 62 LTAADYARATLYSTLSPCDMCS 83
>gi|228951140|ref|ZP_04113256.1| Enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228808550|gb|EEM55053.1| Enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 173
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGNLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|229077962|ref|ZP_04210571.1| Enzyme [Bacillus cereus Rock4-2]
gi|228705300|gb|EEL57677.1| Enzyme [Bacillus cereus Rock4-2]
Length = 179
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 114 IWMVGGGNLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|315652209|ref|ZP_07905204.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
gi|315485515|gb|EFU75902.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986]
Length = 164
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
++D F+ A ++ N V IV D ++ G +
Sbjct: 10 NWDEYFIGVAKLSAKRSK---DPNTQVGACIVSEDNKILSMGYNGFPRGCSDEEFPWGKD 66
Query: 53 --------------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 67 LEISDPYNAKYLYSTHSELNAILNYRGGSLEGSKIYVTLFPCNEC 111
>gi|229177174|ref|ZP_04304563.1| Enzyme [Bacillus cereus 172560W]
gi|228606355|gb|EEK63787.1| Enzyme [Bacillus cereus 172560W]
Length = 173
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|206967533|ref|ZP_03228489.1| dihydrofolate reductase family protein [Bacillus cereus AH1134]
gi|229068334|ref|ZP_04201637.1| Enzyme [Bacillus cereus F65185]
gi|206736453|gb|EDZ53600.1| dihydrofolate reductase family protein [Bacillus cereus AH1134]
gi|228714795|gb|EEL66667.1| Enzyme [Bacillus cereus F65185]
Length = 173
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|312863405|ref|ZP_07723643.1| putative ComE operon protein 2 [Streptococcus vestibularis F0396]
gi|322516047|ref|ZP_08068984.1| competence protein comEB [Streptococcus vestibularis ATCC 49124]
gi|311100941|gb|EFQ59146.1| putative ComE operon protein 2 [Streptococcus vestibularis F0396]
gi|322125462|gb|EFX96808.1| competence protein comEB [Streptococcus vestibularis ATCC 49124]
Length = 151
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSETDNCNEVGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 102
>gi|227355681|ref|ZP_03840074.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
gi|227164000|gb|EEI48897.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906]
Length = 190
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ ++T L +G L ++GG V SF+N L+D +I+ R I++G G P E
Sbjct: 110 QDIITELNAKGFNELYIDGGVTV-QSFLNEDLIDQMIITRFPILLGG-GTPLF-GELKQP 166
Query: 336 KNFMCVRRDYFGSDVC-LEYIGKN 358
NF ++ + ++ Y+
Sbjct: 167 LNFKVIKNEVLLENLVQTTYLRDK 190
>gi|115388877|ref|XP_001211944.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196028|gb|EAU37728.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 624
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
+ + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTV
Sbjct: 386 PKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTV 445
Query: 201 LADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIK------TALLAPVII 247
LAD+P L CR + P +++DP + + + AP ++
Sbjct: 446 LADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVV 505
Query: 248 VTENDDPVLALAFRKKNI--------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+ K + +L L G+ S+++EGG V
Sbjct: 506 VSPGAQIDPQKLMMLKGYGGDFLRIVEYNQNWRLRWEGILRALASEGIKSVMIEGGGTVL 565
Query: 300 HSFIN---SRLVDSIILYRSQIVIGEGGI 325
+N + +D+II+ + +G GG+
Sbjct: 566 SELLNPEYTEFIDTIIVTVAPTYLGSGGV 594
>gi|20806677|ref|NP_621848.1| deoxycytidylate deaminase [Thermoanaerobacter tengcongensis MB4]
gi|20515128|gb|AAM23452.1| Deoxycytidylate deaminase [Thermoanaerobacter tengcongensis MB4]
Length = 168
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
S+D FM + + T V ++V D +I G G P
Sbjct: 25 SWDEYFMQI-VDVVKTR--STCIRRQVGAILVVDKHIISTGYNGPPTGLPHCEETGCLRD 81
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G +GAT YV+ PC +
Sbjct: 82 QLGIPPGERPELCRGVHAEQNAIIQAALHGVSTKGATLYVSASPCVICAKM 132
>gi|229095301|ref|ZP_04226293.1| Enzyme [Bacillus cereus Rock3-29]
gi|229114250|ref|ZP_04243671.1| Enzyme [Bacillus cereus Rock1-3]
gi|228669270|gb|EEL24691.1| Enzyme [Bacillus cereus Rock1-3]
gi|228688160|gb|EEL42046.1| Enzyme [Bacillus cereus Rock3-29]
Length = 173
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P + E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQAKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
N FG V L Y K
Sbjct: 153 NLTLTDTKRFGQFVNLYYKVK 173
>gi|296501407|ref|YP_003663107.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
gi|296322459|gb|ADH05387.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
Length = 173
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|229148987|ref|ZP_04277232.1| Enzyme [Bacillus cereus m1550]
gi|228634527|gb|EEK91111.1| Enzyme [Bacillus cereus m1550]
Length = 179
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 114 IWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|30018833|ref|NP_830464.1| pyrimidine reductase [Bacillus cereus ATCC 14579]
gi|229042511|ref|ZP_04190256.1| Enzyme [Bacillus cereus AH676]
gi|229126081|ref|ZP_04255103.1| Enzyme [Bacillus cereus BDRD-Cer4]
gi|29894375|gb|AAP07665.1| Pyrimidine Reductase [Bacillus cereus ATCC 14579]
gi|228657403|gb|EEL13219.1| Enzyme [Bacillus cereus BDRD-Cer4]
gi|228726864|gb|EEL78076.1| Enzyme [Bacillus cereus AH676]
Length = 173
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|47568101|ref|ZP_00238806.1| RibD C-terminal domain [Bacillus cereus G9241]
gi|47555255|gb|EAL13601.1| RibD C-terminal domain [Bacillus cereus G9241]
Length = 173
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 108 IWMVGGGELLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|218961251|ref|YP_001741026.1| Cytosine/adenosine deaminase [Candidatus Cloacamonas
acidaminovorans]
gi|167729908|emb|CAO80820.1| Cytosine/adenosine deaminase [Candidatus Cloacamonas
acidaminovorans]
Length = 155
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59
S FM A+ ++ T V L+VK+ +I + H E
Sbjct: 6 SQNHYLFMQEAIAEAKKA--FTEDEIPVGALLVKNNTIILKEHNRSRQLANPLAHCEKLL 63
Query: 60 LEEAGEE----ARGATAYVTLEPCSHY 82
+++ T YVTLEPC
Sbjct: 64 IDKILTSEPGFLYDYTLYVTLEPCLMC 90
>gi|157135264|ref|XP_001656575.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2, putative
[Aedes aegypti]
gi|108870242|gb|EAT34467.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2, putative
[Aedes aegypti]
Length = 171
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 13/122 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
FM AL +R L V C+ V G +I G H E +++
Sbjct: 13 HFMEQALEQARKAEQL--KEVPVGCVFVYRGEIIANGCNLVNETKNATRHVEFICIDQVL 70
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E Y H + + + +VR G + G
Sbjct: 71 E-------YCKNRSLKHEDVFREVTVVVTVEPCIMCAAALIELNVREVIYGCKNDRFGGC 123
Query: 125 IV 126
V
Sbjct: 124 TV 125
>gi|94991124|ref|YP_599224.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10270]
gi|94544632|gb|ABF34680.1| ComE operon protein 2 [Streptococcus pyogenes MGAS10270]
Length = 170
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGG-------- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 25 YFMANAELISKRSTCDRAF---VGAVLVKDNRIIATGYNGGVSATDNCNEAGHYMEDGHC 81
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G YVT PC +
Sbjct: 82 IRTVHAEMNALIQCAKEGISTDGTEIYVTHFPCINC 117
>gi|254390387|ref|ZP_05005604.1| deaminase [Streptomyces clavuligerus ATCC 27064]
gi|197704091|gb|EDY49903.1| deaminase [Streptomyces clavuligerus ATCC 27064]
Length = 142
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V +++ DG + G HAEV A+ A G T VTLEPC
Sbjct: 18 PVGAVVLAADGTRLATGHNERELTGDPTAHAEVLAIRRAARRIGGWRLSDCTLVVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 TMC 80
>gi|320353809|ref|YP_004195148.1| tRNA-adenosine deaminase [Desulfobulbus propionicus DSM 2032]
gi|320122311|gb|ADW17857.1| tRNA-adenosine deaminase [Desulfobulbus propionicus DSM 2032]
Length = 146
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACL-IVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63
M AL +R G V + I G ++ G HAE+ L A
Sbjct: 4 MRRALVQARQAAEAGEV----PVGAVAIDAQGAILAEAGNNCIGASDPSGHAEMVVLRRA 59
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G T YVTLEPC
Sbjct: 60 AQVVGNYRLPGLTLYVTLEPCPMC 83
>gi|239989276|ref|ZP_04709940.1| putative deaminase [Streptomyces roseosporus NRRL 11379]
Length = 174
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG + G HAE+ AL A E T VTLEPC
Sbjct: 50 PVGAVVLGPDGTELATGHNEREATGDPTAHAEILALRRAAEAVGEWRLTDCTLVVTLEPC 109
Query: 80 SHY 82
+
Sbjct: 110 TMC 112
>gi|271967123|ref|YP_003341319.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270510298|gb|ACZ88576.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 187
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GGA +A + LVD L+ V+G G P + + + FG+ V L
Sbjct: 124 GGANLASQAFKAGLVDECQLFVWPTVLGGGKPALPTDARA---DLELIDERRFGNGVVLL 180
Query: 353 EYIG 356
Y
Sbjct: 181 RYRP 184
>gi|219127140|ref|XP_002183799.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404522|gb|EEC44468.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 160
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTA----YGGCPHA 55
P++ FM+ AL S G P + L+ V ++G Y HA
Sbjct: 4 PINVIHEHFMTMALEQS-IVAGKCGEVP-IGALVPSVHRLQILGSSHNQVEQKYDASAHA 61
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E+ A+ +A R T Y TLEPC
Sbjct: 62 ELLAMRQAARRIRNWRLQSCTLYSTLEPCVVC 93
>gi|298207386|ref|YP_003715565.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
atlanticus HTCC2559]
gi|83850022|gb|EAP87890.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter
atlanticus HTCC2559]
Length = 143
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V LIVKD ++I G G P
Sbjct: 10 DKAYLRIAREWGQLSHCKRK---QVGALIVKDRMIISDGY---NGTPTGFENYCEDDEGY 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + R AT Y+T+ PC
Sbjct: 64 TKWYVLHAEANAILKVAGSTQSCRDATLYITMSPCKDCS 102
>gi|325661942|ref|ZP_08150562.1| hypothetical protein HMPREF0490_01300 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471794|gb|EGC75012.1| hypothetical protein HMPREF0490_01300 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 177
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 1/126 (0%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P + N + K+ + RD L+T L + +
Sbjct: 53 WKTYHQIVTELSPEEWIYHNLKTYVFTHKEHKSTKNVQFIDRDPADLITSLREKDGRDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + + L+D + ++G GI E ++ +
Sbjct: 113 ICGGANLIQQMVKEDLIDCYYITIIPTILGS-GIRLFDNLAGRELKLKLIKTQTYNGMTD 171
Query: 352 LEYIGK 357
L Y+ +
Sbjct: 172 LVYVRR 177
>gi|321252394|ref|XP_003192392.1| dCMP deaminase [Cryptococcus gattii WM276]
gi|317458860|gb|ADV20605.1| dCMP deaminase, putative [Cryptococcus gattii WM276]
Length = 327
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 32/113 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------- 48
+D FM+ A S + V L+V+ ++ G
Sbjct: 180 WDTYFMTLASLASERSNCMKR---RVGALLVRSKRILSTGYNGTPRGTRNCNQGGCSRCN 236
Query: 49 ---YGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCA 89
GG HAE AL EAG E G + Y PC
Sbjct: 237 GSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLRCSVKIVQC 289
>gi|270284659|ref|ZP_05966459.2| cytidine/deoxycytidylate deaminase family protein [Bifidobacterium
gallicum DSM 20093]
gi|270276606|gb|EFA22460.1| cytidine/deoxycytidylate deaminase family protein [Bifidobacterium
gallicum DSM 20093]
Length = 170
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+ M +A+ + P AC++ G VIGRG HAE++A+ EA
Sbjct: 25 EQAMESAIAQALQAKQH-GDVPIGACVLDAGGRVIGRGHNMRERNLDPLAHAEIEAMREA 83
Query: 64 -----GEEARGATAYVTLEPCSHYGRSP 86
T VTLEPC +
Sbjct: 84 AATLGSWNLEDCTLVVTLEPCPMCAGAC 111
>gi|207739573|ref|YP_002257966.1| hypothetical protein RSIPO_04273 [Ralstonia solanacearum IPO1609]
gi|206592953|emb|CAQ59859.1| putative 3.5.4.25 protein [Ralstonia solanacearum IPO1609]
Length = 242
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
I L A S D + A + ++ + RAQSDAI VG T+ AD+P LT R
Sbjct: 2 RIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTVR 61
Query: 211 LNGLQEHSPMRIILDP--------HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
L R + L ++ + +++ L +
Sbjct: 62 EPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYAG 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
I + + +L RGV L VEGG V F++ + D L + +G
Sbjct: 122 LACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVGR 181
Query: 323 GGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354
G + + +F V R G ++Y
Sbjct: 182 AGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 217
>gi|83748799|ref|ZP_00945813.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
gi|83724552|gb|EAP71716.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551]
Length = 256
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 12/216 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
I L A S D + A + ++ + RAQSDAI VG T+ AD+P LT R
Sbjct: 16 RIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTVR 75
Query: 211 LNGLQEHSPMRIILDP--------HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
L R + L ++ + +++ L +
Sbjct: 76 EPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYAG 135
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
I + + +L RGV L VEGG V F++ + D L + +G
Sbjct: 136 LACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVGR 195
Query: 323 GGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354
G + + +F V R G ++Y
Sbjct: 196 AGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 231
>gi|299821813|ref|ZP_07053701.1| riboflavin biosynthesis protein RibD domain protein [Listeria grayi
DSM 20601]
gi|299817478|gb|EFI84714.1| riboflavin biosynthesis protein RibD domain protein [Listeria grayi
DSM 20601]
Length = 175
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + F+ +++D ++ + I++G+G PL + FG
Sbjct: 107 IWLVGGADLIKQFLKEKVIDEYVITVAPILLGKG---IPLFDVASSIGLTLKAVSQFGQF 163
Query: 350 VCLEYIGKNL 359
L Y +
Sbjct: 164 AQLTYHNQEE 173
>gi|126739257|ref|ZP_01754951.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter sp. SK209-2-6]
gi|126719874|gb|EBA16582.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter sp. SK209-2-6]
Length = 154
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 1 MPVS-SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGC 52
M S +M+ AL +R G V +++ G V+ R
Sbjct: 1 MKQSGPSFKSYMNLALDEARAAARRGEV----PVGAVLINSKGDVVARAGNRTRELNDPT 56
Query: 53 PHAEVQALEEAG-----EEARGATAYVTLEP 78
HAE+ L E E G YVTLEP
Sbjct: 57 AHAEILVLREGCKAIGSERLMGYDLYVTLEP 87
>gi|24667298|ref|NP_649197.1| CG6951, isoform A [Drosophila melanogaster]
gi|24667302|ref|NP_730502.1| CG6951, isoform B [Drosophila melanogaster]
gi|9296958|sp|Q9VWA2|DCTD_DROME RecName: Full=Probable deoxycytidylate deaminase; AltName:
Full=dCMP deaminase
gi|7293676|gb|AAF49046.1| CG6951, isoform A [Drosophila melanogaster]
gi|23093067|gb|AAN11625.1| CG6951, isoform B [Drosophila melanogaster]
gi|41058187|gb|AAR99137.1| RE06943p [Drosophila melanogaster]
gi|220950846|gb|ACL87966.1| CG6951-PA [synthetic construct]
gi|220959594|gb|ACL92340.1| CG6951-PA [synthetic construct]
Length = 203
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FM+ +L ++ V IV ++ G G P
Sbjct: 28 WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGY---NGFPRNCSDDVFPWS 81
Query: 54 --------------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 82 KAKKGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRLYTTLFPCNEC 131
>gi|88807138|ref|ZP_01122650.1| RibD/ribG C-terminal domain [Synechococcus sp. WH 7805]
gi|88788352|gb|EAR19507.1| RibD/ribG C-terminal domain [Synechococcus sp. WH 7805]
Length = 228
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 74/225 (32%), Gaps = 7/225 (3%)
Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205
+ ++ + L +AVS D + G + G + + A SD L+G GT+ A
Sbjct: 1 MTLQTTVRLVLAVSLDGRLAYPQGGPSQLGGAGDRKALEEALAWSDGALIGAGTLRAHRS 60
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ L E P L + S+ L P + K
Sbjct: 61 SCLIHAHDLLEQRQAAC-RSPQPDLFVVSRQADFPLHWPFFQQPFARYLLTPGGGGAKGF 119
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE--- 322
N Y + L L RG + ++ GGA + S + VD + L ++G
Sbjct: 120 NDGYPLAASWTESLASLAARGWSKFVLLGGAGLCESMLADDAVDELQLTLCPRLLGGPFC 179
Query: 323 ---GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364
P+ E ++ G L + +N ++ L
Sbjct: 180 WVPSLAPALPENLAAADAWLLEHSQPLGGGELLVHYRRNRSIRSL 224
>gi|296134383|ref|YP_003641630.1| CMP/dCMP deaminase zinc-binding protein [Thermincola sp. JR]
gi|296032961|gb|ADG83729.1| CMP/dCMP deaminase zinc-binding protein [Thermincola potens JR]
Length = 147
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 34/115 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M S D FM + L V +IV+D ++ G
Sbjct: 1 MRPSWQD-YFMQITDVVATRSTCLRRK---VGAVIVRDNRILASGYNGPPRGLRHCDETG 56
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G +G T Y+T +PC +
Sbjct: 57 CLRDKLNIPSGERHELCRGLHAEQNVIIQAAMHGINIQGGTFYITHQPCILCAKM 111
>gi|293115762|ref|ZP_05792940.2| guanine deaminase [Butyrivibrio crossotus DSM 2876]
gi|292808437|gb|EFF67642.1| guanine deaminase [Butyrivibrio crossotus DSM 2876]
Length = 194
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGR-GV---TAYGGCPHAEVQALE 61
D ++ A+ SR N C++V DG +I G T HAE +E
Sbjct: 39 DEYYLEKAIEVSRKSR--AGGNTPFGCVLVDGDGEIILEQGNVEITEKRCTGHAETVIME 96
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
A + T Y T EPC
Sbjct: 97 RASKLYDKKFLWNCTLYTTCEPCPMC 122
>gi|229131593|ref|ZP_04260475.1| Enzyme [Bacillus cereus BDRD-ST196]
gi|228651819|gb|EEL07774.1| Enzyme [Bacillus cereus BDRD-ST196]
Length = 174
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + GG ++ F + L+D ++ + ++G G+P +E E
Sbjct: 95 EFTKRLKEQEGPKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLF-KEKNPEI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
+ FG V L Y K+
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVKS 174
>gi|242278132|ref|YP_002990261.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
gi|242121026|gb|ACS78722.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
Length = 151
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 36/115 (31%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
MP FM A + V + V D ++ G G
Sbjct: 5 MPWPD---YFMRIAHLVAERATCTRRK---VGAVAVLDKRILASGYNGPPSGTAHCADVG 58
Query: 54 --------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + + G +GA Y T +PC +
Sbjct: 59 CIREKMGVPSGERHELCRGLHAEQNVIIQCATHGVSMKGAEIYCTTQPCLICTKM 113
>gi|156040950|ref|XP_001587461.1| hypothetical protein SS1G_11453 [Sclerotinia sclerotiorum 1980]
gi|154695837|gb|EDN95575.1| hypothetical protein SS1G_11453 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 245
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT----AYGGCPHAEVQ 58
+ FM AL + + T+ P V C++V V+ RG+ +Y G HAE
Sbjct: 25 NTHIFFMGEALAMANLAL-NTNETP-VGCVLVDPVLKKVVARGMNATNRSYNGTRHAEFI 82
Query: 59 ALEE 62
A++E
Sbjct: 83 AIDE 86
>gi|237726205|ref|ZP_04556686.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434731|gb|EEO44808.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 225
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
+ + + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 138 PQAMELLCEHFGVECLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKGQTAVFDGISR 197
Query: 334 ---LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 198 VECNPYKLKLESVEQWEADIVWLRYKVK 225
>gi|255930967|ref|XP_002557040.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581659|emb|CAP79769.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 277
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIV 319
+LL L G+ S+++EGG V S ++ + L+DS+I+ +
Sbjct: 172 MVRTHTGRHQIVWPELLVTLKSNGLRSVMIEGGGHVIKSLLSPQYMSLLDSVIVTIAPTW 231
Query: 320 IGEGG-IPSP------LEEGYLEKNFMCVRRDYFGSDVCL 352
+GEGG + SP V+ FG DV L
Sbjct: 232 LGEGGVVVSPDRRFDDDGNAISAARLKNVKWYPFGEDVVL 271
>gi|227529514|ref|ZP_03959563.1| tRNA-adenosine deaminase [Lactobacillus vaginalis ATCC 49540]
gi|227350599|gb|EEJ40890.1| tRNA-adenosine deaminase [Lactobacillus vaginalis ATCC 49540]
Length = 173
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
+ ++ G +IGRG HAE+ A+ EA YVTLEPC
Sbjct: 33 PIGAVVTYQGKIIGRGHNMREKFQDVTYHAEMLAIMEACSYLHSWRLEDCDLYVTLEPCM 92
Query: 81 HYG 83
Sbjct: 93 MCS 95
>gi|258545205|ref|ZP_05705439.1| tRNA-specific adenosine deaminase [Cardiobacterium hominis ATCC
15826]
gi|258519557|gb|EEV88416.1| tRNA-specific adenosine deaminase [Cardiobacterium hominis ATCC
15826]
Length = 151
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCS 80
+ ++V +G +I + HAE+ AL G+ RG + YVTLEPC
Sbjct: 24 PIGAILVANGEIIASAHNRTVSDHDPTAHAEILALRAGGQALGNHRMRGVSLYVTLEPCI 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|294658696|ref|XP_002770827.1| DEHA2F15488p [Debaryomyces hansenii CBS767]
gi|202953318|emb|CAR66350.1| DEHA2F15488p [Debaryomyces hansenii]
Length = 147
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALE 61
D + M A ++ G+ P LI +DG ++GRG H E+ LE
Sbjct: 4 DDKQGMKIAFEEAKKKGGV----PIGGALIHEDGTILGRGHNMRFQSSSATLHGEISTLE 59
Query: 62 EAGEEARG-----ATAYVTLEPCSHYGRSPPCA 89
AG +G T Y TL PC +
Sbjct: 60 NAG-RLKGSIYKKCTMYTTLSPCHMCTGACIMY 91
>gi|83767090|dbj|BAE57230.1| unnamed protein product [Aspergillus oryzae]
Length = 111
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-- 53
++D FM A ++ + V C++V++ VI G GCP
Sbjct: 14 NWDQYFMQLASLAAQRSNCMKR---RVGCVLVRECRVISTGYNGTPRHLRNCNEAGCPRC 70
Query: 54 ----------------HAEVQALEEAGEE--ARGATAYVT 75
HAE AL EAG E G Y
Sbjct: 71 NRGEGGGVGLSTCLCLHAEENALLEAGRERIREGTILYCD 110
>gi|166368807|ref|YP_001661080.1| zinc-binding CMP/dCMP deaminase [Microcystis aeruginosa NIES-843]
gi|166091180|dbj|BAG05888.1| zinc-binding CMP/dCMP deaminase [Microcystis aeruginosa NIES-843]
Length = 178
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----- 55
++D F+ A + L V +IVKD V+ G + G H
Sbjct: 7 KRPTWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPSGTVHCTAQGF 63
Query: 56 ------------EV--QALE----------EAGEEARGATAYVTLEPCSHY 82
E+ +A+ + G +GA+ YVTLEPC
Sbjct: 64 CYPGLGTCRESGEIPSRAIHAEANAIAQAAKHGISTQGASIYVTLEPCISC 114
>gi|152112358|sp|Q92G39|Y1285_RICCN RecName: Full=Uncharacterized deaminase RC1285
Length = 153
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL+ ++ N V ++V +I HAE+ A+ EA
Sbjct: 1 MEQALKQAKIAF---DKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEA 57
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 58 CNLISSKNLNDYDIYVTLEPCAMC 81
>gi|38677840|emb|CAE82258.1| putative cytosine deaminase [Candida albicans]
Length = 150
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAY----GGCPHAEV 57
++ D + + AL ++ + C+I DG V+G+G H E+
Sbjct: 1 MTFDDKKGLQIALDQAKKSYSEGGI--PIGSCIISSDGTVLGQGHNERIQKHSAILHGEM 58
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHY 82
ALE AG + T Y TL PCS
Sbjct: 59 SALENAGRLPGKTYKDCTIYTTLSPCSMC 87
>gi|21222441|ref|NP_628220.1| deaminase [Streptomyces coelicolor A3(2)]
gi|289770376|ref|ZP_06529754.1| deaminase [Streptomyces lividans TK24]
gi|13122131|emb|CAC32309.1| putative deaminase [Streptomyces coelicolor A3(2)]
gi|289700575|gb|EFD68004.1| deaminase [Streptomyces lividans TK24]
Length = 143
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGI-VIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEP 78
V +++ DG V+ G HAEV A+ A G T VTLEP
Sbjct: 18 PVGAVVLAPDGRTVLSAGHNEREATGDPTAHAEVLAIRRAAGELGEWRLSGCTLVVTLEP 77
Query: 79 CSHY 82
C+
Sbjct: 78 CTMC 81
>gi|323435986|ref|ZP_01049493.2| dCMP deaminase [Dokdonia donghaensis MED134]
gi|321496301|gb|EAQ39465.2| dCMP deaminase [Dokdonia donghaensis MED134]
Length = 142
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V +IVKD ++I G G P
Sbjct: 9 DIAYLRMAREWGKLSYCNRK---QVGAIIVKDKMIISDGY---NGTPTGFENVCEDEENN 62
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 63 TKWYVLHAEANAILKVASSTQSCHGATLYITLSPCKDCS 101
>gi|332705458|ref|ZP_08425536.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
gi|332355818|gb|EGJ35280.1| cytosine/adenosine deaminase [Lyngbya majuscula 3L]
Length = 147
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGEE 66
M AA + ++ + ++VK G ++GRG G H E+ ALE+ G +
Sbjct: 1 MLAAFKEAQMGFQEGGI--PIGSVVVKGGEIVGRGHNRRVQKGSAILHGEMDALEDVGSQ 58
Query: 67 A----RGATAYVTLEPCSHY 82
+ Y TL PCS
Sbjct: 59 PASFYQDVVLYTTLSPCSMC 78
>gi|298249131|ref|ZP_06972935.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297547135|gb|EFH81002.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 197
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 16/206 (7%)
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
L++ +S D + ++ + + + + D L R
Sbjct: 6 LQMQMSMDGYVADRDG----GMDWMVWSYDSDWTWDTKLRAYHTDLMTSIDCILLSRKMA 61
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
+Q L V+ L +
Sbjct: 62 VQGFHAHWAALAQKPDNPQSHFAENLTKAEKVVF-----SKTLVRSTWDNAFFAKGNLVD 116
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
++ L + +++ GGA A S I + LVD L + +V+G G SP +E
Sbjct: 117 EVLALKRVSGK----NIIAFGGAGFASSLIQAGLVDEFHLIINPVVLGAG--LSPFKEIS 170
Query: 334 LEKNFMCVRRDYFGSDV-CLEYIGKN 358
N + + D+ LEY K
Sbjct: 171 SPLNLHLIEAIPYAHDIVVLEYSKKE 196
>gi|257075687|ref|ZP_05570048.1| hypothetical protein Faci_01419 [Ferroplasma acidarmanus fer1]
Length = 189
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+L L G+ S+LVEGG+ V + FI+ ++ D ++ + +I GI EE L
Sbjct: 113 ILKKLYDMGIKSILVEGGSNVINQFIDEKIFDEFYIFINPGLI-LDGISLFKEEMKLNYK 171
>gi|328857268|gb|EGG06385.1| hypothetical protein MELLADRAFT_86571 [Melampsora larici-populina
98AG31]
Length = 171
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA----YGGCPHAEVQALE--- 61
MS A++ + ++ V C+ + DG +I +G HAE AL
Sbjct: 1 MSEAIKMAEEA--FSANEIPVGCVFINELDGKLISKGRNRTNETRNASLHAEFDALSSLL 58
Query: 62 ------EAGEEARGATAYVTLEPCSHYG 83
+ + T YVT+EPC
Sbjct: 59 PNPKNPNLKTDFKNLTLYVTVEPCLMCS 86
>gi|327403312|ref|YP_004344150.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
16823]
gi|327318820|gb|AEA43312.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM
16823]
Length = 148
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
M D FM A ++ +G +V + +I R + H
Sbjct: 1 MISPYNDEYFMRQAYMEAQKAFELGEVPVGAV----VVVNNQIIARAHNLTERLHDVTAH 56
Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHY 82
AE+QA+ A E + T YVTLEPC
Sbjct: 57 AEMQAITAASEYLGAKYLKDCTLYVTLEPCVMC 89
>gi|90961656|ref|YP_535572.1| ComE operon protein 2 [Lactobacillus salivarius UCC118]
gi|90820850|gb|ABD99489.1| ComE operon protein 2 [Lactobacillus salivarius UCC118]
gi|300214461|gb|ADJ78877.1| ComE operon protein 2 [Lactobacillus salivarius CECT 5713]
Length = 158
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ FM A+ S T SV ++V+D VI G
Sbjct: 4 KRIPWNQYFMLQAVLLSLRS---TCERLSVGAILVRDKRVIAGGYNGAVSGDDHCIDVGC 60
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 61 YVVDGHCLRTIHAEMNAVLQCSKFGIPTDGAEIYVTDFPCLQC 103
>gi|331085809|ref|ZP_08334892.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406732|gb|EGG86237.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae bacterium 9_1_43BFAA]
Length = 177
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 1/126 (0%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P + N + K+ + RD L+T L + +
Sbjct: 53 WKTYHQIVTELSPEEWIYHNLKTYVFTHKEHKSTKNVQFINRDPADLITSLREKDGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + + L+D + ++G GI E ++ +
Sbjct: 113 ICGGANLIQQMVKEDLIDCYYITIIPTILGS-GIRLFDNLAGKELELKLIKTQTYNGMTD 171
Query: 352 LEYIGK 357
L Y+ +
Sbjct: 172 LVYVRR 177
>gi|307700388|ref|ZP_07637427.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mobiluncus mulieris FB024-16]
gi|307614373|gb|EFN93603.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Mobiluncus mulieris FB024-16]
Length = 174
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHA 55
+S + R + A + S + V ++ GIV G G+ HA
Sbjct: 5 SLSVAEQRALDTAFDLAARAA--VSGDVPVGAVLLTAQGIVTGLGLNQREIPPHDPTAHA 62
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E+ A+ EA R G T VTLEPC+
Sbjct: 63 EIVAMREAAGRLRTWNLAGCTLVVTLEPCTMC 94
>gi|227894427|ref|ZP_04012232.1| competence protein ComEB [Lactobacillus ultunensis DSM 16047]
gi|227863797|gb|EEJ71218.1| competence protein ComEB [Lactobacillus ultunensis DSM 16047]
Length = 159
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ + V ++VKD +IG G + G PH
Sbjct: 9 QYFMIQALVIAQRSTCNRA---LVGSVLVKDHRIIGTGYNGSVSGQPHCDDVGHQMVDGH 65
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ A+ + G YVT PC +
Sbjct: 66 CVRTIHSEMNAIIQCAKFGVSTENTEIYVTHFPCYNC 102
>gi|123976438|ref|XP_001330840.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896949|gb|EAY02085.1| hypothetical protein TVAG_485200 [Trichomonas vaginalis G3]
Length = 377
Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 10/144 (6%)
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL---- 279
+S A +I V + +++ ++
Sbjct: 95 PSGRLAWKENSLQYDVRPPAHIIEVLTEKATPQYKNYLRRHQISYVIAGKEEMDWKLLVQ 154
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYL 334
+ + + V+GG + SF+N+ +VD + + + + G SP
Sbjct: 155 KLKEKFNIKVISVQGGGIINWSFLNAGIVDELSVCLTAVADGSNDAVTLFERSPYFPKGT 214
Query: 335 EKNFMCVRRDYFG-SDVCLEYIGK 357
F D G + + Y K
Sbjct: 215 PIEFELKAVDKLGAGGLWIRYTPK 238
>gi|160937837|ref|ZP_02085196.1| hypothetical protein CLOBOL_02729 [Clostridium bolteae ATCC
BAA-613]
gi|158439276|gb|EDP17029.1| hypothetical protein CLOBOL_02729 [Clostridium bolteae ATCC
BAA-613]
Length = 181
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
++D FM AL R + V IV +D ++ G G P
Sbjct: 27 TWDEYFMGVALLSGRRSK---DPSTQVGACIVSQDNKILSMGY---NGFPKGCSDDEFPW 80
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 81 GKENEKEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 128
>gi|149369588|ref|ZP_01889440.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
gi|149357015|gb|EDM45570.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49]
Length = 142
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 31/108 (28%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---- 53
M S D ++ A +S+ V LIVK ++I G G P
Sbjct: 1 MKASKQKKYDVAYLRMAKEWSKLSHCNRK---QVGALIVKGNMIISDGY---NGTPTGFD 54
Query: 54 ---------------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + +GAT Y+TL PC
Sbjct: 55 NECEDCDNNTHWYVLHAEANAILKVASSTQSCQGATLYITLSPCKDCS 102
>gi|324998977|ref|ZP_08120089.1| cytidine/deoxycytidylate deaminase [Pseudonocardia sp. P1]
Length = 157
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
+ D R + AL +R S + + +++ DG + A HAEV A
Sbjct: 4 AADDRALGRALEVARGAA--ASDDVPIGAVVLDADGTELAAACNAREALGDPTAHAEVLA 61
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L A G T VT+EPC+
Sbjct: 62 LRAAARVVGSWRLTGTTLAVTVEPCTMC 89
>gi|26388773|dbj|BAB32363.2| unnamed protein product [Mus musculus]
Length = 191
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
++M A R + + V CL+V + V+G+G HAE+ A+++
Sbjct: 23 EKWMEEATRMANEALENIEV--PVGCLMVYNNEVVGKGTNEVNQTKNATRHAEMVAIDQV 80
Query: 64 -----------GEEARGATAYVTLEPCSHY 82
YVT+EPC
Sbjct: 81 LDWCHQHGQSPSTVFEHTVLYVTVEPCIMC 110
>gi|294810932|ref|ZP_06769575.1| Cytosine/adenosine deaminase [Streptomyces clavuligerus ATCC
27064]
gi|294323531|gb|EFG05174.1| Cytosine/adenosine deaminase [Streptomyces clavuligerus ATCC
27064]
Length = 206
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+FM+ A R + V P +I K+ ++ RG H EV+A+ +A
Sbjct: 24 KKFMAEAARLATESVVNGWGGP-FGAVITKNDEIVARGQNRVLLTGDPTAHGEVEAIRKA 82
>gi|260906978|ref|ZP_05915300.1| deaminase-reductase domain-containing protein [Brevibacterium
linens BL2]
Length = 262
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+T ++ EGG + + + VD + L RS +++ G S L +
Sbjct: 187 RGLTRIVCEGGPRLFTDLLRTGDVDELSLTRSPMLVAGDGT-SILHGAQFDPPAELSLTS 245
Query: 345 YFGSD---VCLEYIG 356
+G+D + L Y
Sbjct: 246 LYGTDDGYLYLLYRR 260
>gi|52144663|ref|YP_082166.1| dihydrofolate reductase family protein [Bacillus cereus E33L]
gi|51978132|gb|AAU19682.1| conserved hypothetical protein; possible dihydrofolate reductase
family protein [Bacillus cereus E33L]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|54022594|ref|YP_116836.1| hypothetical protein nfa6270 [Nocardia farcinica IFM 10152]
gi|54014102|dbj|BAD55472.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 184
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ V GG +A F ++ L+D +IL + + +G G P L + G
Sbjct: 115 NIWVVGGGDLAGQFADAGLLDELILAYAPVTLGAGAPLLP--RRILADRLTLTKSTTVGQ 172
Query: 349 DVCLEYI 355
L Y
Sbjct: 173 FAMLTYR 179
>gi|315303230|ref|ZP_07873879.1| ComE operon protein 2 [Listeria ivanovii FSL F6-596]
gi|313628400|gb|EFR96884.1| ComE operon protein 2 [Listeria ivanovii FSL F6-596]
Length = 186
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++D FM+ + S T T V IV+D +I G + G
Sbjct: 1 MQRIAWDQFFMAQSHLISSRS---TCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHG 57
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G A YVT PC
Sbjct: 58 CYVVDGHCIRTIHAEMNAILQCAKFGATTDQAELYVTHFPCLAC 101
>gi|49475071|ref|YP_033112.1| nitrogen fixation protein [Bartonella henselae str. Houston-1]
gi|49237876|emb|CAF27072.1| Nitrogen fixation protein [Bartonella henselae str. Houston-1]
Length = 148
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
M ++ M AL ++W V +I + +I R + Y HAE
Sbjct: 1 MTLTP-----MEIALLEAQWAAKKDEV--PVGAVITRGQSIIVRAGNSIKAAYDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++ + A E YVTLEPC+
Sbjct: 54 IRVIRMACAAFQSERLPDCDLYVTLEPCAMC 84
>gi|282856349|ref|ZP_06265628.1| cytidine and deoxycytidylate deaminase family protein
[Pyramidobacter piscolens W5455]
gi|282585720|gb|EFB91009.1| cytidine and deoxycytidylate deaminase family protein
[Pyramidobacter piscolens W5455]
Length = 166
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 30/101 (29%), Gaps = 34/101 (33%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----------- 51
+ + D +M+ AL V L+V G
Sbjct: 1 MLTSDQEYMNLALELGLQAAREGDI--PVGALVVD-----------PCGEIIGRGRNRRR 47
Query: 52 -----CPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV AL EA G + YVTLEPC
Sbjct: 48 IEHDPTAHAEVVALREAARNLGVWNLNGCSLYVTLEPCPMC 88
>gi|153833649|ref|ZP_01986316.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
harveyi HY01]
gi|148870047|gb|EDL69002.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
harveyi HY01]
Length = 177
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L ++GG + +F+ L+D +++ R I++G G + NF + +
Sbjct: 106 KGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGA--PLFGDLAQPLNFKVTKSE 162
Query: 345 YFGSD-VCLEYIGKN 358
V YI +
Sbjct: 163 VVLDTLVKTTYIRER 177
>gi|258517245|ref|YP_003193467.1| ComE operon protein 2 [Desulfotomaculum acetoxidans DSM 771]
gi|257780950|gb|ACV64844.1| ComE operon protein 2 [Desulfotomaculum acetoxidans DSM 771]
Length = 154
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M S+ FM A + SV CLIV+D I G
Sbjct: 1 MKRISWHEYFMGQAKIIALRSSCSRL---SVGCLIVRDRRSIAGGYNGSVSGDVHCLDDG 57
Query: 49 ---YGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G C HAE A+ + G G YVT PC +
Sbjct: 58 CRIDNGHCVRCVHAEANAIVQCAKFGASTEGTDIYVTHFPCLNC 101
>gi|170728088|ref|YP_001762114.1| deaminase-reductase domain-containing protein [Shewanella woodyi
ATCC 51908]
gi|169813435|gb|ACA88019.1| bifunctional deaminase-reductase domain protein [Shewanella woodyi
ATCC 51908]
Length = 178
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K++++ + G +L ++GG + +F+ + L+D +I+ +++G G +
Sbjct: 96 PKEVMSKINALGYNNLYIDGGVTI-QNFLKADLIDEMIITTIPVLLGGG--SPLFGDLLE 152
Query: 335 EKNFMCVRRDYFGSDVCLEYIGK 357
F V+ + V Y +
Sbjct: 153 PLKFSYVKSEPLLDCVVKNYYFR 175
>gi|229083884|ref|ZP_04216193.1| Enzyme [Bacillus cereus Rock3-44]
gi|228699462|gb|EEL52138.1| Enzyme [Bacillus cereus Rock3-44]
Length = 174
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F S L+D I+ + ++G GIP +E +
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKSNLIDEYIVTITPHILGS-GIPLF-KEKNPQI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
+ FG V L Y K+
Sbjct: 153 DLTLTDTKRFGQFVNLYYKVKS 174
>gi|296452365|ref|ZP_06894067.1| dihydrofolate reductase family protein [Clostridium difficile
NAP08]
gi|296877714|ref|ZP_06901742.1| dihydrofolate reductase family protein [Clostridium difficile
NAP07]
gi|296258794|gb|EFH05687.1| dihydrofolate reductase family protein [Clostridium difficile
NAP08]
gi|296431336|gb|EFH17155.1| dihydrofolate reductase family protein [Clostridium difficile
NAP07]
Length = 193
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ V + + N+ Y + K + I + + + GG + F+
Sbjct: 82 WYYKGKECYVYSNIINEITENVKYTNLEPKKLIEQIGREKDKKDIWIVGGGDIVKLFMKD 141
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L+D +Y I++G G S + G + N + G V LEY K
Sbjct: 142 NLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKASNIGELVKLEYSKK 191
>gi|255656804|ref|ZP_05402213.1| YwjB [Clostridium difficile QCD-23m63]
Length = 187
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ V + + N+ Y + K + I + + + GG + F+
Sbjct: 76 WYYKGKECYVYSNIINEITENVKYTNLEPKKLIEQIGREKDKKDIWIVGGGDIVKLFMKD 135
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
L+D +Y I++G G S + G + N + G V LEY K
Sbjct: 136 NLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKASNIGELVKLEYSKK 185
>gi|228925837|ref|ZP_04088921.1| Enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228833852|gb|EEM79405.1| Enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG + L Y K
Sbjct: 153 HLTLTDTKRFGQFINLYYKVK 173
>gi|55859444|emb|CAH17653.1| HTP reductase [Debaryomyces hansenii]
Length = 262
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ +TL A S D+ I I+ +K H +R++ D I+VGIGTVLADDP+L
Sbjct: 39 NKPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVGIGTVLADDPKL 98
Query: 208 TCRLNGLQEHSPMRIIL-------DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
CR H + + K L S LAP I++ + P
Sbjct: 99 NCRFEADDGHISTPRPVILDPTGKWVYNKSQLRSVCDDNKGLAPFILIDDTVTPSNEDIE 158
Query: 261 RKKNINIIY---------CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR-LVDS 310
+ + + K +L L G+ S+++EGGA++ + + +VDS
Sbjct: 159 VIEKQGGAFVKLPLLSSSNRIDNWKVILAKLFELGIKSIMIEGGASIINDLLIYNEVVDS 218
Query: 311 IILYRSQIVIGEGGI 325
+I+ + +G+ G+
Sbjct: 219 LIITIGPVFLGKDGV 233
>gi|304439109|ref|ZP_07399028.1| competence protein ComEB [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372468|gb|EFM26055.1| competence protein ComEB [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 140
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV---------------TA 48
S+D FM + + V C++V KD ++ G T
Sbjct: 4 SWDEYFMEITEMVATRSTCDRAF---VGCILVNKDNRIVSTGYNGSLSGNKSCDEIGHTM 60
Query: 49 YGG----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
G HAE+ AL + G +G YVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGISVKGCKCYVTHFPCLNC 101
>gi|167836996|ref|ZP_02463879.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
thailandensis MSMB43]
Length = 194
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
D R+M + + + V +IV+ VI RG G HAE+ AL
Sbjct: 27 ERDRRYMR--IALAAAEEARAAGEVPVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAAL 84
Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPP 87
A G YVTLEPC +
Sbjct: 85 RAAARALRNYRMPGCELYVTLEPCLMCSGAIM 116
>gi|225013101|ref|ZP_03703515.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium
MS024-2A]
gi|225002759|gb|EEG40741.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium
MS024-2A]
Length = 154
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 33/97 (34%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----------IVIGRGVT----AYG 50
D FM AL + D +I R +
Sbjct: 13 DDQYFMKQALAEAEKAAFA-------------DEVPVGAVVVVEQRIIARAHNLTERLHD 59
Query: 51 GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+QA+ A G+ G T YVTLEPC
Sbjct: 60 VTAHAEMQAITAAANYLNGKYLVGCTLYVTLEPCVMC 96
>gi|117620375|ref|YP_856166.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117561782|gb|ABK38730.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 167
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQA 59
+ ++ AL+ + + A L+V+D ++ V G P HAE++A
Sbjct: 20 NPSHQEWLEQALQLALHNRRQGGR--PFAALLVRDNQLVTSAVNAMHQDGDPTRHAELEA 77
Query: 60 LEEAGE--EARGATAYVTLEPCSHY 82
L +A + GA Y + PC
Sbjct: 78 LRQASQVGPLAGAIVYASGHPCPMC 102
>gi|163816077|ref|ZP_02207447.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
gi|158448887|gb|EDP25882.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759]
Length = 159
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-------------AYG 50
S+D FM A+ + + V IV K+ ++ G
Sbjct: 8 SWDQYFMGIAMMSAERSK---DPSTQVGACIVDKNNRILSMGYNGMPAGCDDDAMPWGKV 64
Query: 51 GCP---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G P HAE+ ++ G + A Y TL PC+
Sbjct: 65 GNPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNEC 106
>gi|229543791|ref|ZP_04432851.1| ComE operon protein 2 [Bacillus coagulans 36D1]
gi|229328211|gb|EEN93886.1| ComE operon protein 2 [Bacillus coagulans 36D1]
Length = 200
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 34/155 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG-------- 51
M S++ F++ + S T + +V IV+D +I G + G
Sbjct: 1 MDRISWNQYFLAQSHLLSWRS---TCSRLAVGATIVRDKRIIAGGYNGSIAGDEHCIDKG 57
Query: 52 ----------CPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
HAE+ A+ + G GA YVT PC H C + II+ GI+
Sbjct: 58 CYVIDGHCVRTIHAEMNAILQCAKFGVATNGADLYVTHYPCLH------CTKAIIQAGIQ 111
Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
V D RV + + G+ V+ +
Sbjct: 112 NVYYAQDY---RVHPYAKELFEKAGVHVEHVPFHP 143
>gi|95929569|ref|ZP_01312311.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
684]
gi|95134266|gb|EAT15923.1| CMP/dCMP deaminase, zinc-binding [Desulfuromonas acetoxidans DSM
684]
Length = 146
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 28/105 (26%), Gaps = 33/105 (31%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------------ 46
M A + T V +IVKD V+ G
Sbjct: 1 MDIARLVASRS---TCLRRQVGAVIVKDKNVLTTGYNGTPSGVRHCQETGCLREKMQVPS 57
Query: 47 ---TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G T Y T PC +
Sbjct: 58 GQRHELCRGLHAEQNAIIQAAKHGVNISGGTLYCTNAPCVICAKM 102
>gi|269961834|ref|ZP_06176191.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833412|gb|EEZ87514.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 210
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L L +G L ++GG + +F+ L+D +++ R I++G G +
Sbjct: 131 DVLAELNAKGFNDLYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGA--PLFGDLDQPL 187
Query: 337 NFMCVRRDYFGSDVC-LEYIGKN 358
NF + + + Y+ +
Sbjct: 188 NFKVTKSEVVLDTLVQTTYVRER 210
>gi|109946711|ref|YP_663939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Helicobacter acinonychis str. Sheeba]
gi|109713932|emb|CAJ98940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Helicobacter acinonychis str. Sheeba]
Length = 344
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/348 (14%), Positives = 94/348 (27%), Gaps = 22/348 (6%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
+ L + + L NPSVAC ++ K+ ++ V PHAEV A + A + R
Sbjct: 8 LEICLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLATKSALKILRP 67
Query: 70 A---TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ +P + + + + + + K V
Sbjct: 68 SLKIDLDQLEDPKILSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
+E K++H+ I S +N + N L
Sbjct: 128 VIAIEENKAKKGGLER----LKKAHVEALICPSLENKARDLLLPFRIMEKKGRFNLFKLA 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
+ G T T + + LD++
Sbjct: 184 LRMNGDYQHGKITGQKS-AIFTHNQRAVCGTLIVSGKTIRTDNPLLDARFCDGFYQGKNP 242
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ R + + K L G +EGG + S +
Sbjct: 243 NIAILSKHPTNSHLRVFSAPNRLVNTFHDPKDLPSDKGFN----FIEGGWELFESLRDK- 297
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCL 352
+D ++L+ +IGE L+ F + ++ L
Sbjct: 298 -IDMLLLHSHASMIGES-----FSSLALKTPFKGRLLHTQILENEALL 339
>gi|265751677|ref|ZP_06087470.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_33FAA]
gi|263236469|gb|EEZ21939.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_33FAA]
Length = 225
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY- 333
+ + + GV L + GG + F+ + L+D + + + + G G + +
Sbjct: 138 PQAMELLHEHFGVERLAIVGGGHICGGFLEAGLIDKVSIMVAPGIDGRKGQTAVFDGISR 197
Query: 334 ---LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 198 VECNPYKLKLESVEQWEADIVWLRYKVK 225
>gi|229165594|ref|ZP_04293368.1| Enzyme [Bacillus cereus AH621]
gi|228617877|gb|EEK74928.1| Enzyme [Bacillus cereus AH621]
Length = 174
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P +E E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLRGFFKNNLIDEYVVTITPHILGS-GVPLF-KEKNPEI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
+ FG V L Y K+
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVKS 174
>gi|125975082|ref|YP_001038992.1| CMP/dCMP deaminase, zinc-binding [Clostridium thermocellum ATCC
27405]
gi|281418500|ref|ZP_06249519.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|125715307|gb|ABN53799.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium thermocellum
ATCC 27405]
gi|281407584|gb|EFB37843.1| CMP/dCMP deaminase zinc-binding [Clostridium thermocellum JW20]
gi|316939247|gb|ADU73281.1| CMP/dCMP deaminase zinc-binding protein [Clostridium thermocellum
DSM 1313]
Length = 153
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + T V LIVKD ++ G
Sbjct: 4 SWDEYFMEI-VEL--IKTRSTCLRRQVGALIVKDKRILATGYNGAPMGCKHCSEIGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G T YVT +PC +
Sbjct: 61 KLNVPSGQRHELCRAIHAEQNAIVQAAYSGTSVNGGTLYVTTQPCILCAKM 111
>gi|319406589|emb|CBI80231.1| Cytosine/adenosine deaminase [Bartonella sp. 1-1C]
Length = 150
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 22/134 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M ++ M AL ++ V +I +I R T + HAE
Sbjct: 1 MRLTP-----MEIALLEAQLAKKQDEI--PVGAVITHGQTIIARAGNYIKTPHDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
++ + A E YVTLEPC CA I IR + DP
Sbjct: 54 MRVIRIACQIFKSERIPECDLYVTLEPC------AMCAATISFARIRNLYYATSDPKGGA 107
Query: 112 SGRGLQWLSQKGII 125
G ++ Q+
Sbjct: 108 IEHGPRFYQQQTCH 121
>gi|312866406|ref|ZP_07726624.1| putative ComE operon protein 2 [Streptococcus downei F0415]
gi|311098100|gb|EFQ56326.1| putative ComE operon protein 2 [Streptococcus downei F0415]
Length = 151
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ T V ++VKD +I G G
Sbjct: 11 YFMANAELISKRS---TCDRAYVGAVLVKDKRIIATGYNGGVSETDNCNEVGHYMEDGHC 67
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 68 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 103
>gi|269126013|ref|YP_003299383.1| bifunctional deaminase-reductase domain-containing protein
[Thermomonospora curvata DSM 43183]
gi|268310971|gb|ACY97345.1| bifunctional deaminase-reductase domain protein [Thermomonospora
curvata DSM 43183]
Length = 229
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 4/137 (2%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTI 281
I+ L LDS + V++ + P A R + + D D + +
Sbjct: 92 IVSRRLDLDLDSPVFTEPKARTVLLTVQAAPPERLRAAERVAEVIMAGEDGIDFSRAVRE 151
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
L RG LL EGG AV ++D + L S +++ L L +
Sbjct: 152 LAARGHRRLLCEGGPAVLARAAADGVLDELCLTLSPMLVAGDPSR-ILAGPPLPRPLRMR 210
Query: 342 RRDYFGSD--VCLEYIG 356
+ D + L Y
Sbjct: 211 PASVYEEDGFLFLRYRR 227
>gi|21229604|ref|NP_635521.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766481|ref|YP_241243.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111078|gb|AAM39445.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66571813|gb|AAY47223.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 150
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 46/150 (30%), Gaps = 31/150 (20%)
Query: 3 VSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------- 53
+ +D RF +R N V ++ K G + G G P
Sbjct: 1 MQKWDVRF----CDLARYISAWSKDPNAKVGAVLFSKKGGNVSIGY---NGFPIGVEDSA 53
Query: 54 --------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAEV A+ AG A G+T YV +P + P Q I+ +
Sbjct: 54 ERLTDKDVKLELVVHAEVNAIIAAGVRAEGSTIYVWGKPICAR-CAGPIIQAGIKRVVAL 112
Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ + + GI VD
Sbjct: 113 APGESESHWDKSGKTARDMFIEAGITVDFY 142
>gi|242003371|ref|XP_002422714.1| Deoxycytidylate deaminase, putative [Pediculus humanus corporis]
gi|212505536|gb|EEB09976.1| Deoxycytidylate deaminase, putative [Pediculus humanus corporis]
Length = 172
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 34/143 (23%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------------- 53
M+ A ++ + V IV D ++G G G P
Sbjct: 1 MANAFLAAKRSK---DPSTQVGACIVDDDKKIVGIGY---NGFPIGCDDDDFPWTKNSDS 54
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
HAE+ A+ + +G+ YV L PC+ + + +
Sbjct: 55 PLENKHFYVCHAEMNAILNKNSANIKGSKIYVVLFPCNECAKFIIQSGIKEVIYMSDKHH 114
Query: 103 CVDDPDVRVSGRGLQWLSQKGII 125
++ + +
Sbjct: 115 ERLQTMAAKKMFAAAGITCRKFV 137
>gi|86143346|ref|ZP_01061748.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
gi|85830251|gb|EAQ48711.1| guanine deaminase [Leeuwenhoekiella blandensis MED217]
Length = 149
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-----HAEVQAL 60
F+ A+ +++ +IVKDG +I G G HAE+ +
Sbjct: 5 QHKDFLKRAIDWAKRGKAAEGGGAFG-AVIVKDGSIIAEG-HNRVGENTDCTQHAELAMI 62
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+EA ++ +G Y + EPC
Sbjct: 63 QEACKKLGSKSLKGCILYTSCEPCLMC 89
>gi|301052301|ref|YP_003790512.1| putative dihydrofolate reductase family protein [Bacillus anthracis
CI]
gi|300374470|gb|ADK03374.1| possible dihydrofolate reductase family protein [Bacillus cereus
biovar anthracis str. CI]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|291448597|ref|ZP_06587987.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
roseosporus NRRL 15998]
gi|291351544|gb|EFE78448.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
roseosporus NRRL 15998]
Length = 262
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEK 336
++ L RG+ L EGG + F+ + +D + L S ++ G+ + + +
Sbjct: 180 VVRELAARGLRRQLTEGGPRLLGQFVAAGALDELCLTLSPMLTAGDAQRIAGGPGVAVPE 239
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
F + Y +
Sbjct: 240 RFFLASLLEEAGFLFSRYRRTD 261
>gi|239945135|ref|ZP_04697072.1| hypothetical protein SrosN15_29385 [Streptomyces roseosporus NRRL
15998]
gi|239991596|ref|ZP_04712260.1| hypothetical protein SrosN1_30112 [Streptomyces roseosporus NRRL
11379]
Length = 256
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEK 336
++ L RG+ L EGG + F+ + +D + L S ++ G+ + + +
Sbjct: 174 VVRELAARGLRRQLTEGGPRLLGQFVAAGALDELCLTLSPMLTAGDAQRIAGGPGVAVPE 233
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
F + Y +
Sbjct: 234 RFFLASLLEEAGFLFSRYRRTD 255
>gi|194874728|ref|XP_001973453.1| GG16092 [Drosophila erecta]
gi|190655236|gb|EDV52479.1| GG16092 [Drosophila erecta]
Length = 199
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 40/111 (36%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FM+ +L ++ V IV ++ G G P
Sbjct: 24 WDDYFMATSLLSAKRSK---DPVTQVGACIVDSRNRIVAIGY---NGFPRNCSDDVFPWS 77
Query: 54 ---------------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 78 KAKKKRAHDFDPLEDKKLYVVHAEANAILNSIGMSLTGTRLYTTLFPCNEC 128
>gi|167760281|ref|ZP_02432408.1| hypothetical protein CLOSCI_02654 [Clostridium scindens ATCC 35704]
gi|167662164|gb|EDS06294.1| hypothetical protein CLOSCI_02654 [Clostridium scindens ATCC 35704]
Length = 164
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A+ N V C IV +D ++ G
Sbjct: 12 SWDEYFMGVAMLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGLPMGCSDDEFPWVRE 68
Query: 47 ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 69 GDDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNEC 111
>gi|317123562|ref|YP_004097674.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
gi|315587650|gb|ADU46947.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043]
Length = 190
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG+VIGRG HAEV AL A GAT VTLEPC
Sbjct: 40 PVGAVVIGSDGLVIGRGRNVREELGDPTGHAEVIALRSAAAAVGTWRLDGATLAVTLEPC 99
Query: 80 SHY 82
Sbjct: 100 VMC 102
>gi|291005926|ref|ZP_06563899.1| deaminase-reductase domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 203
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SD 349
L+ GG +A +RLVD L+ + +V+G G P L + + F
Sbjct: 128 LIVGGPGLAEHAFRARLVDECHLFVTPVVVGGGTRALP---DGLRLDLELLAERRFDAGT 184
Query: 350 VCLEYIGKN 358
V L Y +N
Sbjct: 185 VYLRYRVRN 193
>gi|134102775|ref|YP_001108436.1| deaminase-reductase domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133915398|emb|CAM05511.1| bifunctional deaminase-reductase domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 196
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SD 349
L+ GG +A +RLVD L+ + +V+G G P L + + F
Sbjct: 121 LIVGGPGLAEHAFRARLVDECHLFVTPVVVGGGTRALP---DGLRLDLELLAERRFDAGT 177
Query: 350 VCLEYIGKN 358
V L Y +N
Sbjct: 178 VYLRYRVRN 186
>gi|326335838|ref|ZP_08202017.1| zinc-binding domain protein [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691982|gb|EGD33942.1| zinc-binding domain protein [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 145
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 7 DARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV--TAYGG--CPHAEVQAL 60
D FM AL+ + G V +I + I+I + T G HAE+QA+
Sbjct: 4 DTYFMQKALQEAEIAFEQGEV----PVGAIITINEIIIAKTHNLTERLGDVTAHAEIQAI 59
Query: 61 EEA-----GEEARGATAYVTLEPCSHY 82
A G+ T YVTLEPC
Sbjct: 60 TSASEYMGGKYLTNCTLYVTLEPCVMC 86
>gi|134108590|ref|XP_776948.1| hypothetical protein CNBB4760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259631|gb|EAL22301.1| hypothetical protein CNBB4760 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 350
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 32/113 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------- 48
+D FM+ A S + V L+V+ ++ G
Sbjct: 203 WDTYFMTLASLASERSNCMKR---RVGALLVRSKRILSTGYNGTPRGTRNCNQGGCSRCN 259
Query: 49 ---YGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCA 89
GG HAE AL EAG E G + Y PC
Sbjct: 260 GSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLRCSVKIVQC 312
>gi|332291606|ref|YP_004430215.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
gi|332169692|gb|AEE18947.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus
4H-3-7-5]
Length = 142
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V +IVKD ++I G G P
Sbjct: 9 DIAYLRMAREWGKLSYCNRK---QVGAIIVKDKMIISDGY---NGTPTGFENVCEDDENN 62
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + GAT Y+TL PC
Sbjct: 63 TKWYVLHAEANAILKVASSTQSCHGATLYITLSPCKDCS 101
>gi|304373353|ref|YP_003856562.1| deoxycytidylate deaminase [Mycoplasma hyorhinis HUB-1]
gi|304309544|gb|ADM22024.1| deoxycytidylate deaminase [Mycoplasma hyorhinis HUB-1]
Length = 162
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
+++ F++ A ++ N V IV K V+G G G P
Sbjct: 11 NWNEYFLALAKISAKRSK---DPNTQVGACIVSKQNRVLGIGY---NGMPKGNDVDFPWS 64
Query: 54 ---------------HAEVQALEEAGEEA---RGATAYVTLEPCSHY 82
HAE+ A+ + A YV+L PCS+
Sbjct: 65 KDSNKASEVKYSYVIHAEINAILNSILPLNTVEDAKLYVSLFPCSNC 111
>gi|292572491|gb|ADE30406.1| Cytosine deaminase [Rickettsia prowazekii Rp22]
Length = 163
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 9 RFMSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALE 61
FM AL+ +R N V +IV + +I HAE+ A+
Sbjct: 14 FFMEQALKQARLAF---DKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAIN 70
Query: 62 EAG-----EEARGATAYVTLEPCSHY 82
A + YVTLEPC+
Sbjct: 71 TACNLISSKNLNDYDIYVTLEPCAMC 96
>gi|225573949|ref|ZP_03782594.1| hypothetical protein RUMHYD_02043 [Blautia hydrogenotrophica DSM
10507]
gi|225038808|gb|EEG49054.1| hypothetical protein RUMHYD_02043 [Blautia hydrogenotrophica DSM
10507]
Length = 164
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 31/104 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPS--VACLIVK-DGIVIGRGVTA------------- 48
++D FM A + + G+ S +PS V IV D ++ G
Sbjct: 13 TWDEYFMGVA-QLA----GMRSKDPSSQVGACIVSEDNKILSMGYNGFPIGCSDDDFPWA 67
Query: 49 YGGC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GA YVTL PC+
Sbjct: 68 REGEELETKYLYVTHSELNAILNYRGGSLEGAKLYVTLFPCNEC 111
>gi|237831707|ref|XP_002365151.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii
ME49]
gi|211962815|gb|EEA98010.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii
ME49]
gi|221487001|gb|EEE25247.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii GT1]
gi|221506684|gb|EEE32301.1| tRNA-specific adenosine deaminase, putative [Toxoplasma gondii VEG]
Length = 178
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 27/110 (24%)
Query: 2 PVSSFDAR-FMSAALRFSRWHV--GLTSTNPSVACLIVKDG--IVIGRGVTA----YGGC 52
+ D R FMSAAL +R + G V C++V V+ RG A
Sbjct: 3 EYTEADKRLFMSAALEEARLALKEGEV----PVGCVLVDSKTRQVVSRGRNATNRTKNAT 58
Query: 53 PHAEVQALE--------------EAGEEARGATAYVTLEPCSHYGRSPPC 88
H E++AL+ E + +VT EPC + C
Sbjct: 59 RHCELEALDAYMALLPPPNIGGVEPRVDLSSIDLFVTCEPCVMCAVALQC 108
>gi|206978382|ref|ZP_03239254.1| dihydrofolate reductase family protein [Bacillus cereus H3081.97]
gi|206743416|gb|EDZ54851.1| dihydrofolate reductase family protein [Bacillus cereus H3081.97]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ D+ + L + + + + GG ++ F + L+D ++ + ++G G+P
Sbjct: 85 HVEFVNEDVVEFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVP 143
Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
++ E + FG V L Y K
Sbjct: 144 LFQDKNP-EIHLTLTDTKRFGQFVNLYYKVK 173
>gi|262274059|ref|ZP_06051871.1| deoxycytidylate deaminase [Grimontia hollisae CIP 101886]
gi|262221869|gb|EEY73182.1| deoxycytidylate deaminase [Grimontia hollisae CIP 101886]
Length = 152
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYG----------G-------CPHAEVQALEEAGEEARG 69
+ V +I K ++ G Y G HAE A+ A +
Sbjct: 23 PSTQVGAVITKGNRIVSVGFNGYPHGISDSAETDGREMKLLKTLHAEENAILFAKRDLLD 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+VT PC + I + + Q G+ ++ +
Sbjct: 83 CEIWVTHFPCPNCAAKI-IQTGISQVHCPEQSEDFLSRWGDKIQVSVDMFEQAGVKINWL 141
Query: 130 MESEGKIFLHA 140
E K
Sbjct: 142 PLDELKNCKAH 152
>gi|258510212|ref|YP_003183646.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257476938|gb|ACV57257.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 151
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ + F S A + T T V C++V+D +I G
Sbjct: 9 DWHSFFASQARVMAARS---TCTRLQVGCVVVRDKRIIASGYNGSIHGDEHCVDVGCKVV 65
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL + G A GA YVT PC
Sbjct: 66 DGHCVRAIHAEQNALLQCARFGIAAEGADLYVTHTPCLTC 105
>gi|222094403|ref|YP_002528462.1| dihydrofolate reductase family protein [Bacillus cereus Q1]
gi|221238460|gb|ACM11170.1| dihydrofolate reductase family protein [Bacillus cereus Q1]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|148927737|ref|ZP_01811174.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
gi|147886911|gb|EDK72444.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
Length = 168
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+L+ L G + + + GGA++ F+ S LVD + L ++ G G PL G L
Sbjct: 85 PTELVARLKNEGASGVAICGGASIYQLFMESGLVDEVYLTLEPLLFGTG---VPLFSGQL 141
Query: 335 EKNFMCVRRDYFGSD-VCLEYIGKN 358
E V + V L Y K
Sbjct: 142 EVALQLVSLKKLNENTVLLHYKVKK 166
>gi|227890744|ref|ZP_04008549.1| competence protein ComEB [Lactobacillus salivarius ATCC 11741]
gi|301300424|ref|ZP_07206625.1| ComE operon protein 2 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|227867682|gb|EEJ75103.1| competence protein ComEB [Lactobacillus salivarius ATCC 11741]
gi|300851967|gb|EFK79650.1| ComE operon protein 2 [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 162
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 25/103 (24%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
++ FM A+ S T SV ++V+D VI G
Sbjct: 8 KRIPWNQYFMLQAVLLSLRS---TCERLSVGAILVRDKRVIAGGYNGAVSGDDHCIDVGC 64
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 65 YVVDGHCLRTIHAEMNAVLQCSKFGIPTDGAEIYVTDFPCLQC 107
>gi|209966841|ref|YP_002299756.1| cytidine and deoxycytidylate deaminase, putative [Rhodospirillum
centenum SW]
gi|209960307|gb|ACJ00944.1| cytidine and deoxycytidylate deaminase, putative [Rhodospirillum
centenum SW]
Length = 158
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 27/89 (30%), Gaps = 25/89 (28%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----------DGIVIGRGVTAY--GGCPHAEVQ 58
M AL + G P V +IV T HAEV
Sbjct: 15 MRQALAEAE-AAGQRGEVP-VGAVIVDPATGAVVAAAGNR------TEELADPTAHAEVL 66
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ A G YVTLEPC+
Sbjct: 67 AIRAACAVLGAPRLPGLDLYVTLEPCAMC 95
>gi|228944401|ref|ZP_04106774.1| Enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228815303|gb|EEM61551.1| Enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 173
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|254392686|ref|ZP_05007860.1| guanine deaminase [Streptomyces clavuligerus ATCC 27064]
gi|326439435|ref|ZP_08214169.1| Guanine deaminase [Streptomyces clavuligerus ATCC 27064]
gi|197706347|gb|EDY52159.1| guanine deaminase [Streptomyces clavuligerus ATCC 27064]
Length = 187
Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+FM+ A R + V P +I K+ ++ RG H EV+A+ +A
Sbjct: 5 KKFMAEAARLATESVVNGWGGP-FGAVITKNDEIVARGQNRVLLTGDPTAHGEVEAIRKA 63
>gi|255325111|ref|ZP_05366217.1| riboflavin biosynthesis protein RibD domain protein
[Corynebacterium tuberculostearicum SK141]
gi|255297676|gb|EET76987.1| riboflavin biosynthesis protein RibD domain protein
[Corynebacterium tuberculostearicum SK141]
Length = 228
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 12/200 (6%)
Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
S + LR +D +LVG TV + + NG +
Sbjct: 30 TMNHVSEDMGNDTDGQLFAALRNWADVVLVGAQTVR-AEDYSGVQPNGDGSRPAPIAVPS 88
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLT 280
+ + P+I++ + + ++ ++
Sbjct: 89 RSLDFDITADFFTDFTTPPIILIPHSSRDNQELIKRIATIESTGAEVCDAGEGTVQDYIS 148
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+L RG +L EGG + ++ +D + L + G+ +P+ E +
Sbjct: 149 VLKDRGFKRVLCEGGPGMIGQLVDIDAIDQMYLTLDPHL--STGVETPMATFKGEHSHRR 206
Query: 341 VRRDYFGSD----VCLEYIG 356
++ + D V L Y
Sbjct: 207 MQLENVADDKDGTVFLRYSR 226
>gi|318060329|ref|ZP_07979052.1| hypothetical protein SSA3_20463 [Streptomyces sp. SA3_actG]
Length = 80
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ L EGG + I + VD + L S + L
Sbjct: 3 RGLRRQLAEGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALTTPARLRPAS 62
Query: 345 YFGSD--VCLEYIGK 357
D + Y+
Sbjct: 63 ILAEDGFLFTRYVRD 77
>gi|168185037|ref|ZP_02619701.1| guanine deaminase [Clostridium botulinum Bf]
gi|237794579|ref|YP_002862131.1| guanine deaminase [Clostridium botulinum Ba4 str. 657]
gi|182671910|gb|EDT83871.1| guanine deaminase [Clostridium botulinum Bf]
gi|229262002|gb|ACQ53035.1| guanine deaminase [Clostridium botulinum Ba4 str. 657]
Length = 157
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
IVKDG VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLSTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|326428921|gb|EGD74491.1| tRNA-specific adenosine deaminase [Salpingoeca sp. ATCC 50818]
Length = 191
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 22/92 (23%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQAL--- 60
M AA+ ++ + G V C+ V D G V G + HAE+ A
Sbjct: 1 MEAAVAEAQRALAEGEV----PVGCVFVDDNGNVQAAGRNQTNIEHNATRHAELVAFDDC 56
Query: 61 --------EEAGEEARGATAYVTLEPCSHYGR 84
E+A + T YVT+EPC
Sbjct: 57 VARCGGDVEKAKDIVASCTLYVTVEPCVMCAY 88
>gi|188587446|ref|YP_001918991.1| CMP/dCMP deaminase zinc-binding [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179352133|gb|ACB86403.1| CMP/dCMP deaminase zinc-binding [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 154
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+D+ FM A + T V ++V + ++ G
Sbjct: 6 DWDSYFMEIAGTVKKRS---TCLRRQVGAVMVSERRILATGYNGAPQDLPHCSETGCLRE 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ ++ G RG+T Y T PCS +
Sbjct: 63 ELNVPSGERHEICRGLHAEQNAIIQSALHGVTTRGSTLYTTDFPCSLCAKM 113
>gi|196035640|ref|ZP_03103043.1| dihydrofolate reductase family protein [Bacillus cereus W]
gi|195991607|gb|EDX55572.1| dihydrofolate reductase family protein [Bacillus cereus W]
Length = 173
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTEKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|313157371|gb|EFR56794.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Alistipes sp. HGB5]
Length = 149
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 48/143 (33%), Gaps = 39/143 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-----------GRGV----TAY 49
D +FM AL +R + L P I GRG T
Sbjct: 6 KTDEKFMRLALNEARKALQL-QEVP------------IGAVVVADGAVVGRGHNLVETLS 52
Query: 50 GGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104
HAE+QAL A G+ +G T YVT+EPC CA + RVV
Sbjct: 53 DPTAHAEMQALTAAASTLGGKYLQGCTLYVTVEPCI------MCAGATGWAQVGRVVWGA 106
Query: 105 DDPDVRVSGRGLQWLSQKGIIVD 127
DDP K +V
Sbjct: 107 DDPKKGYRRYSETVFHPKTTVVR 129
>gi|322805608|emb|CBZ03173.1| tRNA-specific adenosine-34 deaminase [Clostridium botulinum
H04402 065]
Length = 157
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|323304625|gb|EGA58388.1| Dcd1p [Saccharomyces cerevisiae FostersB]
Length = 145
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 30/100 (30%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------YGGCP-------- 53
M A + + V C+IV++ VI G GGCP
Sbjct: 1 MKLATLAASRSNCMKR---RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRCNDGDSR 57
Query: 54 --------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG + + AT Y PC
Sbjct: 58 NLHTCLCLHAEENALLEAGRDRVGQNATLYCDTCPCLTCS 97
>gi|320159274|ref|YP_004191652.1| dihydrofolate reductase-like protein [Vibrio vulnificus MO6-24/O]
gi|319934586|gb|ADV89449.1| dihydrofolate reductase [Vibrio vulnificus MO6-24/O]
Length = 177
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L +G L ++GG V SF+ L+D +I+ +++G GIP N
Sbjct: 99 VVEQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGA-GIPLF-GSLPKALN 155
Query: 338 FMCVRRDYFGSD-VCLEYIG 356
F + + V Y+
Sbjct: 156 FKHIHAERLADHMVKNHYVR 175
>gi|313905681|ref|ZP_07839042.1| bifunctional deaminase-reductase domain protein [Eubacterium
cellulosolvens 6]
gi|313469505|gb|EFR64846.1| bifunctional deaminase-reductase domain protein [Eubacterium
cellulosolvens 6]
Length = 229
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRR 343
+ + + GG + SF++ LVD + L + G G+ + + + +
Sbjct: 150 IERMAIVGGGHINGSFLDEGLVDEVSLLIGPAIDGREGMTAVFDGRRKDREPIHMLLKDI 209
Query: 344 DYFGSD-VCLEYIGKN 358
F V L Y KN
Sbjct: 210 QKFEDGAVWLRYEVKN 225
>gi|332879651|ref|ZP_08447345.1| hypothetical protein HMPREF9074_03098 [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332682412|gb|EGJ55315.1| hypothetical protein HMPREF9074_03098 [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 237
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 12/211 (5%)
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
+ G + + + + + P +
Sbjct: 21 RWTQPFGETDKTELLKVYAAIGRELNTDAWMFGKNTVCAVFPEKSNKGNTPFSRTASVFM 80
Query: 215 QEHSPMRIIL--DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
E R+ + DP + S ++ + V+ ++ + L + + ++
Sbjct: 81 GERHSERMFIVSDPDGDILFTSSTLRGDNILVVLGRNVTEEYLAFLRGIRISYAVVEDAT 140
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
L G+ S+ V+GG + + + ++D + L + G GIPS E
Sbjct: 141 DLHAGLEAANREFGIRSVSVQGGGILNGALLKEGVIDELSLVVYPGIDGLAGIPSVFEYI 200
Query: 333 YLE-------KNFMCVRRDY--FGSDVCLEY 354
+ +N + + +G V L Y
Sbjct: 201 GSKTDCPAKGQNLQLLSVEQREYGV-VWLRY 230
>gi|87311104|ref|ZP_01093228.1| putative nucleotide deaminase [Blastopirellula marina DSM 3645]
gi|87286195|gb|EAQ78105.1| putative nucleotide deaminase [Blastopirellula marina DSM 3645]
Length = 162
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE 66
M A+ ++ + + C I DG V+ HAEV AL A ++
Sbjct: 13 MQLAIEKAKQGIAARQS--PFGCAIAVDGEVVAVSHNLVLQTVDATAHAEVTALRVACQK 70
Query: 67 -----ARGATAYVTLEPCSHY 82
A T EPC
Sbjct: 71 VGEILLPRAQVATTCEPCPMC 91
>gi|326444043|ref|ZP_08218777.1| hypothetical protein SclaA2_23394 [Streptomyces clavuligerus ATCC
27064]
Length = 275
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
+G+ LL EGG + F+ + ++D + L S V G+ + + F
Sbjct: 200 AEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTVTAGDSQRIAHGPAMAVPARFTLA 259
Query: 342 RRDYFGSDVCLEYIG 356
+ Y
Sbjct: 260 GVLEEDGFLFTRYQR 274
>gi|294815697|ref|ZP_06774340.1| Bifunctional deaminase-reductase domain-containing protein
[Streptomyces clavuligerus ATCC 27064]
gi|294328296|gb|EFG09939.1| Bifunctional deaminase-reductase domain-containing protein
[Streptomyces clavuligerus ATCC 27064]
Length = 281
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
+G+ LL EGG + F+ + ++D + L S V G+ + + F
Sbjct: 206 AEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTVTAGDSQRIAHGPAMAVPARFTLA 265
Query: 342 RRDYFGSDVCLEYIG 356
+ Y
Sbjct: 266 GVLEEDGFLFTRYQR 280
>gi|254822445|ref|ZP_05227446.1| hypothetical protein MintA_21101 [Mycobacterium intracellulare
ATCC 13950]
Length = 152
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
D + + +AL + + + +++ DG + R V A HAE+ AL
Sbjct: 4 DEQLIRSALSVAATAGPR---DVPIGAVVISADGTELARAVNAREALGDPTAHAEILALR 60
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A G GAT VT+EPC+
Sbjct: 61 AAAEVLGDGWRLEGATLAVTVEPCTMC 87
>gi|227873068|ref|ZP_03991362.1| dCMP deaminase [Oribacterium sinus F0268]
gi|227841049|gb|EEJ51385.1| dCMP deaminase [Oribacterium sinus F0268]
Length = 173
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
S+D FM + + V IV D ++ G G P
Sbjct: 19 SWDEYFMGICTLSAHRSK---DPSTQVGACIVSPDHKILSMGY---NGFPKGCSDDIFPW 72
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE+ A+ G GAT YVTL PC+
Sbjct: 73 AKMKAEQDPYNAKYFYVTHAELNAILNYRGGSLEGATIYVTLFPCNEC 120
>gi|226228088|ref|YP_002762194.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Gemmatimonas aurantiaca T-27]
gi|226091279|dbj|BAH39724.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Gemmatimonas aurantiaca T-27]
Length = 229
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + V +L++EGG V + + LVD I L + +V G G PS +
Sbjct: 145 ALEKLAAHFAVKTLMLEGGGQVNRAMLERGLVDEISLLIAPVVDGRAGAPSVFDGMSQSP 204
>gi|254393143|ref|ZP_05008301.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
clavuligerus ATCC 27064]
gi|197706788|gb|EDY52600.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptomyces
clavuligerus ATCC 27064]
Length = 275
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
+G+ LL EGG + F+ + ++D + L S V G+ + + F
Sbjct: 200 AEQGLRRLLTEGGPRLLGHFMAAGVLDELCLTLSPTVTAGDSQRIAHGPAMAVPARFTLA 259
Query: 342 RRDYFGSDVCLEYIG 356
+ Y
Sbjct: 260 GVLEEDGFLFTRYQR 274
>gi|328858134|gb|EGG07248.1| hypothetical protein MELLADRAFT_35707 [Melampsora larici-populina
98AG31]
Length = 341
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 40/122 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT--------------- 47
+D FM+ A S + V +++ +D V+ G
Sbjct: 189 DWDQYFMTLANLASLRSNCMKR---RVGAVLITKRDKRVLSTGYNGTPRGMTNCNEGGCA 245
Query: 48 ---------AYGGCP-------HAEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPP 87
+ G HAE AL EAG + G+T Y PC
Sbjct: 246 RLGTAAEVVSKCGTDLNECLCLHAEENALLEAGRDRMGAGEGSTLYCNTCPCLRCSVKIV 305
Query: 88 CA 89
Sbjct: 306 QC 307
>gi|302498222|ref|XP_003011109.1| hypothetical protein ARB_02631 [Arthroderma benhamiae CBS 112371]
gi|291174657|gb|EFE30469.1| hypothetical protein ARB_02631 [Arthroderma benhamiae CBS 112371]
Length = 251
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
++D FM A ++ + V C+IVKD V+ G G P
Sbjct: 189 AWDQYFMQLASLAAQRSNCMKR---RVGCVIVKDNRVMSTGY---NGTP 231
>gi|255931347|ref|XP_002557230.1| Pc12g03450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581849|emb|CAP79972.1| Pc12g03450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 177
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 27/166 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYG--------GCPHA 55
FM AL ++ + V ++V +G V+ G + G HA
Sbjct: 13 DHEAFMDLALIQAQKSPPGANK-FCVGAVLVDADNGKVLSTGYSLEYAQNYKGDPGTTHA 71
Query: 56 EVQALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVV 101
E + +E Y T+EPC+ + + + V
Sbjct: 72 EQCCFIKIADEHNLPEERIHEVLPANTALYTTMEPCNERLSSNMTCTTRILRLKSAIKTV 131
Query: 102 VCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
G L G+ V +E +
Sbjct: 132 YVGIKEPGTFIAHNDGQGRLEANGVKVVFPVEHWRSKITKISMNGH 177
>gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis]
Length = 311
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 12 SAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-- 63
A +R + G V C+++ + ++IGRG C HAE++A +EA
Sbjct: 9 EEAFTLARKALSIGEV----PVGCVLLYENVIIGRGHNRVNFYKNACRHAEMEAFDEAFL 64
Query: 64 ---------GEEARGATAYVTLEPCSHYGRSPPCAQ 90
+ T +VT EPC Q
Sbjct: 65 WCKANCFSFNDVFLKTTLFVTCEPCMMCAALICKMQ 100
>gi|229194967|ref|ZP_04321748.1| Enzyme [Bacillus cereus m1293]
gi|228588535|gb|EEK46572.1| Enzyme [Bacillus cereus m1293]
Length = 179
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 101 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 158
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 159 HLTLTDTKRFGQFVNLYYKVK 179
>gi|256376193|ref|YP_003099853.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
gi|255920496|gb|ACU36007.1| CMP/dCMP deaminase zinc-binding [Actinosynnema mirum DSM 43827]
Length = 158
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
++ ++ + +V L+ + V+ G HAEV A+ A
Sbjct: 9 WLRRSVDLAVRNVADGGG--PFGALVARGDEVVATGANRVTADLDPTAHAEVVAIRAACR 66
Query: 66 -----EARGATAYVTLEPCSHY 82
G + EPC
Sbjct: 67 ALGDFSLAGCVLVSSCEPCPLC 88
>gi|116628436|ref|YP_821055.1| late competence protein required for DNA binding and uptake
[Streptococcus thermophilus LMD-9]
gi|116101713|gb|ABJ66859.1| Deoxycytidylate deaminase [Streptococcus thermophilus LMD-9]
gi|312279054|gb|ADQ63711.1| Cytidine/deoxycytidylate deaminase family protein [Streptococcus
thermophilus ND03]
Length = 151
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
FM+ A S+ + V ++VKD +I G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDKRIIATGYNGGVSEADNCNEVGHYMEDGHC 66
Query: 54 ----HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 102
>gi|255326091|ref|ZP_05367178.1| tRNA-specific adenosine deaminase [Rothia mucilaginosa ATCC
25296]
gi|255296802|gb|EET76132.1| tRNA-specific adenosine deaminase [Rothia mucilaginosa ATCC
25296]
Length = 158
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
+ ++V + G +IG HAEV A+ +A G T VT+EPC
Sbjct: 32 PIGAVVVDEQGAIIGSAGNTREREHDPSAHAEVNAIRQAAAHRGQWRLDGCTLVVTVEPC 91
Query: 80 SHY 82
Sbjct: 92 LMC 94
>gi|311739573|ref|ZP_07713408.1| riboflavin biosynthesis protein RibD [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305389|gb|EFQ81457.1| riboflavin biosynthesis protein RibD [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 228
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 12/200 (6%)
Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
S + LR +D +LVG TV + + NG +
Sbjct: 30 TMNHVSEDMGNDTDGQLFAALRNWADVVLVGAQTVR-AEDYSGVKPNGDGSRPAPIAVPS 88
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPV-----LALAFRKKNINIIYCDCRDLKKLLT 280
+ + P+I++ + + ++ ++
Sbjct: 89 RSLDFDITADFFTDFTTPPIILIPHSSRDNQELIKRIATIESTGAEVCDAGEGTVQDYIS 148
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+L RG +L EGG + ++ +D + L + G+ +P+ E +
Sbjct: 149 VLKDRGFKRVLCEGGPGMIGQLVDIDAIDQMYLTLDPHL--STGVETPMATFKGEHSHRR 206
Query: 341 VRRDYFGSD----VCLEYIG 356
++ + D V L Y
Sbjct: 207 MQLENVADDKDGTVFLRYSR 226
>gi|226948555|ref|YP_002803646.1| guanine deaminase [Clostridium botulinum A2 str. Kyoto]
gi|226842608|gb|ACO85274.1| guanine deaminase [Clostridium botulinum A2 str. Kyoto]
Length = 157
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|225847913|ref|YP_002728076.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644623|gb|ACN99673.1| diaminohydroxyphosphoribosylaminopyrimidine reductase
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 221
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 7/194 (3%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ + +H RA+ D I+VG T+ D+P LT R +P RII
Sbjct: 27 KEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTDNPYLTVRYVK--GKNPTRIIPTSTA 84
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ LD+ ++K +I + + + K + I + DL K++ L RG+
Sbjct: 85 DIPLDANVLKKDAPTIIITTEKAPEEKIKALSEKVEVVKIGDEKVDLIKMMDFLYNRGIR 144
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRR 343
+L+VEGG+ + + +N LVD I + ++G P+ + +
Sbjct: 145 TLMVEGGSTLNWNLLNLGLVDEIRIIHMPFIVGGTDTPTLVGGEGFKNLDEVIRLKLRAH 204
Query: 344 DYFGSDVCLEYIGK 357
GS + E+ K
Sbjct: 205 FMRGSHLITEWEVK 218
>gi|21227336|ref|NP_633258.1| hypothetical protein MM_1234 [Methanosarcina mazei Go1]
gi|20905692|gb|AAM30930.1| conserved protein [Methanosarcina mazei Go1]
Length = 128
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG+ + +F+ LVD +I++ I++G GIP + E + +
Sbjct: 58 KDIWLVGGSQLIKAFLEEDLVDDMIVFIVPIILGG-GIPLF-DRIGKEIKLKMTNTERYE 115
Query: 348 SDVC-LEY 354
S + EY
Sbjct: 116 SGLLRTEY 123
>gi|322370973|ref|ZP_08045526.1| bifunctional deaminase-reductase domain protein [Haladaptatus
paucihalophilus DX253]
gi|320549408|gb|EFW91069.1| bifunctional deaminase-reductase domain protein [Haladaptatus
paucihalophilus DX253]
Length = 207
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GGAAV F+ + L+D + ++ + +++G GI
Sbjct: 125 ALEQATEAAGKQDVRIAGGAAVVQQFLEAGLIDELQIHIAPVLLG-DGIRLFDNMNLEPN 183
Query: 337 NFMCVRR 343
R
Sbjct: 184 KLKIKRV 190
>gi|149917706|ref|ZP_01906202.1| Deoxycytidylate deaminase [Plesiocystis pacifica SIR-1]
gi|149821488|gb|EDM80888.1| Deoxycytidylate deaminase [Plesiocystis pacifica SIR-1]
Length = 154
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 34/108 (31%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTS-TNPSVACLIV-KDGIVIGRGVTAYGGCP----- 53
M + +D RF L +R G + + V C++V D + G G P
Sbjct: 1 MSL-KWDRRF----LELARHISGWSKDPSTQVGCVVVGPDREIRSAGF---NGLPRGIED 52
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ A G +G TAYVT PC+
Sbjct: 53 SAKRLQDRALKYPLICHAEENAIMHAARIGVALKGCTAYVTWPPCTRC 100
>gi|229120299|ref|ZP_04249549.1| Enzyme [Bacillus cereus 95/8201]
gi|228663109|gb|EEL18699.1| Enzyme [Bacillus cereus 95/8201]
Length = 179
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 101 EFTEKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 158
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 159 HLTLTDTKRFGQFVNLYYKVK 179
>gi|257057632|ref|YP_003135464.1| tRNA-adenosine deaminase [Saccharomonospora viridis DSM 43017]
gi|256587504|gb|ACU98637.1| tRNA-adenosine deaminase [Saccharomonospora viridis DSM 43017]
Length = 147
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA---- 63
AL F+ VG T+ P A + DG ++ A HAEV AL EA
Sbjct: 5 RVALGFAERAVG-TADVPIGAAVFSPDGRLLAGAHNARERLGDPTAHAEVLALREAARVH 63
Query: 64 --GEEARGATAYVTLEPCSHY 82
G G T VT+EPC+
Sbjct: 64 GDGWRLEGCTLAVTVEPCTMC 84
>gi|223994971|ref|XP_002287169.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976285|gb|EED94612.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 359
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L RG+ ++VEGGAA A +F+N R VD IL R+ + E E+
Sbjct: 267 IIDDLAKRGLNHIMVEGGAATARAFLNERAVDRAILVRASVEFQEPKPAQIDEDTLKAAE 326
Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQE 363
+ GSD+ + L +
Sbjct: 327 LQMIGTTNMGSDIVEYWSRNELPWPD 352
>gi|262341257|ref|YP_003284112.1| cytidine/deoxycytidylate deaminase family protein [Blattabacterium
sp. (Blattella germanica) str. Bge]
gi|262272594|gb|ACY40502.1| cytidine/deoxycytidylate deaminase family protein [Blattabacterium
sp. (Blattella germanica) str. Bge]
Length = 148
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 19/155 (12%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65
M AL+ + N + I + +VI + T HAE+ + A
Sbjct: 1 MKIALKEAFIAF---HKNEVPIGAAITYEDVVIAKAHNLTETFSNITAHAEMLVINLASN 57
Query: 66 EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
R T YVTLEPC CA + I RVV + +R L
Sbjct: 58 YLRNKYIKKCTLYVTLEPCI------MCAGALFLSQIGRVVCGAPNNSIRGFSYSGIKLH 111
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
K V +M+++ K + + + ++ LK
Sbjct: 112 PKTKFVSGIMKNQCKALIQKFFFFKRIQKHQKNLK 146
>gi|182437962|ref|YP_001825681.1| hypothetical protein SGR_4169 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778598|ref|ZP_08237863.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|178466478|dbj|BAG20998.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658931|gb|EGE43777.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 188
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
L GGA + SF + L+D +Y +++G G + + V FG+ V
Sbjct: 121 LAVGGADLLESFRRADLIDEYRIYVHPVILGRGRR--FFRDAEERQMLRLVETRTFGNGV 178
Query: 351 -CLEY 354
L Y
Sbjct: 179 AMLRY 183
>gi|229171429|ref|ZP_04299014.1| Enzyme [Bacillus cereus MM3]
gi|228612133|gb|EEK69370.1| Enzyme [Bacillus cereus MM3]
Length = 180
Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E N FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EINLTLTDTKRFGQF 171
Query: 350 VCLEYIGKN 358
V L Y K
Sbjct: 172 VNLYYKEKK 180
>gi|239905201|ref|YP_002951940.1| putative dCMP deaminase [Desulfovibrio magneticus RS-1]
gi|239795065|dbj|BAH74054.1| putative dCMP deaminase [Desulfovibrio magneticus RS-1]
Length = 153
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 33/107 (30%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV---------------------- 46
FM A + L V + V+D ++ G
Sbjct: 10 YFMRIAYLVAERSTCLRRK---VGAVAVRDRRILATGYNGSPTGTAHCLDIGCLREKLGI 66
Query: 47 -----TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + + G GA Y T +PC +
Sbjct: 67 PSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLICTKM 113
>gi|224475513|ref|YP_002633119.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222420120|emb|CAL26934.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 236
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGS 348
GG V SF LVD I + + +V P+ + + + + +
Sbjct: 168 GGGGVNWSFFEQGLVDEISVIIAPVVDDHFNRPNLFDNNDKDQSDVIQKYKIHHVEQLDG 227
Query: 349 DVCLEYIG 356
D+ Y
Sbjct: 228 DIVWLYYK 235
>gi|99081767|ref|YP_613921.1| CMP/dCMP deaminase, zinc-binding [Ruegeria sp. TM1040]
gi|99038047|gb|ABF64659.1| CMP/dCMP deaminase zinc-binding [Ruegeria sp. TM1040]
Length = 144
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V +G V+ R HAEV A+ A E G YVTLEPC
Sbjct: 18 PVGAVLVSPEGKVVARAGNRTRELNDPTAHAEVLAIRAACAALGSERLLGHDLYVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 AMC 80
>gi|330825481|ref|YP_004388784.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans K601]
gi|329310853|gb|AEB85268.1| CMP/dCMP deaminase zinc-binding protein [Alicycliphilus
denitrificans K601]
Length = 358
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V ++V+ G VI G A HAE+ AL A G T YVTLEPC+
Sbjct: 28 PVGAVLVRGGEVIATGRNAPIAGHDPTAHAEIAALRAAAARLGNYRLDGCTLYVTLEPCA 87
Query: 81 HY 82
Sbjct: 88 MC 89
>gi|170757063|ref|YP_001780911.1| guanine deaminase [Clostridium botulinum B1 str. Okra]
gi|169122275|gb|ACA46111.1| guanine deaminase [Clostridium botulinum B1 str. Okra]
Length = 157
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVK+G VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKNGEVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|242018582|ref|XP_002429753.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Pediculus
humanus corporis]
gi|212514765|gb|EEB17015.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Pediculus
humanus corporis]
Length = 188
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 13/150 (8%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65
+M AL F+ + V C+ V D +I G HAE+ ++
Sbjct: 16 WMKIALGFAENALKNNEV--PVGCIFVYDNEIIANGANTVNETKNATRHAEMNCIDTV-- 71
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
++ + + + + V+ G + G
Sbjct: 72 -----LSWCKERNLNFTEVFKAMDVVVTVEPCIMCSAALFELKVKRITYGCKNYRFGGCS 126
Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
+ + + ++ S LK
Sbjct: 127 TVFDISKIYRNSNCVMVGGVYDEESINLLK 156
>gi|187935669|ref|YP_001884839.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum B str. Eklund 17B]
gi|187723822|gb|ACD25043.1| guanine deaminase [Clostridium botulinum B str. Eklund 17B]
Length = 157
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG +I H EV A+ +A + G Y T EPC
Sbjct: 25 PFGAAIVKDGEIIALANNTVISTNDPTAHGEVNAIRQACSKLSTFDLTGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|170088388|ref|XP_001875417.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650617|gb|EDR14858.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 164
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 31/148 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK------DGIVIGRGVTAY-GGCPHAEVQALEEA 63
M AL + + T T V C+I ++I G + G HAE AL +A
Sbjct: 1 MRLALLEAAKCIP-TPTAFCVGCVITTRPPQSTSSVIISTGHSRELFGNTHAEANALSKA 59
Query: 64 ----------------------GEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRV 100
+ Y TLEPC PC +I +RR
Sbjct: 60 HTLSVDQLRALFPTLDPSELDINTILSQSDVYTTLEPCSIRTSGLAPCVAALIGAKVRRC 119
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+ V +P V G + L + G+ V
Sbjct: 120 FIGVAEPLDFVECEGARKLKEAGVEVVW 147
>gi|124021920|ref|YP_001016227.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9303]
gi|123962206|gb|ABM76962.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9303]
Length = 238
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYF-GS 348
A +A S + + +VD + L + ++G P + G L + + + +
Sbjct: 159 AQLAASLLQADVVDELQLTLTPKLLGGMHAWVPFQGGGLPDDLGDAEAWHLQTVEPLTDN 218
Query: 349 DVCLEYIGKNL 359
++ L Y K +
Sbjct: 219 ELLLRYERKRV 229
>gi|228932076|ref|ZP_04094968.1| Enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228827659|gb|EEM73401.1| Enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 173
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
+ L Y K
Sbjct: 166 INLYYKVK 173
>gi|196041816|ref|ZP_03109105.1| dihydrofolate reductase family protein [Bacillus cereus NVH0597-99]
gi|196027310|gb|EDX65928.1| dihydrofolate reductase family protein [Bacillus cereus NVH0597-99]
Length = 173
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|298241420|ref|ZP_06965227.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297554474|gb|EFH88338.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 197
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 1/174 (0%)
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242
+ + + T A+ + + P + DS+
Sbjct: 20 NNDVTVMFPMMGGVFDTYNAELLRTADVHLVGRVSFELFHSFWPRVAENPDSEEWTPEQR 79
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
V++ +I D + + L + +L+ G + +
Sbjct: 80 ELSQAGRSVSPIVVSDTLTGNWPDISIIRRADAHQKIAELKRQAGKDILITGSRTLWNDL 139
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ LVD I L +V+G G+P+ + + + VR ++ L Y
Sbjct: 140 LAHDLVDEIHLMIGNVVLG-EGVPAFVGKPPASLRLVEVRSWKDSDNILLRYEV 192
>gi|297627118|ref|YP_003688881.1| CMP/dCMP deaminase, zinc-binding [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922883|emb|CBL57463.1| CMP/dCMP deaminase, zinc-binding [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 159
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ +G+++G G HAEV A+ A T VTLEPC
Sbjct: 34 PVGAVVLDGNGVLLGEGGNRREQDGDATAHAEVLAIRAACARRGAWRLDDCTLVVTLEPC 93
Query: 80 SHY 82
+
Sbjct: 94 TMC 96
>gi|256786485|ref|ZP_05524916.1| deaminase [Streptomyces lividans TK24]
Length = 151
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGI-VIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEP 78
V +++ DG V+ G HAEV A+ A G T VTLEP
Sbjct: 26 PVGAVVLAPDGRTVLSAGHNEREATGDPTAHAEVLAIRRAAGELGEWRLSGCTLVVTLEP 85
Query: 79 CSHY 82
C+
Sbjct: 86 CTMC 89
>gi|198431901|ref|XP_002131408.1| PREDICTED: similar to dCMP deaminase [Ciona intestinalis]
Length = 191
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 27/98 (27%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP------------- 53
FMS A ++ + V IV D ++G G GC
Sbjct: 33 YFMSVAFLSAQRSK---DPSTQVGACIVNDENKIVGIGYNGMPNGCHDDELPWSRTGDWL 89
Query: 54 --------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G +V L PC+
Sbjct: 90 DTKYPYVCHAEMNAIMNKNCSSVSGCRIFVALFPCNEC 127
>gi|284163518|ref|YP_003401797.1| bifunctional deaminase-reductase domain protein [Haloterrigena
turkmenica DSM 5511]
gi|284013173|gb|ADB59124.1| bifunctional deaminase-reductase domain protein [Haloterrigena
turkmenica DSM 5511]
Length = 184
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ + + GGAA+A SF+ LVD I L +++G G ++ E +
Sbjct: 105 LEERYDRIWLVGGAALAQSFLREGLVDEIRLTVVPVLLGGGIR--LFDDDGTEHTLETLE 162
Query: 343 RDYFGSDVC-LEY 354
F S + L Y
Sbjct: 163 CTSFESGLVELRY 175
>gi|223944391|gb|ACN26279.1| unknown [Zea mays]
Length = 154
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 33/160 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----------------GCP 53
M+ A + N V +V ++GI++G G + G P
Sbjct: 1 MAIAFLSAERSK---DPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWAKKSASGDP 57
Query: 54 ---------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAEV A+ A G YVT+ PC+ + + V
Sbjct: 58 LETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAK---IIIQSGVSEVIYFVEK 114
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
D V + LS G+ V + +I +
Sbjct: 115 KIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQIPIKFQEP 154
>gi|170761087|ref|YP_001786677.1| guanine deaminase [Clostridium botulinum A3 str. Loch Maree]
gi|169408076|gb|ACA56487.1| guanine deaminase [Clostridium botulinum A3 str. Loch Maree]
Length = 157
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEVIAVAHNTVIGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|156031052|ref|XP_001584851.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980]
gi|154700525|gb|EDO00264.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 277
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--SRLVDSIILYRSQIVIGEGGI---P 326
+L L + SL++EGGA + + + L+ SII+ + + +G+GG+ P
Sbjct: 181 KFSWCDILRALRDEDIESLMIEGGAGIINDMLARSHNLISSIIVTIAPVWLGKGGVVVTP 240
Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVC 351
V+ G DV
Sbjct: 241 ERENREKEALRLKGVKWIPLGQDVV 265
>gi|152112359|sp|Q4UJW9|Y1319_RICFE RecName: Full=Uncharacterized deaminase RF_1319
Length = 144
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEAG 64
M AL+ + + V +IV + +I HAE+ A+ EA
Sbjct: 1 MEQALKQA--GIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEIIAINEAC 58
Query: 65 -----EEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 59 NLISSKNLNDYDIYVTLEPCAMC 81
>gi|119961232|ref|YP_946898.1| cytosine deaminase [Arthrobacter aurescens TC1]
gi|119948091|gb|ABM07002.1| Cytosine deaminase [Arthrobacter aurescens TC1]
Length = 150
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--H 54
M + D F AA + ++ + + + + G VI G G P H
Sbjct: 1 MTETDNTLDPAF-EAAYQAAQKSLSEGGI--PIGAALARGGKVIASGHNERVQHGDPIAH 57
Query: 55 AEVQALEEAGEEA--RGATAYVTLEPCSHY 82
E+ AL AG + R T Y TL PC+
Sbjct: 58 GEMSALRAAGRQTSYRDTTLYTTLAPCAMC 87
>gi|312876091|ref|ZP_07736079.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
6A]
gi|311797077|gb|EFR13418.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
6A]
Length = 154
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGLPHCEEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|312792827|ref|YP_004025750.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179967|gb|ADQ40137.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 154
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGLPHCEEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|312128227|ref|YP_003993101.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311778246|gb|ADQ07732.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 154
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGLPHCEEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|148379269|ref|YP_001253810.1| guanine deaminase [Clostridium botulinum A str. ATCC 3502]
gi|153931455|ref|YP_001383643.1| guanine deaminase [Clostridium botulinum A str. ATCC 19397]
gi|153935940|ref|YP_001387192.1| guanine deaminase [Clostridium botulinum A str. Hall]
gi|148288753|emb|CAL82837.1| guanine deaminase [Clostridium botulinum A str. ATCC 3502]
gi|152927499|gb|ABS32999.1| guanine deaminase [Clostridium botulinum A str. ATCC 19397]
gi|152931854|gb|ABS37353.1| guanine deaminase [Clostridium botulinum A str. Hall]
Length = 157
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEVIAVAHNTVIGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|290956554|ref|YP_003487736.1| hydrolase [Streptomyces scabiei 87.22]
gi|260646080|emb|CBG69173.1| putative hydrolase [Streptomyces scabiei 87.22]
Length = 265
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G G+T LL EGG + I S ++D + L S ++ G+ + + K F
Sbjct: 190 AGLGLTRLLGEGGPRLLGQLIASDVLDELCLTVSPMLTAGDAQRIAGGPSVQVPKRFALA 249
Query: 342 RRDYFGSDVCLEYIG 356
G + Y
Sbjct: 250 SLLEEGGFLFGRYRR 264
>gi|262203299|ref|YP_003274507.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262086646|gb|ACY22614.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 186
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
L GGA +A ++ L+D L+ +IG G P ++ ++ FG+ V
Sbjct: 121 LTIGGANLAGQAFDAGLIDECQLFVWPSIIGGGK---PALPTGTRRDLELLQERRFGNGV 177
Query: 351 -CLEYIG 356
L Y
Sbjct: 178 ALLRYRV 184
>gi|198412532|ref|XP_002130499.1| PREDICTED: similar to dCMP deaminase [Ciona intestinalis]
Length = 191
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 27/98 (27%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGGCP------------- 53
FMS A ++ + V IV D ++G G GC
Sbjct: 33 YFMSVAFLSAQRSK---DPSTQVGACIVNDENKIVGIGYNGMPNGCHDDELSWSRTGDWL 89
Query: 54 --------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G +V L PC+
Sbjct: 90 DTKYPYVCHAEMNAIMNKNCSSVSGCRIFVALFPCNEC 127
>gi|206561430|ref|YP_002232195.1| putative guanine/cytidine deaminase [Burkholderia cenocepacia
J2315]
gi|198037472|emb|CAR53408.1| putative guanine/cytidine deaminase [Burkholderia cenocepacia
J2315]
Length = 159
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE----- 65
+R + +V T P ++V+DG V+ R V HAE+QA+ A +
Sbjct: 16 IRLAMENVRERKTWP-FGAVLVRDGKVLARSVNEVEATCDPSAHAEMQAVRAASKALGST 74
Query: 66 EARGATAYVTLEPCSHY 82
+ GA Y + PCS
Sbjct: 75 DLSGAVMYASGYPCSMC 91
>gi|55821713|ref|YP_140155.1| late competence protein required for DNA binding and uptake
[Streptococcus thermophilus LMG 18311]
gi|55823633|ref|YP_142074.1| late competence protein required for DNA binding and uptake
[Streptococcus thermophilus CNRZ1066]
gi|55737698|gb|AAV61340.1| late competence protein required for DNA binding and uptake
[Streptococcus thermophilus LMG 18311]
gi|55739618|gb|AAV63259.1| late competence protein required for DNA binding and uptake
[Streptococcus thermophilus CNRZ1066]
Length = 156
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
FM+ A S+ + V ++VKD +I G
Sbjct: 15 YFMANAELISKRSTCDRAF---VGAVLVKDKRIIATGYNGGVSEADNCNEVGHYMEDGHC 71
Query: 54 ----HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 72 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 107
>gi|54022202|ref|YP_116444.1| putative cytidine/deoxycytidylate deaminase [Nocardia farcinica
IFM 10152]
gi|54013710|dbj|BAD55080.1| putative cytidine/deoxycytidylate deaminase [Nocardia farcinica
IFM 10152]
Length = 159
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWHVGLTST-NPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQ 58
+ D + A+ + V ++ G + R A HAE+
Sbjct: 11 AADEAMIRVAIE----AAAAADPRDVPVGAVVFDAQGRELARAANAREASGDPTAHAEIL 66
Query: 59 ALEEA------GEEARGATAYVTLEPCSHY 82
AL A G GAT VTLEPC+
Sbjct: 67 ALRRAAQVHGDGWRLAGATLAVTLEPCTMC 96
>gi|46135871|ref|XP_389627.1| hypothetical protein FG09451.1 [Gibberella zeae PH-1]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 27/155 (17%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG--------GCPHA 55
FM AL ++ + V ++V G V+ G + G HA
Sbjct: 13 DHEAFMEFALTQAKKSPPAANK-FCVGAILVDAAKGKVLSTGYSLEYPRDYKGDPGTTHA 71
Query: 56 EVQALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVV 101
E + +E Y T+EPC+ G + + + V
Sbjct: 72 EQCCFIKIADEHNLPEERIHEVLPEDTVLYTTMEPCNERLSGNMTCTTRILRLKSAIKTV 131
Query: 102 VCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESEG 134
G + L G+ V +E
Sbjct: 132 YVGIKEPGTFIGHNEGQERLEANGVKVVFPVEHWR 166
>gi|312134555|ref|YP_004001893.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
owensensis OL]
gi|311774606|gb|ADQ04093.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
owensensis OL]
Length = 154
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGLPHCEEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|297203110|ref|ZP_06920507.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|297148300|gb|EDY61485.2| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 268
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCV 341
G T LL EGG + + + ++D + L S ++ G + + F
Sbjct: 193 AQLGHTRLLTEGGPRLLGQLVAAGVLDELCLTLSPMLTAGSAQRIAGGPSVAVPARFELD 252
Query: 342 RRDYFGSDVCLEYIG 356
+ Y
Sbjct: 253 SLLEEDGFLYSRYRR 267
>gi|195348175|ref|XP_002040626.1| GM22266 [Drosophila sechellia]
gi|194122136|gb|EDW44179.1| GM22266 [Drosophila sechellia]
Length = 191
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FM+ +L ++ V IV ++ G G P
Sbjct: 28 WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGY---NGFPRNCSDDVFPWS 81
Query: 54 --------------------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 82 KATKRSKKDDPLEDKKMYVVHAEANAILNTNGMSLSGTRLYTTLFPCNEC 131
>gi|218901845|ref|YP_002449679.1| dihydrofolate reductase family protein [Bacillus cereus AH820]
gi|218536058|gb|ACK88456.1| dihydrofolate reductase family protein [Bacillus cereus AH820]
Length = 173
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L G+ + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTEKLKGQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVK 173
>gi|30260803|ref|NP_843180.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Ames]
gi|47525928|ref|YP_017277.1| dihydrofolate reductase family protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49183641|ref|YP_026893.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Sterne]
gi|165872708|ref|ZP_02217337.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0488]
gi|167635134|ref|ZP_02393450.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0442]
gi|167640943|ref|ZP_02399201.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0193]
gi|170689033|ref|ZP_02880233.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0465]
gi|170708506|ref|ZP_02898948.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0389]
gi|177652802|ref|ZP_02935175.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0174]
gi|190568551|ref|ZP_03021457.1| dihydrofolate reductase family protein [Bacillus anthracis
Tsiankovskii-I]
gi|227816481|ref|YP_002816490.1| dihydrofolate reductase family protein [Bacillus anthracis str. CDC
684]
gi|229602007|ref|YP_002865247.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0248]
gi|254684274|ref|ZP_05148134.1| dihydrofolate reductase family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254722078|ref|ZP_05183867.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A1055]
gi|254738739|ref|ZP_05196442.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254742049|ref|ZP_05199736.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Kruger B]
gi|254754964|ref|ZP_05206998.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Vollum]
gi|254762305|ref|ZP_05214149.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Australia 94]
gi|30254252|gb|AAP24666.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Ames]
gi|47501076|gb|AAT29752.1| dihydrofolate reductase family protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49177568|gb|AAT52944.1| dihydrofolate reductase family protein [Bacillus anthracis str.
Sterne]
gi|164711569|gb|EDR17117.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0488]
gi|167511163|gb|EDR86551.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0193]
gi|167529393|gb|EDR92144.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0442]
gi|170126627|gb|EDS95512.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0389]
gi|170667018|gb|EDT17781.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0465]
gi|172081836|gb|EDT66905.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0174]
gi|190560345|gb|EDV14324.1| dihydrofolate reductase family protein [Bacillus anthracis
Tsiankovskii-I]
gi|227003375|gb|ACP13118.1| dihydrofolate reductase family protein [Bacillus anthracis str. CDC
684]
gi|229266415|gb|ACQ48052.1| dihydrofolate reductase family protein [Bacillus anthracis str.
A0248]
Length = 173
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|225862627|ref|YP_002748005.1| dihydrofolate reductase family protein [Bacillus cereus 03BB102]
gi|225786274|gb|ACO26491.1| dihydrofolate reductase family protein [Bacillus cereus 03BB102]
Length = 173
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|303245260|ref|ZP_07331544.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
gi|302493109|gb|EFL52971.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
Length = 152
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSR--WHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPHAEVQALEEA 63
M+ AL +R G V +++ G ++G +T + HAE+ AL +A
Sbjct: 1 MALALEKARGAAAQGEA----PVGAVVLSAAGELLGAAGNAPITRHDPTAHAEILALRQA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G+ VTLEPC
Sbjct: 57 AAHVGNYRLPGSIMAVTLEPCVMC 80
>gi|15646114|ref|NP_208296.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
gi|2314679|gb|AAD08541.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695]
Length = 344
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 69/358 (19%), Positives = 121/358 (33%), Gaps = 71/358 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A + R
Sbjct: 8 LEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGLARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R +
Sbjct: 185 RMNGDYHHG---KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + + + +A V + D
Sbjct: 242 PNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLP------------------------- 276
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+ +G +EGG + S + +D+++L+ +IGE + +P + L
Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFKALALKTPFKGRLL 328
>gi|333023754|ref|ZP_08451818.1| hypothetical protein STTU_1258 [Streptomyces sp. Tu6071]
gi|332743606|gb|EGJ74047.1| hypothetical protein STTU_1258 [Streptomyces sp. Tu6071]
Length = 262
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L L RG+ L EGG + I + VD + L S + L
Sbjct: 178 LRAELAARGLRRQLAEGGPDLLGRLIAADTVDELCLTVSPFLTAGEASRIAHAPQALTTP 237
Query: 338 FMCVRRDYFGSD--VCLEYIGK 357
D + Y+
Sbjct: 238 ARLRPASILAEDGFLFTRYVRD 259
>gi|303232398|ref|ZP_07319090.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Atopobium vaginae PB189-T1-4]
gi|302481482|gb|EFL44550.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Atopobium vaginae PB189-T1-4]
Length = 164
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
+ ++V +G +I R HAE A++ A E G T YVTLEPC
Sbjct: 39 PIGAVVVYNGAIIARAHNTREESTNPAGHAEFLAMQHAAETLQRWRLFGCTVYVTLEPCL 98
Query: 81 HY 82
Sbjct: 99 MC 100
>gi|227500311|ref|ZP_03930378.1| competence protein ComEB family protein [Anaerococcus tetradius
ATCC 35098]
gi|227217597|gb|EEI82909.1| competence protein ComEB family protein [Anaerococcus tetradius
ATCC 35098]
Length = 148
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCP------------ 53
FM A +R T V C++V + ++ G + G P
Sbjct: 10 EYFMKLAKTVARRG---TCDRAYVGCVLVNEENRIVSTGYNGSIKGNPHCDEVGHTMRDG 66
Query: 54 ------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + G + YVT PC +
Sbjct: 67 HCIATIHAEMNAILYCAKEGIATKNTICYVTHFPCLNC 104
>gi|169607048|ref|XP_001796944.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
gi|111065288|gb|EAT86408.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15]
Length = 255
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGI 325
D KK+L +L G+ S+++EGG AV + ++ LVDS+I+ + + +G+GG+
Sbjct: 181 KMDWKKILNVLAKEGIRSVMIEGGGAVINGLLSKENMGLVDSVIVTIAPVWLGKGGV 237
>gi|297569251|ref|YP_003690595.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296925166|gb|ADH85976.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 158
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S++ FM+ ++ T V ++V+D ++ G
Sbjct: 9 SWEEYFMAITDLVAQRA---TCVRRKVGAILVRDRRIVATGYNGAPSGIRHCLEVGCLRE 65
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + + + T PCS +
Sbjct: 66 ELAVPSGERHELCRGLHAEQNAIIQAALHGVSLQSSMLFCTNMPCSICSKM 116
>gi|241617471|ref|XP_002406922.1| tRNA-specific adenosine deaminase, putative [Ixodes scapularis]
gi|215500893|gb|EEC10387.1| tRNA-specific adenosine deaminase, putative [Ixodes scapularis]
Length = 188
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 4 SSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57
+ D M A + + + G V C++ G VI RG C HAE+
Sbjct: 18 TVDDDNGMDACFQLAEEALAAGEV----PVGCVMFYAGQVIARGRNRVNKTKNACRHAEM 73
Query: 58 QALEEA-----------GEEARGATAYVTLEPCSHY 82
+++ GE RG + +VT+EPC
Sbjct: 74 DCVDQVLDWCAERGLDTGEVFRGVSVFVTVEPCIMC 109
>gi|76811739|ref|YP_333930.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1710b]
gi|121599544|ref|YP_993329.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei SAVP1]
gi|124383998|ref|YP_001029233.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei NCTC 10229]
gi|126450143|ref|YP_001080836.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei NCTC 10247]
gi|167000596|ref|ZP_02266407.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei PRL-20]
gi|238562434|ref|ZP_04610071.1| tRNA-specific adenosine deaminase [Burkholderia mallei GB8 horse 4]
gi|254177488|ref|ZP_04884143.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei ATCC 10399]
gi|254189248|ref|ZP_04895759.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254200108|ref|ZP_04906474.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei FMH]
gi|254206447|ref|ZP_04912799.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei JHU]
gi|254259652|ref|ZP_04950706.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1710a]
gi|254358144|ref|ZP_04974417.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei 2002721280]
gi|76581192|gb|ABA50667.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1710b]
gi|121228354|gb|ABM50872.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei SAVP1]
gi|124292018|gb|ABN01287.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei NCTC 10229]
gi|126243013|gb|ABO06106.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei NCTC 10247]
gi|147749704|gb|EDK56778.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei FMH]
gi|147753890|gb|EDK60955.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei JHU]
gi|148027271|gb|EDK85292.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei 2002721280]
gi|157936927|gb|EDO92597.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160698527|gb|EDP88497.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei ATCC 10399]
gi|238522629|gb|EEP86072.1| tRNA-specific adenosine deaminase [Burkholderia mallei GB8 horse 4]
gi|243063523|gb|EES45709.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei PRL-20]
gi|254218341|gb|EET07725.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1710a]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|229089711|ref|ZP_04220972.1| Enzyme [Bacillus cereus Rock3-42]
gi|228693610|gb|EEL47312.1| Enzyme [Bacillus cereus Rock3-42]
Length = 179
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + + FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLMDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|261367306|ref|ZP_05980189.1| putative deoxycytidylate deaminase [Subdoligranulum variabile DSM
15176]
gi|282570909|gb|EFB76444.1| putative deoxycytidylate deaminase [Subdoligranulum variabile DSM
15176]
Length = 159
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 30/109 (27%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT--------- 47
M + +D FM AL + N V IV + ++ G
Sbjct: 1 MKRTDYISWDEYFMGIALLSAMRSKDN---NSQVGACIVSPENKILSLGYNGMPIGCNDD 57
Query: 48 ----AYGGCP---------HAEVQALEEAGEE-ARGATAYVTLEPCSHY 82
G H+E+ A+ + GA YVTL PC+
Sbjct: 58 DMPWEREGDDLNTKYMYVCHSELNAILNSPHNDLTGARMYVTLFPCNEC 106
>gi|213964528|ref|ZP_03392728.1| riboflavin biosynthesis protein RibD C- domain protein
[Corynebacterium amycolatum SK46]
gi|213952721|gb|EEB64103.1| riboflavin biosynthesis protein RibD C- domain protein
[Corynebacterium amycolatum SK46]
Length = 256
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL-- 334
L G ++VEGG + + VD + L S + +G G G +P E+
Sbjct: 171 WLAEHGYRDIVVEGGPTMYREAFENGCVDELFLTLSPMWVGNGPLTFGETAPDEDWNSTN 230
Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356
+ F S + L Y
Sbjct: 231 PQAFEVRDILRSDSHIFLRYSR 252
>gi|301165417|emb|CBW24988.1| putative nucleotide deaminase [Bacteriovorax marinus SJ]
Length = 158
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE 65
MS A+ + + + IV + G ++ + C HAE+ A+ EA +
Sbjct: 11 MSVAMDEAYKA--YSIDEVPIGAAIVDESGNILSQCHNEKEHCNDPCGHAEIIAIREACK 68
Query: 66 -----EARGATAYVTLEPCSHY 82
G T YVTLEPC
Sbjct: 69 KRGDWRLSGCTIYVTLEPCPMC 90
>gi|288871336|ref|ZP_06117248.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
hathewayi DSM 13479]
gi|288863846|gb|EFC96144.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium
hathewayi DSM 13479]
Length = 233
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ L + G+ +L++ GG + SFI + + D I + + G + +
Sbjct: 140 YSEALTKLKRLFGIETLMLGGGGVLNWSFIQAGMCDEISVVIAPCADGSAETQTLFQARA 199
Query: 334 -----LEKNFMCVRRDYFGSD-VCLEYIGKN 358
F D D V L Y+ K
Sbjct: 200 GLSTEEPVGFTLKSADVLEGDAVWLRYLVKE 230
>gi|229159729|ref|ZP_04287738.1| Enzyme [Bacillus cereus R309803]
gi|228623754|gb|EEK80571.1| Enzyme [Bacillus cereus R309803]
Length = 173
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ N FG
Sbjct: 108 IWMVGGGSLLKEFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-GINLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|324324688|gb|ADY19948.1| dihydrofolate reductase family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 173
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P + E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLF-QNKNPEIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|296450850|ref|ZP_06892600.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296879147|ref|ZP_06903142.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
gi|296260321|gb|EFH07166.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP08]
gi|296429690|gb|EFH15542.1| cytidine/deoxycytidylate deaminase [Clostridium difficile NAP07]
Length = 150
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
FM + T V +IV + ++ G G
Sbjct: 18 EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 74
Query: 52 ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE AL + G + + YVT PC +
Sbjct: 75 HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLNC 112
>gi|237748387|ref|ZP_04578867.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229379749|gb|EEO29840.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 241
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 8/168 (4%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
+ E G E + M I++DP K+ S I + V+ + + +
Sbjct: 65 TFDHGQSPKAESFDTFFGTCETARMCIVMDPKGKIRYSSDRIMGENIIVVLGESVSQSYL 124
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
L + DL K L L G+ ++++GG + SF+ + L+D + L
Sbjct: 125 EHLRELGISYLFAGRHGNDLNKALETLGEFGLRKIMLQGGGIINGSFLKAGLIDELSLLI 184
Query: 316 SQIVIGEGGIPSPL-------EEGYLEKNFMCVRRDYFGSDV-CLEYI 355
+ G GIP+ E +++ + V L Y
Sbjct: 185 YPGIDGRAGIPAVFEYFSEHGEHPAKDRSLELLSMKMLPHGVAWLRYR 232
>gi|4580029|gb|AAD24212.1|AF086638_2 CumB [Pseudomonas putida GB-1]
Length = 145
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
V ++V+ G VIG+G HAE+ A + G+T YVTLEPCS
Sbjct: 18 PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKAASNYRLPGSTLYVTLEPCS 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|317181190|dbj|BAJ58976.1| riboflavin biosynthesis protein [Helicobacter pylori F32]
Length = 344
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 125/359 (34%), Gaps = 73/359 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + G ++ +V +E++ K L + + + R K+A+
Sbjct: 128 VIATEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGR-FNLFKLALRM 186
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 187 NG-----DYCHGKITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKRSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+ +G +EGG + S + +D+++L+ +IGE + +P + L
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFNTLALKTPFKGRLL 328
>gi|226330324|ref|ZP_03805842.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
gi|225201119|gb|EEG83473.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ ++T L +G L ++GG V +F+N L+D +I+ R I++G G P E
Sbjct: 97 QNIITELNAKGFNELYIDGGVTV-QNFLNEDLIDQMIITRFPILLGG-GTPLF-GELKQP 153
Query: 336 KNFMCVRRDYFGSDVC-LEYIGKN 358
NF ++ + ++ Y+
Sbjct: 154 LNFKVIKNEILLENLVQTTYLRDK 177
>gi|298493071|ref|YP_003723248.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
gi|298234989|gb|ADI66125.1| CMP/dCMP deaminase zinc-binding protein ['Nostoc azollae' 0708]
Length = 194
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + + V +IVK+ V+ G + G H
Sbjct: 15 TWDEYFLMLAKLAATRSTCIAFP---VGAVIVKNKQVVATGYNGSPSGSAH 62
>gi|58263382|ref|XP_569101.1| dCMP deaminase [Cryptococcus neoformans var. neoformans JEC21]
gi|57223751|gb|AAW41794.1| dCMP deaminase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 273
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 32/113 (28%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------- 48
+D FM+ A S + V L+V+ ++ G
Sbjct: 126 WDTYFMTLASLASERSNCMKR---RVGALLVRSKRILSTGYNGTPRGTRNCNQGGCSRCN 182
Query: 49 ---YGGCP-------HAEVQALEEAGEEARG--ATAYVTLEPCSHYGRSPPCA 89
GG HAE AL EAG E G + Y PC
Sbjct: 183 GSARGGEALNECLCLHAEENALLEAGRERIGDDSVIYCNTCPCLRCSVKIVQC 235
>gi|149277396|ref|ZP_01883537.1| possible reductase [Pedobacter sp. BAL39]
gi|149231629|gb|EDM37007.1| possible reductase [Pedobacter sp. BAL39]
Length = 191
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
L A ++ + G +L G ++A + LVD
Sbjct: 89 CSKTLTQAPWGSWEPARIVQSNLSHEINILKQEEGKNIVLW-GSLSLASALTMEGLVDEF 147
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
IL +++G G + + + FG+ V L Y
Sbjct: 148 ILMVCPVMLGGG--RTVFPQRSEASRLQLLDSRTFGNGVVMLHY 189
>gi|126659653|ref|ZP_01730783.1| hypothetical protein CY0110_25426 [Cyanothece sp. CCY0110]
gi|126619099|gb|EAZ89838.1| hypothetical protein CY0110_25426 [Cyanothece sp. CCY0110]
Length = 186
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 1 MPV-----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
M ++D F+ A + L V +IVKD V+ G + G H
Sbjct: 1 MTFLEEQRPTWDEYFIMIAKLAATRSTCLAFP---VGAVIVKDKQVLATGYNGSPSGSAH 57
>gi|120602899|ref|YP_967299.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio vulgaris DP4]
gi|120563128|gb|ABM28872.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio vulgaris
DP4]
Length = 176
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M + FM + V + VKD ++ G
Sbjct: 1 MSRMPWPDYFMQITYLVAERSTCTRRK---VGAIAVKDKRILATGYNGAPSNVAHCLEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G G+ Y T +PC +
Sbjct: 58 CLREQLGVPSGQRHEICRGLHAEQNVIIQAAIHGVSLTGSEIYCTTQPCLICTKM 112
>gi|27367425|ref|NP_762952.1| dihydrofolate reductase [Vibrio vulnificus CMCP6]
gi|27358994|gb|AAO07942.1|AE016811_183 Dihydrofolate reductase [Vibrio vulnificus CMCP6]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L +G L ++GG V SF+ L+D +I+ +++G GIP N
Sbjct: 99 MVAQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGA-GIPLF-GRLPKALN 155
Query: 338 FMCVRRDYFGSD-VCLEYIG 356
F + + V Y+
Sbjct: 156 FKHIHAERLADHMVKNHYVR 175
>gi|332670626|ref|YP_004453634.1| bifunctional deaminase-reductase domain-containing protein
[Cellulomonas fimi ATCC 484]
gi|332339664|gb|AEE46247.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
ATCC 484]
Length = 274
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
RG++ +L EGG ++ + + LVD + S +++G
Sbjct: 196 RGLSHVLAEGGPSLLGQLLEADLVDELCATSSPVLVGGPA 235
>gi|239627103|ref|ZP_04670134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridiales
bacterium 1_7_47_FAA]
gi|239517249|gb|EEQ57115.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridiales
bacterium 1_7_47FAA]
Length = 195
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG- 332
+ L+ + G+ +L++ GG + SFI + + D I + + G + +
Sbjct: 99 YDEALMKLKHLFGIETLMLGGGGVLNWSFIQAGMCDEISVVIAPCADGSTKTQTLFQTKE 158
Query: 333 ----YLEKNFMCVRRDYF-GSDVCLEYIGKN 358
F D G V L Y+ K+
Sbjct: 159 GLSTDEPVGFTLKSADVLTGDAVWLRYLVKS 189
>gi|153853661|ref|ZP_01995041.1| hypothetical protein DORLON_01032 [Dorea longicatena DSM 13814]
gi|149753816|gb|EDM63747.1| hypothetical protein DORLON_01032 [Dorea longicatena DSM 13814]
Length = 162
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A N V C IV +D ++ G
Sbjct: 10 SWDEYFMGVAKLSGMRSK---DPNTQVGCCIVSQDNKILSMGYNGLPTGCSDDVFPWGRE 66
Query: 47 ------TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 67 GDDPLETKYVYTVHSELNAILNYRGGSLEGAKLYVSLFPCNEC 109
>gi|126662522|ref|ZP_01733521.1| putative deoxycytidylate deaminase [Flavobacteria bacterium BAL38]
gi|126625901|gb|EAZ96590.1| putative deoxycytidylate deaminase [Flavobacteria bacterium BAL38]
Length = 142
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + V +IVK+ ++I G G P
Sbjct: 10 DKAYLRIAKEWGNLSYCQRKK---VGAIIVKNKMIISDGY---NGTPSGFENCCEDDANI 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + AT Y+TL PC
Sbjct: 64 TKWYVLHAEANAILKVARSTQSCEDATLYITLSPCKDCS 102
>gi|254198049|ref|ZP_04904471.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei S13]
gi|169654790|gb|EDS87483.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei S13]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|321313272|ref|YP_004205559.1| putative oxidoreductase [Bacillus subtilis BSn5]
gi|320019546|gb|ADV94532.1| putative oxidoreductase [Bacillus subtilis BSn5]
Length = 210
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S +L PV + V + + + L +++ +
Sbjct: 53 STYEHVKVLTPVFPYQDKTCYVFTGSPDSYQDEHVTFINEGARAFTARLKQEKGSNIWIA 112
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GGA + + F+ +D I+ +V+G GIP E E FG
Sbjct: 113 GGAELVNDFMKEDAIDEFIITVIPVVLGS-GIPLFHE-LTNETKLRLKGTKQFGQ 165
>gi|153838864|ref|ZP_01991531.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
parahaemolyticus AQ3810]
gi|149747692|gb|EDM58602.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
parahaemolyticus AQ3810]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L ++GG + +F+ L+D +++ R I++G G + NF ++ +
Sbjct: 106 KGFNELYIDGGMTI-QNFLKEDLIDKMVITRFPILLGGGA--PLFGDLEQPLNFKVIKSE 162
Query: 345 -YFGSDVCLEYIGKN 358
G+ V Y+ +
Sbjct: 163 VVLGTLVQTTYVRER 177
>gi|126441141|ref|YP_001059426.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 668]
gi|126454685|ref|YP_001066697.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1106a]
gi|134277676|ref|ZP_01764391.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 305]
gi|167739120|ref|ZP_02411894.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 14]
gi|217421765|ref|ZP_03453269.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 576]
gi|237812753|ref|YP_002897204.1| tRNA-specific adenosine deaminase [Burkholderia pseudomallei
MSHR346]
gi|242317933|ref|ZP_04816949.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1106b]
gi|126220634|gb|ABN84140.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 668]
gi|126228327|gb|ABN91867.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1106a]
gi|134251326|gb|EBA51405.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 305]
gi|217395507|gb|EEC35525.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 576]
gi|237506312|gb|ACQ98630.1| tRNA-specific adenosine deaminase [Burkholderia pseudomallei
MSHR346]
gi|242141172|gb|EES27574.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1106b]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|319440385|ref|ZP_07989541.1| dihydrofolate reductase [Corynebacterium variabile DSM 44702]
Length = 158
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ V GG +A F+++ L+D I L+ S + + +G S V+ G
Sbjct: 91 VWVMGGGDLAGQFLDAGLLDEITLHLSPVFLAKG--KSLFPRDLASDRLTLVQARQIGQF 148
Query: 350 VCLEYI 355
+ +
Sbjct: 149 IEATWR 154
>gi|167824713|ref|ZP_02456184.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 9]
gi|226200116|ref|ZP_03795662.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|225927800|gb|EEH23841.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei Pakistan 9]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|37677190|ref|NP_937586.1| dihydrofolate reductase [Vibrio vulnificus YJ016]
gi|37201735|dbj|BAC97556.1| dihydrofolate reductase [Vibrio vulnificus YJ016]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L +G L ++GG V SF+ L+D +I+ +++G GIP N
Sbjct: 99 VVEQLHQQGYQRLYIDGGKTV-QSFLAEDLIDEMIITTIPVLLGA-GIPLF-GSLPKALN 155
Query: 338 FMCVRRDYFGSD-VCLEYIG 356
F + V Y+
Sbjct: 156 FKHIHAQRLADHMVKNHYVR 175
>gi|303257995|ref|ZP_07344004.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
bacterium 1_1_47]
gi|302859338|gb|EFL82420.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales
bacterium 1_1_47]
Length = 138
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 31/108 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + + +M+ A ++ V C+IVK+ +I G G P
Sbjct: 1 MDIKKDNEMYMTIAQIAAQRSYAKRLK---VGCVIVKNHSIISFGW---NGMPTGYDNCC 54
Query: 54 ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + G + GA ++T PC H
Sbjct: 55 EYEVDGKLVTRPEVQHAELNAIAKLAQNGYSSNGAKIFITHSPCIHCS 102
>gi|296129579|ref|YP_003636829.1| bifunctional deaminase-reductase domain protein [Cellulomonas
flavigena DSM 20109]
gi|296021394|gb|ADG74630.1| bifunctional deaminase-reductase domain protein [Cellulomonas
flavigena DSM 20109]
Length = 262
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRR 343
RG+ +L EGG + + + +VD + L S +++ G+ P+ +
Sbjct: 181 RGLPHVLAEGGPRLLADLLAADVVDELHLTTSALLLAGDARRPATGVPLAAPRGARLRHL 240
Query: 344 DYFGSDVCLE 353
D L
Sbjct: 241 LRATDDTLLT 250
>gi|260900533|ref|ZP_05908928.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus AQ4037]
gi|308107071|gb|EFO44611.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus AQ4037]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L ++GG + +F+ L+D +++ R I++G G + NF + +
Sbjct: 106 KGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGA--PLFGDLQQPLNFKVTKSE 162
Query: 345 YFGSDVC-LEYIGKN 358
+ Y+ +
Sbjct: 163 VVLDTLVQTTYVRER 177
>gi|254297249|ref|ZP_04964702.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 406e]
gi|157807925|gb|EDO85095.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 406e]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|328471033|gb|EGF41944.1| hypothetical protein VP10329_09562 [Vibrio parahaemolyticus 10329]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L ++GG + +F+ L+D +++ R I++G G+P + NF + +
Sbjct: 106 KGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGG-GVPLF-GDLAQPLNFKVTKSE 162
Query: 345 YFGSDVC-LEYIGKN 358
+ Y+ +
Sbjct: 163 VVLDTLVQTTYVRER 177
>gi|167903219|ref|ZP_02490424.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei NCTC 13177]
gi|254179364|ref|ZP_04885963.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1655]
gi|184209904|gb|EDU06947.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 1655]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|11245466|gb|AAG33626.1|AF312392_1 cytosine deaminase-uracil phosphoribosyltransferase fusion protein
[synthetic construct]
Length = 373
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG--GCP--HAEVQ 58
S +D + M A + P CLI KDG V+GRG G H E+
Sbjct: 8 SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 67 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF---------KSK 117
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 118 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152
>gi|302343811|ref|YP_003808340.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
2075]
gi|301640424|gb|ADK85746.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM
2075]
Length = 167
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 38/101 (37%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D +++ A +R L +IVKD ++ G G P
Sbjct: 8 DEYYLNIAREVARRGTCLRRQY---GAVIVKDDQIVSTGY---AGAPRGVANCVDLGRCL 61
Query: 54 ------------------HAEVQA-LEEAGEEARGATAYVT 75
HAE+ A + + + AT Y+
Sbjct: 62 REEMAVPSGQRYELCRSVHAEMNAVIHASRAQTMDATLYLA 102
>gi|260587372|ref|ZP_05853285.1| putative deoxycytidylate deaminase [Blautia hansenii DSM 20583]
gi|331083672|ref|ZP_08332783.1| hypothetical protein HMPREF0992_01707 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542239|gb|EEX22808.1| putative deoxycytidylate deaminase [Blautia hansenii DSM 20583]
gi|330403883|gb|EGG83435.1| hypothetical protein HMPREF0992_01707 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 161
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YG 50
S+D FM A N V IV +D ++ G
Sbjct: 10 SWDEYFMGVAKLSGMRSK---DPNSQVGACIVSQDNKILSMGYNGFPMGCSDDEFPWARE 66
Query: 51 GC---------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GA YV+L PC+
Sbjct: 67 GEELDTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNEC 108
>gi|210614123|ref|ZP_03290059.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
gi|210150824|gb|EEA81832.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787]
Length = 162
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-------------AYG 50
S+D FM A+ + V C IV +D ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPSTQVGCCIVSQDNKILSMGYNGFPIGCSDDEFPWERE 66
Query: 51 G----------CPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
G H+E+ A+ +G GA YV+L PC+
Sbjct: 67 GDDPLETKYLYSTHSELNAILNYSGGSLAGAKLYVSLFPCNEC 109
>gi|229492959|ref|ZP_04386754.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis
SK121]
gi|229319989|gb|EEN85815.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis
SK121]
Length = 166
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--H 54
M S DA ++ AL +R +G + ++ D V+GR T G H
Sbjct: 1 MMFSPQDA--LAVALDVAREGMELGE----MPIGAVVFDDDRVLGRAYTQERALGRRVVH 54
Query: 55 AEVQALEEAGEEA------RGATAYVTLEPCSHY 82
A++QAL +A E T V LEPC
Sbjct: 55 ADLQALLQADEALGFTRASGELTLAVNLEPCLMC 88
>gi|322434724|ref|YP_004216936.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321162451|gb|ADW68156.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 177
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 12/129 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-- 293
+ P TE D + K I+ L+ + + L E
Sbjct: 52 MRYWDEDLPDWNTTERDYAAAWRSKPKWVISRSLTSVGPNATLIADDIETAIRKLKTEQT 111
Query: 294 -----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GG +A S + L+D +Y +V+G G P + D G
Sbjct: 112 GELEIGGPDLAQSLTQAGLIDEYQIYLRPVVLGS-GKPFFTAP---PPPLRLIASDPLGE 167
Query: 349 D-VCLEYIG 356
+ + L Y+
Sbjct: 168 NIIRLTYVP 176
>gi|49473908|ref|YP_031950.1| nitrogen fixation protein [Bartonella quintana str. Toulouse]
gi|49239411|emb|CAF25749.1| Nitrogen fixation protein [Bartonella quintana str. Toulouse]
Length = 148
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M ++ M AL ++W V +I +I R AY HAE
Sbjct: 1 MILTP-----MEIALLEAQWA--EKKDEVPVGAVITHGQSIIARTGNYIKAAYDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++ + A E YVTLEPC+
Sbjct: 54 MRVIRMACETFQSERLPDCDLYVTLEPCAMC 84
>gi|256852104|ref|ZP_05557491.1| tRNA-adenosine deaminase [Lactobacillus jensenii 27-2-CHN]
gi|260661326|ref|ZP_05862239.1| tRNA-adenosine deaminase [Lactobacillus jensenii 115-3-CHN]
gi|282934787|ref|ZP_06340025.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
gi|256615516|gb|EEU20706.1| tRNA-adenosine deaminase [Lactobacillus jensenii 27-2-CHN]
gi|260547781|gb|EEX23758.1| tRNA-adenosine deaminase [Lactobacillus jensenii 115-3-CHN]
gi|281301150|gb|EFA93456.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii 208-1]
Length = 174
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHA 55
M S +M A + ++V G VIGRG HA
Sbjct: 1 MFSSEEKKHYMELAFA--EAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A+ EA + + +VTLEPC+
Sbjct: 59 EILAINEACKTLNSWRLINCSLFVTLEPCAMC 90
>gi|228913338|ref|ZP_04076971.1| Enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228846247|gb|EEM91266.1| Enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 179
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|152964439|ref|YP_001360223.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
SRS30216]
gi|151358956|gb|ABS01959.1| CMP/dCMP deaminase zinc-binding [Kineococcus radiotolerans
SRS30216]
Length = 144
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSR--WHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL +R G V ++V G V+G G HAEV AL A
Sbjct: 1 MGLALDEARACLATGDV----PVGAVVVDAAGTVLGAGRNEREAAGDPTAHAEVLALRAA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 57 ARARGEWRLTGCTLVVTLEPCVMC 80
>gi|118476335|ref|YP_893486.1| dihydrofolate reductase family protein [Bacillus thuringiensis str.
Al Hakam]
gi|118415560|gb|ABK83979.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 179
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|65318075|ref|ZP_00391034.1| COG0262: Dihydrofolate reductase [Bacillus anthracis str. A2012]
Length = 179
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 114 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 171
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 172 VNLYYKVK 179
>gi|167919469|ref|ZP_02506560.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei BCC215]
Length = 198
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|154496071|ref|ZP_02034767.1| hypothetical protein BACCAP_00355 [Bacteroides capillosus ATCC
29799]
gi|150274626|gb|EDN01690.1| hypothetical protein BACCAP_00355 [Bacteroides capillosus ATCC
29799]
Length = 256
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 33/97 (34%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLIV-------------KDGIVIGRGVTAYG 50
+M AL +R + G V C++V ++
Sbjct: 2 DHEGYMRQALDLAREAMEAGEV----PVGCVVVWEGRVVGRGRNRREENK---------D 48
Query: 51 GCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ A+ EA G A YVTLEPC+
Sbjct: 49 ALAHAELMAIHEANQTLGGWRLHKADLYVTLEPCAMC 85
>gi|332674278|gb|AEE71095.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 83]
Length = 344
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 68/359 (18%), Positives = 124/359 (34%), Gaps = 73/359 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------ 63
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + G ++ +V +E++ K L + + + R K+A+
Sbjct: 128 VIATEENEAKKGGLARLKKARIDGVVCEGLENKAKDLLLPFRIMEQKGR-FNLFKLALRM 186
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 187 NG-----DYYHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+ +G +EGG + S + +D+++L+ +IGE + +P + L
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDTLLLHSHASMIGEAFNTIALKTPFKGRLL 328
>gi|124003856|ref|ZP_01688704.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microscilla marina ATCC 23134]
gi|123990911|gb|EAY30378.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microscilla marina ATCC 23134]
Length = 186
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG + SF+N LVD +I+ + +VIG G+P E V +
Sbjct: 118 KDIWLVGGGNLLTSFLNEGLVDEMIIAIAPVVIG-EGLPLF-PNVPQETTLELVDTTSYD 175
Query: 348 -SDVCLEYIGK 357
V L Y
Sbjct: 176 TGFVSLTYRVN 186
>gi|46579613|ref|YP_010421.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|46449028|gb|AAS95680.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|311233417|gb|ADP86271.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio vulgaris
RCH1]
Length = 176
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M + FM + V + VKD ++ G
Sbjct: 1 MSRMPWPDYFMQITYLVAERSTCTRRK---VGAIAVKDKRILATGYNGAPSNVAHCLEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G G+ Y T +PC +
Sbjct: 58 CLREQLGVPSGQRHEICRGLHAEQNVIIQAAIHGVSLTGSEIYCTTQPCLICTKM 112
>gi|320009620|gb|ADW04470.1| CMP/dCMP deaminase zinc-binding protein [Streptomyces
flavogriseus ATCC 33331]
Length = 142
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + ++ + V +++ DG ++ G HAEV AL A
Sbjct: 1 MRQALDEAAQAA--SAGDVPVGAVVLGPDGALLATGHNEREASHDPTAHAEVLALRRAAA 58
Query: 64 ---GEEARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ALGSWRLTGCTLVVTLEPCTMC 80
>gi|222528649|ref|YP_002572531.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
6725]
gi|222455496|gb|ACM59758.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
6725]
Length = 148
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGLPHCDEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|241202989|ref|YP_002974085.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240856879|gb|ACS54546.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 185
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S + + + D LT L ++L+
Sbjct: 61 SYWPTAEGEGEIKTYMNGIAKIAVSRTMSEPGWNNARVVSDPIPELTRLKQEDGKTILIF 120
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A +A S + + L+D + + +++G G EG L G V L
Sbjct: 121 GSAELADSLLKAGLIDEVRVCLVPVILGGGNPLFKQAEGQLPLKL-IESSTTEGGAVILR 179
Query: 354 YIG 356
Y
Sbjct: 180 YEP 182
>gi|13471997|ref|NP_103564.1| riboflavin-specific deaminase [Mesorhizobium loti MAFF303099]
gi|14022742|dbj|BAB49350.1| probable riboflavin-specific deaminase [Mesorhizobium loti
MAFF303099]
Length = 232
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFM 339
G+ LL+EGGA + SF + LVD + L + + G +E +
Sbjct: 152 ELGIRRLLLEGGAGINGSFFAAGLVDELSLLVAPALDARAGNQGFVEFGESGLAGKMQLS 211
Query: 340 CVRRDYF 346
+
Sbjct: 212 LTSCETL 218
>gi|302695431|ref|XP_003037394.1| hypothetical protein SCHCODRAFT_46727 [Schizophyllum commune H4-8]
gi|300111091|gb|EFJ02492.1| hypothetical protein SCHCODRAFT_46727 [Schizophyllum commune H4-8]
Length = 288
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 34/105 (32%), Gaps = 31/105 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK---DGIVIGRGVT---------AYGGCP 53
+DA FM+ A S + V ++V +I G GGCP
Sbjct: 128 WDAYFMTIASLASHRSNCMKR---RVGAVLVDVRGGNRIIATGYNGTPRGLTNCNAGGCP 184
Query: 54 --------------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 185 RCNTGMESVECICLHAEENALLEAGRERVGPGAVLYCNTCPCLKC 229
>gi|253581046|ref|ZP_04858307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847709|gb|EES75678.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 163
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----------------- 46
S+D FM A+ N V IV D ++ G
Sbjct: 12 SWDEYFMGVAMMSGMRSK---DPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWARE 68
Query: 47 -----TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ G GA YV+L PC+
Sbjct: 69 GDSLHTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNEC 110
>gi|229101410|ref|ZP_04232153.1| Enzyme [Bacillus cereus Rock3-28]
gi|228681986|gb|EEL36120.1| Enzyme [Bacillus cereus Rock3-28]
Length = 174
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
N FG V L Y K+
Sbjct: 153 NLTLTDTKCFGQFVNLYYKVKS 174
>gi|225012149|ref|ZP_03702586.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
gi|225003704|gb|EEG41677.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A]
Length = 143
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 28/99 (28%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53
D ++ A + + V LIVKD ++I G G P
Sbjct: 10 DKAYLKMAKTWGQLSYCDRKK---VGALIVKDRMIISDGY---NGTPSGFENVCEDEEHY 63
Query: 54 ------HAEVQALEEAG---EEARGATAYVTLEPCSHYG 83
HAE A+ + + +GAT Y+TL PC
Sbjct: 64 TKWYVLHAEANAILKVASSTQSCKGATLYITLSPCKDCS 102
>gi|113475737|ref|YP_721798.1| CMP/dCMP deaminase [Trichodesmium erythraeum IMS101]
gi|110166785|gb|ABG51325.1| CMP/dCMP deaminase, zinc-binding [Trichodesmium erythraeum
IMS101]
Length = 180
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH 54
S+D F+ A + L V +IVKD V+ G G H
Sbjct: 10 SWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDKQVLATGYNGPPSGSNH 57
>gi|319441800|ref|ZP_07990956.1| putative cytosine/adenosine deaminase [Corynebacterium variabile
DSM 44702]
Length = 167
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALE 61
D M+ AL + + V ++ DG + HAEV AL
Sbjct: 22 DRARMARALEVAAS---TPDGDVPVGAVVYAPDGTELAAATNRREADADPTAHAEVLALR 78
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A T VTLEPC+
Sbjct: 79 AATAAHGDAWRLTDCTLVVTLEPCAMC 105
>gi|42779795|ref|NP_977042.1| dihydrofolate reductase family protein [Bacillus cereus ATCC 10987]
gi|42735712|gb|AAS39650.1| dihydrofolate reductase family protein [Bacillus cereus ATCC 10987]
Length = 173
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y +
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVR 173
>gi|71001942|ref|XP_755652.1| DRAP deaminase [Aspergillus fumigatus Af293]
gi|66853290|gb|EAL93614.1| DRAP deaminase, putative [Aspergillus fumigatus Af293]
Length = 215
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 28/105 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVT-AYG 50
M S ++ +L + TN V ++V KD ++ G T
Sbjct: 1 MTASP-HLDYLRQSLSLAERSPPR-PTNFRVGAILVSRKDGDLEFKDDRILSTGYTMELA 58
Query: 51 GCPHAEVQALEE----------------AGEEARGATAYVTLEPC 79
G HAE L E R YVT+EPC
Sbjct: 59 GNTHAEQCCLSNYAAVHSVPEDKVAEVLPAEPGRKLVMYVTMEPC 103
>gi|329903280|ref|ZP_08273412.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Oxalobacteraceae bacterium IMCC9480]
gi|327548444|gb|EGF33120.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Oxalobacteraceae bacterium IMCC9480]
Length = 228
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 18/228 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202
+ ++ + S D G + + + + DA + G T+
Sbjct: 1 MKPYVICHMMSSLDGHALTDGWDRPFKNNAGALYETLAKQFKFDAWICGRVTMQEIAHGE 60
Query: 203 -------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
P ++ + + +DPH K+ S + + V+ DD +
Sbjct: 61 GYPAGLATKPIPRTHYFANKDAACYAVAIDPHGKVEWKSNEALDSHVVAVVTEAVADDYL 120
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
L K + DL K++ +L G L+VEGG V+ SF+N+ LVD + +
Sbjct: 121 AYLQSIKVSYLFGGKTEIDLAKVVALLADELGTKRLIVEGGPHVSGSFVNAGLVDEVSVL 180
Query: 315 RSQIVIGEGGIPSPL----EEGYLEKNFMCVRRD-YFGSDVCLEYIGK 357
++ G G P+ E + G V L Y +
Sbjct: 181 VLPLIDGRGDHPASFEVSKETWTNPAYLTLTSAEIQEGGSVWLRYKKQ 228
>gi|295103971|emb|CBL01515.1| tRNA-adenosine deaminase [Faecalibacterium prausnitzii SL3/3]
Length = 166
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V ++ + G VI T HAE+ A++ A + G +VTLEPC
Sbjct: 24 PVGAVVARHGEVIATAHNTRETEKNALHHAELLAIDAACKALGGWRLWECELFVTLEPCP 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|225873364|ref|YP_002754823.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acidobacterium capsulatum ATCC 51196]
gi|225793789|gb|ACO33879.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Acidobacterium capsulatum ATCC 51196]
Length = 164
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V + V +G ++ RG HAE+ L A E G YVTLEPC+
Sbjct: 40 PVGAVAVVEGSILARGQNRVLRDVDPTAHAEMVVLRAAAEAIGNYRLTGCELYVTLEPCA 99
Query: 81 HY 82
Sbjct: 100 MC 101
>gi|254976414|ref|ZP_05272886.1| hypothetical protein CdifQC_13916 [Clostridium difficile QCD-66c26]
gi|255093799|ref|ZP_05323277.1| hypothetical protein CdifC_14236 [Clostridium difficile CIP 107932]
gi|255315551|ref|ZP_05357134.1| hypothetical protein CdifQCD-7_14404 [Clostridium difficile
QCD-76w55]
gi|255518214|ref|ZP_05385890.1| hypothetical protein CdifQCD-_13943 [Clostridium difficile
QCD-97b34]
gi|255651330|ref|ZP_05398232.1| hypothetical protein CdifQCD_14178 [Clostridium difficile
QCD-37x79]
Length = 97
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F+ L+D +Y I++G G S + G + N + G
Sbjct: 30 IWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKVSNIGEL 87
Query: 350 VCLEYIGK 357
V LEY K
Sbjct: 88 VKLEYSKK 95
>gi|315657779|ref|ZP_07910659.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491576|gb|EFU81187.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 180
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 14 ALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHAEVQALEEAG--- 64
A R ++ G P V ++ +GIV G G+ HAE+ AL EA
Sbjct: 40 AYRLAQKA-GRAGDIP-VGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALREAAGRL 97
Query: 65 --EEARGATAYVTLEPCSHY 82
+G T TLEPC+
Sbjct: 98 ERWNLKGCTLVATLEPCTMC 117
>gi|304390572|ref|ZP_07372525.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326328|gb|EFL93573.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 180
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 14 ALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHAEVQALEEAG--- 64
A R ++ G P V ++ +GIV G G+ HAE+ AL EA
Sbjct: 40 AYRLAQKA-GRAGDIP-VGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALREAAGRL 97
Query: 65 --EEARGATAYVTLEPCSHY 82
+G T TLEPC+
Sbjct: 98 ERWNLKGCTLVATLEPCTMC 117
>gi|260906121|ref|ZP_05914443.1| cytidine/deoxycytidine deaminase [Brevibacterium linens BL2]
Length = 148
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ +G VIGRG HAE+ A+ A E AT VTLEPC
Sbjct: 18 PVGAVVIDGNGAVIGRGHNRREVDQDPLGHAELMAMRNAAEVTGRWRLDDATLVVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 AMC 80
>gi|171743255|ref|ZP_02919062.1| hypothetical protein BIFDEN_02384 [Bifidobacterium dentium ATCC
27678]
gi|171278869|gb|EDT46530.1| hypothetical protein BIFDEN_02384 [Bifidobacterium dentium ATCC
27678]
Length = 213
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMC 340
GV + V GG + F+++ L+D + + + G G+ + + +
Sbjct: 137 EFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSAAFDGLPMNHRPVALKL 196
Query: 341 VRRDYFGSD-VCLEY 354
+ V L Y
Sbjct: 197 ESVTPYDDGAVWLRY 211
>gi|238061540|ref|ZP_04606249.1| CMP/dCMP deaminase [Micromonospora sp. ATCC 39149]
gi|237883351|gb|EEP72179.1| CMP/dCMP deaminase [Micromonospora sp. ATCC 39149]
Length = 172
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +I DG + G HAEV AL A E T VTLEPC
Sbjct: 50 PVGAVIYGPDGTELASGRNERELTGDPTAHAEVLALRRAAERLGRWRLDDCTLVVTLEPC 109
Query: 80 SHY 82
+
Sbjct: 110 TMC 112
>gi|68304978|gb|AAY89989.1| unknown [uncultured bacterium BAC13K9BAC]
Length = 157
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 30 SVACLIVKDG--IVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
V +I+KD VI G HAE+ AL+ A E +G + TLEP
Sbjct: 26 PVGAVIIKDSTFEVISSGYNKMKQNRSSIDHAEMLALKTAMTRLNNERLKGCSMITTLEP 85
Query: 79 CSHY 82
C
Sbjct: 86 CPMC 89
>gi|228477298|ref|ZP_04061936.1| ComE operon protein 2 [Streptococcus salivarius SK126]
gi|228251317|gb|EEK10488.1| ComE operon protein 2 [Streptococcus salivarius SK126]
Length = 151
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 25/96 (26%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------------GG-- 51
FM+ A S+ + V ++VKD +I G G
Sbjct: 10 YFMANAELISKRSTCDRAF---VGAVLVKDKRIIATGYNGGVSETDNCNEVGHYMEDGHC 66
Query: 52 --CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G + YVT PC +
Sbjct: 67 IRTVHAEMNALIQCAKEGISTKNTEIYVTHFPCINC 102
>gi|167032047|ref|YP_001667278.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida GB-1]
gi|166858535|gb|ABY96942.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida GB-1]
Length = 159
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
V ++V+ G VIG+G HAE+ A + G+T YVTLEPCS
Sbjct: 32 PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKAASNYRLPGSTLYVTLEPCS 91
Query: 81 HY 82
Sbjct: 92 MC 93
>gi|260683514|ref|YP_003214799.1| putative phage-related deoxycytidylate deaminase [Clostridium
difficile CD196]
gi|260687174|ref|YP_003218308.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile R20291]
gi|260209677|emb|CBA63397.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile CD196]
gi|260213191|emb|CBE04662.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile R20291]
Length = 150
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
FM + T V +IV + ++ G G
Sbjct: 18 EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 74
Query: 52 ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE AL + G + + YVT PC +
Sbjct: 75 HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLNC 112
>gi|67922330|ref|ZP_00515842.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Crocosphaera watsonii WH 8501]
gi|67855781|gb|EAM51028.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Crocosphaera watsonii WH 8501]
Length = 189
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 38/117 (32%)
Query: 1 MPV-----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
M ++ F+ A + L V +IVKD V+ G + G H
Sbjct: 1 MTFLEEQRPTWHEYFIMMAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPSGSAH 57
Query: 55 AEVQ-------------------ALE----------EAGEEARGATAYVTLEPCSHY 82
Q A+ + G GA+ YVTLEPC +
Sbjct: 58 CTAQGFCYPGLDSCDSPSGLPSRAIHAEANAIAQAAKHGISTHGASIYVTLEPCLYC 114
>gi|261252000|ref|ZP_05944574.1| dihydrofolate reductase [Vibrio orientalis CIP 102891]
gi|260938873|gb|EEX94861.1| dihydrofolate reductase [Vibrio orientalis CIP 102891]
Length = 88
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G L ++GG + SF+ L+D + + +++G G E + +
Sbjct: 8 EIVQNLNEQGYNDLYIDGGKTI-QSFLKEGLIDEMSITTMPVLLGGG--SPLFGELDMMQ 64
Query: 337 NFMCVRRD-YFGSDVCLEYIG 356
+F V + + V Y
Sbjct: 65 SFKLVESQIHLDAIVQTTYHR 85
>gi|119188441|ref|XP_001244827.1| hypothetical protein CIMG_04268 [Coccidioides immitis RS]
Length = 160
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 32/102 (31%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-------- 53
M A ++ + V C++VKD V+ G GGCP
Sbjct: 1 MQLASLAAQRSNCMKR---RVGCVLVKDRRVMSTGYNGTARNTRNCNQGGCPRCNLVQGT 57
Query: 54 ----------HAEVQALEEAGEE--ARGATAYVTLEPCSHYG 83
HAE AL EAG E G Y PC
Sbjct: 58 AQALSTCLCLHAEENALLEAGRERIGEGCILYCNTCPCLTCS 99
>gi|269120319|ref|YP_003308496.1| bifunctional deaminase-reductase domain protein [Sebaldella
termitidis ATCC 33386]
gi|268614197|gb|ACZ08565.1| bifunctional deaminase-reductase domain protein [Sebaldella
termitidis ATCC 33386]
Length = 188
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L T L + +++ + GGA ++F+ +L+D + +++G G PL E+
Sbjct: 98 DLTTELKQKSKSNIWLLGGAETVNAFLEKKLIDEYRIAIVPVILGTG---IPLFTSGAEE 154
Query: 337 NFMCVRRDYFGSDVCLEYIGKNL 359
N + + V L+Y K +
Sbjct: 155 NLDFKQVTEYDGIVELKYEKKKM 177
>gi|220912556|ref|YP_002487865.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
gi|219859434|gb|ACL39776.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 183
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 3/124 (2%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ +++ T +I + + ++ V
Sbjct: 56 YAWLMEHEPGKWPYPSTPCYVFTHHEHAAPPGSDITFVRGSVTEFADDFRADAAGRNIWV 115
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
GG +A F + L+D IIL +++G+G P+E G +
Sbjct: 116 VGGGNLAAQFAAAGLLDEIILSVIPVILGDGKRLLPIEGPT--PPLELTASRTLGRGIIE 173
Query: 353 -EYI 355
Y+
Sbjct: 174 SRYL 177
>gi|312623042|ref|YP_004024655.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203509|gb|ADQ46836.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 148
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPTGIPHCDEVGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNVPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSVIYTTTYPCVICAKM 111
>gi|282883351|ref|ZP_06291944.1| ComE operon protein 2 [Peptoniphilus lacrimalis 315-B]
gi|300813982|ref|ZP_07094275.1| putative ComE operon protein 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281296762|gb|EFA89265.1| ComE operon protein 2 [Peptoniphilus lacrimalis 315-B]
gi|300511876|gb|EFK39083.1| putative ComE operon protein 2 [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 139
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-GCPH-------- 54
S+D FM ++ + V C++V D ++ G G PH
Sbjct: 4 SWDEYFMEITQLVAQRSTCDRAF---VGCVLVNSDHRIVSTGYNGTASGNPHCIDVGHRM 60
Query: 55 ----------AEVQAL---EEAGEEARGATAYVTLEPCSHY 82
AE+ AL + G A+G+ YVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGIPAKGSICYVTHFPCLNC 101
>gi|326801594|ref|YP_004319413.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
gi|326552358|gb|ADZ80743.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
Length = 177
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L+ L ++ +GGA + + + L+D I+ I++G+G ++ E+
Sbjct: 97 ELVKRLKSENGKNIYCDGGAEIINELLKHDLIDEFIISVIPILLGDGTR--LFKDERPEQ 154
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
+ + + + L Y K
Sbjct: 155 MLELLTTKPYDTGLTQLHYRRKR 177
>gi|297205021|ref|ZP_06922417.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii JV-V16]
gi|297149599|gb|EFH29896.1| tRNA-specific adenosine deaminase [Lactobacillus jensenii JV-V16]
Length = 174
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHA 55
M S +M A + ++V G VIGRG HA
Sbjct: 1 MFSSEEKKHYMELAFA--EAKKAEAQDEVPIGAIVVDPKGQVIGRGYNRRELDNVATHHA 58
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
E+ A+ EA + + +VTLEPC+
Sbjct: 59 EILAINEACKTLNSWRLIDCSLFVTLEPCAMC 90
>gi|255655869|ref|ZP_05401278.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-23m63]
Length = 145
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
FM + T V +IV + ++ G G
Sbjct: 13 EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69
Query: 52 ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE AL + G + + YVT PC +
Sbjct: 70 HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLNC 107
>gi|172035303|ref|YP_001801804.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
51142]
gi|171696757|gb|ACB49738.1| putative cytidine/deoxycytidylate deaminase [Cyanothece sp. ATCC
51142]
Length = 180
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 38/117 (32%)
Query: 1 MPV-----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
M ++D F+ A + L V +IVKD ++ G + G H
Sbjct: 1 MTFLEEQRPTWDEYFIMIAKLAATRSTCLAFP---VGAVIVKDRQLLATGYNGSPSGTAH 57
Query: 55 AEVQ-------------------ALE----------EAGEEARGATAYVTLEPCSHY 82
Q A+ + G GA+ YVTLEPC
Sbjct: 58 CTAQGFCYPGLDSCDSSSSLPSRAIHAEANAIAQAAKYGISTHGASIYVTLEPCVSC 114
>gi|116071453|ref|ZP_01468721.1| putative riboflavin-specific deaminase [Synechococcus sp. BL107]
gi|116065076|gb|EAU70834.1| putative riboflavin-specific deaminase [Synechococcus sp. BL107]
Length = 232
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 17/149 (11%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
P +++ + + L ++ +
Sbjct: 93 QPAVVVVSRSHDFPQQWRFFRQPLERWLLAPKAPAQ----------GFDRWIPLGSSWPD 142
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L L GV L++ GGA++A + + VD++ L ++G P+E+G L
Sbjct: 143 RLGALRSLGVRRLVLLGGASLAAELLQADCVDALQLTLVPTLLGGDHTWLPVEQGLLPVQ 202
Query: 338 FMCV------RRDYFGS-DVCLEYIGKNL 359
M + + G ++ L Y + L
Sbjct: 203 MMELGAWGCDGVEDLGDGEMMLRYRRQRL 231
>gi|325292072|ref|YP_004277936.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
gi|325059925|gb|ADY63616.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3]
Length = 152
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
+ ++V DG VI R HAE+ + A E GA YVTLEPC+
Sbjct: 25 PIGAVLVMDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALEQERLPGADLYVTLEPCT 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|283455769|ref|YP_003360333.1| deaminase-reductase domain-containing protein [Bifidobacterium
dentium Bd1]
gi|283102403|gb|ADB09509.1| deaminase-reductase domain-containing protein [Bifidobacterium
dentium Bd1]
Length = 222
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMC 340
GV + V GG + F+++ L+D + + + G G+ + + +
Sbjct: 146 EFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSAAFDGLPMNHRPVALKL 205
Query: 341 VRRDYFGSD-VCLEY 354
+ V L Y
Sbjct: 206 ESVTPYDDGAVWLRY 220
>gi|322711515|gb|EFZ03088.1| hypothetical protein MAA_00162 [Metarhizium anisopliae ARSEF 23]
Length = 243
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL---VDSIILYRSQIVIGEGGIP- 326
D LL G+ S++VE G + +S ++ + +D +I+ + +G+GG+
Sbjct: 146 HHLDWNLLLVRFKENGLNSVMVEAGGQIINSLLSPQYQPNIDMVIVTIAPTWLGQGGVVL 205
Query: 327 ------SPLEEGYLEKNFMCVRRDYFGSDVCL 352
+ V+ FG DV L
Sbjct: 206 SPRRCFNDSGIAISAARLTGVKWYPFGDDVVL 237
>gi|146329465|ref|YP_001209489.1| adenosine deaminase [Dichelobacter nodosus VCS1703A]
gi|146232935|gb|ABQ13913.1| adenosine deaminase [Dichelobacter nodosus VCS1703A]
Length = 157
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D FM AL ++ P + ++V VI H+E+ L E
Sbjct: 3 DVDFMRLALEQAQLAA-EIGEIP-IGAVLVYQQQVIAANFNRTISACDPSAHSEILVLRE 60
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
+ + YVT+EPC
Sbjct: 61 GAQRIKNYRLTEMALYVTVEPCVMC 85
>gi|309808484|ref|ZP_07702383.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 01V1-a]
gi|308168312|gb|EFO70431.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 01V1-a]
Length = 157
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL S+ T V ++VKD +I G + G PH
Sbjct: 10 QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMVDGH 66
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ AL + G G YVT PC +
Sbjct: 67 CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCYNC 103
>gi|154273008|ref|XP_001537356.1| hypothetical protein HCAG_07665 [Ajellomyces capsulatus NAm1]
gi|150415868|gb|EDN11212.1| hypothetical protein HCAG_07665 [Ajellomyces capsulatus NAm1]
Length = 180
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL----EEAGEEA 67
+ G T V C++V + VIG G+ + G HAE A+ ++G
Sbjct: 3 EEA-LASGET----PVGCVLVHNDEVIGSGMNDTNKSMNGTRHAEFLAIEEVLRKSGMSI 57
Query: 68 RGATA 72
GA
Sbjct: 58 LGAQM 62
>gi|302871258|ref|YP_003839894.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
OB47]
gi|302574117|gb|ADL41908.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
OB47]
Length = 154
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
++D FM L V LIVKD ++ G
Sbjct: 4 TWDEYFMQIVDIVKERSTCLRRK---VGALIVKDKRILATGYNGAPMGLPHCEEVGCVRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G G+ Y T PC +
Sbjct: 61 KLNIPSGQRHELCRGLHAEQNAIIQAAKMGVVIDGSIIYTTTYPCVICAKM 111
>gi|312200616|ref|YP_004020677.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
gi|311231952|gb|ADP84807.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
Length = 198
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
+ +++ DG V+GRG HAE+ AL A GAT VTLEPC
Sbjct: 63 PIGAVVIGADGTVLGRGHNIREVAADPTGHAEIVALRAAATAVGEWRLTGATLVVTLEPC 122
Query: 80 SHY 82
+
Sbjct: 123 TMC 125
>gi|325662502|ref|ZP_08151105.1| hypothetical protein HMPREF0490_01845 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471198|gb|EGC74423.1| hypothetical protein HMPREF0490_01845 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 159
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR-GV---TAYGGCPHAEVQALE 61
++ A+ S+ G + N L+V KDG +I G T HAE
Sbjct: 5 HEYYLRRAIEISKEARG--AGNTPFGALLVNKDGEIIMEQGNIEITEKICTGHAEATLAA 62
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
A E T Y T EPC+
Sbjct: 63 RASHEYSKEYLWDCTLYTTAEPCAMC 88
>gi|317178213|dbj|BAJ56002.1| riboflavin biosynthesis protein [Helicobacter pylori F16]
Length = 344
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 111/336 (33%), Gaps = 71/336 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDSAFKDCVFLITLEPCNSYGKTPACSGLLEVLKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V+ ++ + + GL L + I V L +K K+A+
Sbjct: 128 VIATEENEAKKG--GLARLQKARIEGVVCESLENKAKDLLLPFRTMEQKGRFNLFKLALR 185
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 186 MNG-----DYYHGKITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNK 240
Query: 220 MR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
I + + +SK+ + D P
Sbjct: 241 NPNIAILSKHSIDPNSKVFSAPNRLVNVFYDPKDLP------------------------ 276
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|254818548|ref|ZP_05223549.1| hypothetical protein MintA_01421 [Mycobacterium intracellulare ATCC
13950]
Length = 251
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L EGG + S I+ ++D + L + ++G G L C D
Sbjct: 183 ILTEGGPMLLGSLIDRDMLDELCLTIAPYIVGGQARRIAAGPGQLLTGMRCAHV--LTDD 240
Query: 350 ---VCLEYIG 356
+ Y+
Sbjct: 241 AGYLYTRYVR 250
>gi|268323388|emb|CBH36976.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
[uncultured archaeon]
Length = 224
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP- 205
+R + + A+S D I I+G + +++V L+A SDAI+VGIGTVLAD+P
Sbjct: 1 MERPFVFINAAMSADGKISTVARVQTRISGRVDRDRVDALKAGSDAIMVGIGTVLADNPS 60
Query: 206 -------ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLA 257
R ++ +P+RI++D + +D++++ +I V++ +
Sbjct: 61 LTVKSRKRQEDRKQAERDENPIRIVVDSTARTPIDAEMLSKGSGKRIIAVSKRAIVADVD 120
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
K I + + DLKKLL +L RGV L+VEGGA + S ++ LVD I +Y
Sbjct: 121 RLGEKAEIIVCGREEVDLKKLLDLLWQRGVKRLMVEGGATLNWSLVSQGLVDEIYIYIGN 180
Query: 318 IVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYIGK 357
I+IG P+ ++ + + + + L++ +
Sbjct: 181 IIIGGEHAPTLVDGTGFVRDMAKLELLSAEKMDKGIILQWRVR 223
>gi|210135672|ref|YP_002302111.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
gi|210133640|gb|ACJ08631.1| riboflavin biosynthesis protein [Helicobacter pylori P12]
Length = 344
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 70/359 (19%), Positives = 123/359 (34%), Gaps = 73/359 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + + L NPSVAC ++ K+ ++ PHAEV A + A + R
Sbjct: 8 LEMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 HLKNDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAK--KGGLARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R H+
Sbjct: 185 RMNGDYHHG---KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYHNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + ++ +SK+ I D P
Sbjct: 242 PNIAILSKHSINPNSKVFSAPNRLVNIFNNPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+ +G +EGG + S + +D ++L+ +IGE + +P + L
Sbjct: 277 ---LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMIGEAFSTLALKTPFKGRLL 328
>gi|167911457|ref|ZP_02498548.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei 112]
Length = 185
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 54 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 113
Query: 81 HYGRSPP 87
+
Sbjct: 114 MCSGAIM 120
>gi|50311993|ref|XP_456028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036251|sp|Q6CJ61|RIB7_KLULA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|49645164|emb|CAG98736.1| KLLA0F21120p [Kluyveromyces lactis]
Length = 252
Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+++ ++ L A S D I I+ + H LR + D I++G GTVL DDP
Sbjct: 28 QEKPYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFDGIMLGCGTVLVDDPG 87
Query: 207 LTCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTAL-----LAPVIIVTENDD 253
L C+ EHSP IILDP+ K + +KT AP+++V + +
Sbjct: 88 LNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDSGDGKAPIVVVKKLPE 147
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSII 312
V + + G+ S++VEGG V + + L+D+++
Sbjct: 148 VVEENVDYLVMQTNFTGKVDWHDLFIQLKSQFGLKSIMVEGGGIVINDLLQRPHLIDALV 207
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ +G G+ +E N +
Sbjct: 208 ITVGATFLGSEGVEV---SPLIEINLKDISW 235
>gi|226363496|ref|YP_002781278.1| tRNA-specific adenosine deaminase [Rhodococcus opacus B4]
gi|226241985|dbj|BAH52333.1| putative tRNA-specific adenosine deaminase [Rhodococcus opacus
B4]
Length = 152
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 25 TSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAY 73
T + V ++ DG+ + R V + HAE+ AL A G GAT
Sbjct: 21 TDADVPVGAVVFDADGVEVSRAVNSREAMADPTAHAEIIALRAAARVYGDGWRLEGATLA 80
Query: 74 VTLEPCSHY 82
VTLEPC+
Sbjct: 81 VTLEPCTMC 89
>gi|254430861|ref|ZP_05044564.1| tRNA-specific adenosine deaminase [Cyanobium sp. PCC 7001]
gi|197625314|gb|EDY37873.1| tRNA-specific adenosine deaminase [Cyanobium sp. PCC 7001]
Length = 206
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64
R+M LR ++ VG P A ++ + G IG G HAE+ AL +A
Sbjct: 52 RWMERLLRCAQR-VGEDGEIPVAAAVLDQHGRCIGWGCNRRERQQDPLGHAELVALRQAS 110
Query: 65 E-----EARGATAYVTLEPCSHY 82
+ T VTLEPC
Sbjct: 111 QLLGDWRLNSCTLLVTLEPCPMC 133
>gi|195591779|ref|XP_002085616.1| GD14864 [Drosophila simulans]
gi|194197625|gb|EDX11201.1| GD14864 [Drosophila simulans]
Length = 187
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FM+ +L ++ V IV ++ G G P
Sbjct: 28 WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGY---NGFPRNCSDDVFPWS 81
Query: 54 --------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 82 KAPKRSKKDDLLEDKKMYVVHAEANAILNTKGMSLSGTRLYTTLFPCNEC 131
>gi|195495983|ref|XP_002095501.1| GE19654 [Drosophila yakuba]
gi|194181602|gb|EDW95213.1| GE19654 [Drosophila yakuba]
Length = 199
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 39/110 (35%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FM+ +L ++ V IV ++ G G P
Sbjct: 24 WDDYFMATSLLSAKRSK---DPVTQVGACIVDSQNRIVAIGY---NGFPRNCSDDVFPWS 77
Query: 54 --------------------HAEVQALEE-AGEEARGATAYVTLEPCSHY 82
HAE A+ G G Y TL PC+
Sbjct: 78 KAKKGAQDFDPLEDKKMYVVHAEANAILNTNGMSLTGTRLYTTLFPCNEC 127
>gi|323485387|ref|ZP_08090735.1| hypothetical protein HMPREF9474_02486 [Clostridium symbiosum
WAL-14163]
gi|323694149|ref|ZP_08108328.1| dCMP deaminase [Clostridium symbiosum WAL-14673]
gi|323401250|gb|EGA93600.1| hypothetical protein HMPREF9474_02486 [Clostridium symbiosum
WAL-14163]
gi|323501866|gb|EGB17749.1| dCMP deaminase [Clostridium symbiosum WAL-14673]
Length = 177
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT---------------- 47
++D FM A + + V IV D ++ G
Sbjct: 23 TWDEYFMGVAKLSAMRSK---DPSTQVGACIVSGDNKILSMGYNGFPKGCSDDEFPWGKE 79
Query: 48 ---------AYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
Y H+E+ A+ G G+ YVTL PC+
Sbjct: 80 LETEDPYNAKYFYTTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 124
>gi|227549141|ref|ZP_03979190.1| bifunctional deaminase-reductase domain protein [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078782|gb|EEI16745.1| bifunctional deaminase-reductase domain protein [Corynebacterium
lipophiloflavum DSM 44291]
Length = 220
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L RG + + EGG ++ + + + L+D + L V G PLE
Sbjct: 136 EIIAALHARGFSRISCEGGPSLYAAMLAADLIDVMHLTVDPSVSGGDAHHLPLENSDCGT 195
Query: 337 NFMCVRRDYFGSDVCL--EYIG 356
+ + D L Y
Sbjct: 196 RRFTLEATHVSPDSVLFCRYRR 217
>gi|303245769|ref|ZP_07332052.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
gi|302493032|gb|EFL52897.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio fructosovorans JJ]
Length = 154
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 33/107 (30%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP-------------- 53
FM A + L V + V+D ++ G + G
Sbjct: 10 YFMRIAYLVAERSTCLRRK---VGAVAVRDRRILATGYNGSPSGTAHCLDIGCLREQMGI 66
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + + G GA Y T +PC +
Sbjct: 67 PSGERHELCRGLHAEQNVIIQCALHGVPIAGADIYCTTQPCLICTKM 113
>gi|238059485|ref|ZP_04604194.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237881296|gb|EEP70124.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 296
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
++ L A+S D I A + ++ ++V +RA DAILVG TV ADDP L R
Sbjct: 31 YVLLSCAMSIDGYIDDATDQRLLLSNEADLDRVDAVRASCDAILVGAATVRADDPRLVIR 90
Query: 211 LNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ P ++ + L ++ ++ +
Sbjct: 91 SPERRRERAARGLPSSPTKVTVTGSGDLDPAARFFTVGDADRIVYCATSVLAETRHRLGA 150
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
D +++L L RGV L+VEGGAAV F+ + L D + L + +G
Sbjct: 151 LATVADGGDPVGPRRVLADLAARGVRRLMVEGGAAVHTLFLGAGLADELHLVVAPFFVG 209
>gi|332653265|ref|ZP_08419010.1| riboflavin biosynthesis protein RibD C- domain protein
[Ruminococcaceae bacterium D16]
gi|332518411|gb|EGJ48014.1| riboflavin biosynthesis protein RibD C- domain protein
[Ruminococcaceae bacterium D16]
Length = 176
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P + + ++ N IY R+L L L R ++
Sbjct: 53 WTTYHQLVTELSPDHWPYDGHPCYVVTHRQETNREGIYFWNRELTALADRLKTRHKGNIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA+VA + +D + L V+G+G P E E V + + V
Sbjct: 113 ICGGASVAGQLLKEDRIDKLWLSVIPTVLGKGLRLFP--ELSKELPLKLVSTEQWNGIVD 170
Query: 352 LEYIGK 357
L Y +
Sbjct: 171 LVYERR 176
>gi|49480227|ref|YP_034907.1| dihydrofolate reductase family protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49331783|gb|AAT62429.1| conserved hypothetical protein, possible dihydrofolate reductase
family protein [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 173
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTITPHILGA-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|298248300|ref|ZP_06972105.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297550959|gb|EFH84825.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 198
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 1/139 (0%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ P + DS + ++ V++ N D +
Sbjct: 56 HELFHGYWPKVAENPDSDEWTDEQREIIQESKSVNNIVVSDTLTGNWPNYRIIRRADAYQ 115
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L + +L+ G + + + LVD I L IV+G G+P + +
Sbjct: 116 QIAELKRQPGKDILITGSRTLWNDLLAHDLVDEIHLMIGNIVLG-EGVPVFVGKPDASLR 174
Query: 338 FMCVRRDYFGSDVCLEYIG 356
M VRR ++ + Y
Sbjct: 175 LMEVRRWEDSDNILVRYEV 193
>gi|325912230|ref|ZP_08174627.1| putative ComE operon protein 2 [Lactobacillus iners UPII 143-D]
gi|325912505|ref|ZP_08174895.1| putative ComE operon protein 2 [Lactobacillus iners UPII 60-B]
gi|325475889|gb|EGC79058.1| putative ComE operon protein 2 [Lactobacillus iners UPII 143-D]
gi|325478178|gb|EGC81300.1| putative ComE operon protein 2 [Lactobacillus iners UPII 60-B]
Length = 157
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL S+ T V ++VKD +I G + G PH
Sbjct: 10 QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMIDGH 66
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ AL + G G YVT PC +
Sbjct: 67 CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCYNC 103
>gi|238881956|gb|EEQ45594.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 270
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 30 SVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
V+C++V K +I G + G HAE AL+ GE + YVT+EP
Sbjct: 18 PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIALQRFGEQKSSIDYNDLILYVTVEP 77
Query: 79 CSHY 82
C
Sbjct: 78 CIMC 81
>gi|310794835|gb|EFQ30296.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 178
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT-AYGGCPHAEV 57
++ D ++ AL + TN V +V + ++ G T G HAE
Sbjct: 12 SITPGDHSAYLQYALSLAERSPPK-PTNYRVGAALVNPANNSIVSTGYTLELPGNTHAEQ 70
Query: 58 QALEEAGEEARGA------------TAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVC 103
+ E+ A Y T+EPCS G P + + + + V
Sbjct: 71 CCFIKLAEKYGVAEEELNSVVKTPLVLYTTMEPCSTRLSGNMPCAKRILQLRPLIKAVYV 130
Query: 104 VDDPDVRV--SGRGLQWLSQKG 123
+ G L + G
Sbjct: 131 GVQEPEKFVRDNTGRGALERAG 152
>gi|291445595|ref|ZP_06584985.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
gi|291348542|gb|EFE75446.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
Length = 205
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 10/167 (5%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
+ + + M ++ L + TA P +
Sbjct: 36 PDHDIDWHTVDEELHQHFNDYFRTMGGFVEGRVTYELMEEFWPTADQDPANEGPMAEFAG 95
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLV 308
+ K + LL + V L L GGA + SF + L+
Sbjct: 96 IWRDMPKYVFSRTLESVGPNATLLHEVDPEQVRGLRDAAPGDLAVGGADLLESFRRADLI 155
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
D +Y +++G G P + + + FG+ V L Y
Sbjct: 156 DEYRVYVHPLILG-RGRP-FFRDAEERQRLRLLETRTFGNGVVMLRY 200
>gi|239942148|ref|ZP_04694085.1| hypothetical protein SrosN15_14197 [Streptomyces roseosporus NRRL
15998]
gi|239988611|ref|ZP_04709275.1| hypothetical protein SrosN1_14979 [Streptomyces roseosporus NRRL
11379]
Length = 188
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 10/167 (5%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
+ + + M ++ L + TA P +
Sbjct: 19 PDHDIDWHTVDEELHQHFNDYFRTMGGFVEGRVTYELMEEFWPTADQDPANEGPMAEFAG 78
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLV 308
+ K + LL + V L L GGA + SF + L+
Sbjct: 79 IWRDMPKYVFSRTLESVGPNATLLHEVDPEQVRGLRDAAPGDLAVGGADLLESFRRADLI 138
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
D +Y +++G G P + + + FG+ V L Y
Sbjct: 139 DEYRVYVHPLILG-RGRP-FFRDAEERQRLRLLETRTFGNGVVMLRY 183
>gi|260904511|ref|ZP_05912833.1| bifunctional deaminase-reductase domain protein [Brevibacterium
linens BL2]
Length = 187
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V+GGA V F+ ++LVD + L + ++IG+G PS + + VR
Sbjct: 109 GCKRVYVDGGATVRW-FLAAKLVDELTLSQVPVLIGDG--PSLFGSLGGDVDLEHVRTTV 165
Query: 346 F-GSDVCLEYIGKN 358
G V Y +
Sbjct: 166 LDGGMVQTTYRVVD 179
>gi|212697211|ref|ZP_03305339.1| hypothetical protein ANHYDRO_01779 [Anaerococcus hydrogenalis DSM
7454]
gi|212675660|gb|EEB35267.1| hypothetical protein ANHYDRO_01779 [Anaerococcus hydrogenalis DSM
7454]
Length = 146
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-AYGGCPH-------- 54
+++ F+ A + T V C++V + +I G + G PH
Sbjct: 7 TWNEYFIKLAHMVALRG---TCDRAYVGCVLVNNENRIISTGYNGSIKGNPHCDEVGHTM 63
Query: 55 ----------AEVQAL---EEAGEEARGATAYVTLEPCSHY 82
AE+ AL + G + + YVT PC +
Sbjct: 64 RDGHCIATIHAEMNALLYCAKEGISVKNSICYVTHFPCLNC 104
>gi|315654318|ref|ZP_07907226.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
gi|315491353|gb|EFU80970.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333]
Length = 180
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 13 AALR----FSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHAEVQALEE 62
AL ++ G P V ++ +GIV G G+ HAE+ AL E
Sbjct: 35 RALETAYGLAQKA-GRAGDIP-VGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALRE 92
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A +G T TLEPC+
Sbjct: 93 AAGRLERWNLKGCTLVATLEPCTMC 117
>gi|307328982|ref|ZP_07608150.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306885344|gb|EFN16362.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 284
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLE 335
++T L G T LL EGG + F + ++D + L + +V G+ E
Sbjct: 201 AVVTALAELGHTRLLTEGGPTLLAQFAAAGVLDELCLAVAPLVTAGDAKRIMDGAELGEP 260
Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
+ F + Y
Sbjct: 261 EQFTLDSVLEEAGFLFTRYRR 281
>gi|255101026|ref|ZP_05330003.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-63q42]
Length = 145
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
FM + T V +IV + ++ G G
Sbjct: 13 EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69
Query: 52 ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE AL + G + + YVT PC +
Sbjct: 70 HCIRTIHAEQNALYYCAKEGISVKNCSIYVTHFPCLNC 107
>gi|197335735|ref|YP_002156494.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
fischeri MJ11]
gi|197317225|gb|ACH66672.1| riboflavin biosynthesis protein RibD C- domain protein [Vibrio
fischeri MJ11]
Length = 177
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 57/149 (38%), Gaps = 8/149 (5%)
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+P+ +++ + + S ++ PV +++
Sbjct: 24 WLHAIPNPDQNSMGFIEHFDRIDAMVMGRNTLDMVLSFDVEWPYSKPVFVLSNT-----M 78
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + + ++ +LK++L + +G +L ++GG + +F+ L+D +I+
Sbjct: 79 TSVPEGYEDKVFLVKGELKEVLNEIHAKGFKNLYIDGGVTI-QNFLKEDLIDELIITTIP 137
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+++G G NF V+ + F
Sbjct: 138 VLLGGG--SPLFAGLEQPLNFKFVKSETF 164
>gi|259500880|ref|ZP_05743782.1| competence protein ComEB [Lactobacillus iners DSM 13335]
gi|302190667|ref|ZP_07266921.1| ComE operon protein 2 [Lactobacillus iners AB-1]
gi|309803656|ref|ZP_07697746.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 11V1-d]
gi|309805762|ref|ZP_07699799.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 09V1-c]
gi|309805965|ref|ZP_07699992.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 03V1-b]
gi|309809164|ref|ZP_07703037.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 2503V10-D]
gi|312871238|ref|ZP_07731336.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 3008A-a]
gi|312872692|ref|ZP_07732757.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2062A-h1]
gi|312874090|ref|ZP_07734125.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2052A-d]
gi|312874953|ref|ZP_07734972.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2053A-b]
gi|315654038|ref|ZP_07906954.1| competence protein comEB [Lactobacillus iners ATCC 55195]
gi|329920925|ref|ZP_08277474.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 1401G]
gi|259167574|gb|EEW52069.1| competence protein ComEB [Lactobacillus iners DSM 13335]
gi|308164254|gb|EFO66511.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 11V1-d]
gi|308164882|gb|EFO67128.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 09V1-c]
gi|308167647|gb|EFO69799.1| putative ComE operon protein 2 [Lactobacillus iners LactinV 03V1-b]
gi|308170609|gb|EFO72629.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 2503V10-D]
gi|311089698|gb|EFQ48123.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2053A-b]
gi|311090430|gb|EFQ48839.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2052A-d]
gi|311091734|gb|EFQ50113.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 2062A-h1]
gi|311093252|gb|EFQ51598.1| putative ComE operon protein 2 [Lactobacillus iners LEAF 3008A-a]
gi|315488734|gb|EFU78380.1| competence protein comEB [Lactobacillus iners ATCC 55195]
gi|328935490|gb|EGG31961.1| putative ComE operon protein 2 [Lactobacillus iners SPIN 1401G]
Length = 157
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL S+ T V ++VKD +I G + G PH
Sbjct: 10 QYFMMQALVISQRS---TCDRALVGSVLVKDKRMIATGYNGSVTGEPHCDDEGHLMVDGH 66
Query: 56 -------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ AL + G G YVT PC +
Sbjct: 67 CVRTIHSEMNALIQCAKNGISTEGCAIYVTHFPCFNC 103
>gi|170751807|ref|YP_001758067.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
gi|170658329|gb|ACB27384.1| CMP/dCMP deaminase zinc-binding [Methylobacterium radiotolerans
JCM 2831]
Length = 152
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
S + A+ + P +IV+DG V+ R HAE+ AL
Sbjct: 2 STHEDHIREAVALAA-ANVEAGGAPY-GAVIVRDGAVLVRAANTVHATNDPSAHAEMVAL 59
Query: 61 EEAG-----EEARGATAYVTLEPCSHYG 83
EA + Y + PC
Sbjct: 60 REASRLLGRRDLGDCVMYASGRPCPMCH 87
>gi|91779380|ref|YP_554588.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
gi|91692040|gb|ABE35238.1| putative pyrimidine reductase [Burkholderia xenovorans LB400]
Length = 225
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 15/224 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ +I + S D G + V + +
Sbjct: 1 MKPYIVAHMMSSLDGRSLTDGWHLDYASDLYETTAATFEADGWICGRVTMQEISHGKDYP 60
Query: 208 ---------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
+ I +DP +++ S + + V+ DD + L
Sbjct: 61 AGLASGAVPRTDHFVERNADQYAISIDPQGRVAWKSNTALKSHVIEVLTEQVADDYLAYL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ DL K++ + GV L+VEGG+ V+ +F+N+ LVD + +
Sbjct: 121 QSIGVSYVFGGKTGIDLDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILP 180
Query: 318 IVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+V G PS E+ + D V L Y
Sbjct: 181 LVDGRSEHPSSFEVAMEKWQAPAYLKLTSVEKTDHDAVWLRYTK 224
>gi|59712282|ref|YP_205058.1| pyrimidine reductase [Vibrio fischeri ES114]
gi|59480383|gb|AAW86170.1| pyrimidine reductase [Vibrio fischeri ES114]
Length = 177
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++L + +G +L ++GG + +F+ L+D +I+ +++G G
Sbjct: 98 EVLNEIHAKGFKNLYIDGGVTI-QNFLKEDLIDELIITTIPVLLGGG--SPLFAGLEQPL 154
Query: 337 NFMCVRRDYF 346
NF V+ + F
Sbjct: 155 NFKFVKSETF 164
>gi|302772701|ref|XP_002969768.1| hypothetical protein SELMODRAFT_6274 [Selaginella moellendorffii]
gi|300162279|gb|EFJ28892.1| hypothetical protein SELMODRAFT_6274 [Selaginella moellendorffii]
Length = 147
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVT---------------- 47
S+D FMS A ++ V +V +++G G
Sbjct: 3 SWDDYFMSIAFLSAQRSK---DPIRQVGACLVSQDYVILGIGYNGFPRGCSDDKLPWAKK 59
Query: 48 AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
+ G HAEV A+ A G YVT+ PC+
Sbjct: 60 SRDGDLLKTKYPYVCHAEVNAILNRNHASASGQRLYVTMFPCNEC 104
>gi|296157007|ref|ZP_06839844.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
Ch1-1]
gi|295892893|gb|EFG72674.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
Ch1-1]
Length = 225
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 15/224 (6%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+ +I + S D G + V + +
Sbjct: 1 MKPYIVAHMMSSLDGRSLTDGWHLDYASDLYENTAATFEADGWICGRVTMQEISHGKDYP 60
Query: 208 ---------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
+ I +DP +++ S + + V+ DD + L
Sbjct: 61 AGLARGAVPRTDHFVERNAEQYAISIDPQGRVAWKSNTALKSHVIEVLTEQVADDYLAYL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ DL K++ + GV L+VEGG+ V+ +F+N+ LVD + +
Sbjct: 121 QSIGVSYVFGGKTGIDLDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILP 180
Query: 318 IVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+V G PS E+ + D V L Y
Sbjct: 181 LVDGRSAHPSSFEVAMEKWQAPAYLKLTSVEKTEHDAVWLRYTK 224
>gi|218888180|ref|YP_002437501.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759134|gb|ACL10033.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 182
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 26/108 (24%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM + V + VKD ++ G
Sbjct: 11 QYFMEITYLVAERSTCTRRK---VGAIAVKDKRILATGYNGAPSGVAHCLDVGCLRTQLG 67
Query: 47 ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G G+ Y T +PC +
Sbjct: 68 VPSGQRHEICRGLHAEQNVIVQAAIHGISLAGSEIYCTTQPCLICTKM 115
>gi|50287537|ref|XP_446198.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036256|sp|Q6FU96|RIB7_CANGA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|49525505|emb|CAG59122.1| unnamed protein product [Candida glabrata]
Length = 244
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 14/195 (7%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R +TL A S D I I+ +K H LR D IL+G GTVLADD
Sbjct: 20 HRNGRPFVTLTYAQSIDAKIAKQRGVRTTISHIETKEMTHYLRYFHDGILIGSGTVLADD 79
Query: 205 PELTCRLN--------GLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTEN 251
P L C+ ++E SP IILDP K + P++I T+
Sbjct: 80 PGLNCKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGKPPIVITTKT 139
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDS 310
A L T+ + S+++EGG+ V + + S L+DS
Sbjct: 140 PKVKEANVEYMIMEPDANDRISWKSILDTLRRNYDMKSVMIEGGSHVINQLLMCSDLIDS 199
Query: 311 IILYRSQIVIGEGGI 325
+I+ I +G G+
Sbjct: 200 LIVTIGSIYLGSEGV 214
>gi|256825377|ref|YP_003149337.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
sedentarius DSM 20547]
gi|256688770|gb|ACV06572.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
sedentarius DSM 20547]
Length = 229
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+L + G +L EGG ++ + LVD + IG G P
Sbjct: 148 VLQDVRDAGHRVVLCEGGPSIWQQLLTEELVDEWCQTLAPTHIGGGEGSLP-GALSTPLR 206
Query: 338 FMCVRRDYFGSDVCLEYIG 356
+ S V +
Sbjct: 207 WELAGMLEEDSVVLSRWRR 225
>gi|154150170|ref|YP_001403788.1| CMP/dCMP deaminase, zinc-binding [Candidatus Methanoregula boonei
6A8]
gi|153998722|gb|ABS55145.1| CMP/dCMP deaminase, zinc-binding [Methanoregula boonei 6A8]
Length = 162
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 32/102 (31%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-------------- 47
++ F+ A R + T + +IV + ++ G T
Sbjct: 2 RTNRHQYFLDLAQRCANQG---TCLRRNFGAIIVDEYNTIVSTGYTGAPRKQMDCTELNR 58
Query: 48 --------------AYGGCPHAEVQALEEAGEEARGATAYVT 75
HAE+ A+ +AG+ ARG T Y+
Sbjct: 59 CWRKDHNIPSGSNYERCRSVHAEMNAMLQAGKLARGCTLYLA 100
>gi|308185276|ref|YP_003929409.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
gi|308061196|gb|ADO03092.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180]
Length = 344
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 64/337 (18%), Positives = 112/337 (33%), Gaps = 67/337 (19%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ L + + L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 5 ENLLEICLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKI 64
Query: 67 AR-----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGI 97
R +TLEPC+ YG++P C++ +
Sbjct: 65 LRPSLKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKP 124
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+RVV+ ++ + + GL L + I E K R +E++ L
Sbjct: 125 KRVVIATEENEAKKG--GLARLQKARIETIICRNLENKAKDLLLPFRVMEQKGRFNLFK- 181
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
++ ITG S H RA D +++ T+ D+P L R H
Sbjct: 182 LALRMNGDYHHG---KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYH 238
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ I + S + A V + D
Sbjct: 239 NKNPNIAILSKRSISPSSKVFFAPNRLVNTFHDPKDLP---------------------- 276
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 -----LEKGFN--FIEGGWGLFESLRDK--IDALLLH 304
>gi|331092051|ref|ZP_08340882.1| hypothetical protein HMPREF9477_01525 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402252|gb|EGG81823.1| hypothetical protein HMPREF9477_01525 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 162
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----------------- 46
S+D FM A+ + V C IV +D ++ G
Sbjct: 10 SWDEYFMGVAMLSGMRSK---DPSTQVGCCIVSQDNKILSMGYNGLPKGCSDDEFPWTRE 66
Query: 47 ------TAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHY 82
T Y H+E+ A+ +G GA YV+L PC+
Sbjct: 67 GEDPLETKYVYTVHSELNAILNYSGGSLAGAKLYVSLFPCNEC 109
>gi|311992960|ref|YP_004009827.1| Cd dCMP deaminase [Acinetobacter phage Acj61]
gi|295815249|gb|ADG36175.1| Cd dCMP deaminase [Acinetobacter phage Acj61]
Length = 184
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 49/177 (27%), Gaps = 64/177 (36%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------------- 47
M SS FM A S+ ++ V +I K+G +I G
Sbjct: 1 MKPSS----FMQIAYLVSQESKCVSWK---VGAVIAKNGRIISTGYNGTREGGVNCCDHA 53
Query: 48 --------AYGGCP-------------------------HAEVQALEEAGEE---ARGAT 71
Y P HAE+ A+ A + GAT
Sbjct: 54 HEQGWTEQRYNPVPPHVNQVVLKNEFREVHSAWSSAHEIHAELNAILFAAKNGLPIDGAT 113
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
YVTL PC +S + + R Q L G+ V +
Sbjct: 114 MYVTLSPCRECAKSIL--------QTGIKKLVYSELYDRNQPGWDQELIDAGVEVHQ 162
>gi|302823271|ref|XP_002993289.1| hypothetical protein SELMODRAFT_136875 [Selaginella moellendorffii]
gi|300138862|gb|EFJ05614.1| hypothetical protein SELMODRAFT_136875 [Selaginella moellendorffii]
Length = 192
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 46/167 (27%), Gaps = 34/167 (20%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVT---------------- 47
S+D FMS A ++ V +V +++G G
Sbjct: 3 SWDDYFMSIAFLSAQRSK---DPIRQVGACLVSQDYVILGIGYNGFPRGCSDDKLPWAKK 59
Query: 48 AYGGCP---------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ G HAEV A+ A G YVT+ PC+ + A
Sbjct: 60 SRDGDLLKTKYPYVCHAEVNAILNRNHASASGQRLYVTMFPCNECAKVIIQAGIAE---- 115
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
+ LS + V ++++ G
Sbjct: 116 VIFYTDKQSHPNFQFTASRKLLSMANVKVRKILQVSGNWRKSQKNCC 162
>gi|288958823|ref|YP_003449164.1| CMP/dCMP deaminase [Azospirillum sp. B510]
gi|288911131|dbj|BAI72620.1| CMP/dCMP deaminase [Azospirillum sp. B510]
Length = 150
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 36/107 (33%), Gaps = 17/107 (15%)
Query: 30 SVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
V +IV G V+ HAE+ A+ A G YVTLEP
Sbjct: 24 PVGAVIVDAATGTVLASAGNRTEELCDPSAHAELLAIRAACAERRQPRLPGCDLYVTLEP 83
Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
C CA I IRRV DP G ++ +Q
Sbjct: 84 C------ALCAAAISFARIRRVYYGAYDPKGGAVDHGPRFFTQATCH 124
>gi|91088935|ref|XP_973512.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase)
[Tribolium castaneum]
gi|270011567|gb|EFA08015.1| hypothetical protein TcasGA2_TC005604 [Tribolium castaneum]
Length = 178
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 38/152 (25%), Gaps = 38/152 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
FMS L ++ V +V + G +IG G G P
Sbjct: 15 DAHEHFMSFCLLAAQRSK---DPCTQVGACVVDRQGNLIGSGY---NGMPRGCHDDEFPW 68
Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
HAE+ A+ YVTL PC + I
Sbjct: 69 GKRSEDPLENKHLYVCHAELNAIANTTGTMNDCVIYVTLFPC-----NECAKLIIQNGIS 123
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
V + + + G+ +
Sbjct: 124 EVVYLSDKHAHKKSTVAAKAMFDSAGVKYWQF 155
>gi|296392969|ref|YP_003657853.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM
44985]
gi|296180116|gb|ADG97022.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM
44985]
Length = 180
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
V ++ DG + R A HAE+ AL +A G G T VTLEP
Sbjct: 39 PVGAVVFGPDGKELARAANAREAFGDPTAHAEILALRQAAAILGDGWRLIGCTLAVTLEP 98
Query: 79 CSHY 82
C+
Sbjct: 99 CTMC 102
>gi|255724014|ref|XP_002546936.1| hypothetical protein CTRG_01242 [Candida tropicalis MYA-3404]
gi|240134827|gb|EER34381.1| hypothetical protein CTRG_01242 [Candida tropicalis MYA-3404]
Length = 279
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQ 58
S ++M+ +L + T V+C++V K +I G + G HAE
Sbjct: 6 SRHFKYMAISLFVGYKALLNNET--PVSCIVVNSKTDEIISIGYNYTNHSLNGTQHAEFI 63
Query: 59 ALE----EAGEEARGATAYVTLEPCSHY 82
AL+ + YVT+EPC
Sbjct: 64 ALQRFESDESINYSDLILYVTVEPCIMC 91
>gi|209547815|ref|YP_002279732.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209533571|gb|ACI53506.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 187
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 1/123 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S + + + D LT L ++ +
Sbjct: 63 SYWPTAESEDTIKAYMNGIAKIAVSRTMTEPGWNNARVVSDPIPELTRLKQEDGKTIFIF 122
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A +A S + + L+D + + +++G G G + + G V L
Sbjct: 123 GSAELADSLLKAGLIDEVRVCVVPVILGGGNPLFKPAAGQVPLKLIESSTTQ-GGAVILR 181
Query: 354 YIG 356
Y
Sbjct: 182 YEP 184
>gi|72161720|ref|YP_289377.1| hypothetical protein Tfu_1316 [Thermobifida fusca YX]
gi|71915452|gb|AAZ55354.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida
fusca YX]
Length = 257
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+G+ +L EGG + H +++ LVD + L + ++ + L LE+ F
Sbjct: 183 AQQGLRRVLCEGGPHLMHDLVDADLVDELCLTLAPRIVAGDRLRL-LAGKPLERTF 237
>gi|148545120|ref|YP_001272490.1| hypothetical protein Lreu_1919 [Lactobacillus reuteri DSM 20016]
gi|184154452|ref|YP_001842793.1| hypothetical protein LAR_1797 [Lactobacillus reuteri JCM 1112]
gi|227364280|ref|ZP_03848373.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
gi|325683479|ref|ZP_08162995.1| hypothetical protein HMPREF0536_11917 [Lactobacillus reuteri
MM4-1A]
gi|148532154|gb|ABQ84153.1| hypothetical protein Lreu_1919 [Lactobacillus reuteri DSM 20016]
gi|183225796|dbj|BAG26313.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227070593|gb|EEI08923.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
gi|324977829|gb|EGC14780.1| hypothetical protein HMPREF0536_11917 [Lactobacillus reuteri
MM4-1A]
Length = 84
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMC 340
+ L + GG + F+ + LVD I + G G PS +
Sbjct: 7 EFNINRLAIVGGGKINGGFLEAGLVDEISILIGAGADGRTGQPSLFDGRPESSRPIALQL 66
Query: 341 VRRDYFGSD-VCLEYIGK 357
F V L Y+ K
Sbjct: 67 KDVASFDDGAVWLRYLVK 84
>gi|302669645|ref|YP_003829605.1| deoxycytidylate deaminase [Butyrivibrio proteoclasticus B316]
gi|302394118|gb|ADL33023.1| deoxycytidylate deaminase [Butyrivibrio proteoclasticus B316]
Length = 170
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-------------AYG 50
S+D FM A + N V IV D ++ G
Sbjct: 18 SWDEYFMGVAKLAAMRSK---DPNTQVGSCIVSEDNNILSMGYNGFPKGCSDEEFPWERD 74
Query: 51 GC----------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
G H+E+ A+ G GA YV+L PC+
Sbjct: 75 GEDELGTKYPFVTHSELNAILNYRGGSLVGAKIYVSLFPCNEC 117
>gi|271970484|ref|YP_003344680.1| CMP/dCMP deaminase zinc-binding protein [Streptosporangium roseum
DSM 43021]
gi|270513659|gb|ACZ91937.1| CMP/dCMP deaminase zinc-binding protein [Streptosporangium roseum
DSM 43021]
Length = 154
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG V+ R HAEV AL EA G T VTLEPC
Sbjct: 25 PVGAVVLGPDGSVLARAGNDRESLNDPTAHAEVLALREAARARGEWRLTGCTLVVTLEPC 84
Query: 80 SHY 82
+
Sbjct: 85 TMC 87
>gi|126699509|ref|YP_001088406.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile 630]
gi|254975491|ref|ZP_05271963.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-66c26]
gi|255092879|ref|ZP_05322357.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile CIP 107932]
gi|255306890|ref|ZP_05351061.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile ATCC 43255]
gi|255314620|ref|ZP_05356203.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-76w55]
gi|255517294|ref|ZP_05384970.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-97b34]
gi|255650401|ref|ZP_05397303.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-37x79]
gi|306520380|ref|ZP_07406727.1| putative phage-related deoxycytidylate deaminase (putative late
competence protein) [Clostridium difficile QCD-32g58]
gi|115250946|emb|CAJ68774.1| putative dCMP deaminase [Clostridium difficile]
Length = 145
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---------------YGG 51
FM + T V +IV + ++ G G
Sbjct: 13 EYFMRLCETVAERG---TCDRAYVGAIIVNSENRIVSTGYNGSISGDKHCSEVGHEMRDG 69
Query: 52 ----CPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE AL + G + + YVT PC +
Sbjct: 70 HCIRTIHAEQNALYYCAKEGISVKDCSIYVTHFPCLNC 107
>gi|145594810|ref|YP_001159107.1| deaminase-reductase domain-containing protein [Salinispora tropica
CNB-440]
gi|145304147|gb|ABP54729.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 419
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ + L RG ++ EGG ++A ++ L+D I + + ++ G
Sbjct: 327 HQAIQTLRQRGHRRIVCEGGPSLAGQLAHADLLDEICMTIAPQLLAVAGPRITAGPAGQP 386
Query: 336 KNFMCVRRDYFGS---DVCLEYIGK 357
+ ++ L Y
Sbjct: 387 ADGRWQLHRSLLDEQGNLFLRYTRP 411
>gi|300780042|ref|ZP_07089898.1| cytidine and deoxycytidylate deaminase [Corynebacterium
genitalium ATCC 33030]
gi|300534152|gb|EFK55211.1| cytidine and deoxycytidylate deaminase [Corynebacterium
genitalium ATCC 33030]
Length = 151
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 11 MSAALRFSRWHVGLTST--NPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALEEA 63
M A+ +R T+ + V ++ DG I G T HAEV +A
Sbjct: 1 MRRAIEVAR-----TTPIGDIPVGAVLYGPDGEEIATGTNRRETDRDPVGHAEVVVTRKA 55
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ G VTLEPC+
Sbjct: 56 AQALGTWRLDGCELVVTLEPCTMC 79
>gi|330808801|ref|YP_004353263.1| hypothetical protein PSEBR_a2016 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376909|gb|AEA68259.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 243
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ L + G+ +LL+EGG + +F+ + L+D I L + G G+PS E
Sbjct: 148 QALAMLGARFGLKTLLLEGGGVINGTFLKAGLIDEISLLIYPGIDGLSGVPSIFEYHGQS 207
Query: 336 -------KNFMCVRRDYFGSD-VCLEYIGKNL 359
++ + + Y+ +
Sbjct: 208 DERPASGQSLRHISTQTIEDGFIWARYLVAKM 239
>gi|312898548|ref|ZP_07757938.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Megasphaera micronuciformis F0359]
gi|310620467|gb|EFQ04037.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Megasphaera micronuciformis F0359]
Length = 158
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60
+ D +M + +I+ I R T HAE+ A+
Sbjct: 2 TQDEFYMGK--AIEEAKKAAAIGEIPIGAVIIYKKKAIARAHNLRETLPSATAHAEILAI 59
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
EEA T YVT EPC
Sbjct: 60 EEACRVLSRWRLTDCTLYVTAEPCPMC 86
>gi|300172771|ref|YP_003771936.1| reductase [Leuconostoc gasicomitatum LMG 18811]
gi|299887149|emb|CBL91117.1| Reductase (Putative) [Leuconostoc gasicomitatum LMG 18811]
Length = 177
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ + + V GG ++ + + +VD + +++G+G E G
Sbjct: 95 DIIKDYQKQAGNDIWVVGGGSILKPLLEANMVDEFWIQIVPVLLGQG--KRLFEPGRYRY 152
Query: 337 NFMCVRRDYFGSDVCLEY 354
+ G +
Sbjct: 153 RLQVIETTQLGEMTEIHL 170
>gi|260777055|ref|ZP_05885949.1| dihydrofolate reductase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606721|gb|EEX32995.1| dihydrofolate reductase [Vibrio coralliilyticus ATCC BAA-450]
Length = 176
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+L L +G L ++GG V SF+ L+D ++L +++G G
Sbjct: 98 DVLNELNAQGYKDLYIDGGKTV-QSFLQQDLIDEMVLTTIPVLLGGGA--PLFGSLVKPL 154
Query: 337 NFMCVRRD-YFGSDVCLEYIG 356
NF + + + G+ V Y+
Sbjct: 155 NFKLHKSETHLGAIVQSHYLR 175
>gi|331703568|ref|YP_004400255.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328802123|emb|CBW54277.1| Deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 146
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 27/96 (28%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGC----------------- 52
M A + N V ++V + ++ G +
Sbjct: 1 MLIAKASAMRSK---DPNTQVGAIVVNELQQIVATGYNGFPRGVSDDEFPWSKNNEDWLE 57
Query: 53 ------PHAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + YVTL PC+
Sbjct: 58 NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNEC 93
>gi|298243178|ref|ZP_06966985.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297556232|gb|EFH90096.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 287
Score = 54.2 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKN----FMCVRR 343
L EGG + ++F++ +D + L + + G P+ + +
Sbjct: 211 LTEGGPQLLNAFLSEGQLDELFLTLAPQLAGHIHNDQRPAVVMGAHFAPERPLWSTLQSV 270
Query: 344 DYFGSDVCLEY 354
GS + L Y
Sbjct: 271 RLVGSHLFLRY 281
>gi|167894828|ref|ZP_02482230.1| putative deaminase [Burkholderia pseudomallei 7894]
Length = 150
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 21 HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGAT 71
G V +IV+ VI RG G HAE+ AL A G
Sbjct: 1 AAGEV----PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCE 56
Query: 72 AYVTLEPCSHYGRSPP 87
YVTLEPC +
Sbjct: 57 LYVTLEPCLMCSGAIM 72
>gi|319941045|ref|ZP_08015381.1| deoxycytidylate deaminase [Sutterella wadsworthensis 3_1_45B]
gi|319805402|gb|EFW02204.1| deoxycytidylate deaminase [Sutterella wadsworthensis 3_1_45B]
Length = 138
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 31/107 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + + +M A + V C+IVK+ +I G G P
Sbjct: 1 MDIVKDNLMYMRIAQIAAERSYAKRLK---VGCVIVKNHSIISFGW---NGMPTGYDNCC 54
Query: 54 ---------------HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE+ A+ + E ++ A ++T PC
Sbjct: 55 EMEVDGKLVTRPEVQHAELNAIAKLAENGYSSKDAAIFITHSPCIDC 101
>gi|195953373|ref|YP_002121663.1| CMP/dCMP deaminase zinc-binding [Hydrogenobaculum sp. Y04AAS1]
gi|195932985|gb|ACG57685.1| CMP/dCMP deaminase zinc-binding [Hydrogenobaculum sp. Y04AAS1]
Length = 147
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGR 84
V+ L+ K+ ++ HAE+ A+E+A + G YV+LEPC
Sbjct: 24 PVSALVTKNDEIVSWAFNGIKSIEHAEILAIEKAMNVLNTKRLDGCDIYVSLEPCPMCTY 83
>gi|229056422|ref|ZP_04195835.1| Enzyme [Bacillus cereus AH603]
gi|228720896|gb|EEL72445.1| Enzyme [Bacillus cereus AH603]
Length = 174
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P +E E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLRGFFKNNLIDEYVVTITPHILG-YGVPLF-KEKNPEI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
+ FG V L Y K+
Sbjct: 153 HLTLTDTKRFGQFVNLYYKVKS 174
>gi|302521124|ref|ZP_07273466.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SPB78]
gi|302430019|gb|EFL01835.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SPB78]
Length = 151
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
M + ++ A+ +R + + + DG ++GRG H
Sbjct: 1 MLTTEQAQEWLRPAIEEARQGLAEGGV--PIGAALYGADGTLLGRGHNRRVQDADPSSHG 58
Query: 56 EVQALEEAGEE--ARGATAYVTLEPCSHYG 83
E A +AG + RG T TL PC +
Sbjct: 59 ETDAFRKAGRQRTYRGTTMVTTLSPCWYCS 88
>gi|121715194|ref|XP_001275206.1| deoxycytidylate deaminase [Aspergillus clavatus NRRL 1]
gi|119403363|gb|EAW13780.1| deoxycytidylate deaminase [Aspergillus clavatus NRRL 1]
Length = 154
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 32/101 (31%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP-------- 53
M A ++ + V C++V++ VI G GGCP
Sbjct: 1 MQLAALAAQRSNCMKR---RVGCVLVRERRVISTGYNGTPRHLTNCNEGGCPRCNRGERG 57
Query: 54 ----------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E G+ Y PC
Sbjct: 58 GVGLSTCLCLHAEENALLEAGRERIREGSILYCDTCPCLTC 98
>gi|261838779|gb|ACX98545.1| riboflavin-specific deaminase [Helicobacter pylori 51]
Length = 344
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 111/335 (33%), Gaps = 69/335 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R +
Sbjct: 185 RMNGDYCHG---KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|171679239|ref|XP_001904566.1| hypothetical protein [Podospora anserina S mat+]
gi|170939245|emb|CAP64473.1| unnamed protein product [Podospora anserina S mat+]
Length = 230
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 34/155 (21%)
Query: 2 PVSSFDAR-FMSAALRFSRWHVGLTSTNPS---VACLIV--KDGIVIGRGVTAY------ 49
P++ D + +M AL ++ +PS V +V V+ G +
Sbjct: 55 PIAPHDHKTYMRYALEQAKLS----PPSPSKFCVGAALVDADANQVLSTGYSEELARDRP 110
Query: 50 --GGCPHAEVQALEE------------AGEEARGATAYVTLEPCSHY--GRSPPCAQFII 93
G HAE + A Y T+EPC+ G + +
Sbjct: 111 NDPGSTHAEHCCFIKVADENGIHDFDIAPVLPPNTVLYTTMEPCNERLSGNRTCVERILG 170
Query: 94 ECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIV 126
+VV +G++ L G+ V
Sbjct: 171 LGSAIKVVYVGIREPNTFIQDNQGIKRLEAAGVKV 205
>gi|148546319|ref|YP_001266421.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas putida F1]
gi|148510377|gb|ABQ77237.1| tRNA-adenosine deaminase [Pseudomonas putida F1]
gi|313497401|gb|ADR58767.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas putida
BIRD-1]
Length = 159
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
V ++V+ G VIG+G HAE+ A + G+T YVTLEPCS
Sbjct: 32 PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAARSASNYRLPGSTLYVTLEPCS 91
Query: 81 HY 82
Sbjct: 92 MC 93
>gi|269928636|ref|YP_003320957.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
DSM 20745]
gi|269787993|gb|ACZ40135.1| CMP/dCMP deaminase zinc-binding protein [Sphaerobacter thermophilus
DSM 20745]
Length = 191
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 32/111 (28%), Gaps = 41/111 (36%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+ D +M A+ L S V ++V VI G G P
Sbjct: 13 ARDEYYMRLAMAVRERASCLGS---RVGAVLVLQDRVIATGY---NGTPMGMKNCDEGGC 66
Query: 54 ---------------------HAEVQALEEA---GEEARGATAYVTLEPCS 80
HAE L A G RGA Y T++PC
Sbjct: 67 DRCAHPERYPAGQGYDACICVHAEQNLLLTAARFGIAVRGAVVYTTMQPCF 117
>gi|2493560|sp|P78594|FCA1_CANAL RecName: Full=Cytosine deaminase; AltName: Full=Cytosine
aminohydrolase
gi|1762320|gb|AAC15782.1| cytosine deaminase [Candida albicans]
Length = 150
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAY----GGCPHAEV 57
++ D + + AL ++ + C+I D V+G+G H E+
Sbjct: 1 MTFDDKKGLQVALDQAKKSYSEGGI--PIGSCIISSDDTVLGQGHNERIQKHSAILHGEM 58
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHY 82
ALE AG + T Y TL PCS
Sbjct: 59 SALENAGRLPGKTYKDCTIYTTLSPCSMC 87
>gi|261840180|gb|ACX99945.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 52]
Length = 344
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 63/335 (18%), Positives = 116/335 (34%), Gaps = 69/335 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + G ++ +V +E++ K L + + + R K+A+
Sbjct: 128 VIATEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGR-FNLFKLALRM 186
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 187 NG-----DYCHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKHPIDPNSKVFSAPNRLVNAFYDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|154500854|ref|ZP_02038892.1| hypothetical protein BACCAP_04539 [Bacteroides capillosus ATCC
29799]
gi|150270354|gb|EDM97680.1| hypothetical protein BACCAP_04539 [Bacteroides capillosus ATCC
29799]
Length = 180
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P E + +++N I+ +L L L G ++
Sbjct: 53 WTTYHQLVTELSPDSWPYEGRPCYVVTHRQEENQRDIFFWNGELTALADKLKGEHEGNVW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA+VA + +D + L V+G+G P E E VR +++ V
Sbjct: 113 ICGGASVAGQLLKEGRIDKLWLSIIPTVLGKGVRLFP--ELSQELPLKLVRTEHWNGIVD 170
Query: 352 LEYIGKN 358
L Y +
Sbjct: 171 LVYERRR 177
>gi|313203820|ref|YP_004042477.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
gi|312443136|gb|ADQ79492.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
Length = 177
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+L L+ L + +GGA + + + L+D I+ + I +G G
Sbjct: 90 FYTGNLSDLIQELKSTDGKDIYCDGGAEIVTELMKNDLIDEFIISVAPIFLGNGTR--LF 147
Query: 330 EEGYLEKNFMCVRRDYFGSDV-CLEYIGKN 358
++G E+ V + F + + L+Y K
Sbjct: 148 KDGRPEQELELVYSNTFDTGLAQLKYRRKR 177
>gi|302873074|ref|YP_003841707.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
gi|307688768|ref|ZP_07631214.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
cellulovorans 743B]
gi|302575931|gb|ADL49943.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B]
Length = 167
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60
+ D + M AL + + V +I K +IGR ++ HAE++ L
Sbjct: 2 NIDDK-MRIALEIGKKSLEQGEL--PVGAVIFKGDEIIGRAYSSGESKQQFLRHAEMKVL 58
Query: 61 EEAGE------EARGATAYVTLEPCSHY 82
E E + + +VTLEPC
Sbjct: 59 WEVDEQGYSVRDRKNMQLFVTLEPCMMC 86
>gi|28901155|ref|NP_800810.1| hypothetical protein VPA1300 [Vibrio parahaemolyticus RIMD 2210633]
gi|260362715|ref|ZP_05775584.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus K5030]
gi|260880002|ref|ZP_05892357.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus AN-5034]
gi|260894677|ref|ZP_05903173.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus Peru-466]
gi|28809668|dbj|BAC62643.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|308086425|gb|EFO36120.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus Peru-466]
gi|308091889|gb|EFO41584.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus AN-5034]
gi|308112444|gb|EFO49984.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Vibrio parahaemolyticus K5030]
Length = 177
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L ++GG + +F+ L+D +++ R I++G G + NF + D
Sbjct: 106 KGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGA--PLFGDLEQPLNFKATKSD 162
Query: 345 YFGSDVC-LEYIGKN 358
+ Y+ +
Sbjct: 163 VVLDTLVQTTYVRER 177
>gi|302384784|ref|YP_003820606.1| dCMP deaminase [Clostridium saccharolyticum WM1]
gi|302195412|gb|ADL02983.1| dCMP deaminase [Clostridium saccharolyticum WM1]
Length = 164
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
++D FM A S+ + V IV +D ++ G G P
Sbjct: 10 TWDEYFMGVAALSSKRSK---DPSTQVGACIVSQDNKILSMGY---NGFPMGCSDDEFPW 63
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 64 DRENEQEDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 111
>gi|254409948|ref|ZP_05023728.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
gi|196182984|gb|EDX77968.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Microcoleus chthonoplastes PCC 7420]
Length = 182
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IVK+ V+ G + G H
Sbjct: 10 TWDEYFLMLAKLAATRSTCLAFP---VGAVIVKNKQVLATGYNGSPAGSVH 57
>gi|307174184|gb|EFN64829.1| Deoxycytidylate deaminase [Camponotus floridanus]
Length = 168
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 35/101 (34%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------------- 53
M+ A ++ V IV + ++G G G P
Sbjct: 1 MAIAFLSAKRSK---DPCTQVGACIVNNDKRIVGIGY---NGMPMGCDDDKFPWGKGSHN 54
Query: 54 -----------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE+ A L + + + T YV L PC+
Sbjct: 55 RDLDTKYLYVCHAEINAVLNKNSSDVKDCTMYVGLFPCNEC 95
>gi|227822764|ref|YP_002826736.1| putative reductase protein [Sinorhizobium fredii NGR234]
gi|227341765|gb|ACP25983.1| putative reductase protein [Sinorhizobium fredii NGR234]
Length = 176
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ + +R + + + + P E D +
Sbjct: 15 YVDHMAFAPGPVLFRHFIDDVRSLTGSVYGRRMYEVMRYWDEDHPEWDEAERDYAAAWRS 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVG---RGVTSLL---VE-GGAAVAHSFINSRLVDSII 312
K ++ L V RG+ + L +E G +A S L+D
Sbjct: 75 QPKWVVSRSLKSVGPNATLFEDDVEAAIRGLKAQLGGEIEVSGPELAGSLTKLGLIDEYR 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
LY +V+G G P + V D G D + L Y+
Sbjct: 135 LYLHPVVLG-RGKPLFADPR---PPLRLVASDRIGEDVIRLTYVP 175
>gi|91085973|ref|XP_971753.1| PREDICTED: similar to tRNA-specific adenosine-34 deaminase
subunit Tad2p/ADAT2, putative [Tribolium castaneum]
Length = 160
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
M A + + + + V C+ V + I G HAE+ +E+ +
Sbjct: 1 MERAFQHAYEAL--AAQEVPVGCIFVHNNTEIAFGRNTVNQTKNATRHAEINCIEQVTDY 58
Query: 67 -----------ARGATAYVTLEPCSHY 82
+G T +VT+EPC
Sbjct: 59 CKTNNFNLIDFFKGVTVFVTVEPCIMC 85
>gi|56757936|gb|AAW27108.1| SJCHGC09107 protein [Schistosoma japonicum]
Length = 165
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAG-- 64
M A ++ + + P V C V G VI G HAE+ +
Sbjct: 1 MDVAFELAQEAL-KCNEVP-VGCAFVYKGEVIASGRNEVNATRDATQHAEMITIRHLEQW 58
Query: 65 ---------EEARGATAYVTLEPCSHY 82
+ YVT+EPC
Sbjct: 59 CRKNEIEFDKVLTECDLYVTVEPCIMC 85
>gi|290993580|ref|XP_002679411.1| purine deaminase [Naegleria gruberi]
gi|284093027|gb|EFC46667.1| purine deaminase [Naegleria gruberi]
Length = 203
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRG----VTAYGGCPHAEVQA 59
+ M A+ S+ N L++ + +I T HAE+
Sbjct: 41 LHEKLMKRAIDLSKES-CNDHGNHPFGALLIDNDTNEIILEAHNTVHTENDRTRHAELNL 99
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
A ++ T Y + EPC
Sbjct: 100 SSMASKKYPRDYLTNCTMYTSTEPCIMC 127
>gi|169349996|ref|ZP_02866934.1| hypothetical protein CLOSPI_00736 [Clostridium spiroforme DSM 1552]
gi|169293209|gb|EDS75342.1| hypothetical protein CLOSPI_00736 [Clostridium spiroforme DSM 1552]
Length = 176
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V ++ + + + N I ++ +L+ L + S+
Sbjct: 53 WNTYYQVKNELSPDNWVYDSLTSYIITHRKLDSTNNINFVQKNSSELVKDLKQKNGKSIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I L+D + ++G GI E E +
Sbjct: 113 ICGGAKIIQPLIQDNLIDEYYISVIPTILG-DGIKLF-EPVSNELKLKLKSTQSYNGITE 170
Query: 352 LEYIGK 357
L Y +
Sbjct: 171 LIYTRR 176
>gi|120402841|ref|YP_952670.1| deaminase-reductase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119955659|gb|ABM12664.1| bifunctional deaminase-reductase domain protein [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVR 342
+L GG + + + + LVD I + I IG P+ P++ +
Sbjct: 253 VLSTGGGQLNGALLRAGLVDEIEVEVVPIAIGGEATPTLFTAPDLPVDGVPTQLELTSAE 312
Query: 343 RDYFGSDVCLEY 354
G V L Y
Sbjct: 313 IRSQGR-VLLRY 323
>gi|300866842|ref|ZP_07111519.1| Bifunctional deaminase-reductase-like [Oscillatoria sp. PCC 6506]
gi|300335152|emb|CBN56679.1| Bifunctional deaminase-reductase-like [Oscillatoria sp. PCC 6506]
Length = 183
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ + L + + GG H F+ +D +IL +++G+ GIP + + LE
Sbjct: 91 EFIHKLRNMKGGDIWLVGGGQTIHYFLKYGFIDELILSIHPMILGK-GIPLIVNDPNLET 149
Query: 337 NFMCVRRDYFGSDVCLEYI 355
+ S + +
Sbjct: 150 ALNLKDVIQYNSGLLQVFY 168
>gi|297202099|ref|ZP_06919496.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|297148038|gb|EFH28836.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 193
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD- 349
L GGA + +F+ LVD + +Y +++G G P + V FG+
Sbjct: 121 LALGGAELGETFLRYGLVDELRIYVHPVLVGRGKPLFPHADTLTS--LRLVESHTFGNGV 178
Query: 350 VCLEYIGK 357
V L Y +
Sbjct: 179 VLLRYEPE 186
>gi|296166870|ref|ZP_06849287.1| tRNA-specific adenosine deaminase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897747|gb|EFG77336.1| tRNA-specific adenosine deaminase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 152
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ ++V DG + R V A HAE+ AL A G GAT VT+EP
Sbjct: 24 PIGAVVVGADGTELARAVNAREALGDPTAHAEILALRAAAGVLGDGWRLEGATLAVTVEP 83
Query: 79 CSHY 82
C+
Sbjct: 84 CTMC 87
>gi|26987771|ref|NP_743196.1| cumB protein [Pseudomonas putida KT2440]
gi|24982465|gb|AAN66660.1|AE016294_2 cumB protein [Pseudomonas putida KT2440]
Length = 145
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
V ++V+ G VIG+G HAE+ A + G+T YVTLEPCS
Sbjct: 18 PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAARSASNYRLPGSTLYVTLEPCS 77
Query: 81 HY 82
Sbjct: 78 MC 79
>gi|312196151|ref|YP_004016212.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311227487|gb|ADP80342.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 250
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCV 341
GRG++ +L EGG + + L+D + L + ++ G + L +
Sbjct: 172 AGRGLSRVLTEGGPMLHAQLAGAGLLDELCLTVAPLLAGPQHLGIVAGAAWPLAQPMELG 231
Query: 342 RRDYFGSDVCLEYIGKN 358
+ L Y N
Sbjct: 232 HVLEDDGSLFLRYRVPN 248
>gi|159037993|ref|YP_001537246.1| deaminase-reductase domain-containing protein [Salinispora
arenicola CNS-205]
gi|157916828|gb|ABV98255.1| bifunctional deaminase-reductase domain protein [Salinispora
arenicola CNS-205]
Length = 412
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
RG ++ EGG ++A + L+D I L + V+ G + +
Sbjct: 335 DRGHRRIVCEGGPSLAGQMAQADLLDEICLTIAPQVLAVAGPRITADSATQPASGEWQLS 394
Query: 344 DYFGS---DVCLEYIGKN 358
+V L Y +
Sbjct: 395 RSLLDEVGNVFLRYARPS 412
>gi|307150161|ref|YP_003885545.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 7822]
gi|306980389|gb|ADN12270.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7822]
Length = 173
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + V + + ++ N++ D + + L +L + GG + F+N+
Sbjct: 60 FPYPDKINYVFSRHHKNQDHNLVTFISTDPVEFVKQLKQASGKNLWLVGGGQMNTLFLNA 119
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
L+D II+ +++G GIP EK ++ F S + + Y K
Sbjct: 120 NLLDEIIISIHPVILG-EGIPLFAGNP-QEKKLQLIKHQSFESGLIQITYKIK 170
>gi|111023823|ref|YP_706795.1| hypothetical protein RHA1_ro06865 [Rhodococcus jostii RHA1]
gi|110823353|gb|ABG98637.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus
jostii RHA1]
Length = 262
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 3/129 (2%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALA--FRKKNINIIYCDCRDLKKLLTILVGRGVT 288
S++ +AP+++ + DP A I L+ L G+
Sbjct: 130 DPQSRLFTDTEVAPIVVTCTDADPGRVRALADAGARIVTAGDGQISGDGLIAALEHLGLR 189
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-DYFG 347
+L EGG ++ +VD + L + +++G G
Sbjct: 190 RVLCEGGPSLFGRLTADDVVDEVCLTTAPVLVGGTAGRVATAPGARIIAMTPAHILTDTD 249
Query: 348 SDVCLEYIG 356
V ++
Sbjct: 250 GTVLTRWVR 258
>gi|15612463|ref|NP_224116.1| putative riboflavin-specific deaminase [Helicobacter pylori J99]
gi|4156003|gb|AAD06964.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99]
Length = 344
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 63/319 (19%), Positives = 110/319 (34%), Gaps = 38/319 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + + L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 HLKSDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
++ ++ + + GL+ L + I E K R +E++ L ++
Sbjct: 128 IIATEENEAK--KGGLERLQKAHIETIICHNLENKAKNLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R H+
Sbjct: 185 RMNGDYHHG---KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYHNKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I S K ++ T +D L L I + L+ +
Sbjct: 242 PNIAI--LSKRSISPHSKVFFAPNRLVNTFHDPKDLPLEKGFNFIEGGWGLFEGLRDKID 299
Query: 281 ILVGRGVTSLLVEGGAAVA 299
L+ S++ E +A
Sbjct: 300 ALLLHSHASMIGEAFNTLA 318
>gi|46204383|ref|ZP_00209388.1| COG0590: Cytosine/adenosine deaminases [Magnetospirillum
magnetotacticum MS-1]
Length = 111
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALE 61
D + A+ + V ++V DG V G HAEV A+
Sbjct: 7 DTAHLYRAVALAVDSVAHAGG--PFGAVLVTADGQVF-EGNNRVTQDNDPTAHAEVTAIR 63
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A + GAT Y + EPC
Sbjct: 64 RACAALGTFDLTGATLYSSCEPCPMC 89
>gi|149744219|ref|XP_001497309.1| PREDICTED: similar to deaminase domain containing 1 [Equus
caballus]
Length = 186
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG-----------ATAYV 74
V CL+V + V+G+G HAE+ A+++A RG A YV
Sbjct: 38 PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALAWCRGRGRCPAEVFERAVLYV 97
Query: 75 TLEPCSHY 82
T+EPC
Sbjct: 98 TVEPCVMC 105
>gi|153006591|ref|YP_001380916.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152030164|gb|ABS27932.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 182
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG +A F+ L+D + L + + +G G +PL + + FG
Sbjct: 110 RNVWMIGGGELAAQFLAHGLLDELHLGVAPVFLGAG---APLLPASVRTPLVLAGVKQFG 166
Query: 348 S 348
Sbjct: 167 K 167
>gi|308064267|gb|ADO06154.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Sat464]
Length = 344
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 108/336 (32%), Gaps = 71/336 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------ 63
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V+ ++ + + GL L + I V L +K K+A+
Sbjct: 128 VIATEENEAKKG--GLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALR 185
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 186 MNG-----DYHHGKITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNK 240
Query: 220 MR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
I + + SK+ D P
Sbjct: 241 NPNIAILSKHSIDPHSKVFSAPNRLVNAFYDPKDLP------------------------ 276
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|86144699|ref|ZP_01063031.1| hypothetical protein MED222_09818 [Vibrio sp. MED222]
gi|85837598|gb|EAQ55710.1| hypothetical protein MED222_09818 [Vibrio sp. MED222]
Length = 177
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G+ +L ++GG + +F+ L+D +I+ IV+G G +
Sbjct: 98 QIVADLNNKGLNNLYIDGGITI-QNFLKEDLIDELIISTIPIVLGGG--SPLFGDLVSPV 154
Query: 337 NFMCVRRDYFGSDVC-LEYIGKN 358
+F + ++ Y+ K
Sbjct: 155 DFTLKGVTTYLDEIVQTHYLRKR 177
>gi|326326019|ref|YP_004250828.1| putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
gi|323669070|emb|CBJ93112.1| Putative deoxycytidylate deaminase [Vibrio nigripulchritudo]
Length = 148
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-------- 53
+S +D RF A S W N V ++ K G I G G P
Sbjct: 1 MSKWDIRFCKLAKHVSEWSK---DPNAKVGAVLFSKKGGDITIGY---NGFPFGVEDSVK 54
Query: 54 -------------HAEVQALEEAGEEARGATAYVTLEPCS 80
HAEV AL AG ARGAT +V +P
Sbjct: 55 RLQDKETKLDLVVHAEVNALIAAGSRARGATLFVWGKPIC 94
>gi|256396528|ref|YP_003118092.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256362754|gb|ACU76251.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 178
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L +++ + + + V + K + N D + L +G L+
Sbjct: 54 LFAQMWGDPQGPYLQRMYDMPKYVYSSTLTKADWNNTTIVSGDPVAAVRELKTQGDGDLM 113
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV- 350
V G + S + + LVD + + + +V+G G +PL N G+ V
Sbjct: 114 VYGYGRLGQSLLENGLVDELHVVVNPVVLGTG---TPLFRQGKRVNLRLESVSQRGNGVA 170
Query: 351 CLEYIG 356
L Y+
Sbjct: 171 TLVYVP 176
>gi|196047133|ref|ZP_03114350.1| dihydrofolate reductase family protein [Bacillus cereus 03BB108]
gi|229182983|ref|ZP_04310215.1| Enzyme [Bacillus cereus BGSC 6E1]
gi|196022003|gb|EDX60693.1| dihydrofolate reductase family protein [Bacillus cereus 03BB108]
gi|228600440|gb|EEK58028.1| Enzyme [Bacillus cereus BGSC 6E1]
Length = 173
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ F + L+D ++ + ++G G+P ++ E + FG
Sbjct: 108 IWMVGGGSLLREFFKNNLIDEYVVTMTPHILGS-GVPLFQDKNP-EIHLTLTDTKRFGQF 165
Query: 350 VCLEYIGK 357
V L Y K
Sbjct: 166 VNLYYKVK 173
>gi|325300417|ref|YP_004260334.1| bifunctional deaminase-reductase domain-containing protein
[Bacteroides salanitronis DSM 18170]
gi|324319970|gb|ADY37861.1| bifunctional deaminase-reductase domain protein [Bacteroides
salanitronis DSM 18170]
Length = 277
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 64/258 (24%), Gaps = 8/258 (3%)
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ--VEKRSHITLKIAVSQDN 162
++++ + + IV + + + + I +I
Sbjct: 17 IYATLQLNLSAMHFEPYNNRIVILSHYLCSRNKKYNIMKPYIICHMMASIDGRIDCDMTE 76
Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222
IG + Q L T P + E + I
Sbjct: 77 RIGGNEYYEALEQLACDSTLSGRVTMQMHYALPEPFTTDNPAPANAPSVYKATEANGYTI 136
Query: 223 ILDPHFKLSLDSKIIKTALL-APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+D L K L I I + + +
Sbjct: 137 AIDSRGTLRWPGKEADGLPLLVITSEKVSQAYLDTLRQQGISWIAIGKEGIDLSQAVQIL 196
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----N 337
V L + GG + +F+ + L+D + + + G G+ + + +
Sbjct: 197 NEQFNVKRLAIVGGGHINGAFLRAGLLDEVSIVIGAGIDGRAGMTAVFDGIGDKDYPTTL 256
Query: 338 FMCVRRDYFGSD-VCLEY 354
+ G + V L Y
Sbjct: 257 LKLKSMERVGENSVWLRY 274
>gi|296164645|ref|ZP_06847211.1| riboflavin biosynthesis protein RibD [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295899953|gb|EFG79393.1| riboflavin biosynthesis protein RibD [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 227
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 12/142 (8%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ +L S+++ P+++ ++ + + D D+ + +
Sbjct: 92 IAVISRSGRLP--SRLLSEPGRPPIVVTCAGAAAARDQPGDRRQVLVAGEDSVDVSRAVA 149
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-- 338
+L RG+ +L EGG V + + VD I + + + P+ +
Sbjct: 150 LLRARGMHRILCEGGPTVLDELVEADAVDEICVTLAPNL----AASQPVGHRLTPSSLPA 205
Query: 339 ----MCVRRDYFGSDVCLEYIG 356
V L+Y
Sbjct: 206 PVTMRLEHALVCDDYVFLKYRR 227
>gi|15639266|ref|NP_218715.1| deoxycytidylate deaminase, putative [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025508|ref|YP_001933280.1| deoxycytidylate deaminase [Treponema pallidum subsp. pallidum SS14]
gi|3322548|gb|AAC65262.1| deoxycytidylate deaminase, putative [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018083|gb|ACD70701.1| possible deoxycytidylate deaminase [Treponema pallidum subsp.
pallidum SS14]
gi|291059676|gb|ADD72411.1| dCMP deaminase [Treponema pallidum subsp. pallidum str. Chicago]
Length = 166
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 40/115 (34%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
S+D FM ++ C+I +D ++ G G P
Sbjct: 9 TRPSWDEYFMEVCHAIAKRATCDRG---RAGCVIARDHHLLVTGY---AGAPRGLLHCDE 62
Query: 54 -----------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL +A G GAT Y T+ PC
Sbjct: 63 HGHQLRTVQHEDGTCTQHCVRTVHAEQNALCQAARLGIGLEGATLYCTMTPCRTC 117
>gi|297618439|ref|YP_003703598.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297146276|gb|ADI03033.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 153
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------A 48
S+D F+ ++ T V L+VKD +I G
Sbjct: 7 SWDDYFLELTQVVAKRS---TCLRRHVGALLVKDERIIATGYNGAPQGLRHCLEAGCLRE 63
Query: 49 YGGCP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G P HAE A+ A G + Y T +PC R
Sbjct: 64 EKGIPSGVRYELCRGVHAEQNAIINAARYGVSTLDSVLYCTDQPCILCARM 114
>gi|217034301|ref|ZP_03439718.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
gi|216943273|gb|EEC22738.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10]
Length = 344
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 111/335 (33%), Gaps = 69/335 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R +
Sbjct: 185 RMNGDYCHG---KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKRSIDPNSKVFSAPNRLVNAFCDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|317154506|ref|YP_004122554.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316944757|gb|ADU63808.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 152
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM A ++ T T +V + V+ ++ G
Sbjct: 9 EYFMRIAHLVAQRS---TCTRRAVGAIAVRGKRILATGYNGVPTNIAHCEEVGCIRDKLK 65
Query: 47 ------TAYGGCPHAEVQALEEAGE---EARGATAYVTLEPCSHYGRS 85
HAE + +A + G Y T +PC +
Sbjct: 66 IPSGERHELCRGLHAEQNVIIQAATHHLDLTGCDIYCTTKPCILCTKM 113
>gi|300856157|ref|YP_003781141.1| putative purine deaminase, zinc-binding domain [Clostridium
ljungdahlii DSM 13528]
gi|300436272|gb|ADK16039.1| putative purine deaminase, zinc-binding domain [Clostridium
ljungdahlii DSM 13528]
Length = 163
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 3 VSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIV--------IGRGVTAYGGC 52
+S D ++ A ++ N L+V KDG + I G
Sbjct: 1 MSKKDHLYYLRRANEIAKNSRE--HGNTPFGALLVDKDGNILLEQENIEISTG----DCT 54
Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYG 83
HAE + A ++ T Y T EPC
Sbjct: 55 GHAEASLMRRASQKYSKEFLAECTLYTTFEPCVMCS 90
>gi|269102860|ref|ZP_06155557.1| dihydrofolate reductase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162758|gb|EEZ41254.1| dihydrofolate reductase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 177
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ L +G+T+L ++GG + SF+ ++D +I+ ++G GIP E
Sbjct: 99 IVEELQQKGLTTLYIDGGKTI-QSFLQQDMIDELIITTIPTILGG-GIPLF-GELDKPLK 155
Query: 338 FMCVRRDYF-GSDVCLEYIG 356
F ++ + G V Y+
Sbjct: 156 FKHIKAEQLAGCLVKNTYLR 175
>gi|266619532|ref|ZP_06112467.1| putative deoxycytidylate deaminase [Clostridium hathewayi DSM
13479]
gi|288868943|gb|EFD01242.1| putative deoxycytidylate deaminase [Clostridium hathewayi DSM
13479]
Length = 166
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 36/108 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
++D FM A+ + + V IV +D ++ G G P
Sbjct: 12 TWDEYFMGVAMLSGKRSK---DPSTQVGACIVSQDNKILSMGY---NGFPKGCSDDEFPW 65
Query: 54 ------------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 66 GKEHEKDDPYNAKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 113
>gi|149187333|ref|ZP_01865631.1| Dihydrofolate reductase [Vibrio shilonii AK1]
gi|148838869|gb|EDL55808.1| Dihydrofolate reductase [Vibrio shilonii AK1]
Length = 176
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G +L ++GG + SF+ L+D +I+ +++G GIP E
Sbjct: 98 DIVSDLNSKGYKNLYIDGGKTI-QSFLAEDLIDEMIITTIPVLLGG-GIPLF-GELDKPL 154
Query: 337 NFMCVRRDYFGSDV-CLEYIG 356
F V + + + Y+
Sbjct: 155 KFQHVSAERYADCIVKNRYVK 175
>gi|317179684|dbj|BAJ57472.1| riboflavin biosynthesis protein [Helicobacter pylori F30]
Length = 344
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 108/336 (32%), Gaps = 71/336 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------ 63
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKVLRP 67
Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V+ ++ + + GL L + I V L +K K+A+
Sbjct: 128 VIATEENEAKKG--GLARLQKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALR 185
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ ITG S H RA D ++V T+ D+P L R
Sbjct: 186 MNG-----DYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQDK 240
Query: 220 MR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
I + + +SK+ D P
Sbjct: 241 NPNIAILSKRSIDPNSKVFSAPNRLVNAFCDPKDLP------------------------ 276
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|53719734|ref|YP_108720.1| putative deaminase [Burkholderia pseudomallei K96243]
gi|52210148|emb|CAH36126.1| putative deaminase [Burkholderia pseudomallei K96243]
Length = 174
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 30 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 89
Query: 81 HYGRSPP 87
+
Sbjct: 90 MCSGAIM 96
>gi|295425707|ref|ZP_06818394.1| deoxycytidylate deaminase [Lactobacillus amylolyticus DSM 11664]
gi|295064723|gb|EFG55644.1| deoxycytidylate deaminase [Lactobacillus amylolyticus DSM 11664]
Length = 160
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-------------------A 48
FM AL ++ + V ++V+D +IG G
Sbjct: 9 QYFMMQALVIAQRSTCNRA---LVGSVLVRDNRIIGTGYNGSISRQPHCDDVGHQMVDGH 65
Query: 49 YGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
H+E+ +L + G G YVT PC +
Sbjct: 66 CVRTIHSEMNSLIQCAKNGVSTDGTEIYVTHFPCYNC 102
>gi|188589366|ref|YP_001919994.1| cytidine/deoxycytidylate deaminase family protein [Clostridium
botulinum E3 str. Alaska E43]
gi|188499647|gb|ACD52783.1| guanine deaminase [Clostridium botulinum E3 str. Alaska E43]
Length = 157
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66
M ++ + + P IVKD +I H E+ A+ +A +
Sbjct: 7 MDLCVKQCKEGMLNLEGGP-FGAAIVKDSKIIALANNTVIKDNDPTAHGEMNAIRQACNK 65
Query: 67 -----ARGATAYVTLEPCSHY 82
G Y T EPC
Sbjct: 66 LSTFDLSGCELYTTSEPCPMC 86
>gi|261749231|ref|YP_003256916.1| putative cytosine/adenosine deaminase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497323|gb|ACX83773.1| putative cytosine/adenosine deaminase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 141
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66
M AL + + I + +I R T HAE+ + A +
Sbjct: 1 MKIALEEALIAFHK--DEVPIGAAITYENGIIARAHNLTETLSDITAHAEMLVINLASDY 58
Query: 67 A-----RGATAYVTLEPCSHY 82
+ T YVT+EPC
Sbjct: 59 LGKKYIQECTLYVTMEPCIMC 79
>gi|148240547|ref|YP_001225934.1| pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp. WH
7803]
gi|147849086|emb|CAK24637.1| Pyrimidine reductase, riboflavin biosynthesis [Synechococcus sp. WH
7803]
Length = 228
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE------GGIPSPLEEGYLEKNF 338
G + +++ GGA + S + VD + L V+G + E +
Sbjct: 139 HGWSRVVLLGGARLCESMLADDAVDELQLTLCPRVLGGPFGWVPANAQALPETLAAADAW 198
Query: 339 MCVRRDYFGSD-VCLEYIGKN 358
+ G + + + Y
Sbjct: 199 LLEHSRPLGGNELLVRYRRNR 219
>gi|33519984|ref|NP_878816.1| putative cytosine/adenosine deaminase [Candidatus Blochmannia
floridanus]
gi|33504330|emb|CAD83223.1| cytosine/adenosine deaminase zinc-binding region; hydrolase
activity [Candidatus Blochmannia floridanus]
Length = 159
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
+M A+ + G S V ++V + +IG G HAE+ AL
Sbjct: 10 WMCYAVMLANIADLNGDVS----VGAVLVYNERLIGCGYNASIKNNDPSAHAEIVALRIG 65
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E T YVTLEPC
Sbjct: 66 AEVLGNYRLLNTTLYVTLEPCMMC 89
>gi|88798973|ref|ZP_01114554.1| putative deoxycytidylate deaminase [Reinekea sp. MED297]
gi|88778200|gb|EAR09394.1| putative deoxycytidylate deaminase [Reinekea sp. MED297]
Length = 149
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 18/119 (15%)
Query: 27 TNPSVACLIVKDGIVIGRGVTAYG-G----------------CPHAEVQALEEAGEEARG 69
+ V +I + ++ G Y G HAE A+ A
Sbjct: 23 PSTQVGAVITEQNRIVSLGFNGYPHGISDSAETDDREMKLLKTLHAEENAILFAKRNLDD 82
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
+VT PC + I L+Q G+ +D
Sbjct: 83 CDIWVTHFPCPNCAAKI-IQTGISTVHCPEQSEDFLSRWGEKIKISEDMLAQAGVTIDW 140
>gi|332980851|ref|YP_004462292.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
BON]
gi|332698529|gb|AEE95470.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1
BON]
Length = 170
Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM+ + + T V +IVKD ++ G
Sbjct: 4 SWDEYFMNM-VEIVKTR--STCLRRQVGAIIVKDKRMLASGYNGAPSGVRHCDEVGCLRE 60
Query: 47 --TAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
G HAE A+ +A G + AT Y+T +PC+ +
Sbjct: 61 QMHIPSGQRQELCRAIHAEQNAIAQAAMMGISVKDATIYITTQPCAICAKM 111
>gi|157963151|ref|YP_001503185.1| deaminase-reductase domain-containing protein [Shewanella pealeana
ATCC 700345]
gi|157848151|gb|ABV88650.1| bifunctional deaminase-reductase domain protein [Shewanella
pealeana ATCC 700345]
Length = 177
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+++ L +G +L ++GG + F+ L+D +I+ +++G G S E
Sbjct: 97 PQVIKQLNDQGYNNLYIDGGKTIQG-FLQQDLIDEMIITTIPVLLGGG--ISLFGELASP 153
Query: 336 KNFMCVRRDYFGS 348
F + +
Sbjct: 154 LKFKHAKAERLLD 166
>gi|306521161|ref|ZP_07407508.1| hypothetical protein CdifQ_16396 [Clostridium difficile QCD-32g58]
Length = 115
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + F+ L+D +Y I++G G S + G + N + G
Sbjct: 30 IWIVGGGDIVKLFMKDNLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKVSNIGEL 87
Query: 350 VCLEYIGK 357
V LEY K
Sbjct: 88 VKLEYSKK 95
>gi|146321900|ref|YP_001201611.1| cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
gi|145692706|gb|ABP93211.1| Cytosine/adenosine deaminase [Streptococcus suis 98HAH33]
Length = 141
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 35 IVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
IVKDG +IGRG A HAEV A++EA +T +VT+EPC
Sbjct: 2 IVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPCVMCS 59
>gi|119493586|ref|ZP_01624250.1| Deoxycytidylate deaminase [Lyngbya sp. PCC 8106]
gi|119452576|gb|EAW33759.1| Deoxycytidylate deaminase [Lyngbya sp. PCC 8106]
Length = 181
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
S+D F+ A + L V +IVKD V+ G + G H
Sbjct: 13 SWDEYFLMLAKLAATRSTCLAFP---VGAVIVKDRQVVATGYNGSPSGSVH 60
>gi|50550031|ref|XP_502488.1| YALI0D06501p [Yarrowia lipolytica]
gi|49648356|emb|CAG80676.1| YALI0D06501p [Yarrowia lipolytica]
Length = 250
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+H+TL A S D+ I I+ +K H LRA D ILVG+ T + D+P L C
Sbjct: 28 NHVTLTYAQSLDSRIAAKRDERTTISSEETKRMTHWLRAHHDGILVGVQTAIIDNPGLHC 87
Query: 210 RLNGLQEHS-----PMRIILDPHFKL-----SLDSKIIKTALLAPVIIVTE-----NDDP 254
+ +++ P IILDP F+ L AP+++
Sbjct: 88 KSFTDEDYKLQEQSPQPIILDPQFRWEFKATKLACNAAHNGYKAPIVVTKSGYEIDTAKK 147
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
++ D K + + G+ S++VEGGA V S + DS+++
Sbjct: 148 FKKKGIEDFGGKVLMLDDFSWKSIFDALHNDCGLKSIMVEGGAHVIESMLEVGAFDSLVV 207
Query: 314 YRSQIVIGEGGI 325
+ +G G+
Sbjct: 208 TVGPVFLGRAGL 219
>gi|284989070|ref|YP_003407624.1| CMP/dCMP deaminase protein [Geodermatophilus obscurus DSM 43160]
gi|284062315|gb|ADB73253.1| CMP/dCMP deaminase zinc-binding protein [Geodermatophilus
obscurus DSM 43160]
Length = 154
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ +++ DG V+ HAEV AL A G G T VTLEP
Sbjct: 26 PIGAVVLGPDGTVLAEAANEREKQGDPTAHAEVLALRAAARVHGDGWRLTGTTLVVTLEP 85
Query: 79 CSHY 82
C+
Sbjct: 86 CTMC 89
>gi|126178835|ref|YP_001046800.1| CMP/dCMP deaminase, zinc-binding [Methanoculleus marisnigri JR1]
gi|125861629|gb|ABN56818.1| CMP/dCMP deaminase, zinc-binding protein [Methanoculleus marisnigri
JR1]
Length = 173
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 32/97 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYG-GCPH----------- 54
+M A+ +R T ++V G ++ G G H
Sbjct: 19 EWYMGIAVETARRS---TCIRRCYGAVVVNSAGEIVSTGHNGAPRGEAHCDELNTCIRKQ 75
Query: 55 ----------------AEVQALEEAGEEARGATAYVT 75
AE+ AL +AG A G T Y+
Sbjct: 76 YNIPSGERYEFCRSVHAEMNALLQAGRAAAGCTMYLA 112
>gi|302530974|ref|ZP_07283316.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. AA4]
gi|302439869|gb|EFL11685.1| cytidine and deoxycytidylate deaminase [Streptomyces sp. AA4]
Length = 155
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 16/88 (18%)
Query: 11 MSA-----ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQAL 60
M A+R + + + ++ DG + A HAE+ AL
Sbjct: 1 MRRPDDTEAVRAALDAARAPGADVPIGAVVFDPDGRPLAAARNARVELADPTAHAEILAL 60
Query: 61 EEA------GEEARGATAYVTLEPCSHY 82
A G G T VTLEPC+
Sbjct: 61 RAAAREFGDGWRLEGCTLAVTLEPCTMC 88
>gi|189184848|ref|YP_001938633.1| cytosine deaminase [Orientia tsutsugamushi str. Ikeda]
gi|189181619|dbj|BAG41399.1| cytosine deaminase [Orientia tsutsugamushi str. Ikeda]
Length = 155
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQALE 61
FM A+ + +G V ++V ++ R T HAE+ A+
Sbjct: 2 FMLQAIEQASQAFNLGEV----PVGVVMVNRATRTILTRAYNKVETTLNPTFHAEIIAIN 57
Query: 62 EA-----GEEARGATAYVTLEPCSHY 82
+A + G YV+LEPC+
Sbjct: 58 KACSLLSCKYLHGYDIYVSLEPCAMC 83
>gi|116748127|ref|YP_844814.1| zinc-binding CMP/dCMP deaminase [Syntrophobacter fumaroxidans MPOB]
gi|116697191|gb|ABK16379.1| CMP/dCMP deaminase, zinc-binding [Syntrophobacter fumaroxidans
MPOB]
Length = 158
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 32/104 (30%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M + + AL ++ T +IVK +I G
Sbjct: 1 MNRPTKSEYYTEIALSVAQRS---TCLRRRFGAVIVKSDQIISTGYNGAPRKTANCIDLG 57
Query: 49 ---------YGGCP-------HAEVQALEEAGE-EARGATAYVT 75
G HAE+ A+ A + GA Y+
Sbjct: 58 YCARKQLSIPAGQNYELCRAVHAEMNAVIHASRLDMVGADLYLA 101
>gi|154687571|ref|YP_001422732.1| YwjB [Bacillus amyloliquefaciens FZB42]
gi|154353422|gb|ABS75501.1| YwjB [Bacillus amyloliquefaciens FZB42]
Length = 176
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ + + L R + + GG+ + H + +LVD I+ + +++G G
Sbjct: 88 HVRFIHEEPADFIKALKRREGKRIWIVGGSDLLHPVLEEKLVDEFIIQIAPVLLGRG--I 145
Query: 327 SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
S + G E + L Y +
Sbjct: 146 SLFKPGDRETGLKLTDVRRYKQFAELHYEVR 176
>gi|255718193|ref|XP_002555377.1| KLTH0G07832p [Lachancea thermotolerans]
gi|238936761|emb|CAR24940.1| KLTH0G07832p [Lachancea thermotolerans]
Length = 250
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQAL 60
FM A + +R+ + G T VAC+ V V+ G+ G HAE +
Sbjct: 8 HFMRMATKLARYALDHGET----PVACIFVHTPADQVVAYGMNDTNRSLTGIAHAEFMGI 63
Query: 61 EEAGEE--------ARGATAYVTLEPCSHY 82
E+ + + T YVT+EPC
Sbjct: 64 EQIQSKFGAQDTSIFKDITLYVTVEPCIMC 93
>gi|220910961|ref|YP_002486270.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
gi|219857839|gb|ACL38181.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
Length = 160
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAG--EEARGATAYVTLEPCSHY 82
+ + ++G+VI G G P H E+ AL AG R T Y TL PC+
Sbjct: 39 PIGAALARNGVVIASGHNERVQNGDPIAHGEMSALRAAGRQRSYRDTTLYTTLAPCAMC 97
>gi|283796628|ref|ZP_06345781.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
gi|291076051|gb|EFE13415.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1]
gi|295092489|emb|CBK78596.1| Deoxycytidylate deaminase [Clostridium cf. saccharolyticum K10]
gi|295115332|emb|CBL36179.1| Deoxycytidylate deaminase [butyrate-producing bacterium SM4/1]
Length = 176
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-G----------- 51
++D FM A + + V IV D ++ G + G
Sbjct: 22 TWDEYFMGVAKLAAMRSK---DPSTQVGACIVSSDNKILSMGYNGFPIGCSDDEFPWGKE 78
Query: 52 -------------CPHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 79 HETDDPYNAKYLYTTHSELNAILNYRGGSLEGSKLYVTLFPCNEC 123
>gi|315585891|gb|ADU40272.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 35A]
Length = 344
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 63/335 (18%), Positives = 116/335 (34%), Gaps = 69/335 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + G ++ +V +E++ K L + + + R K+A+
Sbjct: 128 VIATEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGR-FNLFKLALRM 186
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 187 NG-----DYYHGKITGQKSVVFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + + +SK+ D P
Sbjct: 242 PNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ---LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|312137792|ref|YP_004005128.1| cmp/dcmp deaminase [Rhodococcus equi 103S]
gi|325676107|ref|ZP_08155789.1| cytidine and deoxycytidylate deaminase [Rhodococcus equi ATCC
33707]
gi|311887131|emb|CBH46440.1| CMP/dCMP deaminase [Rhodococcus equi 103S]
gi|325553147|gb|EGD22827.1| cytidine and deoxycytidylate deaminase [Rhodococcus equi ATCC
33707]
Length = 152
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
V ++ DG+ + R A HAE+ AL A G GAT VTLEP
Sbjct: 26 PVGAVVFDADGVELARAANAREATGDPTAHAEILALRAAARVHGDGWRLEGATLAVTLEP 85
Query: 79 CSHY 82
C+
Sbjct: 86 CTMC 89
>gi|291244202|ref|XP_002741990.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Saccoglossus
kowalevskii]
Length = 209
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 27/139 (19%)
Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL- 60
++M +L + + G V CL+V VIG+G HAE+ A+
Sbjct: 13 RKWMEKSLDMAHDALFNGEV----PVGCLMVYKDEVIGKGRNCVNETRNATRHAEMVAID 68
Query: 61 ---------EEAGEEA-RGATAYVTLEPCSHYG------RSPPCAQFIIECGIRRVVVCV 104
+ E YVT+EPC P +
Sbjct: 69 EVIGWCEKSNQVKEAVFSKTVLYVTVEPCIMCAGALRLLHVPLVVYGCSNERFGGCGSVL 128
Query: 105 DDPDVRVSGRGLQWLSQKG 123
+ + G + G
Sbjct: 129 NVHKDDIDNHGKPFKCISG 147
>gi|188580489|ref|YP_001923934.1| bifunctional deaminase-reductase domain protein [Methylobacterium
populi BJ001]
gi|179343987|gb|ACB79399.1| bifunctional deaminase-reductase domain protein [Methylobacterium
populi BJ001]
Length = 234
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGY 333
L + GV L++EGGA +F+ + LVD I L + G G + +
Sbjct: 146 LEALSANFGVRRLILEGGAHTNAAFLKAGLVDEISLVLFPAIGGHSGSQTLFEAGEDGLA 205
Query: 334 LEKNFMCV--RRDYFGSDVCLEYIG 356
V G+ V L Y
Sbjct: 206 DRVRLSLVSAEVRQAGA-VALRYRV 229
>gi|114762709|ref|ZP_01442143.1| probable riboflavin-specific deaminase [Pelagibaca bermudensis
HTCC2601]
gi|114544619|gb|EAU47625.1| probable riboflavin-specific deaminase [Roseovarius sp. HTCC2601]
Length = 233
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL--EEGYL 334
L+ I GV+ LL+EGG + +F+ + L+D +V G+ G+ S +
Sbjct: 141 ALIRIGEAFGVSRLLLEGGGRMNGAFLAADLIDETSTLIYPVVDGQSGVASIYDHDGPIA 200
Query: 335 EKNFMCVRRDYF 346
+ + +
Sbjct: 201 ARRLELISSETL 212
>gi|148545117|ref|YP_001272487.1| deaminase-reductase domain-containing protein [Lactobacillus
reuteri DSM 20016]
gi|184154450|ref|YP_001842791.1| hypothetical protein LAR_1795 [Lactobacillus reuteri JCM 1112]
gi|227364274|ref|ZP_03848368.1| deaminase-reductase domain protein [Lactobacillus reuteri MM2-3]
gi|325683475|ref|ZP_08162991.1| deaminase-reductase domain protein [Lactobacillus reuteri MM4-1A]
gi|148532151|gb|ABQ84150.1| bifunctional deaminase-reductase domain protein [Lactobacillus
reuteri DSM 20016]
gi|183225794|dbj|BAG26311.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227070708|gb|EEI09037.1| deaminase-reductase domain protein [Lactobacillus reuteri MM2-3]
gi|324977825|gb|EGC14776.1| deaminase-reductase domain protein [Lactobacillus reuteri MM4-1A]
Length = 225
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMC 340
+ L + GG + F+ + LVD I + G G PS +
Sbjct: 148 EFNIDRLAIVGGGKINGGFLEAGLVDEISILIGAGADGRTGQPSLFDGRPESSRPIALQL 207
Query: 341 VRRDYFGSD-VCLEYIGK 357
F V L Y+ K
Sbjct: 208 KDVTSFDDGAVWLRYLVK 225
>gi|53723703|ref|YP_103157.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei ATCC 23344]
gi|52427126|gb|AAU47719.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
mallei ATCC 23344]
Length = 162
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 18 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 77
Query: 81 HYGRSPP 87
+
Sbjct: 78 MCSGAIM 84
>gi|300812075|ref|ZP_07092523.1| putative ComE operon protein 2 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496914|gb|EFK31988.1| putative ComE operon protein 2 [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 174
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD ++ G + G H
Sbjct: 24 QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 80
Query: 56 -------EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 81 CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKH 120
>gi|217958235|ref|YP_002336781.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus AH187]
gi|217063241|gb|ACJ77491.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus AH187]
Length = 174
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L + + + + GG ++ F + L+D ++ + ++G G+P ++ E
Sbjct: 95 EFTKRLKEQEGSKIWMVGGGSLLREFFKNNLIDEYVVTITPHILGS-GVPLFQDKNP-EI 152
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
+ FG V L Y K
Sbjct: 153 HLTLTYTKRFGQFVNLYYKVK 173
>gi|160942564|ref|ZP_02089811.1| hypothetical protein FAEPRAM212_00039 [Faecalibacterium
prausnitzii M21/2]
gi|158446148|gb|EDP23151.1| hypothetical protein FAEPRAM212_00039 [Faecalibacterium
prausnitzii M21/2]
Length = 169
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
V ++ + G V+ T HAE+ A++ A + G +VTLEPC
Sbjct: 27 PVGAVVARHGEVVATAHNTRETEKNALHHAELLAIDAACKALGGWRLWECELFVTLEPCP 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|149914091|ref|ZP_01902623.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
sp. AzwK-3b]
gi|149812375|gb|EDM72206.1| cytidine and deoxycytidylate deaminase family protein [Roseobacter
sp. AzwK-3b]
Length = 157
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V G ++ R HAE+ + EA E G YVTLEPC
Sbjct: 24 PVGAVLVDPKGRIVARAGNRTRELSDPTAHAEILVIREACAAVGSERLPGYALYVTLEPC 83
Query: 80 SHYGRSPPCAQFIIECG 96
+ + A+
Sbjct: 84 AMCATAISAARIARLYY 100
>gi|326804375|ref|YP_004327179.1| hypothetical protein PsPhPAKP1_gp034 [Pseudomonas phage PAK_P1]
gi|290873788|gb|ADD64991.1| hypothetical protein ORF_0034 [Pseudomonas phage PAK_P1]
gi|294998930|gb|ADF58244.1| putative dCMP deaminase [Pseudomonas phage JG004]
Length = 138
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M V +M AA F++ S V ++VK +I G A
Sbjct: 1 MKVKHI-KAYMEAAEAFAKCSDSTRSK---VGAVLVKRNRIISCGYNALPEHLNGPLEDE 56
Query: 49 ----YGGCPHAEVQALE---EAGEEARGATAYVTLEPCSHY 82
HAE AL + E A+GAT +VT C +
Sbjct: 57 TGVTKAEVRHAEENALRALIRSPESAQGATLFVTHSCCKNC 97
>gi|209694654|ref|YP_002262582.1| hypothetical protein VSAL_I1096 [Aliivibrio salmonicida LFI1238]
gi|208008605|emb|CAQ78781.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 177
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ + +G L ++GG + SF+ L+D +I+ +++G G +
Sbjct: 98 EVIKGINEQGFEHLYIDGGVTI-QSFLKEDLIDEMIITTIPVLLGGG--SPLFGDLNAPL 154
Query: 337 NFMCVRRDYFGS 348
NF V+ + F +
Sbjct: 155 NFKFVKNEVFLN 166
>gi|188528275|ref|YP_001910962.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
gi|188144515|gb|ACD48932.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470]
Length = 344
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 109/336 (32%), Gaps = 71/336 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------ 63
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V+ ++ + + GL L + I V L +K K+A+
Sbjct: 128 VIATEENEAKKG--GLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALR 185
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 186 MNG-----DYCHGKITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNK 240
Query: 220 MR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
I + + +SK+ D P
Sbjct: 241 NPNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------ 276
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|311899518|dbj|BAJ31926.1| putative cytosine deaminase [Kitasatospora setae KM-6054]
Length = 153
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 9/142 (6%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
++ AL + + + + + DG ++GRG G P HAE A
Sbjct: 11 RAWLDVALAEAETGLAEGGI--PIGAALFRRDGELLGRGHNRRVQDGDPSMHAETSAFRA 68
Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG R TL PC + + G G+ L
Sbjct: 69 AGRLRGYRDTVMVTTLSPCWYCSGLVRQFGIGHVVIGESTTFTGGHDWLATHGTGITLLD 128
Query: 121 QKGIIVDRMMESEGKIFLHAYL 142
+ + + L
Sbjct: 129 DPRCVRLMTDFTTARPDLWYED 150
>gi|113968486|ref|YP_732279.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
gi|113883170|gb|ABI37222.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4]
Length = 157
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQALEEAG----- 64
L ++ V T + +IV + G ++ GV HAE+QA+ +A
Sbjct: 13 LALAQKEVEGTGL--PFSAVIVDESGRIVAEGVNRVQALHDCTAHAEIQAIRKATLLLKQ 70
Query: 65 EEARGATAYVTLEPCSHY 82
G T + EPC
Sbjct: 71 VSLEGMTLIASGEPCGFC 88
>gi|317138553|ref|XP_003189058.1| DRAP deaminase [Aspergillus oryzae RIB40]
Length = 179
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 33/159 (20%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNP---SVACLIVKD--GIVIGRGVT-----AYGGCP-- 53
+M AL +R +P V ++V ++ G + G P
Sbjct: 14 DHKGYMECALEKARLS----PPSPTKFCVGAVLVDADRNEILSTGYSMELPGDRPGDPGN 69
Query: 54 -HAEVQALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIR 98
HAE + ++ R Y T+EPCS G + +
Sbjct: 70 THAEQCCFIKVADQHNVPEAELVEVLPRNTVLYTTMEPCSRRLSGNRTCVQRILGLASSL 129
Query: 99 RVVVCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESEGK 135
+VV G + L G+ V + E +
Sbjct: 130 KVVYVGITEPETFIADNTGRKILEDAGVQVICVEGMEDR 168
>gi|308176278|ref|YP_003915684.1| cytosine deaminase [Arthrobacter arilaitensis Re117]
gi|307743741|emb|CBT74713.1| putative cytosine deaminase [Arthrobacter arilaitensis Re117]
Length = 158
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----------GEEARGATAY 73
+ +I+ G V+ G HAEV A+ A G T
Sbjct: 26 PIGAVILSPAGEVLATGRNEREAGNDPTAHAEVVAIRNAVKALEAKGEDDGWRLSDCTLV 85
Query: 74 VTLEPCSHY 82
VTLEPC+
Sbjct: 86 VTLEPCAMC 94
>gi|306823191|ref|ZP_07456567.1| riboflavin biosynthesis protein RibD domain protein
[Bifidobacterium dentium ATCC 27679]
gi|309801614|ref|ZP_07695735.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bifidobacterium dentium JCVIHMP022]
gi|304553823|gb|EFM41734.1| riboflavin biosynthesis protein RibD domain protein
[Bifidobacterium dentium ATCC 27679]
gi|308221746|gb|EFO78037.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bifidobacterium dentium JCVIHMP022]
Length = 222
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMC 340
GV + V GG + F+++ L+D + + + G G+ + + +
Sbjct: 146 EFGVERMAVVGGGTINGGFLDAGLLDEVSILIGPGIDGRKGMSATFDGLPMNHRPVALKL 205
Query: 341 VRRDYFGSD-VCLEY 354
+ + V L Y
Sbjct: 206 ESVTPYDNGAVWLRY 220
>gi|255606197|ref|XP_002538521.1| conserved hypothetical protein [Ricinus communis]
gi|223511748|gb|EEF23863.1| conserved hypothetical protein [Ricinus communis]
Length = 176
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG +A S L+D +Y +V+G G P V G + V L
Sbjct: 116 GGPDLARSLSALGLIDEYRIYLHPVVLG-EGSPFF---AGFRPKLRLVDSTRIGDEVVRL 171
Query: 353 EYIG 356
Y+
Sbjct: 172 TYVP 175
>gi|307170830|gb|EFN62941.1| tRNA-specific adenosine deaminase 2 [Camponotus floridanus]
Length = 171
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 25/99 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54
M +S+ +M AL+ + + G V CL + + +I G H
Sbjct: 1 MDISA----WMDVALQKAEESLRAGEV----PVGCLFIYNNEIIATGNNTVNETCNATRH 52
Query: 55 AEVQALEE----AGEE-------ARGATAYVTLEPCSHY 82
AE+ +++ E+ R VT+EPC
Sbjct: 53 AEINCIDQVLKFCKEKCLQYETVFRNLDVVVTVEPCIMC 91
>gi|193216732|ref|YP_001999974.1| deoxycytidylate deaminase [Mycoplasma arthritidis 158L3-1]
gi|193002055|gb|ACF07270.1| deoxycytidylate deaminase [Mycoplasma arthritidis 158L3-1]
Length = 173
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 32/117 (27%), Gaps = 45/117 (38%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
+D FMS A + + V IV ++ G G P
Sbjct: 10 DWDKYFMSLAKLSAMRSK---DPSTKVGACIVNTKNYIVSLGY---NGMPTSFNNTKINN 63
Query: 54 ------------------------HAEVQALEEAGEEAR----GATAYVTLEPCSHY 82
HAE A+ A + G+T YVT PC+
Sbjct: 64 DTQFPWDRPSNKDDIINSKYTYVVHAEQNAIINANITSSHIEPGSTLYVTHSPCAMC 120
>gi|298735524|ref|YP_003728045.1| riboflavin biosynthesis protein RibG [Helicobacter pylori B8]
gi|298354709|emb|CBI65581.1| Riboflavin biosynthesis protein (RibG) [Helicobacter pylori B8]
Length = 344
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 119/358 (33%), Gaps = 71/358 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + + L NPSVAC ++ K ++ PHAEV A + A +
Sbjct: 8 LEMCLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C++ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAK--KGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA + +++ T+ D+P L R +
Sbjct: 185 RMNGDYHHG---KITGQKSVIFTHNQRAICNTLIISGKTIRTDNPLLDARFCDHFYQNKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + + + +A V + D
Sbjct: 242 PNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLP------------------------- 276
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+ +G +EGG + S +D+++L+ +IGE + +P + L
Sbjct: 277 --LEKGFN--FIEGGWELFESL--RNKIDALLLHSHASMIGEAFSVLALKTPFKGRLL 328
>gi|298345726|ref|YP_003718413.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
gi|298235787|gb|ADI66919.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063]
Length = 180
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 13 AALR----FSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY-----GGCPHAEVQALEE 62
AL ++ G P V ++ +GIV G G+ HAE+ AL E
Sbjct: 35 RALDTAYGLAQKA-GRAGDIP-VGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEIVALRE 92
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A +G T TLEPC+
Sbjct: 93 AAGRLERWNLKGCTLVATLEPCTMC 117
>gi|283796591|ref|ZP_06345744.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
M62/1]
gi|291076004|gb|EFE13368.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
M62/1]
Length = 275
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSP 328
+ + G+ ++L+ GG + +F+ +VD L + + G +P
Sbjct: 182 CRTAVKKLYEFFGIKTMLICGGGMINWTFLQQGVVDEFSLLLAPVADGSPDTVSVFEQAP 241
Query: 329 LEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
+ F + + G V L Y
Sbjct: 242 ALSESVPVGFRLKKAEVLRGDGVRLLYT 269
>gi|308062769|gb|ADO04657.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Cuz20]
Length = 344
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 64/336 (19%), Positives = 110/336 (32%), Gaps = 71/336 (21%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 GLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159
V+ ++ + + GL L + I V L +K K+A+
Sbjct: 128 VIATEENEAKKG--GLARLKKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALR 185
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
+ ITG S H RA D ++V T+ D+P L R +
Sbjct: 186 MNG-----DYCHGRITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK 240
Query: 220 MR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
I + + +SK+ D P
Sbjct: 241 NPNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP------------------------ 276
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLH 304
>gi|258650784|ref|YP_003199940.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
44233]
gi|258554009|gb|ACV76951.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
44233]
Length = 159
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 1 MP--VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCP 53
MP + DA + AL +R T P + L++ DG+VIGRG A
Sbjct: 1 MPGARDAADAELIRQALNLARRA-PDTGDLP-IGALVLDPDGVVIGRGRNAREATGDPTA 58
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAE+ AL +A G T VT+EPC+
Sbjct: 59 HAEILALRQAAAARGQWNLTGCTLAVTVEPCTMC 92
>gi|227833262|ref|YP_002834969.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
gi|262184246|ref|ZP_06043667.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
gi|227454278|gb|ACP33031.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum
ATCC 700975]
Length = 216
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCVRR 343
+G + EGG +V +FI L+D + L + P
Sbjct: 140 QGARRISCEGGPSVYSAFIAEGLMDKLYLTLDPHLSPSVEKPVVDGAATSPALKLELENV 199
Query: 344 DYFGSDVCLEYIG 356
S V L Y
Sbjct: 200 TAVDSTVFLRYRR 212
>gi|163797849|ref|ZP_02191794.1| Cytosine/adenosine deaminase [alpha proteobacterium BAL199]
gi|159176893|gb|EDP61460.1| Cytosine/adenosine deaminase [alpha proteobacterium BAL199]
Length = 150
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGV----TAYGGCPHAEVQALE 61
+M+ AL + G V ++V G V+ T HAEV A+
Sbjct: 6 YMARALAQAESAASAGEV----PVGAVVVHAPSGRVLAEAGNRVETDCDPTAHAEVLAIR 61
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
A YVTLEPC+
Sbjct: 62 AAARALGAPRLVDCDLYVTLEPCAMC 87
>gi|260909419|ref|ZP_05916126.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
str. F0295]
gi|260636435|gb|EEX54418.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472
str. F0295]
Length = 155
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 21/103 (20%)
Query: 1 MPVSS------FDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TA 48
M ++ D + M AL ++ + G + +I G V+ R T
Sbjct: 2 MKMTQNDEQRQIDEQMMRKALAEAQQALAQGEV----PIGAVIACKGRVVARAHNLTETL 57
Query: 49 YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSP 86
HAE+QA+ A G+ T YVT+EPC +
Sbjct: 58 CDVTAHAEMQAITAAANMLGGKYLPECTLYVTVEPCPMCAGAC 100
>gi|222106196|ref|YP_002546987.1| CMP/dCMP deaminase zinc-binding [Agrobacterium vitis S4]
gi|221737375|gb|ACM38271.1| CMP/dCMP deaminase zinc-binding [Agrobacterium vitis S4]
Length = 163
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 1 MPVSS----FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR---GVTA-YGG 51
M S F+ + + + T N ++V DG V+
Sbjct: 1 MTFSPVTGLDHEYFLRLSFKVALRAQ-ETG-NHPFGAILVGPDGEVLMEQENAYNPTRDM 58
Query: 52 CPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE + A E T Y + EPC+
Sbjct: 59 TGHAERVLMTRASQAYTPERLNQCTMYTSAEPCAMC 94
>gi|86356205|ref|YP_468097.1| pyrimidine reductase protein [Rhizobium etli CFN 42]
gi|86280307|gb|ABC89370.1| putative pyrimidine reductase protein (dihydrofolate reductase
family) [Rhizobium etli CFN 42]
Length = 185
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 1/123 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + + + D LT L ++ +
Sbjct: 61 AYWPTAEDEDKIKSYMNGIAKIAVSRTMTEPGWNNARIVSDPIPELTRLKQEDGKTIFIF 120
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G AA+A S + + L+D I + +++G G E + + G+ V L
Sbjct: 121 GSAALADSLLKAGLIDEIRVCVVPVILGGGNPLFKANEAQVLLKLIESSTTQSGA-VILR 179
Query: 354 YIG 356
Y
Sbjct: 180 YEP 182
>gi|320536962|ref|ZP_08036947.1| hypothetical protein HMPREF9554_01683 [Treponema phagedenis F0421]
gi|320146197|gb|EFW37828.1| hypothetical protein HMPREF9554_01683 [Treponema phagedenis F0421]
Length = 88
Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-----EGYLEKNFMC 340
G+ L+V GG + +F++ VD + + + I G+ +K F
Sbjct: 10 GIRRLMVGGGGTINWTFLDRGFVDEVSMVIAPIANGDPNASRFFTAKEPYTKIKDKAFEL 69
Query: 341 VRRDYFGSDVCLEYIG 356
+ V
Sbjct: 70 KNVEVLDGGVIWALYK 85
>gi|312129561|ref|YP_003996901.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
gi|311906107|gb|ADQ16548.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
Length = 177
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+L +L+ L ++ +GGA V + + L+D I+ +++G G
Sbjct: 90 FYTGNLSELVKQLKSEKGKNIYCDGGAEVINELLKHDLIDEFIISVIPVLLGNGTR--LF 147
Query: 330 EEGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
++G E+ V+ F + + L YI K
Sbjct: 148 KDGRPEQTLEFVQAKTFETGLMQLHYIRKR 177
>gi|84386505|ref|ZP_00989532.1| pyrimidine reductase [Vibrio splendidus 12B01]
gi|84378610|gb|EAP95466.1| pyrimidine reductase [Vibrio splendidus 12B01]
Length = 177
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G+ +L ++GG + +F+ L+D +I+ +V+G G +
Sbjct: 98 QIVADLNNKGLKNLYIDGGITI-QNFLKEDLIDELIISTIPVVLGGG--SPLFGDLVSPV 154
Query: 337 NFMCVRRDYFGSDVC-LEYIGKN 358
NF + ++ Y+ K
Sbjct: 155 NFTLKGVTTYLDEIVQTHYLRKR 177
>gi|220904883|ref|YP_002480195.1| CMP/dCMP deaminase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869182|gb|ACL49517.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 158
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M + FM+ S T T V + VKD ++ G
Sbjct: 1 MQRLPWPEYFMNITYLVSGRS---TCTRRRVGAVAVKDKRILATGYNGAPAGVPHCLEVG 57
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G GA Y T PC +
Sbjct: 58 CLREQMGIPSGQRHEICRGLHAEQNVIIQAAVHGINISGAELYCTTHPCVQCSKM 112
>gi|308183608|ref|YP_003927735.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
gi|308065793|gb|ADO07685.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4]
Length = 344
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 63/338 (18%), Positives = 110/338 (32%), Gaps = 69/338 (20%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
+ L + H L NPSVAC ++ K+ ++ PHAEV A + A
Sbjct: 5 ENLLEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKI 64
Query: 64 --------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
+ +TLEPC+ YG++P C+ +
Sbjct: 65 LRPSLKNDLEKLEDPKILSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKP 124
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+RVV+ ++ + + GL L + I E K R +E++ L
Sbjct: 125 KRVVIATEENEAK--KGGLARLKKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFK- 181
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
++ ITG S H RA + ++V T+ D+P L R
Sbjct: 182 LALRMNGDYHHG---KITGPKSVIFTHNQRAICETLIVSGKTIRTDNPLLDARFCDSFYQ 238
Query: 218 SPMR-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ I + + +SK+ D P
Sbjct: 239 NKNPNIAILSKHSIDPNSKVFSAPNRLVNAFYDPKDLP---------------------- 276
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 ------LEKGFN--FIEGGWELFDSLRDK--IDALLLH 304
>gi|116250073|ref|YP_765911.1| hypothetical protein RL0305 [Rhizobium leguminosarum bv. viciae
3841]
gi|115254721|emb|CAK05795.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 176
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-- 293
+ P + K ++ +L+ + + L E
Sbjct: 51 MRYWDDEHPEWDAERHAFAAAWRNQPKWVVSRSSKSVGPNARLVEEDLAAAIRELKAERD 110
Query: 294 -----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
G +A S L+D +Y +V+G G P + D G
Sbjct: 111 GEIEVAGPNLAQSLTELGLIDEYRIYLHPVVLGH-GKPYFAGPR---PPLRLMAHDRIGE 166
Query: 349 D-VCLEYIG 356
D + L Y+
Sbjct: 167 DVIRLTYVP 175
>gi|328883182|emb|CCA56421.1| Cytosine deaminase [Streptomyces venezuelae ATCC 10712]
Length = 168
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 19/150 (12%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
++++ AL +R V + DG ++GRG HAE A
Sbjct: 25 RQWLATALAEARAGRDEGGV--PVGAALYGADGALLGRGHNRRVQDGDPSAHAETAAFRA 82
Query: 63 AG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG RG T TL PC + G WL+
Sbjct: 83 AGRQRSYRGTTMVTTLSPCWYCSGLVRQFGISRVVVGEA----------ETFHGGHDWLA 132
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
+ G+ V + + E + ++ R +
Sbjct: 133 EHGVEVLVLDDPECAALMREFVVRHPALWN 162
>gi|226366259|ref|YP_002784042.1| hypothetical protein ROP_68500 [Rhodococcus opacus B4]
gi|226244749|dbj|BAH55097.1| hypothetical protein [Rhodococcus opacus B4]
Length = 262
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+++ +AP+++ + DP + LA I + L+ L G+
Sbjct: 130 DPHARLFTDTEVAPIVVTCADADPARIRDLAAAGARIVTAGEVQITSEGLIAALDDLGLR 189
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L EGG ++ I VD + L + ++ G G + +
Sbjct: 190 RVLCEGGPSLFGQLIADDSVDEVCLTTAPVLASGTAGRVATAPGARITAMTPAHILTDTD 249
Query: 348 SDVCLEYIG 356
V ++
Sbjct: 250 GTVLTRWVR 258
>gi|119961000|ref|YP_947142.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119947859|gb|ABM06770.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 235
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ V + + + L G
Sbjct: 110 WDKGWRGWWGDEPPYHAPVFVLTHHQHEPLEMEGGTSFHFVTDGIESALARAREAAGDRD 169
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA A F+++ L+D + L+ + +++G G L +G + G
Sbjct: 170 VAIAGGAQTARQFLSAGLMDELRLHIAPMILGGGER---LLDGVGDVKLEQAEVRGTGLV 226
Query: 350 VCLEYIG 356
+ Y+
Sbjct: 227 THVRYLV 233
>gi|167846243|ref|ZP_02471751.1| cytidine/deoxycytidylate deaminase family protein [Burkholderia
pseudomallei B7210]
Length = 141
Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +IV+ VI RG G HAE+ AL A G YVTLEPC
Sbjct: 66 PVGAVIVRGDEVIARGFNHPIGGHDPSAHAEMAALRAAARALRNYRMPGCELYVTLEPCL 125
Query: 81 HYGRSPP 87
+
Sbjct: 126 MCSGAIM 132
>gi|310658939|ref|YP_003936660.1| ywjb [Clostridium sticklandii DSM 519]
gi|308825717|emb|CBH21755.1| YwjB [Clostridium sticklandii]
Length = 170
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG + +++ +VD+II+ + +++G G+P ++ L K F +G
Sbjct: 103 KNIWVVGGNTLLAPLLDNDMVDNIIIQIAPVLLG-DGVPLFSQKESL-KRFYLKEVKKYG 160
Query: 348 SDVCLEY 354
L Y
Sbjct: 161 QFAELVY 167
>gi|119718363|ref|YP_925328.1| cytosine deaminase [Nocardioides sp. JS614]
gi|119539024|gb|ABL83641.1| Cytosine deaminase [Nocardioides sp. JS614]
Length = 154
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEE 62
D + A+ +R + + +++ DG V+G G G H E LE
Sbjct: 3 DEEMLVLAVEEARRGLAEGGI--PIGAVLIHDGEVLGGGHNRRVQLGSAIRHGETDCLEN 60
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G A+ Y + C I+ GI RVVV + R G + L+ +
Sbjct: 61 IGRLP--ASVYARSTMVTTLSPCDMCTGAILLYGIPRVVVG----ENRNFLGGEELLASR 114
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRS 150
G+ V + + + ++ +
Sbjct: 115 GVEVVVLDDLGCVEMMATFIAEHPTLWN 142
>gi|29828749|ref|NP_823383.1| hypothetical protein SAV_2208 [Streptomyces avermitilis MA-4680]
gi|29605853|dbj|BAC69918.1| putative hydrolase [Streptomyces avermitilis MA-4680]
Length = 272
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVR 342
G+T LL EGG + + + ++D + L S +++ G+ + + F V
Sbjct: 198 DLGMTRLLTEGGPRLLGQLVAAGVLDEMCLALSPMLVAGDAQRIASGPSVAVPARFELVS 257
Query: 343 RDYFGSDVCLEYIGK 357
+ Y +
Sbjct: 258 LLEDAGFLFGRYRRR 272
>gi|255935941|ref|XP_002558997.1| Pc13g05630 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583617|emb|CAP91632.1| Pc13g05630 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 165
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA--L 60
S FM AL + G T V C++V + ++G G+ + L
Sbjct: 11 SKHGYFMKQALLMGEKAIQSGET----PVGCVLVHNDQIVGYGMNDTNRS----MNVKML 62
Query: 61 EEAGEEARGAT-AYVTLEPCSHY 82
+ A +T YVT+EPC
Sbjct: 63 QSHPRSALQSTDLYVTVEPCVMC 85
>gi|145345338|ref|XP_001417171.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577398|gb|ABO95464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 170
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 18/86 (20%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKD--GIVIGRGVT--AYGGCP--HAEVQALEE 62
M AL + G +A ++V G V+ G P HAE+ +
Sbjct: 1 MRRALALALDAGSQGEV----PIAAVLVDATTGEVVAEAANRCERDGDPTAHAEMLLIRL 56
Query: 63 AGEEARG------ATAYVTLEPCSHY 82
E+ G YVTLEPC+
Sbjct: 57 GAEKLGGWRHLKRTRMYVTLEPCAMC 82
>gi|332711139|ref|ZP_08431073.1| deoxycytidylate deaminase [Lyngbya majuscula 3L]
gi|332350121|gb|EGJ29727.1| deoxycytidylate deaminase [Lyngbya majuscula 3L]
Length = 190
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IV++ ++ G + G H
Sbjct: 7 NWDEYFLMMAKLAATRSTCLAFP---VGAVIVQNNQILATGYNGSPSGSIH 54
>gi|329935857|ref|ZP_08285660.1| riboflavin biosynthesis protein RibD [Streptomyces
griseoaurantiacus M045]
gi|329304700|gb|EGG48575.1| riboflavin biosynthesis protein RibD [Streptomyces
griseoaurantiacus M045]
Length = 205
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 3/130 (2%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
K V + L G
Sbjct: 78 RGGWDRPWKGWWGENPPYHAPVFVLTHHPRDPQPMDGGTTFHFVTDGIESALRQAREAAG 137
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
++ + GGA + ++ + L+D + L+ +G G L +G N V
Sbjct: 138 DRNVSIHGGATTINQYLAAGLIDELRLHIVPFTLGAGTR---LFDGVPALNLEQVESRTA 194
Query: 347 GSDVCLEYIG 356
S + Y
Sbjct: 195 DSVTHVTYRV 204
>gi|307638162|gb|ADN80612.1| Diamino hydroxy phosphoribosyl amino pyrimidine
deaminase/5-amino-6-5-phosphoribosyl amino
uracilreductase [Helicobacter pylori 908]
gi|325996761|gb|ADZ52166.1| Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylamino uracil
reductase [Helicobacter pylori 2018]
gi|325998356|gb|ADZ50564.1| putative riboflavin specific deaminase [Helicobacter pylori 2017]
Length = 344
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 66/355 (18%), Positives = 116/355 (32%), Gaps = 71/355 (20%)
Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA----- 67
L + + L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70
Query: 68 ------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
+ +TLEPC+ YG++P C+ + +RVV+
Sbjct: 71 SDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
++ + + GL L + I E K R +E+R L ++
Sbjct: 131 AEENEAK--KGGLARLQKAHIETMICCNLENKAKDLLLPFRIMEQRGRFNLFK-LALRMN 187
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
ITG S H RA D +++ T+ D+P L R I
Sbjct: 188 GDYHHG---KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNI 244
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + +A V + + +
Sbjct: 245 AILSKRSISPHSKVFSAPNRLVNTFHDPK---------------------------DLSL 277
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334
+G +EGG + S + +D ++L+ +IGE + +P + L
Sbjct: 278 NKGFN--FIEGGWGLFESLRDK--IDILLLHSHASMIGEAFNTLALKTPFKGRLL 328
>gi|323144363|ref|ZP_08078972.1| hypothetical protein HMPREF9444_01634 [Succinatimonas hippei YIT
12066]
gi|322415865|gb|EFY06590.1| hypothetical protein HMPREF9444_01634 [Succinatimonas hippei YIT
12066]
Length = 230
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--------NF 338
V +LL+EGG AV SF+ ++L++ + V G GI S + +K
Sbjct: 148 VKNLLLEGGGAVNGSFLKAKLINEFSILVYPSVDGMSGIDSIVNYQGEDKSDIPGKGAQL 207
Query: 339 MCVRRDYFGSD-VCLEY 354
+ + F D V L Y
Sbjct: 208 HLLTCEKFSGDVVLLRY 224
>gi|302921194|ref|XP_003053238.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734178|gb|EEU47525.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 177
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 27/155 (17%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG--------GCPHA 55
FM AL ++ + V ++V G V+ G + G HA
Sbjct: 13 DHEAFMEFALIQAQKSPPAANK-FCVGAILVDAAKGKVLSTGYSLEYPRDYKGDPGTTHA 71
Query: 56 EVQALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVV 101
E + +E Y T+EPC+ G + + + V
Sbjct: 72 EQCCFIKIADEHNLPEERIHEVLPANTALYTTMEPCNERLSGNMTCTTRILRLQSAIKTV 131
Query: 102 VCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESEG 134
G + L G+ V +E
Sbjct: 132 YVGIKEPGTFIAHNDGQEKLEANGVKVVFPVEHWR 166
>gi|149916459|ref|ZP_01904977.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
AzwK-3b]
gi|149809630|gb|EDM69485.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
AzwK-3b]
Length = 275
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 10/207 (4%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+I S D I + ++G +H +RA D +++G+ T L D P LT
Sbjct: 50 PITVAQIGQSLDGRIATVTGDARDVSGPDGLAHLHRMRALVDGVVIGVRTALHDSPRLTV 109
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R + +P RI++DP +L D+ +++ ++I A +
Sbjct: 110 R--LCKGPNPARIVIDPRGRLPDDAPLLRADGTRRIVI---QAVDRPRPAGVEVIRLNDR 164
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GI 325
D ++L+ L +G+++L++EGG F+ +R + + + + ++IG G +
Sbjct: 165 ESLLDPAQILSALRAKGLSTLMIEGGGITISRFLEARRLTRLQVAVAPLLIGAGPQGLTM 224
Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCL 352
PSP E+ R GSDV
Sbjct: 225 PSPTEKLSDAIRPQ-TRAFSLGSDVVF 250
>gi|157826299|ref|YP_001494019.1| cytosine deaminase [Rickettsia akari str. Hartford]
gi|157800257|gb|ABV75511.1| cytosine deaminase [Rickettsia akari str. Hartford]
Length = 159
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPH 54
M ++F FM AL+ +R V ++V+ + ++ H
Sbjct: 9 MSFNNF---FMEQALKQARLAFDKNEV--PVGAVMVERLNQKIVINSHNNTEEKNNALYH 63
Query: 55 AEVQALEEAG-----EEARGATAYVTLEPCSHY 82
AE+ A+ E + YVTLEPC+
Sbjct: 64 AEIIAINEVCNLISSKNLNDYDIYVTLEPCAMC 96
>gi|325849001|ref|ZP_08170511.1| putative ComE operon protein 2 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480645|gb|EGC83707.1| putative ComE operon protein 2 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 146
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-AYGGCPH-------- 54
+++ F+ A + T V C++V + +I G + G PH
Sbjct: 7 TWNQYFIKLAHMVALRG---TCDRAYVGCVLVNNENRIISTGYNGSIKGNPHCDEVGHTM 63
Query: 55 ----------AEVQAL---EEAGEEARGATAYVTLEPCSHY 82
AE+ AL + G + + YVT PC +
Sbjct: 64 RDGHCIATIHAEMNALLYCAKEGISVKNSICYVTHFPCLNC 104
>gi|325104248|ref|YP_004273902.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
gi|324973096|gb|ADY52080.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
Length = 206
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ A V ++T I L+K G+ + ++G
Sbjct: 86 HWAEDLYKADVYVLTHEKREPWVQKGTTTFYFINDGIQSALEKARQSAKGKDIR---IQG 142
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA F+N+ LVD ++ + + +G G L +G + + + S++
Sbjct: 143 GANTIQQFLNAGLVDEFFIHIAPVFLGSGIR---LFDGIDKDKYDIQIMEVIPSNLTTHL 199
Query: 355 IGK 357
K
Sbjct: 200 RYK 202
>gi|300867695|ref|ZP_07112340.1| CMP/dCMP deaminase, zinc-binding [Oscillatoria sp. PCC 6506]
gi|300334278|emb|CBN57512.1| CMP/dCMP deaminase, zinc-binding [Oscillatoria sp. PCC 6506]
Length = 197
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IVKD V+ G + G H
Sbjct: 15 TWDEYFLMLAKLAATRSTCLAFP---VGAVIVKDRQVVATGYNGSPSGSVH 62
>gi|254488088|ref|ZP_05101293.1| tRNA-specific adenosine deaminase [Roseobacter sp. GAI101]
gi|214044957|gb|EEB85595.1| tRNA-specific adenosine deaminase [Roseobacter sp. GAI101]
Length = 151
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCP 53
M +S FM+ AL +R G V +V G V+ R
Sbjct: 1 MVFTS----FMNIALEEARDAAERGEV----PVGAAVVSPQGQVVARSGNRTRELNDPTA 52
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAEV A+ A E G YVTLEPC+
Sbjct: 53 HAEVLAIRAACAAAGSERLGGYALYVTLEPCAMC 86
>gi|215422331|ref|NP_001135855.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog [Nasonia
vitripennis]
Length = 169
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62
+M AL + + G V CL + + +I G HAE+ +++
Sbjct: 5 EWMDKALEKAEESLKKGEV----PVGCLFLYENKIIATGSNTVNETRNATRHAELNCIDD 60
Query: 63 A-----------GEEARGATAYVTLEPCSHY 82
E + VT+EPC
Sbjct: 61 VLVFCQKNNYNYKEVFKNIDVVVTVEPCIMC 91
>gi|251798524|ref|YP_003013255.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
JDR-2]
gi|247546150|gb|ACT03169.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
JDR-2]
Length = 188
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 8/137 (5%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
+S+ + + V++ K N ++ + + L
Sbjct: 59 YWPTVLDDPNESRHSIEHAK----WLQDVKKIVISSTMDKPEWNNTMLIKDNIAEEIKAL 114
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ +L++ G A + + L+D +L +V+G G + +G + +
Sbjct: 115 KEQPGKNLVIFGSPGAAKTLLELGLIDEFLLTICPVVLGSGKS---VFDGGEKIRLKLLS 171
Query: 343 RDYFGSDVC-LEYIGKN 358
F S + Y +
Sbjct: 172 SRTFDSGIIATRYELEK 188
>gi|332702307|ref|ZP_08422395.1| bifunctional deaminase-reductase domain protein [Desulfovibrio
africanus str. Walvis Bay]
gi|332552456|gb|EGJ49500.1| bifunctional deaminase-reductase domain protein [Desulfovibrio
africanus str. Walvis Bay]
Length = 173
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ +EGGA VA F++ L+D I+L +++G+G + + F F
Sbjct: 106 KNVWIEGGANVAQQFLDRELIDVIVLSIVPVILGDGIR--LFGKTHKMIEFTLREVRQFD 163
Query: 348 SDVC-LEYIG 356
+ L YI
Sbjct: 164 KGLVQLTYIR 173
>gi|319403672|emb|CBI77257.1| Cytosine/adenosine deaminase [Bartonella rochalimae ATCC
BAA-1498]
Length = 150
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M ++ M AL ++ V +I +I R + HAE
Sbjct: 1 MRLTP-----MEIALLEAQSAKKQDEI--PVGAVITHGQTIIARAGNYIKNPHDPTGHAE 53
Query: 57 VQALEEAG-----EEARGATAYVTLEPCSHY 82
++ + A E YVTLEPC+
Sbjct: 54 MRVIRIACQIFKSERIPECDIYVTLEPCAMC 84
>gi|227872741|ref|ZP_03991064.1| hypothetical protein HMPREF6123_1003 [Oribacterium sinus F0268]
gi|227841402|gb|EEJ51709.1| hypothetical protein HMPREF6123_1003 [Oribacterium sinus F0268]
Length = 83
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 32/90 (35%)
Query: 1 MPVSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKD-------------------G 39
M + D +M AL ++ G + LIV D G
Sbjct: 1 MK-TEKD--YMKMALSLAKKAASRGDV----PIGALIVYDGTKPDSPMGRLCQAKGILPG 53
Query: 40 IVIGRGVTAYGGCP----HAEVQALEEAGE 65
++GRG H E+ A+E+A +
Sbjct: 54 TILGRGYNRRNQKNNALYHGEILAIEKACK 83
>gi|226308791|ref|YP_002768751.1| cytosine deaminase [Rhodococcus erythropolis PR4]
gi|229489217|ref|ZP_04383083.1| cytosine deaminase [Rhodococcus erythropolis SK121]
gi|226187908|dbj|BAH36012.1| putative cytosine deaminase [Rhodococcus erythropolis PR4]
gi|229324721|gb|EEN90476.1| cytosine deaminase [Rhodococcus erythropolis SK121]
Length = 154
Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 10/141 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62
D F+ A+ ++ + ++ G V+ G H E +E
Sbjct: 8 DEYFLGLAIEQAKIGWEEGGV--PIGAALIHRGEVLAVGRNRRVQMNSAIRHGETDCIER 65
Query: 63 AGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
AG R Y TL PC + + + +R SG +
Sbjct: 66 AGRLPASVYRECVLYTTLSPCFMCAGTARLYEIPRIVVGENRSFEASEEWLRSSGIQVDV 125
Query: 119 LSQKGIIVDRMMESEGKIFLH 139
+ + + L
Sbjct: 126 VDDAECVALMDRMLAERPSLW 146
>gi|330999408|ref|ZP_08323122.1| ComE operon protein 2 family protein [Parasutterella
excrementihominis YIT 11859]
gi|329574834|gb|EGG56393.1| ComE operon protein 2 family protein [Parasutterella
excrementihominis YIT 11859]
Length = 138
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 31/108 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + + +M+ A ++ V C+IVK+ +I G G P
Sbjct: 1 MDIKKDNEMYMTIAQIAAQRSYAKRLK---VGCIIVKNHSIISFGW---NGMPTGYDNCC 54
Query: 54 ---------------HAEVQAL---EEAGEEARGATAYVTLEPCSHYG 83
HAE+ A+ + G + GA ++T PC H
Sbjct: 55 EYEVDGKLVTRPEVQHAELNAIAKLAQNGYSSNGAKIFITHSPCIHCS 102
>gi|326536349|ref|YP_004300790.1| Cd dCMP deaminase [Acinetobacter phage 133]
gi|299483430|gb|ADJ19524.1| Cd dCMP deaminase [Acinetobacter phage 133]
Length = 185
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 64/200 (32%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+ FM A S+ ++ V +I K+G +I G + G
Sbjct: 1 MKSST----FMQIAYLVSQESKCVSWK---VGAVIAKNGRIISTGYNGSPAGGVNCCDHA 53
Query: 54 ---------------------------------------HAEVQALEEA---GEEARGAT 71
HAE+ A+ A G GAT
Sbjct: 54 SEQNWTTGQYDPAPPHINRVTLKTECRDLHSKWSAHNEIHAELNAILYAARNGTAIEGAT 113
Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131
YVTL PC+ ++ + + + R++ + L++ GI V ++ +
Sbjct: 114 LYVTLSPCADCAKAIAQSGIKQ--------LVYSETYDRITPGWEKILTEAGIEVHQIGK 165
Query: 132 SEGKIFLHAYLTRQVEKRSH 151
+ + + +
Sbjct: 166 QKLHQLNWGTIVNFGGQHGN 185
>gi|254780015|ref|YP_003058122.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
gi|254001928|emb|CAX30181.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38]
Length = 344
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 67/374 (17%), Positives = 120/374 (32%), Gaps = 74/374 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + H L NPSVAC ++ K+ ++ HAEV A + A + R
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 HLKNDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGLARLQKACIETIICRNLENKAKDLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R
Sbjct: 185 RMNGDYHHG---KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYQHKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + + +A V + D
Sbjct: 242 PNIAILSKRSIDPHSKVFSAPNRLVNTFHDPKDLP------------------------- 276
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM- 339
+ +G +EGG + S + +D+++L+ +IG+ L+ F
Sbjct: 277 --LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGKA-----FNTLALKTPFKG 325
Query: 340 -CVRRDYFGSDVCL 352
+ ++ L
Sbjct: 326 RLLHVQILENEALL 339
>gi|21322992|dbj|BAB97621.1| Cytosine/adenosine deaminases [Corynebacterium glutamicum ATCC
13032]
Length = 139
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
V +I G ++ HAE+ AL A G TA VTLEP
Sbjct: 13 PVGAVIYAPTGEILATATNRREADRDPTAHAEIIALRRAARRFSDGWRLSDCTAVVTLEP 72
Query: 79 CSHY 82
CS
Sbjct: 73 CSMC 76
>gi|282164321|ref|YP_003356706.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
reductase [Methanocella paludicola SANAE]
gi|282156635|dbj|BAI61723.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine
reductase [Methanocella paludicola SANAE]
Length = 227
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219
G++ + + S+ +H R + DAI+VG T+ D+ LT RL + P
Sbjct: 20 LTLKRGLSSKIIMGLMDMESQRFLHKKRTEFDAIMVGSNTIKIDNSILTNRLVEGRS--P 77
Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKK 277
+R++ + S ++ +I+V+ P A R+K + + + DL+
Sbjct: 78 VRVVPCSDASIPPGSNVL-NHDAPTIIVVSGRASPEKVEAIRQKGAEVMVCGKEAVDLEL 136
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK- 336
++ L RG+ L+VEGG + I ++D IIL + +IG PS + ++
Sbjct: 137 MMEGLTKRGIKRLMVEGGPTLIWLLIQKHMIDHIILIQIPYIIGGDSTPSLVGGPGVDSI 196
Query: 337 ----NFMCVRRDYFGSDVCLEY 354
G+ + EY
Sbjct: 197 GQVVGTDLTDFYKVGNHLITEY 218
>gi|256371548|ref|YP_003109372.1| bifunctional deaminase-reductase domain protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008132|gb|ACU53699.1| bifunctional deaminase-reductase domain protein [Acidimicrobium
ferrooxidans DSM 10331]
Length = 221
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDY 345
LLVEGG V + + RL+D + L + IV G+ P LE V +
Sbjct: 145 HLLVEGGPTVLATLLERRLIDELSLTVAPIVAGQAEAPLVPRILEAPLTATPLALVSTER 204
>gi|303327264|ref|ZP_07357706.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
sp. 3_1_syn3]
gi|302863252|gb|EFL86184.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
sp. 3_1_syn3]
Length = 216
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 33/115 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
M + FM+ S T T V + VKD ++ G
Sbjct: 50 MQRLPWPDYFMNITYLVSERS---TCTRRRVGAVAVKDKRILATGYNGAPAGVPHCLEVG 106
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G +GA Y T PC +
Sbjct: 107 CLREQLGIPSGQRHEICRGLHAEQNVIIQAAVHGINIQGAELYCTTHPCVLCSKM 161
>gi|242279729|ref|YP_002991858.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
gi|242122623|gb|ACS80319.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio salexigens DSM 2638]
Length = 169
Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64
M A+R + + + +G ++ G T HAEV + A
Sbjct: 23 MMDTAIREAFKAR--RHEEVPIGAALFTAEGELLATGNNTPLTQNDPTGHAEVNCIRNAC 80
Query: 65 EEA------RGATAYVTLEPCSHY 82
+ RG VTLEPC
Sbjct: 81 KNLDNYRLPRGTILVVTLEPCIMC 104
>gi|156843603|ref|XP_001644868.1| hypothetical protein Kpol_1065p25 [Vanderwaltozyma polyspora DSM
70294]
gi|156115520|gb|EDO17010.1| hypothetical protein Kpol_1065p25 [Vanderwaltozyma polyspora DSM
70294]
Length = 154
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHA 55
M +D M A + P CLI DG ++GRG H
Sbjct: 1 MSDGKWDKLGMDVAYEEASKG-YEEGGVPIGGCLINNEDGKILGRGHNMRFQKGSATLHG 59
Query: 56 EVQALEEA----GEEARGATAYVTLEPCSHYGRSPPCA 89
E+ LE G+ + T Y TL PC +
Sbjct: 60 EISTLENCGRLEGKVYKNTTLYTTLSPCDMCTGAILMY 97
>gi|48477782|ref|YP_023488.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
gi|48430430|gb|AAT43295.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790]
Length = 185
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ-IVIGEGGIPSPLEEGY 333
+K +L +L G+ S+LVEGGA V F ++L D +Y + +++ G+P
Sbjct: 110 MKNILNVLYEHGIKSILVEGGANVISQFFLNKLYDEFYIYINPGMIL--SGMP-VFNGFE 166
Query: 334 LEKNFMCVRRDYFGSDVCLE 353
N+ ++ G + L+
Sbjct: 167 ASVNYNILK---LGDGILLK 183
>gi|325684667|gb|EGD26821.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 160
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD ++ G + G H
Sbjct: 10 QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66
Query: 56 -------EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 67 CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKH 106
>gi|237717577|ref|ZP_04548058.1| predicted protein [Bacteroides sp. 2_2_4]
gi|229453081|gb|EEO58872.1| predicted protein [Bacteroides sp. 2_2_4]
Length = 232
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 37/106 (34%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
++VT N + + Y + K + + G + ++ G
Sbjct: 102 YFVQYSKNFVLVTSNSEHPAFSINADNLHILYYENLDLHKMMEDLYQKFGCNKITIQTGG 161
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ F+ +L D + + + I++G P+ ++ + + +
Sbjct: 162 TLNGMFLREKLFDYVDIIVAPILVGGSDTPTLIDGESIRTSADLYK 207
>gi|83648079|ref|YP_436514.1| dihydrofolate reductase [Hahella chejuensis KCTC 2396]
gi|83636122|gb|ABC32089.1| Dihydrofolate reductase [Hahella chejuensis KCTC 2396]
Length = 175
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
++ + + GG + SF LVD I+ +++G G P + +
Sbjct: 95 IVAHFRALDYKRVWLVGGGELLASFQEEDLVDEYIISYVPVLLGRGIPLFPPVDACARLD 154
Query: 338 FMCVRRDYFGSDVCLEYIGKNLC 360
F G ++ K LC
Sbjct: 155 FQLAETFSSG---LVQMRYKRLC 174
>gi|224047988|ref|XP_002195924.1| PREDICTED: adenosine deaminase, tRNA-specific 2, TAD2 homolog (S.
cerevisiae) [Taeniopygia guttata]
Length = 172
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 17 FSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARGA 70
++ + G V CL+V +G VIGRG HAE+ A+++ + +
Sbjct: 14 EAKEALEKGEV----PVGCLLVYNGEVIGRGRNEVNETKNATGHAEMVAIDQVLDWCKQH 69
Query: 71 -----------TAYVTLEPCSHY 82
YVT+EPC
Sbjct: 70 KRDYREVFPQLVLYVTVEPCIMC 92
>gi|318042353|ref|ZP_07974309.1| putative cytosine deaminase [Synechococcus sp. CB0101]
Length = 144
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
+ M AA + ++ + ++ + DG ++ RG G P H E Q +
Sbjct: 2 QQLMDAARQEAQQSWMEGGI--PIGAVLAREDGTIVARGHNQRVQNGDPTSHGETQCIRN 59
Query: 63 AGEEA--RGATAYVTLEPCSHY 82
AG R T TL PC
Sbjct: 60 AGRRRDWRDLTLVTTLSPCPMC 81
>gi|311742889|ref|ZP_07716697.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
gi|311313569|gb|EFQ83478.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
Length = 185
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LV GG +A + + LVD I L+ +V+G +P + F S
Sbjct: 120 YVLV-GGPHLAAQALEAGLVDEIELFVWPVVLGG---RNPALPAGWSAELDLLEHQRFPS 175
Query: 349 D-VCLEYIGK 357
V L Y +
Sbjct: 176 GAVRLHYRVR 185
>gi|107103002|ref|ZP_01366920.1| hypothetical protein PaerPA_01004071 [Pseudomonas aeruginosa PACS2]
gi|254236421|ref|ZP_04929744.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126168352|gb|EAZ53863.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 180
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ +
Sbjct: 103 EQGCRRVWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG---IPLFAGGRERRLQLLE 158
>gi|302407882|ref|XP_003001776.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
[Verticillium albo-atrum VaMs.102]
gi|261359497|gb|EEY21925.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase
[Verticillium albo-atrum VaMs.102]
Length = 177
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVT-AYGGCPHAEVQALEE 62
++ AL + STN SV ++V ++ G T G HAE +
Sbjct: 17 DHKAYLQYALSLAARSPPK-STNYSVGAVLVNPNTNAIVSTGYTLELEGNTHAEQCCFMK 75
Query: 63 --AGEEARG---AT--------AYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDP 107
A AT Y T+EPCS G P + + + V
Sbjct: 76 FAAAHSVTEEELATAVQSPPLILYATMEPCSERLSGNLPCVKRILRLKHLITAVYVGVQE 135
Query: 108 DVRV--SGRGLQWLSQKGIIVDR 128
+ G L GI
Sbjct: 136 PEKFVSDNTGRGALQAAGIEFVH 158
>gi|226303819|ref|YP_002763777.1| tRNA-specific adenosine deaminase [Rhodococcus erythropolis PR4]
gi|226182934|dbj|BAH31038.1| putative tRNA-specific adenosine deaminase [Rhodococcus
erythropolis PR4]
Length = 153
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHA 55
M + + D R + AA+ +R + + V ++ DG+ + R A HA
Sbjct: 1 MTL-ADDQRMIRAAIVAARSA---SDADVPVGAVVFDADGVEVARAANAREAASDPTAHA 56
Query: 56 EVQALEEA------GEEARGATAYVTLEPCSHY 82
E+ AL A G GAT VTLEPC+
Sbjct: 57 EILALRAAAKIYGDGWRLEGATLAVTLEPCTMC 89
>gi|49081718|gb|AAT50259.1| PA3469 [synthetic construct]
Length = 181
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ +
Sbjct: 103 EQGCRRVWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG---IPLFAGGRERRLQLLE 158
>gi|15598665|ref|NP_252159.1| hypothetical protein PA3469 [Pseudomonas aeruginosa PAO1]
gi|218890283|ref|YP_002439147.1| putative dihydrofolate reductase [Pseudomonas aeruginosa LESB58]
gi|254242155|ref|ZP_04935477.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|9949613|gb|AAG06857.1|AE004768_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126195533|gb|EAZ59596.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218770506|emb|CAW26271.1| putative dihydrofolate reductase [Pseudomonas aeruginosa LESB58]
Length = 180
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ +
Sbjct: 103 EQGCRRVWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG---IPLFAGGRERRLQLLE 158
>gi|291303426|ref|YP_003514704.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia
nassauensis DSM 44728]
gi|290572646|gb|ADD45611.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia
nassauensis DSM 44728]
Length = 144
Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AL + + ++ + ++ DGI + HAE+ AL A
Sbjct: 1 MRRALAVAA----ESGSDVPIGAVVYSPDGIELAAAHNLREATGDPTAHAELVALRRAAE 56
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G VT+EPC+
Sbjct: 57 VHGDGWRLSDCVLVVTVEPCTMC 79
>gi|282866566|ref|ZP_06275609.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
ACTE]
gi|282558613|gb|EFB64172.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
ACTE]
Length = 260
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVR 342
RG T LL EGG + F+ + ++D + L S ++ G + + + F
Sbjct: 187 RGHTRLLTEGGPRLLGQFVAADVLDELCLTVSPMLTAGGAQRIATGPGVTVPERFSLTS 245
>gi|297191291|ref|ZP_06908689.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|197718422|gb|EDY62330.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 273
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-IGEGGIPSPLEEGYLEKNFMCV 341
RG+ LL EGG + F + ++D + L S + +G+ + F
Sbjct: 198 AERGLVRLLTEGGPRMLGQFAAAGVLDELCLTVSPTMTVGDAQRIAGGPVLADPARFALD 257
Query: 342 RRDYFGSDVCLEYI 355
+ Y
Sbjct: 258 SVLEEAGFLFTRYR 271
>gi|330507120|ref|YP_004383548.1| riboflavin biosynthesis protein RibD C- domain-containing protein
[Methanosaeta concilii GP-6]
gi|328927928|gb|AEB67730.1| riboflavin biosynthesis protein RibD C- domain protein
[Methanosaeta concilii GP-6]
Length = 231
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 35/153 (22%), Gaps = 19/153 (12%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
RI + + + +D I L
Sbjct: 83 RIRTWHYLRTLPYWRHFVALCSKST----PDDYLEYLKQRHIDCIVTGEDHVDLRTALEE 138
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----- 335
+ V + + G + + LV+ + + ++G S L
Sbjct: 139 LCSRYAVRVVRADAGGTLNGLLLRQGLVNEVSVLIYPSLVGGETTSSIFRAPDLPAAADG 198
Query: 336 ---------KNFMCVRRDYFGSDV-CLEYIGKN 358
+ ++ + DV L Y +
Sbjct: 199 APGQGAEGTISLQLMKTEKLKGDVMWLRYEVRR 231
>gi|23012876|ref|ZP_00052863.1| COG2131: Deoxycytidylate deaminase [Magnetospirillum
magnetotacticum MS-1]
Length = 140
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 25/103 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG-------- 51
M ++ +D FM A + + V + V DG + G
Sbjct: 1 MSMNWYD-YFMGFARHAASKSK---DPSTQVGAVAVGPDGEIRATGYNGLPRGVEDKPER 56
Query: 52 ---------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G +G T YVT PCS
Sbjct: 57 MERPAKYLWTSHAEENLVAHAARVGVSLKGCTVYVTHYPCSRC 99
>gi|325528019|gb|EGD05243.1| cytidine/deoxycytidylate deaminase [Burkholderia sp. TJI49]
Length = 155
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65
F+ + + +V A +IV+DG ++ HAE+ A+ +A
Sbjct: 3 FVKRTIDLAMKNVEEGGR--PFATVIVRDGEIVAESPNLVAQTRDPTAHAEILAVRDACR 60
Query: 66 E-----ARGATAYVTLEPCSHY 82
Y+ PC
Sbjct: 61 RLGTEHLTDCEIYILASPCPMC 82
>gi|167625318|ref|YP_001675612.1| deaminase-reductase domain-containing protein [Shewanella
halifaxensis HAW-EB4]
gi|167355340|gb|ABZ77953.1| bifunctional deaminase-reductase domain protein [Shewanella
halifaxensis HAW-EB4]
Length = 184
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L +G +L ++GG + F+ L+D +I+ +++G GIP E
Sbjct: 105 HIVQQLNSKGYQNLYIDGGKTIQG-FLQRDLIDELIITTIPVLLGG-GIPLF-GELAAPL 161
Query: 337 NFMCVRRDYF 346
F V+ +
Sbjct: 162 KFKHVKAERL 171
>gi|152987783|ref|YP_001347042.1| hypothetical protein PSPA7_1658 [Pseudomonas aeruginosa PA7]
gi|150962941|gb|ABR84966.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 180
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ + +
Sbjct: 103 EQGCRRVWLAGGGSLAGSCLGAGLLDEVIVSVVPQLLGAG---IPLFAGGRERRLRLLEQ 159
Query: 344 DYF 346
+
Sbjct: 160 HSY 162
>gi|306836256|ref|ZP_07469238.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|304567848|gb|EFM43431.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length = 232
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 12/192 (6%)
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
+ LR +D + VG TV + + + K
Sbjct: 38 MGNDTDAQLFQTLRGWADVVFVGGQTVR-SEDYSGVEQHSPDSRPAPIAVPTQSLKFDPS 96
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-----IIYCDCRDLKKLLTILVGRGVT 288
SK + AP+ +V +A R +I +I ++ L +L RG
Sbjct: 97 SKFLTDFTTAPLFLVPHAALQQADVAARVPSIEATGAEVIDAGEGTMQDYLRVLRERGFQ 156
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+L EGG + ++ +D + L + G+ P+ + + + + +
Sbjct: 157 RILCEGGPGMLGQLVHIDAIDQMYLTLDPHL--STGVEKPVATFHGTHSHRRMHLENIAA 214
Query: 349 D----VCLEYIG 356
D V L Y
Sbjct: 215 DTDSTVFLRYSR 226
>gi|256826526|ref|YP_003150485.1| deoxycytidylate deaminase [Cryptobacterium curtum DSM 15641]
gi|256582669|gb|ACU93803.1| deoxycytidylate deaminase [Cryptobacterium curtum DSM 15641]
Length = 156
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 35/107 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A+ S+ + V I + ++ G G P
Sbjct: 10 TWDQFFMGVAIAASQRSK---DPHTQVGACIADTNHRILSVGY---NGTPSALNDDDFPW 63
Query: 54 ---------------HAEVQALEE---AGEEARGATAYVTLEPCSHY 82
HAE A+ + ++ GA+AYVTL PC
Sbjct: 64 GASDDPLHDKHSYVVHAEANAVLNYRGSLKDMDGASAYVTLFPCHEC 110
>gi|328943526|ref|ZP_08240991.1| tRNA-specific adenosine deaminase [Atopobium vaginae DSM 15829]
gi|327491495|gb|EGF23269.1| tRNA-specific adenosine deaminase [Atopobium vaginae DSM 15829]
Length = 237
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
+ ++V + ++ ++ HAE A+ +A ++ YVTLEPC
Sbjct: 110 PIGAVVVCNNTILSAAHNLRQHSHNPSDHAEFIAMLQAAKKLDSWHLERCCVYVTLEPCL 169
Query: 81 HY 82
Sbjct: 170 MC 171
>gi|251795501|ref|YP_003010232.1| dihydrofolate reductase-like protein [Paenibacillus sp. JDR-2]
gi|247543127|gb|ACT00146.1| Dihydrofolate reductase-like protein [Paenibacillus sp. JDR-2]
Length = 169
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L +G + L+ GGA + +SF+N LVD +I + ++ G+G ++ YL K+
Sbjct: 90 NHLRQKGHQTALISGGAEIHNSFLNQNLVDEVIFNVAPVMEGKGLNLLIDKDNYLYKHVE 149
Query: 340 CVRRDYFGSDVC-LEY 354
+ G + L Y
Sbjct: 150 LLNCQPLGGGIVQLHY 165
>gi|154305221|ref|XP_001553013.1| hypothetical protein BC1G_08905 [Botryotinia fuckeliana B05.10]
gi|150853647|gb|EDN28839.1| hypothetical protein BC1G_08905 [Botryotinia fuckeliana B05.10]
Length = 243
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT----AYGGCPHAEVQALEE 62
M AL + + T+ P V C++V V+ RG+ +Y G HAE A++E
Sbjct: 1 MREALAMANLAL-STNETP-VGCVLVDPTLKKVVARGMNATNRSYNGTRHAEFIAIDE 56
>gi|309775605|ref|ZP_07670605.1| RibD domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308916699|gb|EFP62439.1| RibD domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 226
Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 35/98 (35%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
A I+VT N+ + Y + L + G + ++ G
Sbjct: 96 YFCARAKQCILVTANNKHPAFQIQEDNLHILYYDTIKLADVLSQLHTDFGCERITIQTGG 155
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ F+ +L+D + L + ++IG S ++ +
Sbjct: 156 TLNSIFLREKLLDYVDLVVAPVLIGGKQTASVIDGEAI 193
>gi|302691412|ref|XP_003035385.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
gi|300109081|gb|EFJ00483.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8]
Length = 163
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 52/159 (32%), Gaps = 37/159 (23%)
Query: 11 MSAALRFSRWHVGLTSTNP---SVACLIVKDG------IVIGRGVTAY-GGCPHAEVQAL 60
M AL + P V C++ V+ G + G HAE AL
Sbjct: 1 MRLALAEAAR----CEPTPTAFCVGCVLAYRDPSNSEPAVLSTGYSRELPGNTHAEANAL 56
Query: 61 EEAG----------------------EEARGATAYVTLEPC-SHYGRSPPCAQFIIECGI 97
+ + R Y TLEPC PCA +I G+
Sbjct: 57 TKLCALTPAEVAARLPSFDPSKASVDDILRQVDVYTTLEPCSIRTSGLAPCADALIAAGV 116
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
RR + V +PD V G + L G+ + + E +
Sbjct: 117 RRCFIGVGEPDDFVQCEGARKLKDAGVEIVWLKGMEEEC 155
>gi|241950233|ref|XP_002417839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative; htp
reductase, putative [Candida dubliniensis CD36]
gi|223641177|emb|CAX45554.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
[Candida dubliniensis CD36]
Length = 304
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325
+ K+L L G+ S+++EGGA + + + + +L+DSII+ + + +G G+
Sbjct: 217 SINWVKILQKLYQLGLKSIMIEGGAKIINDLLSINDYKLIDSIIITIAPVFLGCNGV 273
>gi|218437707|ref|YP_002376036.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
gi|218170435|gb|ACK69168.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424]
Length = 185
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
S+D F+ A + L V +IVKD V+ G + G H
Sbjct: 10 SWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPSGSVH 57
>gi|333025914|ref|ZP_08453978.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
gi|332745766|gb|EGJ76207.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071]
Length = 163
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G + R HAEV AL A G T VTLEPC
Sbjct: 38 PVGAVVLDASGTELARARNEREATHDPTAHAEVLALRRAAAVRGEWRLTGCTLVVTLEPC 97
Query: 80 SHY 82
Sbjct: 98 PMC 100
>gi|318062198|ref|ZP_07980919.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actG]
gi|318079391|ref|ZP_07986723.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actF]
Length = 163
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G + R HAEV AL A G T VTLEPC
Sbjct: 38 PVGAVVLDASGTELARARNEREATHDPTAHAEVLALRRAAAVRGEWRLTGCTLVVTLEPC 97
Query: 80 SHY 82
Sbjct: 98 PMC 100
>gi|124262738|ref|YP_001023208.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
PM1]
gi|124266394|ref|YP_001020398.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
PM1]
gi|124259169|gb|ABM94163.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
PM1]
gi|124261984|gb|ABM96973.1| deoxycytidylate deaminase-like protein [Methylibium petroleiphilum
PM1]
Length = 187
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 43/154 (27%), Gaps = 40/154 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------- 53
P+ + + FM A+ + N I D ++G G G P
Sbjct: 5 PLIDWHSMFMGVAMLAAARSKDARKRN---GACIASADNKILGVGY---NGLPRGCDDDD 58
Query: 54 --------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFI 92
HAEV A+ G+T Y T PC I
Sbjct: 59 PSYWADVDDDPVQSRHSYIVHAEVNAILNCVVLPLTGSTIYTTQFPC-----PRCVQSII 113
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
R V + V ++ + L GI V
Sbjct: 114 QVGIKRVVFLDKKTHQVALNSASDKMLVDAGIEV 147
>gi|168178781|ref|ZP_02613445.1| guanine deaminase [Clostridium botulinum NCTC 2916]
gi|182671437|gb|EDT83411.1| guanine deaminase [Clostridium botulinum NCTC 2916]
Length = 157
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVK G VI G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKAGQVIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|118591858|ref|ZP_01549253.1| putative deaminase [Stappia aggregata IAM 12614]
gi|118435501|gb|EAV42147.1| putative deaminase [Stappia aggregata IAM 12614]
Length = 155
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 34 LIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
++ ++G ++GRGV + HAEV+A+ +A GAT + EPC+
Sbjct: 23 VVDRNGEILGRGVNRVREYHDPTAHAEVEAIRDACRTHGTVHLHGATLLASGEPCAMC 80
>gi|114045649|ref|YP_736199.1| CMP/dCMP deaminase, zinc-binding protein [Shewanella sp. MR-7]
gi|113887091|gb|ABI41142.1| CMP/dCMP deaminase, zinc-binding protein [Shewanella sp. MR-7]
Length = 157
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG----CPHAEVQALEEAG----- 64
L ++ V T + +IV + G ++ GV HAE+QA+ A
Sbjct: 13 LALAQKEVEGTGL--PFSAVIVDESGRIVAEGVNRVQALHDCTAHAEIQAIRMATLLLKQ 70
Query: 65 EEARGATAYVTLEPCSHY 82
G T + EPC
Sbjct: 71 VSLEGMTLIASGEPCGFC 88
>gi|284034289|ref|YP_003384220.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283813582|gb|ADB35421.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 186
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+L+ GG+ +A + L+D + +++G G P EG + V
Sbjct: 117 DILLSGGSTLAAALTAEGLIDEYHVVVHPVLLGGGKRLFP--EGQSRRPLRLVESRLLDE 174
>gi|224049770|ref|XP_002190430.1| PREDICTED: dCMP deaminase [Taeniopygia guttata]
Length = 159
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 34/100 (34%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------------- 53
M+ A ++ + V IV + ++G G G P
Sbjct: 1 MAVAFLSAQRSK---DPSSQVGACIVNSENKIVGIGY---NGMPNGCSDDVLPWTRTGAN 54
Query: 54 ----------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + +G + YV L PC+
Sbjct: 55 RLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNEC 94
>gi|225378211|ref|ZP_03755432.1| hypothetical protein ROSEINA2194_03871 [Roseburia inulinivorans DSM
16841]
gi|225209942|gb|EEG92296.1| hypothetical protein ROSEINA2194_03871 [Roseburia inulinivorans DSM
16841]
Length = 226
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 11/161 (6%)
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
++ + +P+ +L + L+ +++T N D
Sbjct: 63 QEKMGVNQKPYPDKTPVSFVLLDNNHLTEHGVTYFCKKSQVFVLITSNKDHPAYNIKENN 122
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
I L + G L ++ G V F+ +L D I + + ++IG
Sbjct: 123 LHIIFQEKLSLKDALRELKSSYGCNKLTIQSGGTVNGLFLREKLFDYIDVVVAPVLIGGK 182
Query: 324 GIPSPLEEGYLEKN--------FMCVRRDYFGSD--VCLEY 354
S ++ + + +D + + Y
Sbjct: 183 ETSSLIDGSSILSENELSELGVLKLIDCTVL-NDSYIRVRY 222
>gi|239944749|ref|ZP_04696686.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
Length = 199
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 3/130 (2%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
D K V + L G
Sbjct: 71 RGTWDRDWKGWWGDNPPYHAPVFVLTHHPRDPQPMDGGTTFHFVTDGIESALRRAREAAG 130
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ V GGA + ++ + L+D + L+ +G G L +G + V
Sbjct: 131 DRDVSVHGGARTVNQYLAAGLIDELRLHIVPFTLGAGTR---LFDGVPSLDLELVETRAA 187
Query: 347 GSDVCLEYIG 356
+ + Y
Sbjct: 188 DTVTHVTYRV 197
>gi|207724908|ref|YP_002255305.1| hypothetical protein RSMK03421 [Ralstonia solanacearum MolK2]
gi|206590134|emb|CAQ37095.1| 3.5.4.25 protein [Ralstonia solanacearum MolK2]
Length = 197
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
P+++ + L ++ + +++ L + I
Sbjct: 30 PPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYAGLACVIGLDGPISA 89
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--EGY 333
+ + +L RGV L VEGG V F++ + D L + +G G +
Sbjct: 90 RGIANVLQRRGVQHLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVGRAGASRLQLWHDRM 149
Query: 334 LEKNFMCV--RRDYFGSDVCLEY 354
+ +F V R G ++Y
Sbjct: 150 WDLSFRLVAARVRLLGGTTVVDY 172
>gi|116334097|ref|YP_795624.1| dihydrofolate reductase [Lactobacillus brevis ATCC 367]
gi|116099444|gb|ABJ64593.1| Dihydrofolate reductase [Lactobacillus brevis ATCC 367]
Length = 177
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 32/114 (28%), Gaps = 2/114 (1%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ L + L + + ++ + GG A+ I
Sbjct: 65 TLNPYNPTMHSYVLTQCPYQDTATITFTSEDLLGLARRLKQQSGNVWIIGGQAILTPLIA 124
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
L+D + L + + +G+G + +F G L Y +
Sbjct: 125 DDLIDELYLQIAPVTLGQG--KRLFGDLNRRHHFHLQSVHPLGPLAELVYEKEE 176
>gi|25027302|ref|NP_737356.1| hypothetical protein CE0746 [Corynebacterium efficiens YS-314]
gi|259506559|ref|ZP_05749461.1| dihydrofolate reductase [Corynebacterium efficiens YS-314]
gi|23492583|dbj|BAC17556.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165979|gb|EEW50533.1| dihydrofolate reductase [Corynebacterium efficiens YS-314]
Length = 181
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V GG +A F+++ +D IIL + + + G P+ L V G
Sbjct: 113 DIWVMGGGDLAGQFLDTGALDRIILTIAPVFL-PSGRPT-LPRRLESDRLTLVGTRPLGQ 170
Query: 349 DVCLEY 354
V + Y
Sbjct: 171 FVEVTY 176
>gi|331002521|ref|ZP_08326039.1| hypothetical protein HMPREF0491_00901 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410337|gb|EGG89771.1| hypothetical protein HMPREF0491_00901 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 164
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 30/105 (28%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----------- 52
++D F+ A +R + V IV D ++ G +
Sbjct: 10 NWDEYFIGVAKLSARRSK---DPSTQVGACIVSEDNKILSMGYNGFPRGCSDEDFPWGKE 66
Query: 53 --------------PHAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G G+ YVTL PC+
Sbjct: 67 YEITDPYNAKYLYSTHSELNAILNYRGGSLEGSKIYVTLFPCNEC 111
>gi|239991214|ref|ZP_04711878.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
11379]
gi|291448211|ref|ZP_06587601.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
gi|291351158|gb|EFE78062.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
Length = 206
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 33/141 (23%), Gaps = 3/141 (2%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ D K V +
Sbjct: 67 FIMGRNMFGPVRGTWDRDWKGWWGDNPPYHAPVFVLTHHPRDPQPMDGGTTFHFVTDGIE 126
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L G + V GGA + ++ + L+D + L+ +G G L +G
Sbjct: 127 SALRRAREAAGDRDVSVHGGARTVNQYLAAGLIDELRLHIVPFTLGAGTR---LFDGVPS 183
Query: 336 KNFMCVRRDYFGSDVCLEYIG 356
+ V + + Y
Sbjct: 184 LDLELVETRAADTVTHVTYRV 204
>gi|223997732|ref|XP_002288539.1| hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana
CCMP1335]
gi|220975647|gb|EED93975.1| hypothetical protein THAPSDRAFT_268551 [Thalassiosira pseudonana
CCMP1335]
Length = 180
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 28/146 (19%)
Query: 6 FDARFMSAALRFSRWHV--GLTSTNPSVACLI---VKDGIVIGRGVTA----YGGCPHAE 56
+ FM AL +R + G V C++ +++ G HAE
Sbjct: 1 MEKYFMRQALCVARTALDIGEV----PVGCIVPYMASHSVIVSHGANQVNATRDATRHAE 56
Query: 57 VQALE------EAGEEAR-------GATAYVTLEPCSHYGR--SPPCAQFIIECGIRRVV 101
+ A++ + ++ + YVT EPC S +
Sbjct: 57 IVAIDRMLTKGRSSDQLKLPPEIFANCDLYVTCEPCIMCAAALSVMGIGRVFFGCRNDRF 116
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVD 127
LQ G +
Sbjct: 117 GGCGSILHLHKEDTLQSSKHHGFTIH 142
>gi|294787884|ref|ZP_06753128.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
gi|294484177|gb|EFG31860.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453]
Length = 240
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE-----EARGATAYVTLEPCS 80
V +++ G +I + HAE+Q +E+AG+ YVTLEPC+
Sbjct: 115 PVGAILLHQGKIIAQAHNLCVAGHSVCQHAEIQVIEQAGKILQNYRLDECDLYVTLEPCA 174
Query: 81 HY 82
Sbjct: 175 MC 176
>gi|325479743|gb|EGC82833.1| putative ComE operon protein 2 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 146
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 26/98 (26%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT-AYGGCPH----------- 54
FM A + T V C+IV + ++ G + G PH
Sbjct: 10 EYFMKLAKNVAMRG---TCDRAYVGCVIVNEENRIVTTGYNGSISGNPHCDEVGHTMRDG 66
Query: 55 -------AEVQAL---EEAGEEARGATAYVTLEPCSHY 82
AE+ A+ + G + YVT PC +
Sbjct: 67 HCIATIHAEMNAILYCAKEGIALKDTICYVTHFPCLNC 104
>gi|313108829|ref|ZP_07794814.1| putative dihydrofolate reductase [Pseudomonas aeruginosa 39016]
gi|310881316|gb|EFQ39910.1| putative dihydrofolate reductase [Pseudomonas aeruginosa 39016]
Length = 180
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ +
Sbjct: 103 EQGCRRIWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG---IPLFAGGRERRLQLLE 158
>gi|310824651|ref|YP_003957009.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
gi|309397723|gb|ADO75182.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca
DW4/3-1]
Length = 189
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
L+ G +A S++ L+D + +Y +V+G G P + + FG+ V
Sbjct: 121 LIVAGPTLAASYLKQGLIDEVSIYYIPVVVGG-GTPMF-QGIDATVRLERLDARAFGNGV 178
Query: 351 -CLEYIGKN 358
+ Y +
Sbjct: 179 TFVRYAVRK 187
>gi|269126069|ref|YP_003299439.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
DSM 43183]
gi|268311027|gb|ACY97401.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata
DSM 43183]
Length = 151
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-GGCPHAEVQALEEA 63
D ++ A +R + T SV +IV DG + RG + HAE +AL +
Sbjct: 5 QDRHWLEVACDLARR-CPPSQTAFSVGAVIVGADGTELARGFSRETDPKAHAEEEALAKL 63
Query: 64 GEEARGA-----TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A T Y +LEPC R PCA+ I E GI RVV +P + V G G Q
Sbjct: 64 RAAGAAADLGGATIYSSLEPCGRRLSRPRPCARLIAEAGIGRVVYAWREPVLFVEGGGEQ 123
Query: 118 WLSQKGIIV 126
L GI V
Sbjct: 124 VLRAAGIEV 132
>gi|161528455|ref|YP_001582281.1| CMP/dCMP deaminase zinc-binding [Nitrosopumilus maritimus SCM1]
gi|160339756|gb|ABX12843.1| CMP/dCMP deaminase zinc-binding [Nitrosopumilus maritimus SCM1]
Length = 200
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 47/121 (38%)
Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
++D FM A ++ +T V +IV++ + G G P
Sbjct: 35 NWDEYFMLQA-ELAKLRSNCITR---QVGAVIVRNHRQLATGY---NGTPPGIKNCFDGG 87
Query: 54 ------------------------HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGR 84
HAE A+ GA Y T PC +
Sbjct: 88 CKRCQLRMEGKIESGASLDRCLCNHAEANAIMHCAILGIEAGIEGAVLYTTFVPCLECTK 147
Query: 85 S 85
Sbjct: 148 M 148
>gi|67900884|ref|XP_680698.1| hypothetical protein AN7429.2 [Aspergillus nidulans FGSC A4]
gi|40742819|gb|EAA62009.1| hypothetical protein AN7429.2 [Aspergillus nidulans FGSC A4]
gi|259483732|tpe|CBF79364.1| TPA: deoxycytidylate deaminase, putative (AFU_orthologue;
AFUA_2G06240) [Aspergillus nidulans FGSC A4]
Length = 314
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
++D FM A ++ + V C++V++ VI G G P
Sbjct: 233 NWDQYFMELASLAAQRSNCMKR---RVGCVLVRERRVISTGY---NGTP 275
>gi|116051489|ref|YP_789678.1| hypothetical protein PA14_19210 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296388013|ref|ZP_06877488.1| hypothetical protein PaerPAb_07654 [Pseudomonas aeruginosa PAb1]
gi|115586710|gb|ABJ12725.1| putative dihydrofolate reductase [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 180
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+G + + GG ++A S + + L+D +I+ ++G G PL G E+ +
Sbjct: 103 EQGCRRIWLAGGGSLAGSCLAAGLLDEVIVSVIPQLLGAG---IPLFAGGRERRLQLLE 158
>gi|325125125|gb|ADY84455.1| dCMP deaminase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 160
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD ++ G + G H
Sbjct: 10 QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66
Query: 56 -------EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 67 CVRTIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYNCTKH 106
>gi|242219302|ref|XP_002475432.1| predicted protein [Postia placenta Mad-698-R]
gi|220725368|gb|EED79358.1| predicted protein [Postia placenta Mad-698-R]
Length = 137
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 35/101 (34%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53
M A S + V ++V++ ++ G G P
Sbjct: 1 MQLAELASERSNCMKR---RVGAILVRNKRILATGY---NGTPRGLTNCNEGGCTRCNSG 54
Query: 54 ----------HAEVQALEEAGEE--ARGATAYVTLEPCSHY 82
HAE AL EAG E GA Y PC
Sbjct: 55 KEASDECVCLHAEENALLEAGRERVGDGAVLYCNTCPCLKC 95
>gi|326383561|ref|ZP_08205247.1| hypothetical protein SCNU_11520 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197645|gb|EGD54833.1| hypothetical protein SCNU_11520 [Gordonia neofelifaecis NRRL
B-59395]
Length = 201
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G A + I + +VD + ++G G P + V FG L Y
Sbjct: 142 GPTTAAAAIRAGMVDDYRFFVVPKIVGGGLRALP---DDARLDLRLVEHRTFGDTAYLHY 198
Query: 355 I 355
Sbjct: 199 R 199
>gi|6822155|emb|CAB71026.1| riboflavin-specific deaminase / reductase [Helicobacter pylori]
Length = 344
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 64/319 (20%), Positives = 107/319 (33%), Gaps = 38/319 (11%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLDILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + G L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGFARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R G
Sbjct: 185 RMNGDYYHG---KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCGSFYQHKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + + +A V +D L L I + L+ +
Sbjct: 242 PNIAILSKRPINPHSKVFSAPNRLVNTF--HDPKDLPLEKGFNFIEGGWELFESLRDKID 299
Query: 281 ILVGRGVTSLLVEGGAAVA 299
+L+ S++ E +A
Sbjct: 300 VLLLHSHASMISEAFNTLA 318
>gi|320007797|gb|ADW02647.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 257
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRR 343
RG+ LL EGG + F+ + ++D + L S ++ G+ + + + F V
Sbjct: 184 RGLGRLLTEGGPRLLGQFVAAGVLDELCLTLSPLLTAGDAQRIAGGPAVPVPERFALVSL 243
Query: 344 DYFGSDVCLEY 354
+ Y
Sbjct: 244 LEEAGFLFTRY 254
>gi|104773493|ref|YP_618473.1| putative dCMP deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103422574|emb|CAI97177.1| Putative dCMP deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 160
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD ++ G + G H
Sbjct: 10 QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 66
Query: 56 -------EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 67 CVRTIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYNCTKH 106
>gi|330813628|ref|YP_004357867.1| tRNA-specific adenosine-34 deaminase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486723|gb|AEA81128.1| tRNA-specific adenosine-34 deaminase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 129
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 30 SVACLIV--KDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
V+ +IV K +I R HAE+ + +A + G Y +LEP
Sbjct: 2 PVSAIIVDPKSKKIIARAHNLSIRNKDPLAHAEILVIRKALKFLNKKRLDGMDIYCSLEP 61
Query: 79 CSHY 82
C
Sbjct: 62 CVMC 65
>gi|254387285|ref|ZP_05002544.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces sp.
Mg1]
gi|194346089|gb|EDX27055.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces sp.
Mg1]
Length = 262
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRR 343
RG+ L EGG + F+ + +D + L S ++ G+ S +
Sbjct: 189 RGMRRQLTEGGPRLLGQFVAADALDELCLTISPMLTAGDAQRISGGPSVAVPHRLAAASV 248
Query: 344 DYFGSDVCLEYIG 356
+ Y
Sbjct: 249 LEEAGFLFTSYRR 261
>gi|15604662|ref|NP_221180.1| hypothetical protein RP831 [Rickettsia prowazekii str. Madrid E]
gi|6226400|sp|Q9ZCC6|Y831_RICPR RecName: Full=Uncharacterized deaminase RP831
gi|3861357|emb|CAA15256.1| unknown [Rickettsia prowazekii]
Length = 148
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL+ +R N V +IV + +I HAE+ A+ A
Sbjct: 1 MEQALKQARLAF---DKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTA 57
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 58 CNLISSKNLNDYDIYVTLEPCAMC 81
>gi|291087360|ref|ZP_06346224.2| riboflavin biosynthesis protein RibD protein [Clostridium sp.
M62/1]
gi|291075486|gb|EFE12850.1| riboflavin biosynthesis protein RibD protein [Clostridium sp.
M62/1]
Length = 245
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
L + + L+V GG + SF + ++D + L + + G S E
Sbjct: 156 CPLLLQKLRNLFDIEKLMVAGGGIINWSFASEGIIDELSLVIAPVADGGTDSVSIFEHSA 215
Query: 334 LEKN-----FMCVRRDYFGSD-VCLEYIG 356
D + L Y
Sbjct: 216 FSPERIPVALHLKEAKALNGDALWLRYCR 244
>gi|298707242|emb|CBJ25869.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 408
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ RG+ +LVEGG +VA F++ RLVD I+ R+ + + V
Sbjct: 321 LERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRRAGLELVG 380
Query: 343 RDYFGSD 349
+G D
Sbjct: 381 CTKWGDD 387
>gi|153941176|ref|YP_001390638.1| guanine deaminase [Clostridium botulinum F str. Langeland]
gi|152937072|gb|ABS42570.1| guanine deaminase [Clostridium botulinum F str. Langeland]
gi|295318715|gb|ADF99092.1| guanine deaminase [Clostridium botulinum F str. 230613]
Length = 157
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
IVKDG +I G H EV + +A ++ G Y T EPC
Sbjct: 25 PFGSAIVKDGEMIAVAHNTVVGDNDPTAHGEVNVIRKACKKLNTFDLSGCELYTTSEPCP 84
Query: 81 HY 82
Sbjct: 85 MC 86
>gi|73852493|ref|YP_293777.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
gi|72415209|emb|CAI65446.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86]
Length = 173
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 53/161 (32%), Gaps = 43/161 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCP--------- 53
S+D FM A + + V I+ K +I G G P
Sbjct: 19 SWDQYFMGVAKLSAMRSK---DPSTQVGSCIIESKTNKIISIGY---NGMPRGCNDDDFP 72
Query: 54 -------------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
H+E A+ A G G T YVTL PC C + II
Sbjct: 73 WGKKEKNSNILDTKYPFVVHSEANAILNANGTSVNGCTMYVTLFPC------NECTKLII 126
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134
+ GI +V D D+ L+ L G+ + + ++
Sbjct: 127 QSGICEIVYLDDYNDITTKTASLRMLQSAGVTIRKYKQTYR 167
>gi|218675888|ref|YP_002394707.1| putative dihydrofolate reductase [Vibrio splendidus LGP32]
gi|218324156|emb|CAV25362.1| putative dihydrofolate reductase [Vibrio splendidus LGP32]
Length = 188
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L +G+ +L ++GG + +F+ L+D +I+ +V+G G +
Sbjct: 109 QIVADLNNKGLKNLYIDGGITI-QNFLKEDLIDELIISTIPVVLGGG--SPLFGDLVSPV 165
Query: 337 NFMCVRRDYFGSDVC-LEYIGKN 358
+F + ++ Y+ K
Sbjct: 166 DFTLKGVTTYLDEIVQTHYLRKR 188
>gi|81300665|ref|YP_400873.1| tRNA-adenosine deaminase [Synechococcus elongatus PCC 7942]
gi|81169546|gb|ABB57886.1| tRNA-adenosine deaminase [Synechococcus elongatus PCC 7942]
Length = 168
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
R+M+ A + G P + +IV G ++ G C HAE+ A+
Sbjct: 15 ETHHRWMTIAYEQAVIA-GTAGEIP-IGAVIVHQGHLLATGQNRRERDRDPCGHAEIIAI 72
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A YVTLEPC
Sbjct: 73 RAAAARIGDWRLSDCQLYVTLEPCPMC 99
>gi|298246912|ref|ZP_06970717.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297549571|gb|EFH83437.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 196
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/178 (8%), Positives = 50/178 (28%), Gaps = 5/178 (2%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ A+ + + + + + + + +
Sbjct: 18 DENGQTDWMVWNWGEEWNWDAELRRYHNDVAASMDCVLLSRKMAQEGFIHYWATVAEKHD 77
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG---VTSLLVEGGAAV 298
+ + + + N++ + L + +++ GGA
Sbjct: 78 NPQSGFARKITEAQKVVFTKTLNMSEWHNTVLAKGDLAEEVNKLKNISGRNIITYGGATF 137
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
A S + + LVD + L + ++G G+P ++ + + + + +
Sbjct: 138 ASSLLQAGLVDELHLIINPSILGS-GLP-IFDKIRGAQRLSLIHSASYKGGIIVSQYK 193
>gi|308177721|ref|YP_003917127.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307745184|emb|CBT76156.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 181
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V GGA +A +F+ + +D ++L V+GEG L + + +
Sbjct: 112 GAGDVWVVGGADLAGAFVEAEALDEVLLVTVPEVLGEGAS---LFGRGISTQLAALEIEQ 168
Query: 346 FGSDVCL-EY 354
G+D+ L Y
Sbjct: 169 LGTDIFLARY 178
>gi|326403669|ref|YP_004283751.1| tRNA-specific adenosine deaminase [Acidiphilium multivorum
AIU301]
gi|325050531|dbj|BAJ80869.1| tRNA-specific adenosine deaminase [Acidiphilium multivorum
AIU301]
Length = 154
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V ++V G V+ HAE+ AL A G+ +G +VTLEPC
Sbjct: 21 PVGAVVVDAGGSVLAAAGNEVEARGDPTAHAEILALRAAAQRRGGKFLQGCRLFVTLEPC 80
Query: 80 SHY 82
Sbjct: 81 PLC 83
>gi|297156476|gb|ADI06188.1| hypothetical protein SBI_03067 [Streptomyces bingchenggensis BCW-1]
Length = 271
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCV 341
RG+T LL EGG + F + ++D + L + ++ E + F
Sbjct: 194 AERGLTRLLSEGGPKLLGQFAAAGVLDELCLSLAPLIAAGDAERIVKGPELVEPERFTLF 253
Query: 342 RRDYFGSDVCLEYIGKN 358
+ Y K
Sbjct: 254 SILEDAGFLFTSYRRKR 270
>gi|307154689|ref|YP_003890073.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
gi|306984917|gb|ADN16798.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
Length = 185
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IVKD V+ G + G H
Sbjct: 10 NWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPTGSVH 57
>gi|148260476|ref|YP_001234603.1| CMP/dCMP deaminase, zinc-binding [Acidiphilium cryptum JF-5]
gi|146402157|gb|ABQ30684.1| tRNA-adenosine deaminase [Acidiphilium cryptum JF-5]
Length = 151
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V ++V G V+ HAE+ AL A G+ +G +VTLEPC
Sbjct: 18 PVGAVVVDAGGSVLAAAGNEVEARGDPTAHAEILALRAAAQRRGGKFLQGCRLFVTLEPC 77
Query: 80 SHY 82
Sbjct: 78 PLC 80
>gi|322783203|gb|EFZ10789.1| hypothetical protein SINV_01360 [Solenopsis invicta]
Length = 175
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 21/90 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE- 62
+M+ AL+ + + G V CL + + VI G HAE+ +++
Sbjct: 6 WMNVALQKAEESLRAGEV----PVGCLFIYNNEVIATGNNTVNETCNATRHAEINCIDQV 61
Query: 63 ---AGEE-------ARGATAYVTLEPCSHY 82
E+ R VT+EPC
Sbjct: 62 LKFCKEKRVDYETVFRNLDVIVTVEPCIMC 91
>gi|313677530|ref|YP_004055526.1| bifunctional deaminase-reductase domain protein [Marivirga
tractuosa DSM 4126]
gi|312944228|gb|ADR23418.1| bifunctional deaminase-reductase domain protein [Marivirga
tractuosa DSM 4126]
Length = 179
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++L + +G L ++GG +F+ L+D + + I++G G + +
Sbjct: 100 EVLKQINEKGFHKLYIDGG-TTIRNFLKEDLIDEMKITTIPILLGGG--SPLFTDLPKKL 156
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
F + F + V Y K
Sbjct: 157 KFELIESKTFLNQVTQNHYKRKR 179
>gi|241950789|ref|XP_002418117.1| tRNA-specific adenosine deaminase subunit, putative;
tRNA-specific adenosine-34 deaminase subunit, putative
[Candida dubliniensis CD36]
gi|223641456|emb|CAX43417.1| tRNA-specific adenosine deaminase subunit, putative [Candida
dubliniensis CD36]
Length = 280
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQAL 60
++M+ +L + T V+C++V K +I G + G HAE AL
Sbjct: 8 HFQYMATSLFVGYKALLNNET--PVSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIAL 65
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+ E+ YVT+EPC
Sbjct: 66 QRFTEQKPSIGYNDLILYVTVEPCIMC 92
>gi|326915810|ref|XP_003204205.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Meleagris
gallopavo]
Length = 165
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 15 LRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA----- 63
L ++ + G V CL+V DG IG+G HAE+ A+++
Sbjct: 5 LAEAQEALEAGEV----PVGCLLVYDGEAIGKGRNEVNETKNATRHAEMVAIDQVLEWCQ 60
Query: 64 ------GEEARGATAYVTLEPCSHY 82
E + YVT+EPC
Sbjct: 61 QHKKAHEEVFSHSVLYVTVEPCIMC 85
>gi|322510984|gb|ADX06297.1| deoxycytidylate deaminase domain-containing protein [Organic Lake
phycodnavirus 2]
Length = 142
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 18/70 (25%)
Query: 31 VACLIVKDGIVIGRGVTAY-GGCP--------------HAEVQALEEA---GEEARGATA 72
V CLIV+D +I +G + G P HAE AL + G + A
Sbjct: 31 VGCLIVRDNRIISQGYNGFLPGLPHTSVVVDNHEIATIHAEQNALTDCAKRGVSCDKSVA 90
Query: 73 YVTLEPCSHY 82
Y+T PC +
Sbjct: 91 YITHYPCLNC 100
>gi|317126520|ref|YP_004100632.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
gi|315590608|gb|ADU49905.1| bifunctional deaminase-reductase domain protein [Intrasporangium
calvum DSM 43043]
Length = 176
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++AHS L+D +Y +V+G G P V + DV L
Sbjct: 116 AGPSLAHSLGRLGLIDEFRIYLHPVVLGH-GKPYFAGPR---PRLRLVASEQVAEDVLRL 171
Query: 353 EYIGK 357
Y+ +
Sbjct: 172 TYVPR 176
>gi|238855583|ref|ZP_04645885.1| ComE operon protein 2 [Lactobacillus jensenii 269-3]
gi|260664775|ref|ZP_05865626.1| ComE operon protein 2 [Lactobacillus jensenii SJ-7A-US]
gi|282932731|ref|ZP_06338139.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
gi|313472663|ref|ZP_07813152.1| ComE operon protein 2 [Lactobacillus jensenii 1153]
gi|238831800|gb|EEQ24135.1| ComE operon protein 2 [Lactobacillus jensenii 269-3]
gi|239529376|gb|EEQ68377.1| ComE operon protein 2 [Lactobacillus jensenii 1153]
gi|260561258|gb|EEX27231.1| ComE operon protein 2 [Lactobacillus jensenii SJ-7A-US]
gi|281303141|gb|EFA95335.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
Length = 160
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA-------- 55
++ FM AL S+ + V ++VKD +IG G + G H
Sbjct: 7 PWEQYFMMQALVISQRSTCNRA---LVGSVLVKDKRIIGTGYNGSVTGQAHCDDVGHQMV 63
Query: 56 ----------EVQALEEA---GEEARGATAYVTLEPCSHY 82
E+ L + G YVT PC +
Sbjct: 64 DGHCVRTIHSEMNTLIQCAKNGVSTLNTEIYVTHFPCYNC 103
>gi|220908332|ref|YP_002483643.1| bifunctional deaminase-reductase domain-containing protein
[Cyanothece sp. PCC 7425]
gi|219864943|gb|ACL45282.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC
7425]
Length = 177
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++T L G+ + + GG +A +F L+D I+ +V+G G S
Sbjct: 95 AIVTELAQLGLRRVWLVGGGELAGAFQRQGLLDEYIISVIPVVLGAG--ISLFGPSSSML 152
Query: 337 NFMCVRRDYFGSDVC-LEYIGK 357
+ F V L Y
Sbjct: 153 SLKLTSCQSFPRGVVQLHYRRD 174
>gi|29830136|ref|NP_824770.1| hypothetical protein SAV_3593 [Streptomyces avermitilis MA-4680]
gi|29607246|dbj|BAC71305.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 151
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 13/128 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66
M L +R T+ N ++ +++K G VIG+ V H E+ A+ +A E
Sbjct: 1 MEECLCLAREAA--TTGNYALGAVVIKGGQVIGKSGSKLVQGNDPTGHPEITAIRQAAER 58
Query: 67 -----ARGATAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A TLEPC + + I + V Q
Sbjct: 59 LGSRYLPDAYLVTTLEPCPMCTSAAIWAKMRGIAYGATQIDAVTWSQEHPDQKYTWRQIR 118
Query: 120 SQKGIIVD 127
+ ++
Sbjct: 119 MRARDVIR 126
>gi|325963162|ref|YP_004241068.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469249|gb|ADX72934.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
Length = 188
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ G + V GG +A F ++ L+D IIL +V+GEG PL+
Sbjct: 101 VADFERDAGGRNTWVVGGGNLAAQFADAGLLDEIILSVIPVVLGEGKRLLPLKGPT--PP 158
Query: 338 FMCVRRDYFGSDVC-LEYIGK 357
G + L Y+ K
Sbjct: 159 LELTGSRTMGRGIVELRYLLK 179
>gi|220911573|ref|YP_002486882.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
gi|219858451|gb|ACL38793.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus A6]
Length = 168
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA----------------GEEAR 68
+ +++ DG V+G G HAEV A+ +A G
Sbjct: 29 PIGAVVLGPDGEVLGAGRNRREELGDPTAHAEVVAIRQAAEQLRERARVGRGLDDGWRLS 88
Query: 69 GATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 89 DCTLVVTLEPCAMC 102
>gi|90409389|ref|ZP_01217468.1| dihydrofolate reductase-like protein [Psychromonas sp. CNPT3]
gi|90309505|gb|EAS37711.1| dihydrofolate reductase-like protein [Psychromonas sp. CNPT3]
Length = 186
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 3/153 (1%)
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
D + + ++ + + S++ T P +
Sbjct: 26 HTAGNLDADISNDDMGFHDFMGSVDCMIMGRKCMEMISQMNLTPEQWPYGKMPIYVLSKT 85
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
+ ++K L+ +G S ++GG + SF+N L++ IIL +
Sbjct: 86 LKDAPYNLQGKVEMYSGEIKLLIRTFEEKGYKSAYIDGGFTIT-SFLNHGLINEIILTKI 144
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+++G G P + F +D
Sbjct: 145 PVLLG-EGTPLF-GNVNKKLKLEKTEVKSFKND 175
>gi|311070241|ref|YP_003975164.1| putative oxidoreductase [Bacillus atrophaeus 1942]
gi|310870758|gb|ADP34233.1| putative oxidoreductase [Bacillus atrophaeus 1942]
Length = 174
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S +L + VL + + + D+K + L + +++ +
Sbjct: 53 STYEHIKVLTADFPYKDKTCYVLTKTPDRFSDEHVIFIHEDMKDFIQRLKKQRGSNIWIA 112
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA +AH+ I +D I+ +++G GIP E E FG L
Sbjct: 113 GGAELAHTLIKEGAIDEFIMTMIPVMLGS-GIPLFHE-HQTETKLRLTDMRRFGQAAQLH 170
Query: 354 Y 354
Y
Sbjct: 171 Y 171
>gi|308234244|ref|ZP_07664981.1| CMP/dCMP deaminase zinc-binding protein [Atopobium vaginae DSM
15829]
Length = 216
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80
+ ++V + ++ ++ HAE A+ +A ++ YVTLEPC
Sbjct: 89 PIGAVVVCNNTILSAAHNLRQHSHNPSDHAEFIAMLQAAKKLDSWHLERCCVYVTLEPCL 148
Query: 81 HY 82
Sbjct: 149 MC 150
>gi|50083486|ref|YP_044996.1| putative cytidine and deoxycytidylate deaminase zinc-binding
protein [Acinetobacter sp. ADP1]
gi|49529462|emb|CAG67174.1| putative cytidine and deoxycytidylate deaminase zinc-binding
protein [Acinetobacter sp. ADP1]
Length = 184
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 1 MPVSSFDARFMSAALRFSR--WHVGLTSTNPSVACLIVK-DGIVIGRGVTA-----YGGC 52
M S D F+ + GL A ++V DG ++
Sbjct: 25 MHPSEQDLYFLRKTFALAEQTKAQGL----HPFAAIVVDADGNIVTEAGNNSLPPTGDPT 80
Query: 53 PHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE A +A +E R T Y EPC+
Sbjct: 81 RHAETVAAGQAARLKSLKELRTCTLYTNAEPCAMC 115
>gi|311748025|ref|ZP_07721810.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
gi|126575006|gb|EAZ79364.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
Length = 178
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++L+ + G+G L ++GG + +F+ L+D +++ +++G G + E
Sbjct: 99 EILSKIHGKGFYRLYIDGGKTI-QTFLKKDLIDEMVITTIPVLLGSGIR--LFGDLPKEL 155
Query: 337 NFMCV-RRDYFGSDVCLEYIG 356
F C+ + G V Y+
Sbjct: 156 VFECINSTRFLGKVVQNHYVR 176
>gi|51473999|ref|YP_067756.1| cytosine aminohydrolase [Rickettsia typhi str. Wilmington]
gi|81610850|sp|Q68Y02|Y819_RICTY RecName: Full=Uncharacterized deaminase RT0819
gi|51460311|gb|AAU04274.1| Cytosine aminohydrolase [Rickettsia typhi str. Wilmington]
Length = 148
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 11 MSAALRFSRWHVGLTSTN-PSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEA 63
M AL+ +R N V +IV + +I HAE+ A+ EA
Sbjct: 1 MEQALKQARLAF---DKNEVPVGVVIVYRLNQKIIVSSHNNIEEKNNALCHAEIIAINEA 57
Query: 64 G-----EEARGATAYVTLEPCSHY 82
+ YVTLEPC+
Sbjct: 58 CNLISSKNLNDYDIYVTLEPCAMC 81
>gi|325104193|ref|YP_004273847.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
gi|324973041|gb|ADY52025.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
Length = 177
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L ++ +GGA V + + L+D I+ +++G G +G E+
Sbjct: 97 DLIDRLRSENGKNIYCDGGAEVINELLKYDLIDEFIISIVPVLLGNGIR--LFNDGRPEQ 154
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
V+ F + + L Y K
Sbjct: 155 MLEFVKAKTFETGLTQLHYKRKK 177
>gi|328954436|ref|YP_004371770.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454760|gb|AEB10589.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans
DSM 11109]
Length = 186
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 40/115 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAE------- 56
S+D FM A S + ++VKD ++ G + G PH
Sbjct: 4 SWDEYFMLIAKLVSTRSTCNSRPT---GAVLVKDRQILATGYNGSMPGAPHCTDQTMPDG 60
Query: 57 -----VQALEEA------------------------GEEARGATAYVTLEPCSHY 82
+AL+ A G +GA+ YVTLEPC
Sbjct: 61 SPYCHRRALQVADSDKYNFCRASHAEANAIAQAARHGVAIKGASLYVTLEPCYVC 115
>gi|302307191|ref|NP_983768.2| ADL328Cp [Ashbya gossypii ATCC 10895]
gi|299788881|gb|AAS51592.2| ADL328Cp [Ashbya gossypii ATCC 10895]
Length = 151
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 43/149 (28%), Gaps = 10/149 (6%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----HAEV 57
++ +D + M A + + P CLI + DG V+GRG H E
Sbjct: 1 MAQWDRKGMEIAYQEALQGYAE-GGVPIGGCLIDQTDGTVLGRGRNMRFQRASATLHGET 59
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
ALE AG + T Y TL PC + + +R G
Sbjct: 60 AALENAGRLPGHVYKHCTLYTTLSPCDMCAGAVLLYGIPRCVVGENDTFLGAEAHLRARG 119
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
+ L +
Sbjct: 120 VEVAVLQDARCRALMQQFVAARPQDWNED 148
>gi|227529916|ref|ZP_03959965.1| bifunctional deaminase-reductase domain protein [Lactobacillus
vaginalis ATCC 49540]
gi|227350170|gb|EEJ40461.1| bifunctional deaminase-reductase domain protein [Lactobacillus
vaginalis ATCC 49540]
Length = 232
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--LE 335
L + + ++++ GGA + +F+ + LVD I L + + G+ + +
Sbjct: 150 LGKLKKYFDIKTMVLGGGALINGAFLKAGLVDQISLVIAPYISGDSKKKGTFDTLGKFVN 209
Query: 336 KNFMCVRRDYFGS-DVCLEYIGK 357
+ F + G V L Y
Sbjct: 210 QRFHVTQTKKLGDGGVHLIYDRD 232
>gi|156841575|ref|XP_001644160.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
70294]
gi|156114796|gb|EDO16302.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM
70294]
Length = 242
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 6/182 (3%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D I I+ +K H LR D ILVG GTVLADDP L C
Sbjct: 29 PFVTLTYAQSIDARIAAQKGERTVISHEETKTMTHYLRYHHDGILVGTGTVLADDPGLNC 88
Query: 210 RL-NGLQEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
+ E+SP II+D K ++ I+V N+
Sbjct: 89 KWGKNCFENSPKPIIIDLKQKWKFTGSKLHQLYLNNQGKNPIVVVANEPINKEEHVEYLT 148
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSIILYRSQIVIGEG 323
I L + + S++VEGGA V + + S L++S+I+ +G
Sbjct: 149 IPTTNGKFDWGLLLNALKTNFNLNSIMVEGGAVVINQLLTESHLINSLIVTIGSTYLGNL 208
Query: 324 GI 325
G+
Sbjct: 209 GV 210
>gi|208435372|ref|YP_002267038.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
gi|208433301|gb|ACI28172.1| riboflavin biosynthesis protein [Helicobacter pylori G27]
Length = 344
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 112/335 (33%), Gaps = 69/335 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + + L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 8 LEICLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 HLKSDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAK--KGGLARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R H+
Sbjct: 185 RMNGDYYHG---KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDRFYHNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + ++ SK+ I D P
Sbjct: 242 PNIAILSKRSINPHSKVFSVPNRLVNIFNNPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D ++L+
Sbjct: 277 ---LEKGFN--FIEGGWGLFESLRDK--IDVLLLH 304
>gi|311694330|gb|ADP97203.1| CMP/dCMP deaminase, zinc-binding protein [marine bacterium HP15]
Length = 159
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 14 ALRFSR---WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEAGE 65
A+ + GL + +IV +G V+G+GV HAE+QA+ +A
Sbjct: 17 AIDLAISNVKAGGL-----PFSAVIVNQNGDVVGKGVNQVAEHLDCTAHAEIQAIRDASR 71
Query: 66 E-----ARGATAYVTLEPCSHY 82
+G T + EPC+
Sbjct: 72 NENSVSLKGTTLIASGEPCALC 93
>gi|330869907|gb|EGH04616.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 35
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC 33
+ D +M+ AL +R + T NP V C
Sbjct: 7 ALDVHYMARALELARNGLYSTHPNPRVGC 35
>gi|322794640|gb|EFZ17648.1| hypothetical protein SINV_16526 [Solenopsis invicta]
Length = 72
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP 53
+D FM+ A ++ N V IV D ++G G G P
Sbjct: 8 DWDDYFMATAFLSAKRSK---DPNTQVGACIVNNDNRIVGTGY---NGMP 51
>gi|294939942|ref|XP_002782608.1| Deoxycytidylate deaminase, putative [Perkinsus marinus ATCC 50983]
gi|239894442|gb|EER14403.1| Deoxycytidylate deaminase, putative [Perkinsus marinus ATCC 50983]
Length = 130
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 37/106 (34%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------- 53
FM+ A + + V +IV D V+G G G P
Sbjct: 25 EYFMALAHVTAMRSK---DPSTQVGAVIVNPDKKVVGIGY---NGFPSMGEIDNDALLNW 78
Query: 54 ----------------HAEVQAL-EEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + R Y TL PC
Sbjct: 79 GKKGDKPIDSKYWFVCHAEMNAIMNKNQHDIRDCAIYTTLFPCHEC 124
>gi|291287820|ref|YP_003504636.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
DSM 12809]
gi|290884980|gb|ADD68680.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus
DSM 12809]
Length = 151
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 33/113 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
+D F+ + T V LIVK+ ++ G
Sbjct: 4 DWDDYFIEMTNVVKKRS---TCLRRQVGALIVKNRHILATGYNGVPSGIRHCEETGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87
HAE A+ +A G GA Y +PCS +
Sbjct: 61 QLKIPSGQRHEICRGLHAEQNAIIQAAYHGISINGAVLYCNTKPCSICAKMIC 113
>gi|164658880|ref|XP_001730565.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
gi|159104461|gb|EDP43351.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966]
Length = 245
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 18/224 (8%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+TL A SQD I A + ++G S N H LRA DAILVGIGTVLADDP L
Sbjct: 17 NVWVTLTFAQSQDGKIAGANKRPLRLSGEKSMNMTHHLRAMHDAILVGIGTVLADDPRLN 76
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAFRKKNINI 267
RL+ SP +ILD H ++ + ++++ A P+++ E D A+ + +
Sbjct: 77 VRLDNYSGLSPRPVILDCHLQMPCECRLLQRVPRADPLVLCAEPADQNARKAWETRRQAL 136
Query: 268 IYCDCRD----------------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-SRLVDS 310
+ +L +L + S++VEGGAAV S + L+
Sbjct: 137 EHAGAHIRTVETFTNPQGKLHLAWPSILHVLAHEQLHSVMVEGGAAVIDSILASHHLLHK 196
Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+I+ S + +GE G+ + D +
Sbjct: 197 VIVTVSPVRVGEDGVGYTATPLQHAPYLQHIDTLELPPDTVFAW 240
>gi|190689519|gb|ACE86534.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog (S.
cerevisiae) protein [synthetic construct]
gi|190690877|gb|ACE87213.1| adenosine deaminase, tRNA-specific 2, TAD2 homolog (S.
cerevisiae) protein [synthetic construct]
Length = 160
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA--------- 63
++ + T V CL+V + V+G+G HAE+ A+++
Sbjct: 1 MAKEALENTEV--PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGK 58
Query: 64 --GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 59 SPSEVFEHTVLYVTVEPCIMC 79
>gi|159902662|ref|YP_001550006.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9211]
gi|159887838|gb|ABX08052.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9211]
Length = 217
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 45/127 (35%), Gaps = 5/127 (3%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
P+ + L I +L + L L +G++ +++ GG
Sbjct: 89 PQWPFFDQPIRRWLLTRKRIETLDICSALFENILEFDNNLTETLATLKKKGLSKIVLLGG 148
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF-GSDV 350
+ SF+ ++ + + V+G + +++ + +Y G+++
Sbjct: 149 PDLVESFLIEDKINELQITIIPKVLGGEKLWVNSNNLPNNLTKSNSWILKKTEYLEGNEL 208
Query: 351 CLEYIGK 357
L+YI
Sbjct: 209 MLQYIRN 215
>gi|300790762|ref|YP_003771053.1| cytidine and deoxycytidylate deaminase family protein
[Amycolatopsis mediterranei U32]
gi|299800276|gb|ADJ50651.1| cytidine and deoxycytidylate deaminase family protein
[Amycolatopsis mediterranei U32]
Length = 142
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63
M AAL +R + ++ DG+ + A HAE+ AL A
Sbjct: 1 MEAALEAARAPGADV----PIGAVVFGPDGVPLAAARNARIELGDPTAHAEILALRAAAQ 56
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G G T VTLEPC+
Sbjct: 57 VVGDGWRLEGCTLAVTLEPCTMC 79
>gi|253565359|ref|ZP_04842814.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251945638|gb|EES86045.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 225
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
+ + GV L + GG + F+ + L+D + + + + G +
Sbjct: 140 AMELLHEHFGVERLAIVGGGHICGGFLEAGLIDEVSIMVAPGIDGRKRQTVVFDGISRME 199
Query: 334 -LEKNFMCVRRDYFGSDV-CLEYIGK 357
+ + +D+ L Y K
Sbjct: 200 CNPYKLKLESVEQWEADIVWLRYKIK 225
>gi|218246093|ref|YP_002371464.1| CMP/dCMP deaminase [Cyanothece sp. PCC 8801]
gi|218166571|gb|ACK65308.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 8801]
Length = 179
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IVKD V+ G + G H
Sbjct: 10 TWDEYFLMIAKLAATRSTCLAFP---VGAVIVKDRQVLATGYNGSPSGSVH 57
>gi|158315851|ref|YP_001508359.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
gi|158111256|gb|ABW13453.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
Length = 212
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 14 ALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------HAEVQALEEA- 63
AL + G V ++ G +IG G HAE++AL
Sbjct: 25 ALEMAWESYLAGGVG----VGAILTDSGGRIIGYGRNQRFASASPRLLAHAEMEALAALP 80
Query: 64 --GEEARGATAYVTLEPCSHY 82
+ A A Y TL PC
Sbjct: 81 PGKDRAHDAVLYTTLHPCPMC 101
>gi|331242125|ref|XP_003333709.1| CMP/dCMP deaminase family protein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312699|gb|EFP89290.1| CMP/dCMP deaminase family protein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 169
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 20/114 (17%)
Query: 11 MSAALRFSRWHVGLTSTNP---SVACLIVKDG--IVIGRGVTAY-GGCPHAEVQALEEAG 64
M A+ +R L P V CL+ K G V+ G + G HAE A+ +
Sbjct: 13 MRKAIALAR----LCKPIPTAFCVGCLMTKTGTGEVVSEGYSRELEGNTHAEQCAIMKLS 68
Query: 65 E--------EARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPD 108
A Y T+EPCS G P + + + +
Sbjct: 69 PLDGPSSSMLAGDLDLYTTMEPCSIRLSGNKPCADLILQFNRSHHPHLRIKNIF 122
>gi|110679276|ref|YP_682283.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter denitrificans OCh 114]
gi|109455392|gb|ABG31597.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter denitrificans OCh 114]
Length = 155
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V +IV DG +I + HAE+ A+ A E YVTLEPC
Sbjct: 30 PVGAVIVAPDGAIIAAAGNQTRADHDPTAHAEILAIRRACAVLGSERLLDHALYVTLEPC 89
>gi|325962140|ref|YP_004240046.1| tRNA-adenosine deaminase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468227|gb|ADX71912.1| tRNA-adenosine deaminase [Arthrobacter phenanthrenivorans Sphe3]
Length = 157
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 21/74 (28%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR---------------- 68
+ +++ DG V+G G HAEV A+ EA E R
Sbjct: 18 PIGAVVIGPDGAVLGSGRNQREELGDPTAHAEVVAIREAAERLRQLSLNGGGRGDGWRLS 77
Query: 69 GATAYVTLEPCSHY 82
T VTLEPC+
Sbjct: 78 DCTLIVTLEPCAMC 91
>gi|144897625|emb|CAM74489.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Magnetospirillum gryphiswaldense MSR-1]
Length = 146
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++V+ G VI + HAE+Q + A YVTLEPC
Sbjct: 22 PVGAVLVRAGQVIAADGNRVEELHDPTAHAEMQVIRAAATRLGQTRLEECDLYVTLEPCP 81
Query: 81 HY 82
Sbjct: 82 MC 83
>gi|332885816|gb|EGK06062.1| riboflavin biosynthesis protein RibD domain-containing protein
[Dysgonomonas mossii DSM 22836]
Length = 176
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 3/114 (2%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ V+ + I D + ++ L + + + GG + F++
Sbjct: 65 IYPYESKMSYVITRNSINPQKDNICFISDDTIETVSELKKKQDKDIWLVGGGEIISLFLS 124
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
+ L+D II+ +++G GIP E + + + V ++Y K
Sbjct: 125 NNLIDEIIITTVPVMLG-NGIPLF-PANQQESKWDLKECTSYENGVVQVKYTRK 176
>gi|281351029|gb|EFB26613.1| hypothetical protein PANDA_000408 [Ailuropoda melanoleuca]
Length = 158
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 15/68 (22%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----------GEEARGATAYV 74
V CL+V + V+G+G HAE+ A+++A E YV
Sbjct: 11 PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWCHRSGKSPSEVFEHTVLYV 70
Query: 75 TLEPCSHY 82
T+EPC
Sbjct: 71 TVEPCIMC 78
>gi|34810531|pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
gi|34810532|pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
gi|46015452|pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
gi|46015453|pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 11 SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 70 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF---------KSK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 155
>gi|254441742|ref|ZP_05055235.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Octadecabacter antarcticus 307]
gi|198251820|gb|EDY76135.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Octadecabacter antarcticus 307]
Length = 182
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP------- 53
++++D RF + + W + V C+IV ++ ++ G G P
Sbjct: 31 TITNWDRRFFQLSNTIAGWSEDQSRK---VGCVIVSQENGILSTGY---NGFPREVLDKP 84
Query: 54 ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ A G + YV L PC+
Sbjct: 85 DRHSSLDGEKYYWFEHAERNAIYNAVRSGSALLNSRLYVNLFPCADC 131
>gi|187251580|ref|YP_001876062.1| deoxycytidylate deaminase [Elusimicrobium minutum Pei191]
gi|186971740|gb|ACC98725.1| Deoxycytidylate deaminase [Elusimicrobium minutum Pei191]
Length = 168
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 56/130 (43%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
+ + F+ A + T V ++VKD VI G G P
Sbjct: 1 MKNKHKLFIEMAKLIAAQS---TCCRLQVGAVLVKDNRVISIGY---NGVPSGQCHCDDN 54
Query: 54 --------------------------------------HAEVQAL---EEAGEEARGATA 72
HAE A+ + G GAT
Sbjct: 55 FAEIYKKEFSSQYATLEEFLKSPDFFKVHGQWSMDNELHAEQNAILFAAKNGISTAGATV 114
Query: 73 YVTLEPCSHY 82
YVTL PC +
Sbjct: 115 YVTLSPCINC 124
>gi|116671966|ref|YP_832899.1| CMP/dCMP deaminase, zinc-binding [Arthrobacter sp. FB24]
gi|116612075|gb|ABK04799.1| CMP/dCMP deaminase, zinc-binding protein [Arthrobacter sp. FB24]
Length = 164
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAE 56
V++ D +++ ++R + +V + ++V DG G GV HAE
Sbjct: 4 TVTAQD--YLAKSIRLATANVLNSGG--PFGAVVVTADGQSFG-GVNRVTATNDPTAHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V A+ A + GAT Y + EPC
Sbjct: 59 VTAIRRACSELGTFDLTGATLYTSCEPCPMC 89
>gi|333025189|ref|ZP_08453253.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp.
Tu6071]
gi|332745041|gb|EGJ75482.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp.
Tu6071]
Length = 151
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
M + ++ A+ +R + + + DG ++GRG H
Sbjct: 1 MLTTEQAQEWLRPAVEEARQGLAEGGV--PIGAALYGADGTLLGRGHNRRVQDADPSSHG 58
Query: 56 EVQALEEAGEE--ARGATAYVTLEPCSHYG 83
E A +AG + RG T TL PC +
Sbjct: 59 ETDAFRKAGRQRTYRGTTMVTTLSPCWYCS 88
>gi|78357476|ref|YP_388925.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219881|gb|ABB39230.1| cytidine/deoxycytidylate deaminase family protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 155
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 26/108 (24%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
FM + V + VKD ++ G
Sbjct: 9 HYFMDITYLVAERSTCTRRK---VGAIAVKDKRILATGYNGAPSNVAHCLDVGCLREELG 65
Query: 47 ------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G GA Y T +PC +
Sbjct: 66 VPSGQRHEICRGLHAEQNVIIQAAIHGVSLAGAEIYCTTQPCLICTKM 113
>gi|308175184|ref|YP_003921889.1| oxidoreductase [Bacillus amyloliquefaciens DSM 7]
gi|307608048|emb|CBI44419.1| putative oxidoreductase [Bacillus amyloliquefaciens DSM 7]
gi|328555155|gb|AEB25647.1| oxidoreductase [Bacillus amyloliquefaciens TA208]
gi|328913513|gb|AEB65109.1| putative oxidoreductase [Bacillus amyloliquefaciens LL3]
Length = 176
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG + + LVD I+ + +++G GIP G E +
Sbjct: 109 KRIWIVGGGDLLQPILKEELVDEFIIQVAPVLLG-RGIPLF-RPGETETALKLTDVRRYK 166
Query: 348 SDVCLEYIGK 357
L Y +
Sbjct: 167 QFAELRYEVR 176
>gi|256080810|ref|XP_002576669.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
gi|238661948|emb|CAZ32906.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
Length = 165
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
M A + + + P V C V +G VI G HAE+ + +
Sbjct: 1 MDIAFELACEAL-RCNEVP-VGCAFVYNGEVIASGRNEVNATRDATQHAEMVTIRRLEQW 58
Query: 67 ARG-----------ATAYVTLEPCSHY 82
R +VT+EPC
Sbjct: 59 CRNNQKELDKILVECDLFVTVEPCIMC 85
>gi|269928875|ref|YP_003321196.1| bifunctional deaminase-reductase domain-containing protein
[Sphaerobacter thermophilus DSM 20745]
gi|269788232|gb|ACZ40374.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
thermophilus DSM 20745]
Length = 192
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA++A S + L+D L+ +V+G G P + +R G V L
Sbjct: 124 GGASIAASLMRHDLIDEYHLFIHPVVLGGGTPMFPALSDQRLLRLIDMRTFRSGV-VFLR 182
Query: 354 YIGKN 358
Y +
Sbjct: 183 YQPAD 187
>gi|298529750|ref|ZP_07017153.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511186|gb|EFI35089.1| CMP/dCMP deaminase zinc-binding [Desulfonatronospira thiodismutans
ASO3-1]
Length = 152
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D +M SR T V + VKD ++ G
Sbjct: 6 SWDQYYMRITHLVSRRS---TCLRRVVGAMAVKDKRILATGYNGAPAGLEHCQDVGCLRD 62
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE + +A G G+ Y T +PC +
Sbjct: 63 EMGIPSGERHELCRGLHAEQNVIIQAAIHGVSITGSFIYCTTQPCLICSKM 113
>gi|198426798|ref|XP_002125101.1| PREDICTED: similar to deaminase domain containing 1 [Ciona
intestinalis]
Length = 178
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 12/124 (9%)
Query: 9 RFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALE 61
++M+ A ++ + G V C++V K+ + G HAE+ A++
Sbjct: 8 KWMNEAFNYAEDALKEGEV----PVGCVLVYKNKEKLSNGRNKVNETKNATRHAELVAID 63
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
A + + +L + C ++ + + + G
Sbjct: 64 NAIKTVTSDSWKQSLPNDWKFTDVFEHCVMYVTVEPCIMCCGAMRAMKIPLVVFGCNNER 123
Query: 121 QKGI 124
G
Sbjct: 124 FGGC 127
>gi|326430014|gb|EGD75584.1| deoxycytidylate deaminase [Salpingoeca sp. ATCC 50818]
Length = 237
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 34/104 (32%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------------- 53
M+ A+ S+ V C+IV GIV+ G G P
Sbjct: 23 HMAMAILASKRSK---DPVTQVGCVIVDPKGIVVSMGY---NGFPIGCSDEELPWDKHAD 76
Query: 54 -----------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE+ A+ + + G Y TL PC+ +
Sbjct: 77 NPLETKFPYVCHAEMNAILNTNDQDVSGCILYATLFPCNECAKM 120
>gi|307209295|gb|EFN86380.1| tRNA-specific adenosine deaminase 2 [Harpegnathos saltator]
Length = 175
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE- 62
+M AAL+ + + G V CL V + I G HAE+ +++
Sbjct: 6 WMDAALQKAEESLREGEV----PVGCLFVYNNEAIATGNNTVNETCNATRHAEINCIDQV 61
Query: 63 ---AGEE-------ARGATAYVTLEPCSHY 82
E+ R VT+EPC
Sbjct: 62 LRFCKEKQLEHETVFRNLDVIVTVEPCIMC 91
>gi|320585803|gb|EFW98482.1| riboflavin biosynthesis protein [Grosmannia clavigera kw1407]
Length = 281
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP-- 326
+L + G+ S+++EGG + ++ + + LV S+I+ + + +G GG+
Sbjct: 185 RFRWDDVLDSVASHGLRSIMIEGGGNIINTLLEPTNTHLVRSVIVTIAPVWLGRGGVMVS 244
Query: 327 -----SPLEEGYLEKNFMCVRRDYFGSDVCL 352
V+ G DV L
Sbjct: 245 PNRVHGADNRAVPAARLADVKWQQLGEDVVL 275
>gi|70989807|ref|XP_749753.1| deoxycytidylate deaminase [Aspergillus fumigatus Af293]
gi|66847384|gb|EAL87715.1| deoxycytidylate deaminase, putative [Aspergillus fumigatus Af293]
gi|159129162|gb|EDP54276.1| deoxycytidylate deaminase, putative [Aspergillus fumigatus A1163]
Length = 370
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
++D FM A ++ + V C++V++ VI G G P
Sbjct: 189 NWDLYFMQLASLAAQRSNCMKR---RVGCVLVRERRVISTGY---NGTP 231
>gi|227506029|ref|ZP_03936078.1| nucleoside deaminase [Corynebacterium striatum ATCC 6940]
gi|227197311|gb|EEI77359.1| nucleoside deaminase [Corynebacterium striatum ATCC 6940]
Length = 156
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 15 LRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA------ 63
L +R + + V ++ G + GV HAEV+A+ A
Sbjct: 18 LEVARQ---TPAGDIPVGAVLYDAAGNELSTGVNRREQRGDPTAHAEVEAIRAAVAKHGN 74
Query: 64 GEEARGATAYVTLEPCSHY 82
G G VTLEPC+
Sbjct: 75 GWRLEGCEIVVTLEPCAMC 93
>gi|260830687|ref|XP_002610292.1| hypothetical protein BRAFLDRAFT_126857 [Branchiostoma floridae]
gi|229295656|gb|EEN66302.1| hypothetical protein BRAFLDRAFT_126857 [Branchiostoma floridae]
Length = 267
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV---TAYGGCPHAEVQALEE 62
++M AL+ ++ T P V ++V VIG G A HA + A++
Sbjct: 191 QKYMQRALQAAQHAK-QTGMEP-VGAVVVDPVADEVIGVGHDLRHAGNPLHHAVMVAVDT 248
Query: 63 AGEEARG 69
G
Sbjct: 249 VASSQDG 255
>gi|164658698|ref|XP_001730474.1| hypothetical protein MGL_2270 [Malassezia globosa CBS 7966]
gi|159104370|gb|EDP43260.1| hypothetical protein MGL_2270 [Malassezia globosa CBS 7966]
Length = 275
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 39/111 (35%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
++D F+ + + V ++V+ V+ G G P
Sbjct: 129 TWDTYFVRLCTLAAMRSNCMKR---RVGAVLVRQHRVLSTGY---NGTPRGLLNCNEGGC 182
Query: 54 -------------------HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE AL E G + A+G Y PC
Sbjct: 183 ARCNESAPCGSSLDECLCLHAEENALLELGRDRGGAQGTVLYCNTCPCLRC 233
>gi|303239763|ref|ZP_07326287.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
gi|302592700|gb|EFL62424.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2]
Length = 148
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------------------ 46
S+D FM + + T V LI KD ++ G
Sbjct: 4 SWDQYFMEI-VDLIKSR--STCKRRQVGALIAKDKRILATGYNGAPMGCKHCDEIGCLRE 60
Query: 47 ---------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G + T YVT +PC +
Sbjct: 61 KMNVPSGERHELCRAIHAEQNAIVQAAYSGTSVKDGTLYVTNQPCVLCAKM 111
>gi|120406536|ref|YP_956365.1| CMP/dCMP deaminase [Mycobacterium vanbaalenii PYR-1]
gi|119959354|gb|ABM16359.1| tRNA-adenosine deaminase [Mycobacterium vanbaalenii PYR-1]
Length = 166
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ ++ DG + R A HAE+ AL A G GAT VT+EP
Sbjct: 40 PIGAVVFAPDGRELARAANAREEFGDPTAHAEILALRAAARELGDGWRLEGATLAVTVEP 99
Query: 79 CSHY 82
C+
Sbjct: 100 CTMC 103
>gi|50286109|ref|XP_445483.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524788|emb|CAG58394.1| unnamed protein product [Candida glabrata]
gi|109706861|gb|ABG43005.1| cytosine deaminase [Candida glabrata]
gi|109706865|gb|ABG43007.1| cytosine deaminase [Candida glabrata]
Length = 155
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 19/153 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAEVQAL 60
+DA M A + P CLI KDG V+GRG G P H E+ L
Sbjct: 7 WDALGMKIAYEEAAKG-FEEGGVPIGGCLINNKDGTVLGRGHNMRFQKGSPTLHGEISTL 65
Query: 61 EEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
E G+ + T Y TL PC + G
Sbjct: 66 ENCGRLEGKVYKDTTLYTTLSPCDMCTGAILLYGIPRCV---------IGESDNFKSPGE 116
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
++L +G+ V +M + K + ++ + +
Sbjct: 117 EYLKSRGVEVVQMNDEPCKAIMKKFIDTRPQDW 149
>gi|317010121|gb|ADU80701.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori India7]
Length = 344
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 100/322 (31%), Gaps = 65/322 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + H L NPSVAC ++ K ++ PHAEV A + A + R
Sbjct: 8 LEVCLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIATEENEAK--KGGLARLQKACIETIICHNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R
Sbjct: 185 RMNGDYYHG---KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDRFYQHKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + + + V + D
Sbjct: 242 PNIAILSKRPINPHSKVFSVPNRLVNTFHDPKDLP------------------------- 276
Query: 281 ILVGRGVTSLLVEGGAAVAHSF 302
+ +G +EGG + S
Sbjct: 277 --LEKGFN--FIEGGWELFESL 294
>gi|56752247|ref|YP_172948.1| putative cytidine and deoxycytidylate deaminase [Synechococcus
elongatus PCC 6301]
gi|56687206|dbj|BAD80428.1| putative cytidine and deoxycytidylate deaminase [Synechococcus
elongatus PCC 6301]
Length = 168
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60
R+M+ A + G P + +IV G ++ G C HAE+ A+
Sbjct: 15 ETHHRWMTIAYEQAVIA-GTAGEIP-IGAVIVHQGHLLATGQNRRERDRDPCGHAEIIAI 72
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
A YVTLEPC
Sbjct: 73 RAAAARIGDWRLSDCHLYVTLEPCPMC 99
>gi|54295924|ref|YP_122236.1| hypothetical protein plpp0081 [Legionella pneumophila str. Paris]
gi|53755756|emb|CAH17258.1| hypothetical protein plpp0081 [Legionella pneumophila str. Paris]
Length = 390
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+L+ L G L ++GG V +FI + L+ + + + +++G G S
Sbjct: 101 PIELVKRLTDEGFKHLYIDGGITV-QNFIAANLIHELTITIAPVLLGSG--RSLFGHLTQ 157
Query: 335 EKNFMCVRRDYFGSD-VCLEYI 355
+ + G V L+Y
Sbjct: 158 DIELEHLETKCIGGGFVQLKYR 179
>gi|167520965|ref|XP_001744821.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776435|gb|EDQ90054.1| predicted protein [Monosiga brevicollis MX1]
Length = 143
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 34/104 (32%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------------- 53
+MS A+ ++ N V C I+ DGIV+ G G P
Sbjct: 12 YMSMAMLAAKRSK---DPNTQVGCTIINPDGIVVSMGY---NGFPIGCSDQELPWQKHSA 65
Query: 54 -----------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRS 85
HAE+ A+ E RG T Y TL PC+ +
Sbjct: 66 NPLETKFPYVCHAEMNAILNTNDESVRGCTLYATLFPCNECAKM 109
>gi|163745925|ref|ZP_02153284.1| cytidine and deoxycytidylate deaminase family protein
[Oceanibulbus indolifex HEL-45]
gi|161380670|gb|EDQ05080.1| cytidine and deoxycytidylate deaminase family protein
[Oceanibulbus indolifex HEL-45]
Length = 145
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V G ++ HAE+ AL A E G YVTLEPC
Sbjct: 18 PVGAVVVSPAGQIVAAAGNETRARNDPTAHAEMLALRAACAAVGSERLIGHALYVTLEPC 77
>gi|256544495|ref|ZP_05471868.1| cytidine/deoxycytidylate deaminase family protein [Anaerococcus
vaginalis ATCC 51170]
gi|256399820|gb|EEU13424.1| cytidine/deoxycytidylate deaminase family protein [Anaerococcus
vaginalis ATCC 51170]
Length = 146
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT-AYGGCPH-------- 54
+++ F+ A + T V C++V + +I G + G PH
Sbjct: 7 TWNEYFIKLAHMVALRG---TCDRAYVGCVLVNGENRIISTGYNGSIKGNPHCDEVGHTM 63
Query: 55 ----------AEVQAL---EEAGEEARGATAYVTLEPCSHY 82
AE+ AL + G + + YVT PC +
Sbjct: 64 RDGHCIATIHAEMNALLYCAKEGIPVKNSICYVTHFPCLNC 104
>gi|169844953|ref|XP_001829197.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
gi|116509937|gb|EAU92832.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130]
Length = 239
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 20/215 (9%)
Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213
L A S D I + ++ S H LR+ DAILVG T + D+P+L RL
Sbjct: 17 LTFAQSLDAKIAGQNGSQIALSCSESMQMTHRLRSLHDAILVGANTAINDNPQLNTRLLP 76
Query: 214 LQEHSPMR-IILDPHFKLSLDSKIIKTA----LLAPVIIVTENDDPVLAL---------A 259
+++ R IILD + +L + K+++ + P ++ +DDP A
Sbjct: 77 VEDQKNPRPIILDTNLRLGPNCKLLQNYASGRGVQPWLLTPGSDDPDWLKRKSLLEDAGA 136
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-----VDSIILY 314
D+ +L L G+ SL+VEGGAAV SF+ + L +D +I+
Sbjct: 137 RIVIYAPSGGPRADDVPSILASLSTNGIRSLMVEGGAAVIQSFVTAHLKYGRIIDRVIIT 196
Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + +GEG + F+ + G+D
Sbjct: 197 VAPVFVGEGVTYTFPVSNEGPP-FVHKQTFLAGTD 230
>gi|326203162|ref|ZP_08193028.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
gi|325986808|gb|EGD47638.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM
2782]
Length = 137
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 33 CLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA------RGATAYVTLEPCSHY 82
+I +G ++ +G T + HAE+ A+ A + +G Y T EPC
Sbjct: 17 AVIDAEGNIVSKGKTTVRDDHDPTAHAEINAIRSACKRLKVDVLPKGYWLYSTFEPCPLC 76
>gi|325964675|ref|YP_004242581.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470762|gb|ADX74447.1| cytosine/adenosine deaminase [Arthrobacter phenanthrenivorans
Sphe3]
Length = 164
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-------GCP 53
M + +F++ ++R + +V + +IV GR
Sbjct: 1 MSTTVTAEQFLARSIRLATANVLNSGG--PFGAMIVTAD---GRAFDGVNRVTADNDPTA 55
Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV A+ A + GAT Y + EPC
Sbjct: 56 HAEVTAIRTACRELGTFDLSGATLYTSCEPCPMC 89
>gi|119505172|ref|ZP_01627247.1| putative zinc-binding hydrolase [marine gamma proteobacterium
HTCC2080]
gi|119458863|gb|EAW39963.1| putative zinc-binding hydrolase [marine gamma proteobacterium
HTCC2080]
Length = 78
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 30 SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
V ++ D G V+ A HAE+ AL E+ G T YVTLEPC
Sbjct: 18 PVGAVLAADSGEVLAVASNAQIMSCDPTAHAEMLALRLGAEKLNNYRLPGCTLYVTLEPC 77
>gi|323145928|gb|ADX32169.1| hypothetical protein [Pseudomonas phage P3_CHA]
gi|323146114|gb|ADX32354.1| hypothetical protein [Pseudomonas phage PAK_P3]
Length = 138
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 32/142 (22%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----------------YGG 51
FM A F+ VG+ + V +IV+ +I +G
Sbjct: 7 EAFMRCAESFAECSVGVRAK---VGAVIVQGNKIISQGYNGLPSGLEGPLENEEGVTRPE 63
Query: 52 CPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
HAE A L + E A+GA + T+ PC ++ + + V
Sbjct: 64 VRHAEKNALLWLSCSQESAQGAWMFATMSPC----------EYCAHDIVDAGIKRVYYRH 113
Query: 109 VRVSGRGLQWLSQKGIIVDRMM 130
G+ +L + G+ V M
Sbjct: 114 QYRLTAGIDYLLKNGVEVIHMP 135
>gi|170032967|ref|XP_001844351.1| tRNA-specific adenosine deaminase subunit TAD2 [Culex
quinquefasciatus]
gi|167873308|gb|EDS36691.1| tRNA-specific adenosine deaminase subunit TAD2 [Culex
quinquefasciatus]
Length = 165
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 14/121 (11%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEA 63
RFM AL +R L V C+ V+ +I G H E ++++
Sbjct: 3 RFMEQALEQARLAEQL--KEVPVGCVFVRGQDEIIANGCNRVNETKNATRHVEFLCIDQS 60
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
E Y + + VR G G
Sbjct: 61 LE-------YARQRDIPWEDLFREVTVVVTVEPCIMCAGALLQLGVREIIYGCGNDRFGG 113
Query: 124 I 124
Sbjct: 114 C 114
>gi|332028253|gb|EGI68300.1| tRNA-specific adenosine deaminase 2 [Acromyrmex echinatior]
Length = 175
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE- 62
+M AL+ + + G V CL + + +I G HAE+ +++
Sbjct: 6 WMDVALQKAEESLKAGEV----PVGCLFIYNNQIIATGNNTVNETCNATRHAEINCIDQV 61
Query: 63 ---AGEE-------ARGATAYVTLEPCSHY 82
E+ R VT+EPC
Sbjct: 62 LKFCKEKSMDYEMVFRNLDVIVTVEPCIMC 91
>gi|257067810|ref|YP_003154065.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
gi|256558628|gb|ACU84475.1| cytosine/adenosine deaminase [Brachybacterium faecium DSM 4810]
Length = 158
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 9 RFMSAALRFS----RWHVGLTSTNPSVACLI-VKDGIVIGRGVTA----YGGCPHAEVQA 59
+ A+ + G ++ DG + G + HAEV+A
Sbjct: 8 EHLHRAVELAVASVARGGG------PFGAVVLTADGTAV-EGANRVTAAHDPTAHAEVEA 60
Query: 60 LEEAGEE-----ARGATAYVTLEPCSHY 82
+ EA RGA Y + EPC
Sbjct: 61 IREACRRSGSHELRGAVLYASCEPCPMC 88
>gi|323331315|gb|EGA72733.1| Fcy1p [Saccharomyces cerevisiae AWRI796]
Length = 153
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 3 SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 61
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 62 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF---------KSK 112
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 113 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 147
>gi|332524178|ref|ZP_08400405.1| bifunctional deaminase-reductase domain protein [Rubrivivax
benzoatilyticus JA2]
gi|332107514|gb|EGJ08738.1| bifunctional deaminase-reductase domain protein [Rubrivivax
benzoatilyticus JA2]
Length = 225
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 26/69 (37%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L T+ GV L ++ G + + LVD + L + ++G P+ ++ L
Sbjct: 131 LRTLKALHGVERLTIQTGGTLNALLLRQGLVDRVSLVLAPALVGGATTPTLVDGAPLRDA 190
Query: 338 FMCVRRDYF 346
+
Sbjct: 191 AELRQVKAL 199
>gi|255283483|ref|ZP_05348038.1| RibD domain protein [Bryantella formatexigens DSM 14469]
gi|255265940|gb|EET59145.1| RibD domain protein [Bryantella formatexigens DSM 14469]
Length = 226
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 34/101 (33%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+++T N + I + L + G + ++ G + F+
Sbjct: 105 VLITSNKNHPAFEMEEDNLHIIYQNELSPEDALARLKADYGCERITIQTGGTLNGLFLRE 164
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+L+D + + + +++G + ++ L +
Sbjct: 165 KLIDFVDIVVAPVLVGGKDTATLIDGKSLLSENELSKLCVL 205
>gi|319785885|ref|YP_004145360.1| cytosine deaminase [Pseudoxanthomonas suwonensis 11-1]
gi|317464397|gb|ADV26129.1| Cytosine deaminase [Pseudoxanthomonas suwonensis 11-1]
Length = 158
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 9/119 (7%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHA 55
M + ++ A+ +R + + + DG ++GRG H
Sbjct: 1 MSQTPDHRAMLAIAVEEARQGLAEGGI--PIGAALFAADGTLLGRGHNRRVQENDPSVHG 58
Query: 56 EVQALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
E A +AG R TL PC + V +R
Sbjct: 59 ETDAFRKAGRQRSYRDTIMVTTLSPCWYCSGLVRQFGIGTVVMGEAVNFQGGHDWLREQ 117
>gi|163733416|ref|ZP_02140859.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter litoralis Och 149]
gi|161393204|gb|EDQ17530.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter litoralis Och 149]
Length = 149
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V DG++I HAE+ A+ A E YVTLEPC
Sbjct: 24 PVGAVVVDPDGLIIAAAGNQTRADLDPTAHAEMLAIRRACAVLGTERLIDHALYVTLEPC 83
>gi|119963022|ref|YP_946468.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119949881|gb|ABM08792.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 201
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
S+ + GG +A + +D ++L RS ++ G GIP Y F V FG
Sbjct: 127 QSIWLCGGGQLATQL--AGEIDRLVLKRSPVLFG-DGIPLFAPGTYQPSAFNEVSTTAFG 183
Query: 348 SDVCLEYIGKNLCLQE 363
S V + + Q+
Sbjct: 184 SGVVISEYARRQLSQD 199
>gi|310790867|gb|EFQ26400.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 149
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQALE 61
DA ++ A+ ++ + +V DG ++GRG G H E AL
Sbjct: 3 DAEGLAIAIEEAKTGASEGGV--PIGAALVSADGKLLGRGHNRRVQMGSAIHHGETDALF 60
Query: 62 EA----GEEARGATAYVTLEPCSHYGRSPPCA 89
+ G+ +G+T Y TL PC +
Sbjct: 61 NSGRLPGKAYKGSTMYTTLSPCDMCTGACLLY 92
>gi|154253639|ref|YP_001414463.1| deaminase-reductase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157589|gb|ABS64806.1| bifunctional deaminase-reductase domain protein [Parvibaculum
lavamentivorans DS-1]
Length = 176
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ R + + L + P E + +
Sbjct: 15 YVDHMGFAPGPRLFRHFIEQTRGLTGSLYGRQLYEIMRYWDEEHPEWGAPEREFAAAWRS 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSII 312
K ++ L+ + + L E GG +A S L+D
Sbjct: 75 NPKWVVSRTLKSVGPNATLVAGELAAAIRKLKAEFDGEIEVGGPELARSLTELGLIDEYR 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+Y +V+G G P D G D + L Y+
Sbjct: 135 IYLHPVVLGS-GTPFFAGPR---PPLRLAASDPMGEDVIRLTYVP 175
>gi|183219547|ref|YP_001837543.1| hypothetical protein LEPBI_I0120 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909690|ref|YP_001961245.1| dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167774366|gb|ABZ92667.1| Dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167777969|gb|ABZ96267.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 187
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V + K +D ++ L G L V G ++ S
Sbjct: 70 EGEVAKYMNQIPKLACSTTLKNADWNNTTIVKDAVGEVSKLKQEGNGDLYVFGSGILSAS 129
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSDVCLEYIGKN 358
F+ + L D L + + +G+G EG + + G L Y+ +
Sbjct: 130 FMKAGLFDEYRLCIAPVFLGKGRR--LFLEGIPNQELTLIESKPLSTGG-ALLTYLPQE 185
>gi|6325319|ref|NP_015387.1| Fcy1p [Saccharomyces cerevisiae S288c]
gi|2493561|sp|Q12178|FCY1_YEAST RecName: Full=Cytosine deaminase; AltName: Full=Cytosine
aminohydrolase
gi|30750134|pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
gi|30750135|pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
gi|805042|emb|CAA89179.1| unknown [Saccharomyces cerevisiae]
gi|1314130|emb|CAA95006.1| unknown [Saccharomyces cerevisiae]
gi|1762322|gb|AAC13409.1| cytosine deaminase [Saccharomyces cerevisiae]
gi|2343114|gb|AAB67713.1| cytosine deaminase [Saccharomyces cerevisiae]
gi|151942846|gb|EDN61192.1| cytosine deaminase [Saccharomyces cerevisiae YJM789]
gi|190407999|gb|EDV11264.1| cytosine deaminase [Saccharomyces cerevisiae RM11-1a]
gi|256268919|gb|EEU04266.1| Fcy1p [Saccharomyces cerevisiae JAY291]
gi|259150215|emb|CAY87018.1| Fcy1p [Saccharomyces cerevisiae EC1118]
gi|285815591|tpg|DAA11483.1| TPA: Fcy1p [Saccharomyces cerevisiae S288c]
gi|323302562|gb|EGA56369.1| Fcy1p [Saccharomyces cerevisiae FostersB]
gi|323335147|gb|EGA76437.1| Fcy1p [Saccharomyces cerevisiae Vin13]
gi|323346295|gb|EGA80585.1| Fcy1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350206|gb|EGA84353.1| Fcy1p [Saccharomyces cerevisiae VL3]
Length = 158
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 8 SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 67 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF---------KSK 117
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 118 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152
>gi|302535698|ref|ZP_07288040.1| cytidine/deoxycytidine deaminase [Streptomyces sp. C]
gi|302444593|gb|EFL16409.1| cytidine/deoxycytidine deaminase [Streptomyces sp. C]
Length = 163
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M AL + G V +++ G ++ G HAE+ AL A
Sbjct: 22 MRLALEEAALAVPAGDV----PVGAVVLGPGGELLSTGHNEREAAGDPTAHAELLALRRA 77
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 78 AARLGEWRLTGCTLVVTLEPCVMC 101
>gi|317013277|gb|ADU83885.1| riboflavin biosynthesis protein [Helicobacter pylori Lithuania75]
Length = 344
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 69/373 (18%), Positives = 122/373 (32%), Gaps = 72/373 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + + L NPSVAC ++ K ++ PHAEV A + A + R
Sbjct: 8 LEICLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 HLKNDLEKLEDPKTLSDFLKKHHNNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAK--KGGLARLQKARIETMICRNLENKAKDLLLPFRVMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R H+
Sbjct: 185 RMNGDYYHG---KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDSRFCDRFYHNKN 241
Query: 221 R-IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279
I + ++ SK+ I D P
Sbjct: 242 PNIAILSKRSINPHSKVFSAPNRLVNIFNNPKDLP------------------------- 276
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ +G +EGG + S + +D+++L+ +IGE +
Sbjct: 277 ---LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGEA---FSVFALKTPFKGR 326
Query: 340 CVRRDYFGSDVCL 352
+ ++ L
Sbjct: 327 LLHAQILENEALL 339
>gi|294950861|ref|XP_002786810.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901164|gb|EER18606.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 232
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
I ++ +V+ HAE+ A+ A ++ G Y + EPC
Sbjct: 19 PFGACITRNDVVVCCAHNTFFSDRDPTCHAEMNAIRMAMHLLKTDDLAGCVIYSSFEPCP 78
Query: 81 HY 82
Sbjct: 79 MC 80
>gi|317507917|ref|ZP_07965613.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
gi|316253782|gb|EFV13156.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
Length = 166
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 30 SVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
V ++ DG + R A HAE+ AL +A G G T VTLEP
Sbjct: 30 PVGAVVFGPDGAELARAANAREALGDPTAHAEILALRQAAAVLGDGWRLVGCTLAVTLEP 89
Query: 79 CSHY 82
C+
Sbjct: 90 CTMC 93
>gi|304405999|ref|ZP_07387657.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345242|gb|EFM11078.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 172
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ L +G + L+ GGA + +SF+ LVD +I + ++ G+G + Y K
Sbjct: 90 SHLHEQGHQTALISGGADIHNSFLGQGLVDEVIFNVAPVMEGKGLNLLIDSDQYQFKQVQ 149
Query: 340 CVRRDYFGSDVC-LEY 354
+ G + L Y
Sbjct: 150 LLDCKPLGGGIVQLRY 165
>gi|297192826|ref|ZP_06910224.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197722375|gb|EDY66283.1| cytidine/deoxycytidine deaminase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 149
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 5 SFDAR--FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEV 57
+ D +++ A+ +R + + + DG ++GRG HAE
Sbjct: 2 AQDRYGTWLATAVAEARAGLAEGGI--PIGAALYGADGTLLGRGHNRRVQDGDPSAHAET 59
Query: 58 QALEEAG--EEARGATAYVTLEPCSHYG 83
+A AG RG T TL PC +
Sbjct: 60 EAFRAAGRQRSYRGTTMVTTLSPCWYCS 87
>gi|126641614|ref|YP_001084598.1| putative deaminase [Acinetobacter baumannii ATCC 17978]
Length = 135
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 39 GIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCSHY 82
+IG G A G HAE+QA+ A E + AT YVTLEPC+
Sbjct: 4 NKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCTMC 57
>gi|81428680|ref|YP_395680.1| putative type II secretion/competence system, dCMP deaminase
ComEB-like [Lactobacillus sakei subsp. sakei 23K]
gi|78610322|emb|CAI55371.1| Putative bacterial type II secretion/competence system, DCMP
deaminase ComEB-like [Lactobacillus sakei subsp. sakei
23K]
Length = 162
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 25/100 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------Y 49
++ FM ++ S T V L++++ +I G
Sbjct: 7 PWNQYFMLQSVLLSMRS---TCPRLFVGALVIRNRRIIAGGYNGSVAHEDHCIDVGCLMR 63
Query: 50 GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE+ AL + G + GA YVT PC
Sbjct: 64 DGHCLRTIHAEMNALTQCAKFGVQTEGAEIYVTHFPCLQC 103
>gi|294155321|ref|YP_003559705.1| deoxycytidylate deaminase fusion protein [Mycoplasma crocodyli
MP145]
gi|291599901|gb|ADE19397.1| deoxycytidylate deaminase fusion protein [Mycoplasma crocodyli
MP145]
Length = 159
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 29/107 (27%)
Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTS-TNPSVACLIVK-DGIVIGRGVTA-YGGCP--- 53
M + ++D F + ++ + + V I+ + VIG G G
Sbjct: 1 MKNNINWDTYF----ISLAKISSLRSKDPSTQVGACIINSEKKVIGLGYNGMPNGNDKDF 56
Query: 54 ------------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAEV A+ + + A Y TL PC +
Sbjct: 57 PWGRDGQSQKETKYPYVVHAEVNAILNTTVQPKNAILYTTLFPCINC 103
>gi|198276422|ref|ZP_03208953.1| hypothetical protein BACPLE_02617 [Bacteroides plebeius DSM 17135]
gi|198270864|gb|EDY95134.1| hypothetical protein BACPLE_02617 [Bacteroides plebeius DSM 17135]
Length = 240
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEG 332
L + G+ +L++ GG + SFI + D + + + G +
Sbjct: 144 LTKLKALFGIETLMLGGGGVLNWSFIQAGYCDEVSILMAPAADGSRDTQTLFMTKEGLTA 203
Query: 333 YLEKNFMCVRRDYFGSD-VCLEYIG 356
+ F + GS V L Y
Sbjct: 204 DAAQGFRLIDVKALGSGTVWLRYKP 228
>gi|327198164|ref|YP_004306740.1| putative dCMP deaminase [Pseudomonas phage KPP10]
gi|297591690|dbj|BAJ09110.1| putative dCMP deaminase [Pseudomonas phage KPP10]
Length = 129
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 32/139 (23%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----------------PH 54
M A F+ VG+ + V +IV+ +I +G G H
Sbjct: 1 MRCAESFAECSVGVRAK---VGAVIVQGNKIISQGYNGLPGGLEGPLENEEGVTRPEVRH 57
Query: 55 AEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
AE A L + E A+GA + T+ PC ++ + + V
Sbjct: 58 AEKNALLWLSCSQESAQGAWMFATMSPC----------EYCAHDIVDAGIKRVYYRHQYR 107
Query: 112 SGRGLQWLSQKGIIVDRMM 130
G+ +L + G+ V M
Sbjct: 108 LTAGIDYLLKNGVEVIHMP 126
>gi|284041078|ref|YP_003391008.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
DSM 74]
gi|283820371|gb|ADB42209.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
DSM 74]
Length = 182
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + GG + +N+ L+D I+ + + +G GIP G +E F ++ + F
Sbjct: 108 KDIWLVGGGQLNTILLNAGLIDQFIITLAPVSLGA-GIPLF-GPGAVETQFKFIKSESF 164
>gi|163737476|ref|ZP_02144893.1| CMP/dCMP deaminase, zinc-binding protein [Phaeobacter
gallaeciensis BS107]
gi|161389002|gb|EDQ13354.1| CMP/dCMP deaminase, zinc-binding protein [Phaeobacter
gallaeciensis BS107]
Length = 147
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACL-IVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
M AL +R G V + I DG + R HAEV + EA
Sbjct: 1 MDIALTEARAAAARGEV----PVGAVLIAPDGQIAARAGNRTRELSDPTAHAEVLVIREA 56
Query: 64 G-----EEARGATAYVTLEPCSHY 82
E G YVTLEPC+
Sbjct: 57 CAVAGSERLNGHDLYVTLEPCAMC 80
>gi|302562655|ref|ZP_07314997.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
gi|302480273|gb|EFL43366.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
Length = 188
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 43/163 (26%), Gaps = 11/163 (6%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ +E + + S T P E +
Sbjct: 25 WSGPPSPELFQWWLEREQASGMSLYGRKL-WEAMSSFWPTGDEQPGATPAEIEFARNWRD 83
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLVDSII 312
K + +L+T + L + GGA +A + + + L+D
Sbjct: 84 TPKVVFSSTIDKVDWNTRLVTGDAIAEIRRLKAEDGGPMTIGGAKLAGAAMRAGLIDEYA 143
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ +++G G P N V F G V Y
Sbjct: 144 IVTHPVLVGG-GTPFFTALDGW-VNLDLVETRTFPGGVVLTRY 184
>gi|114569170|ref|YP_755850.1| tRNA-adenosine deaminase [Maricaulis maris MCS10]
gi|114339632|gb|ABI64912.1| tRNA-adenosine deaminase [Maricaulis maris MCS10]
Length = 174
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK--DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
+ +IV ++ + HAE+ AL EA G YVTLEP
Sbjct: 35 PIGAIIVDPATDSIVAQAHNRPIADHDPTAHAEILALREAAAKLGNYRLTGLELYVTLEP 94
Query: 79 CSHY 82
C+
Sbjct: 95 CAMC 98
>gi|332885013|gb|EGK05266.1| riboflavin biosynthesis protein RibD domain-containing protein
[Dysgonomonas mossii DSM 22836]
Length = 179
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + ++ I+ ++ + L+ + + + + GG + ++
Sbjct: 65 IYPYKDKISYIITRNKMNNPKEDIHFVSENIIEALSEIKKQEGKDIWIVGGGEIISMLLD 124
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
+ L+D +I+ +++G GIP E + + ++V +EY
Sbjct: 125 NDLIDEMIITIIPMMLGS-GIPLF-PNIAKELTWKLDNTHSYSNNVLQVEYHRD 176
>gi|312621259|ref|YP_004022872.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312201726|gb|ADQ45053.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 143
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----G 64
M + ++ S + VA IVK+G +I + HAE+ A+ +A
Sbjct: 7 MKTLIEYASR-----SNDIPVAAAIVKNGKIISIKRNDSKKAIYHAEILAIIDATSKLST 61
Query: 65 EEARGATAYVTLEPCSHY 82
++ R +VT EPC
Sbjct: 62 KDLRNCEMFVTKEPCPMC 79
>gi|116255371|ref|YP_771204.1| hypothetical protein pRL110171 [Rhizobium leguminosarum bv. viciae
3841]
gi|115260019|emb|CAK03117.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 235
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGY 333
L + G+ +++EGGAA + + S LVD + + + G S + +
Sbjct: 146 LAVVNREFGIERIVLEGGAATNGALLASGLVDELNFIVAPALEARSGTDSVVELGTDGLA 205
Query: 334 LEKNFMCVRRDYFG 347
+ + G
Sbjct: 206 GKVELSLIDCQQLG 219
>gi|291571887|dbj|BAI94159.1| putative cytidine/deoxycytidylate deaminase [Arthrospira
platensis NIES-39]
Length = 195
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
S+D F+ A + L V +IVKD ++ G + G H
Sbjct: 27 SWDEYFLMFAKLAATRSTCLAFP---VGAVIVKDRQILATGYNGSPSGSVH 74
>gi|328876450|gb|EGG24813.1| CMP/dCMP deaminase [Dictyostelium fasciculatum]
Length = 251
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVTAY--GGCPHAEVQALEEA 63
+M AL+ + N +IV + + GV H E+ A+
Sbjct: 61 HENWMKLALQI------TKAVNGRFGAVIVNENGTLACTGVNQGKINRINHGEIVAINNC 114
Query: 64 -----GEEARGATAYVTLEPCSHYGRSPP 87
G T Y T EPC +
Sbjct: 115 SNLYTKNMFEGWTLYTTGEPCPMCQAAIM 143
>gi|313898562|ref|ZP_07832099.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase family protein
[Clostridium sp. HGF2]
gi|312956944|gb|EFR38575.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase family protein
[Clostridium sp. HGF2]
Length = 226
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ V+I P L I+ + L + G + L V+
Sbjct: 95 RYFCQLSKEFVLITQNPAHP-AFLVKEDNLHIIMQDTLDLVGALEILKEDYGCSRLTVQS 153
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
G + F+ ++L+D I + + I+IG + ++ +
Sbjct: 154 GGTLNGLFLRNKLLDYIDIVVAPILIGGKDTATLIDGASI 193
>gi|261406813|ref|YP_003243054.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261283276|gb|ACX65247.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 176
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
G +AHS LVD LY +V+G G P V D G + + L
Sbjct: 116 AGPELAHSLTELGLVDEYRLYLHPVVLGH-GKPFFAGPR---PPLRLVASDRIGENVIRL 171
Query: 353 EYIG 356
Y+
Sbjct: 172 TYVP 175
>gi|170585310|ref|XP_001897427.1| tRNA-specific adenosine deaminase 2 [Brugia malayi]
gi|158595106|gb|EDP33679.1| tRNA-specific adenosine deaminase 2, putative [Brugia malayi]
Length = 192
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 19/97 (19%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
++ + F++ A + + N V C+ V +G + G + HAE
Sbjct: 6 KLNKEEVHFLNRAFEIAVDA---VANNEVPVGCVFVFEGQEVAFGRNDVNRSKNPTYHAE 62
Query: 57 VQAL-----------EEAGEEARGATAYVTLEPCSHY 82
+ AL E + R T YVTLEPC
Sbjct: 63 MVALEMMKQWCTDNGRELEDVMRCTTLYVTLEPCIMC 99
>gi|134081301|emb|CAK41804.1| unnamed protein product [Aspergillus niger]
Length = 259
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
+S A FM AL + T P V C++V D ++G G+
Sbjct: 13 NSEHAYFMKQALLMGEKAL-ETGETP-VGCVLVYDKKIVGFGMNDTN 57
>gi|39996672|ref|NP_952623.1| riboflavin biosynthesis protein RibD domain-containing protein
[Geobacter sulfurreducens PCA]
gi|39983553|gb|AAR34946.1| ribD domain protein [Geobacter sulfurreducens PCA]
gi|298505684|gb|ADI84407.1| RibD_C domain protein [Geobacter sulfurreducens KN400]
Length = 175
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
V + + + +L L+ G + GG +A SF+
Sbjct: 63 WPYEGKPCRVFSRQEHAVPTHDVVITDATPDDVLHSLLRNGCRRAWLVGGGVLAASFLQR 122
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
RL+ I+ +++G GIP + + ++ + G V + Y
Sbjct: 123 RLISEYIVSIVPVILGG-GIPM-ISPNRIRESLTLLETKVCTGGIVQVRYR 171
>gi|109706863|gb|ABG43006.1| cytosine deaminase [Candida glabrata]
Length = 155
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAEVQAL 60
+DA M A + P CLI KDG V+GRG G P H E+ L
Sbjct: 7 WDALGMKIAYEEAAKG-FEEGGVPIGGCLINNKDGTVLGRGHNMRFQKGSPTLHGEISTL 65
Query: 61 EEA----GEEARGATAYVTLEPCSHY 82
E G+ + T Y TL PC
Sbjct: 66 ENCGRLEGKVYKDTTLYTTLSPCDMC 91
>gi|67464318|pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
gi|67464319|pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 11 SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 70 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVIGENVNF---------KSK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155
>gi|67464322|pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
gi|67464323|pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 11 SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 70 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF---------KSK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155
>gi|13476818|ref|NP_108387.1| nitrogen fixation protein gene [Mesorhizobium loti MAFF303099]
gi|14027579|dbj|BAB53848.1| nitrogen fixation protein gene [Mesorhizobium loti MAFF303099]
Length = 149
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +I V+ + HAE+ + EA E G YVTLEPC+
Sbjct: 24 PVGAVIANGSTVVAKAGNRTRELADPTAHAEMLVIREACGKLSSERLTGHDLYVTLEPCA 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|118468323|ref|YP_890544.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium smegmatis str. MC2 155]
gi|118169610|gb|ABK70506.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium smegmatis str. MC2 155]
Length = 149
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY--GGCP--HAEVQALEEA-- 63
+ AAL +R + + ++ DG + R V G P HAE+ A+ A
Sbjct: 7 IRAALEAARTAGPR---DVPIGAVVYAADGTELARAVNVREAYGDPAGHAEIVAMRAAAK 63
Query: 64 ----GEEARGATAYVTLEPCSHY 82
G GAT VT+EPC+
Sbjct: 64 VLGDGWRLEGATLAVTVEPCTMC 86
>gi|255715725|ref|XP_002554144.1| KLTH0E15290p [Lachancea thermotolerans]
gi|238935526|emb|CAR23707.1| KLTH0E15290p [Lachancea thermotolerans]
Length = 152
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEV 57
+S +D M A + + + P CLI +DG V+G G H E+
Sbjct: 1 MSKWDGLGMEIAYKEAAKGMEE-GGVPIGGCLIDNRDGTVVGSGHNMRFQKGSATLHGEI 59
Query: 58 QALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
LE G + T Y TL PC + V G
Sbjct: 60 STLENCGRMKGSVYKNCTLYTTLSPCDMCTGAILLYGIPRCVVGENVNF---------KG 110
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L+++G V + + + K + ++ + +
Sbjct: 111 DGERYLAERGCEVRVVDDEKCKKIMKQFIDERPQDW 146
>gi|284929670|ref|YP_003422192.1| deoxycytidylate deaminase [cyanobacterium UCYN-A]
gi|284810114|gb|ADB95811.1| deoxycytidylate deaminase [cyanobacterium UCYN-A]
Length = 184
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
+++ FM A + L V +IVKD V+ G
Sbjct: 10 TWNEYFMMMAKLAATRSTCLAFP---VGAVIVKDKRVLSTGYNGPP 52
>gi|83591989|ref|YP_425741.1| tRNA-adenosine deaminase [Rhodospirillum rubrum ATCC 11170]
gi|83574903|gb|ABC21454.1| tRNA-adenosine deaminase [Rhodospirillum rubrum ATCC 11170]
Length = 159
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 30 SVACLIVK-DGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V +I G + R T + HAE+ A+ A T +VTLEPC
Sbjct: 34 PVGAVITDAGGRPLAACANRTETDHDPTAHAEILAIRAACARRGDARLPDCTLWVTLEPC 93
Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
P CA I+ + RV+ DP G++ + G
Sbjct: 94 ------PMCASAIVHARLARVIFGAYDPKGGAVDHGVRLFAHPGC 132
>gi|313204838|ref|YP_004043495.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
gi|312444154|gb|ADQ80510.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
Length = 255
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 56/212 (26%), Gaps = 14/212 (6%)
Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218
+D S+ F + L+ + + + +
Sbjct: 41 DEDWKYFDKTVKSLHEIDFYLEGSNMLISDIDKIKELPEYSGNRELLYQDYLPEKIINRE 100
Query: 219 PMRI---ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
R ++D + K +I +T + P LAF ++ ++
Sbjct: 101 GRRTWTSVVDGRGRFRNGYKAYFDNPETYMIHLTSYNAPQEYLAFLQREEIPYIITGKEK 160
Query: 276 KKLLTILVGR----GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
L V +L G +A + I L+D I + S + G P
Sbjct: 161 VNLTESFDKLYNILNVKCILTTSGGKLAGALIRENLLDEINILFSPSIYGGFQTPILFNS 220
Query: 332 GY------LEKNFMCVRRDYFGSD-VCLEYIG 356
L + F S + + Y
Sbjct: 221 PDIEVPKILPNKLRYIESHVFDSGSIWVRYEV 252
>gi|226304955|ref|YP_002764913.1| deaminase [Rhodococcus erythropolis PR4]
gi|226184070|dbj|BAH32174.1| putative deaminase [Rhodococcus erythropolis PR4]
Length = 121
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 3 VSSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAE 56
S DA +S AL +R +G + ++ D V+GR T G HA+
Sbjct: 2 FSPRDA--LSLALDVAREGMELGE----MPIGAVVFDDDRVLGRAYTQERALGRRVVHAD 55
Query: 57 VQALEEAGEEA------RGATAYVTLEPCSHY 82
+QA+ +A E T V LEPC
Sbjct: 56 LQAILQADEALGFTRASGELTLAVNLEPCLMC 87
>gi|127511710|ref|YP_001092907.1| deaminase-reductase domain-containing protein [Shewanella loihica
PV-4]
gi|126637005|gb|ABO22648.1| bifunctional deaminase-reductase domain protein [Shewanella loihica
PV-4]
Length = 178
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L +G L ++GG + +F+ L+D +++ R I++G G+P E
Sbjct: 98 DIIADLNAKGFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGG-GVPLF-GELESSL 154
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
+F ++ + + Y K
Sbjct: 155 SFNVIKSEVVLDSLTQTTYHRKR 177
>gi|110637702|ref|YP_677909.1| dihydrofolate reductase family protein [Cytophaga hutchinsonii ATCC
33406]
gi|110280383|gb|ABG58569.1| dihydrofolate reductase family protein [Cytophaga hutchinsonii ATCC
33406]
Length = 176
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
DLK L+ L ++ +GGA + + L+D I+ I++G G
Sbjct: 88 FYTDDLKSLVNKLKSENGKNIFCDGGAEIVSELLKDDLIDEFIISVIPILVGNGTK--LF 145
Query: 330 EEGYLEKNFMCVRRDYFGSDV-CLEYIGKN 358
++G E+ + F + L Y +
Sbjct: 146 KDGRPEQILELISTKQFEKGLTQLHYKRAD 175
>gi|284051814|ref|ZP_06382024.1| CMP/dCMP deaminase zinc-binding protein [Arthrospira platensis
str. Paraca]
Length = 127
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
S+D F+ A + L V +IVKD ++ G + G H
Sbjct: 27 SWDEYFLMFAKLAATRSTCLAFP---VGAVIVKDRQILATGYNGSPSGSVH 74
>gi|317182710|dbj|BAJ60494.1| riboflavin biosynthesis protein [Helicobacter pylori F57]
Length = 344
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 86/308 (27%), Gaps = 15/308 (4%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
+ L + H L NPSVAC ++ K ++ PHAEV A + A + R
Sbjct: 8 LEICLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRP 67
Query: 70 A---TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ +P + + + + + + + K V
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186
E +++ I + S +N + N L
Sbjct: 128 VIATEENEAKKGGLAR----LQKARIEGIVCESLENKAKDLLLPFRIMEQKGRFNLFKLA 183
Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
+ G T T + + + LD++ +
Sbjct: 184 LRMNGDYCHGKITGQKS-VIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNP 242
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ + + + + K + + +G +EGG + S +
Sbjct: 243 NIAILSKHPIDPNSKVFSAPNRLVNAFYDPK--DLPLEKGFN--FIEGGWELFESLRDK- 297
Query: 307 LVDSIILY 314
+D+++L+
Sbjct: 298 -IDALLLH 304
>gi|258651669|ref|YP_003200825.1| cytosine deaminase [Nakamurella multipartita DSM 44233]
gi|258554894|gb|ACV77836.1| Cytosine deaminase [Nakamurella multipartita DSM 44233]
Length = 153
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 12/154 (7%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAE 56
M + DA +++AA+R +R + + ++ DG V+ G G H E
Sbjct: 1 MSGTPGDADYLAAAVRAARQGLAEGGI--PIGAALIVDGGVLATGWNKRVQLGSAIRHGE 58
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
LE AG AT Y + C I+ I RV+V + G
Sbjct: 59 TDCLENAGRLP--ATVYARSVMVTTLSPCDMCTGAILLYKIPRVIVGENQTFYG----GE 112
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
+ L +G+ V + + E + A++ + +
Sbjct: 113 ELLRARGVEVTVLDDPECVAMMTAFIADRPSLWN 146
>gi|284034352|ref|YP_003384283.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283813645|gb|ADB35484.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 194
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LV + + + LVD + L +V+G G ++ +R G
Sbjct: 122 DILVYASRQLGRTLLEHNLVDELRLMLFPVVLGSGRR--LFDDTSATTPLRLLRHRTIGD 179
Query: 349 DV-CLEYIGK 357
++ L Y +
Sbjct: 180 NLTLLTYRPE 189
>gi|86355952|ref|YP_467844.1| putative reductase protein [Rhizobium etli CFN 42]
gi|86280054|gb|ABC89117.1| putative reductase protein [Rhizobium etli CFN 42]
Length = 176
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ R + + + E D
Sbjct: 15 YVDHMAFGPSPTLFRHFVESTRRQAGSVYGRQMYEIMRYWDDDHSEWNADERDFAAAWRN 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG-------GAAVAHSFINSRLVDSII 312
K ++ +L+ +G + L EG G +A S + L+D I
Sbjct: 75 QPKWVVSRSLKSVGSNARLVEGDLGSAIRKLKAEGDGEIEVAGPDLARSLTDLGLIDEYI 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+Y +V+G G P + D D + L Y+
Sbjct: 135 IYLHPVVLGH-GTPYFAGPR---PRLRLIANDKIDEDVIRLVYVP 175
>gi|237748443|ref|ZP_04578923.1| CMP/dCMP deaminase [Oxalobacter formigenes OXCC13]
gi|229379805|gb|EEO29896.1| CMP/dCMP deaminase [Oxalobacter formigenes OXCC13]
Length = 164
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 28/109 (25%), Gaps = 43/109 (39%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53
M+ A+ V +IV+D +I G G P
Sbjct: 1 MNIAIAVRENANCKGRK---VGAVIVRDNRIISTGY---NGTPEGFTNCMDGGCVRCGKR 54
Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE AL A G + + TL PC
Sbjct: 55 EEYRREGKRGYDECICVHAEQNALISAARFGNAIEDSVIFSTLRPCFDC 103
>gi|169627158|ref|YP_001700807.1| cytidine/deoxycytidylate deaminase [Mycobacterium abscessus ATCC
19977]
gi|169239125|emb|CAM60153.1| Probable cytidine/deoxycytidylate deaminase [Mycobacterium
abscessus]
Length = 166
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64
F + +R +V A +IVKDG V+ HAE+ A+ EA
Sbjct: 3 FAQRTIDLARRNVEEGGR--PFATIIVKDGAVLAESPNRVAQTNDPTAHAEILAIREACT 60
Query: 65 ----EEARGATAYVTLEPCSHY 82
E G+T ++ PC
Sbjct: 61 RLGTEHLAGSTIFILALPCPMC 82
>gi|294632040|ref|ZP_06710600.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
gi|292835373|gb|EFF93722.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
Length = 272
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNF 338
L G G T LL EGG + + S ++D + L S ++ G+ + + + F
Sbjct: 194 KALAGLGHTRLLTEGGPRLLGQLVASEVLDELCLTVSPMLTAGDAQRIAGGPSVAVPRRF 253
Query: 339 MCVRRDYFGSDVCLEYIG 356
+ Y
Sbjct: 254 ALASVLEEEGFLFTSYRR 271
>gi|254466662|ref|ZP_05080073.1| guanine deaminase [Rhodobacterales bacterium Y4I]
gi|206687570|gb|EDZ48052.1| guanine deaminase [Rhodobacterales bacterium Y4I]
Length = 164
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMS--AALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVT----AYGGCPHAEVQAL 60
R M AL +R G + ++ DG V+G GV + HAEV A+
Sbjct: 12 ERLMQDVVALSEARVAEGGV----PFSAQVVSADGRVLGAGVNTVMEDHDPTAHAEVCAI 67
Query: 61 EEAGEE-----ARGATAYVTLEPCSHY 82
+A G + EPC+
Sbjct: 68 RDACARHGRTNLAGTVLLASGEPCALC 94
>gi|209524445|ref|ZP_03272994.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
gi|209495236|gb|EDZ95542.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328]
Length = 195
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
++D F+ A + L V +IVKD ++ G + G H
Sbjct: 27 TWDEYFLMFAKLAATRSTCLAFP---VGAVIVKDRQILATGYNGSPSGSVH 74
>gi|162135105|ref|YP_001595846.1| hypothetical protein [Pseudomonas phage YuA]
gi|161513952|emb|CAO77778.1| hypothetical protein [Pseudomonas phage YuA]
Length = 153
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------- 53
+ +D R++ A + W + V ++V+ + V G +
Sbjct: 6 TKWDRRYVGLAQHVAGWSK---DPSTKVGAVLVRPNNSVASTGFNGFPPGHDDSPELYAD 62
Query: 54 ---------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAEV AL G A G T Y + C +
Sbjct: 63 RGYKYQHVVHAEVNALNFLGSPATGFTLYTSFPCCPNC 100
>gi|332668415|ref|YP_004451203.1| bifunctional deaminase-reductase domain-containing protein
[Haliscomenobacter hydrossis DSM 1100]
gi|332337229|gb|AEE54330.1| bifunctional deaminase-reductase domain protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 179
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ +GG V ++ + L+D +I+ I++G G+P + G E+ V F
Sbjct: 109 KNIYCDGGGEVVNALLQDELIDELIISIIPILVG-RGVPLF-KNGRPEQKLKLVSSKAFD 166
Query: 348 SDVC-LEYIG 356
+ L Y+
Sbjct: 167 KGLVQLHYVK 176
>gi|241207248|ref|YP_002978344.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240861138|gb|ACS58805.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 176
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 12/129 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-- 293
+ P + K ++ L+ + + L E
Sbjct: 51 MRYWDDEHPEWDAERQAFATAWRSQPKWVVSRSLASVGPKATLVGEDLEAAIRELKAERD 110
Query: 294 -----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
G +A S L+D +Y +V+G G P + D G
Sbjct: 111 GEIEVAGPNLAQSLTELGLIDEYRIYLHPVVLGH-GKPYFAGPR---PPLHLMAHDRIGE 166
Query: 349 D-VCLEYIG 356
D + L Y+
Sbjct: 167 DVIRLTYVP 175
>gi|78063661|ref|YP_373569.1| cytidine/deoxycytidylate deaminase [Burkholderia sp. 383]
gi|77971546|gb|ABB12925.1| Cytidine/deoxycytidylate deaminase [Burkholderia sp. 383]
Length = 155
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-----GVTAYGGCPHAEVQALEEAG 64
F+ + + +V A +IV+DG ++ T+ HAE+ A+ +A
Sbjct: 3 FVKRTIDLAMKNVEEGGR--PFATVIVRDGEIVAESPNLVAQTS-DPTAHAEILAVRDAC 59
Query: 65 EE-----ARGATAYVTLEPCSHY 82
+ Y+ PC
Sbjct: 60 RKLGTEHLTDCEIYILASPCPMC 82
>gi|299470564|emb|CBN78552.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 258
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 27/149 (18%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
L S L E + A F + + D+ L L G SL
Sbjct: 99 DLSSPDAWRWLAEWAQRSREGSEDRAANDFVIVHSPLQADGRCDVGDCLEKLYSMGFRSL 158
Query: 291 LVEGGAAVAHSFIN-----------------SRLVDSIILYRSQIVI---------GEG- 323
+VEGGA V SF+ +LVD +++ + + + G
Sbjct: 159 MVEGGATVISSFLRGCGEEMARDEEFGRNPDGQLVDRVVVTIAPMFLQGYNVLATEGNAC 218
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
G + + V G D+ +
Sbjct: 219 GARTTSPGAGFPLPLLDVGFVRLGQDLVV 247
>gi|224002957|ref|XP_002291150.1| hypothetical protein THAPSDRAFT_34714 [Thalassiosira pseudonana
CCMP1335]
gi|220972926|gb|EED91257.1| hypothetical protein THAPSDRAFT_34714 [Thalassiosira pseudonana
CCMP1335]
Length = 171
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 36/104 (34%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-------------DG-------IVIGRGV-- 46
M AL+ ++ G + +IV+ + ++ R
Sbjct: 1 MELALQEAQNAWDKGEV----PIGAVIVRELLSNATAGSTVMNNLHATRSFQILSRAHNL 56
Query: 47 --TAYGGCPHAEVQALEEAGEEAR------GATAYVTLEPCSHY 82
T HAE+ AL + + + +T Y TLEPC
Sbjct: 57 VETNIDASSHAELLALRQGSTKMQNWRFPPNSTLYTTLEPCPMC 100
>gi|190889961|ref|YP_001976503.1| riboflavin biosynthesis reductase [Rhizobium etli CIAT 652]
gi|190695240|gb|ACE89325.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
CIAT 652]
Length = 176
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 42/165 (25%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ R + + + P E D
Sbjct: 15 YVDHMAFGPSPTLFRHFVESTRRQAGSVYGRQMYEIMRYWDDDHPEWNADERDFAAAWRN 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG-------GAAVAHSFINSRLVDSII 312
K ++ L+ + + L EG G +A S + L+D I
Sbjct: 75 QPKWVVSRSLKSVGPNASLVEGDLESAIRKLKAEGHGEIEAAGPDLARSLTDLGLIDEYI 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+Y +V+G G P + D + + L Y+
Sbjct: 135 IYLHPVVLGH-GKPYFTGPR---PPLRLIANDRIDENVIRLVYVP 175
>gi|170289094|ref|YP_001739332.1| dihydrofolate reductase-like protein [Thermotoga sp. RQ2]
gi|170176597|gb|ACB09649.1| dihydrofolate reductase-like protein [Thermotoga sp. RQ2]
Length = 169
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L G+G + V GG V F+ +LVD + + V G+ GIP +E
Sbjct: 85 DVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGK-GIP-FFDEFEGYF 142
Query: 337 NFMCVRRDYFGS--DVCLEYIGKN 358
+ + L+Y +
Sbjct: 143 PLKLLEMRRLNERGTLFLKYSVEK 166
>gi|7546295|pdb|1CZ3|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
gi|7546296|pdb|1CZ3|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
gi|7546297|pdb|1D1G|A Chain A, Dihydrofolate Reductase From Thermotoga Maritima
gi|7546298|pdb|1D1G|B Chain B, Dihydrofolate Reductase From Thermotoga Maritima
Length = 168
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L G+G + V GG V F+ +LVD + + V G+ GIP +E
Sbjct: 84 DVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGK-GIP-FFDEFEGYF 141
Query: 337 NFMCVRRDYFGS--DVCLEYIGKN 358
+ + L+Y +
Sbjct: 142 PLKLLEMRRLNERGTLFLKYSVEK 165
>gi|2842628|sp|Q60034|DYR_THEMA RecName: Full=Dihydrofolate reductase; Short=DHFR
gi|1835266|emb|CAA71903.1| dihydrofolate reductase [Thermotoga maritima MSB8]
gi|2582824|emb|CAA57437.1| dihydrofolate reductase [Thermotoga maritima MSB8]
Length = 169
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L G+G + V GG V F+ +LVD + + V G+ GIP +E
Sbjct: 85 DVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGK-GIP-FFDEFEGYF 142
Query: 337 NFMCVRRDYFGS--DVCLEYIGKN 358
+ + L+Y +
Sbjct: 143 PLKLLEMRRLNERGTLFLKYSVEK 166
>gi|15644389|ref|NP_229441.1| dihydrofolate reductase [Thermotoga maritima MSB8]
gi|4982214|gb|AAD36708.1|AE001806_18 dihydrofolate reductase [Thermotoga maritima MSB8]
Length = 172
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L G+G + V GG V F+ +LVD + + V G+ GIP +E
Sbjct: 88 DVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGK-GIP-FFDEFEGYF 145
Query: 337 NFMCVRRDYFGS--DVCLEYIGKN 358
+ + L+Y +
Sbjct: 146 PLKLLEMRRLNERGTLFLKYSVEK 169
>gi|227824910|ref|ZP_03989742.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
gi|226905409|gb|EEH91327.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21]
Length = 240
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341
G++ + + GG +F+ L+D + L + E G S F+
Sbjct: 162 GISRIALSGGGLTNGTFLREGLIDELSLVIVPVAEMEKGATSFEAMDGAPLLKNPAFILK 221
Query: 342 RRDYFGSD-VCLEYIGKN 358
+ D + + Y N
Sbjct: 222 GVEVLAKDALWIRYERVN 239
>gi|311898892|dbj|BAJ31300.1| hypothetical protein KSE_55250 [Kitasatospora setae KM-6054]
Length = 262
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMC 340
GRG L EGG + L+D + L + ++ G P + + +
Sbjct: 170 AGRGWRRQLTEGGPRLLAQLAADGLLDELCLSVAP-LVTAGDSPRIVNGPGIPDVRPMRL 228
Query: 341 VRRDYFGSDVCLEYIGK 357
V + Y+
Sbjct: 229 VSLIEEKGFLFTRYLRP 245
>gi|255535342|ref|YP_003095713.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
bacterium 3519-10]
gi|255341538|gb|ACU07651.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
bacterium 3519-10]
Length = 177
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+ L+ L ++ +GGA V + + L+D++I+ +++G G
Sbjct: 90 FYTGKIDDLVKQLKSEKGENIYCDGGAEVINELLKHDLIDNLIISVIPVLLGNGTR--LF 147
Query: 330 EEGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
++G E+ + F + L Y K
Sbjct: 148 KDGRPEQILEFIEAKTFEPGLIQLHYERKK 177
>gi|284990702|ref|YP_003409256.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063947|gb|ADB74885.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 177
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + + GG +A F + L+D +++ + + +G G L + R +
Sbjct: 109 GDRDVWIVGGGDLAGQFADHGLLDEVVVAIAPVTLGGGA-------PLLPRRLELTRTEE 161
Query: 346 F--GSDVCLEY 354
G VC+ Y
Sbjct: 162 AVNGEFVCVRY 172
>gi|108563832|ref|YP_628148.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
gi|107837605|gb|ABF85474.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1]
Length = 344
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 86/241 (35%), Gaps = 36/241 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68
+ L + + L NPSVAC ++ K+ ++ PHAEV A + A + R
Sbjct: 8 LEMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRP 67
Query: 69 ----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+TLEPC+ YG++P C++ + +RV
Sbjct: 68 SLKNDLEKLEDPKTLSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAKKG--GLARLQKAHIETMICRNLENKAKDLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D ++V T+ D+P L R +
Sbjct: 185 RMNGDYYHG---KITGPKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKN 241
Query: 221 R 221
Sbjct: 242 P 242
>gi|308177537|ref|YP_003916943.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307745000|emb|CBT75972.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 186
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI--GEGGIPSPLEEGYLE 335
L I G+ ++ V GG + F+++ +D + L + + + G +P +
Sbjct: 106 LPEIRGTAGLKNIWVLGGGELLGQFLDAGAIDILALTIAPVALARGTELLPRNIG----S 161
Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
+ V+ G L Y +
Sbjct: 162 ERLELVQAHKAGPFARLVYRVHD 184
>gi|50305461|ref|XP_452690.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641823|emb|CAH01541.1| KLLA0C10989p [Kluyveromyces lactis]
Length = 238
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQ 58
S D M A+ +++ + VAC+ V VI G+ G HAE
Sbjct: 2 SQDLLHMRTAITLAKYALD--HEETPVACIFVHSKLNKVIAYGMNGTNESISGISHAEFM 59
Query: 59 ALEEAGEE-------ARGATAYVTLEPCSHY 82
+++ E+ YVT+EPC
Sbjct: 60 GIKQIQEKYGTDPKILSEVVLYVTVEPCIMC 90
>gi|329765297|ref|ZP_08256877.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138203|gb|EGG42459.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 31/121 (25%), Gaps = 47/121 (38%)
Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53
++D FM A ++ +T V +IV+ + G G P
Sbjct: 21 NWDEYFMLQA-ELAKLRSNCMTR---QVGAVIVRKNRQLATGY---NGTPPGIKNCFEGG 73
Query: 54 ------------------------HAEVQALEEAGEE-----ARGATAYVTLEPCSHYGR 84
HAE A+ GA Y T PC +
Sbjct: 74 CRRCQLRMEGKIESGASLDRCLCNHAEANAIMHCAILGIEAGIAGAILYTTFVPCLECTK 133
Query: 85 S 85
Sbjct: 134 M 134
>gi|319941545|ref|ZP_08015871.1| hypothetical protein HMPREF9464_01090 [Sutterella wadsworthensis
3_1_45B]
gi|319804915|gb|EFW01757.1| hypothetical protein HMPREF9464_01090 [Sutterella wadsworthensis
3_1_45B]
Length = 241
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLE 335
L + GV LL+EGG + SF+ + L+ I + V G G E
Sbjct: 151 ALAALEETFGVKRLLLEGGGVLNGSFLAAGLIKEISVLVCPTVDGRSESAKLFSWAGSEE 210
Query: 336 K------NFMCVRRDYFGSD-VCLEYIG 356
+ + + V L Y+
Sbjct: 211 LSPAEGVRLKLLEAEPLANGVVWLHYLN 238
>gi|296271485|ref|YP_003654117.1| CMP/dCMP deaminase zinc-binding protein [Thermobispora bispora
DSM 43833]
gi|296094272|gb|ADG90224.1| CMP/dCMP deaminase zinc-binding protein [Thermobispora bispora
DSM 43833]
Length = 152
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL + G P V +++ DG V+ HAEV AL A
Sbjct: 9 MRLALAEAVRA-GERGEVP-VGAVVLGPDGTVLAAAGNDREASGDPTAHAEVLALRAAAR 66
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 67 ALGTWRLSGCTLVVTLEPCTMC 88
>gi|226288486|gb|EEH43998.1| tRNA-specific adenosine deaminase [Paracoccidioides brasiliensis
Pb18]
Length = 164
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 7 DARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRG 45
FM AL + G T V C++V + +IG
Sbjct: 17 HEYFMRKALDMGEEALASGET----PVGCVLVHNEEIIGSA 53
>gi|183985263|ref|YP_001853554.1| cytidine/deoxycytidylate deaminase [Mycobacterium marinum M]
gi|183178589|gb|ACC43699.1| cytidine/deoxycytidylate deaminase [Mycobacterium marinum M]
Length = 152
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ +++ DG + R V A HAE+ AL A G GAT VT+EP
Sbjct: 24 PIGAVVISADGTELARAVNAREELGDPTAHAEILALRAAARVLGDGWRLEGATLAVTVEP 83
Query: 79 CSHY 82
C+
Sbjct: 84 CTMC 87
>gi|206562263|ref|YP_002233026.1| guanine deaminase [Burkholderia cenocepacia J2315]
gi|198038303|emb|CAR54258.1| guanine deaminase [Burkholderia cenocepacia J2315]
Length = 155
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-----GVTAYGGCPHAEVQALEEAG 64
F+ + + +V A +IV+DG ++ T+ HAE+ A+ +A
Sbjct: 3 FVKRTIDLAMKNVEEGGR--PFATVIVRDGEIVAESPNLVAQTS-DPTAHAEILAVRDAC 59
Query: 65 -----EEARGATAYVTLEPCSHY 82
E Y+ PC
Sbjct: 60 RTLGTEHLTDCEIYILASPCPMC 82
>gi|299143279|ref|ZP_07036359.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
sp. oral taxon 386 str. F0131]
gi|298517764|gb|EFI41503.1| cytidine/deoxycytidylate deaminase family protein [Peptoniphilus
sp. oral taxon 386 str. F0131]
Length = 143
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT-AYGGCP--------- 53
S++ FM + + V C+IV KD ++ G + G P
Sbjct: 4 SWNEYFMEITEMVAIRSTCDRAF---VGCVIVNKDHRIVSTGYNGSLAGNPQCDEIGHTM 60
Query: 54 ---------HAEVQAL---EEAGEEARGATAYVTLEPCSHY 82
HAE+ AL + G + AYVT PC +
Sbjct: 61 RDGHCIATIHAEMNALLYCAKEGIPVKDCVAYVTHFPCLNC 101
>gi|325262234|ref|ZP_08128972.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
sp. D5]
gi|324033688|gb|EGB94965.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
sp. D5]
Length = 175
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
L+P V E+ D + + I + KL+ L + + + G
Sbjct: 55 YHQIATELSPDQWVYEDLDSYVITHHTIPSSPKIKFVNENPCKLVEGLTKKEGKDIWICG 114
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + + ++D + ++G+G E+ +R + + Y
Sbjct: 115 GANIVDQLMQGDMIDRFYISVIPTILGDGIR--LFGTLDFERKLKLIRTRDYDGITEIVY 172
Query: 355 IG 356
Sbjct: 173 DR 174
>gi|256827881|ref|YP_003156609.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
4028]
gi|256577057|gb|ACU88193.1| CMP/dCMP deaminase zinc-binding [Desulfomicrobium baculatum DSM
4028]
Length = 153
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 31/108 (28%), Gaps = 33/108 (30%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------AYGG 51
FMS A + L V L VKD ++ G G
Sbjct: 9 QYFMSIAYLVAERSTCLRRK---VGALAVKDKRILATGYNGAPAGLTHCLDLGCMREKLG 65
Query: 52 CP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
P HAE + +A G GA + T +PC +
Sbjct: 66 IPSGQRHELCRALHAEQNVIIQAAIHGVGIEGADIFCTTQPCILCAKM 113
>gi|299140417|ref|ZP_07033573.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298597601|gb|EFI53783.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 190
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 12/167 (7%)
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+ + +R + + + + E++
Sbjct: 15 YVDHDHEKFVPRPALFRHFIEDVRGLSGMVYGRRMYQIMRYWDEDHANWGAEEHEYAAAW 74
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLV----EGGAAVAHSFINSRLVDS 310
+ K ++ L+ + RG+ + LV GG +A + + L+D
Sbjct: 75 RSQPKWVVSRSLKSAGPNATLVADDIDALIRGLKAQLVGEIEAGGPDLAGALTDLGLIDE 134
Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
LY +V+G G P + V + D + L Y
Sbjct: 135 YRLYLHPVVLGS-GKPFFSGPL---PSLRLVANELIAEDVIRLTYAP 177
>gi|318058022|ref|ZP_07976745.1| zinc-binding protein [Streptomyces sp. SA3_actG]
gi|318076299|ref|ZP_07983631.1| zinc-binding protein [Streptomyces sp. SA3_actF]
Length = 151
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHA 55
M + ++ A+ +R + + + DG ++GRG H
Sbjct: 1 MLTTEQAQEWLRPAVEEARQGLAEGGV--PIGAALYGADGALLGRGHNRRVQDADPSSHG 58
Query: 56 EVQALEEAGEE--ARGATAYVTLEPCSHYG 83
E A +AG + RG T TL PC +
Sbjct: 59 ETDAFRKAGRQRTYRGTTMVTTLSPCWYCS 88
>gi|226941431|ref|YP_002796505.1| CumB [Laribacter hongkongensis HLHK9]
gi|226716358|gb|ACO75496.1| CumB [Laribacter hongkongensis HLHK9]
Length = 171
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64
M A+ ++ G V L+V +G VIGRG A G HAE+ AL A
Sbjct: 1 MRQAILLAQEAAAAGEV----PVGALVVLEGKVIGRGANAPIGRHDPTAHAEIAALRAAA 56
Query: 65 E-----EARGATAYVTLEPCSHY 82
E GA YVTLEPC+
Sbjct: 57 ERAGNYRLPGAELYVTLEPCAMC 79
>gi|284048049|ref|YP_003398388.1| bifunctional deaminase-reductase domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952270|gb|ADB47073.1| bifunctional deaminase-reductase domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 264
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFM 339
V S+++ GGA + S + + LVD + L + G + P F
Sbjct: 162 LHVDSVMLGGGAVLNWSMVQAGLVDELSLVMAPAADGSTETQTLFMAKPGITTDQPVLFK 221
Query: 340 CVRRDYFGSD-VCLEY-IGKNL 359
+ D + + Y +GK +
Sbjct: 222 PLEVKIMPDDAIWIRYQVGKKV 243
>gi|83952775|ref|ZP_00961505.1| cytidine and deoxycytidylate deaminase family protein
[Roseovarius nubinhibens ISM]
gi|83835910|gb|EAP75209.1| cytidine and deoxycytidylate deaminase family protein
[Roseovarius nubinhibens ISM]
Length = 151
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIG-RGVTAYGG---CPHAEVQALEEA 63
M AL +R G V ++V DG VI G G HAE+ +
Sbjct: 1 MDRALDEARAAAARGEV----PVGAVLVGPDGAVIAADGNRTRAGHDPTAHAEMLVIRAG 56
Query: 64 G-----EEARGATAYVTLEPC 79
E G YVTLEPC
Sbjct: 57 CAVLGVERLTGCDLYVTLEPC 77
>gi|323306816|gb|EGA60101.1| Fcy1p [Saccharomyces cerevisiae FostersO]
Length = 158
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 8 SKWDQKGMDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 66
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + +
Sbjct: 67 TLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENXNF---------KSK 117
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 118 GEKYLQTRGHEVVVVDDERCKKIMKQFIDERPQDW 152
>gi|116250356|ref|YP_766194.1| RibD family protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255004|emb|CAK06078.1| putative RibD family protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 185
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + + + + D LT L ++L+
Sbjct: 61 AYWPTAEGEGEIKAYMNSIAKIAVSRTMSEPGWNNARVVSDPIPELTRLKQEDGKAILIF 120
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A +A S + + L+D I + +++G G E + G + L
Sbjct: 121 GSAELADSLLKAGLIDEIRVCLVPVILGGGNPLFKPAESQMPLKL-IESSTTEGGAMILR 179
Query: 354 YIG 356
Y
Sbjct: 180 YEP 182
>gi|255034628|ref|YP_003085249.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254947384|gb|ACT92084.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 194
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
++V GGA + I LVD + L+ + ++G+G
Sbjct: 121 DIIVYGGATFVSALIKEGLVDELHLFINPSILGKG 155
>gi|116073891|ref|ZP_01471153.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9916]
gi|116069196|gb|EAU74948.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9916]
Length = 219
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 13/217 (5%)
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--- 211
+AVS D + G G + G + + A +D L+G GT+ A R
Sbjct: 1 MLAVSLDGRLAFPGGGPAQLGGAGDRQVLEQALAWADGCLMGAGTLRAHHCTCLIRDSGL 60
Query: 212 ---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ SP + P+ + + A + +
Sbjct: 61 LEERAKAQRSPQPTACVVSRSATPTFPEEWPFFQQPLERWLLHGEEAAAPSAAPAGFSQR 120
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
++ LT L +G+ L++ GGA++ S + VD + L + V+G P
Sbjct: 121 LAMGATWQETLTQLTAQGMQRLVLLGGASLVASCLQDDAVDDLQLTLTPRVVGGEHSWVP 180
Query: 329 LEEGYLEKN------FMCVRRDYFGSD-VCLEYIGKN 358
+ L + ++ + D + + Y +
Sbjct: 181 FDAAGLPPSLASSDAWILQGAERLQEDELVVRYQRRR 217
>gi|119715511|ref|YP_922476.1| deaminase-reductase domain-containing protein [Nocardioides sp.
JS614]
gi|119536172|gb|ABL80789.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
JS614]
Length = 219
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 28/109 (25%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
L + + + +
Sbjct: 76 MGAAMFGLHSFPDDPDWQGWWGDRPPFGCPVYVLTHTAPRPSIRMEGGTTFHFRSTAIEE 135
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L + G + + V GG A F+ + LVD + + + I++G G
Sbjct: 136 VLAEAVEAAGGSDVRVGGGVGTARDFLRAGLVDRLHVAIAPILVGGGAR 184
>gi|308048147|ref|YP_003911713.1| bifunctional deaminase-reductase domain protein [Ferrimonas
balearica DSM 9799]
gi|307630337|gb|ADN74639.1| bifunctional deaminase-reductase domain protein [Ferrimonas
balearica DSM 9799]
Length = 182
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L G L ++GG + F+ LVD +I+ + +V+G G+P +
Sbjct: 103 EMMATLAQMGHRHLYLDGGNTI-QRFMAQGLVDELIISQIPVVLGG-GVPLF-GALPTMQ 159
Query: 337 NFMCVRRD-YFGSDVCLEYIG 356
++ V + G+ V Y
Sbjct: 160 SYELVSSEVMLGAMVKSHYRR 180
>gi|302534476|ref|ZP_07286818.1| predicted protein [Streptomyces sp. C]
gi|302443371|gb|EFL15187.1| predicted protein [Streptomyces sp. C]
Length = 225
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 20/89 (22%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG-------------GCP--HA 55
L + + +V ++ G+V+ RG G P HA
Sbjct: 21 RRVLELAYEALAAGGL--AVGAVLTDPAGVVLARGRNEAYESPGEGTGTGPLRGTPLAHA 78
Query: 56 EVQALEEA--GEEARGATAYVTLEPCSHY 82
E+ AL A G + AT + T EPC+
Sbjct: 79 EMNALGAARTGWDLGSATLWSTQEPCAMC 107
>gi|227503496|ref|ZP_03933545.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
accolens ATCC 49725]
gi|227075999|gb|EEI13962.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
accolens ATCC 49725]
Length = 232
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 12/192 (6%)
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233
+ LR +D + VG TV + + + K D
Sbjct: 38 MGNDTDGKLFQALRGWADVVFVGGQTVR-SEDYSGVEQHSPDSPPAPIAVPTQSLKFEPD 96
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKN-----INIIYCDCRDLKKLLTILVGRGVT 288
SK + AP+ +V ++ RK +I ++ L IL RG
Sbjct: 97 SKFLTHFTTAPLFLVPHAALQNPEVSARKGPLEAAGAEVIDAGEGTMQDYLRILRKRGFQ 156
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+L EGG + ++ +D + L + G+ P+ + + + + +
Sbjct: 157 RILCEGGPGMLGQLVHIDAIDQMYLTLDPHL--STGVEKPVATFHGTHSHRRMHLENIAA 214
Query: 349 D----VCLEYIG 356
D V L Y
Sbjct: 215 DTDSTVFLRYSR 226
>gi|157311519|ref|YP_001469562.1| deoxycytidylate deaminase [Enterobacteria phage Phi1]
gi|149380723|gb|ABR24728.1| Cd dCMP deaminase [Enterobacteria phage Phi1]
Length = 168
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 48/115 (41%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
+M A ++ ++ V LI KDG +I G G P
Sbjct: 6 YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGF---NGTPAGQVNCSCHAHKSGWL 59
Query: 54 -----------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ A G GA+ + T PC
Sbjct: 60 DDEGKMIPEKRPEHSAWSQKNEIHAELNAILFAARSGVSIEGASMWCTASPCPDC 114
>gi|33620697|ref|NP_891789.1| dCMP deaminase [Enterobacteria phage RB49]
gi|33438567|gb|AAL15123.2| dCMP deaminase [Enterobacteria phage RB49]
Length = 168
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 48/115 (41%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
+M A ++ ++ V LI KDG +I G G P
Sbjct: 6 YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGF---NGTPAGQVNCSCHAHKSGWL 59
Query: 54 -----------------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ A G GA+ + T PC
Sbjct: 60 DDDGKMIPEKRPEHSAWSQKNEIHAELNAILFAARNGVSIEGASMWCTASPCPDC 114
>gi|325068552|ref|ZP_08127225.1| riboflavin biosynthesis protein RibD [Actinomyces oris K20]
Length = 181
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
D + +L +L R + +L+EGG +A +F+ + LVD ++ Y
Sbjct: 73 PDHDPRAVLAVLAEREIRHVLLEGGPTLATAFLRAGLVDQVVAYT 117
>gi|332365579|gb|EGJ43339.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1059]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|322374783|ref|ZP_08049297.1| hypothetical protein HMPREF0849_00499 [Streptococcus sp. C300]
gi|321280283|gb|EFX57322.1| hypothetical protein HMPREF0849_00499 [Streptococcus sp. C300]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|307703172|ref|ZP_07640118.1| hypothetical protein SMSK23_1005 [Streptococcus oralis ATCC 35037]
gi|307623247|gb|EFO02238.1| hypothetical protein SMSK23_1005 [Streptococcus oralis ATCC 35037]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|306829039|ref|ZP_07462230.1| possible dihydrofolate reductase [Streptococcus mitis ATCC 6249]
gi|315612688|ref|ZP_07887600.1| possible dihydrofolate reductase [Streptococcus sanguinis ATCC
49296]
gi|304428844|gb|EFM31933.1| possible dihydrofolate reductase [Streptococcus mitis ATCC 6249]
gi|315315275|gb|EFU63315.1| possible dihydrofolate reductase [Streptococcus sanguinis ATCC
49296]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|293364919|ref|ZP_06611636.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316369|gb|EFE56805.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 163
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 93 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 150
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 151 PFAELVFSRKS 161
>gi|262281988|ref|ZP_06059757.1| reductase [Streptococcus sp. 2_1_36FAA]
gi|262262442|gb|EEY81139.1| reductase [Streptococcus sp. 2_1_36FAA]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|256396492|ref|YP_003118056.1| hypothetical protein Caci_7389 [Catenulispora acidiphila DSM 44928]
gi|256362718|gb|ACU76215.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 258
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L RG+ +L EGG + + +D + L + + G + L L
Sbjct: 167 DRLAERGLGRILCEGGPHLLAQLAAAGKMDELCLSMAPQLRGGDSMR-ILAGPDLTDGLP 225
Query: 340 CVRRDYFGSD--VCLEYIG 356
+ D + Y+
Sbjct: 226 LILHSLLTEDGFLFARYLV 244
>gi|125718834|ref|YP_001035967.1| reductase [Streptococcus sanguinis SK36]
gi|319946261|ref|ZP_08020501.1| dihydrofolate reductase [Streptococcus australis ATCC 700641]
gi|323350503|ref|ZP_08086165.1| dihydrofolate reductase [Streptococcus sanguinis VMC66]
gi|125498751|gb|ABN45417.1| Reductase, putative [Streptococcus sanguinis SK36]
gi|319747643|gb|EFV99896.1| dihydrofolate reductase [Streptococcus australis ATCC 700641]
gi|322123185|gb|EFX94870.1| dihydrofolate reductase [Streptococcus sanguinis VMC66]
gi|324989718|gb|EGC21661.1| dihydrofolate reductase [Streptococcus sanguinis SK353]
gi|324992447|gb|EGC24368.1| dihydrofolate reductase [Streptococcus sanguinis SK405]
gi|324996025|gb|EGC27936.1| putative dihydrofolate reductase [Streptococcus sanguinis SK678]
gi|325686899|gb|EGD28924.1| putative dihydrofolate reductase [Streptococcus sanguinis SK72]
gi|325689002|gb|EGD31010.1| dihydrofolate reductase [Streptococcus sanguinis SK115]
gi|325695525|gb|EGD37425.1| putative dihydrofolate reductase [Streptococcus sanguinis SK150]
gi|325697465|gb|EGD39351.1| dihydrofolate reductase [Streptococcus sanguinis SK160]
gi|327460678|gb|EGF07013.1| dihydrofolate reductase [Streptococcus sanguinis SK1]
gi|327462790|gb|EGF09112.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1057]
gi|327468353|gb|EGF13838.1| dihydrofolate reductase [Streptococcus sanguinis SK330]
gi|327472400|gb|EGF17831.1| putative dihydrofolate reductase [Streptococcus sanguinis SK408]
gi|327488753|gb|EGF20552.1| putative dihydrofolate reductase [Streptococcus sanguinis SK1058]
gi|328944849|gb|EGG39009.1| dihydrofolate reductase [Streptococcus sanguinis SK1087]
gi|332359271|gb|EGJ37092.1| putative dihydrofolate reductase [Streptococcus sanguinis SK49]
gi|332365784|gb|EGJ43541.1| dihydrofolate reductase [Streptococcus sanguinis SK355]
Length = 173
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|83311796|ref|YP_422060.1| deoxycytidylate deaminase [Magnetospirillum magneticum AMB-1]
gi|82946637|dbj|BAE51501.1| Deoxycytidylate deaminase [Magnetospirillum magneticum AMB-1]
Length = 140
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 25/103 (24%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG-------- 51
M ++ +D FM A + + V + V DG + G
Sbjct: 1 MTMAWYD-YFMGFAKHAASKSK---DPSTQVGAVAVGPDGEIRATGYNGLPRGVEDRPER 56
Query: 52 ---------CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE + A G +G T YVT PCS
Sbjct: 57 MERPAKYLWTSHAEENLVAHAARVGVSLKGCTVYVTHYPCSRC 99
>gi|37651679|ref|NP_932553.1| Cd [Aeromonas phage 44RR2.8t]
gi|66392000|ref|YP_238925.1| cd dCMP deaminase [Aeromonas phage 31]
gi|34732979|gb|AAQ81516.1| dCMP deaminase [Aeromonas phage 44RR2.8t]
gi|62114837|gb|AAX63685.1| cd dCMP deaminase [Aeromonas phage 31]
Length = 172
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 54/126 (42%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M VSS + A ++ ++ V +I KDG +I G G P
Sbjct: 1 MKVSSV----LQHAYIVAQESHCVSWK---VGAIITKDGRIISTGY---NGTPAGGHENC 50
Query: 54 ----------------------------------HAEVQAL---EEAGEEARGATAYVTL 76
HAE+ A+ ++G+ GA YVT+
Sbjct: 51 DDHAKAAGWLDPETGKLKAMYRQAHNEWSSCNEIHAELNAILYAAKSGQSIDGAEMYVTV 110
Query: 77 EPCSHY 82
PC
Sbjct: 111 SPCREC 116
>gi|186685435|ref|YP_001868631.1| deaminase-reductase domain-containing protein [Nostoc punctiforme
PCC 73102]
gi|186467887|gb|ACC83688.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme
PCC 73102]
Length = 177
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G ++ + GG A+ +SF+ L+D I+ ++G G P E+ +
Sbjct: 103 QGFENIWLVGGGALINSFLQHSLIDEYIISTIPTILGSGIQLFP--PPTPEEKLELINSK 160
Query: 345 YFGSDVC-LEYIG 356
+ S + Y
Sbjct: 161 QYSSGLLQSHYRR 173
>gi|320333701|ref|YP_004170412.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus maricopensis
DSM 21211]
gi|319754990|gb|ADV66747.1| CMP/dCMP deaminase zinc-binding protein [Deinococcus maricopensis
DSM 21211]
Length = 184
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 6 FDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-----------YGGC 52
D R ++ LR +R T + V ++V + G +I RG
Sbjct: 1 MDHRPYLQETLRLAREAQ--TQGSAPVGAVLVNEHGDIIARGRNRVGEAQTPQHVGDASV 58
Query: 53 PHAEVQALEEAG--EEARGATAYVTLEPCSHYG 83
HAE+ + G ++ + T Y +LEPC G
Sbjct: 59 AHAEMDLYFQIGKLKDPQHLTLYTSLEPCLMCG 91
>gi|229491067|ref|ZP_04384898.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229322048|gb|EEN87838.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 201
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG VA S + LVD + L+ + IG G P + + F G + L
Sbjct: 141 GGPTVAVSAFAAGLVDEVRLFLCPVNIGGGLRALPESRL----DLQLLEEKTFDGGVIYL 196
Query: 353 EY 354
Y
Sbjct: 197 RY 198
>gi|148927656|ref|ZP_01811111.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
gi|147886995|gb|EDK72508.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
Length = 204
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V G + S + L+D + L +VIG+G + N V+ F
Sbjct: 115 KNIQVPGSPRLVRSLLAEGLLDELYLSICPVVIGQGLK--LFDGISKTINLDMVQSQIFD 172
Query: 348 SDVC-LEYIGKN 358
+ + + Y K+
Sbjct: 173 NGLISVTYRPKS 184
>gi|298293867|ref|YP_003695806.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
gi|296930378|gb|ADH91187.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506]
Length = 172
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 30 SVACLIVKDGIVI-GRGVTAY---GGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V ++V+ G + G HAE+ + A + YVTLEPC
Sbjct: 43 PVGAVLVRGGTALAAEGNRMRELADPTAHAEMMVIRAAASVLGSDRLAECDLYVTLEPC- 101
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
CA I +RR+ DP G+++ SQ
Sbjct: 102 -----TMCAGAISFARLRRIYYGAPDPKGGAVENGVRFFSQATCH 141
>gi|119963021|ref|YP_949687.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119949880|gb|ABM08791.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 185
Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
T +L+ GG +A LVD L +++G G P ++ V+ F
Sbjct: 118 TDILI-GGPELAAQAFREGLVDECQLIIVPVLVGGGKKGLP---DGVDARLELVQERTFN 173
Query: 347 GSDVCLEYIG 356
G + L+Y
Sbjct: 174 GGAIFLKYRV 183
>gi|90413417|ref|ZP_01221409.1| putative dihydrofolate reductase [Photobacterium profundum 3TCK]
gi|90325505|gb|EAS41982.1| putative dihydrofolate reductase [Photobacterium profundum 3TCK]
Length = 177
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+G +L ++GG + +F+ L+D +I+ +++G G E ++F
Sbjct: 105 EQGYNNLYIDGGITI-QNFLKEELIDEMIITTIPVLLGGG--SPLFGELVTPQSFELTSS 161
Query: 344 DYF 346
+
Sbjct: 162 ETL 164
>gi|158429187|pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
gi|158429188|pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D + M A + P CLI KDG V+GRG H E+
Sbjct: 11 SKWDQKGMDIAYEEALLG-YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 70 TLENCGRLEGKVYKDTTLYTTLSPCEMCTGAIIMYGIPRCVIGENVNF---------KSK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K + ++ + +
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKLMKQFIDERPQDW 155
>gi|20093324|ref|NP_619399.1| hypothetical protein MA4540 [Methanosarcina acetivorans C2A]
gi|19918684|gb|AAM07879.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 198
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ + GG+ + F+ LV +I++ +++G GIP + E + + + S
Sbjct: 113 NIWLVGGSQLIRVFLEEDLVQDMIVFVVPVILGS-GIPLF-DRIGKEVRLRMIDTERYES 170
Query: 349 D-VCLEYIGK 357
V LEY +
Sbjct: 171 GLVKLEYEIE 180
>gi|319936681|ref|ZP_08011094.1| dihydrofolate reductase [Coprobacillus sp. 29_1]
gi|319808238|gb|EFW04803.1| dihydrofolate reductase [Coprobacillus sp. 29_1]
Length = 176
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P V E + ++ + I+ +L+ L + +
Sbjct: 53 WKTYHQIITELSPNEWVYEGMTSYILTHQNHQSTSQIFFTDEKPSQLIHHLKRKEGKGIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA V + ++D + ++G+G S + + ++ +
Sbjct: 113 ICGGANVIQQILQEDMIDEFYISIIPTLLGKG--ISLFGILDKKIDLRLIKTQSYNGITD 170
Query: 352 LEYIGK 357
L Y +
Sbjct: 171 LIYQRR 176
>gi|302537575|ref|ZP_07289917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. C]
gi|302446470|gb|EFL18286.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces
sp. C]
Length = 268
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
L RG+ L EGG + F+ + ++D + L S + G
Sbjct: 190 RELAARGLRRQLTEGGPRLLGQFVAADVLDELCLTISPTLTAGGA 234
>gi|258545066|ref|ZP_05705300.1| dihydrofolate reductase family protein [Cardiobacterium hominis
ATCC 15826]
gi|258519686|gb|EEV88545.1| dihydrofolate reductase family protein [Cardiobacterium hominis
ATCC 15826]
Length = 183
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
LL L + + GG + I L+D + + + ++G G+P
Sbjct: 100 LLANLKENSKQDIWIVGGGLLISKLIQEGLLDCLQVMIAPFLLG-DGVPLF-TALDCPYR 157
Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQE 363
G V L Y ++ ++E
Sbjct: 158 LKLTDCRRHGQFVELFYQIRSHSIRE 183
>gi|190890250|ref|YP_001976792.1| dihydrofolate reductase [Rhizobium etli CIAT 652]
gi|190695529|gb|ACE89614.1| putative dihydrofolate reductase protein [Rhizobium etli CIAT 652]
Length = 185
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ N + +L + G ++ + G A +A S + + LVD I +
Sbjct: 86 RTMTEPGWNNARIVSDPIPELTRLKQEEG-KTIFIFGSADLADSLLKAGLVDEIRICVVP 144
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+++G G + + G+ V L Y +
Sbjct: 145 VILGAGNPLFKPAAAQVPLKLIESSTTASGA-VILRYEPVKV 185
>gi|325959127|ref|YP_004290593.1| bifunctional deaminase-reductase domain-containing protein
[Methanobacterium sp. AL-21]
gi|325330559|gb|ADZ09621.1| bifunctional deaminase-reductase domain protein [Methanobacterium
sp. AL-21]
Length = 174
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
KK++ L + +L ++GG F+ L+ +I+ + +++G GIP
Sbjct: 92 HPKKIVEELNSKEFNNLYIDGG-QTIQRFLKEDLIHEMIITTASVILG-EGIPLF-NGIS 148
Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKN 358
+ F C R + + Y ++
Sbjct: 149 GDIKFKCERVEVLNPYLVKHYYERD 173
>gi|87120113|ref|ZP_01076009.1| cytosine deaminase [Marinomonas sp. MED121]
gi|86164815|gb|EAQ66084.1| cytosine deaminase [Marinomonas sp. MED121]
Length = 173
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56
M + D ++ L S+ V + N L+V D + T HAE
Sbjct: 12 MKQAEQDNHWLKQTLNLSQAAVD--AGNHPFGALLVIDNRLALEAENTVNTYNDATRHAE 69
Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHY 82
+ + +A + + A Y + EPC+
Sbjct: 70 MNLVSQACQNLSESQRKEAVLYTSTEPCAMC 100
>gi|319411601|emb|CBQ73645.1| related to DCD1-deoxycytidylate deaminase [Sporisorium reilianum]
Length = 370
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 30/127 (23%), Gaps = 56/127 (44%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53
+D F+ S + V ++V ++ G G P
Sbjct: 208 WDTYFLKLCNLASLRSNCMKR---RVGAVLVASNRILATGY---NGTPSGLRNCNQGGCA 261
Query: 54 -----------------------------------HAEVQALEEAGE---EARGATAYVT 75
HAE AL EAG A GAT Y
Sbjct: 262 RCNNTLLPSHSSAVDGAARAGSSACGQNLDECLCLHAEENALLEAGRGKIAAGGATMYCN 321
Query: 76 LEPCSHY 82
PC
Sbjct: 322 TCPCLRC 328
>gi|310640032|ref|YP_003944790.1| bifunctional deaminase-reductase domain protein [Paenibacillus
polymyxa SC2]
gi|309244982|gb|ADO54549.1| Bifunctional deaminase-reductase domain protein [Paenibacillus
polymyxa SC2]
Length = 179
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + +F+ + L++ I+ V+G GIP EG L F + G
Sbjct: 115 VWLVGGGQLVQAFMQAGLLEKAIIAIIPKVLG-QGIPLF-PEGTLPSTFQLQEIERRGDI 172
Query: 350 VCLEY 354
V L Y
Sbjct: 173 VLLHY 177
>gi|256851965|ref|ZP_05557352.1| ComE operon protein 2 [Lactobacillus jensenii 27-2-CHN]
gi|260661465|ref|ZP_05862378.1| ComE operon protein 2 [Lactobacillus jensenii 115-3-CHN]
gi|282931728|ref|ZP_06337216.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
gi|297205164|ref|ZP_06922560.1| competence protein ComEB [Lactobacillus jensenii JV-V16]
gi|256615377|gb|EEU20567.1| ComE operon protein 2 [Lactobacillus jensenii 27-2-CHN]
gi|260547920|gb|EEX23897.1| ComE operon protein 2 [Lactobacillus jensenii 115-3-CHN]
gi|281304171|gb|EFA96285.1| ComE operon protein 2 [Lactobacillus jensenii 208-1]
gi|297149742|gb|EFH30039.1| competence protein ComEB [Lactobacillus jensenii JV-V16]
Length = 160
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 27/106 (25%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--------- 49
M + ++ FM AL S+ + V ++VKD +IG G
Sbjct: 1 MSRNRIPWNQYFMMQALVISQRSTCNRA---LVGSVLVKDKRIIGTGYNGSVTGQEHCDD 57
Query: 50 ------GG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G H+E+ L + G YVT PC +
Sbjct: 58 VGHQMVDGHCIRTIHSEMNTLIQCAKNGVSTLDTEIYVTHFPCYNC 103
>gi|170782040|ref|YP_001710372.1| putative hydrolase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156608|emb|CAQ01759.1| putative hydrolase [Clavibacter michiganensis subsp. sepedonicus]
Length = 248
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
++ L GRG+T ++ EGG A+A S I + VD + L S ++
Sbjct: 161 RMGGDDVVDALRGRGLTHVVCEGGPALAASLIAAGRVDELCLTTSPELV 209
>gi|154487580|ref|ZP_02028987.1| hypothetical protein BIFADO_01437 [Bifidobacterium adolescentis
L2-32]
gi|154083709|gb|EDN82754.1| hypothetical protein BIFADO_01437 [Bifidobacterium adolescentis
L2-32]
Length = 149
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 30 SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG IGRG T HAEVQA+ EA T VTLEPC
Sbjct: 24 PVGAVVLDADGRAIGRGRNLRETHADPLAHAEVQAMREAAASLGTWNLADCTLVVTLEPC 83
Query: 80 SHYGRSP 86
+
Sbjct: 84 PMCAGAC 90
>gi|119492758|ref|XP_001263698.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Neosartorya fischeri NRRL 181]
gi|119411858|gb|EAW21801.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Neosartorya fischeri NRRL 181]
Length = 161
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 33/147 (22%)
Query: 11 MSAALRFSRWHVGLTSTNP---SVACLIV--KDGIVIGRGVT--------AYGGCPHAEV 57
M AL +R P V ++V ++ G + A G HAE
Sbjct: 1 MQYALEKARLS----PPAPTKFCVGAVLVDADKNEILSTGYSMELPGDRPADPGNTHAEQ 56
Query: 58 QALEEAGEE------------ARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVC 103
+ E + Y T+EPC+ G + + G +VV
Sbjct: 57 CCFIKVAERHNIPEDRLGEVLPKNTVLYTTMEPCNERLSGNRTCVDRILSLKGAVKVVYV 116
Query: 104 VDDPDVRV--SGRGLQWLSQKGIIVDR 128
G + L G+IV+
Sbjct: 117 GIKEPETFIGQNLGRKKLEDGGVIVEH 143
>gi|330903491|gb|EGH34063.1| cytosine deaminase [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 125
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA----RGATAYVTLEPCSH 81
+ +I G +IGRG H E+ ALE AG + R + Y TL PC+
Sbjct: 2 PIGSVIGHGGKIIGRGHNRRVQEGSATKHGEMDALENAGRQPASVYRDSVLYTTLSPCAM 61
Query: 82 YG 83
Sbjct: 62 CS 63
>gi|238695103|ref|YP_002922297.1| dCMP deaminase [Enterobacteria phage JSE]
gi|220029239|gb|ACL78174.1| dCMP deaminase [Enterobacteria phage JSE]
Length = 168
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 33/112 (29%), Gaps = 42/112 (37%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-------------AYGG----- 51
+M A ++ ++ V LI KDG +I G G
Sbjct: 6 YMQIAYLIAKNSKCVSWK---VGALIEKDGRIISTGFNGTPAGQVNCSCHAHKNGWLDDD 62
Query: 52 -------CP-----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
P HAE+ A+ A G GA+ + T PC
Sbjct: 63 GKMIPEKRPEHSAWSQKNEIHAELNAILFAARSGVSIEGASMWCTASPCPDC 114
>gi|228994787|ref|ZP_04154587.1| hypothetical protein bpmyx0001_54510 [Bacillus pseudomycoides DSM
12442]
gi|228764955|gb|EEM13709.1| hypothetical protein bpmyx0001_54510 [Bacillus pseudomycoides DSM
12442]
Length = 189
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T V + + + + +K N ++ + + L + + + GGA++
Sbjct: 70 TKAEKEVWELVHSKEKYVFSRTQKGIDNKAIFINDNILEEVNKLKKKSGKDIWLYGGASL 129
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+FI+ LVD L +++G G P + + N V F
Sbjct: 130 ITTFISLGLVDEFRLSVHPVILG-EGKPLFI-DIKQRLNLKMVNTRTF 175
>gi|67525479|ref|XP_660801.1| hypothetical protein AN3197.2 [Aspergillus nidulans FGSC A4]
gi|40743774|gb|EAA62961.1| hypothetical protein AN3197.2 [Aspergillus nidulans FGSC A4]
gi|259485844|tpe|CBF83211.1| TPA: dihydrofolate reductase family protein (AFU_orthologue;
AFUA_8G06820) [Aspergillus nidulans FGSC A4]
Length = 210
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLE 335
+ IL G + + V+GG V F+ VD ++L + +++G G P + +
Sbjct: 126 EADRILTEEGASLVYVDGGKTV-QEFLRRGWVDEMVLTLAPVLLGGDEGRPRLFGDLPAD 184
Query: 336 KNFMCVRRDYFGSDVC 351
F D + +
Sbjct: 185 IRFTLCGVDVIENGML 200
>gi|329113789|ref|ZP_08242560.1| Putative deaminase [Acetobacter pomorum DM001]
gi|326696799|gb|EGE48469.1| Putative deaminase [Acetobacter pomorum DM001]
Length = 151
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEA 63
M AL + G V +++ G V+ + + HAE+ + EA
Sbjct: 7 MELALWQAHLAAANGEV----PVGAVLLDSAGNVLAQAGNRVEELHDPSAHAEMLVMREA 62
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G++ T +V+LEPC
Sbjct: 63 VQQRQGQKLADCTLFVSLEPCPMC 86
>gi|290958302|ref|YP_003489484.1| zinc-binding protein [Streptomyces scabiei 87.22]
gi|260647828|emb|CBG70933.1| putative zinc-binding protein [Streptomyces scabiei 87.22]
Length = 161
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEE 62
+++ A+ +R + + + DG ++GRG G P HAE A
Sbjct: 7 RAWLATAVEEARTGLAEGGI--PIGAALYGPDGTLLGRGHNRRVQDGDPSTHAETAAFRA 64
Query: 63 AGEE--ARGATAYVTLEPCSHYG 83
AG + RG T TL PC +
Sbjct: 65 AGRQRTYRGTTMVTTLSPCWYCS 87
>gi|291296679|ref|YP_003508077.1| bifunctional deaminase-reductase domain-containing protein
[Meiothermus ruber DSM 1279]
gi|290471638|gb|ADD29057.1| bifunctional deaminase-reductase domain protein [Meiothermus ruber
DSM 1279]
Length = 196
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V G A + S + + LVD ++L + I++G G + +F V +
Sbjct: 128 YIYVYGSATLVRSLLAADLVDELLLTVAPILLGRG--KTIFPTTEKMASFELVSSVKAKT 185
Query: 349 DVCL-EYIG 356
+ Y+
Sbjct: 186 GALVCRYVR 194
>gi|331248562|ref|XP_003336904.1| hypothetical protein PGTG_18310 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309315894|gb|EFP92485.1| hypothetical protein PGTG_18310 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 327
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 28/92 (30%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----------- 53
+D+ F A S + V ++V D V+ G G P
Sbjct: 201 WDSYFTQLANLASLRSNCMKR---RVGAVLVTVDKRVLSTGY---NGTPRGMHTVVAGCG 254
Query: 54 ---------HAEVQALEEAG-EEARGATAYVT 75
HAE AL EAG + +T Y
Sbjct: 255 VNLEECLCLHAEENALLEAGRDRITNSTLYCN 286
>gi|308233564|ref|ZP_07664301.1| dCMP deaminase [Atopobium vaginae DSM 15829]
Length = 157
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 35/110 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A + + V I + ++ G G P
Sbjct: 10 TWDEFFMRVAAAAAMRSK---DPHTQVGACIADSNDRILSVGY---NGTPTGINDDEFPW 63
Query: 54 ---------------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRS 85
HAE AL + ++ +GATAYVTL PC +
Sbjct: 64 ESSADPLRDKHNFVIHAEANALLNYRGSLKDMQGATAYVTLFPCQECAKM 113
>gi|160934054|ref|ZP_02081441.1| hypothetical protein CLOLEP_02917 [Clostridium leptum DSM 753]
gi|156866727|gb|EDO60099.1| hypothetical protein CLOLEP_02917 [Clostridium leptum DSM 753]
Length = 162
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 38/129 (29%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + ++ A + T + +IV +I G G P
Sbjct: 1 MERRDKENYYLDIAETVAERG---TCLRRNFGAIIVNKDQIISTGY---VGAPRGRRNCI 54
Query: 54 ------------------------HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPC 88
HAE A+ A G T Y+ + +
Sbjct: 55 DLGYCVRESLQIPRGERYELCRSVHAEANAIIHASRNDTLGGTLYLVGKNAADNSYVENA 114
Query: 89 AQFIIECGI 97
A + +
Sbjct: 115 APCSMCKRM 123
>gi|323455737|gb|EGB11605.1| hypothetical protein AURANDRAFT_15038 [Aureococcus anophagefferens]
Length = 161
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
H+TLK+AV + + G S T S + VH LR SDA+LVG+ TV DDP LT R
Sbjct: 1 HVTLKVAVDRFGAVDDLGGKSGRFTSPASLDCVHRLRRGSDAVLVGVSTVARDDPSLTVR 60
Query: 211 LNGLQEH-SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+ P+R+ILDP+ + D+ ++ L V + A+A
Sbjct: 61 RVDPIDDAQPLRVILDPNGRAPRDAALLTDGLPTAVFSRGDFGAVDPAVALEPFGELPTM 120
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
L + GV L+VEGG A +F+ + LVD ++ R+ +
Sbjct: 121 --------LDALERDHGVAHLMVEGGPFTARAFLAAGLVDRAVIVRAPV 161
>gi|317014921|gb|ADU82357.1| riboflavin biosynthesis protein [Helicobacter pylori Gambia94/24]
Length = 344
Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 61/332 (18%), Positives = 109/332 (32%), Gaps = 69/332 (20%)
Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA----- 67
L + + L NPSVAC ++ K+ ++ PHAEV A + A +
Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70
Query: 68 ------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
+ +TLEPC+ YG++P C++ + +R V+
Sbjct: 71 NDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRAVIA 130
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163
++ + + GL L + I E K R +E++ L ++
Sbjct: 131 AEENEAK--KGGLARLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFK-LALRMN 187
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-I 222
ITG S H RA D +++ T+ D+P L R I
Sbjct: 188 GDYYHG---KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNI 244
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
+ ++ SK+ D P
Sbjct: 245 AILSKHSINPHSKVFSVPNRLVNTFNNPKDLP---------------------------- 276
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D+++L+
Sbjct: 277 LEKGFN--FIEGGWGLFESLRDK--IDALLLH 304
>gi|319782007|ref|YP_004141483.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167895|gb|ADV11433.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 216
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 4/145 (2%)
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDC 272
+ E L + P+
Sbjct: 48 MDELFSKPFALLLGRRTYDIFAAYWPYQKDPIADAFNPATKYVATHRPDTLTWQNTQSLG 107
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
D+ L L LL++G + + + + L+D I L +++G G +
Sbjct: 108 PDIVAELRRLKQEDGPDLLIQGSGNLIQTLLANGLIDEIRLMVFPLLLGNG--KRLFGDS 165
Query: 333 YLEKNFMCVRRDYFGSDVCL-EYIG 356
+ F ++ G+ V + Y
Sbjct: 166 AIPAAFKLIKSQATGTGVIMATYER 190
>gi|94971013|ref|YP_593061.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
versatilis Ellin345]
gi|94553063|gb|ABF42987.1| bifunctional deaminase-reductase-like protein [Candidatus
Koribacter versatilis Ellin345]
Length = 177
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 12/129 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-- 293
+ P +++ + K ++ L+ + L E
Sbjct: 52 MRYWDEDLPDWDTDDHEFAAAWRSKPKWVVSRSLQSVGPNATLIAEDFKGAIRKLKAEMD 111
Query: 294 -----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GG +A S + L+D LY +V+G G P V D
Sbjct: 112 GEIDVGGPILAQSLTEAGLIDEYRLYLRPVVLGS-GTPFFAGPR---PPLHLVASDLIVE 167
Query: 349 D-VCLEYIG 356
D + L Y+
Sbjct: 168 DLIRLTYVP 176
>gi|229000669|ref|ZP_04160193.1| hypothetical protein bmyco0003_51920 [Bacillus mycoides Rock3-17]
gi|228759077|gb|EEM08099.1| hypothetical protein bmyco0003_51920 [Bacillus mycoides Rock3-17]
Length = 189
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T + + + + + +K + N ++ + + L + + + GGA++
Sbjct: 70 TKTEKELWELIHSKEKYVFSRTQKGSDNKAIFINDNILEDVNKLKKKSGKDIWLYGGASL 129
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+FIN LVD L +++G G P + + N V F
Sbjct: 130 ITTFINLGLVDEFRLSVHPVILG-EGKPLFI-DIKQRLNLKMVNTRTF 175
>gi|238878329|gb|EEQ41967.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida albicans
WO-1]
Length = 302
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-----------SRLVDSIILYRSQIVI 320
+ +++L L G+ S+++EGGA + + ++ +L+DS+I+ + + +
Sbjct: 206 SDNWREILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDQKLIDSVIITIAPVFL 265
Query: 321 GEGGI 325
G G+
Sbjct: 266 GCNGV 270
>gi|226314093|ref|YP_002773989.1| hypothetical protein BBR47_45080 [Brevibacillus brevis NBRC
100599]
gi|226097043|dbj|BAH45485.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 150
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
+M A+ + + P +VK +I HAE+ A+ EA +
Sbjct: 3 YMKLAVEKTLEGMNNKLGGP-FGAAVVKGNEIIAVCSNRMMADMDPSQHAEMVAIREACK 61
Query: 66 -----EARGATAYVTLEPCSHY 82
+ G Y T EPC
Sbjct: 62 ALGTMDLAGCEIYATCEPCPMC 83
>gi|327179698|gb|AEA30246.1| putative cytosine/adenosine deaminase [Streptomyces sp. Acta
2897]
Length = 159
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 34 LIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
++V G ++G G HAEV AL EA GAT + EPC+
Sbjct: 33 VVVGSGRILGTGFNRVREDNDPTAHAEVVALREATTKYGIHAVAGATLIASGEPCALC 90
>gi|327192633|gb|EGE59574.1| putative dihydrofolate reductase protein [Rhizobium etli CNPAF512]
Length = 185
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 1/126 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
S + ++ + D LT L ++ +
Sbjct: 61 SYWPTAEGEGRIKAYMNGIAKIVVSRTMTEPGWNNARIVSDPIPELTRLKQEEGKTIFIF 120
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A +A S + + L+D I + +++G G + + G+ V L
Sbjct: 121 GSADLADSLLKAGLIDEIRICVVPVILGAGNPLFKPAAAQVPLKLIESSTTASGA-VILR 179
Query: 354 YIGKNL 359
Y +
Sbjct: 180 YEPVKV 185
>gi|266622681|ref|ZP_06115616.1| putative cytosine deaminase [Clostridium hathewayi DSM 13479]
gi|288865589|gb|EFC97887.1| putative cytosine deaminase [Clostridium hathewayi DSM 13479]
Length = 160
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR-GV---TAYGGCPHA 55
M S ++ A+ S+ + N L+V KDG ++ G T HA
Sbjct: 1 MSYQS-HEYYLRRAIEISKEAR--AAGNTPFGALLVNKDGDIVMEQGNIEITDKICTGHA 57
Query: 56 EVQALEEAGEEAR-----GATAYVTLEPCSHY 82
E A E T Y T EPC+
Sbjct: 58 EATLAARASHEFTKDYLWDCTLYTTAEPCAMC 89
>gi|300781046|ref|ZP_07090900.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
ATCC 33030]
gi|300532753|gb|EFK53814.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium
ATCC 33030]
Length = 237
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ L G ++ EGG ++ L+D + L G P+ L+
Sbjct: 161 EIVEKLRELGYGRIICEGGPSLYADMFAHSLIDVLHLTIDPR---TNGEPAGLQGD-FTV 216
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
N + GS + Y
Sbjct: 217 NLELEQVQTDGSFLFARYRR 236
>gi|118619510|ref|YP_907842.1| cytidine/deoxycytidylate deaminase [Mycobacterium ulcerans Agy99]
gi|118571620|gb|ABL06371.1| cytidine/deoxycytidylate deaminase [Mycobacterium ulcerans Agy99]
Length = 152
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 30 SVACL-IVKDGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ + I DG + R V A HAE+ AL A G GAT VT+EP
Sbjct: 24 PIGAVMISADGTELARAVNAREELGDPTAHAEILALRAAARVLGDGWRLEGATLAVTVEP 83
Query: 79 CSHY 82
C+
Sbjct: 84 CTMC 87
>gi|322377812|ref|ZP_08052301.1| hypothetical protein HMPREF0851_01608 [Streptococcus sp. M334]
gi|321281235|gb|EFX58246.1| hypothetical protein HMPREF0851_01608 [Streptococcus sp. M334]
Length = 173
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E ++ + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEG-QRCYQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|284992368|ref|YP_003410922.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065613|gb|ADB76551.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 208
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LV G + + + LVD + L ++G G+ + + R GS
Sbjct: 136 DVLVFGSRTLWGDLLPAGLVDELFLLVGPALLGA-GLRAFPDGVPAHLRLRDTSRRP-GS 193
Query: 349 D-VCLEYIGKNLC 360
D V L Y
Sbjct: 194 DSVLLHYTVDRAR 206
>gi|124027442|ref|YP_001012762.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
butylicus DSM 5456]
gi|123978136|gb|ABM80417.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus
butylicus DSM 5456]
Length = 250
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG------IPSPLE 330
L + V GV LLVEGG + +S ++SRLVD + + V G + +
Sbjct: 133 ALEILAVEYGVERLLVEGGGRLNYSLLSSRLVDEVRATITPYVFAAGRSFFEDPVGTGFR 192
Query: 331 EGYLEKNFMCV--RRDYFGSDVCLEYIGKNLC 360
+ V G V + Y +
Sbjct: 193 DTRESPRLQLVCTELCPCGRCVHVVYRVVDRR 224
>gi|308067306|ref|YP_003868911.1| hypothetical protein PPE_00519 [Paenibacillus polymyxa E681]
gi|305856585|gb|ADM68373.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 179
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + +F+ + L++ I+ V+G GIP EG L F + G
Sbjct: 115 VWLVGGGQLVRAFLQAGLLEKAIIAIIPKVLG-QGIPLF-PEGTLPSTFKLKEIERRGDI 172
Query: 350 VCLEY 354
L Y
Sbjct: 173 ALLHY 177
>gi|54302128|ref|YP_132121.1| putative dihydrofolate reductase [Photobacterium profundum SS9]
gi|46915549|emb|CAG22321.1| putative dihydrofolate reductase [Photobacterium profundum SS9]
Length = 177
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+G +L ++GG + +F+ L+D +I+ I++G G E ++F
Sbjct: 105 EQGYNNLYIDGGITI-QNFLKEDLIDEMIITTIPILLGGG--SPLFGELVTPQSFELTGS 161
Query: 344 DYF 346
+
Sbjct: 162 EIL 164
>gi|325003198|ref|ZP_08124310.1| deaminase-reductase domain-containing protein [Pseudonocardia sp.
P1]
Length = 183
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G +A + + + +VD + LY ++G G P + FG+ V L
Sbjct: 123 GPTLAAAALRAGIVDDVELYLVPQLVGGGLRALP---DGVRTGLELAGERRFGNGFVFLH 179
Query: 354 YIGK 357
Y +
Sbjct: 180 YRRR 183
>gi|302868489|ref|YP_003837126.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315505135|ref|YP_004084022.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|302571348|gb|ADL47550.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
gi|315411754|gb|ADU09871.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 187
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
L GGA +A + + LVD L+ +V+G G P + + + F + V
Sbjct: 121 LTVGGANLAAQALEAGLVDECQLFVWPVVVGGGK---PGLPTGMRVDLELLDERRFRNGV 177
Query: 351 C-LEYIG 356
L Y
Sbjct: 178 VHLRYRP 184
>gi|260904468|ref|ZP_05912790.1| hypothetical protein BlinB_04004 [Brevibacterium linens BL2]
Length = 183
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P ++T D P + ++ +I + + + + G L + GG V
Sbjct: 63 WPYSIPTWVMTHRDLPKPSKDEVSEDPDIRFAKGSVADYYVEMCMATGDHDLWIMGGGGV 122
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
A F++ L+D II + + + +G G PL L+ + V
Sbjct: 123 AGQFVDEGLLDEIITWTAPVTLGSGR---PLLPRRLDLELLDVDWK 165
>gi|187926287|ref|YP_001892632.1| bifunctional deaminase-reductase domain protein [Ralstonia
pickettii 12J]
gi|241665774|ref|YP_002984133.1| bifunctional deaminase-reductase domain protein [Ralstonia
pickettii 12D]
gi|187728041|gb|ACD29205.1| bifunctional deaminase-reductase domain protein [Ralstonia
pickettii 12J]
gi|240867801|gb|ACS65461.1| bifunctional deaminase-reductase domain protein [Ralstonia
pickettii 12D]
Length = 220
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 35/145 (24%), Gaps = 11/145 (7%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + R G + K + V A
Sbjct: 62 DFAARSFRNVGAWILGRNMFGPIRGDWPDDNWKGWWGDNPPYHVPVFVLTHHARAPIEMA 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + L G + + GG + ++ L+D + + S +++G
Sbjct: 122 GGTTFHFITGGFREALDRAREAAGGKDVRIGGGPSTIRQYLREGLIDELHIAISPVLLGR 181
Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFG 347
G E F + G
Sbjct: 182 G-----------EPLFEGIDLRALG 195
>gi|256847243|ref|ZP_05552689.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lactobacillus coleohominis 101-4-CHN]
gi|256715907|gb|EEU30882.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lactobacillus coleohominis 101-4-CHN]
Length = 236
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-- 334
L+ + G+ ++ + GGA + +F+ + LVD I L + V G+ S
Sbjct: 152 ALVKLKRYFGLDAIALCGGATIDGAFLQAGLVDEISLVVAPFVSGDNATQSSFNTLGKFT 211
Query: 335 EKNFMCVRRDYFGS 348
++ F
Sbjct: 212 DEQFEFKSATKLAD 225
>gi|297201565|ref|ZP_06918962.1| cytidine/deoxycytidine deaminase [Streptomyces sviceus ATCC
29083]
gi|197711065|gb|EDY55099.1| cytidine/deoxycytidine deaminase [Streptomyces sviceus ATCC
29083]
Length = 152
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEE 62
R+++ A+ +R + + + DG ++GRG G P HAE A
Sbjct: 10 HRWLATAVEEARAGLAEGGI--PIGAALYGADGTLLGRGHNRRVQDGDPSLHAETAAFRA 67
Query: 63 AG--EEARGATAYVTLEPCSHYG 83
AG RG T TL PC +
Sbjct: 68 AGRQRSYRGTTMVTTLSPCWYCS 90
>gi|15828339|ref|NP_302602.1| cytidine/deoxycytidylate deaminase [Mycobacterium leprae TN]
gi|221230816|ref|YP_002504232.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium leprae
Br4923]
gi|13094032|emb|CAC31991.1| possible cytidine/deoxycytidylate deaminase [Mycobacterium leprae]
gi|219933923|emb|CAR72573.1| possible cytidine/deoxycytidylate deaminase [Mycobacterium leprae
Br4923]
Length = 171
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQA 59
+ D + AAL + S + + +++ DG + R V A HAE+ A
Sbjct: 15 TTDEDLIRAALTVATTAG---SRDVPIGAVVLGADGNELARAVNAREAIGDPTAHAEILA 71
Query: 60 LEEA------GEEARGATAYVTLEPCSHY 82
+ A G G T VT+EPC+
Sbjct: 72 MRAAAGTLGNGWRLEGTTLAVTVEPCTMC 100
>gi|123485888|ref|XP_001324597.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
gi|121907482|gb|EAY12374.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
Length = 276
Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMC 340
V L V GGA + +F+ + +VD + + + G SP F
Sbjct: 159 KVNVLSVHGGATINWTFLQAGIVDELSICMAAAADGANDTLTLFEKSPYALKDSPIEFEL 218
Query: 341 VRRDYF-----GSDVCLEYIGKNLCL 361
D GSD+ L + L
Sbjct: 219 KSADKISNGGCGSDILLRSHKRKKFL 244
>gi|171910555|ref|ZP_02926025.1| bifunctional deaminase-reductase domain protein [Verrucomicrobium
spinosum DSM 4136]
Length = 187
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L V GG +A F + L+D +IL + +G+G S L G
Sbjct: 117 KNLWVVGGGDLAGQFYDEGLLDELILQVGSVTLGKG--KSLFPRTVLSPALRLTAVRQMG 174
Query: 348 SDVC-LEYIGKN 358
+ L Y K
Sbjct: 175 PSMVELRYEVKK 186
>gi|152971489|ref|YP_001336598.1| putative bifunctional deaminase-reductase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|150956338|gb|ABR78368.1| putative bifunctional deaminase-reductase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 178
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
CR ++ LT L+ + V + ++GG + SF+ LVD I++ +++G G
Sbjct: 91 QFSCRTPREALTDLMEKNVHRVYIDGG-QLIQSFLREGLVDDIVITTVPVLLGSG--KPL 147
Query: 329 LEEGYLEKNFMCVRRDYF 346
+ + + F
Sbjct: 148 FGVLPHDVDLTLLSSRSF 165
>gi|330723755|gb|AEC46125.1| deoxycytidylate deaminase [Mycoplasma hyorhinis MCLD]
Length = 93
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 32/85 (37%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
+++ F++ A ++ N V IV K V+G G G P
Sbjct: 7 NWNEYFLALAKISAKRSK---DPNTQVGACIVSKQNRVLGIGY---NGMPKGNDVDFPWS 60
Query: 54 ---------------HAEVQALEEA 63
HAE+ A+ +
Sbjct: 61 KDSNKASEVKYSYVIHAEINAILNS 85
>gi|325180064|emb|CCA14465.1| RAC family serine/threonineprotein kinase putative [Albugo
laibachii Nc14]
Length = 1140
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 30/95 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP--------- 53
+++ FMS A + + V IV ++ ++G G GC
Sbjct: 85 NWNDYFMSVAFLSAMRSK---DPSTQVGACIVNREKKIVGIGYNGFPNGCDDDDLPWARK 141
Query: 54 ---------------HAEVQAL-EEAGEEARGATA 72
HAE+ A+ + + G T
Sbjct: 142 NSGDDILATKYPYVCHAEMNAILNKNSADVDGCTV 176
>gi|254775495|ref|ZP_05217011.1| hypothetical protein MaviaA2_12621 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 122
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-----IGEGGIPSPLEEGYLEKNF 338
G+ +L EGG + + + + + + + + +G P+
Sbjct: 48 EEGMHRILCEGGPTLLDELVEADALTELCVTLAPKLAASQPLGYRVHPA---RLTAPVGL 104
Query: 339 MCVRRDYFGSDVCLEYIG 356
+ L Y
Sbjct: 105 HLAHALVCDDYLFLRYRR 122
>gi|255631480|gb|ACU16107.1| unknown [Glycine max]
Length = 156
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 33 CLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
+IV + ++ R HAEV + +A E+ Y + EPC
Sbjct: 26 AIIVCNDEIVARCHNMVLRNTDPTAHAEVTVIRKACEKLNQIELSDCEIYASCEPCPMC 84
>gi|255931995|ref|XP_002557554.1| Pc12g07190 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582173|emb|CAP80346.1| Pc12g07190 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 227
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK---------DGIVIGRGVT-AYGGCP 53
+S ++ L + TN V +++ D ++ G T G
Sbjct: 5 TSPHIPYIKQCLSLAEKSPPR-PTNFRVGAVLLSRKDNDPTFTDDRILSTGYTMELAGNT 63
Query: 54 HAEVQALE-----------EAGEEA-----RGATAYVTLEPC 79
HAE + GE R YVT+EPC
Sbjct: 64 HAEQCCFANYAAVHKVPDDQVGEVLPVEPGRKLVMYVTMEPC 105
>gi|254441373|ref|ZP_05054866.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Octadecabacter antarcticus 307]
gi|198251451|gb|EDY75766.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Octadecabacter antarcticus 307]
Length = 151
Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
+ +IV G+VI HAE+ A+ A E G YVTLEPC
Sbjct: 24 PIGAVIVSPTGLVIAAAGNRTRELNDPTAHAEILAIRAACAELGQERLTGHDIYVTLEPC 83
Query: 80 SHY 82
Sbjct: 84 PMC 86
>gi|239815773|ref|YP_002944683.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
gi|239802350|gb|ACS19417.1| CMP/dCMP deaminase zinc-binding [Variovorax paradoxus S110]
Length = 369
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT----AYGGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCS 80
V ++V++G + G + HAE+ A G +VTLEPC+
Sbjct: 33 PVGAVLVRNGQFVASGRNTPVAQHDPSAHAEINALRAGAAALGNYRLDGCELFVTLEPCA 92
Query: 81 HY 82
Sbjct: 93 MC 94
>gi|220913945|ref|YP_002489254.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
gi|219860823|gb|ACL41165.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
Length = 164
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHA 55
M + +F++ ++R + +V + +IV DG GV HA
Sbjct: 1 MSTTVTAEQFLARSIRLATANVLNSGG--PFGAMIVTADGKTF-DGVNRVTADNDPTAHA 57
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHY 82
EV A+ A + GA Y + EPC
Sbjct: 58 EVTAIRTACREMGTFDLSGAVLYTSCEPCPMC 89
>gi|115379689|ref|ZP_01466768.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|310825496|ref|YP_003957854.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
gi|115363303|gb|EAU62459.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|309398568|gb|ADO76027.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 174
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L R L + GG +A L+D ++L + +++G G P L
Sbjct: 94 AVVRTLKAREGRDLWLCGGGELASVLFAEGLIDEVLLKLNPVLLGS-GTPL-LTHLKDPT 151
Query: 337 NFMCVRRDYF-GSDVCLEY 354
+ + G V L Y
Sbjct: 152 RLELLSTKVYRGGVVLLHY 170
>gi|110003913|emb|CAK98253.1| putative cytidine and deoxycytidylate deaminase protein
[Spiroplasma citri]
Length = 159
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 30 SVACLIV-KDGIVIGRGV---TAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCS 80
++ L+V ++G +I G T HAE+ AL +A + R + +VT+EPC
Sbjct: 37 PISALVVDRNGKIIAIGYNKTTKNSVTTHAEIFALNQACRKKRTNKISDCSIWVTVEPCM 96
Query: 81 HY 82
Sbjct: 97 MC 98
>gi|83859467|ref|ZP_00952988.1| cytidine and deoxycytidylate deaminase family protein
[Oceanicaulis alexandrii HTCC2633]
gi|83852914|gb|EAP90767.1| cytidine and deoxycytidylate deaminase family protein
[Oceanicaulis alexandrii HTCC2633]
Length = 164
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 30 SVACLIVK--DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
V +IV +I A HAE++AL A + G YVTLEP
Sbjct: 34 PVGAVIVDPQTDNIIAEAGNAPISDCDPTGHAEIRALRLAAQKLGNYRLTGLELYVTLEP 93
Query: 79 CSHY 82
C+
Sbjct: 94 CAMC 97
>gi|323484081|ref|ZP_08089451.1| hypothetical protein HMPREF9474_01200 [Clostridium symbiosum
WAL-14163]
gi|323402523|gb|EGA94851.1| hypothetical protein HMPREF9474_01200 [Clostridium symbiosum
WAL-14163]
Length = 176
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ T L+P V + + + I + +++ L ++
Sbjct: 53 WNTYHQVTTELSPGEWVYKGLTTYVITHRKLSPTENIKFVQDNPCRVVEQLKSEEGKAIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA++ H + L+D + ++G G E E VR +
Sbjct: 113 ICGGASIIHPLMQGGLIDEYYISVMPTILGSGIR--LFGESQDEIKLKLVRTQSYNGITE 170
Query: 352 LEYIGK 357
L Y+ +
Sbjct: 171 LVYVRR 176
>gi|118468256|ref|YP_888948.1| cytosine deaminase [Mycobacterium smegmatis str. MC2 155]
gi|118169543|gb|ABK70439.1| cytosine deaminase [Mycobacterium smegmatis str. MC2 155]
Length = 146
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALEE 62
+ + A+ +R + + + DG ++G G G P HAE A
Sbjct: 4 EQMLDVAVEEARKGLSEGGI--PIGAALFSADGELLGSGHNRRVQDGDPSIHAETDAFRA 61
Query: 63 AGEE--ARGATAYVTLEPCSHYG 83
AG + R TL PC +
Sbjct: 62 AGRQRGYRKTIMVTTLSPCWYCS 84
>gi|123424979|ref|XP_001306702.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
gi|121888291|gb|EAX93772.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
Length = 289
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEK 336
G+ +L V GGA + SF+ + +VD + + + G+G +P
Sbjct: 157 KFGINTLGVLGGATINWSFVQAGIVDELSICL--VAAGDGANKSLTLFEKAPQIVENSPV 214
Query: 337 NFMCVRRDYFGSD-VCLEYIGKNLCLQE 363
F D ++ + L+Y K +E
Sbjct: 215 EFELKSIDRLSTNGLWLKYTPKGARNEE 242
>gi|312078286|ref|XP_003141672.1| tRNA-specific adenosine deaminase 2 [Loa loa]
gi|307763164|gb|EFO22398.1| tRNA-specific adenosine deaminase 2 [Loa loa]
Length = 205
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 5 SFDA-RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
+ D F++ A + N V C+ V +G + G HAE+
Sbjct: 21 NEDEVHFLNRAFEIAVDA---VLNNEVPVGCVFVFEGQEVAFGRNDVNRTKNPTYHAEMV 77
Query: 59 ALEE-------AGEEARG----ATAYVTLEPCSHY 82
ALE G E +T YVTLEPC
Sbjct: 78 ALEMMKQWCMDNGHELEDVMRRSTLYVTLEPCIMC 112
>gi|308177125|ref|YP_003916531.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307744588|emb|CBT75560.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 197
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 31/111 (27%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ P D V + + + +
Sbjct: 60 MGQNMFGPPSGDEQADWIGWWGDNPPYHSPVFVLTHHHKPTLCLEGGTSFQFITQGIEEA 119
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
L G + + GGA F+ + L+D + L+ + I +G+G +
Sbjct: 120 LCQAQDAAGERPVAIAGGAQTIVQFLRAGLIDELRLHIAPIRLGQGEAITV 170
>gi|331266880|ref|YP_004326510.1| dihydrofolate reductase family protein [Streptococcus oralis Uo5]
gi|326683552|emb|CBZ01170.1| dihydrofolate reductase family protein [Streptococcus oralis Uo5]
Length = 173
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
+ + K+
Sbjct: 161 PFAEMVFSRKS 171
>gi|302869791|ref|YP_003838428.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315503727|ref|YP_004082614.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|302572650|gb|ADL48852.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
gi|315410346|gb|ADU08463.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 187
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 11/167 (6%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + + + + + S TA P + + +
Sbjct: 20 GDDLGWGAPSDELFQWWSDRVGATGTALYGRRL-WEAMSSHWPTADQQPGVTPAQVEFAG 78
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLV 308
K + +L+T +T L E GGA +A + + L+
Sbjct: 79 RWRDMPKVVFSSTTRPVDWNTRLVTGDAVTEITRLKAEDGGPMDIGGATLAAAAMRGGLI 138
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
D +L +++G+G N V F G + Y
Sbjct: 139 DEYVLVTHPVLVGDG--KPFFTALDNWVNLALVETRTFPGGVLLTRY 183
>gi|207092337|ref|ZP_03240124.1| riboflavin biosynthesis protein [Helicobacter pylori
HPKX_438_AG0C1]
Length = 344
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 61/334 (18%), Positives = 108/334 (32%), Gaps = 67/334 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67
+ L + H L NPSVAC ++ K+ ++ HAEV A + A +
Sbjct: 8 LEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRP 67
Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
+ +TLEPC+ YG++P C+ + +RV
Sbjct: 68 HLKSDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRV 127
Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160
V+ ++ + + GL+ L + I E K R +E++ L ++
Sbjct: 128 VIAAEENEAK--KGGLERLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFK-LAL 184
Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220
ITG S H RA D +++ T+ D+P L R
Sbjct: 185 RMNGDYYHG---KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRFCDSFYQGKN 241
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
I + S + + V + D
Sbjct: 242 PNIAILSKRSINPSSKVFSTPNRLVNTFHDPKDLP------------------------- 276
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ +G +EGG + S + +D ++L+
Sbjct: 277 --LEKGFN--FIEGGWGLFESLRDK--IDVLLLH 304
>gi|118593750|ref|ZP_01551119.1| hypothetical protein SIAM614_03553 [Stappia aggregata IAM 12614]
gi|118433660|gb|EAV40323.1| hypothetical protein SIAM614_03553 [Stappia aggregata IAM 12614]
Length = 189
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 13/91 (14%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI---GRGVT--AYGGCPHAEV 57
+ D + A +R T +P CL+ DG V+ G G + HAE
Sbjct: 31 NDKDIALLRRAFEIARQAR-ETGDHP-FGCLLAGPDGDVLMEQGNGYSAEGQDMTAHAER 88
Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHYG 83
A + G T Y + EPC+
Sbjct: 89 LLATRASKRWRPDFLAGCTLYTSAEPCAMCS 119
>gi|114798136|ref|YP_761455.1| cytidine/deoxycytidylate deaminase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114738310|gb|ABI76435.1| cytidine/deoxycytidylate deaminase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 146
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYGGC 52
M+ A+ +R G V ++V G ++G G G
Sbjct: 1 MARAMELAREAAKAGEV----PVGAVVVDPETGEIVGEGYNRPVGT 42
>gi|297568295|ref|YP_003689639.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924210|gb|ADH85020.1| CMP/dCMP deaminase zinc-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 161
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIV-KDGIVIG------RGVTAYGGC 52
P + D M AL +R G V L++ + G ++ G G
Sbjct: 9 PPAPKDTSLMHQALEAARAAAARGEV----PVGALLIDRQGEILAVDGNRTIGDHDPSG- 63
Query: 53 PHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ L A G T YVTLEPC
Sbjct: 64 -HAEIVVLRRAAARIGNHRLTGTTLYVTLEPCLMC 97
>gi|150017101|ref|YP_001309355.1| deaminase-reductase domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149903566|gb|ABR34399.1| bifunctional deaminase-reductase domain protein [Clostridium
beijerinckii NCIMB 8052]
Length = 189
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V + + + + + N ++ + + L + + + GGA++ +
Sbjct: 73 EKEVWKLIHSKEKYVFSRTQIATNNQATFINENILEEVNKLKNKPGKDIWLYGGASLITT 132
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
FIN LVD L +++GEG + N V F
Sbjct: 133 FINLGLVDEFRLSIHPVILGEG--KPLFNDIKQRVNLKMVNTRTF 175
>gi|327261885|ref|XP_003215757.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Anolis
carolinensis]
Length = 160
Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR 68
A + + + G V CL+V + VIG+G HAE+ A+++A +
Sbjct: 1 MAAKEALEN-GEV----PVGCLMVYNNEVIGKGKNEVNETKNATRHAEMVAIDQAIDWCH 55
Query: 69 G-----------ATAYVTLEPCSHYGRSPPCA------QFIIECGIRRVVVCVDDPDVRV 111
YVT+EPC + ++ +
Sbjct: 56 KQKKRMEEVFLHTVLYVTVEPCIMCAAALRMMKIPLVVYGCQNERFGGCGSVLNISSDTL 115
Query: 112 SGRGLQWLSQKGII 125
+ G + G
Sbjct: 116 TDTGEPFQCIAGYR 129
>gi|323498975|ref|ZP_08103958.1| deaminase-reductase domain-containing protein [Vibrio sinaloensis
DSM 21326]
gi|323316087|gb|EGA69115.1| deaminase-reductase domain-containing protein [Vibrio sinaloensis
DSM 21326]
Length = 177
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+L+ L RG L ++GG V SF L+D +I+ +++G G E
Sbjct: 97 PQLVASLHQRGYQELYIDGGKTV-QSFAKHDLIDELIITTIPVLLGGGA--PLFGELESL 153
Query: 336 KNFMCVRRD-YFGSDVCLEYIGKN 358
+N+ V + + V ++ +
Sbjct: 154 QNYQLVDSQVHLDALVQSRFLRRR 177
>gi|284045786|ref|YP_003396126.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283950007|gb|ADB52751.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 199
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 5/125 (4%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ LD + V A +
Sbjct: 61 MGRNMFSPGRGAWDLDWRGWWGQDPPYHAPVFVLTHHERAPLAMDGGTTFHFVTDGIEAA 120
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEG 332
L G + + GGAA + ++ + L+D + L+ + +++G G G P+ E
Sbjct: 121 LERARAAAGDRDVSIAGGAATVNQYLAAGLIDELRLHVAPVLLGAGERLLDGAPNAQLEL 180
Query: 333 YLEKN 337
E
Sbjct: 181 LGEPR 185
>gi|114800381|ref|YP_760090.1| riboflavin biosynthesis protein RibD domain-containing protein
[Hyphomonas neptunium ATCC 15444]
gi|114740555|gb|ABI78680.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Hyphomonas neptunium ATCC 15444]
Length = 176
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ +R + ++ + P E++ +
Sbjct: 15 YVDHMAFAPDAELFRHFIEDVRASAGTIYGRTMYEVMRYWDEEQPGWDAPEHEYAQVWRK 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSL------LVE-GGAAVAHSFINSRLVDSII 312
K ++ L++ + V L +E G +AHS L+D
Sbjct: 75 QPKWVVSGTLKSVGPNATLVSDNLEGTVRDLKSRLDGYMEVSGPQLAHSLTERGLIDEYR 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+Y +V+G G P D G + + L Y+
Sbjct: 135 IYLHPVVLG-QGTPYFAGPR---PRLRLTATDRIGPEVIRLTYVP 175
>gi|45656557|ref|YP_000643.1| hypothetical protein LIC10659 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45599792|gb|AAS69280.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 182
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
T+ + + + ++L L + TA++ II T+ ++
Sbjct: 19 PNSTIDWHVVDEEFNKYTIDFLDQVDVLLFGRITYELMANYWPTAIVDNPIIATKMNEIT 78
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS---LLVEGGAAVAHSFINSRLVDSII 312
+ + + + + + G +++A + I +L+D +
Sbjct: 79 KIVFSKTLANVKWKNSILVYNNVKKEVAKLKKQQGKDIAIFGSSSLAATLIEQKLIDEVR 138
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
++ + IV+GEG + + + ++ F +V L Y
Sbjct: 139 IFINPIVLGEG--KTLFQGIQNRISLKLIQTKTFQSGNVLLYYQP 181
>gi|119026595|ref|YP_910440.1| cytidine and deoxycytidylate deaminase [Bifidobacterium
adolescentis ATCC 15703]
gi|118766179|dbj|BAF40358.1| possible cytidine and deoxycytidylate deaminase [Bifidobacterium
adolescentis ATCC 15703]
Length = 157
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 30 SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79
V +++ DG VIGRG T HAEV+A+ EA T VTLEPC
Sbjct: 32 PVGAVVLAADGRVIGRGRNLRETHADPLAHAEVKAMAEAAASLDTWNLADCTLVVTLEPC 91
Query: 80 SHYGRSP 86
+
Sbjct: 92 PMCAGAC 98
>gi|218675147|ref|ZP_03524816.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
GR56]
Length = 120
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
G +A S + L+D ++Y +V+G G P + D G D + L
Sbjct: 60 AGPDLARSLTDLGLIDEYVIYLHPVVLGH-GRPYFAGPR---PPLRLMANDRIGEDVIRL 115
Query: 353 EYIG 356
Y+
Sbjct: 116 VYVP 119
>gi|325676856|ref|ZP_08156529.1| guanine deaminase [Rhodococcus equi ATCC 33707]
gi|325552404|gb|EGD22093.1| guanine deaminase [Rhodococcus equi ATCC 33707]
Length = 188
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M+ A R + V P +I +DG ++ RG H E++A+ +A +
Sbjct: 7 MNEACRLAIESVENNWGGP-FGAVIARDGDIVARGQNRVLLTGDVTAHGEIEAIRKAVQV 65
Query: 67 ARGATAYVTLE 77
A ++ E
Sbjct: 66 LNAAAPSISRE 76
>gi|84686242|ref|ZP_01014137.1| cytidine and deoxycytidylate deaminase family protein
[Maritimibacter alkaliphilus HTCC2654]
gi|84665769|gb|EAQ12244.1| cytidine and deoxycytidylate deaminase family protein
[Rhodobacterales bacterium HTCC2654]
Length = 150
Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++V DG ++ + HAE + A E YVTLEPC
Sbjct: 25 PVGAVLVGPDGTIVAQAGNRTRELSDPTAHAETLVIRAACAAAGSERLPDHDLYVTLEPC 84
Query: 80 SHY 82
Sbjct: 85 PMC 87
>gi|328943349|ref|ZP_08240814.1| competence protein comEB [Atopobium vaginae DSM 15829]
gi|327491318|gb|EGF23092.1| competence protein comEB [Atopobium vaginae DSM 15829]
Length = 165
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 35/110 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---------- 53
++D FM A + + V I + ++ G G P
Sbjct: 18 TWDEFFMRVAAAAAMRSK---DPHTQVGACIADSNDRILSVGY---NGTPTGINDDEFPW 71
Query: 54 ---------------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRS 85
HAE AL + ++ +GATAYVTL PC +
Sbjct: 72 ESSADPLRDKHNFVIHAEANALLNYRGSLKDMQGATAYVTLFPCQECAKM 121
>gi|317476731|ref|ZP_07935974.1| RibD domain-containing protein [Bacteroides eggerthii 1_2_48FAA]
gi|316906906|gb|EFV28617.1| RibD domain-containing protein [Bacteroides eggerthii 1_2_48FAA]
Length = 172
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQENDMLVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y +++G+G L + + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLDNGVV 162
>gi|288917132|ref|ZP_06411502.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288351501|gb|EFC85708.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 276
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGS 348
+L EGG ++ F + L+D + + ++ G G + + V
Sbjct: 192 VLTEGGPSLHAQFAQAGLLDEACVTLAPVLAGPGRLGMMTGPAWAAPLDLRLVHVLEESD 251
Query: 349 DVCLEYIGK 357
+ L +
Sbjct: 252 VLFLRLARR 260
>gi|209548316|ref|YP_002280233.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534072|gb|ACI54007.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 176
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG +A + L+D LY +V+G G P V D G D V L
Sbjct: 116 GGPELAGGLTDLGLIDEYRLYFHPVVLGH-GKPFFTGPR---PPLRLVASDLIGGDAVRL 171
Query: 353 EYIG 356
Y+
Sbjct: 172 TYVP 175
>gi|149538332|ref|XP_001507477.1| PREDICTED: similar to DEADC1 protein, partial [Ornithorhynchus
anatinus]
Length = 121
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----------GEEARGATAYV 74
V CL+V + ++G G HAE+ A+++ E + YV
Sbjct: 11 PVGCLMVYNNKIVGMGRNEVNETKNATRHAEMVAIDQVLNWCLRRGKNPTEVFQRTVLYV 70
Query: 75 TLEPCSHYGRSPPCAQ 90
T+EPC + +
Sbjct: 71 TVEPCIMCAAALRIMR 86
>gi|260436012|ref|ZP_05789982.1| tRNA-adenosine deaminase [Synechococcus sp. WH 8109]
gi|260413886|gb|EEX07182.1| tRNA-adenosine deaminase [Synechococcus sp. WH 8109]
Length = 167
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 9 RFMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALE 61
R+M L+ + G VA +I+ G IG G HAE+ AL+
Sbjct: 19 RWMDVLLQRAEEAGAEGEV----PVAAVILDGQGRAIGHGRNRRQNDRDPLGHAELVALQ 74
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A T VTLEPC
Sbjct: 75 QAAIVQDDWRFNNCTLIVTLEPCPMC 100
>gi|86140015|ref|ZP_01058579.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter sp. MED193]
gi|85823265|gb|EAQ43476.1| cytidine and deoxycytidylate deaminase family protein
[Roseobacter sp. MED193]
Length = 148
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEP 78
V ++V DG + + HAE+ L EA E +G YVTLEP
Sbjct: 23 PVGAVLVAPDGRIAAQAGNRTRELSDPTAHAEILVLREACAAGKTERLQGFDLYVTLEP 81
>gi|123456967|ref|XP_001316215.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
gi|121898915|gb|EAY03992.1| RibD C-terminal domain containing protein [Trichomonas vaginalis
G3]
Length = 328
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEK 336
G+ +L V GGA + SF+ + +VD + + + G+G +P
Sbjct: 146 KFGINTLGVLGGATINWSFVQAGIVDELSICL--VAAGDGANKSLTLFEKAPQIVENSPV 203
Query: 337 NFMCVRRDYFGSD-VCLEYIGKNLCLQE 363
F D + + L+Y K +E
Sbjct: 204 EFELKSIDRLSRNGLWLKYTPKAARNEE 231
>gi|33322616|gb|AAQ07040.1|AF496357_2 deoxycytidylate deaminase [Lactobacillus delbrueckii subsp. lactis]
Length = 108
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA----------- 55
FM AL ++ T V ++VKD ++ G + G H
Sbjct: 9 QYFMMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGH 65
Query: 56 -------EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 66 CVRTIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKH 105
>gi|255035399|ref|YP_003086020.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254948155|gb|ACT92855.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 206
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + ++GGA + F+N+ L+D +++S +++G GI
Sbjct: 125 ALAKAKQSAGDRDVRIQGGADIIQQFLNAGLIDEFTIHQSPVMLGS-GIRLFDHIDIDRF 183
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
F + Y K
Sbjct: 184 EFTIKNVQPSALTTHITYEVKR 205
>gi|126651196|ref|ZP_01723406.1| Guanine deaminase [Bacillus sp. B14905]
gi|126592034|gb|EAZ86100.1| Guanine deaminase [Bacillus sp. B14905]
Length = 152
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 31/135 (22%), Gaps = 13/135 (9%)
Query: 30 SVACLIVKDGIVIGR-GVT---AYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80
IV+ +I G T HAE+ A+ EA ++ Y T EPC
Sbjct: 22 PFGATIVRGDEIIAVVGNTMMRDTDITAHAEIVAIREASKKLGTMDLSDCVIYATCEPCP 81
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140
A +D V G + + +
Sbjct: 82 MC----VSAIIWSGIKEVHYCNTAEDAHVHGFSDMHIRDYLTGKDKSVLNMHKMETPEEC 137
Query: 141 YLTRQVEKRSHITLK 155
K
Sbjct: 138 DALFHHFNNKMANSK 152
>gi|148270280|ref|YP_001244740.1| dihydrofolate reductase-like protein [Thermotoga petrophila RKU-1]
gi|281412586|ref|YP_003346665.1| dihydrofolate reductase region [Thermotoga naphthophila RKU-10]
gi|147735824|gb|ABQ47164.1| Dihydrofolate reductase-like protein [Thermotoga petrophila RKU-1]
gi|281373689|gb|ADA67251.1| dihydrofolate reductase region [Thermotoga naphthophila RKU-10]
Length = 169
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L G+G + V GG V F+ +LVD + + V G+ GIP +E
Sbjct: 85 DVVKFLEGKGYEKVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGK-GIP-FFDEFEGYF 142
Query: 337 NFMCVRRDYFGS--DVCLEYIGKN 358
+ + L+Y +
Sbjct: 143 PLKLLEMRRLNERGTLFLKYSVEK 166
>gi|70730992|ref|YP_260733.1| riboflavin biosynthesis protein RibD domain-containing protein
[Pseudomonas fluorescens Pf-5]
gi|68345291|gb|AAY92897.1| RibD C-terminal domain [Pseudomonas fluorescens Pf-5]
Length = 182
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
L+ L G + ++GG + +F+ + L+D + L R +++G G P
Sbjct: 95 QPVALVAQLRAEGWRTAYIDGG-TLIQAFLQAGLIDEMTLTRVPVLLG-TGRPLF-GALP 151
Query: 334 LEKNFMCVRRDYFGSDVC-LEYIGKN 358
+ + CV ++ + Y +
Sbjct: 152 RDLHLRCVDSRWYRDGLVSTRYRVER 177
>gi|295698536|ref|YP_003603191.1| tRNA-specific adenosine deaminase [Candidatus Riesia pediculicola
USDA]
gi|291157478|gb|ADD79923.1| tRNA-specific adenosine deaminase [Candidatus Riesia pediculicola
USDA]
Length = 171
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 16/90 (17%)
Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58
D +M+ +L ++ +G + +++ ++ HAE+
Sbjct: 13 KKDFFWMNKSLDLAKKSEILGEI----PIGAVLIYQDNIVASSGNEVILRNDPSAHAEII 68
Query: 59 ALEEAGEEARGA------TAYVTLEPCSHY 82
+ E + + T YVT+ PC
Sbjct: 69 VIREGAKHFKNYRLKENLTIYVTIFPCIMC 98
>gi|288920069|ref|ZP_06414388.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288348552|gb|EFC82810.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 188
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 11/164 (6%)
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
+ + + Q+ + + S T P E +
Sbjct: 24 SWGGPPSDELFQWWLDQDRASGVALYGRKL-WETMSSYWPTGDQLPGATPAEIEFAQNWR 82
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSI 311
K + +L+T +T L E GGA +A + + + L+D
Sbjct: 83 DTPKVVFSSTIDKVDWNTRLVTGDAIAEITRLKAEDGGPMSIGGATLAGAALRAGLIDEY 142
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ ++ G G P N V F G V Y
Sbjct: 143 AVVTHPVLTGG-GTPFFTALDSW-VNLNLVETRTFPGGVVLTRY 184
>gi|281501005|pdb|3KY8|A Chain A, Crystal Structure Of Putative Riboflavin Biosynthesis
Protein (Yp_001092907.1) From Shewanella Sp. Pv-4 At
2.12 A Resolution
gi|281501006|pdb|3KY8|B Chain B, Crystal Structure Of Putative Riboflavin Biosynthesis
Protein (Yp_001092907.1) From Shewanella Sp. Pv-4 At
2.12 A Resolution
Length = 197
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L +G L ++GG + +F+ L+D ++ R I++G G+P E
Sbjct: 117 DIIADLNAKGFNELYIDGGVTI-QNFLKEDLIDEXVITRFPILLGG-GVPLF-GELESSL 173
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
+F ++ + + Y K
Sbjct: 174 SFNVIKSEVVLDSLTQTTYHRKR 196
>gi|148912877|ref|YP_001293456.1| hypothetical protein ORF049 [Pseudomonas phage 73]
Length = 155
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 26/95 (27%)
Query: 3 VSSFDARFMSAALRFSRWHVGLT-STNPSVACLIVKDGI-VIGRGVTAYGGC-------- 52
+S +DARF + + G + + IV+ + G
Sbjct: 11 LSKWDARF----IELAEHVAGWSKGPRKRIGAAIVRPNRSIASLGYNGPPRGFDDAVFLN 66
Query: 53 ----------PHAEVQALEEA--GEEARGATAYVT 75
HAE A+ +A GE+ T YV+
Sbjct: 67 MTRDEQHAVVIHAEDNAIRQAAPGEDLSACTLYVS 101
>gi|256080812|ref|XP_002576670.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
gi|238661949|emb|CAZ32907.1| cytidine/deoxycytidylate deaminase-related [Schistosoma mansoni]
Length = 89
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66
M A + + + P V C V +G VI G HAE+ + +
Sbjct: 1 MDIAFELACEAL-RCNEVP-VGCAFVYNGEVIASGRNEVNATRDATQHAEMVTIRRLEQW 58
Query: 67 ARG-----------ATAYVTLEPCSHY 82
R +VT+EPC
Sbjct: 59 CRNNQKELDKILVECDLFVTVEPCIMC 85
>gi|68489028|ref|XP_711627.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
gi|68489169|ref|XP_711559.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
gi|46432872|gb|EAK92335.1| hypothetical protein CaO19.6341 [Candida albicans SC5314]
gi|46432945|gb|EAK92405.1| hypothetical protein CaO19.13697 [Candida albicans SC5314]
Length = 304
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-------------SRLVDSIILYRSQI 318
+ +++L L G+ S+++EGGA + + ++ +L+DS+I+ + +
Sbjct: 206 SDNWREILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDDDQKLIDSVIITIAPV 265
Query: 319 VIGEGGI 325
+G G+
Sbjct: 266 FLGCNGV 272
>gi|294806932|ref|ZP_06765756.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|294445857|gb|EFG14500.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 172
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDILVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y +++G+G L + + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLDNGVV 162
>gi|298113078|gb|ADI58667.1| hypothetical protein [Streptomyces nodosus subsp. asukaensis]
Length = 192
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
L GGA + +F+ LVD +Y ++IG G + + FGS V
Sbjct: 121 LCLGGADLGATFMRLDLVDEYRIYVHPVLIGRG--KPLFPDSAVRTGLRLAETREFGSGV 178
Query: 351 CL 352
L
Sbjct: 179 VL 180
>gi|321313637|ref|YP_004205924.1| putative oxidoreductase [Bacillus subtilis BSn5]
gi|320019911|gb|ADV94897.1| putative oxidoreductase [Bacillus subtilis BSn5]
Length = 188
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K + + + + + + N ++ + + L + + + G
Sbjct: 66 KNEDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKKSGKDIWLYG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GA++ +FIN LVD L +V+G G P + + N V F
Sbjct: 126 GASLITTFINLGLVDEFRLSIHPVVLG-EGKPLFI-DVKQRINLKMVNTRTF 175
>gi|15673123|ref|NP_267297.1| dCMP deaminase [Lactococcus lactis subsp. lactis Il1403]
gi|281491636|ref|YP_003353616.1| dCMP deaminase [Lactococcus lactis subsp. lactis KF147]
gi|12724103|gb|AAK05239.1|AE006346_8 dCMP deaminase [Lactococcus lactis subsp. lactis Il1403]
gi|281375354|gb|ADA64867.1| dCMP deaminase [Lactococcus lactis subsp. lactis KF147]
gi|326406687|gb|ADZ63758.1| dCMP deaminase [Lactococcus lactis subsp. lactis CV56]
Length = 147
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 27/105 (25%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT------------- 47
S D F ++ T + V L+V +G ++ G
Sbjct: 7 TRPSKDEYFKEIVQVVAKRS---TCNHAQVGALLVSPNGQLLSTGYNGAVSGMPHCTDIG 63
Query: 48 ---AYGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE A+ +A G GA Y TL PC
Sbjct: 64 CTEDKYGHCVATVHAEQNAIAQAAKHGVSPEGAILYTTLFPCLAC 108
>gi|116511986|ref|YP_809202.1| deoxycytidylate deaminase [Lactococcus lactis subsp. cremoris SK11]
gi|125624228|ref|YP_001032711.1| hypothetical protein llmg_1416 [Lactococcus lactis subsp. cremoris
MG1363]
gi|116107640|gb|ABJ72780.1| Deoxycytidylate deaminase [Lactococcus lactis subsp. cremoris SK11]
gi|124493036|emb|CAL97999.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071008|gb|ADJ60408.1| hypothetical protein LLNZ_07300 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 146
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT---------------- 47
S D F ++ T + V L+V +G ++ G
Sbjct: 9 SKDEYFKEIVQVVAKRS---TCNHAQVGALLVSPNGQLLSTGYNGAVSGMPHCTDIGCTE 65
Query: 48 AYGG----CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
G HAE A+ +A G GA Y TL PC
Sbjct: 66 DKYGHCVATVHAEQNAIAQAAKHGVSPEGAILYTTLFPCLAC 107
>gi|89895500|ref|YP_518987.1| hypothetical protein DSY2754 [Desulfitobacterium hafniense Y51]
gi|219669936|ref|YP_002460371.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense DCB-2]
gi|89334948|dbj|BAE84543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540196|gb|ACL21935.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Desulfitobacterium hafniense DCB-2]
Length = 240
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
+ + G+ SL++ GG + SFI + + D + + + G P+ E
Sbjct: 153 AMAKLKSLFGIQSLMLGGGGVLNWSFIQAGMCDELSVLIAAAADGSSETPTLFEARSGLA 212
Query: 334 --LEKNFMCVRRD-YFGSDVCLEYIGKN 358
F + G V L Y
Sbjct: 213 AESPVGFTLKSAEVKEGGSVWLRYTVNK 240
>gi|270293222|ref|ZP_06199433.1| conserved hypothetical protein [Streptococcus sp. M143]
gi|270279201|gb|EFA25047.1| conserved hypothetical protein [Streptococcus sp. M143]
Length = 173
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQCF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|311277409|ref|YP_003939640.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
gi|308746604|gb|ADO46356.1| CMP/dCMP deaminase zinc-binding protein [Enterobacter cloacae SCF1]
Length = 151
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 33/152 (21%), Gaps = 14/152 (9%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---AYGGCPHAEVQALEEAGE 65
+M A+ + H + IV++G V+ T HAE+ A+ EA +
Sbjct: 3 YMKLAVD-ATIHGMENNIGGPFGATIVRNGEVVVAISNTMTRDTDPSAHAELVAIREACK 61
Query: 66 E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
+ Y T EPC D
Sbjct: 62 KRGTFDLSDCEIYATCEPCPMC----VAVIIWTGIKKVYYCSTHHDAHTHGFSDQHLRDY 117
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
G +
Sbjct: 118 FSGKDTSCLDMINVAKREDCDRLFSYFHEIQS 149
>gi|297563744|ref|YP_003682718.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296848192|gb|ADH70212.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 160
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
+ AA+ + T P V +++ DG V+G G HAEV AL A
Sbjct: 11 LRAAIAEGEAAL-ETGDVP-VGAVVLDADGAVLGTGRNEREATGDPTAHAEVLALRAAAR 68
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 69 ARGEWRLGGCTLVVTLEPCTMC 90
>gi|23009674|ref|ZP_00050635.1| COG0262: Dihydrofolate reductase [Magnetospirillum magnetotacticum
MS-1]
Length = 185
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
DS AP+ +VT + P R + + I + + + + G
Sbjct: 57 DGAEDPDSYAEDYEFQAPIFVVTHHPLP--VPPRRNERLWIEFVTDGVEEAVRRAVEAAG 114
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ GGA + + + LVD + + +++G G L +G + V D
Sbjct: 115 DRDVTFVGGADLFRQLLAADLVDELAVDVMPVLLGGGVR---LFDGGVPATLEKVSVDEV 171
Query: 347 GSDVCLEYIG 356
G L Y
Sbjct: 172 GVRTALRYRV 181
>gi|315504158|ref|YP_004083045.1| cmp/dcmp deaminase zinc-binding protein [Micromonospora sp. L5]
gi|315410777|gb|ADU08894.1| CMP/dCMP deaminase zinc-binding protein [Micromonospora sp. L5]
Length = 141
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNP----SVAC----LIVKDGIVIGRGVTAYGGCPH 54
++ D F+ A+ + G + P V LI V+ H
Sbjct: 1 MTPDDEAFLRRAVELADRA-GASGERPFASLLVGADGTVLIEDHNTVVS----DKDVTAH 55
Query: 55 AEV-----QALEEAGEEARGATAYVTLEPCSHYGRSPPC 88
E+ A + A E A T Y + +PC +
Sbjct: 56 PELKLARWAARQLAPEAAVATTMYTSCQPCPMCTVAINA 94
>gi|187923289|ref|YP_001894931.1| bifunctional deaminase-reductase domain protein [Burkholderia
phytofirmans PsJN]
gi|187714483|gb|ACD15707.1| bifunctional deaminase-reductase domain protein [Burkholderia
phytofirmans PsJN]
Length = 220
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 28/109 (25%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
D + K + V + +
Sbjct: 74 WILGRNMFSPDRGPWPDMSWKGWWGDNPPYHVPVFIMTHHARPPIEMEGGTTFHFVTGGV 133
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ L G + + GG ++ L+D + + + +++G+G
Sbjct: 134 RETLERAREAAGGMDVRIGGGPNTIQQYLRESLIDELHIAIAPVLLGQG 182
>gi|291300132|ref|YP_003511410.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290569352|gb|ADD42317.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 187
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG +A F ++ L+D + L + + +G G L L + V G
Sbjct: 119 KNIWILGGGELAGHFADAGLLDELNLMLAPVTLGAGA--PVLPRRLLSTDLRLVDMTRHG 176
Query: 348 SDVCLEYIGK 357
L Y +
Sbjct: 177 QMAQLTYELR 186
>gi|256425642|ref|YP_003126295.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
gi|256040550|gb|ACU64094.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
Length = 176
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 42/151 (27%), Gaps = 2/151 (1%)
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265
+ GL + + K ++ V+ + ++
Sbjct: 26 CFNDQDYGLNDFFSRVDTIFIGRKSYEMAQQHADNNNGEVVPGMPRMKEYVFSNTLRQVK 85
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
D + + + + + GGA++ +F+ LVD + L I++G G
Sbjct: 86 EGAILVAGDSIAEVRKIKEQAGKDIWLFGGASLTDAFMREGLVDELWLSVHPIILGAG-- 143
Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ + + + +
Sbjct: 144 KPLFHPQENRTRLTLLDSKTYNTGLVSLWYK 174
>gi|291486714|dbj|BAI87789.1| hypothetical protein BSNT_06252 [Bacillus subtilis subsp. natto
BEST195]
Length = 188
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K + + + + + + N ++ + + L + + + G
Sbjct: 66 KDEDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKKSGKDIWLYG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GA++ +FIN LVD L +V+G G P + + N V F
Sbjct: 126 GASLITTFINLGLVDEFRLSIHPVVLG-EGKPLFI-DVKQRINLKMVNTRTF 175
>gi|300779133|ref|ZP_07088991.1| dihydrofolate reductase family protein [Chryseobacterium gleum ATCC
35910]
gi|300504643|gb|EFK35783.1| dihydrofolate reductase family protein [Chryseobacterium gleum ATCC
35910]
Length = 177
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ +GGA + + + + L+D I+ +++G G ++G E+ + F
Sbjct: 108 KNIYCDGGAEIINELLKNELIDEFIISVIPVLLGSGTK--LFKDGRPEQALEFMTSKTFE 165
Query: 348 SDVC-LEYIGKN 358
+ + L Y K
Sbjct: 166 TGLIQLRYKRKK 177
>gi|126311160|ref|XP_001380965.1| PREDICTED: similar to DEADC1 protein [Monodelphis domestica]
Length = 182
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 16 RFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA------ 63
++ + G V CL+V + V+ +G HAE+ A+++
Sbjct: 22 AQAKEALENGEV----PVGCLMVYNNKVLAKGRNEVNQTKNATRHAEMVAIDQVLEWCHR 77
Query: 64 -----GEEARGATAYVTLEPCSHY 82
E YVT+EPC
Sbjct: 78 YGKSPTEVFEHTVLYVTVEPCIMC 101
>gi|116669457|ref|YP_830390.1| cytosine deaminase [Arthrobacter sp. FB24]
gi|116609566|gb|ABK02290.1| Cytosine deaminase [Arthrobacter sp. FB24]
Length = 176
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEEAG--EEARGATAYVTLEPCSHY 82
+ + + +I G G P H E+ AL AG + R T Y TL PC+
Sbjct: 43 PIGAALARGNELIASGHNERVQHGDPIAHGEMAALRAAGRQKSYRDTTLYTTLAPCAMC 101
>gi|217971680|ref|YP_002356431.1| bifunctional deaminase-reductase domain-containing protein
[Shewanella baltica OS223]
gi|217496815|gb|ACK45008.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS223]
Length = 183
Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 101 ISEQLKTRGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-GDLAQALQ 157
Query: 338 FMCVRRDYFGSD-VCLEYIGKNL 359
M + + + V Y +
Sbjct: 158 LMPIHTQQYDNGYVQTRYRVIDE 180
>gi|315639946|ref|ZP_07895077.1| dihydrofolate reductase [Enterococcus italicus DSM 15952]
gi|315484371|gb|EFU74836.1| dihydrofolate reductase [Enterococcus italicus DSM 15952]
Length = 108
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG + S + S L+D + + + +G G P EG E+ V G
Sbjct: 28 KWIWIVGGGGLVTSLMASELIDDYWIQLAPVFLGSGKRLFP--EGDYEQRVTFVEATQMG 85
Query: 348 SDVCLEY 354
V L Y
Sbjct: 86 EMVELHY 92
>gi|254454396|ref|ZP_05067833.1| cytosine deaminase [Octadecabacter antarcticus 238]
gi|198268802|gb|EDY93072.1| cytosine deaminase [Octadecabacter antarcticus 238]
Length = 145
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V +++ G+VI HAE+ A+ A E G YVTLEPC
Sbjct: 18 PVGAVVIGPTGLVIATAGNRTRELNDPTAHAEILAIRAACAALGQERLTGHDIYVTLEPC 77
Query: 80 SHY 82
Sbjct: 78 PMC 80
>gi|157150202|ref|YP_001449667.1| reductase [Streptococcus gordonii str. Challis substr. CH1]
gi|157074996|gb|ABV09679.1| reductase [Streptococcus gordonii str. Challis substr. CH1]
Length = 173
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVRPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|70699875|gb|AAZ06844.1| putative dihydrofolate reductase [Microbacterium arborescens]
Length = 204
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 8/120 (6%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
+ + P + T + P A + L I G + V G
Sbjct: 69 RWHEFHGDRPTFVFTSRELPRPTGADVRFV------SGPVSTVLPRIRQAAGDHDVWVVG 122
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G +A F ++ +D I + + + +G G L + G+ L Y
Sbjct: 123 GGDLAGQFFDADALDQIAVSVAPVTLGGGA--PVLPRRIESDRLSLRSAEQVGAFARLVY 180
>gi|325291364|ref|YP_004267545.1| CMP/dCMP deaminase zinc-binding protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324966765|gb|ADY57544.1| CMP/dCMP deaminase zinc-binding protein [Syntrophobotulus
glycolicus DSM 8271]
Length = 148
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 36/134 (26%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
P S+D F+ A SR L +IVKD I++ G
Sbjct: 4 PRPSWDEYFLELAGLISRRSTCLRRNY---GAVIVKDNIIVSTGYNGAARGEDNCIDIKK 60
Query: 49 --------YGGCP-------HAEVQALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQF 91
G HAE A+ AG+ + + T YV + G P
Sbjct: 61 CTREERNIPPGERYELCVAVHAEQNAII-AGDPVKMQNGTIYVAGYHGN--GEPAPSEPC 117
Query: 92 IIECGIRRVVVCVD 105
++ + + +
Sbjct: 118 LLCRRMIKNAMIKR 131
>gi|50303913|ref|XP_451904.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641036|emb|CAH02297.1| KLLA0B08437p [Kluyveromyces lactis]
Length = 152
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG--GCP--HAE 56
++ +D + M A + P CLI + G ++G G G P H E
Sbjct: 1 MAEWDKKGMDKAYEEAAIG-YKEGGVPIGGCLI-DNLTGEILGSGHNMRFQKGSPTLHGE 58
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
LE AG +G T Y TL PC
Sbjct: 59 TSTLENAG-RLKGSVYKHCTMYTTLSPCDMC 88
>gi|261330463|emb|CBH13447.1| deaminase, putative [Trypanosoma brucei gambiense DAL972]
Length = 225
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 48/117 (41%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGI-----------------VIGRG--VTA 48
FM AAL+ + + G V C++VK ++ RG T
Sbjct: 27 FMQAALKEATCALEEGEV----PVGCVLVKADSSTAAQAQAGDDLALQKLIVARGRNATN 82
Query: 49 YGGC--PHAEVQA----LEEA-----------------GEEARGATAYVTLEPCSHY 82
G HAE A L +A ++ YV +EPC
Sbjct: 83 RKGHALAHAEFVAVEELLRQATAGTSENIGGGGNCGAVSQDLADYVLYVVVEPCIMC 139
>gi|72392897|ref|XP_847249.1| deaminase [Trypanosoma brucei TREU927]
gi|62176083|gb|AAX70202.1| deaminase, putative [Trypanosoma brucei]
gi|70803279|gb|AAZ13183.1| deaminase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 225
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 48/117 (41%)
Query: 10 FMSAALRFSRWHV--GLTSTNPSVACLIVKDGI-----------------VIGRG--VTA 48
FM AAL+ + + G V C++VK ++ RG T
Sbjct: 27 FMQAALKEATCALEEGEV----PVGCVLVKADSSTAAQAQAGDDLALQKLIVARGRNATN 82
Query: 49 YGGC--PHAEVQA----LEEA-----------------GEEARGATAYVTLEPCSHY 82
G HAE A L +A ++ YV +EPC
Sbjct: 83 RKGHALAHAEFVAVEELLRQATAGTSENIGGGGNCGAVSQDLADYVLYVVVEPCIMC 139
>gi|296166141|ref|ZP_06848586.1| cytosine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898550|gb|EFG78111.1| cytosine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 150
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG--GCP--HA 55
M + + A M AL +R + + + DG+++GRG G P HA
Sbjct: 1 MTLPA--AAMMDVALDEARAGLAEGGI--PIGAALFTADGVLLGRGRNRRVQRGDPSLHA 56
Query: 56 EVQALEEAG--EEARGATAYVTLEPCSHYG 83
EV A AG + R TL PC +
Sbjct: 57 EVDAFRAAGRQRDYRSTVMVTTLAPCWYCS 86
>gi|51247069|ref|YP_066952.1| dihydrofolate reductase [Desulfotalea psychrophila LSv54]
gi|50878106|emb|CAG37962.1| probable dihydrofolate reductase [Desulfotalea psychrophila LSv54]
Length = 199
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ L +G T+L ++GG + SF+ ++D +++ + I++G G S +
Sbjct: 120 EVTQQLNQQGFTNLYIDGG-KLIQSFLKLDMIDELVISKIPILLGGGT--SLFGDLQSHL 176
Query: 337 NFMCVRRDYFGS 348
F V + +
Sbjct: 177 MFEHVSTEVLLN 188
>gi|207109478|ref|ZP_03243640.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori
HPKX_438_CA4C1]
Length = 146
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 1 MPVSSFDARFMSA-------ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGC 52
MP FM L + H L NPSVAC ++ K+ ++
Sbjct: 1 MPFFP----FMRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKT 56
Query: 53 PHAEVQALEEAGEEAR 68
HAEV A + A + R
Sbjct: 57 SHAEVLAAKSALKILR 72
>gi|119964333|ref|YP_947807.1| RibD C-terminal domain-containing protein [Arthrobacter aurescens
TC1]
gi|119951192|gb|ABM10103.1| putative RibD C-terminal domain protein [Arthrobacter aurescens
TC1]
Length = 180
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 5/119 (4%)
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ P + + LL +
Sbjct: 56 YRWLMEHEPGKWPYPGTPCWVFTHHEYSAPAGSDITFVRGDVREFAPDLLKDAGDKN--- 112
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG + F N+ L+ +I+ +V+G G PL V G
Sbjct: 113 VWLVGGGDLVAQFANAGLLHEMIVTIIPVVLGAGKRLLPLNGPTAP--LELVSSKILGG 169
>gi|163792387|ref|ZP_02186364.1| hypothetical protein BAL199_16108 [alpha proteobacterium BAL199]
gi|159182092|gb|EDP66601.1| hypothetical protein BAL199_16108 [alpha proteobacterium BAL199]
Length = 163
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQALEE 62
D + + AL +R + P ++V DG V+ GG H E AL
Sbjct: 6 DLKHLRRALELAREAL-EAGDAP-FGSVLVASDGTVLAEDRNRTGGGDRTRHPEF-ALAR 62
Query: 63 -AGEEAR-----GATAYVTLEPCSHY 82
A E + GAT Y + E C
Sbjct: 63 WAAENMKPADRPGATVYTSGEHCPMC 88
>gi|301064678|ref|ZP_07205067.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
proteobacterium NaphS2]
gi|300441220|gb|EFK05596.1| cytidine and deoxycytidylate deaminase zinc-binding region [delta
proteobacterium NaphS2]
Length = 150
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 30/85 (35%)
Query: 31 VACLIVKDGIVIGRGV---------------------------TAYGGCPHAEVQALEEA 63
V ++VK+ ++ G HAE A+ +A
Sbjct: 30 VGAILVKEKRILATGYNGAPAGLKHCVEVGCLRENGSIPSGTRHELCRALHAEQNAIVQA 89
Query: 64 ---GEEARGATAYVTLEPCSHYGRS 85
G G+T Y T +PC +
Sbjct: 90 ARYGISIAGSTLYCTNKPCIICSKM 114
>gi|78183929|ref|YP_376364.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9902]
gi|78168223|gb|ABB25320.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9902]
Length = 232
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-- 322
+ + L L GV L + GGA++A + + VD++ L ++G
Sbjct: 130 FDRWIPLGHSWPERLEALYACGVRRLALLGGASLAAEVLQADCVDALQLTLVPTLLGGPH 189
Query: 323 -----GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNL 359
P PL + C + G ++ L Y + +
Sbjct: 190 TWLPVDAKPLPLSMLG-AGAWSCDGLEDLGEGEMVLRYRRQRV 231
>gi|312139695|ref|YP_004007031.1| cytidine/deoxycytidylate deaminase [Rhodococcus equi 103S]
gi|311889034|emb|CBH48347.1| putative cytidine/deoxycytidylate deaminase [Rhodococcus equi
103S]
Length = 194
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66
M+ A R + V P +I +DG ++ RG H E++A+ +A +
Sbjct: 13 MNEACRLAIESVENNWGGP-FGAVIARDGDIVARGQNRVLLTGDVTAHGEIEAIRKAVQV 71
Query: 67 ARGATAYVTLE 77
A ++ E
Sbjct: 72 LNAAAPSISRE 82
>gi|312126379|ref|YP_003991253.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311776398|gb|ADQ05884.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 171
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----G 64
M + ++ S + VA +VK+G +I + HAE+ A+ +A
Sbjct: 35 MKTLIEYASR-----SNDIPVAAAVVKNGKIISIKRNDSKKAIYHAEILAIIDATSKLST 89
Query: 65 EEARGATAYVTLEPCSHY 82
++ R +VT EPC
Sbjct: 90 KDLRSCEMFVTKEPCPMC 107
>gi|300236|gb|AAC60554.1| riboflavin biosynthesis [Saccharomyces cerevisiae]
Length = 183
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 8/151 (5%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-------LDPHFKLSLDS 234
H LR D ILVG GTVLAD+P L C+ + R I +
Sbjct: 1 MTHYLRHHHDGILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQEL 60
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
I + V++ +E + + IN K + + S++VEG
Sbjct: 61 FIKRQGKPPIVVVTSEPIIKEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEG 120
Query: 295 GAAVAHS-FINSRLVDSIILYRSQIVIGEGG 324
GA V + + S +V+S+I+ +G G
Sbjct: 121 GANVINQLLLRSDIVNSLIITIGSTFLGSSG 151
>gi|222099791|ref|YP_002534359.1| Dihydrofolate reductase [Thermotoga neapolitana DSM 4359]
gi|221572181|gb|ACM22993.1| Dihydrofolate reductase [Thermotoga neapolitana DSM 4359]
Length = 172
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
K ++ L G+G + V GG V F+ +LVD + + + G G+P
Sbjct: 81 FFNGSPKDVVEFLEGKGYREVAVIGGRTVFTQFLREKLVDEMFITIEPYLFG-RGVPFFS 139
Query: 330 EEGYLEKNFMCVRRDYFGS 348
E +
Sbjct: 140 EFDGF-FTLKLLEISKLNE 157
>gi|312262684|gb|ADQ52979.1| Cd dCMP deaminase [Aeromonas phage PX29]
Length = 182
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 54/129 (41%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
M ++ F+ A ++ ++ V +I KD I G G P
Sbjct: 1 MKTTT----FLQKAFLVAQESKCVSY---RVGAIISKDDRPISSGYNGTISGQPNCDEVA 53
Query: 54 -------------------------------------HAEVQAL---EEAGEEARGATAY 73
HAE+ A+ +G+ GAT Y
Sbjct: 54 EENGWAEYVNVPGVGTELRLRQDKSDEYSAWAKSNVIHAEMNAILFAANSGKPIEGATMY 113
Query: 74 VTLEPCSHY 82
T+ PC
Sbjct: 114 CTMAPCPEC 122
>gi|294499991|ref|YP_003563691.1| riboflavin biosynthesis protein RibD C-terminal domain-containing
protein [Bacillus megaterium QM B1551]
gi|294349928|gb|ADE70257.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacillus megaterium QM B1551]
Length = 172
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 2/125 (1%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
K +L + +D + + + + + + + +
Sbjct: 50 MGKATYDHVLKLISDFPYHDKKCYVFSRSSQGKDQYVEFVNESVASFLNNLNQDTKKIWL 109
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
GGA + F+ ++ VD I+ +++G GIP + G E N +G L
Sbjct: 110 VGGADILADFLTAKRVDEFIISIIPVLLGA-GIPLF-KRGIPEINLKLTHMKQYGQIAQL 167
Query: 353 EYIGK 357
Y +
Sbjct: 168 YYEKE 172
>gi|149408294|ref|YP_001294573.1| hypothetical protein ORF065 [Pseudomonas phage M6]
Length = 153
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 22/96 (22%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----------- 53
+D R++ A + W + V ++V+ + V G +
Sbjct: 8 WDRRYVGLAQHVAGWSK---DPSTKVGAVLVRPNNSVASTGFNGFPPGHDDSPELYADRG 64
Query: 54 -------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ AL G A G T Y + C +
Sbjct: 65 YKYQHVVHAEINALNFLGSPATGFTLYTSFPCCPNC 100
>gi|255524583|ref|ZP_05391537.1| bifunctional deaminase-reductase domain protein [Clostridium
carboxidivorans P7]
gi|296185767|ref|ZP_06854174.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
gi|255511736|gb|EET88022.1| bifunctional deaminase-reductase domain protein [Clostridium
carboxidivorans P7]
gi|296049595|gb|EFG89022.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans
P7]
Length = 189
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
+ + + + + + N ++ + + L + + + GGA++ +
Sbjct: 73 EKEIWKLVHSKEKYVFSRAQIDTDNQAIFINENIIEEVNKLKNKPGKDIWLYGGASLITT 132
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
FIN LVD L +++G G P + + N V F
Sbjct: 133 FINLGLVDEFRLSIHPVILG-EGKPLFI-DIKQRLNLNMVNTRTF 175
>gi|167769166|ref|ZP_02441219.1| hypothetical protein ANACOL_00489 [Anaerotruncus colihominis DSM
17241]
gi|167668806|gb|EDS12936.1| hypothetical protein ANACOL_00489 [Anaerotruncus colihominis DSM
17241]
Length = 167
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 40/130 (30%)
Query: 2 PVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53
++ D ++ A + T + +IV + ++ G G P
Sbjct: 4 KMTRRDKINYYLDIAETVAERG---TCLRRNFGAIIVNNDQIVSTGY---VGAPRGRENC 57
Query: 54 -------------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPP 87
HAE+ A+ A GAT Y+ S
Sbjct: 58 SDLGYCTRERLKVPRGERYELCRSVHAEMNAIIHAARSEMLGATLYLVGREVSDGSYVKN 117
Query: 88 CAQFIIECGI 97
+ +
Sbjct: 118 ACPCSMCTRL 127
>gi|152998999|ref|YP_001364680.1| deaminase-reductase domain-containing protein [Shewanella baltica
OS185]
gi|151363617|gb|ABS06617.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS185]
Length = 183
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 101 ISEQLKTRGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-GDLAQAIQ 157
Query: 338 FMCVRRDYFGSD-VCLEYIGKN 358
M + + + V Y +
Sbjct: 158 LMPIHTQQYDNGYVQTRYRVID 179
>gi|116621717|ref|YP_823873.1| CMP/dCMP deaminase, zinc-binding [Candidatus Solibacter usitatus
Ellin6076]
gi|116224879|gb|ABJ83588.1| CMP/dCMP deaminase, zinc-binding [Candidatus Solibacter usitatus
Ellin6076]
Length = 133
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 23/124 (18%)
Query: 27 TNPSVACLIV-KDGIVIGRGVTAYGGC------------------PHAEVQALEE---AG 64
N + C+IV + + G ++ HAE A+ AG
Sbjct: 8 PNTQIGCVIVGPNHEIRSTGYNSFPRGIRDDVPERLVRPTKYLWIEHAERNAICNAARAG 67
Query: 65 EEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
G T YV + PC R+ + R+ D G + G
Sbjct: 68 TATEGCTIYVDIMPCMDCARAVVQAGIVAVVISAERMTQYSSDYYNEHFGMVEVLFGEAG 127
Query: 124 IIVD 127
+ V
Sbjct: 128 VTVR 131
>gi|332359943|gb|EGJ37757.1| dihydrofolate reductase [Streptococcus sanguinis SK1056]
Length = 173
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L D +I+ + +++G+ G+P +E + F
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFDHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFD 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|153815751|ref|ZP_01968419.1| hypothetical protein RUMTOR_01989 [Ruminococcus torques ATCC 27756]
gi|317501315|ref|ZP_07959518.1| dihydrofolate reductase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088348|ref|ZP_08337267.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae bacterium 3_1_46FAA]
gi|145846992|gb|EDK23910.1| hypothetical protein RUMTOR_01989 [Ruminococcus torques ATCC 27756]
gi|316897279|gb|EFV19347.1| dihydrofolate reductase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408592|gb|EGG88058.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae bacterium 3_1_46FAA]
Length = 176
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V ++ + +KK+ + I+ ++ +L+ L +
Sbjct: 53 WNTYHQIVTELSPEDWVYDDFTTYVVTHKQKKSSDKIHFVNKNPVELIKELRKENGNGIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + + + ++D + ++G G E+ E ++ + +
Sbjct: 113 ICGGANLIQQLVRADIIDCYYITVIPTILGSGIR--LFEKADHEIKLRLLKTQSYNGMMD 170
Query: 352 LEYIGK 357
L Y +
Sbjct: 171 LIYAKR 176
>gi|312378080|gb|EFR24748.1| hypothetical protein AND_10447 [Anopheles darlingi]
Length = 186
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 17/126 (13%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-----DGIVIGRGVTA----YGGCPHAEVQAL 60
FM AL+ +R L V C+ V DG++I RG H E +
Sbjct: 4 FMEDALQQARLANDL--KEVPVGCVFVYGPNEGDGVIIARGCNLVNETKNATRHVEFICI 61
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
++A E AR EP + + + + VR G +
Sbjct: 62 DQALEYARAH----GFEPP--ESIFTSISVVVTVEPCIMCAAALLNLGVREIVYGCRNDR 115
Query: 121 QKGIIV 126
G V
Sbjct: 116 FGGSTV 121
>gi|218663750|ref|ZP_03519680.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
IE4771]
Length = 162
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 12/130 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG- 294
+ E D K ++ +L+ + + L EG
Sbjct: 37 MRYWDDDHHEWNADERDFAAAWRNQPKWVVSCSLKSVGPNARLVEGDLESAIRKLKAEGD 96
Query: 295 ------GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
G +A S + L+D ++Y +V+G G P V D
Sbjct: 97 GEIEVAGPDLARSLTDLGLIDEYVIYLHPVVLGH-GKPYFAGPR---PPLRLVANDRIDK 152
Query: 349 D-VCLEYIGK 357
+ + L Y+
Sbjct: 153 NVIRLVYVPD 162
>gi|52842205|ref|YP_096004.1| dihydrofolate reductase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629316|gb|AAU28057.1| dihydrofolate reductase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 181
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ + +II + +L + L G+ + ++GG + F+ + L+D I +
Sbjct: 81 KPIQIPEHLRHIISVSNQSPIELASELAHYGIQHVYLDGGITI-QRFLQNNLIDEITITM 139
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
++IG G P + + + G V ++Y
Sbjct: 140 IPVLIGS-GRPLF-GFLENDIKLKHLSTTSYPGGFVQIKY 177
>gi|183597629|ref|ZP_02959122.1| hypothetical protein PROSTU_00918 [Providencia stuartii ATCC
25827]
gi|188022897|gb|EDU60937.1| hypothetical protein PROSTU_00918 [Providencia stuartii ATCC
25827]
Length = 157
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 28 NPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
N ++VKD V+ G T HAE+ + + T Y + EP
Sbjct: 27 NEPFGAVLVKDNQVVMTGENHIHTESDPTYHAELGLIRQYCSEHKIMNLSEYTLYTSCEP 86
Query: 79 CSHYG 83
C
Sbjct: 87 CCMCS 91
>gi|118466407|ref|YP_882236.1| hypothetical protein MAV_3050 [Mycobacterium avium 104]
gi|118167694|gb|ABK68591.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104]
Length = 236
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-----IGEGGIPSPLEEGYLEKNF 338
G+ +L EGG + + + + + + + + +G P+
Sbjct: 162 EAGMHRILCEGGPTLLDELVEADALTELCVTLAPKLAASQPLGYRVHPA---RLTAPVGL 218
Query: 339 MCVRRDYFGSDVCLEYIG 356
+ L Y
Sbjct: 219 HLAHALVCDDYLFLRYRR 236
>gi|41407523|ref|NP_960359.1| hypothetical protein MAP1425c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395876|gb|AAS03742.1| hypothetical protein MAP_1425c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 227
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-----IGEGGIPSPLEEGYLEKNF 338
G+ +L EGG + + + + + + + + +G P+
Sbjct: 153 EAGMHRILCEGGPTLLDELVEADALTELCVTLAPKLAASQPLGYRVHPA---RLTAPVGL 209
Query: 339 MCVRRDYFGSDVCLEYIG 356
+ L Y
Sbjct: 210 HLAHALVCDDYLFLRYRR 227
>gi|227504965|ref|ZP_03935014.1| bifunctional deaminase-reductase domain protein [Corynebacterium
striatum ATCC 6940]
gi|227198474|gb|EEI78522.1| bifunctional deaminase-reductase domain protein [Corynebacterium
striatum ATCC 6940]
Length = 225
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFM 339
+G T ++ EGG V +FI + LVD + L + P EE
Sbjct: 142 HAQGWTRIVCEGGPGVYSAFIAAGLVDKLYLTLDPHLTSSVAQPLVYARDEETAQAPALS 201
Query: 340 CVRRDYFGSD----VCLEY 354
+ +D V L Y
Sbjct: 202 L-ELENVAADADGTVFLRY 219
>gi|296117773|ref|ZP_06836357.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295969504|gb|EFG82745.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 251
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 15/203 (7%)
Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
S + LR ++D I+VG GTV +D +P+ ++ +
Sbjct: 44 TLFGNSQAMGNDADTALFLGLRERADVIVVGSGTVSIEDYGGAQPTKERPTPAPIAVVTN 103
Query: 226 PHFKLSLDSKIIKTALLAPVI----IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ + VI + + A ++ + I +++
Sbjct: 104 SFNVDPQSKFVTEAITPPFVIANDKSMNSPEYAEKREALKQAGVEFINSGTGSANEIVQA 163
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGY 333
L +G+ ++ EGG + FI VD + L + G + I +
Sbjct: 164 LSAKGLNKIVCEGGPGLFGLFIADHAVDQMYLTLDPKLTGNVERTLVSDKAISAIGGSSE 223
Query: 334 LEKNFMCVRRDYFGSD--VCLEY 354
+F + +D V L Y
Sbjct: 224 GTIDFTLEKV-AVDTDSTVFLRY 245
>gi|312877655|ref|ZP_07737611.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
6A]
gi|311795548|gb|EFR11921.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor lactoaceticus
6A]
Length = 175
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----G 64
M + ++ S + VA +VKDG +I + HAE+ A+ +A
Sbjct: 39 MKTLIEYASR-----SNDIPVAAAVVKDGRIISIKRNDSKKAIYHAEILAIIDATSKLST 93
Query: 65 EEARGATAYVTLEPCSHY 82
++ R +VT EPC
Sbjct: 94 KDLRSCEMFVTKEPCPMC 111
>gi|318077697|ref|ZP_07985029.1| hypothetical protein SSA3_13503 [Streptomyces sp. SA3_actF]
Length = 71
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 2/67 (2%)
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--V 350
EGG + I + VD + L S + L D +
Sbjct: 2 EGGPQLLGRLIAADTVDELCLTVSPFLTAGDASRIAHAPQALTTPARLRPASILAEDGFL 61
Query: 351 CLEYIGK 357
Y+
Sbjct: 62 FTRYVRD 68
>gi|328957258|ref|YP_004374644.1| enzyme associated to DNA transport (competence) [Carnobacterium sp.
17-4]
gi|328673582|gb|AEB29628.1| enzyme associated to DNA transport (competence) [Carnobacterium sp.
17-4]
Length = 172
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 28/110 (25%)
Query: 1 MPVSS---FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP--- 53
M ++ +D FMS +L + T +V IV++ +I G + G
Sbjct: 1 MNMTERIPWDQYFMSQSLL---LSLRSTCARLTVGATIVREKRIIAGGYNGSVSGDAHCI 57
Query: 54 ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G + GA YVT PC +
Sbjct: 58 DDGCYIVDGHCLRTIHAEMNAILQCAKFGAQTEGAEIYVTHFPCLQCTKM 107
>gi|154274982|ref|XP_001538342.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414782|gb|EDN10144.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 271
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 14/69 (20%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI------------VKDGIVIGRGVT-AYGGCP 53
++ A L ++ TN V ++ + ++ G T G
Sbjct: 21 HLHYLRACLSLAQQSPPK-PTNFRVGAILLSRTPLSPDSPRTYNDTILSTGYTLELPGNT 79
Query: 54 HAEVQALEE 62
HAE AL +
Sbjct: 80 HAEQCALAK 88
>gi|284031454|ref|YP_003381385.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
17836]
gi|283810747|gb|ADB32586.1| CMP/dCMP deaminase zinc-binding protein [Kribbella flavida DSM
17836]
Length = 143
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHA 55
M ++ D F+ A+ + S NP L+ DG V+ T H
Sbjct: 1 MTTTA-DEGFLRRAIELA--ATADKSGNPPFGSLLAGPDGTVLAEDHNTSVTDNDITAHP 57
Query: 56 EV-----QALEEAGEEARGATAYVTLEPCSHYG 83
E+ A + A G T Y + +PC
Sbjct: 58 ELKLARWAAANLTPDVAAGTTMYTSCQPCRMCS 90
>gi|126729047|ref|ZP_01744861.1| deoxycytidylate deaminase [Sagittula stellata E-37]
gi|126710037|gb|EBA09089.1| deoxycytidylate deaminase [Sagittula stellata E-37]
Length = 152
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 29/100 (29%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D F+ A+ + + V C++V + ++G G G P
Sbjct: 11 WDRFFLDMAVHVATASR---DPSTKVGCILVDEQRRLVGMGY---NGFPRGVVDLPERYE 64
Query: 54 ----------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HAE A L+ G+TAY+T PCS+
Sbjct: 65 DRPTKYLMVQHAEANAVLQSPSNSLAGSTAYLTAPPCSNC 104
>gi|153812522|ref|ZP_01965190.1| hypothetical protein RUMOBE_02921 [Ruminococcus obeum ATCC 29174]
gi|149831447|gb|EDM86535.1| hypothetical protein RUMOBE_02921 [Ruminococcus obeum ATCC 29174]
Length = 146
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 27/96 (28%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-------------YGGCP--- 53
M A+ N V IV D ++ G G P
Sbjct: 1 MGVAMLSGMRSK---DPNSQVGACIVSNDNKILSMGYNGFPKGCSDDEFPWAREGDPLDT 57
Query: 54 ------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
H+E+ A+ G GA YV+L PC+
Sbjct: 58 KYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNEC 93
>gi|326787188|gb|AEA07651.1| putative dihydrofolate reductase [uncultured bacterium]
Length = 207
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
D+ LL L G V+GGA + SFI L+D I + + I++G G+P
Sbjct: 122 MFSGDIPALLGRLTSDGYKHAYVDGGATIT-SFIQFGLLDEICVTQVPILLG-DGLPLF- 178
Query: 330 EEGYLEKNFMCVRRDYFGSD 349
+ + F +D
Sbjct: 179 GKIGRQIKLENAEATVFSND 198
>gi|311993486|ref|YP_004010351.1| Cd dCMP deaminase [Acinetobacter phage Acj9]
gi|295917443|gb|ADG60114.1| Cd dCMP deaminase [Acinetobacter phage Acj9]
Length = 181
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 59/184 (32%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG----------------- 51
F+ A S+ ++ V +I K+G +I G + G
Sbjct: 6 FLQIAYLVSQESNCVSWK---VGAVIAKNGRIISTGYNGSPAGGVNCCDHSKEQGWLGFI 62
Query: 52 ---CP------------------------HAEVQALEEAGEE---ARGATAYVTLEPCSH 81
P HAE+ A+ A + GAT YVTL PC+
Sbjct: 63 NMHTPQHQRTYLKPECRSDHSAWSSANEIHAELNAILYAAKNGLAIDGATMYVTLSPCAD 122
Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141
++ + + + R S + L GI V ++ +S+ + +
Sbjct: 123 CAKAIANSGIRQ--------LVYSEKYDRNSPGWEKILKDAGIEVFQIPKSQLQTLDWTH 174
Query: 142 LTRQ 145
+
Sbjct: 175 IVNY 178
>gi|298250631|ref|ZP_06974435.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297548635|gb|EFH82502.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 169
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
++ L+ L G+G T+ L+ GGA + ++F+ LVD +I + ++ G+G Y
Sbjct: 84 PQEALSYLQGKGHTTALLSGGADLHNAFLGQGLVDEVIFNVAPVMEGKGLNLLLDTGHYQ 143
Query: 335 EKNFMCVRRDYFGSDVC-LEY 354
++ + G V L Y
Sbjct: 144 YQDVQLLDCKPLGGGVIQLRY 164
>gi|322386164|ref|ZP_08059797.1| dihydrofolate reductase [Streptococcus cristatus ATCC 51100]
gi|321269744|gb|EFX52671.1| dihydrofolate reductase [Streptococcus cristatus ATCC 51100]
Length = 173
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ V GG ++ +++ L + +I+ + +++G+ G+P +E + FG
Sbjct: 103 KNVFVIGGNSLVGPLLDADLFNHLIIQIAPLILGK-GVPLFTQEEGQRF-YQLDSLRQFG 160
Query: 348 SDVCLEYIGKN 358
L + K+
Sbjct: 161 PFAELVFSRKS 171
>gi|45190643|ref|NP_984897.1| AER037Cp [Ashbya gossypii ATCC 10895]
gi|54036278|sp|Q757H6|RIB7_ASHGO RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|44983622|gb|AAS52721.1| AER037Cp [Ashbya gossypii ATCC 10895]
Length = 246
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 14/201 (6%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
+TL A S D I I+ +K H LR IL+G GT LADDP L C
Sbjct: 29 PFVTLTYAQSLDARIAKQKGERTVISHEETKTMTHYLRYHHSGILIGSGTALADDPGLNC 88
Query: 210 RL-------NGLQEHSPMRIILDPHFKL-----SLDSKIIKTALLAPVIIVTENDDPVLA 257
R + ++ SP IILD + ++ AP+++ +
Sbjct: 89 RWTPAADGADCTEQSSPRPIILDVRGRWRYRGSKIEYLHNLGKGKAPIVVTGGEPEVREL 148
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSIILYRS 316
+ + + + S++VEGGA V + + +VDS+++
Sbjct: 149 GVSYLQLGVDEGGRLNWGELFERLYSEHHLESVMVEGGAEVLNQLLLRPDIVDSLVITIG 208
Query: 317 QIVIGEGGIP-SPLEEGYLEK 336
+G G+ SP EE LE
Sbjct: 209 SKFLGSLGVAVSPAEEVNLEH 229
>gi|290956214|ref|YP_003487396.1| hypothetical protein SCAB_16991 [Streptomyces scabiei 87.22]
gi|260645740|emb|CBG68831.1| putative secreted protein [Streptomyces scabiei 87.22]
Length = 224
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
LLV G +A + + L D ++L +V+G G + ++ V G
Sbjct: 154 DLLVLGSPTLARTLLAEGLADELVLIVMPVVLGGG--KTIFPGDGAKRTLELVSTTTNG 210
>gi|309778917|ref|ZP_07673687.1| riboflavin biosynthesis protein RibD C- domain protein [Ralstonia
sp. 5_7_47FAA]
gi|308922264|gb|EFP67891.1| riboflavin biosynthesis protein RibD C- domain protein [Ralstonia
sp. 5_7_47FAA]
Length = 220
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 33/145 (22%), Gaps = 11/145 (7%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + R G K + V A
Sbjct: 62 DFAARSFRNVGAWILGRNMFGPIRGDWPDDTWKGWWGDNPPYHVPVFVLTHYARAPIEMA 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + L G + + GG ++ L+D + + S +++G
Sbjct: 122 GGTTFHFITGGFREALERAREAAGGKDVRIGGGPGTIRQYLREGLIDELHIAISPVLLGR 181
Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFG 347
G E F + G
Sbjct: 182 G-----------EPLFEGIDLRALG 195
>gi|283457044|ref|YP_003361608.1| tRNA-specific adenosine deaminase [Bifidobacterium dentium Bd1]
gi|283103678|gb|ADB10784.1| MesJ tRNA-specific adenosine deaminase [Bifidobacterium dentium
Bd1]
Length = 145
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 30 SVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G VIGRG HAEV+A+ EA T VTLEPC
Sbjct: 18 PVGAVVLDAAGQVIGRGRNLREADRDPLAHAEVKAMTEAAHALGTWNLADCTLIVTLEPC 77
Query: 80 SHYGRSP 86
+
Sbjct: 78 PMCAGAC 84
>gi|145223166|ref|YP_001133844.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium gilvum PYR-GCK]
gi|145215652|gb|ABP45056.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium gilvum
PYR-GCK]
Length = 146
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+ + A+ +R + + + DG ++G G HAE A A
Sbjct: 5 QMLDVAVEEARKGLAEGGI--PIGAALFAADGTLLGSGHNRRVQLDDPSLHAETDAFRNA 62
Query: 64 GEE--ARGATAYVTLEPCSHYG 83
G + R T TL PC +
Sbjct: 63 GRQRGYRSTTMVTTLSPCWYCS 84
>gi|54026129|ref|YP_120371.1| hypothetical protein nfa41580 [Nocardia farcinica IFM 10152]
gi|54017637|dbj|BAD59007.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 184
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 42/165 (25%), Gaps = 4/165 (2%)
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
LA+ ++ L + F+ + + +
Sbjct: 22 WFTVGNDALAEQADINAELMAHTAACDAVLFGRRTFEDMRGYWPRQDDDRSGITDDLNTI 81
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ R L ++ + G ++ G + H I + LVD
Sbjct: 82 RKYVVSRTMTDPAWHNSVVLRGLDEVAAVKREPG-KDIVCTGSIELVHQLIAAGLVDEYR 140
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
L+ +V+G G EG F V L Y
Sbjct: 141 LFVYPVVLGRGAR--LFGEGARLPRLRLAESKRFRSGVVLLRYRP 183
>gi|271962402|ref|YP_003336598.1| hypothetical protein Sros_0841 [Streptosporangium roseum DSM 43021]
gi|270505577|gb|ACZ83855.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 189
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LL+ GG+A+A ++D ++ +++G G ++ V F S
Sbjct: 119 LLLFGGSALAAHLTEHGVIDEYQIFVHPVILGGG--KPVFQKQSHRAGLELVESRTFDSQ 176
Query: 350 -VCLEYIG 356
V L +
Sbjct: 177 VVLLRHRR 184
>gi|125572137|gb|EAZ13652.1| hypothetical protein OsJ_03569 [Oryza sativa Japonica Group]
Length = 157
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP 53
S+D FM+ A ++ N V +V ++GI++G G G P
Sbjct: 89 SWDDYFMAIAFLSAKRSK---DPNRQVGACLVSQEGIILGIGY---NGFP 132
>gi|146306335|ref|YP_001186800.1| deaminase-reductase domain-containing protein [Pseudomonas
mendocina ymp]
gi|145574536|gb|ABP84068.1| bifunctional deaminase-reductase domain protein [Pseudomonas
mendocina ymp]
Length = 192
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ + L G + + GG+ +A S + L+D +++ ++G G PL
Sbjct: 92 HCTPAQAVDALREAGFQRIWLVGGSLLAGSCYTAGLIDEVVINLVPHLLGAG---IPLLA 148
Query: 332 GYLEKNFMCVRRDYF-GSDVCLEYIGKNLCLQ 362
+E++ + F V L Y K Q
Sbjct: 149 TGMERSLTLSEQRPFTSGMVQLHYQVKKQASQ 180
>gi|55379804|ref|YP_137654.1| cytosine deaminase [Haloarcula marismortui ATCC 43049]
gi|55232529|gb|AAV47948.1| cytosine deaminase [Haloarcula marismortui ATCC 43049]
Length = 154
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 1 MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
MP+S FD + A +R V + ++V+D V+ T
Sbjct: 1 MPMSEFDEFDHETHIQRAFELARTAVDR--GDRPFGSVLVRDNEVVMEASNRVLTESDVR 58
Query: 53 PHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
H E+Q A +E Y + EPC
Sbjct: 59 RHPELQLAHRAMQEFDPDERAETVMYTSTEPCPMC 93
>gi|24216237|ref|NP_713718.1| hypothetical protein LA_3538 [Leptospira interrogans serovar Lai
str. 56601]
gi|24197497|gb|AAN50736.1| hypothetical protein LA_3538 [Leptospira interrogans serovar Lai
str. 56601]
Length = 182
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 56/165 (33%), Gaps = 6/165 (3%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
T+ + + + ++L L + TA++ II T+ ++
Sbjct: 19 PNSTIDWHVVDEEFNKYTIDFLDQVDVLLFGRITYELMANYWPTAIVDNPIIATKMNEIT 78
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS---LLVEGGAAVAHSFINSRLVDSII 312
+ + + + + + G +++ + I +L+D +
Sbjct: 79 KIVFSKTLANVKWKNSILVYNNVKKEVAKLKKQQGKDIAIFGSSSLVATLIEQKLIDEVR 138
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
++ + +V+GEG + + + ++ F +V L Y
Sbjct: 139 IFINPVVLGEG--KTLFQGIQNRISLKLIQTKTFQSGNVLLYYQP 181
>gi|269119566|ref|YP_003307743.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis
ATCC 33386]
gi|268613444|gb|ACZ07812.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis
ATCC 33386]
Length = 160
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR-GV---TAYGGCPHAEVQALE 61
++ A+ S+ S N ++V K+G +I G TA HAE E
Sbjct: 6 HEFYLERAIEVSKEARE--SGNTPFGAILVDKEGNIIMEQGNIEITAKKCTGHAEASLAE 63
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
A E T Y T EPC
Sbjct: 64 RASHEYSKEFLWDCTLYTTAEPCCMC 89
>gi|93279969|pdb|2GD9|A Chain A, Crystal Structure Of A Putative Dihydrofolate Reductase
(Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
Resolution
gi|93279970|pdb|2GD9|B Chain B, Crystal Structure Of A Putative Dihydrofolate Reductase
(Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
Resolution
Length = 189
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K + + + + + + N ++ + + L + + G
Sbjct: 67 KNEDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLYG 126
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GA++ +FIN LVD L +V+G G P + + N V F
Sbjct: 127 GASLITTFINLGLVDEFRLSIHPVVLG-EGKPLFI-DVKQRINLKXVNTRTF 176
>gi|302386818|ref|YP_003822640.1| bifunctional deaminase-reductase domain protein [Clostridium
saccharolyticum WM1]
gi|302197446|gb|ADL05017.1| bifunctional deaminase-reductase domain protein [Clostridium
saccharolyticum WM1]
Length = 351
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
L+P + + + + I+ L+ LL++L R ++ + GGA +
Sbjct: 236 MELSPEVWPYSGKEAYVLTHKDIVDRPGIHFTREPLEHLLSVLKKREGKAIWICGGAQLV 295
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +N L+D L +++G G E+ + V + + Y +
Sbjct: 296 NQLMNKELIDEYHLTVMPVLLGGGIR--LFEKTGKQVLLKLVSIETENGVIDCIYRKR 351
>gi|282863353|ref|ZP_06272412.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
ACTE]
gi|282561688|gb|EFB67231.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
ACTE]
Length = 188
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 11/163 (6%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ + QE + + S T P E +
Sbjct: 25 WSGPPSDELFQWWLDQEQANGLSLYGRKL-WETMSSYWPTGDQQPDATPAEIEFARNWRD 83
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSII 312
K + + +L+T +T L E GGA +A + + + L+D +
Sbjct: 84 TPKVVFSSTIDEVDWNTRLVTGDAIAEITRLKAEDGGPMNIGGATLAGAAMRAGLIDEYV 143
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ +++G G P N V F G V Y
Sbjct: 144 IAAHPVLVGS-GTPFFTALDSW-VNLNLVETRTFPGGVVLTRY 184
>gi|229100506|ref|ZP_04231361.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
Rock3-29]
gi|228682888|gb|EEL36911.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
Rock3-29]
Length = 183
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ +G + + GG +A S I +L+D ++L + I++GEG S N
Sbjct: 103 FIKNFKQQGKGKIWLCGGGELAGSLIKHKLIDQLVLKVNPIIVGEG--ISLFGSVKPRLN 160
Query: 338 FMCVRRDYF 346
V +
Sbjct: 161 LKLVDMKQY 169
>gi|212635213|ref|YP_002311738.1| dihydrofolate reductase [Shewanella piezotolerans WP3]
gi|212556697|gb|ACJ29151.1| Dihydrofolate reductase, putative [Shewanella piezotolerans WP3]
Length = 186
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+L L+ L G ++GGA + SF+N +L++ II+ R+ +++GEG +
Sbjct: 100 MYSGELTALIAKLESEGHQHAYIDGGATI-QSFLNLKLINEIIITRAPVILGEG--IALF 156
Query: 330 EEGYLEKNFMCVRRDYFGSD 349
+ + F +D
Sbjct: 157 GKTATDIKLAQASAIAFAND 176
>gi|121715970|ref|XP_001275594.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Aspergillus clavatus NRRL 1]
gi|119403751|gb|EAW14168.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein
[Aspergillus clavatus NRRL 1]
Length = 217
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVT-AYG 50
M S ++ L + TN V +++ KD V+ G T
Sbjct: 1 MTTSP-HFDYLRQCLSLAERSPPR-PTNFRVGAMLLSRRDGDIECKDDCVLSTGYTMELA 58
Query: 51 GCPHAEVQALEE----------------AGEEARGATAYVTLEPC 79
G HAE L E R YVT+EPC
Sbjct: 59 GNTHAEQCCLSNFAAVHSVPEDRVAEVLPAEPGRKLVMYVTMEPC 103
>gi|307298994|ref|ZP_07578796.1| dihydrofolate reductase region [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915419|gb|EFN45804.1| dihydrofolate reductase region [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 166
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + K+LL L +G + + GGA F + LV+ + +
Sbjct: 69 NPDYYRPSENLIFTSSTPKELLEDLEKKGHDEVCLIGGAETFDHFADLGLVNELHITFEP 128
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
I+ GI E + + G + Y K
Sbjct: 129 II--RTGIAGLGETMERDLDLSLKEFRKLGEAILTVYEVK 166
>gi|161485975|ref|NP_738399.2| hypothetical protein CE1789 [Corynebacterium efficiens YS-314]
gi|259507401|ref|ZP_05750301.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
gi|259165026|gb|EEW49580.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314]
Length = 235
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ L S+ A AP+I+ D P + I+ + ++
Sbjct: 99 IAVISSSLDLDPGSRFFTEAAAAPIIVTDNTD-PSRLAGLQAAGARILQVGTLGVGLVVD 157
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L G + EGGA+V I++ ++D + G P+
Sbjct: 158 KLRQEGFARISCEGGASVYAQMIDAGVIDVWHHTIDPALSGTVEKPAVRGGRNQPVALTL 217
Query: 341 VRRDYFGSD--VCLEYI 355
+ D + L Y
Sbjct: 218 -EHMHADPDSTLFLRYR 233
>gi|23493630|dbj|BAC18599.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 292
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
++ L S+ A AP+I+ D P + I+ + ++
Sbjct: 156 IAVISSSLDLDPGSRFFTEAAAAPIIVTDNTD-PSRLAGLQAAGARILQVGTLGVGLVVD 214
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
L G + EGGA+V I++ ++D + G P+
Sbjct: 215 KLRQEGFARISCEGGASVYAQMIDAGVIDVWHHTIDPALSGTVEKPAVRGGRNQPVALTL 274
Query: 341 VRRDYFGSD--VCLEYI 355
+ D + L Y
Sbjct: 275 -EHMHADPDSTLFLRYR 290
>gi|255280709|ref|ZP_05345264.1| RibD domain protein [Bryantella formatexigens DSM 14469]
gi|255268646|gb|EET61851.1| RibD domain protein [Bryantella formatexigens DSM 14469]
Length = 132
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 8/125 (6%)
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ P I + + + G+ +L++ GG +
Sbjct: 7 MNRPYIFCYMMTSLDGKIMGKYMETPEGSAAGDVFYNISFGKKLFGIETLMLGGGGVLNW 66
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKN------FMCVRRDYFGSDVCLE 353
SFI + + D + + + G P+ +G G V L
Sbjct: 67 SFIQAGMCDEVSVVIAAAADGSTNTPALFSAKGGFAPEMPVCFSLQSAEVRN-GGSVWLR 125
Query: 354 YIGKN 358
Y+ K
Sbjct: 126 YLVKE 130
>gi|225018186|ref|ZP_03707378.1| hypothetical protein CLOSTMETH_02123 [Clostridium methylpentosum
DSM 5476]
gi|224948983|gb|EEG30192.1| hypothetical protein CLOSTMETH_02123 [Clostridium methylpentosum
DSM 5476]
Length = 208
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 2/116 (1%)
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+P V+ + + + D ++ L + + V GGA +
Sbjct: 95 SPNNWPYRKKKSVVFTHRKMHSTEFVEFVSGDAADFVSQLRKQQGKDIWVCGGAELVSQL 154
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
I + +D + +++G GIP + L + GS + Y +
Sbjct: 155 IQADAIDVYDITILPVLLGS-GIPLFRQGNPLT-ELRLEQLKACGSSIRAIYTRRR 208
>gi|160873589|ref|YP_001552905.1| deaminase-reductase domain-containing protein [Shewanella baltica
OS195]
gi|160859111|gb|ABX47645.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS195]
gi|315265817|gb|ADT92670.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS678]
Length = 183
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 101 ISEQLKNRGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-GDLAQALQ 157
Query: 338 FMCVRRDYFGS 348
M + + +
Sbjct: 158 LMPIHTQQYDN 168
>gi|320531168|ref|ZP_08032158.1| guanine deaminase family protein [Actinomyces sp. oral taxon 171
str. F0337]
gi|320136617|gb|EFW28575.1| guanine deaminase family protein [Actinomyces sp. oral taxon 171
str. F0337]
Length = 157
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTN--PSVACLIVKDGIVIGR-GVTA----YGGCPHA 55
+++ + M A+ + + P V +IV VI GV HA
Sbjct: 1 MTNHLEQIMRQAVV---RSITHVESGGLPFVG-VIVDGQQVISEFGVNRVQETGDPSAHA 56
Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHY 82
E+ A+ +A + RG T T EPC
Sbjct: 57 EITAIRDALTSSGRTDLRGTTILATGEPCGMC 88
>gi|326798291|ref|YP_004316110.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
gi|326549055|gb|ADZ77440.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
Length = 193
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
A K N + ++++ + G ++ G +A S + L+D L
Sbjct: 92 NEANWGKWENAKVVNGDAVEEIAKLKALPGKNMVIW-GSVTLAQSLMKCGLIDEYHLQLC 150
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGKNL 359
+ +G G P + Y+ N + + + + L+Y ++L
Sbjct: 151 PVALGGGRPLFPTGDKYI--NLELIDLKKYDTGIVLLKYKPRSL 192
>gi|237722494|ref|ZP_04552975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448304|gb|EEO54095.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 150
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + ++ + + L + + +L+
Sbjct: 26 ANTYTYLFEHWGGWLYKSKRTFVVSHHDANVTPDCGVEFLIDAPLRKVHEMKSDNDMLLV 85
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
GG + + I + L+DS+ LY +++G+G N+ +++ L
Sbjct: 86 GGGKLLTTLIQAGLLDSLTLYTIPVMLGKG---ISFIGETFGSNWYLESSKIIDNNILL 141
>gi|154505762|ref|ZP_02042500.1| hypothetical protein RUMGNA_03302 [Ruminococcus gnavus ATCC
29149]
gi|153793780|gb|EDN76200.1| hypothetical protein RUMGNA_03302 [Ruminococcus gnavus ATCC
29149]
Length = 159
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR-GV---TAYGGCPHAEVQALE 61
++ A+ S+ + N L+V K+G +I G T HAE
Sbjct: 5 HEFYLRRAIEISKEARE--AGNTPFGALLVNKEGEIIMEQGNIEITEKICTGHAEATLAA 62
Query: 62 EAGEEAR-----GATAYVTLEPCSHY 82
A E T Y T EPC+
Sbjct: 63 RASHEYSREFLWDCTLYTTAEPCAMC 88
>gi|23098113|ref|NP_691579.1| hypothetical protein OB0658 [Oceanobacillus iheyensis HTE831]
gi|22776338|dbj|BAC12614.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 158
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---HAEVQ 58
++ D +++ + ++ + T P ++V +G V+ G H E
Sbjct: 2 INDSDLKYLRRCIELAKAAL-ETGDEP-FGSVLVSANGDVLAEDYNHVSGGDHTQHPEF- 58
Query: 59 ALEE--AG----EEARGATAYVTLEPCSHY 82
AL + AG EE AT Y + E C
Sbjct: 59 ALAKWAAGNMTSEERGKATVYTSGEHCPMC 88
>gi|225557565|gb|EEH05851.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 289
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV------------KDGIVIGRGVT-AYGGCP 53
++ A L ++ TN V +++ + ++ G T G
Sbjct: 21 HLHYLRACLSLAQQSPPK-PTNFRVGAILLSRTLLSPGRPRMYNDTILSTGYTLELPGNT 79
Query: 54 HAEVQALEE 62
HAE AL +
Sbjct: 80 HAEQCALAK 88
>gi|258651398|ref|YP_003200554.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
44233]
gi|258554623|gb|ACV77565.1| CMP/dCMP deaminase zinc-binding [Nakamurella multipartita DSM
44233]
Length = 164
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAEVQ 58
+ D R + + + + ++V DG V+ G H E +
Sbjct: 1 MDETDLRHLRRCVELAEQALDSGDE--PFGSVLVTGDGTVLAEDHNRVAGGDRTRHPEFE 58
Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPP 87
A R AT Y + E C +
Sbjct: 59 LARWAAANLSPHERRAATVYTSGEHCPMCAAAHA 92
>gi|118389922|ref|XP_001028006.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Tetrahymena thermophila]
gi|89309776|gb|EAS07764.1| Cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Tetrahymena thermophila SB210]
Length = 354
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 40/112 (35%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
S+D FM A+ + SV +++ K+ ++ G G P
Sbjct: 203 SWDEYFMRLAVEVKKRSNCNKR---SVGAILISKEKRILSTGY---NGTPLRMKDCFYGG 256
Query: 54 --------------------HAEVQALEEAGEEARGA---TAYVTLEPCSHY 82
HAE L + G T Y TL PC
Sbjct: 257 CERCNQNTAQGQGLDQCWCIHAEENCLLDIGVRESKQFEPTMYTTLFPCRMC 308
>gi|295835890|ref|ZP_06822823.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
gi|295825757|gb|EFG64457.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
Length = 250
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
RG+ L EGG + + I + VD + L S +
Sbjct: 185 RGLRRQLAEGGPHLLGTLIAADAVDELCLTVSPFLAAGEA 224
>gi|116670608|ref|YP_831541.1| deaminase-reductase domain-containing protein [Arthrobacter sp.
FB24]
gi|116610717|gb|ABK03441.1| bifunctional deaminase-reductase domain protein [Arthrobacter sp.
FB24]
Length = 180
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 243 APVIIVTENDDPVLALAFRKKNINII---------YCDCRDLKKLLTILVGRGVTSLLVE 293
A ++ ++ P + + + + G ++ +
Sbjct: 57 AWLMEHEPDNWPYPDTPCWVFTHHEHSAPRGADVTFVRGDVQEFMDDFRADAGGKNVWLV 116
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
GG +A F ++ L+D II+ +V+G G P+ + + G + L
Sbjct: 117 GGGELAAQFADAGLLDEIIVSIIPVVLGAGKPVLPV-KTGPTRPLELEASSTMGRGIVEL 175
Query: 353 EYI 355
Y
Sbjct: 176 RYR 178
>gi|332671974|ref|YP_004454982.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
484]
gi|332341012|gb|AEE47595.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
484]
Length = 171
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 36/98 (36%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-------------IVIGRGVTAY---- 49
DA M AL +R V+ G V+ RG
Sbjct: 16 DAWAMGLALDEARRA--------------VQSGDVPVGAVVVGPSGEVVARGHNVREALD 61
Query: 50 GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV AL A + T VTLEPC
Sbjct: 62 DPTGHAEVVALRAAADRLGRWRLDDCTLVVTLEPCLMC 99
>gi|320007011|gb|ADW01861.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 214
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 1/141 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + D K V + + D +
Sbjct: 75 MGRNKFGPLRGPWENDDWKGWWGPNPPFHTPVFVLTHHPRPSVEMEGGTTFHFIDATPQE 134
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GG + F+ LVD + + IV+G G LEK
Sbjct: 135 VLRQAREAAGGLDVRIGGGPSTVREFLAEDLVDHLHVAVVPIVLGRGERLW-DGLEGLEK 193
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
F G + +
Sbjct: 194 RFRAESVTTPGGVTHMTFTRP 214
>gi|226305500|ref|YP_002765460.1| hypothetical protein RER_20130 [Rhodococcus erythropolis PR4]
gi|226184617|dbj|BAH32721.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 190
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LV G + H+ + + LVD + L +++G GG P E + + + S
Sbjct: 122 ILVAGSRTLVHALLLAGLVDELRLMVFPVILGSGGRVFP--ESADKIDLELKDDRRYESG 179
Query: 350 V-CLEYIG 356
V L Y
Sbjct: 180 VQVLTYHP 187
>gi|294643821|ref|ZP_06721616.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292640826|gb|EFF59049.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 103
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T +LV GG + S I + L+DS+ +Y +++G+G L +
Sbjct: 33 TDILVVGGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSEWKLSESRVLD 89
Query: 348 SD-VCLEYI 355
+ VC Y+
Sbjct: 90 NGVVCSTYL 98
>gi|288560542|ref|YP_003424028.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
gi|288543252|gb|ADC47136.1| CMP/dCMP deaminase [Methanobrevibacter ruminantium M1]
Length = 149
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 38/106 (35%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53
+S D +++ A S+ L +IV + +I G G P
Sbjct: 11 MSKTD-YYLAIAFAVSKRSTCLKRHY---GAVIVNNDEIISTGY---NGNPRGEENCCDR 63
Query: 54 ---------------------HAEVQALEEAGEE-ARGATAYVTLE 77
HAE A+ A GAT Y+ E
Sbjct: 64 GSCKRMDVPSNSGDYSDCFSVHAEQNAMISASRNEMIGATIYLAGE 109
>gi|328848151|gb|EGF97399.1| hypothetical protein MELLADRAFT_79837 [Melampsora larici-populina
98AG31]
Length = 269
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 22/247 (8%)
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
H L + +R +TL A S D I + ++G S H++R +
Sbjct: 19 YNPIISPEFHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTHMMRTR 78
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246
D ILVGIGT+L DDP+LT R E+ P I+LD + +D K+IK
Sbjct: 79 HDGILVGIGTLLNDDPQLTARNLSFTVPLENQPQPIVLDTRLRTPIDCKLIKNYRNQTGK 138
Query: 247 IVTENDDPVLALAFRKK-------------NINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + ++ N DL+K+ + G+ L++E
Sbjct: 139 QPWLICARSMISSQDRQSLEEAGARVIPITNGMNPSNQGLDLEKVFEVCKINGINRLMIE 198
Query: 294 GGAAVAHSFI----NSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGS 348
GG+++ S + + +++ +++ S ++GEG + + + L ++ GS
Sbjct: 199 GGSSIISSCLNYTGDHPILNILVVTVSPYMVGEGLTVKTSNIDSRLSL-LRHIQTKILGS 257
Query: 349 DVCLEYI 355
D Y
Sbjct: 258 DAVFAYT 264
>gi|328947621|ref|YP_004364958.1| bifunctional deaminase-reductase domain protein [Treponema
succinifaciens DSM 2489]
gi|328947681|ref|YP_004365018.1| bifunctional deaminase-reductase domain protein [Treponema
succinifaciens DSM 2489]
gi|328447945|gb|AEB13661.1| bifunctional deaminase-reductase domain protein [Treponema
succinifaciens DSM 2489]
gi|328448005|gb|AEB13721.1| bifunctional deaminase-reductase domain protein [Treponema
succinifaciens DSM 2489]
Length = 229
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L + L V+ G V F+ +L+D + + + ++IG + ++ +
Sbjct: 140 LYQLKNDFSCERLTVQSGGTVNSIFLREKLIDFVDIVLAPVLIGGKDTSTLIDGKSIMSE 199
Query: 338 --------FMCVRRDYFGSD-VCLEYIG 356
+ + + L Y
Sbjct: 200 KELASLGVLKLLECKTLSNSYIRLRYRV 227
>gi|254519007|ref|ZP_05131063.1| deaminase-reductase domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226912756|gb|EEH97957.1| deaminase-reductase domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 189
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
+ + + + + + N ++ + + L + + + GGA++
Sbjct: 72 NEKEIWELINSKEKYVFSRTQIATDNQAIFINENILEEVNKLKNKPGKDIWLYGGASLIT 131
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+FIN L+D L +++GEG + N V F
Sbjct: 132 TFINLGLIDEFRLSIHPVILGEG--KPLFTDVKQRLNLKMVNARTF 175
>gi|300784583|ref|YP_003764874.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
gi|299794097|gb|ADJ44472.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis
mediterranei U32]
Length = 246
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
RG+ + EGG + + + LVD + L + +++
Sbjct: 171 RGLRRVDCEGGPGLFARLVAADLVDQLCLTVAPLLV 206
>gi|255036731|ref|YP_003087352.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254949487|gb|ACT94187.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 175
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L+ L +G + V+GGA V + I L+D I+ I++G+G +G E+N
Sbjct: 97 LIEGLKQKGGKHIFVDGGAEVVNQLIRMDLIDEYIVSLIPILLGDGIR--LFHDGRPEQN 154
Query: 338 FMCVRRDYFGSDVC-LEYIGK 357
V F + L Y +
Sbjct: 155 LAFVSSKSFEKGLVQLHYKRR 175
>gi|323343044|ref|ZP_08083275.1| dihydrofolate reductase [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463108|gb|EFY08303.1| dihydrofolate reductase [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 176
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + K N + D+ +L + + + + G
Sbjct: 55 YKQVTEELSPDVYPYEDSFTYVVSSQDIKPRNNMALISEDVIGVLNEIKQQEGKDIWIVG 114
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G + + + + ++D + + I++G+ GIP +E + G V ++Y
Sbjct: 115 GGMLVSALVEASIIDEYWIAAAPILLGK-GIPLF-DESINSHQLNLIESYTKGQLVYMKY 172
Query: 355 IGK 357
+
Sbjct: 173 QKR 175
>gi|254577709|ref|XP_002494841.1| ZYRO0A10890p [Zygosaccharomyces rouxii]
gi|238937730|emb|CAR25908.1| ZYRO0A10890p [Zygosaccharomyces rouxii]
Length = 248
Score = 48.8 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVK--DGIVIGRGVTAYG----GC 52
M +++ R M ALR R+ + G T VAC+ V ++ G+ G
Sbjct: 1 MALANVHLRHMETALRLGRYALDHGET----PVACIFVHIPTDQIVAFGMNDTNRSLTGV 56
Query: 53 PHAEVQALEEAGEEAR---------GATAYVTLEPCSHY 82
HAE +E+ E YVT+EPC
Sbjct: 57 AHAEFMGIEQIREFVSPDELVPFFGDIALYVTVEPCIMC 95
>gi|284989444|ref|YP_003407998.1| cytosine deaminase [Geodermatophilus obscurus DSM 43160]
gi|284062689|gb|ADB73627.1| Cytosine deaminase [Geodermatophilus obscurus DSM 43160]
Length = 165
Score = 48.8 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEV 57
+ D + A+ +R + +V V+ G H E
Sbjct: 14 TLQERDRFLLGLAVEQARIGWEEGGV--PIGAALVDGDRVLAVGRNRRVQMASAIRHGET 71
Query: 58 QALEEAGEEA----RGATAYVTLEPCSHY 82
+E AG R + Y TL PC
Sbjct: 72 DCIERAGRLPASVYRRSVLYTTLSPCLMC 100
>gi|258543612|ref|YP_003189045.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01]
gi|256634690|dbj|BAI00666.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01]
gi|256637746|dbj|BAI03715.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-03]
gi|256640800|dbj|BAI06762.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-07]
gi|256643855|dbj|BAI09810.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-22]
gi|256646910|dbj|BAI12858.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-26]
gi|256649963|dbj|BAI15904.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-32]
gi|256652953|dbj|BAI18887.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656007|dbj|BAI21934.1| CMP/dCMP deaminase [Acetobacter pasteurianus IFO 3283-12]
Length = 151
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V +++ +G V+ + HAE+ + EA G++ T +V+LEPC
Sbjct: 24 PVGAVLLDSNGNVLAQAGNRVEELRDPSAHAEMLVMREAVQQRQGQKLADCTLFVSLEPC 83
Query: 80 SHY 82
Sbjct: 84 PMC 86
>gi|256395487|ref|YP_003117051.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256361713|gb|ACU75210.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 177
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 4/122 (3%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ T + + E V + + D + L +G L+V G
Sbjct: 58 MWGTPEGPYLERLHEMPKYVYSSTLTSADWANTTIVSGDAVAAVRELKEQGDGDLMVYGY 117
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
++ + + + LVD + + +V G G +PL N G+ V L Y
Sbjct: 118 GRLSQALLEAGLVDRLDFTVNPVVFGSG---TPLFRPGKRVNLRLDSVSRRGNGAVALSY 174
Query: 355 IG 356
+
Sbjct: 175 VP 176
>gi|325963129|ref|YP_004241035.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469216|gb|ADX72901.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
Length = 198
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 28/111 (25%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
D + V +
Sbjct: 58 YIMGRNMFAGPGPGPWDADWRGWWGVEPPYHAPVFVLTHHPRPPLQMAGGTTFHFVAEGI 117
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L + + GGAA A ++++ L+D + L+ + +V+G G
Sbjct: 118 EAALDQARNAANGKDVAIAGGAATARQYLSAGLIDELRLHIAPLVLGAGAR 168
>gi|295705361|ref|YP_003598436.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319]
gi|294803020|gb|ADF40086.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacillus megaterium DSM 319]
Length = 172
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
K +L +D + + + + + + + +
Sbjct: 50 MGKATYDHVLKLTSEFPYSDKKCYVFSRSAQGKDQYVEFINESVASFLNNLSQETKKIWL 109
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
GGA + F+ + VD I+ +++G GIP + G E N +G L
Sbjct: 110 VGGADILADFLTEKRVDEFIISIIPVLLGA-GIPLF-KRGIPEMNLKLTDIKQYGQIAQL 167
Query: 353 EYIGK 357
Y +
Sbjct: 168 YYEKE 172
>gi|153853920|ref|ZP_01995253.1| hypothetical protein DORLON_01244 [Dorea longicatena DSM 13814]
gi|149753302|gb|EDM63233.1| hypothetical protein DORLON_01244 [Dorea longicatena DSM 13814]
Length = 215
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
D+ + L + I ++ + GV +
Sbjct: 87 PDASDMDKPYLIITSEQVTKEYLAYLDGQHISWIACGKERIDLVRACEILASEFGVERMG 146
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGS 348
+ GG A+ F+++ L+D I + + +PS + ++ + F S
Sbjct: 147 IVGGPAINTGFLDAGLLDEISILMGAGIDARREMPSVFDGFAMDHPLAHLKLTNVQRFDS 206
Query: 349 D-VCLEY 354
D + + Y
Sbjct: 207 DAIWIRY 213
>gi|332652950|ref|ZP_08418695.1| riboflavin biosynthesis protein RibD C- domain protein
[Ruminococcaceae bacterium D16]
gi|332518096|gb|EGJ47699.1| riboflavin biosynthesis protein RibD C- domain protein
[Ruminococcaceae bacterium D16]
Length = 178
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L+P E + +K+++ I+ DL L+ ++
Sbjct: 55 WTTYHQLVTELSPDSWPYEGRPCYVVTHRQKEDLENIFFWNGDLTDLVDKQKESHEGNVW 114
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA+VA + +D + L V+G+G P E E V +++ V
Sbjct: 115 ICGGASVAGQLLKEGRIDKLWLSIIPTVLGKGMRLFP--EFPQELPLKLVGTEHWNGIVD 172
Query: 352 LEYIGK 357
L Y +
Sbjct: 173 LVYEKR 178
>gi|302342017|ref|YP_003806546.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301638630|gb|ADK83952.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 171
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 7 DARFMS--AALRFSRWHVGLTSTNPSVACLIVK-DGIVIG----RGVTAYGGCPHAEVQA 59
D R M+ L +G T + ++V G V+ R ++ HAE+
Sbjct: 13 DRRHMALCLRLARRAARLGET----PIGAVLVDAAGRVLAAHGNRAISHTDPTAHAEMLV 68
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L +A G+T YV+LEPC
Sbjct: 69 LRQAAAAMGNYRLVGSTLYVSLEPCPMC 96
>gi|187919113|ref|YP_001888144.1| bifunctional deaminase-reductase domain-containing protein
[Burkholderia phytofirmans PsJN]
gi|187717551|gb|ACD18774.1| bifunctional deaminase-reductase domain protein [Burkholderia
phytofirmans PsJN]
Length = 225
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 17/225 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
+I + S D G + V + +
Sbjct: 1 MNPYIVAHMMSSLDGRSLTDGWHLDYASDLYEDTAATFEADGWICGRVTMQEIAHGADYP 60
Query: 208 ---------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258
++ I +DP +++ S + + V+ DD + L
Sbjct: 61 KGLAKGAVPRTDHFVERKADQYAISIDPQGRVAWKSNTALKSHVIEVLTEQVADDYLAYL 120
Query: 259 AFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ DL K++ + GV L+VEGG+ V+ +F+N+ LVD + +
Sbjct: 121 QSIGVSYVFGGKTELDLGKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILP 180
Query: 318 IVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVCLEYIG 356
+V G PS E + V + G+ V L Y
Sbjct: 181 LVDGRSEHPSSFEVAMEKWQAPAYLKLTSVEQKEHGA-VWLRYTK 224
>gi|260223396|emb|CBA33920.1| Probable deoxycytidylate deaminase [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 185
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 41/150 (27%), Gaps = 40/150 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP----------- 53
+ + FM AL + N IV D + G G G P
Sbjct: 19 WHSMFMGVALLAAARSKDARKRN---GACIVGPDNKISGVGY---NGLPRGCDDHDEHYW 72
Query: 54 ----------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE A+ G+T Y T PC I
Sbjct: 73 QDDDSDPLNSRHSYIVHAEQNAILNCTSLPLHGSTIYATQYPC-----PRCVQSIIQVGI 127
Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
R V + RV+ + L+ G+ +
Sbjct: 128 KRVVYLDKKAHQERVNAASEKMLADAGVEI 157
>gi|158337961|ref|YP_001519137.1| riboflavin biosynthesis protein RibD domain-containing protein
[Acaryochloris marina MBIC11017]
gi|158308202|gb|ABW29819.1| riboflavin biosynthesis protein RibD C-terminus domain protein
[Acaryochloris marina MBIC11017]
Length = 180
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
I L LV G L ++GGA + F+ + L+D + + I++G GIP
Sbjct: 92 CITHSADPPLMLYNRLVQEGAQHLYIDGGATI-QRFLAAGLIDELTITVIPILLG-EGIP 149
Query: 327 SPLEEGYLEKNFMCVRRDYFG 347
E + +
Sbjct: 150 LF-GSLAKEIPLTHLSSYSYD 169
>gi|268589808|ref|ZP_06124029.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
gi|291314796|gb|EFE55249.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131]
Length = 157
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 28 NPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
N ++VKD V+ G T HAE+ + + T Y + EP
Sbjct: 27 NEPFGAVLVKDNQVVMTGENHIHTESDPTYHAELGLIRQYCSEHKIMNLSEYTLYTSCEP 86
Query: 79 CSHYG 83
C
Sbjct: 87 CCMCS 91
>gi|156977644|ref|YP_001448550.1| dihydrofolate reductase [Vibrio harveyi ATCC BAA-1116]
gi|156529238|gb|ABU74323.1| hypothetical protein VIBHAR_06432 [Vibrio harveyi ATCC BAA-1116]
Length = 75
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
+ +G L ++GG + +F+ L+ +++ R I++G G + +F
Sbjct: 1 MNAKGFNELYIDGGVTI-QNFLKEDLIGKMVITRFPILLGGGA--PLFGDLAQPLHFKVT 57
Query: 342 RRDYFGSD-VCLEYIGKN 358
+ + V YI +
Sbjct: 58 KSEVVLDTLVKTTYIREK 75
>gi|54026276|ref|YP_120518.1| hypothetical protein nfa43050 [Nocardia farcinica IFM 10152]
gi|54017784|dbj|BAD59154.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 204
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+++ GG + S + + LVD + L+ + +++G G +PL + +
Sbjct: 139 DVVLMGGGTLIGSALAAGLVDVLSLHLAPVLLGAG---TPLFTDGPPRTLRQRSVTPTST 195
Query: 349 DVCLEY 354
+ L Y
Sbjct: 196 AIHLRY 201
>gi|146291638|ref|YP_001182062.1| deaminase-reductase domain-containing protein [Shewanella
putrefaciens CN-32]
gi|145563328|gb|ABP74263.1| bifunctional deaminase-reductase domain protein [Shewanella
putrefaciens CN-32]
Length = 183
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 100 NISKQLRERGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-SDVPQAI 156
Query: 337 NFMCVRRDYFGSD-VCLEYIGKN 358
M + + + V Y +
Sbjct: 157 QLMPIHTQQYDNGYVQTRYRVID 179
>gi|148242060|ref|YP_001227217.1| putative cytosine deaminase [Synechococcus sp. RCC307]
gi|147850370|emb|CAK27864.1| Putative cytosine deaminase [Synechococcus sp. RCC307]
Length = 149
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 9/139 (6%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY--GGCP--HAEVQALEE 62
+ M A + + ++ + G V+ RG G P H E Q +
Sbjct: 7 QQLMDQARAEAELGWAEGGI--PIGAVLATESGEVVARGHNQRVQNGDPTSHGETQCIRN 64
Query: 63 AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
AG T TL PC + F R + + +G + L
Sbjct: 65 AGRRRDWHQLTLVTTLSPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEVDCLD 124
Query: 121 QKGIIVDRMMESEGKIFLH 139
G + + K L
Sbjct: 125 DSGCMALMERMLQHKPDLW 143
>gi|123304805|ref|XP_001291231.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121864983|gb|EAX78301.1| hypothetical protein TVAG_337330 [Trichomonas vaginalis G3]
Length = 150
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPL 329
+ + + L VEGG + S + +++VD + L S + +P
Sbjct: 61 WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSLLLSATADATNSVSLFEANPY 120
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
F + S+ + ++Y K
Sbjct: 121 MMNTDPVEFTPKSIEKINSNGIWIKYTPK 149
>gi|16081128|ref|NP_391956.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
gi|221312059|ref|ZP_03593906.1| hypothetical protein Bsubs1_22011 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316384|ref|ZP_03598189.1| hypothetical protein BsubsN3_21917 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321297|ref|ZP_03602591.1| hypothetical protein BsubsJ_21870 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325580|ref|ZP_03606874.1| hypothetical protein BsubsS_22026 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|586838|sp|P37508|YYAP_BACSU RecName: Full=Uncharacterized protein yyaP
gi|467361|dbj|BAA05207.1| unknown [Bacillus subtilis]
gi|2636623|emb|CAB16113.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
168]
Length = 188
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
K + + + + + + N ++ + + L + + G
Sbjct: 66 KNEDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLYG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GA++ +FIN LVD L +V+G G P + + N V F
Sbjct: 126 GASLITTFINLGLVDEFRLSIHPVVLG-EGKPLFI-DVKQRINLKMVNTRTF 175
>gi|113952793|ref|YP_730770.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. CC9311]
gi|113880144|gb|ABI45102.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. CC9311]
Length = 203
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG------VTAYGGCPHAEVQAL 60
+M + +R G P V+ +++ G IG G G HAE+ A+
Sbjct: 40 QAWMGILIERARR-FGERGEVP-VSAVVLDHHGRCIGHGINQRELHHDPLG--HAELMAV 95
Query: 61 EEAGE-----EARGATAYVTLEPCSHY 82
+A T VTLEPC
Sbjct: 96 RQACRLRGDWRLNDCTLLVTLEPCPMC 122
>gi|269955016|ref|YP_003324805.1| CMP/dCMP deaminase zinc-binding protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269303697|gb|ACZ29247.1| CMP/dCMP deaminase zinc-binding protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 190
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 38 DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
DG ++G G HAEV AL +A G T VTLEPC
Sbjct: 71 DGRLLGTGRNRREETGDPTAHAEVLALRQAALSRREWRLEGCTLVVTLEPCVMC 124
>gi|19551950|ref|NP_599952.1| hypothetical protein NCgl0691 [Corynebacterium glutamicum ATCC
13032]
Length = 188
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + + GG +A F ++ +D IIL + + + + G P+ + V G
Sbjct: 118 TDIWIVGGGDLAGQFFDAGALDRIILTMAPVFL-DEGQPA-MPRRIESNRLRTVNVREVG 175
Query: 348 S 348
Sbjct: 176 Q 176
>gi|62389610|ref|YP_225012.1| hypothetical protein cg0828 [Corynebacterium glutamicum ATCC 13032]
gi|21323487|dbj|BAB98114.1| Dihydrofolate reductase [Corynebacterium glutamicum ATCC 13032]
gi|41324945|emb|CAF19426.1| putative dihydrofolate reductase [Corynebacterium glutamicum ATCC
13032]
Length = 189
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + + GG +A F ++ +D IIL + + + + G P+ + V G
Sbjct: 119 TDIWIVGGGDLAGQFFDAGALDRIILTMAPVFL-DEGQPA-MPRRIESNRLRTVNVREVG 176
Query: 348 S 348
Sbjct: 177 Q 177
>gi|88857140|ref|ZP_01131783.1| hypothetical protein PTD2_01231 [Pseudoalteromonas tunicata D2]
gi|88820337|gb|EAR30149.1| hypothetical protein PTD2_01231 [Pseudoalteromonas tunicata D2]
Length = 186
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
D+ L+ L G ++GG + +FIN +L++ +I+ ++ I++G GIP
Sbjct: 100 MYSGDILALINKLASDGYQHAYIDGGKTIT-AFINQQLINEMIITKAPIILG-EGIPLF- 156
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEY 354
+ + F +D + ++Y
Sbjct: 157 GKIEKPIKLLEANATAFPNDFIQIKY 182
>gi|316979440|gb|EFV62236.1| putative deoxycytidylate deaminase [Trichinella spiralis]
Length = 165
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 31/110 (28%), Gaps = 35/110 (31%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP------ 53
M + ++ FM A S+ V I ++I G G P
Sbjct: 1 MTL-DTESFFMGIACLSSKRSK---DPVTQVGACIANSSDVIISTGY---NGMPVGCDDN 53
Query: 54 --------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHY 82
HAE+ A A G YVTL PC+
Sbjct: 54 VLPWGKSLPNPLETKHPFVCHAELNAFLNASTSELSGCRLYVTLFPCNMC 103
>gi|271970366|ref|YP_003344562.1| hypothetical protein Sros_9200 [Streptosporangium roseum DSM 43021]
gi|270513541|gb|ACZ91819.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 183
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L+ G + + I L+D + L+ +++GEG +G K + FG
Sbjct: 110 KDILIYGSGDLVNYLIKHDLIDELKLFLHPVIVGEG--KRLFSDGIDTKTWQLAGTHTFG 167
Query: 348 SD-VCLEYIG 356
S + L+Y
Sbjct: 168 SGAIVLDYRP 177
>gi|323304324|gb|EGA58097.1| Tad2p [Saccharomyces cerevisiae FostersB]
Length = 242
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ V G V+ G+ G HAE
Sbjct: 2 QHIKHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|331028070|ref|YP_004421784.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
gi|301341533|gb|ADK73417.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1]
Length = 154
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 29/103 (28%), Gaps = 30/103 (29%)
Query: 3 VSSFDARFMSAALRFSRWHVGLT-STNPSVACLIVK-DGIVIGRGVTAYGGCP------- 53
+D RFM A + V +V D G G P
Sbjct: 6 FQKWDKRFMRLACE----ARTWVKGPDLGVGACVVSPDNRGFSLGY---SGLPRGMKDTN 58
Query: 54 --------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ A G T Y T PCSH
Sbjct: 59 DRITETEFKDHHMVHAELNAILNASRSVVGWTLYATTHPCSHC 101
>gi|302388259|ref|YP_003824081.1| dihydrofolate reductase [Clostridium saccharolyticum WM1]
gi|302198887|gb|ADL06458.1| dihydrofolate reductase [Clostridium saccharolyticum WM1]
Length = 172
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + +++ ++D++I+ + +++G GIP ++ L K F +G
Sbjct: 103 KNIWIVGGNTIIAPLLDNDMIDNMIIQIAPVLLG-IGIPLFSQKEAL-KRFHLKEVKKYG 160
Query: 348 S 348
Sbjct: 161 Q 161
>gi|124023348|ref|YP_001017655.1| cytidine/deoxycytidylate deaminase [Prochlorococcus marinus str.
MIT 9303]
gi|123963634|gb|ABM78390.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9303]
Length = 163
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRW--HVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEE 62
+M L ++ +G V+ +++ DG IG G HAE+ AL +
Sbjct: 6 WMLRLLTRAKQLGGLGEV----PVSAVVLDADGRCIGHGSNQRHRGRDPLGHAELIALRQ 61
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A T VTLEPC
Sbjct: 62 AAWLRSDWRFNDCTLIVTLEPCPMC 86
>gi|108798568|ref|YP_638765.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
MCS]
gi|119867667|ref|YP_937619.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
KMS]
gi|108768987|gb|ABG07709.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
MCS]
gi|119693756|gb|ABL90829.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
KMS]
Length = 188
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 45/170 (26%), Gaps = 8/170 (4%)
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
I G + DP L S TA P
Sbjct: 15 YIADAQGDIDWSDPSEELHQYWNDFERETACAFYGRRLYELMSAYWPTADKTPDATPLIV 74
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFIN 304
D + K + +L VT L E GA +A +
Sbjct: 75 DFAHIWRDMPKVVFSRTLESVDWNSRLERGDPVEVVTRLKAETDGNLEVAGATLAAPIVQ 134
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
+ LVD + + + +G G P ++ + R G+ V L Y
Sbjct: 135 AGLVDEYRIVLAPVAVGGGTPFFPTLPSWISLRLLENRTFPCGT-VLLRY 183
>gi|21229130|ref|NP_635052.1| deoxycytidylate deaminase [Methanosarcina mazei Go1]
gi|20907690|gb|AAM32724.1| Deoxycytidylate deaminase [Methanosarcina mazei Go1]
Length = 172
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG--IVIGRGVT----AYGGCPHA 55
+S D M A+ ++ + +I+ ++G+G H
Sbjct: 17 KLSDRDI--MCIAVLLAQKSYDEGG--CPIGGVIIDSKTHRIVGKGHNTLVQDNDPYNHG 72
Query: 56 EVQALEEAG-EEARGATAYVTLEPCSHY 82
E A+ +AG ++ AT + TL PC
Sbjct: 73 ETSAIRDAGRQDFSNATIFTTLSPCDVC 100
>gi|111222959|ref|YP_713753.1| hypothetical protein FRAAL3547 [Frankia alni ACN14a]
gi|111150491|emb|CAJ62190.1| conserved hypothetical protein; putative NAD(P)-binding
Rossmann-fold and reductase domains [Frankia alni
ACN14a]
Length = 312
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 57/241 (23%), Gaps = 11/241 (4%)
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182
G + + + T + A+ G + K
Sbjct: 70 GTSTPPGGFPQLDDDAWQHTFTMTLMPTVRTTRAALRLRGAPVCTPGTDSRKAGAMRKLI 129
Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241
+ I + P H + + S T
Sbjct: 130 YGMNLTLDGYIAAAGDDLGWSGPPSDELFQWWLGHEQASGLSLYGRRLWEAMSSYWPTGD 189
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEG 294
P E + K + +L+T +T L + G
Sbjct: 190 QQPDATPAEIEFARNWRDTPKVVFSSTIAKVDGNTRLVTGDAIAEITRLKAEDGGPMTIG 249
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
GA +A + + + L+D + +++G G P N V F G V
Sbjct: 250 GATLAGAAMRAGLIDEYAIVAHPVLVGS-GTPFFTALDSW-VNLNLVETRTFPGGVVLTR 307
Query: 354 Y 354
Y
Sbjct: 308 Y 308
>gi|299779161|ref|YP_003734355.1| Cd dCMP deaminase [Enterobacteria phage IME08]
gi|298105890|gb|ADI55534.1| Cd dCMP deaminase [Enterobacteria phage IME08]
Length = 181
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 52/197 (26%), Gaps = 69/197 (35%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M S+ ++ A S+ + V +I K+G +I G G P
Sbjct: 1 MKAST----YLQIAYLISQESKCCSWK---VGAVIEKNGRIISTGY---NGSPSGGVNCC 50
Query: 54 -----------------------------------------HAEVQALEEA---GEEARG 69
HAE+ A+ A G G
Sbjct: 51 DHAVEQDWTRVVYDPARMSHKSVLLKEHRMAHAAWSSKNEIHAELNAILFAARTGSSIDG 110
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YVTL PC+ +S + + R L + GI V +
Sbjct: 111 ATMYVTLSPCADCAKSIA--------QSGIKTLVYAELYDRNPEGWDDILRESGIEVIQY 162
Query: 130 MESEGKIFLHAYLTRQV 146
+ + +
Sbjct: 163 NRTGLRSLNWESIQNYC 179
>gi|38505611|ref|NP_942232.1| hypothetical protein sll5076 [Synechocystis sp. PCC 6803]
gi|38423635|dbj|BAD01846.1| sll5076 [Synechocystis sp. PCC 6803]
Length = 181
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
++++ L RG L ++GG + F++ L+ +I+ + I+IG GIP
Sbjct: 93 MSVPPREVVCRLSKRGFQHLYIDGGKTIQG-FLSEGLIQQLIITKVPILIG-EGIPLF-S 149
Query: 331 EGYLEKNFMCVRRDYFGS 348
+ + F +
Sbjct: 150 ALPHDVRLHHLETRQFEN 167
>gi|260459843|ref|ZP_05808097.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259034645|gb|EEW35902.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 185
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 11/154 (7%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ ++ ++ + + E D K +
Sbjct: 33 HQHFNDMMRRASVVLAGRRMYEMMRFWDSPDRETGDTEVERDFACAWRETPKIVFSTTLR 92
Query: 271 DCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ +L+ G V SL E GGA +A S + LVD LY +V+G G
Sbjct: 93 EVGPNARLVNGDAGTTVRSLKAETDGLVILGGADLAASLSRAGLVDEFRLYMHPVVLGAG 152
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
P + + + V L Y
Sbjct: 153 K---PYFQPGQSLTLRPLGTESLTQGVTLLRYAP 183
>gi|330502248|ref|YP_004379117.1| deaminase-reductase domain-containing protein [Pseudomonas
mendocina NK-01]
gi|328916533|gb|AEB57364.1| deaminase-reductase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 192
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG+ +A + + L+D +++ ++G G PL +E++ +
Sbjct: 104 EAGFQRIWLVGGSLLAGNCYTAGLIDEVVINLVPHLLGAG---VPLLATGMERSLTLSEQ 160
Query: 344 DYFGSDVC-LEYIGKN 358
F S L Y +
Sbjct: 161 RRFDSGTLQLHYQVQK 176
>gi|300785326|ref|YP_003765617.1| hypothetical protein AMED_3429 [Amycolatopsis mediterranei U32]
gi|299794840|gb|ADJ45215.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 191
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G A + + ++ L+D L +++G G E ++N V + +G+
Sbjct: 123 IIVAGSATLNRALADAGLIDRYHLLVFPVLLGA-GKRLFSETDKDKQNLKLVESEAYGNG 181
Query: 350 V-CLEY 354
V L Y
Sbjct: 182 VQKLVY 187
>gi|294877862|ref|XP_002768164.1| deoxycytidylate deaminase, putative [Perkinsus marinus ATCC 50983]
gi|239870361|gb|EER00882.1| deoxycytidylate deaminase, putative [Perkinsus marinus ATCC 50983]
Length = 365
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 32/127 (25%), Gaps = 34/127 (26%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------- 53
+D FMS A + S +IV D ++ G G P
Sbjct: 221 WDDYFMSVAFLTAMRSKDRES---RGGVVIVNDQNRIVAVGY---NGMPRGIADKDLPWA 274
Query: 54 ---------------HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
HA + A+ + R Y T PC + +
Sbjct: 275 SHHEDKAQEKHMYMCHATINAIMNKNQHSVRDCRIYATAFPCCECAKFISPSMQAGRLMF 334
Query: 98 RRVVVCV 104
+ +
Sbjct: 335 SLAGISM 341
>gi|6322425|ref|NP_012499.1| Tad2p [Saccharomyces cerevisiae S288c]
gi|1352970|sp|P47058|TAD2_YEAST RecName: Full=tRNA-specific adenosine deaminase subunit TAD2;
AltName: Full=tRNA-specific adenosine-34 deaminase
subunit TAD2
gi|1008159|emb|CAA89326.1| unnamed protein product [Saccharomyces cerevisiae]
gi|6434057|emb|CAB60629.1| tRNA-specific adenosine-34 deaminase subunit Tad2p/ADAT2
[Saccharomyces cerevisiae]
gi|51013795|gb|AAT93191.1| YJL035C [Saccharomyces cerevisiae]
gi|151945050|gb|EDN63301.1| tRNA-specific adenosine deaminase subunit [Saccharomyces
cerevisiae YJM789]
gi|285812866|tpg|DAA08764.1| TPA: Tad2p [Saccharomyces cerevisiae S288c]
Length = 250
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ V G V+ G+ G HAE
Sbjct: 2 QHIKHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|307105321|gb|EFN53571.1| hypothetical protein CHLNCDRAFT_13956 [Chlorella variabilis]
Length = 131
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 30 SVACLIVKD--GIVIGRGVT----AYGGCPHAEVQALEEAGEE-----ARGATAYVTLEP 78
+IV G V+G G H E++A+ +A + G Y + +P
Sbjct: 5 CFGAVIVDKETGEVVGEGYNKVILHNDPTWHGEMEAIRKACAKRGSPHLPGTVLYTSAQP 64
Query: 79 CSHYGRSPP 87
C +
Sbjct: 65 CPMCSTAIM 73
>gi|293371006|ref|ZP_06617548.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292633936|gb|EFF52483.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 172
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQKTDILVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y ++ G+G ++ + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMAGKG---IGFIGETFGSHWKLSESRVLDNGVV 162
>gi|315443623|ref|YP_004076502.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
gi|315261926|gb|ADT98667.1| cytosine/adenosine deaminase [Mycobacterium sp. Spyr1]
Length = 146
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
+ + A+ +R + + + DG ++G G HAE A A
Sbjct: 5 QMLDVAVEEARKGLAEGGI--PIGAALFAADGTLLGSGHNRRVQLDDPSLHAETDAFRNA 62
Query: 64 GEE--ARGATAYVTLEPCSHYG 83
G + R T TL PC +
Sbjct: 63 GRQRGYRSTTMVTTLSPCWYCS 84
>gi|78212739|ref|YP_381518.1| tRNA-adenosine deaminase [Synechococcus sp. CC9605]
gi|78197198|gb|ABB34963.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. CC9605]
Length = 174
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
R+M L+ + VGL P VA +I+ G IG G HAE+ AL++A
Sbjct: 26 RWMDVLLQRAE-GVGLEGEVP-VAAVILDGQGRAIGHGRNRRENNRDPLGHAELVALQQA 83
Query: 64 GE-----EARGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 84 AIVQNDWRFNNCTLIVTLEPCPMC 107
>gi|256392344|ref|YP_003113908.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256358570|gb|ACU72067.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 190
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LV + H+ I LVD I L +V+GEG K + G +
Sbjct: 123 VLVYASFQLVHALIEQDLVDEIRLMVIPVVVGEGAR--LFGTAGGVKPLRLISTRSVGEN 180
Query: 350 VCL 352
+
Sbjct: 181 IVF 183
>gi|120600429|ref|YP_965003.1| deaminase-reductase domain-containing protein [Shewanella sp.
W3-18-1]
gi|120560522|gb|ABM26449.1| bifunctional deaminase-reductase domain protein [Shewanella sp.
W3-18-1]
Length = 183
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 100 NISKQLRERGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-SDVPQAI 156
Query: 337 NFMCVRRDYFGSD-VCLEYIGKN 358
M + + + V Y +
Sbjct: 157 PLMPIHTQQYDNGYVQTRYRVID 179
>gi|161622500|ref|YP_001595339.1| Cd dCMP deaminase [Enterobacteria phage JS98]
gi|238695364|ref|YP_002922557.1| Cd dCMP deaminase [Enterobacteria phage JS10]
gi|160213806|gb|ABX11145.1| Cd dCMP deaminase [Enterobacteria phage JS98]
gi|220029500|gb|ACL78434.1| Cd dCMP deaminase [Enterobacteria phage JS10]
Length = 181
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 52/197 (26%), Gaps = 69/197 (35%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M S+ ++ A S+ + V +I K+G +I G G P
Sbjct: 1 MKAST----YLQIAYLISQESKCCSWK---VGAVIEKNGRIISTGY---NGSPSGGVNCC 50
Query: 54 -----------------------------------------HAEVQALEEA---GEEARG 69
HAE+ A+ A G G
Sbjct: 51 DHAVEQDWTRVVYDTARMSHKSILLKEHRMAHAAWSSKNEIHAELNAILFAARTGSSIDG 110
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
AT YVTL PC+ +S + + R L + GI V +
Sbjct: 111 ATMYVTLSPCADCAKSIA--------QSGIKTLVYAELYDRNPEGWDDILRESGIEVIQY 162
Query: 130 MESEGKIFLHAYLTRQV 146
+ + +
Sbjct: 163 NRTGLRSLNWESIQNYC 179
>gi|118602342|ref|YP_903557.1| CMP/dCMP deaminase, zinc-binding [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567281|gb|ABL02086.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 148
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 31/101 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---------- 53
+D R++S A S W + V + V + V+ +G G P
Sbjct: 6 KWDERYLSLAKEISTWSK---DPSTQVGAITVGQKKEVLSQGF---NGFPRGIHDSDDRY 59
Query: 54 -----------HAEVQALEEA---GEEARGATAYVTLEPCS 80
HAE+ A+ A G GAT YV P
Sbjct: 60 NHRETKYQFVVHAEMNAIYNATYSGTSLDGATLYVYGLPIC 100
>gi|256397666|ref|YP_003119230.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
gi|256363892|gb|ACU77389.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM
44928]
Length = 157
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 22/75 (29%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----------------EA 67
+ +I+ G VI +G HAE+ A+ A
Sbjct: 18 PIGAVILDPTGTVIAQGRNTREAEGDPTGHAEIVAIRSAAHTLHTKAAQTDPKAPPTWRL 77
Query: 68 RGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 78 TDCTLVVTLEPCPMC 92
>gi|171741935|ref|ZP_02917742.1| hypothetical protein BIFDEN_01034 [Bifidobacterium dentium ATCC
27678]
gi|306824050|ref|ZP_07457423.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Bifidobacterium dentium ATCC 27679]
gi|309800761|ref|ZP_07694896.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bifidobacterium dentium JCVIHMP022]
gi|171277549|gb|EDT45210.1| hypothetical protein BIFDEN_01034 [Bifidobacterium dentium ATCC
27678]
gi|304552703|gb|EFM40617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Bifidobacterium dentium ATCC 27679]
gi|308222606|gb|EFO78883.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bifidobacterium dentium JCVIHMP022]
Length = 151
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 30 SVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G VIGRG HAEV+A+ EA T VTLEPC
Sbjct: 24 PVGAVVLDAAGQVIGRGRNLREADRDPLAHAEVKAMTEAAHALGTWNLADCTLIVTLEPC 83
Query: 80 SHYGRSP 86
+
Sbjct: 84 PMCAGAC 90
>gi|300024336|ref|YP_003756947.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526157|gb|ADJ24626.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 176
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 12/172 (6%)
Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
+ V + + + + +R + + + + P D
Sbjct: 8 MNVSLDGYVDHEKFAPGPMLFRHWIEQVRSVTGSVYGRRMYEIMRYWDEDHPEWTPELQD 67
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINS 305
+ K ++ L+ V + L E G +A S
Sbjct: 68 FAAAWRSQPKWVVSRSLTSVGPNATLVGDNVEAVIRGLKAERAGEIHVSGPKLAGSLSEL 127
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
L+D LY +V+G G P D G D + L Y+
Sbjct: 128 ALIDEYRLYFHPVVLG-RGAPFFAGPR---PRLRLEASDLIGEDAIRLTYVP 175
>gi|182412176|ref|YP_001817242.1| deaminase-reductase domain-containing protein [Opitutus terrae
PB90-1]
gi|177839390|gb|ACB73642.1| bifunctional deaminase-reductase domain protein [Opitutus terrae
PB90-1]
Length = 215
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 1/107 (0%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ D P + + + + +
Sbjct: 75 MGRNMFGPIRGDWPDDHWKGWWGDTPPYHTPVFVLTHHPRASLQMEGGTTFHFVTDGIHA 134
Query: 278 LLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L G + V GGAA ++ + LVD + L + I++G G
Sbjct: 135 ALQRATEAAGGQDVRVGGGAATIRQYLQAGLVDQLHLAIAPIILGSG 181
>gi|325096270|gb|EGC49580.1| DRAP deaminase [Ajellomyces capsulatus H88]
Length = 289
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 14/69 (20%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI------------VKDGIVIGRGVT-AYGGCP 53
++ A L ++ TN V ++ + V+ G T G
Sbjct: 21 HLHYLRACLSLAQQSPPK-PTNFRVGAILLSRTLLSSGRPRTYNDTVLSTGYTLELPGNT 79
Query: 54 HAEVQALEE 62
HAE AL +
Sbjct: 80 HAEQCALAK 88
>gi|302872756|ref|YP_003841392.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
OB47]
gi|302575615|gb|ADL43406.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor obsidiansis
OB47]
Length = 143
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
VA +VKDG +I + HAE+ A+ +A ++ R +VT EPC
Sbjct: 21 PVAAAVVKDGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPCPMC 79
>gi|315919444|ref|ZP_07915684.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693319|gb|EFS30154.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 148
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGGAA 297
I P + + ++ LT + R + + V GG
Sbjct: 29 IFEHWGGWPYKSKKTFVVSHYDTNVTEKENVTFLTDMPLRAINELKSSSETDIQVIGGGK 88
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
S I + L+D I LY +++G+G + + VCL Y
Sbjct: 89 FITSLIEASLLDEITLYIVPVMLGDGIR---FIGKTFGSKWELTGHRVIDNQVVCLTY 143
>gi|325000060|ref|ZP_08121172.1| cytosine/adenosine deaminase [Pseudonocardia sp. P1]
Length = 158
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAEVQ 58
+ D + + + +G ++V G+V G H E +
Sbjct: 1 MDEQDRVHLRRCVELAEQALGAGDE--PFGSVLVDASGVVRAEDRNRVAGGDPTRHPEFE 58
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPP 87
A E GAT Y + E C +
Sbjct: 59 LARRATELLTPGERAGATVYTSGEHCPMCAAAHA 92
>gi|319424867|gb|ADV52941.1| bifunctional deaminase-reductase domain protein [Shewanella
putrefaciens 200]
Length = 183
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L V+GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 101 ISKQLKTRGFKHLYVDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-SDVPQAIQ 157
Query: 338 FMCVRRDYFGSD-VCLEYIGKN 358
M + + + V Y +
Sbjct: 158 LMPIHTQQYDNGYVQTRYRVID 179
>gi|328773882|gb|EGF83919.1| hypothetical protein BATDEDRAFT_84642 [Batrachochytrium
dendrobatidis JAM81]
Length = 594
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 39/156 (25%), Gaps = 15/156 (9%)
Query: 10 FMSAALRFSRWHVGLTSTNP-------SVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61
FM AL + S+ P C++V VI G HA V+A+
Sbjct: 49 FMLMAL---WMELYPCSSTPKTSQVVRPTGCVLVDTRDRVIAL---ESTGEAHAIVRAIL 102
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ RG YV+ PC+ + A + D
Sbjct: 103 RCPYDPRGCDIYVSRFPCAMCTKVMVQAGIRKIYYFPAQNWEM-DWAAHCELEMQIDQGF 161
Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
V + S LK
Sbjct: 162 LSPEVSSLPLVMPADSKTGNTHVDHNDDSIHQLKRT 197
>gi|148272847|ref|YP_001222408.1| putative pyrimidine reductase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830777|emb|CAN01717.1| putative pyrimidine reductase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 248
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
++ L GRG+T ++ EGG A+A S +++ VD + L S +
Sbjct: 161 RMSGDVVVDALRGRGLTHVVCEGGPALAASLVSAGRVDELCLTTSPEL 208
>gi|291303195|ref|YP_003514473.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290572415|gb|ADD45380.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 176
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ RG+T + +GG + SF+ + +D I+ + ++IG G E +
Sbjct: 97 DLVADFDKRGITHVYPDGG-RLIQSFVRAGRIDRFIISVAPVLIGAGHR--LFGELSHDV 153
Query: 337 NFMCVRRDYFGS 348
G
Sbjct: 154 PLRLDSVADVGG 165
>gi|148258098|ref|YP_001242683.1| putative pyrimidine reductase [Bradyrhizobium sp. BTAi1]
gi|146410271|gb|ABQ38777.1| Putative pyrimidine reductase [Bradyrhizobium sp. BTAi1]
Length = 179
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 4/178 (2%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ A G + D + +L L + +
Sbjct: 1 MMWNMMTLDGMVAGAEGDISWHEDVWGPELEQFSEAQLKDAGGLLFGRVTYDLMAGYWPS 60
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
A + V + + + + L L + G A A
Sbjct: 61 QNGAIAEFMNAIPKYVASRKLSVLAWSNAHLLGDQPAAEVDRLKRASAKDLFLFGSADFA 120
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+ + L+D + + V+G G +PL + L + S V + Y+
Sbjct: 121 ATLMAHDLIDEFRIAINPRVLGGG---APLFKPGLAMKLRLIDSRPLSSGAVIVRYVP 175
>gi|3599384|gb|AAC62690.1| dCMP deaminase [Cenarchaeum symbiosum]
Length = 213
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 30/118 (25%), Gaps = 41/118 (34%)
Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----------- 52
S+D FM A ++ + V +IV+D + G
Sbjct: 45 SWDEYFMLQA-ELAKLRSNCMVRK---VGAVIVRDHRQLATGYNGTPPGVKNCFEGGCER 100
Query: 53 --------------------PHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRS 85
HAE A+ G AT Y T PC +
Sbjct: 101 CIERMEGKIRSGEGLDRCLCNHAEANAIMHCAILGIGAGGGNATMYTTFSPCLECTKM 158
>gi|218680076|ref|ZP_03527973.1| hypothetical protein RetlC8_14760 [Rhizobium etli CIAT 894]
Length = 176
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 12/129 (9%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-- 293
+ P + K ++ L+ + + +L E
Sbjct: 51 MRYWDDDHPEWDAEKQAFAAAWRNQPKWVVSRSLTSVGPNASLVGDDLEGTIRALKAERD 110
Query: 294 -----GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
G +A S L+D +Y +V+G G P V D
Sbjct: 111 GEIEVAGPDMAQSLTELGLIDEYHIYLHPVVLGH-GKPYFAGPR---PPLRLVSHDRVDE 166
Query: 349 D-VCLEYIG 356
+ + L Y+
Sbjct: 167 NVIKLTYVP 175
>gi|297199216|ref|ZP_06916613.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|197715056|gb|EDY59090.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 190
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 41/163 (25%), Gaps = 11/163 (6%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ E + + S T P +
Sbjct: 25 WSGPPSHELFQWWLDHEQASALTLYGRKL-WEAMSSYWPTGDEQPGATPAQIAFARNWRD 83
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLVDSII 312
K + +L+T +T L + GGA +A + + + L+D
Sbjct: 84 TPKVVFSSTIDKVDWNTRLVTGDAIAEITRLKAEDGGPMTIGGATLAGAAMRAGLIDEYA 143
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ +++G G P N V G V Y
Sbjct: 144 IATHPVLVGS-GTPFFTALDNW-VNLNLVETRTCPGGVVLTRY 184
>gi|123367029|ref|XP_001296868.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121876711|gb|EAX83938.1| hypothetical protein TVAG_001410 [Trichomonas vaginalis G3]
Length = 238
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPL 329
+ + + L VEGG + S + +++VD + L S + +P
Sbjct: 149 WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSLLLSATADATNSVSLFEANPY 208
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
F + S+ + ++Y K
Sbjct: 209 MMNTDPVEFTPKSIEKINSNGIWIKYTPK 237
>gi|116513488|ref|YP_812394.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116092803|gb|ABJ57956.1| Deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 148
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 25/97 (25%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA-------------- 55
M AL ++ T V ++VKD ++ G + G H
Sbjct: 1 MMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGHCVR 57
Query: 56 ----EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 58 TIHSEMNSLISCAKNGVSTDDTEIYVTHFPCYNCTKH 94
>gi|108804267|ref|YP_644204.1| bifunctional deaminase-reductase-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108765510|gb|ABG04392.1| bifunctional deaminase-reductase-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 251
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332
L +L G G +L+EGG ++ I L D + L S + E P L G
Sbjct: 167 ALRALLEGFGARRVLIEGGPRLSGEAIYRHLADELFLTVSPRISREPPEALRRPFELPPG 226
Query: 333 YLEKNFMCVRRDYFGSDVCLEYI 355
+ G ++ L Y
Sbjct: 227 GPPVGCTLLSAHAAGGELFLRYR 249
>gi|316978726|gb|EFV61670.1| serine/threonine-protein phosphatase PP1 [Trichinella spiralis]
Length = 537
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 3 VSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCP--- 53
S+ D R+M + ++ G V C IV K G VI +
Sbjct: 133 FSNADVFNADRYMRMCIDSAKKVKGQVG----VGCAIVEPKTGTVISVANNSLASENPIQ 188
Query: 54 HAEVQALEEAGE 65
HA + A++ E
Sbjct: 189 HAVMCAIDLVAE 200
>gi|123367027|ref|XP_001296867.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123500267|ref|XP_001327815.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121876710|gb|EAX83937.1| hypothetical protein TVAG_001400 [Trichomonas vaginalis G3]
gi|121910749|gb|EAY15592.1| hypothetical protein TVAG_496110 [Trichomonas vaginalis G3]
Length = 238
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPL 329
+ + + L VEGG + S + +++VD + L S + +P
Sbjct: 149 WKTVMSKLKKDFHINVLSVEGGGMINWSVLKAKIVDEVSLLLSATADATNSVSLFEANPY 208
Query: 330 EEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
F + S+ + ++Y K
Sbjct: 209 MMNTDPVEFTPKSIEKINSNGIWIKYTPK 237
>gi|111223988|ref|YP_714782.1| putative DNA binding protein [Frankia alni ACN14a]
gi|111151520|emb|CAJ63239.1| Putative DNA binding protein [Frankia alni ACN14a]
Length = 232
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 27/94 (28%)
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + V + + L G
Sbjct: 86 NDPEWRGWWGEDPPFHTPVFVLTHERRPDLVMAGGTTFHFLSASPEEALQLAAGAAGGRD 145
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG V F+ + L+D++ + + I++G G
Sbjct: 146 VRIGGGPTVVRDFLRAGLIDALHVAIAPILLGGG 179
>gi|126434166|ref|YP_001069857.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
JLS]
gi|126233966|gb|ABN97366.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
JLS]
Length = 188
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 8/173 (4%)
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
I G + DP + L S TA P
Sbjct: 15 YIADAQGDIDWSDPSEELHQYWNDFERETTLAFYGRRLYELMSAYWPTADKTPDATPLIV 74
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFIN 304
D + K + +L VT L E GA +A +
Sbjct: 75 DFAHIWRGMPKVVFSRTLESVDWNSRLERGDPVEVVTRLKAETDGNLEVAGATLAAPIVQ 134
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ LVD + + + +G G P ++ + R G+ V L Y K
Sbjct: 135 AGLVDEYRIVLAPVAVGGGTPFFPTLPSWISLRLLENRTFPCGT-VLLRYEAK 186
>gi|58531995|emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa Japonica Group]
Length = 633
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
V AL +A + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G+
Sbjct: 47 VFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGI 106
Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
+ L GI V ME E + +
Sbjct: 107 ERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLS 151
>gi|319950276|ref|ZP_08024197.1| hypothetical protein ES5_11906 [Dietzia cinnamea P4]
gi|319436074|gb|EFV91273.1| hypothetical protein ES5_11906 [Dietzia cinnamea P4]
Length = 262
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRD 344
G +L EGG + + +D + L S ++G +P + F
Sbjct: 189 GHRVVLCEGGPTWLGELVAADRLDELCLSISP-LMGGDPLPVCVNPAGAGIARFALKGTM 247
Query: 345 YFGSDVCLEY 354
G + L Y
Sbjct: 248 ADGDTLFLRY 257
>gi|190346556|gb|EDK38668.2| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
6260]
Length = 281
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 22/205 (10%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
K+ +TL A S D+ I A I+G +K+ H +R++ DAI+VGIGTV
Sbjct: 50 PQNSTPHKKPFVTLTYAQSLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTV 109
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
LADDP+L CR + P ++LDP K S + + + ++
Sbjct: 110 LADDPKLNCRHEAGKS--PRPVVLDPSGKWDYKSSQLHQLVDQNTDDIKALAPYIIVRDD 167
Query: 261 RKKNINII----------------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ ++ + L ++S+++EGGA + + ++
Sbjct: 168 VDIDTKNEKEVSRQGGKYIRLSLSRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLS 227
Query: 305 ----SRLVDSIILYRSQIVIGEGGI 325
+ S+I+ + +GE G+
Sbjct: 228 FQKTEAFIHSLIITIGPVYLGEQGV 252
>gi|38640200|ref|NP_944156.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
gi|33414885|gb|AAQ17928.1| Cd dCMP deaminase [Aeromonas phage Aeh1]
Length = 182
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 54/129 (41%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------ 53
M ++ F+ A ++ ++ V +I KD I G G P
Sbjct: 1 MKTTT----FLQNAFLVAQESKCVSY---RVGAIISKDDRPISSGYNGTISGQPNCDEVA 53
Query: 54 -------------------------------------HAEVQALEEA---GEEARGATAY 73
HAE+ A+ A G+ GAT Y
Sbjct: 54 EENGWAEYVDVPGVGKELRLRQDRSDEYSAWAKSNVIHAEMNAILFAAHGGKSIEGATMY 113
Query: 74 VTLEPCSHY 82
T+ PC
Sbjct: 114 CTMAPCPEC 122
>gi|5051806|emb|CAB45035.1| hypothetical protein [Amycolatopsis orientalis]
Length = 202
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 32/142 (22%), Gaps = 3/142 (2%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ E+ + + V
Sbjct: 50 NQAEIDQMTAATAFIMGRNMFGPVRGEWDRPWNGWWGDNPPFHGPVFVLTHHERDPQPMD 109
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ L G + + GGA + ++ + L+D + L+ +G
Sbjct: 110 GGTTYHFVTDGIESALEQARAAAGDGEVTILGGATTINQYLAAGLIDEVRLHIVPFTLGA 169
Query: 323 GGIPSPLEEGYLEKNFMCVRRD 344
G L EG V+
Sbjct: 170 GTR---LFEGVPPLKLEQVKSR 188
>gi|168059034|ref|XP_001781510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667051|gb|EDQ53690.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+ A+ +R +G + + G ++GRG HAE A +AG
Sbjct: 1 MLDVAIAEARTGLGEDGI--PIGAALFDAGGQLLGRGRNRRVQENDPSVHAETDAFRKAG 58
Query: 65 --EEARGATAYVTLEPCSHYG 83
R TL PC +
Sbjct: 59 RQRSYRDTIMVTTLAPCWYCS 79
>gi|50290647|ref|XP_447756.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527067|emb|CAG60703.1| unnamed protein product [Candida glabrata]
Length = 259
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 6 FDAR--FMSAALRFSRWHV--GLTSTNPSVACLIV--KDGIVIGRGVTAYG----GCPHA 55
D + +AL+ +R+ + G T VAC+ V K V+ G+ G HA
Sbjct: 1 MDKYLKHIDSALKLARYALDHGET----PVACVFVHEKSDSVVAYGLNDTNDSLSGTAHA 56
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
E A+ R A ++ + + G
Sbjct: 57 EFVAMRM----LRDAVQAQGYASVQLKQLFKEIVCYVTVEPCIMCASALKQMGIHKIVFG 112
Query: 116 LQWLSQKG 123
G
Sbjct: 113 CGNDRFGG 120
>gi|89056237|ref|YP_511688.1| CMP/dCMP deaminase, zinc-binding [Jannaschia sp. CCS1]
gi|88865786|gb|ABD56663.1| CMP/dCMP deaminase zinc-binding protein [Jannaschia sp. CCS1]
Length = 150
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 34/102 (33%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCP------------- 53
RFM + W + V C+IV + V G G P
Sbjct: 10 RFMGLCDHIASWSEDR---DRHVGCVIVGPQGNEVRATGY---NGLPRGVSDTNEARFDR 63
Query: 54 ----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ A G +G T YV PC+
Sbjct: 64 ASGEKFFWGEHAERNAIYNAARIGVSLQGCTIYVNRFPCADC 105
>gi|293369608|ref|ZP_06616186.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292635312|gb|EFF53826.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 172
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L I + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRIYELKQETDMLVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y +++G+G + + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETFGSLWKLSESRVLDNGVV 162
>gi|271965977|ref|YP_003340173.1| cytosine/adenosine deaminase [Streptosporangium roseum DSM 43021]
gi|270509152|gb|ACZ87430.1| cytosine/adenosine deaminase [Streptosporangium roseum DSM 43021]
Length = 141
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAEV 57
++ D RF+ A+ + + +P L+ DG VI T H E
Sbjct: 1 MTHDDERFLRRAIELA--GTARAAGDPPFGSLLTGPDGSVIAEDRNTVLTDSDITAHPE- 57
Query: 58 QALEEAGEEARG--------ATAYVTLEPCSHY 82
L+ A AR T Y + +PC
Sbjct: 58 --LKLARWAARELDPETAAATTMYTSCQPCGMC 88
>gi|126176056|ref|YP_001052205.1| deaminase-reductase domain-containing protein [Shewanella baltica
OS155]
gi|125999261|gb|ABN63336.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS155]
Length = 183
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP +
Sbjct: 101 ISEQLKTRGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-GDLAQALQ 157
Query: 338 FMCVRRDYFGS 348
M + + +
Sbjct: 158 LMPIHTQQYDN 168
>gi|291165047|gb|ADD81075.1| gp077 [Rhodococcus phage ReqiPoco6]
Length = 195
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 37/150 (24%), Gaps = 45/150 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCP---------- 53
S+D M A+ + V ++ D +I G G P
Sbjct: 7 SWDEYGMKLAVHAAERADCTRR---QVGAVLMAADRSIISSGY---NGGPSKGKSCLKGE 60
Query: 54 -------HAEVQA---------------------LEEAGEEARGATAYVTLEPCSHYGRS 85
HAE+ A L A + G+T Y+T EPC
Sbjct: 61 CPRGRLTHAELPADSAYDTGGGTCVALHAEWNVLLRTAWHQFEGSTLYITEEPCHICKVM 120
Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
V + + +
Sbjct: 121 ISGTAIHRVVAPGYEWVRDYNGRTKTERKW 150
>gi|260171125|ref|ZP_05757537.1| hypothetical protein BacD2_04591 [Bacteroides sp. D2]
Length = 173
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGGAA 297
I P + + ++ LT + R + + V GG
Sbjct: 54 IFEHWGGWPYKSKKTFVVSHYDTNVTEKENVTFLTDMPLRAINELKSSSETDIQVIGGGK 113
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
S I + L+D I LY +++G+G + + VCL Y
Sbjct: 114 FITSLIEASLLDEITLYIVPVMLGDGIR---FIGKTFGSKWELTGHRVIDNQVVCLTY 168
>gi|207343953|gb|EDZ71253.1| YJL035Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 250
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ V G V+ G+ G HAE
Sbjct: 2 QHVKHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|297190981|ref|ZP_06908379.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721894|gb|EDY65802.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
Length = 213
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 3/130 (2%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ + V +
Sbjct: 74 FIMGRNMFGPVRGEWDRRWNGWWGDDPPFHGPVFVLTHHAREPQPMDGGTTYHFVTDGIT 133
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L G + V GGA + ++ + LVD + L+ + +G G L EG
Sbjct: 134 SALSHARAAAGDGDVSVLGGATTINQYLAAGLVDELRLHIVPLTLGAGTR---LFEGVPP 190
Query: 336 KNFMCVRRDY 345
V
Sbjct: 191 LELEQVTSRP 200
>gi|160898463|ref|YP_001564045.1| deaminase-reductase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160364047|gb|ABX35660.1| bifunctional deaminase-reductase domain protein [Delftia
acidovorans SPH-1]
Length = 186
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ G +L + GG +A F ++ L+D +IL +G G L
Sbjct: 103 VHAQMQAAAGGRNLWIMGGGDLAGQFYDAGLLDEMILSVGSATLGRG--KPLFPRRVLHP 160
Query: 337 NFMCVRRDYFGSDV-CLEYIGKN 358
+ G + L Y +
Sbjct: 161 VLRLLSVRQIGEGMAVLHYEVRK 183
>gi|312792797|ref|YP_004025720.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312878594|ref|ZP_07738458.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor
lactoaceticus 6A]
gi|311794629|gb|EFR11094.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor
lactoaceticus 6A]
gi|312179937|gb|ADQ40107.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 143
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----G 64
M + ++ S + VA +VKDG ++ + HAE+ A+ +A
Sbjct: 7 MKTLIEYASR-----SNDIPVAAAVVKDGKIVSIKRNDSKKAIYHAEILAIIDATSKLST 61
Query: 65 EEARGATAYVTLEPCSHY 82
++ R +VT EPC
Sbjct: 62 KDLRSCEMFVTKEPCPMC 79
>gi|190409464|gb|EDV12729.1| tRNA-specific adenosine deaminase 2 [Saccharomyces cerevisiae
RM11-1a]
Length = 250
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ V G V+ G+ G HAE
Sbjct: 2 QHVKHMRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|313123056|ref|YP_004033315.1| deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312279619|gb|ADQ60338.1| Deoxycytidylate deaminase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 148
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 25/97 (25%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHA-------------- 55
M AL ++ T V ++VKD ++ G + G H
Sbjct: 1 MMQALVIAQRS---TCDRALVGSVLVKDKRILSTGYNGSVSGQDHCDDVGHQLVDGHCVR 57
Query: 56 ----EVQAL---EEAGEEARGATAYVTLEPCSHYGRS 85
E+ +L + G YVT PC + +
Sbjct: 58 TIHSEMNSLISCAKNGVSTDNTEIYVTHFPCYNCTKH 94
>gi|332704280|ref|ZP_08424368.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
str. Walvis Bay]
gi|332554429|gb|EGJ51473.1| CMP/dCMP deaminase, zinc-binding protein [Desulfovibrio africanus
str. Walvis Bay]
Length = 174
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA 63
M ALR + +G V ++ +G ++ + A HAE+ L +
Sbjct: 23 MDVALRQAHEAGSMGEV----PVGAALLSAEGSLLAQAHNAPLSLNDPTAHAEMLCLRQG 78
Query: 64 GE-----EARGATAYVTLEPCSHY 82
G VTLEPC
Sbjct: 79 ASTLGNYRLTGCILAVTLEPCIMC 102
>gi|312198152|ref|YP_004018213.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311229488|gb|ADP82343.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 190
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LV +A + I L D I L +++G+G +K + G
Sbjct: 122 DILVYASYQLARTLIEHDLADEIRLVVFPVILGDGDR--LFGATSDKKALRLISTRPLGE 179
Query: 349 DV-CLEY 354
+ L Y
Sbjct: 180 GLSFLTY 186
>gi|239942137|ref|ZP_04694074.1| hypothetical protein SrosN15_14142 [Streptomyces roseosporus NRRL
15998]
gi|239988601|ref|ZP_04709265.1| hypothetical protein SrosN1_14929 [Streptomyces roseosporus NRRL
11379]
gi|291445585|ref|ZP_06584975.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
gi|291348532|gb|EFE75436.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
Length = 203
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L + G A +A S + + LVD + L + +V+GEG P + R G
Sbjct: 123 RDLQIHGSARLAQSLLAAGLVDELRLAIAPVVVGEGRRLFPPGTTPTGLHLTEQRTTPAG 182
>gi|255718859|ref|XP_002555710.1| KLTH0G15576p [Lachancea thermotolerans]
gi|238937094|emb|CAR25273.1| KLTH0G15576p [Lachancea thermotolerans]
Length = 250
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
++ +TL A S D+ I I+ +K H LR + DAI++G GT LADDP L
Sbjct: 28 QKPFVTLTYAQSLDSRISKGKGLRTTISHPETKTMTHYLRYKHDAIMIGCGTALADDPGL 87
Query: 208 TCRL-----NGLQEHSPMRIILDPHFKLSLDSKIIK-----TALLAPVIIVTENDDPVLA 257
C+ SP +I+DP K + ++ A PVI+V + +
Sbjct: 88 NCKWAPAGKTSSTSSSPRPVIIDPQGKWDFEGSKMQQLFREDAGKPPVIVVRDLGSILKR 147
Query: 258 LAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIILY 314
R +L + G S++VEGGA V + ++ +VDS+I+
Sbjct: 148 HPDATYVSAPSSPAGRFDWLTLMLLLKSEFGFESIMVEGGALVINQLLSRPDVVDSLIVT 207
Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+G G+ + E N V+
Sbjct: 208 VGAKYLGSEGVE--VSPPVGEVNLRNVQW 234
>gi|260806557|ref|XP_002598150.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
gi|229283422|gb|EEN54162.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae]
Length = 200
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 31/80 (38%)
Query: 31 VACLIVK-DGIVIGRGVTAYGGCP--------------------------HAEVQAL-EE 62
V IV + ++G G G P HAE+ A+ +
Sbjct: 54 VGACIVNSEKKIVGIGY---NGMPNGCSDDKLPWSRTAENRLDTKYPYVCHAELNAILNK 110
Query: 63 AGEEARGATAYVTLEPCSHY 82
+ +G T YV L PC+
Sbjct: 111 NSADVKGCTMYVALFPCNEC 130
>gi|42521945|ref|NP_967325.1| putative secreted protein [Bdellovibrio bacteriovorus HD100]
gi|39574475|emb|CAE77979.1| putative secreted protein [Bdellovibrio bacteriovorus HD100]
Length = 216
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L + + + G ++ ++L+D + +++G G S E ++
Sbjct: 133 RKLKKQNGPDIAILGSGSIVAQLAEAKLIDEYSVVVLPLLLGSG--RSQFEGLKSRRDLK 190
Query: 340 CVRRDYFGS-DVCLEYIGKNL 359
V F + +V L Y ++
Sbjct: 191 LVECRSFKNGNVFLRYRPADI 211
>gi|254489981|ref|ZP_05103176.1| hypothetical protein MDMS009_312 [Methylophaga thiooxidans DMS010]
gi|224465066|gb|EEF81320.1| hypothetical protein MDMS009_312 [Methylophaga thiooxydans DMS010]
Length = 186
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G ++GG+ + SF+NS+L+D + + ++ +++G GIP
Sbjct: 115 GHKHAYIDGGSTIT-SFLNSKLIDEMTITKAPVLLG-DGIPLF-GNLSQRVKLENSEAVV 171
Query: 346 FGSD 349
F +D
Sbjct: 172 FPND 175
>gi|298293628|ref|YP_003695567.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
gi|296930139|gb|ADH90948.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
Length = 176
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G +A S + L+D LY +V+G G P V D G D V L
Sbjct: 117 GPELARSLTDLGLIDEYRLYFHPVVLG-RGKPFFAGPR---PPLRLVATDIVGEDTVRLT 172
Query: 354 YIG 356
Y+
Sbjct: 173 YVP 175
>gi|226306946|ref|YP_002766906.1| hypothetical protein RER_34590 [Rhodococcus erythropolis PR4]
gi|226186063|dbj|BAH34167.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 213
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG +A S + LVD L+ + +G G P + + F S + L
Sbjct: 153 GGPTIAASAFAAGLVDECRLFVCPVSVGGGLPALPRGRL----DLRLLEEKTFDSGVIYL 208
Query: 353 EY 354
Y
Sbjct: 209 RY 210
>gi|110634545|ref|YP_674753.1| bifunctional deaminase-reductase-like [Mesorhizobium sp. BNC1]
gi|110285529|gb|ABG63588.1| bifunctional deaminase-reductase-like protein [Chelativorans sp.
BNC1]
Length = 183
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V G A + S + + LVD + + +V+G G ++ L+ + R G
Sbjct: 114 KDVFVFGSADMLDSLLKAGLVDEYRICVAPVVLGGGNPLFKPQDQQLKMHLQGTRPLKTG 173
Query: 348 SDVCLEY 354
+ V + Y
Sbjct: 174 A-VIVTY 179
>gi|284167540|ref|YP_003405818.1| CMP/dCMP deaminase zinc-binding protein [Haloterrigena turkmenica
DSM 5511]
gi|284017195|gb|ADB63145.1| CMP/dCMP deaminase zinc-binding protein [Haloterrigena turkmenica
DSM 5511]
Length = 163
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 1 MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGC 52
MP +FD M A +R + + ++V+D VI R VT
Sbjct: 10 MPEPTFDEFDHEAHMRRAFELAREAIDR--GDRPFGTVLVRDDTVIMADSNRVVTEDDIR 67
Query: 53 PHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
H E+ A E Y + EPC
Sbjct: 68 RHPELHLAYRACRELDPDERAETVMYTSTEPCPMC 102
>gi|94969492|ref|YP_591540.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
versatilis Ellin345]
gi|94551542|gb|ABF41466.1| bifunctional deaminase-reductase-like protein [Candidatus
Koribacter versatilis Ellin345]
Length = 214
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 1/148 (0%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + D + G + D K +
Sbjct: 54 GTRGIDNDFALRSFDNVGAWILGRNMFGPVRGPWPNYDWKGWWGEEPPYHVPTFVLTHHA 113
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
K + L + + GGAA +I + LVD + L
Sbjct: 114 RPSLEMKGGTTFHFVTEGPEIALQRAKEAAQGKDVRIGGGAATIRQYIAAGLVDELHLAL 173
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
S +++G G P + + + V
Sbjct: 174 SPVLLG-EGEPLFSGLNWPKLGYQVVDS 200
>gi|308516912|emb|CBW47017.1| hypothetical protein [Roseovarius sp. 217 phage 1]
Length = 143
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 14 ALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGV-----------------TAYGGCP- 53
AL ++ + + V +I++ D + G T
Sbjct: 9 ALGLAQAVSLRSRDPSTKVGAVIIRPDKTIASMGYNGFPRTMQDKDIWWNDRTEKYARVI 68
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98
HAE+ AL A E G Y T PC + A I
Sbjct: 69 HAEMNALLNAKESVNGMQLYCTH-PCCEHCAKHVIAAGIRHVHFY 112
>gi|302525979|ref|ZP_07278321.1| cytidine/deoxycytidine deaminase [Streptomyces sp. AA4]
gi|302434874|gb|EFL06690.1| cytidine/deoxycytidine deaminase [Streptomyces sp. AA4]
Length = 147
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 11 MSAALRFSR--WHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEA 63
++ A + G + + +DG ++GRG G P HAE A A
Sbjct: 6 LAVAREEAEAGKAEGGV----PIGAALFDRDGKLLGRGHNRRVQDGDPSLHAETAAFRAA 61
Query: 64 GEEA--RGATAYVTLEPCSHYG 83
G R TL PC +
Sbjct: 62 GRRPHYRDTIMVTTLSPCWYCS 83
>gi|323357173|ref|YP_004223569.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
gi|323273544|dbj|BAJ73689.1| cytosine/adenosine deaminase [Microbacterium testaceum StLB037]
Length = 159
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-GRGV--TAYGGCPHAEV 57
+ + D + A+ S+ N L+V DG V+ T HAE
Sbjct: 4 TIDATDLAHLHRAIALSQLARE--HGNHPFGALLVTADGRVVEAENTVLTERDVTGHAET 61
Query: 58 QALEEAGEEARGA-----TAYVTLEPCSHY 82
+ ++ A T Y + EPC+
Sbjct: 62 NLVRRVWKDLDAAELPASTLYTSCEPCAMC 91
>gi|310777941|ref|YP_003966274.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus
DSM 2926]
gi|309747264|gb|ADO81926.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus
DSM 2926]
Length = 159
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQAL 60
+++ + S V S N L+V K+G ++ VT HAE
Sbjct: 2 DHEKYLRRCIEISEESV--ASGNNPFGALLVDKEGNILIESGNIEVTEKDITGHAETTVA 59
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
+ AG++ T Y T EPC
Sbjct: 60 KLAGKKYSKEFLWETTLYTTAEPCCMC 86
>gi|312136100|ref|YP_004003438.1| cmp/dcmp deaminase zinc-binding protein [Caldicellulosiruptor
owensensis OL]
gi|311776151|gb|ADQ05638.1| CMP/dCMP deaminase zinc-binding protein [Caldicellulosiruptor
owensensis OL]
Length = 143
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
VA +VKDG +I + HAE+ A+ +A ++ R +VT EPC
Sbjct: 21 PVAAAVVKDGKIISIKRNDSKKAIYHAEILAIIDATSKLSTKDLRSCEMFVTKEPCPMC 79
>gi|163790315|ref|ZP_02184747.1| comE operon protein 2, putative [Carnobacterium sp. AT7]
gi|159874386|gb|EDP68458.1| comE operon protein 2, putative [Carnobacterium sp. AT7]
Length = 171
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 25/103 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+D FMS + + T T +V IV++ +I G
Sbjct: 6 PWDQYFMS---QSLLLSLRSTCTRLTVGATIVREKRIIAGGYNGSVSGDVHCIDEGCYVV 62
Query: 54 --------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE+ A+ + G + +GA YVT PC +
Sbjct: 63 DGHCLRTIHAEMNAILQCAKFGAQTQGAEIYVTHFPCLQCTKM 105
>gi|304411509|ref|ZP_07393122.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS183]
gi|307306715|ref|ZP_07586457.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
BA175]
gi|304350036|gb|EFM14441.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
OS183]
gi|306910683|gb|EFN41112.1| bifunctional deaminase-reductase domain protein [Shewanella baltica
BA175]
Length = 183
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L RG L ++GG + F+ + L+ + L R ++G+ GIP
Sbjct: 101 ISEQLKTRGFKHLYIDGGQTIQG-FLAAGLIQELTLTRIPTLLGK-GIPLF-GNLAQALQ 157
Query: 338 FMCVRRDYFGS 348
M + + +
Sbjct: 158 LMPIHTQQYDN 168
>gi|297160962|gb|ADI10674.1| hypothetical protein SBI_07554 [Streptomyces bingchenggensis BCW-1]
Length = 197
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
LLV G + + ++ L D ++L R +++G G P++ + V G+
Sbjct: 128 DLLVMGSPTLVRTLLHEGLFDELLLMRMPVILGGGKTIFPVDGAL--RTLELVSTATGGT 185
Query: 349 DVCL-EYIG 356
V + Y
Sbjct: 186 GVQVCTYRP 194
>gi|116625310|ref|YP_827466.1| deaminase-reductase domain-containing protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116228472|gb|ABJ87181.1| bifunctional deaminase-reductase domain protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 186
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
G +A I + L+D L ++G G P G + + V L
Sbjct: 124 AGPTLAAHAIRAGLIDEYRLLVVPTILGGGTRVVP---GGVRIRLDLREERRLANGMVYL 180
Query: 353 EY 354
Y
Sbjct: 181 RY 182
>gi|116669980|ref|YP_830913.1| CMP/dCMP deaminase, zinc-binding [Arthrobacter sp. FB24]
gi|116610089|gb|ABK02813.1| CMP/dCMP deaminase, zinc-binding protein [Arthrobacter sp. FB24]
Length = 161
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 2 PVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56
P S+ D +F+ A+ + +V L+V GV HAE
Sbjct: 4 PPSAADIQKFLGQAVDLAVQNVAAGGG--PFGALVVTADGTRHFGVNRVTRDNDPTAHAE 61
Query: 57 VQALE-----EAGEEARGATAYVTLEPCSHY 82
V A+ A + GA Y + EPC
Sbjct: 62 VVAIRTAAAESANFDLSGAVLYASCEPCPLC 92
>gi|317969787|ref|ZP_07971177.1| tRNA-specific adenosine deaminase [Synechococcus sp. CB0205]
Length = 182
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC----PHAEVQALE 61
+M LR + VG P VA +++ G +G GV HAE+ ALE
Sbjct: 18 HELWMRRLLRRAE-AVGEKGEIP-VAAVLLDGHGRALGWGVNRRQREQRPLGHAELMALE 75
Query: 62 EAGE-----EARGATAYVTLEPCSHY 82
+A + VTLEPC
Sbjct: 76 QAARLRGDWRFNDCSLIVTLEPCPMC 101
>gi|183982856|ref|YP_001851147.1| hypothetical protein MMAR_2852 [Mycobacterium marinum M]
gi|183176182|gb|ACC41292.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 186
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L TI G + V GG +A F+++ +D I L + + + G P
Sbjct: 105 VLPTIEEAAGAGDIWVVGGGDLAGQFLDAGALDEIRLSVAPVALAGGAPLLP--RCIGAD 162
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
V G L Y
Sbjct: 163 RLRLVSAAAHGQFARLVYTV 182
>gi|331270444|ref|YP_004396936.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
BKT015925]
gi|329126994|gb|AEB76939.1| CMP/dCMP deaminase, zinc-binding protein [Clostridium botulinum
BKT015925]
Length = 162
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 33/107 (30%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++ T + +IVK+ +I G T + G
Sbjct: 1 MERIDKHNYYLDICQTILERG---TCLRRNFGAIIVKNDEIISSGYTGSPRGRKNCCDLG 57
Query: 54 ---------------------HAEVQALEEAGEE--ARGATAYVTLE 77
HAE A+ A + GA V E
Sbjct: 58 ICRREELKVERGTRYELCRSVHAEQNAIISARRQDMLDGALYLVGKE 104
>gi|302671281|ref|YP_003831241.1| CMP/dCMP deaminase zinc-binding domain-containing protein
[Butyrivibrio proteoclasticus B316]
gi|302395754|gb|ADL34659.1| CMP/dCMP deaminase zinc-binding domain-containing protein
[Butyrivibrio proteoclasticus B316]
Length = 172
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 19/93 (20%)
Query: 3 VSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPH 54
+ D +M + + ++V DG ++ H
Sbjct: 1 MGEIDENYMKRCYELAISAGKKGFDT------FGAVLVCDGKILEEAENTADFEKKIFGH 54
Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
AE + + + + Y + PC
Sbjct: 55 AEFNLVHKCANKYTDDILEKSVVYTSCAPCERC 87
>gi|154499104|ref|ZP_02037482.1| hypothetical protein BACCAP_03096 [Bacteroides capillosus ATCC
29799]
gi|150271944|gb|EDM99170.1| hypothetical protein BACCAP_03096 [Bacteroides capillosus ATCC
29799]
Length = 184
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 41/167 (24%), Gaps = 33/167 (19%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------- 53
+ ++ A + L +IV++ +I G G
Sbjct: 19 KRIDKENYYLDIAETVAERATCLRRCY---GAIIVRNDEIIATGYNGAPRGRRNCVDLNY 75
Query: 54 --------------------HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFI 92
HAE A+ A GAT Y+ + G +
Sbjct: 76 CTREALNIPSGERYELCRSVHAEANAIISAARSETLGATLYMACK-NPATGELIAGSTSC 134
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139
C + + +R + + + + + + +
Sbjct: 135 AMCRRLIINAGIQRVVIRNTKTDYSVVHVEDWVREDDSLPQERCSCC 181
>gi|149182757|ref|ZP_01861221.1| ComEB [Bacillus sp. SG-1]
gi|148849523|gb|EDL63709.1| ComEB [Bacillus sp. SG-1]
Length = 175
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG------------------ 51
M+ + + T T +V IV+D +I G + G
Sbjct: 1 MAQSHLLALRS---TCTRLTVGATIVRDKRIIAGGYNGSIAGGVHCIDEGCYVIDNHCVR 57
Query: 52 CPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ A+ + G GA YVT PC
Sbjct: 58 TIHAEMNAIIQCAKFGVPTAGAEIYVTHFPCLQC 91
>gi|319784273|ref|YP_004143749.1| CMP/dCMP deaminase zinc-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170161|gb|ADV13699.1| CMP/dCMP deaminase zinc-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 149
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V +I V+ HAE+ + EA E G YVTLEPC+
Sbjct: 24 PVGAVIANGAGVVASAGNRTRELADPTAHAEMLVIREACRKLSAERLTGHDLYVTLEPCA 83
Query: 81 HY 82
Sbjct: 84 MC 85
>gi|323144479|ref|ZP_08079081.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Succinatimonas hippei YIT 12066]
gi|322415757|gb|EFY06489.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Succinatimonas hippei YIT 12066]
Length = 170
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 33/123 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA--------------- 48
S D FM A S T +IV KDG ++ G
Sbjct: 9 SKDESFMEIAQAVSMRS---TCIRRRYGAVIVSKDGRIVATGYNGAPRHRANCSDLKSCL 65
Query: 49 ------YGGCP-------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIE 94
G HAE A+ + G T Y+ + + +
Sbjct: 66 RAELKIKPGTHYELCRAVHAEANAIINGNPLDIVGGTLYLAGTDAATNKPTAQMRPCAMC 125
Query: 95 CGI 97
+
Sbjct: 126 ERL 128
>gi|260436582|ref|ZP_05790552.1| riboflavin biosynthesis protein RibD C- domain protein
[Synechococcus sp. WH 8109]
gi|260414456|gb|EEX07752.1| riboflavin biosynthesis protein RibD C- domain protein
[Synechococcus sp. WH 8109]
Length = 225
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 74/232 (31%), Gaps = 27/232 (11%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
L R R + L +A+S D + G+ + G + + A DA L+G GT+
Sbjct: 1 MLQRPTPSRPFVRLVLAISLDGRLAPPVGGAAQLGGEGDRRALEHALAWGDACLIGAGTL 60
Query: 201 LADDPEL--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252
A R + + P +++ S + L ++ D
Sbjct: 61 RAHQCTCLIRSPQLLERRRSEGRAEQPAAVVVSRSPDFSSAWRFFDQPLQRWLLAPEPVD 120
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+ + + L +L G+ L++ GGA ++ + + VD++
Sbjct: 121 Q----------GFDRWFPLAPTWPERLKVLGAAGIQRLVLLGGAQLSADLLQADCVDALQ 170
Query: 313 LYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIG 356
L ++G P P + + G + + Y
Sbjct: 171 LTLVPQLLGGRFCWLPCTDAPLP-AALAQPGAWQSDGAEDLGDGEWLVRYRR 221
>gi|293377500|ref|ZP_06623696.1| ComE operon protein 2 [Enterococcus faecium PC4.1]
gi|292643869|gb|EFF61983.1| ComE operon protein 2 [Enterococcus faecium PC4.1]
Length = 148
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 25/94 (26%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53
M+ A+ S V +V++ +I G
Sbjct: 1 MAQAVLLSLRSTCTRLE---VGATLVREKRIIAGGYNGAVSGDVHCIDEGCYIVDGHCLR 57
Query: 54 --HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE+ AL + G G+ YVT PC
Sbjct: 58 TIHAEMNALLQCAKLGIPTEGSEIYVTHFPCLAC 91
>gi|284161514|ref|YP_003400137.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus profundus
DSM 5631]
gi|284011511|gb|ADB57464.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus profundus
DSM 5631]
Length = 563
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCPH 54
M AL ++ L V +I+KD ++ G G H
Sbjct: 1 MELALVVAKRSTCLRQK---VGAIIIKDKRILATGYNGAPSGMAH 42
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
HAE A+ +A G GAT Y T PC +
Sbjct: 486 HAEQNAIIQAAKFGICIDGATMYTTHCPCITCAKM 520
>gi|254518952|ref|ZP_05131008.1| cytidine/deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
gi|226912701|gb|EEH97902.1| cytidine/deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA]
Length = 160
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI-----GRGVTAYGGCPHAE 56
+ ++ + S+ S N C++V KDG +I G T Y HAE
Sbjct: 1 MYKDHIYYLRKCVEVSKRSRE--SGNMPFGCILVDKDGNIILEQMNIEG-TDYKCTGHAE 57
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
Q +E+A + T Y T EPC+
Sbjct: 58 TQLMEKASMKYSKSFLWDCTLYSTAEPCAMC 88
>gi|328883492|emb|CCA56731.1| Dihydrofolate reductase [Streptomyces venezuelae ATCC 10712]
Length = 180
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L+ L RGV + +GG + SFI + VD I+ + ++IG G +
Sbjct: 98 LVADLDERGVKHVYPDGG-RLIQSFIRAGRVDRFIISVAPVLIGAGHRLFGDLPHDIPLR 156
Query: 338 FMCVR 342
V
Sbjct: 157 LDSVS 161
>gi|319401871|ref|NP_001187388.1| tRNA-specific adenosine deaminase-like protein 3 [Ictalurus
punctatus]
gi|308322883|gb|ADO28579.1| tRNA-specific adenosine deaminase-like protein 3 [Ictalurus
punctatus]
Length = 353
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 15/159 (9%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV--TAYGGCPHAEVQALEEA 63
+M+ A+ +R +V +IV K G +I G T HA + ++
Sbjct: 179 QEYMTTAVEAARSGREEGMD--AVGAVIVDPKSGQIIAVGHDLTQDHPLHHAVMVCIDLV 236
Query: 64 GEEARG---------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
G A Y +P + G S +
Sbjct: 237 AWAQGGGVYTYEKHPACRYTASDPQLYAGHSETSGSEENVQPYICTGYELYVTREPCVMC 296
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153
+ + + V S Y ++ +H
Sbjct: 297 AMALVHSRISSVFYGTASPDGALGTKYKIHCQKELNHHF 335
>gi|255658905|ref|ZP_05404314.1| cytidine/deoxycytidylate deaminase family protein [Mitsuokella
multacida DSM 20544]
gi|260848854|gb|EEX68861.1| cytidine/deoxycytidylate deaminase family protein [Mitsuokella
multacida DSM 20544]
Length = 153
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 26/97 (26%), Gaps = 32/97 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV--------------------- 46
F+ A R T +IVKD I+I G
Sbjct: 12 EYFLDIAKAVGRRA---TCLRRRYGAIIVKDKIIISTGYNGAPRGEANCIDTGNCERERL 68
Query: 47 TAYGGCP-------HAEVQALEEA-GEEARGATAYVT 75
G HAE A+ A GAT Y+
Sbjct: 69 HVPKGQNYELCVAVHAEQNAIINADSAAMEGATIYIV 105
>gi|297190424|ref|ZP_06907822.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197720447|gb|EDY64355.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 187
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 2/117 (1%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + A + + V++ + + DL ++ L + +
Sbjct: 60 PTWAAGPEGEDQASIDKMNNTPKVVVSNTLTESPWDNAVVAGGDLAAIVDKLKEQPGGDI 119
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ GG + S I L+D + L + IG G + V F
Sbjct: 120 IAYGGGTLVSSLIAEGLLDELHLLVNPTAIGAG--MPVFPALGKNQPLRLVAARQFD 174
>gi|73662644|ref|YP_301425.1| dihydrofolate reductase family protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72495159|dbj|BAE18480.1| putative dihydrofolate reductase family [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 185
Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
R D + D + L +I ++N + +
Sbjct: 51 RKSYDLWGSYTPDDEQENDDQLMWQLIHSKNKYVFTNQTRSNHDQTQFIKPKDMYTTVND 110
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
I + + + GG+ + SFI L+D L +V+G G E + + N
Sbjct: 111 IKTQQQ-KDIWLYGGSELITSFIKHDLIDEYRLSIHPVVLGTG--KPLFENIHKQLNLSH 167
Query: 341 VRRDYFGSDVC-LEYIGK 357
V+ + F S V L Y
Sbjct: 168 VQTNTFKSGVVQLIYSKD 185
>gi|306831164|ref|ZP_07464325.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304426730|gb|EFM29841.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 226
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 6/127 (4%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ L D + I + + + V+ L V GG
Sbjct: 101 YEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLARAMEILTEEFAVSRLAVVGGG 160
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
+ F+ + L+D I L + G G+ S + +E V+ G+ +
Sbjct: 161 HINEGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSMETEPTAVTLKEVKTYPDGA-IW 219
Query: 352 LEYIGKN 358
L Y +N
Sbjct: 220 LRYTPEN 226
>gi|261406959|ref|YP_003243200.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261283422|gb|ACX65393.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 178
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-DVCL 352
G +AHS LVD LY +V+G G P V D G + L
Sbjct: 118 AGPELAHSLTELGLVDEYRLYLHPVVLGH-GKPFFAGPR---PPLRLVASDRIGEKVIRL 173
Query: 353 EYIG 356
Y+
Sbjct: 174 TYVP 177
>gi|325971024|ref|YP_004247215.1| CMP/dCMP deaminase zinc-binding protein [Spirochaeta sp. Buddy]
gi|324026262|gb|ADY13021.1| CMP/dCMP deaminase zinc-binding protein [Spirochaeta sp. Buddy]
Length = 156
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 6 FDAR-FMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAE 56
D R ++ A+ +R + P L+V V+G + HAE
Sbjct: 1 MDERTYLIQAVEKARETMLQNLGGP-FGALLVDTQGQVFVASNTVLG----SNDPTAHAE 55
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
V + + + + +G Y T PC
Sbjct: 56 VNVIRQVCKQKGTHDLQGCILYTTCYPCPMC 86
>gi|300694443|ref|YP_003750416.1| bifunctional deaminase-reductase-like [Ralstonia solanacearum
PSI07]
gi|299076480|emb|CBJ35798.1| Bifunctional deaminase-reductase-like [Ralstonia solanacearum
PSI07]
Length = 220
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 29/121 (23%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + G + K + V +
Sbjct: 62 DFAARGFQNVGAWILGRNMFGPIRGDWPDTNWKGWWGDNPPYHVPVFILTHHARPPIEME 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + + L + + GG ++ L+D + + + +++G
Sbjct: 122 GDTTFHFITGGIREALDRAREAAAGMDVRIGGGPDTIQQYLREGLIDELHIAIAPVLLGR 181
Query: 323 G 323
G
Sbjct: 182 G 182
>gi|282855760|ref|ZP_06265066.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
gi|282586392|gb|EFB91654.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
Length = 230
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 13/155 (8%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R + + + + IV + N I
Sbjct: 77 RRYPEGTIICVAFDRWGKLRWK---NNVMDCAGRRMPIVEAVTEKCAPEFLAYLNDLQIP 133
Query: 270 CDCRDLKKLLTILVGRGVTSLL-VE-----GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L L + + SL VE GG+ + FI L D I + + V G
Sbjct: 134 YIVAGRDDLDLELFLQKIKSLCGVETFVIGGGSQINGEFIRRGLADEISIVVAPAVDGTR 193
Query: 324 GIPSPLEEG---YLEKNFMCVRRDYFGSD-VCLEY 354
G + + + D + + +
Sbjct: 194 GALTIAGTDDLTGFPQYYRLKDVRKLPCDGLLIRW 228
>gi|163745323|ref|ZP_02152683.1| CMP/dCMP deaminase, zinc-binding protein [Oceanibulbus indolifex
HEL-45]
gi|161382141|gb|EDQ06550.1| CMP/dCMP deaminase, zinc-binding protein [Oceanibulbus indolifex
HEL-45]
Length = 153
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP--------- 53
++DARF+ A S W V +IV D + G G
Sbjct: 6 TWDARFLQLAETISSWSEDRDFH---VGAVIVGPDHEICATGYNGLPRGVASVDPARFDR 62
Query: 54 ----------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
HAE A+ A G G T Y+ PC+
Sbjct: 63 ASGEKFYWFEHAERNAIYNAARIGVPLIGCTIYINRFPCADC 104
>gi|197123715|ref|YP_002135666.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
gi|196173564|gb|ACG74537.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
Length = 182
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 41/159 (25%), Gaps = 7/159 (4%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ + + + P ++ + +
Sbjct: 30 YWTRRMDAAGAMLFGRRTYELMEDAWPQVARDPKARPADRTWARKLEAKPKYVVSTTRRD 89
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
F N +++ D K L RG+ LV G ++ + LVD L +V
Sbjct: 90 FPWSNTHLVEGDLTRAVKALKKATPRGI---LV-GSPQLSAALQRLGLVDEYRLVVHPVV 145
Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
G G P V S + L Y +
Sbjct: 146 AGHG--PYLFTGLQPSLRLKLVSARRLKSGIVTLHYRRR 182
>gi|315645943|ref|ZP_07899064.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
gi|315278704|gb|EFU42018.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453]
Length = 172
Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 30/117 (25%), Gaps = 39/117 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D FM A S V ++V+ ++G G P
Sbjct: 8 DWDTYFMDIAFMVSTRSQC---PRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMIA 64
Query: 54 ------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE L + G+T YVT EPC
Sbjct: 65 EDYELVVQDGQERMVKKQRCIRTIHAEQNLLLFTDRIDREGSTVYVTDEPCWTCANM 121
>gi|329924153|ref|ZP_08279370.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paenibacillus sp. HGF5]
gi|328940838|gb|EGG37149.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Paenibacillus sp. HGF5]
Length = 172
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 30/117 (25%), Gaps = 39/117 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D FM A S V ++V+ ++G G P
Sbjct: 8 DWDTYFMDIAFMVSTRSQC---PRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMIA 64
Query: 54 ------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE L + G+T YVT EPC
Sbjct: 65 EDYELVVQDGKESMVKKQRCIRTIHAEQNLLLFTDRIDREGSTVYVTDEPCWTCANM 121
>gi|148242392|ref|YP_001227549.1| tRNA-specific adenosine deaminase [Synechococcus sp. RCC307]
gi|147850702|emb|CAK28196.1| tRNA-specific adenosine deaminase [Synechococcus sp. RCC307]
Length = 183
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
+M LR + G VA +++ G IG G HAE+ AL +
Sbjct: 27 WMDRLLRLAAKAGQRGEV----PVAAVVIDPLGRAIGWGSNRREAAQDPLGHAELVALRQ 82
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A T VTLEPC
Sbjct: 83 ASSLRRDWRFNQHTLLVTLEPCPMC 107
>gi|167752602|ref|ZP_02424729.1| hypothetical protein ALIPUT_00856 [Alistipes putredinis DSM 17216]
gi|167659671|gb|EDS03801.1| hypothetical protein ALIPUT_00856 [Alistipes putredinis DSM 17216]
Length = 197
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 73 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDILVV 132
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+D + +Y ++ G+G + + V
Sbjct: 133 GGGKLLTSLIKAGLLDILTIYTVPVMAGKG---IGFIGETFGSRWKLSESRVLDNGVV 187
>gi|295694775|ref|YP_003588013.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
gi|295410377|gb|ADG04869.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912]
Length = 172
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 31/117 (26%), Gaps = 36/117 (30%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGG--------- 51
S+D FM A + T V ++V+D ++G G
Sbjct: 8 SRKSWDFYFMDIAYMAATRA---TCPRRQVGAVLVQDRKLMGSAYNGAPAGVTDCYEGGC 64
Query: 52 ----------------------CPHAEVQALEEAGEEAR-GATAYVTLEPCSHYGRS 85
HAE + R G+T YVT PC
Sbjct: 65 LLVDVYEKNAAGEIVQKQHCIRTIHAEQNLILFTDRAQRLGSTVYVTDSPCWTCANM 121
>gi|224367992|ref|YP_002602155.1| FolA [Desulfobacterium autotrophicum HRM2]
gi|223690708|gb|ACN13991.1| FolA [Desulfobacterium autotrophicum HRM2]
Length = 167
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+ +L L G + + + GG + F + L+D I + I G G L
Sbjct: 80 FTDQPPDLILKGLDREGFSEVALIGGTQINSLFAQANLIDEIFVTVVPIFFGRG---LSL 136
Query: 330 EEGYLEKNFMCVRRDYF-GSDVCLEYIGKN 358
+ ++ + + + L Y K
Sbjct: 137 FDCEMDNQLELLGTEIISDQSLVLRYRVKK 166
>gi|330467680|ref|YP_004405423.1| hypothetical protein VAB18032_18605 [Verrucosispora maris
AB-18-032]
gi|328810651|gb|AEB44823.1| hypothetical protein VAB18032_18605 [Verrucosispora maris
AB-18-032]
Length = 185
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LV G A +A + LVD L +++G G +G ++ V +G+
Sbjct: 117 ILVHGSATLAQGLAAAGLVDRYHLLIFPLLLGG-GRRLFAPDGADKQQLTLVEHATYGNG 175
Query: 350 VCL 352
V L
Sbjct: 176 VQL 178
>gi|254823485|ref|ZP_05228486.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium
intracellulare ATCC 13950]
Length = 143
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 19/147 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY--GGCP--HAEVQALEEAG 64
+ A +R + + + DG+++GRG G P HAEV A AG
Sbjct: 1 MLDVAFEEARSGLAEGGI--PIGAALFTADGVLLGRGRNRRVQQGDPSLHAEVDAFRAAG 58
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ R TL PC + C+ + + I +VV + R G +WL+Q
Sbjct: 59 RQRDYRSTVMVTTLSPCWY------CSGLVRQFNIGALVVG----ESRTFTGGHEWLAQH 108
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR 149
G+ V + + + A++ E
Sbjct: 109 GVTVTVVDDPRCTQMMSAFIAEHPELW 135
>gi|304405069|ref|ZP_07386729.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345948|gb|EFM11782.1| bifunctional deaminase-reductase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 191
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 5/136 (3%)
Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
+ M P + + + + N ++ +
Sbjct: 50 WGRGTYQMMHSYWPSVPSDPAASHHERDHAEWIEKTAKIVFSTTLEKVEWNNSRLVKENI 109
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
+ K L G+ + L G +AH + L+D + S +++G G+P +
Sbjct: 110 EEEIKHLKQQSGKDIVIL---GSPRLAHYLMQLDLIDEYKMTVSPVLLGS-GLPLF-QGL 164
Query: 333 YLEKNFMCVRRDYFGS 348
+ N + F S
Sbjct: 165 KEKINLKLIENKTFDS 180
>gi|238854305|ref|ZP_04644649.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
202-4]
gi|282851977|ref|ZP_06261335.1| conserved domain protein [Lactobacillus gasseri 224-1]
gi|311110735|ref|ZP_07712132.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase
II [Lactobacillus gasseri MV-22]
gi|238833116|gb|EEQ25409.1| riboflavin biosynthesis protein ribBA [Lactobacillus gasseri
202-4]
gi|282556737|gb|EFB62341.1| conserved domain protein [Lactobacillus gasseri 224-1]
gi|311065889|gb|EFQ46229.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase
II [Lactobacillus gasseri MV-22]
Length = 92
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV 41
D +M+ AL+ ++ T V +I K+ +
Sbjct: 2 EKDQYYMNLALQEAKKGRFQT----LVGAVIFKELKI 34
>gi|328885360|emb|CCA58599.1| Bifunctional deaminase-reductase domain protein [Streptomyces
venezuelae ATCC 10712]
Length = 215
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 45/180 (25%)
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ + + G L D N E
Sbjct: 36 EMFSWAGATASWPNRTAPGGSRGLDDYFTRDFSHNIGAEIMGRNKFGPQRGPWQDHEWQG 95
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +F + + D + L + + GGA
Sbjct: 96 WWGDEPPFHTPVFVMTHHPRPSFTLSDTTFHFVDADPAEVLARAKEEAKGKDVRLGGGAT 155
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
V F+++ LVD++ + + + +G G + L++ + G Y +
Sbjct: 156 VIREFLDAGLVDTLHVAVAPVKLGAGVRLWESPDELLDRYHRDIVPSPSGKVTHHIYWRR 215
>gi|91786197|ref|YP_547149.1| bifunctional deaminase-reductase-like protein [Polaromonas sp.
JS666]
gi|91695422|gb|ABE42251.1| bifunctional deaminase-reductase-like protein [Polaromonas sp.
JS666]
Length = 178
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L + V + V+GG + SF+ L++ +++ ++IG G P + +
Sbjct: 102 EELTRQNVHRVYVDGG-RLVQSFLRDGLINDMVITTVPVLIGS-GRPLF-GPLPQDIDLA 158
Query: 340 CVRRDYF 346
V F
Sbjct: 159 LVSSRSF 165
>gi|323464890|gb|ADX77043.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 219
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T + I K + G + + G + + + + L
Sbjct: 105 ATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTDSGGGLTNKLLENGL 164
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFG-SDVCLEYIGKN 358
+D I L S +G EK N + + L Y KN
Sbjct: 165 IDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSLRYAVKN 217
>gi|296449276|ref|ZP_06891061.1| riboflavin biosynthesis protein RibD domain protein [Clostridium
difficile NAP08]
gi|296261875|gb|EFH08685.1| riboflavin biosynthesis protein RibD domain protein [Clostridium
difficile NAP08]
Length = 231
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T + I K + G + + G + + + + L
Sbjct: 117 ATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTDSGGGLTNKLLENGL 176
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFG-SDVCLEYIGKN 358
+D I L S +G EK N + + L Y KN
Sbjct: 177 IDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSLRYAVKN 229
>gi|145294893|ref|YP_001137714.1| hypothetical protein cgR_0840 [Corynebacterium glutamicum R]
gi|140844813|dbj|BAF53812.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 186
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + + GG +A F ++ +D IIL + + + + G P+ + V G
Sbjct: 119 TDIWIVGGGDLAGQFFDAGALDRIILTMAPVFL-DEGQPA-MPCRIESDRLRTVNVREVG 176
Query: 348 S 348
Sbjct: 177 Q 177
>gi|152966620|ref|YP_001362404.1| DNA-binding protein [Kineococcus radiotolerans SRS30216]
gi|151361137|gb|ABS04140.1| DNA-binding protein [Kineococcus radiotolerans SRS30216]
Length = 214
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 33/123 (26%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + E + P +F
Sbjct: 61 DHLARAFHHDIGAEIMGRNKFSPHRGPWTDHRWRGWWGEEPPFHTPVFVLTHHPRPSFTL 120
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + + L G + + GGA +F+++ L+D++ + + + +G
Sbjct: 121 ADTTFHFVQGSPAEVLGQARASAGGKDVRLGGGAQTIRAFLDADLIDTLHVVVAPLELGS 180
Query: 323 GGI 325
G
Sbjct: 181 GTR 183
>gi|288905088|ref|YP_003430310.1| hypothetical protein GALLO_0887 [Streptococcus gallolyticus UCN34]
gi|288731814|emb|CBI13379.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
Length = 226
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 4/126 (3%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ L D + I + + + V+ L V GG
Sbjct: 101 YEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLARAMEILTEEFAVSRLAVVGGG 160
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--D--VCL 352
+ F+ + L+D I L + G G+ S + +E V + D + L
Sbjct: 161 HINAGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSMETEPTAVALKEVKNYPDGAIWL 220
Query: 353 EYIGKN 358
Y +N
Sbjct: 221 RYTPEN 226
>gi|78213851|ref|YP_382630.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9605]
gi|78198310|gb|ABB36075.1| putative riboflavin-specific deaminase [Synechococcus sp. CC9605]
Length = 230
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 19/233 (8%)
Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195
+ R R + L +A+S D + G+ + G + + A DA L+
Sbjct: 1 MPQCPTSLRPTPTRPFVRLVLAISLDGRLAPPEGGAAQLGGEGDRRALEHALAWGDACLI 60
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G GT+ A R L E + + ++ + D P+
Sbjct: 61 GAGTLRAHQCTCLIRNPQLLEQ------RRSEGRTEQPAAVVVSRSPEFSSTWRFFDQPL 114
Query: 256 LAL----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
+ + + + L +L G+ L++ GGA ++ + + VD++
Sbjct: 115 QRWLLAPDPVDQGFDRWFPLAPTWPERLEVLGAAGIQRLVLLGGARLSADLLQADCVDAL 174
Query: 312 ILYRSQIVIGE-------GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIG 356
L ++G +P P + + G ++ + Y
Sbjct: 175 QLTLVPQLLGGCFSWLPCTDVPLP-AVLAQPGAWQSDGAEDLGDGELLVRYQR 226
>gi|302559168|ref|ZP_07311510.1| cytosine deaminase [Streptomyces griseoflavus Tu4000]
gi|302476786|gb|EFL39879.1| cytosine deaminase [Streptomyces griseoflavus Tu4000]
Length = 152
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
+++ AL +R + + DG ++GRG HAE A
Sbjct: 10 RAWLATALAEARAGGDEGGI--PIGAALYGADGTLLGRGHNRRVQDGDPSAHAETAAFRA 67
Query: 63 AGEEAR--GATAYVTLEPCSHYG 83
AG + G T TL PC +
Sbjct: 68 AGRQRSYGGTTMVTTLSPCWYCS 90
>gi|255075667|ref|XP_002501508.1| cytidine/deoxycytidylate deaminase family protein [Micromonas sp.
RCC299]
gi|226516772|gb|ACO62766.1| cytidine/deoxycytidylate deaminase family protein [Micromonas sp.
RCC299]
Length = 164
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 30 SVACLIVK--DGIVIGRGVT-----AYGGCPHAEVQALEEAGE------EARGATAYVTL 76
V ++V G V+ HAE++ + + + R AT YVTL
Sbjct: 18 PVGAVLVHTASGKVLSS-HHNTVLAQDDPTAHAEMKCVRDGAKVLGGWRYLRDATLYVTL 76
Query: 77 EPCSHY 82
EPC
Sbjct: 77 EPCPMC 82
>gi|297200534|ref|ZP_06917931.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|197709659|gb|EDY53693.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 215
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 36/148 (24%)
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ + S+ G D + G +
Sbjct: 37 WGDDLHRWFMSASEEAAAGKSGTDVDYFVRGDQNIGATIMGRNMFGPQRGPWEDESWQGW 96
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
V + + + D L + + GGAA
Sbjct: 97 WGENPPYHHDVFVHTHHLRPDLEMAGGTTFHFTDEPPETVLQRAFDAADGKDVRIGGGAA 156
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
V ++ + L+D + L + ++IG G
Sbjct: 157 VIRQYLRAGLIDELHLAIAPLLIGRGER 184
>gi|302869363|ref|YP_003838000.1| CMP/dCMP deaminase [Micromonospora aurantiaca ATCC 27029]
gi|302572222|gb|ADL48424.1| CMP/dCMP deaminase zinc-binding [Micromonospora aurantiaca ATCC
27029]
Length = 141
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNP----SVAC----LIVKDGIVIGRGVTAYGGCPH 54
++ D F+ A+ + G + P V LI V+ H
Sbjct: 1 MTPDDEAFLRRAVELADRA-GASGERPFASLLVGADGTVLIEDHNTVVS----DKDVTAH 55
Query: 55 AEV-----QALEEAGEEARGATAYVTLEPCSHYGRSPPC 88
E+ A + A E A T + + +PC +
Sbjct: 56 PELKLARWAARQLAPEAAVATTMFTSCQPCPMCTVAINA 94
>gi|253699654|ref|YP_003020843.1| bifunctional deaminase-reductase domain protein [Geobacter sp. M21]
gi|251774504|gb|ACT17085.1| bifunctional deaminase-reductase domain protein [Geobacter sp. M21]
Length = 186
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ + + G ++ V GG +A F ++ L+D +I+ + +G G P L
Sbjct: 104 RQVHDDMRLAAGAKNIWVVGGGDLAGQFYDAGLLDELIIQIGSVTLGRGKQLFP--RRVL 161
Query: 335 EKNFMCVRRDYFG 347
G
Sbjct: 162 SPILRLSSVRQMG 174
>gi|115376009|ref|ZP_01463256.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|310824279|ref|YP_003956637.1| bifunctional deaminase-reductase domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|115367008|gb|EAU65996.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|309397351|gb|ADO74810.1| Bifunctional deaminase-reductase domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 192
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L + GG + F+ L+D I+L +V+G G PL L + F
Sbjct: 117 KNLWLIGGGNLVAQFVRQGLLDEILLSVVPVVLGGG---IPLLPAALTRPLELTGLTRFD 173
>gi|323450336|gb|EGB06218.1| hypothetical protein AURANDRAFT_16078 [Aureococcus
anophagefferens]
Length = 96
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP----HAEVQALE 61
D ++ A +R C +V+DG V+ + G HAE A+
Sbjct: 3 DENYLDLAYLLARNSEAKDGHM---GCCVVRDGAVVATTINCGLFGDARSDVHAEAAAVS 59
Query: 62 EA---GEEARGATAYVTLEPCSHY 82
+ G GA+ YVT PC
Sbjct: 60 DCARRGVPLGGASIYVTRAPCPRC 83
>gi|229489329|ref|ZP_04383192.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229323426|gb|EEN89184.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 190
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LV G + H+ + + LVD + L +++G GG P E + + S
Sbjct: 122 ILVAGSRTLVHALLLAGLVDELRLMVFPVILGSGGRVFP--ESADKIVLELKDDRRYESG 179
Query: 350 V-CLEYIG 356
V L Y
Sbjct: 180 VQVLTYHP 187
>gi|156937747|ref|YP_001435543.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Ignicoccus hospitalis KIN4/I]
gi|156566731|gb|ABU82136.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase
[Ignicoccus hospitalis KIN4/I]
Length = 221
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 15/220 (6%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+ + S D I S ++ +H R SD +LVG T DDP L
Sbjct: 1 MIEVVIFSTASLDGRIATKSGDSK-LSCENDLRLLHKWRCWSDLVLVGANTAKTDDPGLF 59
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI--- 265
+ + P+R ++D + D ++ + +++ T ++
Sbjct: 60 VKRVPC-KRQPLRGVVDGRLSVPHDLRLFREWPWTSLVVTTVEGIRNNEWKYKYFKSLGV 118
Query: 266 ---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
D + L L +GV +LVEGG + S + V+++ + V+G
Sbjct: 119 EVLVAGKGPEVDWGRALEELGSKGVRKVLVEGGGRLNWSLLK--YVNTLEITYVGKVLGA 176
Query: 323 GGIPS---PLEEGYLEKNFM--CVRRDYFGSDVCLEYIGK 357
G E +F + G + + + K
Sbjct: 177 GTNLFEGEGFERVDESPDFEPSAAKFCECGRCIHVTWTRK 216
>gi|119714544|ref|YP_921509.1| tRNA-adenosine deaminase [Nocardioides sp. JS614]
gi|119535205|gb|ABL79822.1| tRNA-adenosine deaminase [Nocardioides sp. JS614]
Length = 143
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R + S + + +++ DG + RG HAEV AL A
Sbjct: 1 MRTALDEARAAL--ASGDVPIGAVVLDPDGTPVARGRNVREADHDPTGHAEVVALRAAAR 58
Query: 66 -----EARGATAYVTLEPCSHY 82
G T VTLEPC+
Sbjct: 59 ARGEWRLEGHTLVVTLEPCTMC 80
>gi|168211513|ref|ZP_02637138.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
perfringens B str. ATCC 3626]
gi|182625013|ref|ZP_02952791.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
perfringens D str. JGS1721]
gi|170710538|gb|EDT22720.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
perfringens B str. ATCC 3626]
gi|177909810|gb|EDT72228.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
perfringens D str. JGS1721]
Length = 175
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ + + + + +A + + + + ++ + ++ L G S+ + GG
Sbjct: 55 MGRNCYDQNMHKDFQGKEIYIASSEKIDDYKNYHFISGNICESISKLKNEG-KSIFLFGG 113
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ +F+ ++D ++ ++G+G ++ + + ++Y
Sbjct: 114 GILVDNFVKDDIIDEYVIGIIPTILGKGRKLFFENNPKIDLTLEYYSVE--DGVIVMKYS 171
Query: 356 GKN 358
+N
Sbjct: 172 KRN 174
>gi|148244449|ref|YP_001219143.1| deoxycytidylate deaminase [Candidatus Vesicomyosocius okutanii HA]
gi|146326276|dbj|BAF61419.1| deoxycytidylate deaminase [Candidatus Vesicomyosocius okutanii HA]
Length = 148
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 33/102 (32%)
Query: 5 SFDARFMSAALRFSRW-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--------- 53
+D R+ L ++ + V + V + V+ +G G P
Sbjct: 6 KWDKRY----LSLAKKVSTWSKDPSTQVGAVTVGRKKEVLSQGF---NGFPRGIHDTDER 58
Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCS 80
HAE+ A+ A G AT YV P
Sbjct: 59 YHDREIKYKFVVHAEMNAIYNATYSGTSLDRATLYVYGLPIC 100
>gi|3599408|gb|AAC62713.1| dCMP deaminase [Cenarchaeum symbiosum]
Length = 184
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 41/118 (34%)
Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTA--------------- 48
++D FM A ++ + V +IV+D + G
Sbjct: 16 TWDEYFMLQA-ELAKLRSNCIVRK---VGAVIVRDHRQLATGYNGTPPGVKNCYEGGCER 71
Query: 49 ---------YGGCP-------HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRS 85
G HAE A+ G GAT Y T PC +
Sbjct: 72 CAERIEGRIKSGEALDRCLCNHAEANAIMHCAILGIGAGGGGATMYTTFSPCLECTKM 129
>gi|227519358|ref|ZP_03949407.1| dihydrofolate reductase family protein [Enterococcus faecalis
TX0104]
gi|227073184|gb|EEI11147.1| dihydrofolate reductase family protein [Enterococcus faecalis
TX0104]
Length = 180
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L P + E+ + + + + D L+ + + + G
Sbjct: 57 YDQVTQELPPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRIKEEDGAGIWIVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 117 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMDQSIPVRLKQVYQKNELVYSIY 174
Query: 355 IGKN 358
+N
Sbjct: 175 QREN 178
>gi|257080766|ref|ZP_05575127.1| dihydrofolate reductase [Enterococcus faecalis E1Sol]
gi|256988796|gb|EEU76098.1| dihydrofolate reductase [Enterococcus faecalis E1Sol]
Length = 180
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 57 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTTSRTFTKEDPVTLIRRLKEEDGAGIWIVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 117 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 174
Query: 355 IGKN 358
+N
Sbjct: 175 QREN 178
>gi|134098685|ref|YP_001104346.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
gi|291003628|ref|ZP_06561601.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
gi|133911308|emb|CAM01421.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338]
Length = 156
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 30 SVACLIV-KDGIVIGRGVTAY--GGCP--HAEVQALEEAG--EEARGATAYVTLEPCSHY 82
+ +V +DG V+GRG G P H E A AG G T TL PC +
Sbjct: 31 PIGAALVGRDGEVLGRGHNRRVQDGDPSVHGETSAFRAAGRQRSYAGTTMVTTLSPCWYC 90
Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
R G WL++ G+ V
Sbjct: 91 SGLVRQFGISRVVIGEA----------RNFHGGHDWLAEHGVEV 124
>gi|292669195|ref|ZP_06602621.1| RibD domain protein [Selenomonas noxia ATCC 43541]
gi|292649036|gb|EFF67008.1| RibD domain protein [Selenomonas noxia ATCC 43541]
Length = 108
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ + V +L++ GG + SF+ L D I L + G +P+ +
Sbjct: 15 CALAMDKLFHLFHVRTLMLGGGGILNWSFLQEGLCDEISLVIAAAADGTAKMPALFSDAG 74
Query: 334 LEKNFMCVRRDYFG 347
+ G
Sbjct: 75 GFAENKALSLRLLG 88
>gi|289434763|ref|YP_003464635.1| zinc-binding, ComEB family dCMP deaminase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289171007|emb|CBH27549.1| zinc-binding, ComEB family dCMP deaminase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 176
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA- 63
T T V IV+D +I G + G HAE+ A+ +
Sbjct: 11 STCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCA 70
Query: 64 --GEEARGATAYVTLEPCSHY 82
G A YVT PC
Sbjct: 71 KFGATTDQAELYVTHFPCLAC 91
>gi|229916714|ref|YP_002885360.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
sp. AT1b]
gi|229468143|gb|ACQ69915.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
sp. AT1b]
Length = 197
Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 1/117 (0%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + + + + + L L
Sbjct: 61 GRKTYAQWASYWPNHDDIWPEANRAMKYVITRQSTDSRWESTTFLTEPVEALKRLKQEEG 120
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
L V G + H+ + + L+D + L I+IG G P + L + +
Sbjct: 121 PDLHVWGSGELVHTLLANNLIDEVRLIVYPIIIGSGKRLFP-DGNILPLQLDVIEQQ 176
>gi|283851075|ref|ZP_06368359.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
gi|283573471|gb|EFC21447.1| CMP/dCMP deaminase zinc-binding [Desulfovibrio sp. FW1012B]
Length = 181
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G V+ + HAE+ AL +A G+ VTLEPC
Sbjct: 47 PVGAVLLSGAGEVLAQTGNGPISRADPTAHAEILALRQAAARVGNYRLPGSILVVTLEPC 106
Query: 80 SHY 82
Sbjct: 107 LMC 109
>gi|329925352|ref|ZP_08280289.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
gi|328939904|gb|EGG36240.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
Length = 185
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
T + + + + +K + + + + L + + + GGA+
Sbjct: 64 HTDSEKEFWELVHSKEKYVFSRTQKGTDHKAIFINDRILEEVNKLKNKPGKDIWLYGGAS 123
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ +FIN LVD L +V+G G P + + N V F
Sbjct: 124 LITTFINLGLVDEYRLSVHPVVLG-EGKPLFV-DIKQRLNLKMVNTRTF 170
>gi|284991859|ref|YP_003410413.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065104|gb|ADB76042.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 188
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD- 349
+ GG + +F LVD LY + +VIG G E + V FG+
Sbjct: 121 MTLGGVDLVETFRRLDLVDQYRLYINPVVIGRGRR--LFETADDPTDLELVENRRFGNGV 178
Query: 350 VCLEYIGKN 358
V L Y +
Sbjct: 179 VLLRYTVRR 187
>gi|116250665|ref|YP_766503.1| nitrogen fixation symbiosis related protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115255313|emb|CAK06388.1| putative nitrogen fixation symbiosis related protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 151
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 33/94 (35%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG---------------RGVTAYGGCP 53
RFM AL + G P IG R
Sbjct: 5 RFMEMALEEA-RAAGERGEVP------------IGAVVVVDDIAVSRSGNRTRELKDVTA 51
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ A+ A E GA YVTLEPC+
Sbjct: 52 HAEIAAIRLACEALGQERLVGADLYVTLEPCTMC 85
>gi|315649543|ref|ZP_07902628.1| bifunctional deaminase-reductase domain protein [Paenibacillus
vortex V453]
gi|315275016|gb|EFU38391.1| bifunctional deaminase-reductase domain protein [Paenibacillus
vortex V453]
Length = 191
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 11/136 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + + P E + + + + + +L+
Sbjct: 47 TVIWGRGTYQMMHSYWPSVPSNPSASQHERNHAEWIEKTAKIVFSTTLEKVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + +L ++ G AH + L+D + S ++IG+ G+P +
Sbjct: 107 EDVEEEINNLKQQPGKDMVILGSPRFAHHLMQLDLIDEYKITVSPVLIGK-GLPLF-QGL 164
Query: 333 YLEKNFMCVRRDYFGS 348
+ N + F S
Sbjct: 165 KEKINLKLIENKTFDS 180
>gi|265751224|ref|ZP_06087287.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_33FAA]
gi|263238120|gb|EEZ23570.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_33FAA]
Length = 172
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 4/125 (3%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSRRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQENDMLVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG + S + + L+DS+ +Y +++G+G L + + +
Sbjct: 108 GGGKLLTSLVKAGLLDSLTIYTVPVMVGKG---IGFIGETLGSQWKLAESGVLDNGVIRS 164
Query: 353 EYIGK 357
Y+
Sbjct: 165 TYLFD 169
>gi|111023875|ref|YP_706847.1| hypothetical protein RHA1_ro06923 [Rhodococcus jostii RHA1]
gi|110823405|gb|ABG98689.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 134
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG++ A S + LVD L+ +V G E ++ V + +G
Sbjct: 51 KNIHLSGGSSFARSVLALGLVDEFYLFVYPVV--SPGASWF-SEISDQRGLELVGTESYG 107
Query: 348 SDVC-LEYIGKN 358
+ V + Y+ +
Sbjct: 108 NGVVEVHYVPRE 119
>gi|269126012|ref|YP_003299382.1| bifunctional deaminase-reductase domain-containing protein
[Thermomonospora curvata DSM 43183]
gi|268310970|gb|ACY97344.1| bifunctional deaminase-reductase domain protein [Thermomonospora
curvata DSM 43183]
Length = 240
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G+ LL EGG +A + + + LVD + L + +IG L +
Sbjct: 166 EHGLAHLLCEGGPHLAAALLRAGLVDELCLNVAPTLIGGRHHTRLLADLDARVELRLSAV 225
Query: 344 DYFGSDVCLEYI 355
+ L Y+
Sbjct: 226 YTAEDVLFLRYL 237
>gi|218189111|gb|EEC71538.1| hypothetical protein OsI_03859 [Oryza sativa Indica Group]
Length = 272
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 57/189 (30%), Gaps = 51/189 (26%)
Query: 5 SFDARFMSAALRFSRWHVG-----------LTSTNP--------SVA---CLIVKDGIVI 42
S+D FM+ A ++ T P + CL+ ++GI++
Sbjct: 75 SWDDYFMAIAFLSAKRSKDPNRQTIRHDFLSTFCQPYIPEWQILPLGLEPCLVSQEGIIL 134
Query: 43 GRGVTAYG----------------GCP---------HAEVQALEEAGE-EARGATAYVTL 76
G G + G P HAEV A+ A G YVT+
Sbjct: 135 GIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTM 194
Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
PC+ + + V D V + LS G+ V + +I
Sbjct: 195 FPCNECAK---IIIQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQI 251
Query: 137 FLHAYLTRQ 145
+ R
Sbjct: 252 PIKFQEPRN 260
>gi|261404542|ref|YP_003240783.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261281005|gb|ACX62976.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 185
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
T + + + + +K + + + + L + + + GGA+
Sbjct: 64 HTDSEKEFWELVHSKEKYVFSRTQKGTDHKAIFINDRILEEVNKLKNQPGKDIWLYGGAS 123
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ +FIN LVD L +V+G G P + + N V F
Sbjct: 124 LITTFINLGLVDEYRLSVHPVVLG-EGKPLFV-DIKQRLNLKMVNTRTF 170
>gi|54294884|ref|YP_127299.1| hypothetical protein lpl1963 [Legionella pneumophila str. Lens]
gi|148359559|ref|YP_001250766.1| dihydrofolate reductase [Legionella pneumophila str. Corby]
gi|53754716|emb|CAH16203.1| hypothetical protein lpl1963 [Legionella pneumophila str. Lens]
gi|148281332|gb|ABQ55420.1| dihydrofolate reductase [Legionella pneumophila str. Corby]
Length = 181
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T P + + + +II + L++ L +G+ + ++GG +
Sbjct: 64 TFDEWPYGSIPVIVMSSKPIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITI 123
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
F+ + LV+ + + ++IG G + ++ G V + Y
Sbjct: 124 QG-FLQNNLVNEMTITVIPVLIGSGRSLFGSLKNDIKLTHRLTTSYP-GGFVQINY 177
>gi|261405573|ref|YP_003241814.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
gi|261282036|gb|ACX64007.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp.
Y412MC10]
Length = 173
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 30/117 (25%), Gaps = 39/117 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D FM A S V ++V+ ++G G P
Sbjct: 9 DWDTYFMDIAFMVSTRSQC---PRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMIA 65
Query: 54 ------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE L + G+T YVT EPC
Sbjct: 66 EDYELVVQDGKESMVKKQRCIRTIHAEQNLLLFTDRIDREGSTVYVTDEPCWTCANM 122
>gi|86606059|ref|YP_474822.1| riboflavin biosynthesis protein RibD domain-containing protein
[Synechococcus sp. JA-3-3Ab]
gi|86554601|gb|ABC99559.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Synechococcus sp. JA-3-3Ab]
Length = 224
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 9/222 (4%)
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
R H+ +A S D I + A+ A+++G T+ A
Sbjct: 1 MKTARPHVVAILAQSLDGRIATHRGQRPHFASAEDHQHLETQAARQQALIMGAATLRAYG 60
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-----ALLAPVIIVTENDDPVLALA 259
L R L + + + + +
Sbjct: 61 TSLRIRDPELIQRRLQQGLSPQPLTIICSGSGEIPEDLPFFRQPLTRWLWTTPQGSRLWQ 120
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
R I DL L L G+ + + GG + +F+ + +D + + + ++
Sbjct: 121 NRTGFEEIWVAADWDLPARLARLRSLGIERVGLLGGGRLLGAFLQAGALDELWVTLAPVL 180
Query: 320 I-GEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEYIGK 357
+ G P+ +E L + ++ L Y +
Sbjct: 181 LSGYADAPASIEGWQLQGSPPQLELLECHRGSKELFLRYRVE 222
>gi|307571064|emb|CAR84243.1| comEB [Listeria monocytogenes L99]
Length = 176
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA- 63
T T V IV+D +I G + G HAE+ A+ +
Sbjct: 11 STCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCA 70
Query: 64 --GEEARGATAYVTLEPCSHY 82
G A YVT PC
Sbjct: 71 KFGATTDKAELYVTHFPCLAC 91
>gi|169351688|ref|ZP_02868626.1| hypothetical protein CLOSPI_02469 [Clostridium spiroforme DSM 1552]
gi|169291910|gb|EDS74043.1| hypothetical protein CLOSPI_02469 [Clostridium spiroforme DSM 1552]
Length = 245
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+ + + + LL++GG + SF+N LVD I L + +
Sbjct: 141 HVMDILYIKCKIKKLLLQGGGILNGSFVNKNLVDEISLIIAPDI 184
>gi|120610819|ref|YP_970497.1| deaminase-reductase domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120589283|gb|ABM32723.1| bifunctional deaminase-reductase domain protein [Acidovorax
citrulli AAC00-1]
Length = 180
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
++ + L +GV + V+GG V SF+ L+ +++ ++IG G P
Sbjct: 94 FSSWPPEEAMQELAHQGVQRVYVDGG-QVVQSFLRDGLIADMVITTVPVLIGS-GRPLF- 150
Query: 330 EEGYLEKNFMCVRRDYF 346
+ + V F
Sbjct: 151 GALSRDIDLKLVSSRSF 167
>gi|301165871|emb|CBW25444.1| putative deaminase [Bacteriovorax marinus SJ]
Length = 158
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 33/159 (20%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT---------------------- 47
M A+ S + V + V K+ + G
Sbjct: 1 MLQAMMASFKSK---DPSTKVGAVFVDKNNHQVTMGYNGFVAGIDETKLPWGKDPKAPLE 57
Query: 48 -AYGG-CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
G HAE A+ A + G AYVTL PC + ++ V +
Sbjct: 58 YQKYGYVVHAEANAILHAKDSLEGTRAYVTLFPCHECAKLLASSKVC-----EVVYLSDK 112
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
+ + + GI ++ + + +
Sbjct: 113 HCETESNRISKKIFELAGIEYRQLEIQDTIVNSMHQHFQ 151
>gi|134103078|ref|YP_001108739.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291008968|ref|ZP_06566941.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133915701|emb|CAM05814.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 187
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 2/117 (1%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ + + + V++ + + + DL +++ L L
Sbjct: 60 PAWASRPEGETQETIDWMNGTPKVVISDSLTESPWDGAVVAGGDLAEIVERLKAEPGGDL 119
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ GGA +A I L+D + L+ + IG G+P G + F V F
Sbjct: 120 ITYGGATLASELIARGLLDELHLFVNPTAIG-TGLPVFPNTGAY-QRFRLVTARPFD 174
>gi|120405009|ref|YP_954838.1| CMP/dCMP deaminase [Mycobacterium vanbaalenii PYR-1]
gi|119957827|gb|ABM14832.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium vanbaalenii
PYR-1]
Length = 164
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--GCP--HAEVQALEE 62
+ A+ +R + + + DG ++G G G P HAE A
Sbjct: 22 QEMLEVAVEEARKGLAEGGI--PIGAALFSTDGALLGSGHNRRVQLGDPSVHAETDAFRN 79
Query: 63 AGEE--ARGATAYVTLEPCSHYG 83
AG + R TL PC +
Sbjct: 80 AGRQRGYRSTIMVTTLSPCWYCS 102
>gi|319948484|ref|ZP_08022618.1| hypothetical protein ES5_03898 [Dietzia cinnamea P4]
gi|319437851|gb|EFV92837.1| hypothetical protein ES5_03898 [Dietzia cinnamea P4]
Length = 248
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-IGEGGIPSPLEEGYLE 335
+ ++ G + + EGG + +F+ VD ++L + + +G P G
Sbjct: 162 AVRSLATHFGASEVAFEGGPGLLGTFLREGAVDELVLSVAPQLVVGGDRTPLASGPGASR 221
Query: 336 KNFMC 340
Sbjct: 222 VPMRV 226
>gi|25028230|ref|NP_738284.1| hypothetical protein CE1674 [Corynebacterium efficiens YS-314]
gi|259507289|ref|ZP_05750189.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|23493514|dbj|BAC18484.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165093|gb|EEW49647.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 67
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GGA +A + + + L+D +L +++G G + + F G
Sbjct: 4 GGATLAGAAMQAGLIDEYVLVTHPVLVGGGT--PFFTTLDSRTHLDLIETRLFPGGVTLA 61
Query: 353 EY 354
Y
Sbjct: 62 RY 63
>gi|329929487|ref|ZP_08283221.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
gi|328936375|gb|EGG32822.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
Length = 183
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L + GG +A S + +L+D ++L + +++G G+P F + + +
Sbjct: 115 LWLCGGGELAGSLLQHKLIDQLVLKINPVMVG-DGVPLF-GSVKPRLKFDLIDMKQYANG 172
Query: 350 VC 351
V
Sbjct: 173 VL 174
>gi|108797195|ref|YP_637392.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
MCS]
gi|119866281|ref|YP_936233.1| deaminase-reductase domain-containing protein [Mycobacterium sp.
KMS]
gi|108767614|gb|ABG06336.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
MCS]
gi|119692370|gb|ABL89443.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp.
KMS]
Length = 177
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
G + V GG +A F+ + LVD +I+ + +G G P+
Sbjct: 107 GGKDVWVVGGGELAAQFVAAGLVDEMIVSYAPCTLGAGSPVLPI 150
>gi|299137017|ref|ZP_07030200.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298601532|gb|EFI57687.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 176
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
G +A S + L+D LY IV+G G P V D D + L
Sbjct: 116 AGPDLAGSLTDLGLIDEYRLYLRPIVLG-RGKPFFSGPR---PPLRLVASDLIAEDVIRL 171
Query: 353 EYIG 356
YI
Sbjct: 172 TYIP 175
>gi|18699612|gb|AAL78655.1|AF468456_1 competence protein [Listeria monocytogenes]
Length = 176
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 24 LTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA- 63
T T V IV+D +I G + G HAE+ A+ +
Sbjct: 11 STCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCA 70
Query: 64 --GEEARGATAYVTLEPCSHY 82
G A YVT PC
Sbjct: 71 KFGATTDKAELYVTHFPCLAC 91
>gi|256852331|ref|ZP_05557707.1| dihydrofolate reductase [Enterococcus faecalis T8]
gi|256712185|gb|EEU27217.1| dihydrofolate reductase [Enterococcus faecalis T8]
Length = 180
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 57 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 117 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAKSIPVRLKQVYQKNELVYSIY 174
Query: 355 IGKN 358
+N
Sbjct: 175 QREN 178
>gi|229547761|ref|ZP_04436486.1| dihydrofolate reductase family protein [Enterococcus faecalis
TX1322]
gi|307292491|ref|ZP_07572341.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0411]
gi|229307105|gb|EEN73092.1| dihydrofolate reductase family protein [Enterococcus faecalis
TX1322]
gi|306496464|gb|EFM66031.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0411]
gi|315028389|gb|EFT40321.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX4000]
Length = 196
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAKSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|163839843|ref|YP_001624248.1| hypothetical protein RSal33209_1096 [Renibacterium salmoninarum
ATCC 33209]
gi|162953319|gb|ABY22834.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 201
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+++ G A+ + ++L+D I+L +++G G PL + + D F
Sbjct: 129 VVLLAGGAITAELLKAKLIDEILLLTGPVLLGSGR---PLADLSEPIPLSLLSVDTF 182
>gi|172057479|ref|YP_001813939.1| deaminase-reductase domain-containing protein [Exiguobacterium
sibiricum 255-15]
gi|171990000|gb|ACB60922.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
sibiricum 255-15]
Length = 173
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG + + +L+D + L + +V+G G S EG LE F G
Sbjct: 107 IWLIGGGELIQEALRLQLIDQLELAIAPVVLGSG--ISLFPEGTLETRFRLTGCRPSGQF 164
Query: 350 VCLEY 354
+ Y
Sbjct: 165 IMATY 169
>gi|307610712|emb|CBX00319.1| hypothetical protein LPW_20451 [Legionella pneumophila 130b]
Length = 181
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ + +II + L++ L +G+ + ++GG + F+ + LV+ + +
Sbjct: 81 KPIQIPEHLRHIITVSNQSPPDLVSELSLQGIQHVYLDGGITIQG-FLQNNLVNEMTITV 139
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
++IG G + ++ G V ++Y
Sbjct: 140 IPVLIGSGRSLFGSLKNDIKLTHQLTTSYP-GGFVQIKY 177
>gi|315173574|gb|EFU17591.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX1346]
Length = 196
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|315150283|gb|EFT94299.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0012]
Length = 196
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|315144018|gb|EFT88034.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX2141]
Length = 196
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|295087405|emb|CBK68928.1| Dihydrofolate reductase [Bacteroides xylanisolvens XB1A]
Length = 173
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + V GG S I + L+D I LY +++G+G +
Sbjct: 104 TDIQVIGGGKFITSLIEASLLDEITLYIVPVMLGDGIK---FIGKTFGSKWELTGHRVID 160
Query: 348 SD-VCLEY 354
+ V L Y
Sbjct: 161 NQVVYLTY 168
>gi|227553719|ref|ZP_03983768.1| dihydrofolate reductase family protein [Enterococcus faecalis HH22]
gi|229548277|ref|ZP_04437002.1| dihydrofolate reductase family protein [Enterococcus faecalis ATCC
29200]
gi|293384226|ref|ZP_06630115.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
R712]
gi|293387107|ref|ZP_06631671.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
S613]
gi|307269158|ref|ZP_07550515.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX4248]
gi|307272162|ref|ZP_07553422.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0855]
gi|307282355|ref|ZP_07562563.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0860]
gi|307288723|ref|ZP_07568702.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0109]
gi|312904953|ref|ZP_07764091.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0635]
gi|312906341|ref|ZP_07765351.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
DAPTO 512]
gi|312909687|ref|ZP_07768540.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis DAPTO 516]
gi|227177101|gb|EEI58073.1| dihydrofolate reductase family protein [Enterococcus faecalis HH22]
gi|229306493|gb|EEN72489.1| dihydrofolate reductase family protein [Enterococcus faecalis ATCC
29200]
gi|291078435|gb|EFE15799.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
R712]
gi|291083462|gb|EFE20425.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
S613]
gi|306500336|gb|EFM69674.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0109]
gi|306503803|gb|EFM73029.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0860]
gi|306511051|gb|EFM80061.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0855]
gi|306514536|gb|EFM83094.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX4248]
gi|310627617|gb|EFQ10900.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
DAPTO 512]
gi|310631709|gb|EFQ14992.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0635]
gi|311289988|gb|EFQ68544.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis DAPTO 516]
gi|315026137|gb|EFT38069.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX2137]
gi|315032108|gb|EFT44040.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0017]
gi|315035371|gb|EFT47303.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0027]
gi|315146752|gb|EFT90768.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX4244]
gi|315153762|gb|EFT97778.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0031]
gi|315156910|gb|EFU00927.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0043]
gi|315158926|gb|EFU02943.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0312]
gi|315166066|gb|EFU10083.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX1302]
gi|315167858|gb|EFU11875.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX1341]
gi|315170547|gb|EFU14564.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX1342]
gi|315574768|gb|EFU86959.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0309B]
gi|315582158|gb|EFU94349.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0309A]
gi|327534090|gb|AEA92924.1| riboflavin biosynthesis protein RibD domain protein [Enterococcus
faecalis OG1RF]
gi|329574578|gb|EGG56142.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX1467]
Length = 196
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|145231731|ref|XP_001399339.1| DRAP deaminase [Aspergillus niger CBS 513.88]
gi|134056243|emb|CAK37500.1| unnamed protein product [Aspergillus niger]
Length = 240
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVT-AYGG 51
S+ +M+ L +R L TN V L++ I++ G T G
Sbjct: 15 STPHLHYMTQCLALARKAPAL-PTNFRVGALLLSRSTTDTTPTYSSDILLSTGYTMELAG 73
Query: 52 CPHAEVQALEE 62
HAE L
Sbjct: 74 NTHAEQCCLSN 84
>gi|29374933|ref|NP_814086.1| hypothetical protein EF0294 [Enterococcus faecalis V583]
gi|255970909|ref|ZP_05421495.1| dihydrofolate reductase [Enterococcus faecalis T1]
gi|255973423|ref|ZP_05424009.1| dihydrofolate reductase [Enterococcus faecalis T2]
gi|256617275|ref|ZP_05474121.1| dihydrofolate reductase [Enterococcus faecalis ATCC 4200]
gi|256761278|ref|ZP_05501858.1| dihydrofolate reductase [Enterococcus faecalis T3]
gi|256957759|ref|ZP_05561930.1| dihydrofolate reductase [Enterococcus faecalis DS5]
gi|256959561|ref|ZP_05563732.1| dihydrofolate reductase [Enterococcus faecalis Merz96]
gi|256963123|ref|ZP_05567294.1| dihydrofolate reductase [Enterococcus faecalis HIP11704]
gi|257080023|ref|ZP_05574384.1| dihydrofolate reductase [Enterococcus faecalis JH1]
gi|257083437|ref|ZP_05577798.1| dihydrofolate reductase [Enterococcus faecalis Fly1]
gi|257085712|ref|ZP_05580073.1| dihydrofolate reductase [Enterococcus faecalis D6]
gi|257088804|ref|ZP_05583165.1| dihydrofolate reductase [Enterococcus faecalis CH188]
gi|257415085|ref|ZP_05592079.1| dihydrofolate reductase [Enterococcus faecalis AR01/DG]
gi|257418131|ref|ZP_05595125.1| dihydrofolate reductase [Enterococcus faecalis T11]
gi|257420637|ref|ZP_05597627.1| dihydrofolate reductase [Enterococcus faecalis X98]
gi|294779249|ref|ZP_06744654.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis PC1.1]
gi|300861980|ref|ZP_07108060.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis TUSoD Ef11]
gi|29342391|gb|AAO80157.1| conserved hypothetical protein [Enterococcus faecalis V583]
gi|255961927|gb|EET94403.1| dihydrofolate reductase [Enterococcus faecalis T1]
gi|255966295|gb|EET96917.1| dihydrofolate reductase [Enterococcus faecalis T2]
gi|256596802|gb|EEU15978.1| dihydrofolate reductase [Enterococcus faecalis ATCC 4200]
gi|256682529|gb|EEU22224.1| dihydrofolate reductase [Enterococcus faecalis T3]
gi|256948255|gb|EEU64887.1| dihydrofolate reductase [Enterococcus faecalis DS5]
gi|256950057|gb|EEU66689.1| dihydrofolate reductase [Enterococcus faecalis Merz96]
gi|256953619|gb|EEU70251.1| dihydrofolate reductase [Enterococcus faecalis HIP11704]
gi|256988053|gb|EEU75355.1| dihydrofolate reductase [Enterococcus faecalis JH1]
gi|256991467|gb|EEU78769.1| dihydrofolate reductase [Enterococcus faecalis Fly1]
gi|256993742|gb|EEU81044.1| dihydrofolate reductase [Enterococcus faecalis D6]
gi|256997616|gb|EEU84136.1| dihydrofolate reductase [Enterococcus faecalis CH188]
gi|257156913|gb|EEU86873.1| dihydrofolate reductase [Enterococcus faecalis ARO1/DG]
gi|257159959|gb|EEU89919.1| dihydrofolate reductase [Enterococcus faecalis T11]
gi|257162461|gb|EEU92421.1| dihydrofolate reductase [Enterococcus faecalis X98]
gi|294453678|gb|EFG22075.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis PC1.1]
gi|300848505|gb|EFK76262.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Enterococcus faecalis TUSoD Ef11]
gi|323479507|gb|ADX78946.1| riboflavin biosynthesis protein RibD C- domain protein
[Enterococcus faecalis 62]
Length = 180
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 57 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 117 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 174
Query: 355 IGKN 358
+N
Sbjct: 175 QREN 178
>gi|29345516|ref|NP_809019.1| hypothetical protein BT_0106 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337408|gb|AAO75213.1| riboflavin biosynthesis protein RibD-like protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 148
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + V GG S I + L+D I LY +++G+G +
Sbjct: 79 TDIQVIGGGKFITSLIEASLLDEITLYIVPVMLGDGIK---FIGKTFGSKWELTGHRVID 135
Query: 348 SD-VCLEY 354
+ V L Y
Sbjct: 136 NQVVYLTY 143
>gi|332687244|ref|YP_004457018.1| cytosine deaminase [Melissococcus plutonius ATCC 35311]
gi|332371253|dbj|BAK22209.1| cytosine deaminase [Melissococcus plutonius ATCC 35311]
Length = 164
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGC 52
M VS ++ + S+ + N L+V D G ++ +T +
Sbjct: 1 MEVSKIKKDHLYYLKRCIEISKQAK--KNGNTPFGALLVDDAGNILFEQENIEITEHICT 58
Query: 53 PHAE-VQALEEAGEEAR----GATAYVTLEPCSHY 82
HAE A + + ++ G T Y T EPC+
Sbjct: 59 GHAETTLAARASKKYSKDFLWGCTLYTTAEPCAMC 93
>gi|323487785|ref|ZP_08093043.1| pyrimidine reductase [Planococcus donghaensis MPA1U2]
gi|323398519|gb|EGA91307.1| pyrimidine reductase [Planococcus donghaensis MPA1U2]
Length = 178
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
LLV G A + + + L+D + L +V+GEG +E +K F
Sbjct: 109 QRLLVYGSAELIETLLRHDLIDELHLMTFPLVLGEG--KRLFKENADQKMFNLQNVRSTD 166
Query: 348 SDVCL 352
S V +
Sbjct: 167 SGVLI 171
>gi|317968925|ref|ZP_07970315.1| putative cytosine deaminase [Synechococcus sp. CB0205]
Length = 144
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 23/151 (15%)
Query: 11 MSA----ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY--GGCP--HAEVQALE 61
M A + + ++ + DG ++ RG G P H E Q +
Sbjct: 1 MQRLVDAARAEAERGWSEGGI--PIGAVLAQEDGTIVARGHNQRVQNGDPTSHGETQCIR 58
Query: 62 EAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
G R T TL PC + F R + WL
Sbjct: 59 NPGRRRDWRELTLVTTLSPCPMCAGTAVLLGFRRVVIGER----------KTFQGAETWL 108
Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150
+ GI V + + + + ++ E +
Sbjct: 109 KEAGIEVTCLDDPHCEELMQTMQQQKPELWA 139
>gi|163740840|ref|ZP_02148233.1| cytidine and deoxycytidylate deaminase family protein
[Phaeobacter gallaeciensis 2.10]
gi|161385831|gb|EDQ10207.1| cytidine and deoxycytidylate deaminase family protein
[Phaeobacter gallaeciensis 2.10]
Length = 147
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPC 79
V ++ +G V+ R HAEV + EA E G YVTLEPC
Sbjct: 18 PVGAALISPEGQVVARAGNRTRERSDPTAHAEVLVIREACAAAGSERLTGHDLYVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 AMC 80
>gi|297189938|ref|ZP_06907336.1| deaminase-reductase domain-containing protein [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718593|gb|EDY62501.1| deaminase-reductase domain-containing protein [Streptomyces
pristinaespiralis ATCC 25486]
Length = 205
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G ++ + GGA ++ + L+D + L+ ++ G G+ + G +
Sbjct: 125 ALEQAKAVCGGRNVDIAGGARTVQQYLRAGLIDELQLHVVPVLFGA-GLRLFDDLGAERR 183
Query: 337 NFMCVRR 343
VR
Sbjct: 184 RLEIVRV 190
>gi|148239680|ref|YP_001225067.1| tRNA-specific adenosine deaminase [Synechococcus sp. WH 7803]
gi|147848219|emb|CAK23770.1| tRNA-specific adenosine deaminase [Synechococcus sp. WH 7803]
Length = 175
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
+M L + VG T P VA +++ + G IG G HAE+ AL +
Sbjct: 16 RAWMQRLLNRAER-VGATGEIP-VAAVLLDEAGRCIGHGSNRRECLNDPLGHAELMALRQ 73
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 74 GAWLLGDWRMNHCTLLVTLEPCPMC 98
>gi|262204379|ref|YP_003275587.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262087726|gb|ACY23694.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 197
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344
+ + GG ++A + VD I L + ++IG G+P P G + F
Sbjct: 127 RDIWLCGGGSLAGALHEE--VDEIHLKLNPVIIG-TGVPLFDLPAGSGPVLDRFRLRSAR 183
Query: 345 YFGSDV-CLEYIGK 357
F S V L Y +
Sbjct: 184 TFDSGVALLIYTRR 197
>gi|262381562|ref|ZP_06074700.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 2_1_33B]
gi|262296739|gb|EEY84669.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 2_1_33B]
Length = 172
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDILVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG + S I + L+DS+ +Y +++G+G L + G V
Sbjct: 108 GGGRLLTSLIKAGLLDSLTIYTVPVMVGKG---IGFIGETLGLEWKLSESGVLDGGIVRS 164
Query: 353 EYIGK 357
Y+
Sbjct: 165 TYLFD 169
>gi|261404711|ref|YP_003240952.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261281174|gb|ACX63145.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 183
Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
+ L + V L + GG +A S + +L+D ++L + +++G G+P
Sbjct: 103 FIRHLKEQTVGKLWLCGGGELAGSLLQHKLIDQLVLKINPVMVG-DGVPLF-GSVKPRLK 160
Query: 338 FMCVRRDYFGSDVC 351
+ + + V
Sbjct: 161 LDLIDMKQYANGVL 174
>gi|163847996|ref|YP_001636040.1| deaminase-reductase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222525879|ref|YP_002570350.1| bifunctional deaminase-reductase domain-containing protein
[Chloroflexus sp. Y-400-fl]
gi|163669285|gb|ABY35651.1| bifunctional deaminase-reductase domain protein [Chloroflexus
aurantiacus J-10-fl]
gi|222449758|gb|ACM54024.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
Y-400-fl]
Length = 196
Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 2/107 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
+ V + DL K + L + + V G A +
Sbjct: 78 DPFAGWINRVQKYVVSNTLTDQDITWHPTTIIRGDDLVKTVADLRAQPGGYIYVYGSAMM 137
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ + + LVD ++L IV+G G P + F V
Sbjct: 138 VQTLLAADLVDELLLTIEPIVLGGGKTIFPRGGALIP--FELVSSAR 182
>gi|330809392|ref|YP_004353854.1| bifunctional deaminase-reductase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377500|gb|AEA68850.1| putative bifunctional deaminase-reductase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 178
Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K L+ L +GV + V+GG V SF+ LV +++ ++IG G P
Sbjct: 97 PKDLMAELESQGVQRVYVDGG-RVVQSFLRDGLVTDMVITTVPVLIGS-GRPLF-GGLER 153
Query: 335 EKNFMCVRRDYF 346
+ + V F
Sbjct: 154 DVDLKLVSSRSF 165
>gi|224500498|ref|ZP_03668847.1| hypothetical protein LmonF1_12846 [Listeria monocytogenes Finland
1988]
gi|224501577|ref|ZP_03669884.1| hypothetical protein LmonFR_03502 [Listeria monocytogenes FSL
R2-561]
Length = 160
Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 22/75 (29%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA---GEEA 67
V IV+D +I G + G HAE+ A+ + G
Sbjct: 1 MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60
Query: 68 RGATAYVTLEPCSHY 82
A YVT PC
Sbjct: 61 DKAELYVTHFPCLAC 75
>gi|5051817|emb|CAB45046.1| hypothetical protein [Amycolatopsis orientalis]
Length = 205
Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+LV G A + + + L+D L I++G G P + V + +
Sbjct: 137 ILVHGSATLNRALHEAGLIDRYHLLVFPILLGA-GKPLFSDADLPATRLKLVEHEVY 192
>gi|29831349|ref|NP_825983.1| cytidine/deoxycytidine deaminase [Streptomyces avermitilis
MA-4680]
gi|29608464|dbj|BAC72518.1| putative cytidine/deoxycytidine deaminase [Streptomyces
avermitilis MA-4680]
Length = 153
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEE 62
+++ A+ +R + + + DG ++GRG HAE A
Sbjct: 11 RAWLATAVEEARAGLAEGGI--PIGAALYGADGALLGRGHNRRVQDDDPSMHAETAAFRS 68
Query: 63 AGEE--ARGATAYVTLEPCSHYG 83
AG + RG T TL PC +
Sbjct: 69 AGRQRTYRGTTMVTTLSPCWYCS 91
>gi|116619171|ref|YP_821327.1| deaminase-reductase domain-containing protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116222333|gb|ABJ81042.1| bifunctional deaminase-reductase domain protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 184
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
+ + GG + SF+++ +D ++ +IG GIP + + + +
Sbjct: 115 KHIWMMGGGELIASFLDAGEIDEFDIHVIPTLIG-EGIPL-IARRHRDVELRLRSARKYA 172
Query: 347 GSDVCLEYIG 356
V L Y
Sbjct: 173 DGVVRLRYEV 182
>gi|209544158|ref|YP_002276387.1| CMP/dCMP deaminase [Gluconacetobacter diazotrophicus PAl 5]
gi|209531835|gb|ACI51772.1| CMP/dCMP deaminase zinc-binding [Gluconacetobacter diazotrophicus
PAl 5]
Length = 178
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG ++ R + HAE+ + A G T VTLEPC
Sbjct: 32 PVGAVLLGPDGTILARAGNQVEAGHDAAAHAEMLVMRAAARILGSPRLTGCTLVVTLEPC 91
Query: 80 SHY 82
Sbjct: 92 PMC 94
>gi|330903778|gb|EGH34350.1| cytosine deaminase [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 40
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA 48
FM AA ++ + + +IV G +IGRG
Sbjct: 4 FMQAAFDEAQLGLKEGGI--PIGSVIVHGGKIIGRGHNR 40
>gi|291299415|ref|YP_003510693.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290568635|gb|ADD41600.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 200
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L+++G + + LVD + L + +G G S +++ V
Sbjct: 126 RGLMLQGSPGLVRELLAEGLVDELRLMIEPVTLGGG--KSIFPADGMKRPLELVSTTTGK 183
Query: 348 SDVCL-EYIGK 357
+ + L Y K
Sbjct: 184 TGIQLNVYRPK 194
>gi|226359947|ref|YP_002777725.1| hypothetical protein ROP_05330 [Rhodococcus opacus B4]
gi|226238432|dbj|BAH48780.1| hypothetical protein [Rhodococcus opacus B4]
Length = 192
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G+ G P+ +G + + + D+ L
Sbjct: 127 GSLSMNRALMAAGLVDRLQVTLFPVITGKTG-DDPIFQGAADFDLELLENRTLDGDIQEL 185
Query: 353 EYIG 356
Y
Sbjct: 186 IYRP 189
>gi|307275263|ref|ZP_07556408.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX2134]
gi|306508043|gb|EFM77168.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX2134]
Length = 196
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDSVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|315160626|gb|EFU04643.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0645]
gi|315579472|gb|EFU91663.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0630]
Length = 196
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHSEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|254580711|ref|XP_002496341.1| ZYRO0C16148p [Zygosaccharomyces rouxii]
gi|238939232|emb|CAR27408.1| ZYRO0C16148p [Zygosaccharomyces rouxii]
Length = 155
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYG----GCPHAEVQ 58
S +D M A + + P CLI +DG V+GRG H E+
Sbjct: 5 SRWDGLGMDIAYEEALIG-YKENGVPIGGCLIDSRDGRVLGRGHNLRYQKNSATLHGEIS 63
Query: 59 ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCA 89
LE G R AT Y TL PC +
Sbjct: 64 TLENCGRLPASVYRHATMYTTLSPCDMCTGAIVMY 98
>gi|269794762|ref|YP_003314217.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
gi|269096947|gb|ACZ21383.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
Length = 183
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L I G + V GG +A ++ +D I + + + + G P
Sbjct: 105 ALPAIREAAGERDIWVVGGGDLAGQLLDIGALDEIAISVAPVALAGGAPLLP--RRVESD 162
Query: 337 NFMCVRRDYFGSDVCLEYIGK 357
V G L Y +
Sbjct: 163 RLHLVSAKAVGQFARLVYEVR 183
>gi|302534595|ref|ZP_07286937.1| gp20 [Streptomyces sp. C]
gi|302443490|gb|EFL15306.1| gp20 [Streptomyces sp. C]
Length = 117
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 36/105 (34%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA-YGGCP--------------- 53
MS A S + V +++ + V+ G G P
Sbjct: 1 MSIAEAVSSRADCTRA---QVGAVLLSRTNRVLSVGYNGLPAGLPGCATAANCPRGRLTT 57
Query: 54 ---------------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE A+ A + RG+T YVT PC
Sbjct: 58 EECARDSDYSNCAAVHAEANAIHHADPTQLRGSTLYVTRMPCPAC 102
>gi|227818281|ref|YP_002822252.1| cytidine/deoxycytidylate deaminase family protein [Sinorhizobium
fredii NGR234]
gi|227337280|gb|ACP21499.1| cytidine/deoxycytidylate deaminase family protein [Sinorhizobium
fredii NGR234]
Length = 164
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR---GVTAYGG--C 52
MP + +D + A +R + ++ +DG V+ G ++ GG
Sbjct: 1 MPGTKRPYDESLLRKAFDVARRSRE--GGDHPFGSILADRDGNVLLEQCNGYSSEGGDRT 58
Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYG 83
HAE AG+ T Y + EPC+
Sbjct: 59 AHAERLLATRAGKSYDLDFLAECTMYTSAEPCAMCS 94
>gi|217964371|ref|YP_002350049.1| ComE operon protein 2 [Listeria monocytogenes HCC23]
gi|217333641|gb|ACK39435.1| ComE operon protein 2 [Listeria monocytogenes HCC23]
Length = 160
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 22/75 (29%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA---GEEA 67
V IV+D +I G + G HAE+ A+ + G
Sbjct: 1 MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60
Query: 68 RGATAYVTLEPCSHY 82
A YVT PC
Sbjct: 61 DKAELYVTHFPCLAC 75
>gi|29366796|ref|NP_813736.1| gp20 [Streptomyces phage phiBT1]
gi|29243116|emb|CAD80144.1| gp20 [Streptomyces phage phiBT1]
Length = 116
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 27/99 (27%), Gaps = 36/99 (36%)
Query: 17 FSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--------------------- 53
+ S V ++V + V G G G P
Sbjct: 1 MATRADCTRS---QVGAVLVNANNEVRGTGYNGAPSGVPGCASAGACPRGRLSAVECAPN 57
Query: 54 ---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE A+ A E G+T Y T EPC
Sbjct: 58 SDYANCTADHAERNAIRHAPAAELPGSTLYTTREPCPAC 96
>gi|269122663|ref|YP_003310840.1| dihydrofolate reductase [Sebaldella termitidis ATCC 33386]
gi|268616541|gb|ACZ10909.1| dihydrofolate reductase [Sebaldella termitidis ATCC 33386]
Length = 172
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + +++ +VD +I+ + +++G GIP ++ L K F + +G
Sbjct: 103 KNIWIIGGTQILAPLLDNDMVDKMIIQIAPVLLGA-GIPLFTQKEVL-KRFYLEELNQYG 160
Query: 348 SDVCLEY 354
L Y
Sbjct: 161 QFAELVY 167
>gi|212533865|ref|XP_002147089.1| DRAP deaminase, putative [Penicillium marneffei ATCC 18224]
gi|210072453|gb|EEA26542.1| DRAP deaminase, putative [Penicillium marneffei ATCC 18224]
Length = 240
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 31/105 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKDG---------IVIGRGVT-AYGGCP 53
S +++ L+ + TN V + I++ ++ G T G
Sbjct: 15 SSHLKYLRECLKLAENSPPR-PTNFRVGAILILRHDTPDDTSDDDKILSTGYTMELPGNT 73
Query: 54 HAEVQALEE-------------------AGEEARGATAYVTLEPC 79
HAE L+ A R YVT+EPC
Sbjct: 74 HAEQCCLQNYAAAHGVYEESVADAFPPAAERNGRKILLYVTMEPC 118
>gi|190892283|ref|YP_001978825.1| dihydrofolate reductase [Rhizobium etli CIAT 652]
gi|190697562|gb|ACE91647.1| probable dihydrofolate reductase protein [Rhizobium etli CIAT 652]
Length = 213
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 39/170 (22%), Gaps = 3/170 (1%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDS 234
G R G+ D + G R + P + D+
Sbjct: 32 GPEMFQWFFHTRTFRAMTGKDDGSEGIDQDYAARAMAGFGAFILGRNMFGPIRGEWPNDA 91
Query: 235 KIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
P + + + L G + +
Sbjct: 92 WKGWWGPNPPYHAPTYILTHYPREPIVMEGGTTFHFITGGIEEALDKAKAAAGDKDVKIG 151
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
GG A ++ + LVD + + +V+G+G F
Sbjct: 152 GGVATVRQYLQAGLVDELHFAVAPVVLGKGEA-MFAGIDLPALGFRVTEH 200
>gi|15896130|ref|NP_349479.1| deoxycytidylate deaminase [Clostridium acetobutylicum ATCC 824]
gi|15025923|gb|AAK80819.1|AE007785_4 Deoxycytidylate deaminase [Clostridium acetobutylicum ATCC 824]
gi|325510284|gb|ADZ21920.1| Deoxycytidylate deaminase [Clostridium acetobutylicum EA 2018]
Length = 162
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M + ++ A L +IVK+ +I G T + G
Sbjct: 1 MERRDKNNYYLDIAETVLERGTCLRRDY---GAIIVKNDEIISTGYTGSPRGRKNCSDLG 57
Query: 54 ---------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQF 91
HAE A+ A E G+ Y+ + +
Sbjct: 58 VCIRKKLNIPRGTHYELCRSVHAEANAIISAARHEMLGSVLYLVGKNAETHEYVEKAFPC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 SMCKRL 123
>gi|54297914|ref|YP_124283.1| hypothetical protein lpp1969 [Legionella pneumophila str. Paris]
gi|53751699|emb|CAH13121.1| hypothetical protein lpp1969 [Legionella pneumophila str. Paris]
Length = 181
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T P + + + +II + L++ L +G+ + ++GG +
Sbjct: 64 TFDEWPYGSIPVIVMSSKLIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITI 123
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
F+ + LV+ + + ++IG G + ++ G V + Y
Sbjct: 124 QG-FLQNNLVNEMTITVIPVLIGSGRSLFGSLKNDIKLTHRLTTSYP-GGFVQINY 177
>gi|34810500|pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
gi|34810501|pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG--GCP--HAEVQ 58
S +D + A + P CLI KDG V+GRG G H E+
Sbjct: 11 SKWDQKGXDIAYEEAALG-YKEGGVPIGGCLINNKDGSVLGRGHNXRFQKGSATLHGEIS 69
Query: 59 ALEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
LE G+ + T Y TL PC + V +
Sbjct: 70 TLENCGRLEGKVYKDTTLYTTLSPCDXCTGAIIXYGIPRCVVGENVNF---------KSK 120
Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149
G ++L +G V + + K ++ + +
Sbjct: 121 GEKYLQTRGHEVVVVDDERCKKIXKQFIDERPQDW 155
>gi|318041317|ref|ZP_07973273.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. CB0101]
Length = 178
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQA 59
+ +M LR + VG P VA +++ G +G G HAE+ A
Sbjct: 12 AEHILWMQRLLRRAE-AVGCEGEIP-VAAVVLDAQGRAVGWGSNRRERDQQPLGHAELMA 69
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
L++A T VTLEPC
Sbjct: 70 LQQAARLRGDWRFNDCTLLVTLEPCPMC 97
>gi|307320960|ref|ZP_07600368.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|306893444|gb|EFN24222.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
Length = 174
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303
P + + + N D+ L++ L + + GG + SF+
Sbjct: 63 PSPWAYGDQRVFVVTSRPMDNPKGPLETRNDVDALISELRAFDDGDVWMLGGGQLQMSFM 122
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYI 355
+D I +Y ++G G PL + V L Y
Sbjct: 123 QRGALDEIEIYVIPEILGSGLPLFPLTGLRASP--TLISAMPIDKGCVRLHYR 173
>gi|270157283|ref|ZP_06185940.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
D-4968]
gi|289164330|ref|YP_003454468.1| dihydrofolate reductase and methyltransferase [Legionella
longbeachae NSW150]
gi|269989308|gb|EEZ95562.1| riboflavin biosynthesis protein RibD [Legionella longbeachae
D-4968]
gi|288857503|emb|CBJ11335.1| putative dihydrofolate reductase and methyltransferase [Legionella
longbeachae NSW150]
Length = 202
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
L+ L RG L ++GG + +FI L+ + + + +++G G S
Sbjct: 100 PTDLVKRLTKRGFKRLYIDGGITI-QNFIADNLISDLTITIAPVLLGSG--RSLFGRLVH 156
Query: 335 EKNFMCVRRDYFGS 348
+ + G
Sbjct: 157 DIELEHLETKCIGG 170
>gi|302527539|ref|ZP_07279881.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302436434|gb|EFL08250.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 200
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
G + I + LVD ++L++ I++G G S E V
Sbjct: 139 GGVLVTEAIKAGLVDELVLHQVPILLGGG--RSFFGELPEHVRLRLVE 184
>gi|47094097|ref|ZP_00231822.1| comE operon protein 2 [Listeria monocytogenes str. 4b H7858]
gi|47017527|gb|EAL08335.1| comE operon protein 2 [Listeria monocytogenes str. 4b H7858]
Length = 160
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 22/75 (29%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCP------------------HAEVQALEEA---GEEA 67
V IV+D +I G + G HAE+ A+ + G
Sbjct: 1 MVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATT 60
Query: 68 RGATAYVTLEPCSHY 82
A YVT PC
Sbjct: 61 DKAELYVTHFPCLAC 75
>gi|332528963|ref|ZP_08404930.1| bifunctional deaminase-reductase-like protein [Hylemonella gracilis
ATCC 19624]
gi|332041624|gb|EGI77983.1| bifunctional deaminase-reductase-like protein [Hylemonella gracilis
ATCC 19624]
Length = 178
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ ++ L GV + ++GG + SF+ LV +++ +++G G P
Sbjct: 97 PQAVMEELARSGVRRVYLDGGL-LLQSFLREGLVADMVITTVPVLLGS-GRPLF-GGLTS 153
Query: 335 EKNFMCVRRDYF 346
+ + V F
Sbjct: 154 DIDLTLVSSRSF 165
>gi|291301048|ref|YP_003512326.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290570268|gb|ADD43233.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 197
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ V GGAA+ FI + L+D I L+ + ++ G G
Sbjct: 126 DVTVMGGAALGRQFIEAGLLDEISLHVAPVLFG-DGTRLFETMKIDHTRLQVRDV 179
>gi|333028380|ref|ZP_08456444.1| hypothetical protein STTU_5884 [Streptomyces sp. Tu6071]
gi|332748232|gb|EGJ78673.1| hypothetical protein STTU_5884 [Streptomyces sp. Tu6071]
Length = 188
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ VG + P L + L S TA
Sbjct: 6 YGMNMTLDGYVSAVGDDLGWSGPPGRELFQWWLDHERATGLSLYGRKLWETMSSHWPTAD 65
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEG 294
P + E++ + + + + +L+ +T L + G
Sbjct: 66 RQPGVTPAESEFARIWRDTPRVVFSSTLGEVAGNARLVRGDAVAEITRLKSGDGGPMSIG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
GA +A + + + L+D ++ +++G G P N V F G V
Sbjct: 126 GATLAGAAMRAGLIDEYVIAAHPVLVGG-GTPFFTALDSW-VNLHLVETRTFPGGVVLSR 183
Query: 354 Y 354
Y
Sbjct: 184 Y 184
>gi|313203114|ref|YP_004041771.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
gi|312442430|gb|ADQ78786.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
Length = 188
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++++ G + ++S + +VD ++ + +++G G+P ++ V F
Sbjct: 120 KNIIIFGSPSASNSLLKMGVVDEFWIFVNPVLLG-QGVPLF-KDITETVLLTLVETRTFD 177
Query: 348 SDVC-LEY 354
+ V L Y
Sbjct: 178 NGVIALHY 185
>gi|229825684|ref|ZP_04451753.1| hypothetical protein GCWU000182_01047 [Abiotrophia defectiva ATCC
49176]
gi|229790247|gb|EEP26361.1| hypothetical protein GCWU000182_01047 [Abiotrophia defectiva ATCC
49176]
Length = 162
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M ++ A S+ L +IVK+ VI G T
Sbjct: 1 MERRDKINYYLDIAEVVSQRSTCLRRHY---GAVIVKNDEVIATGYTGAPRGRKNCSDLG 57
Query: 54 ---------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQF 91
HAE A+ A EE G+ Y+
Sbjct: 58 FCMREKLNVPRGERYELCRSVHAEQNAIISASREELIGSNIYIVGIETRDGSYVANANSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 AMCKRV 123
>gi|300790423|ref|YP_003770714.1| riboflavin biosynthesis protein [Amycolatopsis mediterranei U32]
gi|299799937|gb|ADJ50312.1| putative riboflavin biosynthesis protein [Amycolatopsis
mediterranei U32]
Length = 195
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
G V S + + LVD I+L++ +++G G S +E +
Sbjct: 135 GGGVLASALQAGLVDEIVLHQVPVLLGGG--RSFFQELPSHVRLRLLE 180
>gi|253571597|ref|ZP_04849003.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251838805|gb|EES66890.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 148
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 12/120 (10%)
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGG 295
I P + + ++ LT + R V + V GG
Sbjct: 27 TYIFEHWGGWPYKSKKTFVVSHYDTNVSEKENVSFLTDMPLRAVNELKSSSETDIQVIGG 86
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
S I + L+D I LY +++G G + + + VCL Y
Sbjct: 87 GKFITSLIEASLLDEITLYIIPVMLGNGIK---FIGKTFGSKWELTQNKILDNQVVCLTY 143
>gi|189467383|ref|ZP_03016168.1| hypothetical protein BACINT_03771 [Bacteroides intestinalis DSM
17393]
gi|189435647|gb|EDV04632.1| hypothetical protein BACINT_03771 [Bacteroides intestinalis DSM
17393]
Length = 173
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 12/120 (10%)
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGG 295
I P + + ++ LT + R V + V GG
Sbjct: 52 TYIFEHWGGWPYKSKKTFVVSHYDTNVSEKENVSFLTDMPLRAVNELKSSSETDIQVIGG 111
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
S I + L+D I LY +++G G + + + VCL Y
Sbjct: 112 GKFITSLIEASLLDEITLYIIPVMLGNGIK---FIGKTFGSKWELTQNKILDNQVVCLTY 168
>gi|149918294|ref|ZP_01906785.1| RibD C-terminal domain [Plesiocystis pacifica SIR-1]
gi|149820820|gb|EDM80229.1| RibD C-terminal domain [Plesiocystis pacifica SIR-1]
Length = 203
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L +G + V+GG + SF+ + L++ +IL I+IG G E +
Sbjct: 110 ALMDHLAEQGWSRAYVDGGL-LVQSFLRAGLIEDMILTTIPILIGAG--KRLFGELPGDI 166
Query: 337 NFMCVRRDYFGS 348
+ VR + F +
Sbjct: 167 DLELVRSEVFEN 178
>gi|60680775|ref|YP_210919.1| hypothetical protein BF1255 [Bacteroides fragilis NCTC 9343]
gi|60492209|emb|CAH06974.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 148
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 12/120 (10%)
Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT--------SLLVEGG 295
I P + + ++ LT + R V + V GG
Sbjct: 27 TYIFEHWGGWPYKSKKTFVVSHYDTNVSEKENVSFLTDMPLRAVNELKSNSETDIQVIGG 86
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
S I + L+D I LY +++G G + + + VCL Y
Sbjct: 87 GKFITSLIEASLLDEITLYIIPVMLGNGIK---FIGKTFGSKWELTQNKILDNQVVCLTY 143
>gi|13471055|ref|NP_102624.1| hypothetical protein mlr0926 [Mesorhizobium loti MAFF303099]
gi|14021799|dbj|BAB48410.1| mlr0926 [Mesorhizobium loti MAFF303099]
Length = 188
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ + ++ + + E D K +
Sbjct: 33 HQHFNDMMRQASAVLAGRRMYETMRFWDSPDRETGATEVERDFADAWRDTPKIVFSTTLR 92
Query: 271 DCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+L+ V SL ++ GGA +A + L+D LY +V+G
Sbjct: 93 QVGSNARLVNGDAETAVRSLKTKTDGLVILGGADLAADLTRAGLIDEYRLYMHPVVLGG- 151
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGKN 358
G P L + + V L Y N
Sbjct: 152 GKPYFQSGLSLA--LKPLGTESLPQGVTLLRYAPAN 185
>gi|315650982|ref|ZP_07904020.1| dihydrofolate reductase [Eubacterium saburreum DSM 3986]
gi|315486762|gb|EFU77106.1| dihydrofolate reductase [Eubacterium saburreum DSM 3986]
Length = 176
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V +N + +++ + I ++++L+ L G +
Sbjct: 53 WNAYNQIITELSPDNWVYDNLLTYVFTHREQQDSDKIIFTSDNMEELIRKLKGVEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I+S ++D ++ ++G GI + E + V
Sbjct: 113 ICGGADLVQQAISSDVIDEYLISIIPTILG-NGIKLF-SQNDAEHKLKLINTITNNGIVE 170
Query: 352 LEYIGK 357
L YI +
Sbjct: 171 LNYIRR 176
>gi|304319888|ref|YP_003853531.1| cytidine and deoxycytidylate deaminase family protein [Parvularcula
bermudensis HTCC2503]
gi|303298791|gb|ADM08390.1| cytidine and deoxycytidylate deaminase family protein [Parvularcula
bermudensis HTCC2503]
Length = 172
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 4 SSFD-ARFMSAALRFSRWHV--GLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHA 55
S D R+M AL + G V +++ G +I V HA
Sbjct: 9 SDADLERWMDHALGLASMAARNGEV----PVGAVLLSATGQLIAEAVNTPIAQCDPTAHA 64
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
E+ L + G A G CA I I +V DDP G
Sbjct: 65 ELAVLRK-GALATGNYRLTGTTLLVTLEPCAMCAGAICHARIGHLVYGADDPKGGAVRHG 123
>gi|224824076|ref|ZP_03697184.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
gi|224603495|gb|EEG09670.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
Length = 220
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 29/121 (23%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + G + K + V +
Sbjct: 62 DFAARGFQNVGAWILGRNMFGPIRGDWPDTNWKGWWGDNPPYHVPVFILTHHARPPIEME 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + + L + + GG ++ L+D + + + +++G
Sbjct: 122 GDTTFHFITGGIHEALDRAREAAAGMDVRIGGGPDTVKQYLREGLIDELHIAIAPVLLGR 181
Query: 323 G 323
G
Sbjct: 182 G 182
>gi|310722526|ref|YP_003969349.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
gi|306021369|gb|ADM79903.1| Cd dCMP deaminase [Aeromonas phage phiAS5]
Length = 182
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 46/179 (25%), Gaps = 54/179 (30%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------ 48
M ++ + A ++ ++ V +I KD I G
Sbjct: 1 MKTTTM----LQNAFLVAQESKCVSY---RVGAIIAKDDRPISSGYNGTVSDQPNCDEVA 53
Query: 49 -YGGCP-------------------------------HAEVQALEEA---GEEARGATAY 73
G HAE+ A+ A G+ GAT Y
Sbjct: 54 LDNGWAEYVDVPGVGKELRLREDKSDDYSAWAKSNVIHAEMNAILFAARGGKSIEGATMY 113
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132
T+ PC + ++ D ++ G++ + + +
Sbjct: 114 CTMAPCPDCAKMIAQSRIRTLVYCEEYNGARQDWSKTLTDCGVKVIKIDKKFLTMINWQ 172
>gi|148927658|ref|ZP_01811113.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
gi|147886997|gb|EDK72510.1| bifunctional deaminase-reductase domain protein [candidate division
TM7 genomosp. GTL1]
Length = 189
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310
V A R L + + L + +L+ G + N L+D
Sbjct: 85 MQKIVFTKADRNSEWENTEFHRSGLIEFVEELKKQDGKDILILGSGTIVQQLANESLIDE 144
Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEY 354
S IV GEG PL +G + + + + F +V L Y
Sbjct: 145 YQFIVSPIVAGEGK---PLFKGVKQHSLKLLSVESFDSGNVVLRY 186
>gi|197119604|ref|YP_002140031.1| RibD_C domain-containing protein [Geobacter bemidjiensis Bem]
gi|197088964|gb|ACH40235.1| RibD_C domain protein [Geobacter bemidjiensis Bem]
Length = 187
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG +A F ++ L+D +I+ + +G+G P L G
Sbjct: 114 KNIWIVGGGDLAGQFYDAGLLDELIIQIGSVTLGKGKQLFP--RRVLSPILRLSSVRQMG 171
>gi|294654357|ref|XP_456407.2| DEHA2A01584p [Debaryomyces hansenii CBS767]
gi|199428817|emb|CAG84359.2| DEHA2A01584p [Debaryomyces hansenii]
Length = 321
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 11/119 (9%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEAG 64
M+ AL + T VAC++V ++ G + G HAE A+++
Sbjct: 11 MAIALFIGYRAMINNET--PVACILVSRSTNQILSIGYNDTNRSLNGTRHAEFIAIDKVM 68
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ + + G ++ + + G G
Sbjct: 69 SQIP---VHDRSDIAKIQGFFGDVILYVTVEPCIMCASALKQIGIGYVVYGCGNDRFGG 124
>gi|160878347|ref|YP_001557315.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
gi|160427013|gb|ABX40576.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg]
Length = 162
Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
M ++ A S+ L +IV + +I G G
Sbjct: 1 MERRDKVNYYLDIAETVSKRSTCLRRIY---GAVIVNNDEIIATGYVGAPRGRANCSDLN 57
Query: 54 ---------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQF 91
HAE A+ A E+ G+T Y+
Sbjct: 58 YCIRTKLSVPRGERYELCRSVHAEANAIISAPREKMLGSTLYLVGFEMPDMTYIQNANSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 SMCKRM 123
>gi|167946682|ref|ZP_02533756.1| bifunctional GMP synthase/glutamine amidotransferase protein
[Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 51
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP 53
M D FM P V L+V+DG VIG G G P
Sbjct: 1 MTPDEQDHHFMQ-CALALAARAEAVGEVP-VGALLVRDGEVIGEGWNRPIGKP 51
>gi|118473247|ref|YP_884723.1| dihydrofolate reductase [Mycobacterium smegmatis str. MC2 155]
gi|118174534|gb|ABK75430.1| dihydrofolate reductase [Mycobacterium smegmatis str. MC2 155]
Length = 175
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFIN 304
D P L R + + + + G + V GG VA F+
Sbjct: 64 WSYDQPAWVLTHRPEIAAESHPMQVFSGDVAELHPELVAAAGGKDVWVVGGGDVAAQFVA 123
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ L+D II+ + +G G P+ ++ G VC +
Sbjct: 124 ADLIDEIIVSYAPCTLGVGSRVLPMRS-----EWVLDDCARNGDFVCARWKRP 171
>gi|312900570|ref|ZP_07759869.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0470]
gi|311292294|gb|EFQ70850.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0470]
Length = 196
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLAADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNGLVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|302519372|ref|ZP_07271714.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
gi|302428267|gb|EFL00083.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
Length = 208
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
+ + + PV +VT P L+ + + + +
Sbjct: 77 RRMYDHGERAWGEEPPFHVPVFVVTHRPRPSRRLSDGTSFEFVTAGVAAAVAQAVAEARA 136
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG + V GG + + + ++D + L+ +++G G P E + + R +
Sbjct: 137 RG-GDVAVMGGGQIVSGALAAGVLDELRLHVVPVLLGG-GRPLFSEPLHPARVLETTRAE 194
Query: 345 Y 345
Sbjct: 195 M 195
>gi|162147097|ref|YP_001601558.1| cytidine deaminase protein [Gluconacetobacter diazotrophicus PAl 5]
gi|161785674|emb|CAP55245.1| putative cytidine deaminase protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 193
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG ++ R + HAE+ + A G T VTLEPC
Sbjct: 47 PVGAVLLGPDGTILARAGNQVEAGHDAAAHAEMLVMRAAARILGSPRLTGCTLVVTLEPC 106
Query: 80 SHY 82
Sbjct: 107 PMC 109
>gi|22299012|ref|NP_682259.1| hypothetical protein tlr1469 [Thermosynechococcus elongatus BP-1]
gi|22295194|dbj|BAC09021.1| tlr1469 [Thermosynechococcus elongatus BP-1]
Length = 176
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 1/146 (0%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R + + P++I+ +L L+ + + ++ +
Sbjct: 29 REHQGRSPQPLQIVCSASGELDLNLPFFRQPIPRALLTTEKGASRWQGATAFDHCWCAGG 88
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+ + GV +L V GG + S + +D + L +++G
Sbjct: 89 EAIDWPQAFAHLQAS-GVQTLAVLGGGQLFASLLEIGAIDELWLTLCPLLLGSAAPSLYP 147
Query: 330 EEGYLEKNFMCVRRDYFGSDVCLEYI 355
E + + G++V L Y
Sbjct: 148 EGNPCSGKLILLNVLPVGNEVYLHYR 173
>gi|295681434|ref|YP_003610008.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
CCGE1002]
gi|295441329|gb|ADG20497.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
CCGE1002]
Length = 220
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%)
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
D + G + K + V A
Sbjct: 60 NDDFAARGFQNVGAWILGRNMFGPIRGDWPDTNWKGWWGDSPPYHVPVFVLTHHARAPIE 119
Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+ + L + + GG ++ L+D + + + +++
Sbjct: 120 MAGGTTFHFITGGIREALDRAREAAAGMDVRIGGGPETIRQYLREGLIDELHVAIAPVLL 179
Query: 321 GEG 323
G G
Sbjct: 180 GRG 182
>gi|329939288|ref|ZP_08288624.1| putative cytidine and deoxycytidylate deaminase [Streptomyces
griseoaurantiacus M045]
gi|329301517|gb|EGG45411.1| putative cytidine and deoxycytidylate deaminase [Streptomyces
griseoaurantiacus M045]
Length = 294
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 31/109 (28%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV--IGRGVTAY-------GGC 52
++ D RFM+ ALR + V + +DG V + G
Sbjct: 135 SRAALDRRFMAGALREAGRSSDWWR---QVGAVAARDGEVLRVAHNHHHPTEYAPYIDGD 191
Query: 53 P----------------HAEVQALEEA---GEEARGATAYVTLEPCSHY 82
P HAE + A G GA YV+ PC
Sbjct: 192 PRNEFSRGVRTDLSTAIHAEASLVAGAAGEGMSLAGADLYVSTFPCPAC 240
>gi|116493268|ref|YP_805003.1| dihydrofolate reductase [Pediococcus pentosaceus ATCC 25745]
gi|116103418|gb|ABJ68561.1| Dihydrofolate reductase [Pediococcus pentosaceus ATCC 25745]
Length = 177
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P V + + + ++ + I + +L+ + + + G
Sbjct: 57 YEQVTQKLSPEKYVYADRQTYIVTSHLGEDTDKIKYWKQSPVELVKRIQKEKGKDVWIVG 116
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + + + L+D+ IL I +G G + + + V Y
Sbjct: 117 GAKLIDPLVQANLIDTYILTTVPIFLGSGIR--LFDRLEEQVPVRLIDVYQKNELVYSIY 174
Query: 355 IG 356
Sbjct: 175 QR 176
>gi|8778532|gb|AAF79540.1|AC023673_28 F21D18.9 [Arabidopsis thaliana]
Length = 331
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 18/68 (26%)
Query: 33 CLIVKDGIVIGRGVTA----YGGCPHAEVQALE--------------EAGEEARGATAYV 74
C+ ++DG VI G HAE++A++ + E+ YV
Sbjct: 183 CVFLEDGKVIASGRNRTNETRNATRHAEMEAIDQLVGQWQKDGLSPSQVAEKFSKCVLYV 242
Query: 75 TLEPCSHY 82
T EPC
Sbjct: 243 TCEPCIMC 250
>gi|87302789|ref|ZP_01085600.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. WH 5701]
gi|87282672|gb|EAQ74630.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. WH 5701]
Length = 169
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPHAE 56
P+SS +M LR ++ G P VA +++ G +G G T HAE
Sbjct: 8 PLSSQ-QFWMERLLRMAQRA-GEAGEIP-VAAIVLDGAGRALGWGTNRRQTHQDPLGHAE 64
Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ AL +A + VTLEPC
Sbjct: 65 LVALSQAARLIHDWRFNACSLLVTLEPCPMC 95
>gi|290959146|ref|YP_003490328.1| deaminase [Streptomyces scabiei 87.22]
gi|260648672|emb|CBG71785.1| putative deaminase [Streptomyces scabiei 87.22]
Length = 183
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 30/102 (29%), Gaps = 34/102 (33%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIVK-DGI-VIGRGVTAY----GGCPHAEVQAL-- 60
M AL + G V +++ DG V+ G HAEV AL
Sbjct: 24 MRLALAEAGRAAEGGDV----PVGAVVLSPDGTTVLATGHNEREATGDPTAHAEVLALRR 79
Query: 61 -------------------EEAGE-EARGATAYVTLEPCSHY 82
GE T VTLEPC+
Sbjct: 80 AAAALRATGARGSSAEEGGRRTGEWRLTDCTLVVTLEPCTMC 121
>gi|255039162|ref|YP_003089783.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254951918|gb|ACT96618.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 188
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
V E V + + N ++ + ++ L + L++ G +A S +N
Sbjct: 79 WVHEIPKFVFSTTLPSADWNNTTLIKDNVAEEISKLKQQPGKDLVIFGSPGLAKSLMNLG 138
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYI 355
L+D L I++G+G S + V GS V L Y
Sbjct: 139 LIDEYKLTLHPIILGKG--ISLFDSNTEMSKLKLVESKTLGSGVVTLHYT 186
>gi|226312451|ref|YP_002772345.1| hypothetical protein BBR47_28640 [Brevibacillus brevis NBRC 100599]
gi|226095399|dbj|BAH43841.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 186
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 2/147 (1%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
D E+ Q + + + T + + + +
Sbjct: 26 WCIMDAEMGFVHFLHQIDTILYGRKSYDLWGQYTPENEHTDTEKEIWGLVHRKEKYVFSK 85
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
+K + ++ + + +L + + + GGA++ +FI+ LVD L ++
Sbjct: 86 TQKGTDHKAIFINDNILEEVNLLKNKPGKDIWLYGGASLITTFISLELVDEFRLSVHPVI 145
Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+G G P + + N V
Sbjct: 146 LG-EGKPLFM-DIKQRLNLSLVNTKTL 170
>gi|167465254|ref|ZP_02330343.1| CMP/dCMP deaminase, zinc-binding protein [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|322384962|ref|ZP_08058618.1| DNA transport-associated-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321150259|gb|EFX43766.1| DNA transport-associated-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 170
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 40/156 (25%), Gaps = 39/156 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D FM A S V ++VK ++G G P
Sbjct: 6 DWDTYFMDIAYMASTRSQCSRRH---VGAVLVKGKKLLGTAYNGAPMGVPDCSEAGCMLV 62
Query: 54 ------------------------HAEVQALE-EAGEEARGATAYVTLEPCSHYGRSPPC 88
HAE L E+ GAT YVT +PC
Sbjct: 63 EEYELKVVDGKEEMIRKQRCIRTIHAEQNLLLFTDREDREGATVYVTDQPCWTCANMLAN 122
Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
+ R + + RG+ + G
Sbjct: 123 SGATEIVYHRPYPKDMKKVTELMQSRGMVFRQLDGY 158
>gi|111220356|ref|YP_711150.1| hypothetical protein FRAAL0887 [Frankia alni ACN14a]
gi|111147888|emb|CAJ59553.1| conserved hypothetical protein [Frankia alni ACN14a]
Length = 207
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GG +A I + LVD L+ + +V+G G P + + + F
Sbjct: 143 GGPTLAGHAIRAGLVDECHLFLTPVVVGAGVRALP---EGVRVRLELLGQHRF 192
>gi|333026800|ref|ZP_08454864.1| putative riboflavin biosynthesis protein RibD domain-containing
protein [Streptomyces sp. Tu6071]
gi|332746652|gb|EGJ77093.1| putative riboflavin biosynthesis protein RibD domain-containing
protein [Streptomyces sp. Tu6071]
Length = 208
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 2/189 (1%)
Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216
+VS D + G I ++H G D +
Sbjct: 9 SVSLDGFVAGPDDGPGRHPLGIGGERLHRWLFDLATWRARAGQEGGDRGAGDDIMGEYFA 68
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ +I + + + PV +VT L+ + +
Sbjct: 69 RTGAAVIGRRMYDHGEKAWGEEPPFHVPVFVVTHRPRASRRLSDGTSFEFVTAGVAAAVA 128
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ + RG + V GG + + + + ++D + L+ +++G G P + + +
Sbjct: 129 QAVAEARARG-GDVAVMGGGQIVSAALAAGVLDELRLHVVPVLLGG-GRPLFAQPLHPAR 186
Query: 337 NFMCVRRDY 345
R +
Sbjct: 187 VLETTRAEM 195
>gi|313103531|pdb|2XW7|A Chain A, Structure Of Mycobacterium Smegmatis Putative Reductase
Ms0308
gi|313103532|pdb|2XW7|B Chain B, Structure Of Mycobacterium Smegmatis Putative Reductase
Ms0308
Length = 178
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFIN 304
D P L R + + + + G + V GG VA F+
Sbjct: 67 WSYDQPAWVLTHRPEIAAESHPMQVFSGDVAELHPELVAAAGGKDVWVVGGGDVAAQFVA 126
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ L+D II+ + +G G P+ ++ G VC +
Sbjct: 127 ADLIDEIIVSYAPCTLGVGSRVLPM-----RSEWVLDDCARNGDFVCARWKRP 174
>gi|254466312|ref|ZP_05079723.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
gi|206687220|gb|EDZ47702.1| cytosine deaminase [Rhodobacterales bacterium Y4I]
Length = 156
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVAC-LIVKDGIVIGRGVTA----YGGCP 53
M S M AL +R G V LI DG V
Sbjct: 1 MAFKS----HMDKALEQARAAAARGEV----PVGAALIAPDGQVAALAGNRTRELNDPTA 52
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ + EA E G YVTLEPC+
Sbjct: 53 HAEILTIREACARLGSERLTGYDLYVTLEPCAMC 86
>gi|302529017|ref|ZP_07281359.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302437912|gb|EFL09728.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 194
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
R ++V G +V H+ + + LVD L ++G G P G + CV
Sbjct: 119 KREERDVVVTGSLSVVHTLLAADLVDEYRLLTFPTIVGNGTRLFPDGTGVA--HLECVSV 176
Query: 344 DYFGSDVCLEYIGK 357
+ G+ Y+ +
Sbjct: 177 ERVGAATLSRYVRE 190
>gi|302869129|ref|YP_003837766.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302571988|gb|ADL48190.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
Length = 191
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L+ L R + + GG +A ++ +D +++ + +++G G ++ G+ +
Sbjct: 114 LVRELKTRPGRDIWLCGGGQLAGQLVDE--IDELVVKLNPVIVGSGIK--LVDSGFDPRR 169
Query: 338 FMCVRRDYFG-SDVCLEYIGKN 358
F V L Y +
Sbjct: 170 LTLTSARPFDAGVVVLRYTRND 191
>gi|260223245|emb|CBA33614.1| hypothetical protein Csp_B19940 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 215
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 28/123 (22%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + G + + V +
Sbjct: 62 DFAARGFQNVGAWILGRNMFGPVRGPWPDESWRGWWGDNPVYHVPVFVLTHHARPPLVME 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + L G + V GG ++ L+D + + S +++G
Sbjct: 122 GGTTFHFVTEGPVVALERARAAAGGKDVRVGGGVNTIQQYLRLGLIDEMHIAISPVLLGA 181
Query: 323 GGI 325
G
Sbjct: 182 GER 184
>gi|253681165|ref|ZP_04861968.1| cytidine and deoxycytidylate deaminase family protein
[Clostridium botulinum D str. 1873]
gi|253563014|gb|EES92460.1| cytidine and deoxycytidylate deaminase family protein
[Clostridium botulinum D str. 1873]
Length = 162
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 31/94 (32%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M ++ T + +IVK+ +I G T + G
Sbjct: 1 MERIDKHNYYLDICQTILERG---TCLRRNFGAIIVKNDEIISSGYTGSPRGRKNCCDLG 57
Query: 54 ---------------------HAEVQALEEAGEE 66
HAE A+ A +
Sbjct: 58 ICRREELKVERGTRYELCRSVHAEQNAIISARRQ 91
>gi|227536884|ref|ZP_03966933.1| deaminase-reductase domain protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227243311|gb|EEI93326.1| deaminase-reductase domain protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 187
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 6/157 (3%)
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
+ ++ S + I PV ND
Sbjct: 33 CIMDEDMDFAGFMSGIDTIFYGRVSYDAWGNYQPAISAGPVEKQLWNDIHSKQKFVFSSQ 92
Query: 265 INIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + +G + + GGA++ SFI L+D + + +G
Sbjct: 93 SRADDHATFIPSDIAQRVSDIKAQGGKDIWLYGGASLIRSFIQLGLIDIYRISVHPVALG 152
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
G E +R + F S V L Y K
Sbjct: 153 SG--KPLFENLKDRVQLNLIRTNTFKSGVVQLIYEQK 187
>gi|301162372|emb|CBW21917.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 172
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDILVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y ++ G+G + + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMAGKG---IGFIGETFGSLWKLSESRVLDNGVV 162
>gi|254821940|ref|ZP_05226941.1| hypothetical protein MintA_18552 [Mycobacterium intracellulare ATCC
13950]
Length = 116
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 10/79 (12%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----- 338
+G+ +L EGG + + + V + + + + P+
Sbjct: 42 EQGMHRILCEGGPTLLDELVEADAVTELCVTLAPRL----AASQPVGYRVHPARLTAPVT 97
Query: 339 -MCVRRDYFGSDVCLEYIG 356
+ L+Y
Sbjct: 98 MRLAHALVCDDYLFLKYSR 116
>gi|320010586|gb|ADW05436.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 197
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
LLV G +A + ++ L D + L +++G G + + V G
Sbjct: 126 RDLLVMGSPTLARTLLHEGLADELRLMIMPVIVGGG--KTIFPGDGALRPLALVSTAISG 183
Query: 348 SDVCL-EYI 355
+ V + Y
Sbjct: 184 TGVHVCTYR 192
>gi|332523783|ref|ZP_08400035.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
gi|332315047|gb|EGJ28032.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
Length = 189
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+LV G ++ S ++ L+D I L S ++G G + + + F
Sbjct: 122 QDILVLGSPRLSRSLLSENLIDKITLTVSPTIVGNGLRLF----ENISSDLELISSKTF 176
>gi|255530589|ref|YP_003090961.1| bifunctional deaminase-reductase domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255343573|gb|ACU02899.1| bifunctional deaminase-reductase domain protein [Pedobacter
heparinus DSM 2366]
Length = 178
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GGA++ + + LVD + + I++G G + +
Sbjct: 108 KDIWLFGGASLTDALMKEGLVDELWMSVHPILLGNG--KPLFRTQDTRTQLTLLESKTYE 165
Query: 348 SDVC-LEYIGKNL 359
+ + L Y K
Sbjct: 166 TGLVSLRYSIKKE 178
>gi|312951985|ref|ZP_07770870.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0102]
gi|310630063|gb|EFQ13346.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0102]
Length = 196
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P + E+ + + + + D L+ L + + G
Sbjct: 73 YDQVTQELSPDVYFYEDKHSYIITSHPEPSTASRTFTKEDPVTLIRRLKEEDGAGIWIVG 132
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + L+D+ IL + +GEG + E + V Y
Sbjct: 133 GPKVVQPLLTADLIDTFILTTIPLFLGEG--IALYETMAQSIPVRLKQVYQKNELVYSIY 190
Query: 355 IGKN 358
+N
Sbjct: 191 QREN 194
>gi|229008029|ref|ZP_04165585.1| Bifunctional deaminase-reductase domain protein [Bacillus mycoides
Rock1-4]
gi|228753235|gb|EEM02717.1| Bifunctional deaminase-reductase domain protein [Bacillus mycoides
Rock1-4]
Length = 183
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG +A S +L+D ++L + I++GEG S V + +
Sbjct: 115 IWLCGGGELAGSLFKHKLIDQLVLKVNPIIVGEG--ISLFGSVKPRLKLKLVDMKQYSNG 172
Query: 350 VC 351
V
Sbjct: 173 VI 174
>gi|114327121|ref|YP_744278.1| tRNA-specific adenosine deaminase [Granulibacter bethesdensis
CGDNIH1]
gi|114315295|gb|ABI61355.1| tRNA-specific adenosine deaminase [Granulibacter bethesdensis
CGDNIH1]
Length = 178
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ +G ++ + + HAE+ A+ EA + G YVTLEPC
Sbjct: 53 PVGAVVISPEGYLLAQAHNLTEANHDASAHAEMLAMREAAKRLGSTRLIGCDLYVTLEPC 112
Query: 80 SHY 82
Sbjct: 113 PMC 115
>gi|284992017|ref|YP_003410571.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065262|gb|ADB76200.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 186
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V+GG V F+ + L+ + L R+ ++IGEG +P + VR
Sbjct: 117 GYRRVYVDGGRTVHD-FLAAGLIGDLTLSRAPVLIGEG--HTPFGPLPADVLLEHVRTQT 173
Query: 346 F-GSDVCLEYIGK 357
F G V Y +
Sbjct: 174 FRGGMVQTTYRVR 186
>gi|226226900|ref|YP_002761006.1| putative deaminase [Gemmatimonas aurantiaca T-27]
gi|226090091|dbj|BAH38536.1| putative deaminase [Gemmatimonas aurantiaca T-27]
Length = 144
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 30 SVACLIVKD--GIVIGRGVTA--YGG--CPHAEVQALEEAGEEARGA-----TAYVTLEP 78
V ++++ G +I R G HAEV AL EA A A T VTLEP
Sbjct: 18 PVGAVVMRTETGEIIVRAQNRMRRDGDATAHAEVLALREAARIAGDARLGEFTLVVTLEP 77
Query: 79 CSHY 82
C+
Sbjct: 78 CAMC 81
>gi|146418142|ref|XP_001485037.1| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC
6260]
Length = 281
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 18/203 (8%)
Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200
K+ +TL A D+ I A I+G +K+ H +R++ DAI+VGIGTV
Sbjct: 50 PQNSTPHKKPFVTLTYAQLLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTV 109
Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260
LADDP+L CR + P+ + + L I V
Sbjct: 110 LADDPKLNCRHEAGKSPRPVVLDPSGKWDYKLSQLHQLVDQNTDDIKALAPYIIVRDDVD 169
Query: 261 RKKNINII--------------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303
++ + L ++S+++EGGA + + +
Sbjct: 170 IDTKNEKEVSRQGGKYIRLSLLRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLLFQ 229
Query: 304 -NSRLVDSIILYRSQIVIGEGGI 325
+ S+I+ + +GE G+
Sbjct: 230 KTEAFIHSLIITIGPVYLGEQGV 252
>gi|159039637|ref|YP_001538890.1| deaminase-reductase domain-containing protein [Salinispora
arenicola CNS-205]
gi|157918472|gb|ABV99899.1| bifunctional deaminase-reductase domain protein [Salinispora
arenicola CNS-205]
Length = 195
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG +A ++ VD ++L + +V+G GIP ++ G+ F F
Sbjct: 124 RDIWLCGGGQLAGQLLDD--VDELVLKLNPVVVGS-GIPL-VDRGFDPHRFALTSTRPFD 179
Query: 348 SD-VCLEYIG 356
S V L Y
Sbjct: 180 SGVVVLRYTR 189
>gi|156030997|ref|XP_001584824.1| hypothetical protein SS1G_14279 [Sclerotinia sclerotiorum 1980]
gi|154700670|gb|EDO00409.1| hypothetical protein SS1G_14279 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 152
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 3 VSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCP--HAE 56
+S D + A+ ++ + +V ++G ++GRG G H E
Sbjct: 1 MSPLSDQEGFAIAVEEAKIGYEEGGV--PIGAALVSREGKLLGRGHNMRVQKGSAIHHGE 58
Query: 57 VQALEEAGEEA----RGATAYVTLEPCSHYGRSPPC 88
ALE +G +G+T Y T C YG S
Sbjct: 59 TSALENSGRLPASAYKGSTMYTTTGACLLYGISRVV 94
>gi|317473461|ref|ZP_07932755.1| RibD domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|316899111|gb|EFV21131.1| RibD domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 180
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+ E + ++ I L + ++ L R + + G
Sbjct: 59 YHQITTELSAGFWPYEGKMTYVMTHRAMEDKENIKFVNSPLDQFISALKDRPGKDIWICG 118
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS--DVCL 352
GA + + I S L+ + +++G G EG K + D D+
Sbjct: 119 GADLVNQLIKSGLISRFHISVIPVILGNGIR--LFHEGNPAKQLKLISADNLNGMTDLVY 176
Query: 353 E 353
E
Sbjct: 177 E 177
>gi|209966407|ref|YP_002299322.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
[Rhodospirillum centenum SW]
gi|209959873|gb|ACJ00510.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative
[Rhodospirillum centenum SW]
Length = 226
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCV 341
G+ LLVEGG V F+ S + L + +G+ G P ++ V
Sbjct: 144 GIDRLLVEGGTQVLTLFLASGCFHRLRLAVAPFFVGQAGAPRLAAAADYLHGGDRRLRVV 203
Query: 342 RRDYFGSDVCLEYIGK 357
G +E
Sbjct: 204 ATRSVGGIAVIELEND 219
>gi|15890403|ref|NP_356075.1| hypothetical protein Atu4585 [Agrobacterium tumefaciens str. C58]
gi|15158626|gb|AAK88860.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 175
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG + +F+ +D I +Y ++G G PL V
Sbjct: 108 DVWMLGGGKLQMAFLERGALDEIEIYVIPEILGSGEPLFPLTGHRASP--TLVSATAIEK 165
Query: 349 D-VCLEYI 355
V L Y
Sbjct: 166 GCVRLHYR 173
>gi|302542420|ref|ZP_07294762.1| DNA-binding protein [Streptomyces hygroscopicus ATCC 53653]
gi|302460038|gb|EFL23131.1| DNA-binding protein [Streptomyces himastatinicus ATCC 53653]
Length = 214
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 27/101 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +F + + D L
Sbjct: 83 PQRGPWQDYEWRGWWGDEPPFHTPVFVMTHHPRPSFTLSDTTFHFVDADPATVLAQAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GGA F+++ LVD++ + S + +G G
Sbjct: 143 AQGKDVRLGGGATTIREFLDADLVDTLHVTVSPVELGAGSR 183
>gi|94313409|ref|YP_586618.1| bifunctional deaminase-reductase-like protein [Cupriavidus
metallidurans CH34]
gi|93357261|gb|ABF11349.1| bifunctional deaminase-reductase-like protein [Cupriavidus
metallidurans CH34]
Length = 214
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 10/109 (9%), Positives = 26/109 (23%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
++ + V K +
Sbjct: 74 WILGRNMFGPIRGDWPDMNWNGWWGDSPPYHVPVFVLTHHPRPSVEMKGGTTFHFITGGI 133
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ L + + GG ++ L+D + + S +++G+G
Sbjct: 134 REALDRAREAAAGMDVRIGGGPETIRQYLRDGLIDELHIAISPVLLGQG 182
>gi|145223818|ref|YP_001134496.1| deaminase-reductase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145216304|gb|ABP45708.1| bifunctional deaminase-reductase domain protein [Mycobacterium
gilvum PYR-GCK]
Length = 199
Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 11/176 (6%)
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
I G++ DP + L S TA P
Sbjct: 26 YIADARGSIDWSDPNDEVHQYWNDFERDTALAFYGRRLYDLMSDYWPTADEDPDATPLIV 85
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFIN 304
D + K + +L VT L E GA +A +
Sbjct: 86 DFARIWRDMPKVVFSRTLESVDWNSRLERGDPVEVVTKLKAETDGQLEVAGATLAAPIVQ 145
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI-GKN 358
+ LVD + S + +G G+P + + F G V L Y ++
Sbjct: 146 AGLVDEYRIVVSPVAVGG-GLPFFPNLPSW-ISLRLLENRTFPGGTVLLRYEARRD 199
>gi|327439833|dbj|BAK16198.1| dihydrofolate reductase [Solibacillus silvestris StLB046]
Length = 189
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + + + + + ++++ + L + + + GGA++ +FIN
Sbjct: 77 WDLVHSKEKYVFSRTQNGTGHEAIFINDNIREEVIKLKNKPGKDIWLYGGASLITTFINL 136
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
RL+D L +V+G G P + + N V F
Sbjct: 137 RLIDEFRLSIHPVVLG-EGKPLFI-DVRERLNLKVVNTRTF 175
>gi|297560207|ref|YP_003679181.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844655|gb|ADH66675.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 251
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
RG+ +L EGG + + L+D + L ++ G +
Sbjct: 178 RGLPRILCEGGPRLLADVAAAGLLDEMCLTVVPLMAGGVQQRVAVGTAADAP 229
>gi|224013458|ref|XP_002296393.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968745|gb|EED87089.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 543
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
V+ + ++ I + + V S++VEGGA + SF+N
Sbjct: 330 VVEIKTQSMSTTTFTLLPCQVDQITNSLDLRHVMSQLYNHFEVDSVMVEGGAQILSSFMN 389
Query: 305 S-------------RLVDSIILYRSQIVIGEG 323
LVD + + S +++G
Sbjct: 390 ECVKKSNGKSGSKSSLVDCLCVTISPVIMGGK 421
>gi|158318268|ref|YP_001510776.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
gi|158113673|gb|ABW15870.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec]
Length = 185
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 42 IGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
+GRG A HAEV AL +A GAT VTLEPC+
Sbjct: 60 LGRGHNAREAAGDPTAHAEVVALRQAAARLGSWRLTGATLVVTLEPCTMC 109
>gi|319782622|ref|YP_004142098.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317168510|gb|ADV12048.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 199
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
V GGA A + I + LVD L+ + V+G G + + +N + +
Sbjct: 135 VFGGAGFASALIAAGLVDEFQLFINPAVLGAGRR---IFDQGGFRNLRLLGSKTYD 187
>gi|255525826|ref|ZP_05392755.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
gi|255510469|gb|EET86780.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7]
Length = 162
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M D ++ T + A +IVK+ +I G T
Sbjct: 1 MIRIDKDNYYLDICETVLERG---TCIRRNFAAIIVKNDEIIATGYTGAPRGRKNCCDLG 57
Query: 51 -----------GCP-------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQF 91
G HAE A+ + ++ G T Y+ + +
Sbjct: 58 YCKREHLNVPRGTRYELCRSVHAEQNAIISSRRQDMIGTTMYLVGKEHKTGEYVNNASPC 117
Query: 92 IIECGI 97
+
Sbjct: 118 ALCKRF 123
>gi|111018802|ref|YP_701774.1| bifunctional pyrimidine deaminase/reductase [Rhodococcus jostii
RHA1]
gi|110818332|gb|ABG93616.1| possible bifunctional pyrimidine deaminase/reductase [Rhodococcus
jostii RHA1]
Length = 181
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 3/125 (2%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + V++ D + L G+ ++V
Sbjct: 59 YWPRQTDDRTGITDELNQIQKYVVSSTMVDPQWRNSTVLTSDWIARVQALKGQEGRDIVV 118
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-C 351
G + H+ I S LVD L+ +V G G P +GY V F + V
Sbjct: 119 TGSIKLTHALIESGLVDEYRLFVYPVVQGRGRRLFP--DGYEMPRLQLVEARGFQNGVSL 176
Query: 352 LEYIG 356
L Y
Sbjct: 177 LHYTV 181
>gi|13472371|ref|NP_103938.1| hypothetical protein mlr2644 [Mesorhizobium loti MAFF303099]
gi|14023117|dbj|BAB49724.1| mlr2644 [Mesorhizobium loti MAFF303099]
Length = 189
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + G + L+D I++G G + E N R FG
Sbjct: 117 NHMTILGSGNLVAQLAEENLIDEYQFVIVPIMLGAG--RTMFEGIGNRLNVKLARSQAFG 174
Query: 348 S-DVCLEYIGK 357
+ +V L Y K
Sbjct: 175 NGNVFLRYEQK 185
>gi|291521186|emb|CBK79479.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7]
Length = 159
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHAEVQALE 61
++ A+ S S N A L+V KDG +I + T + HAE Q +E
Sbjct: 4 HEAYLKRAIELSVKSRE--SGNTPFAALLVDKDGNIIMEQMNNEITEHKCTGHAETQLVE 61
Query: 62 EA-----GEEARGATAYVTLEPCSHYG 83
A E T Y T EPC+
Sbjct: 62 RASHAYSKEFLWDCTLYTTAEPCAMCS 88
>gi|260778186|ref|ZP_05887079.1| putative deaminase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606199|gb|EEX32484.1| putative deaminase [Vibrio coralliilyticus ATCC BAA-450]
Length = 159
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 34 LIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
++ G V+G+GV + HAEV+A+ +A RG T + EPC+
Sbjct: 35 VVNSKGEVLGKGVNRVLENHDPTAHAEVEAIRDACRNTKSSHLRGLTLLASGEPCAMC 92
>gi|220913494|ref|YP_002488803.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
gi|219860372|gb|ACL40714.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 191
Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
GGA +A + + + LVD ++ S +V+G G P + + FG+ V L
Sbjct: 125 GGATIAVAALTAGLVDECQVFVSPVVVGGGLRFFPEGLELNLE---LLEERRFGNGVMYL 181
Query: 353 EYI 355
Y
Sbjct: 182 RYR 184
>gi|269794974|ref|YP_003314429.1| pyrimidine reductase, riboflavin biosynthesis [Sanguibacter
keddieii DSM 10542]
gi|269097159|gb|ACZ21595.1| pyrimidine reductase, riboflavin biosynthesis [Sanguibacter
keddieii DSM 10542]
Length = 289
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNF 338
RG+ +L EGG ++ ++ + +D + L S +V+G YL+
Sbjct: 203 ADRGLVRVLAEGGPSLLGDLVDGQHLDELCLTTSPLVVGGPAPRIVRTGDYLQREGRPPA 262
Query: 339 MCVRRDYFGSDVCLEY 354
V + G + +
Sbjct: 263 RLVHLLHSGGVLLARW 278
>gi|318057054|ref|ZP_07975777.1| hypothetical protein SSA3_03876 [Streptomyces sp. SA3_actG]
gi|318078495|ref|ZP_07985827.1| hypothetical protein SSA3_17704 [Streptomyces sp. SA3_actF]
Length = 188
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 10/181 (5%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ +VG + P L + L S TA
Sbjct: 6 YGMNMTLDGYVSVVGDDIGWSGPPGRELFQWWLDHERATGLSLYGRKLWETMSSHWPTAD 65
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEG 294
P + E++ + + + + +L+ +T L + G
Sbjct: 66 RQPGVTPAESEFARIWRDTPRVVFSSTLGEVAGNARLVGGDAVAEITRLKSGDGGPMSIG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
GA +A + + + L+D ++ +++G G P N V F G V
Sbjct: 126 GATLAGAAMRAGLIDEYVIAAHPVLVGG-GTPFFTALDSW-VNLDLVETRTFPGGVVLSR 183
Query: 354 Y 354
Y
Sbjct: 184 Y 184
>gi|260438412|ref|ZP_05792228.1| putative dCMP deaminase [Butyrivibrio crossotus DSM 2876]
gi|292808998|gb|EFF68203.1| putative dCMP deaminase [Butyrivibrio crossotus DSM 2876]
Length = 162
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 32/118 (27%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV---------------------T 47
++ A S+ L +IVK+ +I G
Sbjct: 9 YYLDIAESVSKRGTCLRK---RYGAVIVKNDEIISTGYVGAPRGRKNCSDLGYCIRNKLN 65
Query: 48 AYGGCP-------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
G HAE A+ A ++ +T ++ S +
Sbjct: 66 IPRGERYELCRSVHAEANAIISASRDKMIDSTLFLVGIELSDNTYVKNACCCSMCKRT 123
>gi|297199834|ref|ZP_06917231.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|297147509|gb|EFH28661.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 198
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + I+ LVD + L +++G G S E ++ F V
Sbjct: 133 GSPTLVRTLISEGLVDELQLIVMPVLLGGG--KSIFPEDGAKRPFELVST 180
>gi|222530354|ref|YP_002574236.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
6725]
gi|222457201|gb|ACM61463.1| CMP/dCMP deaminase zinc-binding [Caldicellulosiruptor bescii DSM
6725]
Length = 143
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA-----G 64
M + ++ S + VA +VKD +I + HAE+ A+ +A
Sbjct: 7 MKTLIEYASR-----SNDIPVAAAVVKDRRIISIKRNDSKKAIYHAEILAIIDATSKLST 61
Query: 65 EEARGATAYVTLEPCSHY 82
++ R +VT EPC
Sbjct: 62 KDLRSCEMFVTKEPCPMC 79
>gi|329965304|ref|ZP_08302231.1| conserved domain protein [Bacteroides fluxus YIT 12057]
gi|328522854|gb|EGF49960.1| conserved domain protein [Bacteroides fluxus YIT 12057]
Length = 128
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYI 355
+ LVD + LY S G GIP + ++ + ++ L Y
Sbjct: 63 ELTWEVFEQNLVDELYLYISS-YTGGSGIPIFSHNIKMSNHWKLEEAKVYNEEIVRLHYS 121
Query: 356 GKNL 359
++
Sbjct: 122 RVDI 125
>gi|322370974|ref|ZP_08045527.1| bifunctional deaminase-reductase domain protein [Haladaptatus
paucihalophilus DX253]
gi|320549409|gb|EFW91070.1| bifunctional deaminase-reductase domain protein [Haladaptatus
paucihalophilus DX253]
Length = 188
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + F + L+D IIL + + + G P V +G
Sbjct: 117 KNIWLVGGGDLVGQFHDHGLLDEIILSVAPVTLASGAPLLP--RRIATPPLKLVDVKNYG 174
Query: 348 S 348
Sbjct: 175 G 175
>gi|89096823|ref|ZP_01169714.1| hypothetical protein B14911_18000 [Bacillus sp. NRRL B-14911]
gi|89088203|gb|EAR67313.1| hypothetical protein B14911_18000 [Bacillus sp. NRRL B-14911]
Length = 189
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + GGA++ +FIN +LVD L +V+GEG + N F
Sbjct: 120 KDIWLYGGASLITTFINLKLVDEFRLSVHPVVLGEG--KPLFTDIKQRVNLKLAETKKF 176
>gi|330447957|ref|ZP_08311605.1| bifunctional deaminase-reductase domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328492148|dbj|GAA06102.1| bifunctional deaminase-reductase domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 188
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ S + T P + + D+++L+T L G
Sbjct: 62 MISSMNLTPEQWPYGDTRIIVLSNTVKQAPENVREHVEMYSGDIQELMTKLESEGHQHAY 121
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-V 350
++GG +FIN +L+D I + + +++G GIP + + F ++ V
Sbjct: 122 IDGG-KTIQAFINCQLIDEINITYAPVLLG-EGIPLF-GRLLKDIKLEQAQSTAFANNFV 178
Query: 351 CLEY 354
++Y
Sbjct: 179 QVKY 182
>gi|33862872|ref|NP_894432.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9313]
gi|33634788|emb|CAE20774.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9313]
Length = 163
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----HAEVQALEEAG 64
+M L ++ +G P V+ +++ DG IG G HAE+ AL +A
Sbjct: 6 WMLRLLTRAKQ-LGDFGEVP-VSAVVLDADGRCIGHGSNQRHRRRDPLGHAELIALRQAA 63
Query: 65 -----EEARGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 64 WLRSDWRFNDCTLIVTLEPCPMC 86
>gi|271968229|ref|YP_003342425.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270511404|gb|ACZ89682.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 183
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + G A + S + + ++D + L IV+G G E+G + + F
Sbjct: 113 KDISITGSATLVRSLLRAGVLDELRLLVHPIVVGSG--KRLFEDGGDQVPLKLIDSQTFD 170
Query: 348 SDVC-LEYIGKN 358
+ V L Y +
Sbjct: 171 TGVLYLTYAPAD 182
>gi|227903931|ref|ZP_04021736.1| deaminase-reductase domain protein [Lactobacillus acidophilus ATCC
4796]
gi|227868322|gb|EEJ75743.1| deaminase-reductase domain protein [Lactobacillus acidophilus ATCC
4796]
Length = 127
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
+ I + + + G+ L V G + F+ + LVD
Sbjct: 18 SSAYIDYLNQNNISWIATGKEHVDLKRAMAILADEFGIKRLAVVSG-KINGGFLKADLVD 76
Query: 310 SIILYRSQIVIGEGGIPSPLEEG--YLEKNFMCVRRDYF-GSDVCLEYIGK 357
I + + G G P+ ++ + V L Y+ K
Sbjct: 77 EISILLGSGIDGRTGQPAMVDGLTSSTPVPLKLKSVQSYPDGAVWLRYLTK 127
>gi|226229023|ref|YP_002763129.1| hypothetical protein GAU_3617 [Gemmatimonas aurantiaca T-27]
gi|226092214|dbj|BAH40659.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 191
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 6/140 (4%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ H + + P + + PV+ A + + +++ L
Sbjct: 54 WLWRHHLAPDAPAPMPW-FYAQPCWVFSSRTLPVVEGADVRFVRGDVRPVFDAMQETLRE 112
Query: 282 LVGRG--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
G ++ + GG +A ++ L+D +I+ + + +G+G P
Sbjct: 113 RHAAGQTAPNIWIVGGGDLAGQVHDAGLLDEMIVTITSVTLGQGAPLFP--RRVATPALA 170
Query: 340 CVRRDYFGSD-VCLEYIGKN 358
G + V L Y
Sbjct: 171 LKAVRQVGPEFVQLTYQVPK 190
>gi|146338259|ref|YP_001203307.1| putative pyrimidine reductase [Bradyrhizobium sp. ORS278]
gi|146191065|emb|CAL75070.1| Putative pyrimidine reductase [Bradyrhizobium sp. ORS278]
Length = 182
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L + G A A + + L+D + + V+G G +PL + +
Sbjct: 109 KQLFLFGSADFAATLMAHDLIDEYRIAINPRVLGGG---APLFKPGQAMKLRLIDSRALA 165
Query: 348 SDVCL-EYIG 356
S V + Y+
Sbjct: 166 SGVVIVRYVP 175
>gi|73539946|ref|YP_294466.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
JMP134]
gi|72117359|gb|AAZ59622.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
JMP134]
Length = 215
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 26/124 (20%)
Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
D E G + + V
Sbjct: 60 NDFVERGFDNIGAWILGRNMFGPVRGPWPDESWRGWWGDKPPYHVPVFVLTHHARPSIEM 119
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + L + + GG + ++ + LVD + L ++G
Sbjct: 120 EGGTTFHFVTEGIDVALARAREAAQGRDVRLGGGVSTIRQYLQAGLVDEMHLAIVPKLLG 179
Query: 322 EGGI 325
G
Sbjct: 180 GGEA 183
>gi|330467920|ref|YP_004405663.1| bifunctional deaminase-reductase domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328810891|gb|AEB45063.1| bifunctional deaminase-reductase domain-containing protein
[Verrucosispora maris AB-18-032]
Length = 197
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA VA + +RL+D ++L+ +V+G G P + + + F V +
Sbjct: 129 GGATVATQLLRARLLDEVLLFTHPVVLGS-GRPLF-DAHDEPLELDLLEQASFDEGVTMH 186
>gi|323488084|ref|ZP_08093336.1| riboflavin biosynthesis protein RibD domain-containing protein
[Planococcus donghaensis MPA1U2]
gi|323398236|gb|EGA91030.1| riboflavin biosynthesis protein RibD domain-containing protein
[Planococcus donghaensis MPA1U2]
Length = 178
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
K++ L + + GG +A F+ + LVD I+ ++G G + + +
Sbjct: 97 CKVVLALKETEGKDIWLYGGGILADPFMKANLVDEYIIGIIPTILGRG--RTLFKGDNPK 154
Query: 336 KNFMCVRRDYFGSDVCLEYIGK 357
+ R L Y K
Sbjct: 155 IDLHLDRATVTDGISMLVYSKK 176
>gi|260943466|ref|XP_002616031.1| hypothetical protein CLUG_03273 [Clavispora lusitaniae ATCC
42720]
gi|238849680|gb|EEQ39144.1| hypothetical protein CLUG_03273 [Clavispora lusitaniae ATCC
42720]
Length = 296
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 27/104 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKD--GIVIGRGVT----AYGGC 52
M ++ ++M+ A + G T VAC+ V + ++ G + G
Sbjct: 1 MDLT-RHFQYMAVATFVAYRAFANGET----PVACVFVHEPSQTILAFGCNDTNRSLNGT 55
Query: 53 PHAEVQAL--------------EEAGEEARGATAYVTLEPCSHY 82
HAE A+ E+ YVT+EPC
Sbjct: 56 RHAEFMAIDKILQENHLLNSSPEKVAAFFSQVVLYVTVEPCVMC 99
>gi|298251269|ref|ZP_06975072.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297545861|gb|EFH79729.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 177
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV-TSLLVEGGAAVAHSFINSR 306
+ + + + + R + ++L++GG+ + + +
Sbjct: 68 WMNSIPKYVVSSTLHHVEWNNSRLIKGTIPEEIQKLKREISRNILIDGGSDLVNLLMRHD 127
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIG 356
L+D L IV+G+G EG ++ V L Y
Sbjct: 128 LIDEYRLLVHPIVLGKG--KRLFREGSPKRELRLREARALSGGVLALVYQP 176
>gi|319784173|ref|YP_004143649.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317170061|gb|ADV13599.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 215
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGR 285
+ DS P + + + + L
Sbjct: 85 RGEWPDDSWKGWWGDNPPYHVPVFVLTHHKREPITMEGGTTFHFVIDGIHSALEQAKAAA 144
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V GG A ++ +L+D + L + +++G G
Sbjct: 145 GGKDVRVGGGVATIRQYLQEKLIDEMHLAIAPVLLGTG 182
>gi|189190852|ref|XP_001931765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973371|gb|EDU40870.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 242
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSRLVDSIILYRSQIVIGEG 323
+L L G+ S+++EGG V + F+ LV+S+I+ + +G+G
Sbjct: 187 WHIILDALKQEGIGSVMIEGGGFVINDFLGPSPAYSLVNSVIVTIAPTWLGKG 239
>gi|302517944|ref|ZP_07270286.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
gi|302426839|gb|EFK98654.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
Length = 295
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ VG + P L + L S TA
Sbjct: 6 YGMNMTLDGYVSAVGDDIGWSGPPGRELFQWWLDHERATGLSLYGRKLWETMSSHWPTAD 65
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEG 294
P + E++ + + + + +L+ +T L + G
Sbjct: 66 RQPGVTPAESEFARIWRDTPRVVFSSTLGEVAGNARLVGGDAVAEITRLKSGDGGPMSIG 125
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
GA +A + + + L+D ++ +++G G P N V F G V
Sbjct: 126 GATLAGAAMRAGLIDEYVIAAHPVLVGG-GTPFFTALDSW-VNLDLVETRTFPGGVVLSR 183
Query: 354 Y 354
Y
Sbjct: 184 Y 184
>gi|163791627|ref|ZP_02186026.1| hypothetical protein CAT7_00675 [Carnobacterium sp. AT7]
gi|159873116|gb|EDP67221.1| hypothetical protein CAT7_00675 [Carnobacterium sp. AT7]
Length = 173
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+++ GG + ++F+ +D I+ +++G G P +
Sbjct: 106 KDIMLFGGGQLVNAFLKENCIDEYIIGLIPVILG-EGRPLFYGG-HPPIELRLEENIVDN 163
Query: 348 SDVCLEYIGK 357
V L+Y +
Sbjct: 164 GIVILKYSKR 173
>gi|320532622|ref|ZP_08033420.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135152|gb|EFW27302.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 176
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V +N + +++ + I +L++L+ L G +
Sbjct: 53 WNTYNQIITELSPDNWVYDNLLTYVFTHREQQDSDKIIFTSDNLEELIKKLKGVEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I+S ++D ++ ++G GI + E + V
Sbjct: 113 ICGGADLVQQAISSDVIDEYLISIVPTILG-NGIKLF-SQNDAEHKLKLINTITNNGIVE 170
Query: 352 LEYIGK 357
L YI +
Sbjct: 171 LNYIRR 176
>gi|284028221|ref|YP_003378152.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283807514|gb|ADB29353.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 187
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 48/181 (26%), Gaps = 11/181 (6%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
L G + + + QE + ++ S TA
Sbjct: 6 YGMNLTLDGYIAAAGDDLGWSAPSDELFQWWLDQELAIGLLMYGRKL-WEEMSSNWPTAD 64
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------G 294
P + + K + +L+T +T L E
Sbjct: 65 QQPGATPAQIEFARNWRDTPKVVFSSTIDKVDWNTRLVTGDAAAEMTRLKAEDGEPMRVA 124
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLE 353
GA +A + + + LVD + +++G G P V F G V
Sbjct: 125 GATLAGAAVRAGLVDEYEIVTHPVLVGG-GTPFFTALDSW-VKLSLVETRTFPGGVVLTR 182
Query: 354 Y 354
Y
Sbjct: 183 Y 183
>gi|186476063|ref|YP_001857533.1| CMP/dCMP deaminase zinc-binding [Burkholderia phymatum STM815]
gi|184192522|gb|ACC70487.1| CMP/dCMP deaminase zinc-binding [Burkholderia phymatum STM815]
Length = 213
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 25/96 (26%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PH---- 54
S D RFM+ + + V ++V+ VI +G G H
Sbjct: 37 FSERDRRFMAL--AQAAAEEARAAGEVPVGAVLVRGDEVIAKGFNHPIGGHDPSAHAEMA 94
Query: 55 --------AEVQALEEAGEEARGATAYVTLEPCSHY 82
E G YVTLEPC
Sbjct: 95 ALRAAALTLE-------NYRLPGCELYVTLEPCLMC 123
>gi|330799923|ref|XP_003287990.1| hypothetical protein DICPUDRAFT_78829 [Dictyostelium purpureum]
gi|325082014|gb|EGC35511.1| hypothetical protein DICPUDRAFT_78829 [Dictyostelium purpureum]
Length = 234
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 23/92 (25%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQAL 60
F M AL + S N I+ ++G ++ + G HAE+ A+
Sbjct: 52 FHENNMRIALNLA------ISVNGRFGAAIINRNGTLLCTAMN--NGTVSKILHAEINAI 103
Query: 61 EEAGEEA----------RGATAYVTLEPCSHY 82
+ G YVT EPC
Sbjct: 104 LNCTDIMAARGIKQSSWEGYYLYVTGEPCPMC 135
>gi|312890966|ref|ZP_07750492.1| bifunctional deaminase-reductase domain protein [Mucilaginibacter
paludis DSM 18603]
gi|311296542|gb|EFQ73685.1| bifunctional deaminase-reductase domain protein [Mucilaginibacter
paludis DSM 18603]
Length = 187
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
KL+ + ++ + GGA + FI L D I L +++G+G L+ E
Sbjct: 107 KLVNERLKPSYKNVWLIGGAKLTKDFIRLNLADEIRLSILPVILGDGT--PFLDLIEQEH 164
Query: 337 NFMCVRRDYF 346
+
Sbjct: 165 ALHLKDVTAY 174
>gi|86358188|ref|YP_470080.1| dihydrofolate reductase protein [Rhizobium etli CFN 42]
gi|86282290|gb|ABC91353.1| probable dihydrofolate reductase protein [Rhizobium etli CFN 42]
Length = 213
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 43/170 (25%), Gaps = 3/170 (1%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDS 234
G R + G+ D+ + + R + P + D+
Sbjct: 32 GPEMFQWFFHTRTFRAMMGKDDGSTGIDEDYASRAMANFGAFILGRNMFGPIRGEWPDDA 91
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGRGVTSLLVE 293
P T + + + L G + +
Sbjct: 92 WKGWWGPNPPYHAPTYVLTHYPREPLVMEGGTTFHFVTGGIHQALDQAKAAAGDKDVKIG 151
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
GG A ++ + L+D + S +V+G+G +F
Sbjct: 152 GGVATVRQYLQAGLIDELHFAVSPVVLGKGEA-MFAGIDLPALDFRVTEH 200
>gi|300784804|ref|YP_003765095.1| cytosine deaminase [Amycolatopsis mediterranei U32]
gi|299794318|gb|ADJ44693.1| cytosine deaminase [Amycolatopsis mediterranei U32]
Length = 152
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY--GGCP--HA 55
MP+ ++ A + + + G ++GRG G P HA
Sbjct: 1 MPIDP--HTLLAVAREEAELGKAEGGV--PIGAALFDSTGTLLGRGHNRRVQDGDPSMHA 56
Query: 56 EVQALEEAGEEA--RGATAYVTLEPCSHYG 83
E A AG R TL PC +
Sbjct: 57 ETAAFRNAGRRPHYRDTIMVTTLSPCWYCS 86
>gi|302541276|ref|ZP_07293618.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptomyces hygroscopicus ATCC 53653]
gi|302458894|gb|EFL21987.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptomyces himastatinicus ATCC 53653]
Length = 158
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 31/99 (31%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPH------- 54
++ D R + + + + ++V DG V+ G H
Sbjct: 1 MTDDDLRHLRRCVELATEALEAGDE--PFGSVLVAADGTVLAEDHNQVAGGDHTRHPEFA 58
Query: 55 -----------AEVQALEEAGEEARGATAYVTLEPCSHY 82
AE A AT Y + E C
Sbjct: 59 LARWAAARLTPAERAA----------ATVYTSGEHCPMC 87
>gi|237651567|ref|YP_002899037.1| putative deoxycytidylate deaminase [Roseophage DSS3P2]
gi|220898037|gb|ACL81295.1| putative deoxycytidylate deaminase [Silicibacter phage DSS3phi2]
Length = 142
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 28/102 (27%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP----------- 53
FD + A S+ + V +I++ D + G G P
Sbjct: 5 FDEWALGLAEAVSKRSR---DPSTKVGAVIIRPDKTIASMGY---NGFPRTMEDKEEWWS 58
Query: 54 ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
H E+ AL A E G T Y T C H +
Sbjct: 59 DRPQKYSRVIHGEMNALLNAKEPVLGMTLYCTHPCCEHCAKH 100
>gi|225055376|gb|ACN80662.1| Tsr4 [Streptomyces laurentii]
Length = 142
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG V+ G HAEV AL A G T VTLEPC
Sbjct: 18 PVGAVVLAPDGSVLATGHNEREATGDPTAHAEVLALRRAAAATGEWRLTGCTLVVTLEPC 77
Query: 80 SHY 82
Sbjct: 78 VMC 80
>gi|220910699|ref|YP_002486009.1| riboflavin biosynthesis protein RibD domain-containing protein
[Cyanothece sp. PCC 7425]
gi|219867471|gb|ACL47808.1| riboflavin biosynthesis protein RibD domain-containing protein
[Cyanothece sp. PCC 7425]
Length = 191
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA +A +RL+D +IL + ++G GIP + R + +
Sbjct: 125 IWLCGGANLATELFANRLIDQLILKVNPFLMGS-GIPLF-SGVIQQTALELTDRKIYNNG 182
Query: 350 VCLEYIG 356
V L Y
Sbjct: 183 VLLLYYK 189
>gi|84494757|ref|ZP_00993876.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]
gi|84384250|gb|EAQ00130.1| hypothetical protein JNB_08164 [Janibacter sp. HTCC2649]
Length = 189
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GG +A + + LVD I Y V G G P + FGS
Sbjct: 124 GGPTLAADALRAGLVDEITAYVMPHVAGGG---LPWLPDGFTSELTLREQRTFGS 175
>gi|145485052|ref|XP_001428535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395621|emb|CAK61137.1| unnamed protein product [Paramecium tetraurelia]
Length = 353
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 37/109 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53
+++ FM A + + +V +IVKD ++ G G P
Sbjct: 208 NWNQYFMHLANVVKQRSNCMKR---AVGVVIVKDSRIVATGY---NGTPYGKQNCWEKGC 261
Query: 54 -------------------HAEVQALEEAG-EEARGATAYVTLEPCSHY 82
HAE A+ E G ++++ Y TL PC
Sbjct: 262 DRCNQNTKQGVDLEKCFCFHAEESAILEIGTKKSKNMVMYTTLFPCLQC 310
>gi|13471784|ref|NP_103351.1| hypothetical protein mll1872 [Mesorhizobium loti MAFF303099]
gi|14022528|dbj|BAB49137.1| mll1872 [Mesorhizobium loti MAFF303099]
Length = 195
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
++V GGA A S I + LVD L+ + V+G G
Sbjct: 128 DIIVFGGAGFASSLIAAGLVDEFQLFVNPAVLGAGRR 164
>gi|226362835|ref|YP_002780613.1| hypothetical protein ROP_34210 [Rhodococcus opacus B4]
gi|226241320|dbj|BAH51668.1| hypothetical protein [Rhodococcus opacus B4]
Length = 233
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 34/144 (23%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ G L D N E
Sbjct: 59 WAGATASWHMRTGPGGSRGLDDYLIRDYDRNIGAEIMGRNKFGPQRGPWEDHEWRGWWGD 118
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
P + +F + + D L + + GGA
Sbjct: 119 EPPFHTPVFVLTHHVRPSFTLSDTTFHFVDTDPATVLAQAREAAQGKDVRLGGGATTIRE 178
Query: 302 FINSRLVDSIILYRSQIVIGEGGI 325
F+++ LVD++ + S I +G G
Sbjct: 179 FLDADLVDTLHVVVSPIDLGSGAR 202
>gi|66812266|ref|XP_640312.1| carbohydrate-binding domain-containing protein [Dictyostelium
discoideum AX4]
gi|60468325|gb|EAL66333.1| carbohydrate-binding domain-containing protein [Dictyostelium
discoideum AX4]
Length = 383
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQALEEA 63
F A++M A+ + N IV K+G ++ G G H EV+A+
Sbjct: 51 FHAKYMRIAINVA------VENNSKFGAAIVHKNGTLMCTGANTGGSRMYHGEVKAIMNC 104
Query: 64 GEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ AT Y T EPC + +F V V +
Sbjct: 105 TDLYGKATWEDHYLYTTGEPCPMCSAAAMWTKFDKVIFASYVSVMYCERCFNQLPMDANE 164
Query: 119 LSQKGIIVDRM 129
+ + G ++
Sbjct: 165 IFKLGYGINHN 175
>gi|218515307|ref|ZP_03512147.1| cytosine deaminase protein [Rhizobium etli 8C-3]
Length = 170
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 33/94 (35%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------AYGG---------CP 53
RFM AL + G P IG V + G
Sbjct: 8 RFMEMALEEA-RAAGERGEVP------------IGAVVVVDDIAVSRSGNRTRELNDVTA 54
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
HAE+ A+ A E GA YVTLEPC+
Sbjct: 55 HAEIAAIRLACEALGQERLAGADLYVTLEPCTMC 88
>gi|256377450|ref|YP_003101110.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
gi|255921753|gb|ACU37264.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
Length = 186
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 48/178 (26%), Gaps = 10/178 (5%)
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ + + G + P + + + L S TA P
Sbjct: 8 MNLSVDGYVAAPDGDLGWSSPSDELFEWWSERERAVGLFLYGRGLWEAMSSHWPTADRLP 67
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL-------LVEGGAA 297
E K D +++T +T L + GGA
Sbjct: 68 GANAAEVAFARNWRDTPKVVFTSTALDVDWNTRVVTGDAVAEITRLKAGDGGPMRVGGAR 127
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ + + + LVD + +++G G P +G + G V Y
Sbjct: 128 LGGAAMRAGLVDEYEIVTHPVLLGGGDPFFPALDGRAP--LELLETRTVPGGVVVSRY 183
>gi|241205237|ref|YP_002976333.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240859127|gb|ACS56794.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 213
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 2/118 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
D+ P + + + L
Sbjct: 84 RGDWPYDAWKGWWGPNPPYHAPTYILTHYPREPIVMEGGTTFHFVTGGVEEALDKAKTAA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG + ++ + L+D + S +V+G+G F
Sbjct: 144 GGKDVKIGGGVSTVRQYLQAGLIDELHFAVSPVVLGKGEA-MFTGIDLPALGFRFAEH 200
>gi|317509323|ref|ZP_07966943.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
gi|316252379|gb|EFV11829.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
Length = 148
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 13 AALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEAG--E 65
A + GL + + +DG ++GRG HAE A AG
Sbjct: 7 LATAVAEARAGLAEGGVPIGAALFTRDGKLLGRGHNRRVQWDDPAIHAETDAFRAAGRQR 66
Query: 66 EARGATAYVTLEPCSHYG 83
+ R TL PC +
Sbjct: 67 DYRDTVMVTTLSPCWYCS 84
>gi|238064036|ref|ZP_04608745.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237885847|gb|EEP74675.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 185
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-E 353
G +A I + LVD L+ + V+G G P + V F S +
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFITTSVVGGGKRFFP---DGVRLELELVEERAFDSGLIYAR 181
Query: 354 YI 355
Y
Sbjct: 182 YR 183
>gi|126347662|emb|CAJ89376.1| putative DNA-binding protein [Streptomyces ambofaciens ATCC 23877]
Length = 216
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+++ GG A S + + LVD++ L+ + +V+G G +PL G + +
Sbjct: 149 RDVILMGGGATVGSALEAGLVDALTLHLAPVVLGGG---TPLFTGGTPRTLVQRSV 201
>gi|239820426|ref|YP_002947611.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus S110]
gi|239805279|gb|ACS22345.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus S110]
Length = 214
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 2/108 (1%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDL 275
+ S + P + +
Sbjct: 74 MGRNMFGGGPGPWSTTAPWDGWWGRNPPFHHPVFVLTHHARDPLVMEGGTRFSFVTDGIE 133
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L G + + GGA A ++ + LVD + L+ + I++G G
Sbjct: 134 SALDQARRAAGGKDVALAGGARAAQQYLKAGLVDEMQLHLAPILLGGG 181
>gi|116070709|ref|ZP_01467978.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. BL107]
gi|116066114|gb|EAU71871.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. BL107]
Length = 157
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHA 55
M + +M L+ ++ + GL+ P VA +++ DG IG G T HA
Sbjct: 1 MDQTDRFHEWMKVLLQRAQVN-GLSGEVP-VAAVVLGPDGRAIGHGRNRRETEQDPLGHA 58
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ AL +A VTLEPC
Sbjct: 59 ELVALRQAALILGDWRFNQCCLIVTLEPCPMC 90
>gi|160879511|ref|YP_001558479.1| deaminase-reductase domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160428177|gb|ABX41740.1| bifunctional deaminase-reductase domain protein [Clostridium
phytofermentans ISDg]
Length = 173
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + F+ + +D I+ ++G+ G P L +
Sbjct: 106 KNIYLFGGGGLIDHFVKANAIDEYIVGIIPTILGK-GRPLFLGNNP-TIQLHLDKYTVSD 163
Query: 348 SDVCLEYIGK 357
L Y +
Sbjct: 164 GVTVLHYSRR 173
>gi|291614782|ref|YP_003524939.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291584894|gb|ADE12552.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 217
Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 32/155 (20%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
+ D G + D R G
Sbjct: 29 GEGGMKLHEWVFPTRTFQQMHGDKNAGGTTGIDDDFAARGVRNIGAWILGRNMFGPIRGP 88
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ K V + + L
Sbjct: 89 WPDTNWKGWWGDNPPYHTPVFVLTHHPRESITMEGGTTFHFVTDGIFSALQRAQEAANGL 148
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ V GGA ++ + L+D + + S I++G G
Sbjct: 149 DVRVGGGAETIRQYLLAGLIDEMHIAISPILLGSG 183
>gi|227893607|ref|ZP_04011412.1| deaminase-reductase domain protein [Lactobacillus ultunensis DSM
16047]
gi|227864467|gb|EEJ71888.1| deaminase-reductase domain protein [Lactobacillus ultunensis DSM
16047]
Length = 190
Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ + V L V GG + F+ + LVD I + V G G P+
Sbjct: 140 AMEILNKEFRVDRLAVVGGGRINGGFLKAGLVDEISILVGPGVDGRTGQPA 190
>gi|331000061|ref|ZP_08323756.1| conserved domain protein [Parasutterella excrementihominis YIT
11859]
gi|329572945|gb|EGG54565.1| conserved domain protein [Parasutterella excrementihominis YIT
11859]
Length = 229
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL------EKNFM 339
G+ + ++GG V +F N +L+D + L V G +P+ E G F
Sbjct: 151 GIHRISLQGGRLVNGTFANEKLIDKLSLVVIPFVDSSGSVPTTFETGSFFKHAISPIEFK 210
Query: 340 CVRRDYFGSD-VCLEYIGK 357
+ + L Y K
Sbjct: 211 LKEIQKIEPEGLWLFYERK 229
>gi|296128206|ref|YP_003635456.1| bifunctional deaminase-reductase domain protein [Cellulomonas
flavigena DSM 20109]
gi|296020021|gb|ADG73257.1| bifunctional deaminase-reductase domain protein [Cellulomonas
flavigena DSM 20109]
Length = 188
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GGA + LVD ++L + +G G PL + + FG V +
Sbjct: 124 GGAILGAEAFRHGLVDEVVLMLCPVAVGGGKPALPLG---VRLGLELREQRGFGDGTVLV 180
Query: 353 EY 354
Y
Sbjct: 181 RY 182
>gi|168333324|ref|ZP_02691608.1| hypothetical protein Epulo_00570 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 176
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
GGA + F N L+D + I++G G + N + + V L+
Sbjct: 115 GGANIISQFHNENLIDEYWITIIPIILGNGLR--LFNAKNIAVNLKLLATRSYNGIVDLK 172
Query: 354 YIGK 357
Y +
Sbjct: 173 YKKQ 176
>gi|108757462|ref|YP_629509.1| riboflavin biosynthesis protein RibD domain-containing protein
[Myxococcus xanthus DK 1622]
gi|108461342|gb|ABF86527.1| RibD domain protein [Myxococcus xanthus DK 1622]
Length = 183
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG A A + LVD ++L + +++G G + + + ++ + + G
Sbjct: 111 DIYLSGGGAFAGLLLAEGLVDEVLLKMNPLILGSGILLASSLKQVVDLDLKSTKVYANGV 170
Query: 349 DVCLEY 354
V L Y
Sbjct: 171 -VLLRY 175
>gi|318056434|ref|ZP_07975157.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
SA3_actG]
gi|318075459|ref|ZP_07982791.1| bifunctional deaminase-reductase domain protein [Streptomyces sp.
SA3_actF]
Length = 205
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
+ + + PV +VT P L+ + + + +
Sbjct: 74 RRMYDHGEKAWGEEPPFHVPVFVVTHRPRPSRRLSDGTSFEFVTAGVAAAVAQAVAEARA 133
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG + V GG + + + ++D + L+ +++G G P + + + R +
Sbjct: 134 RG-GDVAVMGGGQIVSGALAAGVLDELRLHVVPVLLGG-GRPLFAQPLHPARVLETTRAE 191
Query: 345 Y 345
Sbjct: 192 M 192
>gi|148553413|ref|YP_001260995.1| deaminase-reductase domain-containing protein [Sphingomonas
wittichii RW1]
gi|148498603|gb|ABQ66857.1| bifunctional deaminase-reductase domain protein [Sphingomonas
wittichii RW1]
Length = 176
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G +AH + LVD LY +V+G G P V D G + L
Sbjct: 117 GPELAHGLADLGLVDEYRLYVHPVVLGG-GKPFFAGPRS---RLRLVASDRIGESVIRLS 172
Query: 354 YIG 356
Y+
Sbjct: 173 YVP 175
>gi|323333035|gb|EGA74437.1| Tad2p [Saccharomyces cerevisiae AWRI796]
Length = 244
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQALEEAG 64
M A+R +R+ + T VAC+ V G V+ G+ G HAE +++
Sbjct: 1 MRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58
Query: 65 EEA---------RGATAYVTLEPCSHY 82
+ T YVT+EPC
Sbjct: 59 AMLGSRGVVDVFKDITLYVTVEPCIMC 85
>gi|323308420|gb|EGA61665.1| Tad2p [Saccharomyces cerevisiae FostersO]
gi|323354467|gb|EGA86306.1| Tad2p [Saccharomyces cerevisiae VL3]
Length = 244
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQALEEAG 64
M A+R +R+ + T VAC+ V G V+ G+ G HAE +++
Sbjct: 1 MRTAVRLARYALDHDET--PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58
Query: 65 EEA---------RGATAYVTLEPCSHY 82
+ T YVT+EPC
Sbjct: 59 AMLGSRGVVDVFKDITLYVTVEPCIMC 85
>gi|299136696|ref|ZP_07029879.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298601211|gb|EFI57366.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 193
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+L G + + + + L D ++L+ +++G G EG ++F +
Sbjct: 122 VLW-GSSTLTSTLLEHGLADEVLLFVYPVLLGTG--KRFFAEGTPARSFELISSKAL 175
>gi|226363071|ref|YP_002780853.1| hypothetical protein ROP_36610 [Rhodococcus opacus B4]
gi|226241560|dbj|BAH51908.1| hypothetical protein [Rhodococcus opacus B4]
Length = 212
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 2/127 (1%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
R D P V + + D +
Sbjct: 72 MGRRKFGPQTGDWPDDGWRGWWGDEPPFRTPVFVMSHHPRPSIDFPNGTSFHFVDAPPRE 131
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GG + F+ + L+D + L I +G G+ ++
Sbjct: 132 VLRLAQDAAGGQDVRIGGGPSTVRQFLEADLIDFMHLVIVPITLG-RGVSLWEGLEGIQD 190
Query: 337 NFMCVRR 343
F
Sbjct: 191 RFTIETV 197
>gi|91773324|ref|YP_566016.1| bifunctional deaminase-reductase-like protein [Methanococcoides
burtonii DSM 6242]
gi|91712339|gb|ABE52266.1| Dihydrofolate reductase [Methanococcoides burtonii DSM 6242]
Length = 174
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V GG V F++S+L+D II+ I++G GIP E + + +
Sbjct: 105 KDIWVLGGGEVVREFLDSKLIDEIIIGVMPILLG-EGIPLF-REYAHQTELKLLDVKQYE 162
Query: 348 SD-VCLEY 354
V L Y
Sbjct: 163 KGMVQLHY 170
>gi|317508050|ref|ZP_07965736.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
gi|316253646|gb|EFV13030.1| cytidine and deoxycytidylate deaminase zinc-binding protein
[Segniliparus rugosus ATCC BAA-974]
Length = 196
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRG--VTAYGGCPHAEVQAL 60
+ M A+ + + +IV+ D ++ +G H EV AL
Sbjct: 48 ATHEANMRKAMHAAAGN-----PRLPFGSVIVRTSDNAMLAKGVNHNTENPMWHGEVVAL 102
Query: 61 EEAGEEARGA-----TAYVTLEPCSHY 82
+ A T Y T EPC+
Sbjct: 103 NDYTARHGNADWRDVTLYTTGEPCAMC 129
>gi|115746630|ref|XP_785961.2| PREDICTED: similar to DCMP deaminase, partial [Strongylocentrotus
purpuratus]
gi|115963430|ref|XP_001194861.1| PREDICTED: similar to DCMP deaminase, partial [Strongylocentrotus
purpuratus]
Length = 122
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 31/85 (36%)
Query: 31 VACLIVKD-GIVIGRGVTAYGGCP--------------------------HAEVQA-LEE 62
V IV D ++G G G P HAE+ A + +
Sbjct: 1 VGACIVNDENKIVGIGY---NGMPRGCSDEALPWQRKNDDWLETKIPYVCHAEMNAVMNK 57
Query: 63 AGEEARGATAYVTLEPCSHYGRSPP 87
+G T YV L PC+ +
Sbjct: 58 NCASVKGCTIYVALFPCNECTKVIM 82
>gi|116748688|ref|YP_845375.1| zinc-binding CMP/dCMP deaminase [Syntrophobacter fumaroxidans
MPOB]
gi|116697752|gb|ABK16940.1| CMP/dCMP deaminase, zinc-binding [Syntrophobacter fumaroxidans
MPOB]
Length = 170
Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPH 54
+D F+ A + L+ + L+V+D +I G G PH
Sbjct: 2 DWDRYFLEIATAVANNSKCLSRK---IGALLVRDKSIISTGYNGPPRGVPH 49
>gi|329947524|ref|ZP_08294716.1| guanine deaminase family protein [Actinomyces sp. oral taxon 170
str. F0386]
gi|328524214|gb|EGF51287.1| guanine deaminase family protein [Actinomyces sp. oral taxon 170
str. F0386]
Length = 160
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 29 PSVACLIVKDGIVIGR-GVTA----YGGCPHAEVQALEEA----GE-EARGATAYVTLEP 78
P V +IV I GV HAE+ A+ +A GE + RG T T EP
Sbjct: 29 PFVG-VIVDGQQAISEFGVNRVQETGDPSAHAEIVAIRDALSSSGETDLRGTTLLATGEP 87
Query: 79 CSHY 82
C
Sbjct: 88 CGMC 91
>gi|330817316|ref|YP_004361021.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia gladioli
BSR3]
gi|327369709|gb|AEA61065.1| CMP/dCMP deaminase, zinc-binding protein [Burkholderia gladioli
BSR3]
Length = 217
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHA 55
P + D R+M AL + G V +IV+ VI RG G HA
Sbjct: 29 PAAERDRRYMRMALAAAEAARAAGEV----PVGAVIVRGDEVIARGFNHPIGGHDPSAHA 84
Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPP 87
E+ AL A + G YVTLEPC +
Sbjct: 85 EMAALRAAAQALGNYRLPGCELYVTLEPCLMCSGAIM 121
>gi|256423296|ref|YP_003123949.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
gi|256038204|gb|ACU61748.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
Length = 188
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 7/141 (4%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
M SK + VL+ + + + + D++
Sbjct: 53 WQMMEGYWPTAGDEPNASKHDIEHSA----WYKKAKKVVLSKSMQNEQLPNTTFIGEDVE 108
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L T +L+ G + HS + L+D L+ + I++ GIP + +
Sbjct: 109 DRIKTLKQADGTEILIFGSPSATHSLLQYDLIDEFWLFVNPILL-SKGIPLF-KNVTEKT 166
Query: 337 NFMCVRRDYF-GSDVCLEYIG 356
V F VC+ Y
Sbjct: 167 PLTLVSSKTFTNGVVCMHYKK 187
>gi|119899283|ref|YP_934496.1| DNA-binding protein [Azoarcus sp. BH72]
gi|119671696|emb|CAL95609.1| DNA-binding protein [Azoarcus sp. BH72]
Length = 216
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 5/115 (4%)
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
+ P + ++ P+ +
Sbjct: 74 WILGRNMFGPVRGPWPDLDWKGWWGDEPPYHVPVFVLTHHPRPPLQMKGGTVFHFVGDIH 133
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
D + + + GG A ++ + L+D + + S +++G G
Sbjct: 134 DALAQARAAAAG-----QDVRIGGGPATIRQYLRAGLIDELHIALSPVLLGRGEA 183
>gi|304403907|ref|ZP_07385569.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
gi|304346885|gb|EFM12717.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9]
Length = 176
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 30/123 (24%), Gaps = 45/123 (36%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53
+D FM A + V ++V+ ++G G P
Sbjct: 9 SRKDWDTYFMDIAYMVATRSRCNRRH---VGAVLVQGKKLLGTAY---NGAPMGVEDCLE 62
Query: 54 ------------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
HAE L + G+T YVT +PC
Sbjct: 63 AGCMIVEEYELSAVEGTERMIKKERCIRTIHAEQNLLLFTDRIDREGSTVYVTDQPCWTC 122
Query: 83 GRS 85
Sbjct: 123 ANM 125
>gi|15838349|ref|NP_299037.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella
fastidiosa 9a5c]
gi|9106818|gb|AAF84557.1|AE003997_13 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella
fastidiosa 9a5c]
Length = 237
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333
L + G+ +++ GG + S++ LVD + L + PS
Sbjct: 152 ALHKLATLFGMERVMIGGGGVLNWSYLQDGLVDELSLLMAP------DAPSLFTAKEPLT 205
Query: 334 --LEKNFMCVRRDYF-GSDVCLEYIGK 357
++F + G + Y
Sbjct: 206 RVQPRSFTLIEAKPLEGGTIWARYKVN 232
>gi|40713146|emb|CAE53346.1| hypothetical protein [Actinoplanes teichomyceticus]
gi|45580845|emb|CAG15005.1| dihydrofolate reductase [Actinoplanes teichomyceticus]
Length = 179
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA VA + LVD I++Y +++G+G SP ++ + G+ L +
Sbjct: 118 GADVAAQCLRRGLVDEILVYVVPVLLGDGVRFSPPSLDRID--LEPLSNTRSGAVTMLRF 175
Query: 355 IGKN 358
+
Sbjct: 176 RVRK 179
>gi|158318378|ref|YP_001510886.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
gi|158113783|gb|ABW15980.1| bifunctional deaminase-reductase domain protein [Frankia sp.
EAN1pec]
Length = 217
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 1/129 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + V K + D +
Sbjct: 75 MGRNKFGPQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMKGGTTFHFIDATPQE 134
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GG + F+ + L+D + + I++G G+ +EK
Sbjct: 135 ALRQAREAAGGLDVRIGGGPTMVRDFLAADLIDHLHVAVVPILLG-RGVRLWEGLEEMEK 193
Query: 337 NFMCVRRDY 345
F
Sbjct: 194 RFTVESTTT 202
>gi|152966637|ref|YP_001362421.1| bifunctional deaminase-reductase domain protein [Kineococcus
radiotolerans SRS30216]
gi|151361154|gb|ABS04157.1| bifunctional deaminase-reductase domain protein [Kineococcus
radiotolerans SRS30216]
Length = 212
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V+GG V SF+ + LV I + +++G G+P + +
Sbjct: 142 GARRVYVDGG-QVVQSFLAAGLVQEITITTVPVLLG-EGLPLF-GRLGADVDLQHRATTV 198
Query: 346 FG 347
G
Sbjct: 199 LG 200
>gi|269795846|ref|YP_003315301.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
gi|269098031|gb|ACZ22467.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
Length = 196
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GA + S + + LVD + +V+G G P V F G V
Sbjct: 133 AGATLGRSAMRAGLVDEYAVVTHPVVLGG-GAPFFAARDRW-LRLDLVETRTFDGGVVLT 190
Query: 353 EY 354
Y
Sbjct: 191 RY 192
>gi|260464050|ref|ZP_05812245.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259030221|gb|EEW31502.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 216
Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 38/145 (26%), Gaps = 4/145 (2%)
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDC 272
+ E L + P+
Sbjct: 48 MDELFSKPFALLLGRRTYDIFAAYWPYQKDPIADAFNPATKYVATHRPDTLTWQNTQSLG 107
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
D+ + L LL++G A + + + + L+D I L +++G+G
Sbjct: 108 EDIIATVRRLSQEDGPDLLIQGSADLIQTLLANGLIDEIRLMIFPLLLGKG--KRLFGGD 165
Query: 333 YLEKNFMCVRRDYFGSDVCL-EYIG 356
+ F + + V + Y
Sbjct: 166 AMPAAFKLAKSQATSTGVIIATYER 190
>gi|270261795|ref|ZP_06190067.1| hypothetical protein SOD_b00020 [Serratia odorifera 4Rx13]
gi|270043671|gb|EFA16763.1| hypothetical protein SOD_b00020 [Serratia odorifera 4Rx13]
Length = 185
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++T L G L ++GG F+ + L++ + + R +++G GIP E+
Sbjct: 101 AIVTRLANEGCRHLYIDGG-NCVQRFLQAGLINELTITRVPLLLGS-GIPLF-GVVGAEQ 157
Query: 337 NFMCVRRDYFGS 348
+ + +
Sbjct: 158 QLHLIAATHSDN 169
>gi|66824141|ref|XP_645425.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
[Dictyostelium discoideum AX4]
gi|60473538|gb|EAL71481.1| CMP/dCMP deaminase, zinc-binding domain-containing protein
[Dictyostelium discoideum AX4]
Length = 224
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 13/132 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQALEE 62
+F ++M A+ + N IV K+G + GV G H EV+A+
Sbjct: 49 AFHEKYMKIAIDVA------VENNSKFGAAIVHKNGTLACTGVNIGGSRMYHGEVKAIMN 102
Query: 63 AGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ AT Y T EPC + +F V +
Sbjct: 103 CTSKYAKATWEDYYMYTTGEPCPMCSAAIMWTKFQKVIFASYVSNMYCERCFNQLPMDSN 162
Query: 118 WLSQKGIIVDRM 129
+ + G ++
Sbjct: 163 EIFKLGYGINHN 174
>gi|330469529|ref|YP_004407272.1| bifunctional deaminase-reductase domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328812500|gb|AEB46672.1| bifunctional deaminase-reductase domain protein [Verrucosispora
maris AB-18-032]
Length = 226
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V GG + + + L+D L+ + +V+G G+ + ++ F +
Sbjct: 139 GGKDVAVSGGGTLFRQVLRAGLLDEFELHIAPVVLG-TGMRLFDADLDVD-EFEAIELTP 196
>gi|116074668|ref|ZP_01471929.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. RS9916]
gi|116067890|gb|EAU73643.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. RS9916]
Length = 167
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEE 62
+M L+ + +G P V+ L++ G IG G HAE+ A+ +
Sbjct: 8 RFWMGLLLQRAE-AIGRQGEVP-VSALVLDGKGRCIGFGGNTRERDQDPLGHAELVAIRQ 65
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A T VTLEPC
Sbjct: 66 ATVLRGDWRLNDCTLLVTLEPCPMC 90
>gi|331004400|ref|ZP_08327873.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae oral taxon 107 str. F0167]
gi|330411130|gb|EGG90549.1| riboflavin biosynthesis protein RibD domain-containing protein
[Lachnospiraceae oral taxon 107 str. F0167]
Length = 176
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V +N + +++ + I +L++L+ L G +
Sbjct: 53 WNTYNQIITELSPDNWVYDNLLTYVFTHREQQDSDKIIFTSDNLEELIKKLKGVEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I+S ++D ++ ++G GI + E + V
Sbjct: 113 ICGGADLVQQAISSDVIDEYLISIIPTILG-NGIKLF-SQNDAEHKLKLINTIKNNGIVE 170
Query: 352 LEYIGK 357
L YI +
Sbjct: 171 LNYIRR 176
>gi|13472266|ref|NP_103833.1| hypothetical protein mlr2503 [Mesorhizobium loti MAFF303099]
gi|14023011|dbj|BAB49619.1| mlr2503 [Mesorhizobium loti MAFF303099]
Length = 224
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 4/145 (2%)
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDC 272
+ E L + P+
Sbjct: 56 MDELFSKPFTLLLGRRTYDIFTAYWPYQKDPIADAFNPATKYVATHRPDTLTWQNTQWLG 115
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
D+ L L + LL++ A + + + + L+D I L +++G+G +G
Sbjct: 116 EDIVAALRRLSKQDGPDLLIQRSADLIQTLLANGLIDEIRLMIFPLLLGKG--KRLFGDG 173
Query: 333 YLEKNFMCVRRDYFGSDVCL-EYIG 356
+ F V+ + V + Y
Sbjct: 174 AMPAAFKLVKSQTSSTGVIIATYER 198
>gi|325183042|emb|CCA17497.1| riboflavinspecific deaminase/GTP cyclohydrolase II putative [Albugo
laibachii Nc14]
Length = 219
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR----LVDSIILYRS 316
+ L + +L G S++VEGGA + S + + LV +I+ +
Sbjct: 120 CESICTSEGAQHVHLSRAFELLHNYGFESIMVEGGAGIITSCLREQTIFSLVSLVIITIA 179
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
I IG + + + D+ L
Sbjct: 180 PIFIGGVHSVNSILSSSNFPRLRYTQCIKMDEDMVL 215
>gi|326432789|gb|EGD78359.1| deoxycytidylate deaminase [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 34/101 (33%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH---------- 54
++ FM+ A ++ IV + ++G G G P
Sbjct: 21 WEDYFMAVAFLSAQRSK---DPESQFGACIVNSENKIVGIGY---NGMPRGCSDDKLPWR 74
Query: 55 ----------------AEVQAL-EEAGEEARGATAYVTLEP 78
AE+ A+ RG YV P
Sbjct: 75 SQGDSVLDTKYPFVCQAEMNAILNRNSSSIRGCRIYVMQFP 115
>gi|184201786|ref|YP_001855993.1| guanine deaminase [Kocuria rhizophila DC2201]
gi|183582016|dbj|BAG30487.1| guanine deaminase [Kocuria rhizophila DC2201]
Length = 170
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%)
Query: 30 SVACLIVKDGIVIGRGVTAYG-------GCPHAEVQALEEAG-----EEARGATAYVTLE 77
L+V GR TA HAEV A+ A + GAT Y + E
Sbjct: 37 PFGALLVTAD---GREFTAVNRVTADNDPTAHAEVCAIRAACSALGTHDLGGATLYSSCE 93
Query: 78 PCSHY 82
PC
Sbjct: 94 PCPMC 98
>gi|284988759|ref|YP_003407313.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062004|gb|ADB72942.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 212
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G + + + + LVD + L + +V+G+G +G + ++ +
Sbjct: 128 LQVHGSPGLVQTLLRADLVDELRLVVAPVVLGQG--KRLFGDGAIAWSWRLTSSAATPTG 185
Query: 350 VCL-EYIG 356
V L Y
Sbjct: 186 VLLCTYRR 193
>gi|158318357|ref|YP_001510865.1| DNA-binding protein [Frankia sp. EAN1pec]
gi|158113762|gb|ABW15959.1| DNA-binding protein [Frankia sp. EAN1pec]
Length = 200
Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 1/119 (0%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P L +F + + D + L
Sbjct: 69 PTRGPWPDHEWKGWWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHEALKQAKAA 128
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GGA F+++ L+D + + + +G G+ L F R
Sbjct: 129 AAGRDVRIGGGATTIREFLDADLIDEMHIAVAPCELGS-GLRLWDSPDELTDRFHVERV 186
>gi|329928361|ref|ZP_08282232.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
gi|328937918|gb|EGG34323.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
Length = 191
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 11/136 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + + P E + + + + + +L+
Sbjct: 47 TVIWGRGTYQMMHSYWPSVPSNPSASQHELNHAEWIEKTAKVVFSTTLENVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + +L ++ G AH + L+D + S ++IG G+P +
Sbjct: 107 EDVEEEIKNLKQQPGKDMVILGSPRFAHYLMQLDLIDEYKITVSPVLIGS-GLPLF-QGL 164
Query: 333 YLEKNFMCVRRDYFGS 348
+ N + F S
Sbjct: 165 REKINLKLIENTTFDS 180
>gi|328957760|ref|YP_004375146.1| putative oxidoreductase [Carnobacterium sp. 17-4]
gi|328674084|gb|AEB30130.1| putative oxidoreductase [Carnobacterium sp. 17-4]
Length = 191
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+++ GG + ++F+ + +D I+ +++G G P Y
Sbjct: 124 KDIMLFGGGKLINTFLQAECIDEYIIGLIPVILGA-GRPLFYGG-YPPIELKLEEYMVDK 181
Query: 348 SDVCLEYIGK 357
V L Y+ +
Sbjct: 182 GIVILRYVNR 191
>gi|319781928|ref|YP_004141404.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167816|gb|ADV11354.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 176
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
+ + +R + + + + +P ++ +
Sbjct: 15 YVDHQKMPSGPTIFRHWIEQVRNLSGSVYGRGMYEVMRYWDEDSPEWSAEAHEFAAAWRS 74
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSII 312
K ++ L+ V + L E G +A S + LVD+
Sbjct: 75 QPKWVVSRSLKSAGPNATLVADDVEAVIRGLKAELVGEISVSGPGLARSLTDLGLVDAYQ 134
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
LY V+G G P V D G D + L Y+
Sbjct: 135 LYLHPFVLGH-GKPFFAGPR---PPLRFVASDLIGDDVIRLTYVP 175
>gi|291086751|ref|ZP_06571654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
M62/1]
gi|291076832|gb|EFE14196.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium sp.
M62/1]
Length = 233
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+ + G+ +L++ GG + SF+ + + D + + + G P+ E
Sbjct: 141 YEIAMRKLKELFGIETLMLGGGGVLNWSFMQAGMCDEVSIVMTAAADGSSETPALFETRG 200
Query: 334 -----LEKNFMCVRRD-YFGSDVCLEYIGK 357
F + GS V L Y K
Sbjct: 201 GLASDSPVRFQLEHLEIKEGSSVWLRYKVK 230
>gi|119487290|ref|ZP_01621041.1| hypothetical protein L8106_21237 [Lyngbya sp. PCC 8106]
gi|119455845|gb|EAW36980.1| hypothetical protein L8106_21237 [Lyngbya sp. PCC 8106]
Length = 172
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
V + ++K I ++ +L+ L + + GGA +A +
Sbjct: 59 EGKTNPYPMMKSYVFSRTIKEKPDENIEIVSENILELVDSLKQEMGKDIYLCGGANLATT 118
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
N+ L+D +I+ + ++G GIP + + + V +
Sbjct: 119 LFNANLIDEVIIKLNPFLMGS-GIPLF-SGKIQQTALELTHTKIYDNGVVFLFY 170
>gi|327354664|gb|EGE83521.1| DRAP deaminase [Ajellomyces dermatitidis ATCC 18188]
Length = 299
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 18/73 (24%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV----------------KDGIVIGRGVT-AY 49
++ A L ++ TN V +++ ++ G T
Sbjct: 24 HLHYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASATTETTTQTYADTILSTGYTLEL 82
Query: 50 GGCPHAEVQALEE 62
G HAE ALE+
Sbjct: 83 PGNTHAEQCALEK 95
>gi|291299778|ref|YP_003511056.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290568998|gb|ADD41963.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 192
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G+ G +P+ +G + + + + L
Sbjct: 126 GSLSLNRALLGAGLVDRVQVTLFPVITGQTGA-NPIFKGAADFDLELIDSRTLDGHIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 VYRP 188
>gi|239615513|gb|EEQ92500.1| DRAP deaminase [Ajellomyces dermatitidis ER-3]
Length = 299
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 18/73 (24%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV----------------KDGIVIGRGVT-AY 49
++ A L ++ TN V +++ ++ G T
Sbjct: 24 HLHYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASTTTETTTPTYADTILSTGYTLEL 82
Query: 50 GGCPHAEVQALEE 62
G HAE ALE+
Sbjct: 83 PGNTHAEQCALEK 95
>gi|261199478|ref|XP_002626140.1| DRAP deaminase [Ajellomyces dermatitidis SLH14081]
gi|239594348|gb|EEQ76929.1| DRAP deaminase [Ajellomyces dermatitidis SLH14081]
Length = 299
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 18/73 (24%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV----------------KDGIVIGRGVT-AY 49
++ A L ++ TN V +++ ++ G T
Sbjct: 24 HLHYLRACLSLAQKSPPK-PTNFRVGAILLSRTLHASATTETTTQTYADTILSTGYTLEL 82
Query: 50 GGCPHAEVQALEE 62
G HAE ALE+
Sbjct: 83 PGNTHAEQCALEK 95
>gi|256390312|ref|YP_003111876.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256356538|gb|ACU70035.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 190
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G A + H+ ++ L+D L +++G G + V + +G+
Sbjct: 122 IIVHGSATLNHALSDAGLIDRYHLLVFPLLLGA-GKRLFSTSDKDAQKLKLVESEAYGNG 180
Query: 350 V 350
+
Sbjct: 181 I 181
>gi|229822600|ref|YP_002884126.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229568513|gb|ACQ82364.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 181
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + E V++ D + +L + ++V
Sbjct: 59 YWPLQTDDQTGITQELNEVQKYVVSSTMTDPEWQNSSVLAGDWIAQVRVLKEQEGRDIVV 118
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-C 351
G + H+ I S LVD L+ +V G G P +G+ V F S V
Sbjct: 119 TGSITLTHALIESGLVDEYRLFVYPVVQGRGRRLFP--DGHEVPRLRLVEARGFPSGVSL 176
Query: 352 LEY 354
L Y
Sbjct: 177 LRY 179
>gi|119718373|ref|YP_925338.1| hypothetical protein Noca_4154 [Nocardioides sp. JS614]
gi|119539034|gb|ABL83651.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
JS614]
Length = 230
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L +L RG + L EGG + + + + D + ++ P + L+
Sbjct: 147 LKQVLADRGWANQLCEGGPHLLRDLLAAGVADELCTTTVPRLVAGEH-PRITQGPPLDVP 205
Query: 338 FMCV 341
Sbjct: 206 LRLH 209
>gi|300858611|ref|YP_003783594.1| hypothetical protein cpfrc_01194 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686065|gb|ADK28987.1| hypothetical protein cpfrc_01194 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206323|gb|ADL10665.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
[Corynebacterium pseudotuberculosis C231]
gi|302330880|gb|ADL21074.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
[Corynebacterium pseudotuberculosis 1002]
gi|308276565|gb|ADO26464.1| Riboflavin biosynthesis protein RibD C-terminal domain protein
[Corynebacterium pseudotuberculosis I19]
Length = 265
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
G + EGG ++ + ++L+D + L + ++
Sbjct: 183 KSGFARISCEGGPSLYRKLLEAQLIDILHLTIAPVI 218
>gi|300773271|ref|ZP_07083140.1| riboflavin biosynthesis protein RibD domain protein
[Sphingobacterium spiritivorum ATCC 33861]
gi|300759442|gb|EFK56269.1| riboflavin biosynthesis protein RibD domain protein
[Sphingobacterium spiritivorum ATCC 33861]
Length = 187
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 42/157 (26%), Gaps = 6/157 (3%)
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
+ ++ S + I PV ND
Sbjct: 33 CIMDEDMDFAGFMSGIDTIFYGRVSYDAWGNYQPETSADPVEKQLWNDIHSKQKFVFSSQ 92
Query: 265 INIIYCDCRDLKKLLTILVG---RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+ + +G + + GGA++ SFI L+D + + +G
Sbjct: 93 TRADEHATFIPSDVAQRVSEIKAQGGKDIWLYGGASLIRSFIQLGLIDIYRISVHPVALG 152
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357
G E +R + F S V L Y K
Sbjct: 153 SG--KPLFENLKDRVQLNLIRTNTFKSGVVQLIYEQK 187
>gi|159471219|ref|XP_001693754.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283257|gb|EDP09008.1| predicted protein [Chlamydomonas reinhardtii]
Length = 143
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 30 SVACLIVKDG--IVIGRGVTA----YGGCPHAEVQAL-----EEAGEEARGATAYVTLEP 78
V ++V V+ G HAE+ L G T YVTLEP
Sbjct: 18 PVGAVLVAADGATVLAAGHNRVHRLRSPLAHAEMLCLAAGAARSRAWRLLGTTLYVTLEP 77
Query: 79 CSHY 82
C
Sbjct: 78 CPMC 81
>gi|115391165|ref|XP_001213087.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194011|gb|EAU35711.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 193
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ + V+GG V F+ VD +++ + +++G GIP + + D
Sbjct: 122 ENMKLVYVDGGL-VIQEFLRRGWVDEMVVTHAPVLLG-RGIPLF-GGLEKDVELRLLGVD 178
Query: 345 YFGSDVCLEYI 355
+ +
Sbjct: 179 VIEDGMISTWY 189
>gi|331239010|ref|XP_003332159.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309311149|gb|EFP87740.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 275
Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 13/224 (5%)
Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
+R +TL A S D I A + + + + V ++
Sbjct: 47 CPGCNQRPFVTLTYAQSLDGKIAGADGQHLRARHDGIMVGIGTVLNDDPQLNVRNISLTV 106
Query: 203 DDPELTCRL------NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
+ + + ++ + K L + V+
Sbjct: 107 PLAKQPQPIVLDTALRTPADCKLIKNYKNQTGKQPWLICARSAMSLQRRQELEAAGARVI 166
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS----RLVDSII 312
+ + DL+K+L + G+ L++EGGAA+ S +N +++ +I
Sbjct: 167 PITNGMNAWTYKAKEGLDLEKVLEVCKLNGINRLMIEGGAAIISSILNQVSDNPILNILI 226
Query: 313 LYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355
+ S ++GEG GI S + G D Y
Sbjct: 227 VTVSPYMVGEGIGIKS--SNIDSLSLLRHLETKIMGLDAVFAYT 268
>gi|108761578|ref|YP_630047.1| riboflavin biosynthesis protein RibD domain-containing protein
[Myxococcus xanthus DK 1622]
gi|108465458|gb|ABF90643.1| RibD domain protein [Myxococcus xanthus DK 1622]
Length = 184
Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LV G +A + L+D + I+ G G P+ ++ + F
Sbjct: 115 RGVLV-GAPKLAAALEELGLIDEYRIVVHPIISGSG--PTLFHGLSSARHLELLSTQRFK 171
Query: 348 SDVC-LEYIGK 357
S V L + K
Sbjct: 172 SGVQALHFRRK 182
>gi|291301437|ref|YP_003512715.1| deaminase-reductase domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570657|gb|ADD43622.1| deaminase-reductase domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
Length = 186
Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + + GG + F + +D + + + + G P V +
Sbjct: 115 GERDVWIAGGGELVGQFADQGRLDELRFSVAPVTLTGGAPLLP--RRLTASRLELVSVNR 172
Query: 346 FGSDVCLEYIGKN 358
G L Y N
Sbjct: 173 NGQFAELTYRVMN 185
>gi|229916954|ref|YP_002885600.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
sp. AT1b]
gi|229468383|gb|ACQ70155.1| bifunctional deaminase-reductase domain protein [Exiguobacterium
sp. AT1b]
Length = 173
Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG V + + L+D + + +V+G GIP EG E + G
Sbjct: 107 QDIWLIGGGEVIKAAMEHDLIDRYEIAIAPVVLG-EGIPLF-PEGTKETKLRLTGQRASG 164
Query: 348 SDVCLEY 354
+ Y
Sbjct: 165 QFIMATY 171
>gi|156395053|ref|XP_001636926.1| predicted protein [Nematostella vectensis]
gi|156224034|gb|EDO44863.1| predicted protein [Nematostella vectensis]
Length = 178
Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS-------LLVEGGAA 297
++ + P + C + K + + + S + + GGA
Sbjct: 61 ILTFGDWAWPDKHSYILSSKKIDVPLPCITVTKKSPTELMQKIRSEGKQGKDIWLLGGAG 120
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE-YIG 356
VA SF L+D I+L +G GIP L F + + + Y+
Sbjct: 121 VARSFEKEGLIDEILLSFIPKTLG-EGIPLGLSYDG----FELKNEETLANGMIQRAYLR 175
Query: 357 KN 358
K+
Sbjct: 176 KS 177
>gi|291541627|emb|CBL14737.1| Deoxycytidylate deaminase [Ruminococcus bromii L2-63]
Length = 162
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M ++ A T + +IV + ++ G T
Sbjct: 1 MDRIDKINYYLDIAETVLERG---TCLRRNFGAIIVNNDQIVSTGYTGAPRGRKNCCDLG 57
Query: 54 ---------------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQF 91
HAE A+ A E+ GAT Y+ + S+ +
Sbjct: 58 FCIRQERNIPRGERYELCRSVHAEANAIIHASREQMIGATLYLVGKEMSNGEYVQNTSSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 AMCKRM 123
>gi|224824662|ref|ZP_03697769.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
gi|224603155|gb|EEG09331.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
Length = 209
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
G + + GGA ++ + L+D L+ + +++G G
Sbjct: 134 GGKDVRISGGANTIRQYLAAGLIDEFTLHLAPVLLGGGAR 173
>gi|325282775|ref|YP_004255316.1| bifunctional deaminase-reductase domain-containing protein
[Deinococcus proteolyticus MRP]
gi|324314584|gb|ADY25699.1| bifunctional deaminase-reductase domain protein [Deinococcus
proteolyticus MRP]
Length = 180
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE- 335
L I G +++ ++G +A F+++ +D I L + + + PL +
Sbjct: 101 HLPAIRQAAGSSNVWIQGSGDLAGQFLDAGALDEIALDVAPVAL---TAGMPLLPREVRW 157
Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358
+ G L + +
Sbjct: 158 PRLKLLEARMNGDFARLRWRVER 180
>gi|296533928|ref|ZP_06896452.1| cytosine deaminase [Roseomonas cervicalis ATCC 49957]
gi|296265745|gb|EFH11846.1| cytosine deaminase [Roseomonas cervicalis ATCC 49957]
Length = 147
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSR--WHVGLTSTNPSVACLIVKD-GIVIGRGVTA----YGGCPHAEVQALEEA 63
+ AL+ +R G V ++ G V+GR + HAE+ AL +A
Sbjct: 4 IEIALQEARDAAARGEV----PVGAVVTDAAGRVLGRAGNRVEQDHDASAHAEMLALRQA 59
Query: 64 -----GEEARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 60 AAALGSPRLPGCTLTVTLEPCPMC 83
>gi|269928868|ref|YP_003321189.1| bifunctional deaminase-reductase domain-containing protein
[Sphaerobacter thermophilus DSM 20745]
gi|269788225|gb|ACZ40367.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
thermophilus DSM 20745]
Length = 205
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
++ ++ + V ++ + L G
Sbjct: 77 RMFDFAEGPWGENPPFHVPVFVVTHRTREPLVKEGGTTFTFVTDGIEPALDQARAAAGDK 136
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + GGA+V ++ + L+D I + +++G G L + E R
Sbjct: 137 DVSIGGGASVIQQYLRAGLLDEIHVTLVPVLLGGGKR---LFDHLDETPIELERTQVV 191
>gi|89901614|ref|YP_524085.1| bifunctional deaminase-reductase-like protein [Rhodoferax
ferrireducens T118]
gi|89346351|gb|ABD70554.1| bifunctional deaminase-reductase-like [Rhodoferax ferrireducens
T118]
Length = 215
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + R G ++ K V
Sbjct: 54 GTTGTDEEFAARGFRNIGAWIMGRNMFGPIRGPWPDMNWKGWWGDNPPYHTQVFVLTHHP 113
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
+ L + + GG A ++ + LVD + +
Sbjct: 114 RESITMDGGTTFHFVTDGIFSALARARQAANGLDVRLGGGVATIQQYLRAGLVDEMHIAV 173
Query: 316 SQIVIGEG 323
+ I++G G
Sbjct: 174 APILLGSG 181
>gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
Length = 529
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
V ++ G V+G G HAE++AL +A G T VTLEPC
Sbjct: 402 PVGAAVLDPAGAVVGLGRNRSRERGDMTRHAELEALRQAASALGTPYLSGCTLAVTLEPC 461
Query: 80 SHY 82
Sbjct: 462 PMC 464
>gi|183599213|ref|ZP_02960706.1| hypothetical protein PROSTU_02671 [Providencia stuartii ATCC 25827]
gi|188021442|gb|EDU59482.1| hypothetical protein PROSTU_02671 [Providencia stuartii ATCC 25827]
Length = 180
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ + G +L ++GG +VA + L+D +I+ I++G GIP
Sbjct: 100 DVISSIHCAGFKTLYIDGG-SVAKQCLAEDLIDEMIITIVPILLG-DGIPLF-GNMKKPL 156
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
F+ V+ + + +Y+ KN
Sbjct: 157 QFIHVKSERY-----FDYMVKN 173
>gi|332655102|ref|ZP_08420843.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
bacterium D16]
gi|332515962|gb|EGJ45571.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae
bacterium D16]
Length = 182
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + ++ A T +IVK+ ++ G
Sbjct: 22 MKRIDKENYYLDIAETVLERS---TCMRRCYGAIIVKNDEIVSTGYNGAPRGRKNCMDLG 78
Query: 54 ---------------------HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQF 91
HAE+ A+ A GAT Y+
Sbjct: 79 YCTREAMNVPSGERYELCRSVHAEMNAIISAARRDTLGATLYLAGREAKTGELLHDATSC 138
Query: 92 IIECGI 97
+ +
Sbjct: 139 SMCRRL 144
>gi|307153182|ref|YP_003888566.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
gi|306983410|gb|ADN15291.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822]
Length = 165
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 21/99 (21%)
Query: 1 MPVS---SFDARFMSAALRFS--RWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGG 51
M S D R + + + VA L+ +I
Sbjct: 1 MNFSRPTEQDERMIEKVIALASDAISRNKVG----VAALLACGDEIIVLDHNPFADTQNP 56
Query: 52 CPHAEVQALEEAGEEARGA--------TAYVTLEPCSHY 82
HAE+ L +AG T Y TLEPC
Sbjct: 57 LDHAEIVVLNKAGSYLTKCSQEQKSKLTLYSTLEPCLIC 95
>gi|333030804|ref|ZP_08458865.1| bifunctional deaminase-reductase domain protein [Bacteroides
coprosuis DSM 18011]
gi|332741401|gb|EGJ71883.1| bifunctional deaminase-reductase domain protein [Bacteroides
coprosuis DSM 18011]
Length = 176
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ + ++K+ + G + + GG+ + + +L+D +I+ + I++G GIP
Sbjct: 89 HFINEEWIEKIRELKKEEG-KDIWLVGGSEILSVLLKEKLIDKMIIVQYPILLG-PGIPL 146
Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ + +R + + +
Sbjct: 147 FQGNQEVS-MWSIIRHRIYENGILYT 171
>gi|332295153|ref|YP_004437076.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
narugense DSM 14796]
gi|332178256|gb|AEE13945.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium
narugense DSM 14796]
Length = 154
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEE-----ARGATAYVTLEPCS 80
+ +I K+G ++ P HAE+ A+++A + +G+T Y +LEPC
Sbjct: 23 PIGAIICKEGNILSMSQNFCERSNSPIEHAEILAIKKAIQRYNRWYIQGSTIYCSLEPCL 82
Query: 81 HY 82
Sbjct: 83 MC 84
>gi|329930759|ref|ZP_08284183.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
gi|328934691|gb|EGG31191.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
Length = 183
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L+V GG + + LVD I+ G G P L + N + FG
Sbjct: 114 KNLVVNGGPGLGSTLAQLGLVDEYHFLVQPIIAGRG--PQLLAGVHDRLNLKLIETQPFG 171
Query: 348 SDVCLE 353
S V +
Sbjct: 172 SGVVVH 177
>gi|254784551|ref|YP_003071979.1| riboflavin biosynthesis protein RibD domain-containing protein
[Teredinibacter turnerae T7901]
gi|237683915|gb|ACR11179.1| riboflavin biosynthesis protein RibD domain protein [Teredinibacter
turnerae T7901]
Length = 220
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
AP I+T + + + L++ + V +
Sbjct: 96 WWGDTPPYHAPTFILTNHPREPIQKEGGTTFYFVTEGIHAALEQAQAAAGEKDVRIV--- 152
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
GGA + ++++ LVD + S + +G+G
Sbjct: 153 GGANTINQYLDAGLVDEMHYVISPVFLGDGER 184
>gi|261407040|ref|YP_003243281.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261283503|gb|ACX65474.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 191
Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 11/136 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + + P E + + + + + +L+
Sbjct: 47 TVIWGRGTYQMMHSYWPSVPSNPSASQHELNHAEWIEKTAKIIFSTTLEKVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + +L ++ G AH + L+D + S ++IG G+P +
Sbjct: 107 EDVEEEIKNLKQQPGKDMVILGSPRFAHYLMQLDLIDEYKITVSPVLIGS-GLPLF-QGL 164
Query: 333 YLEKNFMCVRRDYFGS 348
+ N + F S
Sbjct: 165 KEKVNLKLIENKTFDS 180
>gi|260463958|ref|ZP_05812154.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259030333|gb|EEW31613.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 176
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G +A S + L+D LY +V+G G P V D D + L
Sbjct: 117 GPNLARSVTDLGLIDEYQLYFHPVVLGH-GKPFFAGPR---PPLRFVASDLIDDDVIRLT 172
Query: 354 YIG 356
Y+
Sbjct: 173 YVP 175
>gi|159123539|gb|EDP48658.1| dihydrofolate reductase family protein [Aspergillus fumigatus
A1163]
Length = 194
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 5/161 (3%)
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
L P + R E R+ + + D I
Sbjct: 24 NHDITWLTSPPKNTHHLPPTSPRRVDTIEQHMSRVDCMIMGRRTYDFCISLPEWPYAKKP 83
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ A++ K+I + D K + G + V+GG V F+
Sbjct: 84 TFVLSRSMAPGAYKAKDIEVEVVGSLDEAKDVFERERLGC--VYVDGG-EVVTEFLRRGW 140
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
VD +++ + +++G G + F V D
Sbjct: 141 VDEMVVTTAPVLLGNGIR--LFGGLEEDVRFTLVGVDVIEE 179
>gi|322698022|gb|EFY89796.1| DRAP deaminase [Metarhizium acridum CQMa 102]
Length = 235
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 30/160 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVT-------AYGGCPHA 55
+ FM AL+ +R V ++V ++ G + G HA
Sbjct: 68 NDHHSFMEYALKQARLS-PAAHAEFCVGAVLVDSQVNRILSAGYSMELPSPVGDQGNTHA 126
Query: 56 EVQALEE-----------AGEEARG-----ATAYVTLEPCSHY--GRSPPCAQFIIECGI 97
E + A + R Y T+EPCSH G + + + G+
Sbjct: 127 EQCCFIKVALAHNLPPAHAEDHIRHVLPARTVLYTTMEPCSHRLSGNTTCVERILKLKGV 186
Query: 98 RRVVVCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESEGK 135
R V G++ L + GI V + +
Sbjct: 187 IRSVYVGIRQPSTFVRCNDGMKRLQEAGIEVRITEDMKEY 226
>gi|254524810|ref|ZP_05136865.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stenotrophomonas sp. SKA14]
gi|219722401|gb|EED40926.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stenotrophomonas sp. SKA14]
Length = 190
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
GV + ++GG +F+ + +VD I + + +V+G G S E E +
Sbjct: 118 DLGVQDVYIDGG-RTIQAFLRADMVDEITISVAPVVLGAG--RSLFGELETELQLVVRGS 174
Query: 344 DYFGSD-VCLEYIG 356
V Y
Sbjct: 175 HATDDGLVRTTYEV 188
>gi|329943948|ref|ZP_08292217.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328531381|gb|EGF58223.1| riboflavin biosynthesis protein RibD protein [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 176
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V +N + +++ + I +L++L+ L G +
Sbjct: 53 WNTYNQIITELSPDNWVYDNLLTYVFTHREQQDSDKIIFTSDNLEELIKKLKGVEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I+S ++D ++ ++G GI + E + V
Sbjct: 113 ICGGADLVQQAISSDVIDEYLISIIPTILG-NGIKLF-SQNDAEHKLKLINTITNNGIVE 170
Query: 352 LEYIGK 357
L YI +
Sbjct: 171 LNYIRR 176
>gi|227496672|ref|ZP_03926948.1| cytosine deaminase [Actinomyces urogenitalis DSM 15434]
gi|226833820|gb|EEH66203.1| cytosine deaminase [Actinomyces urogenitalis DSM 15434]
Length = 154
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G VI T + HAEV+AL AG G T VTLEPC
Sbjct: 29 PVGAVVLDPGGRVIAEAANARETEHDPTAHAEVRALRAAGARLADSHLDGCTLVVTLEPC 88
Query: 80 SHY 82
+
Sbjct: 89 TMC 91
>gi|307328235|ref|ZP_07607413.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886069|gb|EFN17077.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 203
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L + G A + S + + L+D + L + +V+G G P + G
Sbjct: 123 RELQIHGSARLGQSLLAAGLIDELRLAIAPVVVGSGRHLFPDGGTPAGLRLLHNETTPSG 182
>gi|229087128|ref|ZP_04219278.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
Rock3-44]
gi|228696196|gb|EEL49031.1| Bifunctional deaminase-reductase domain protein [Bacillus cereus
Rock3-44]
Length = 192
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+L + GG +A S + +L+D ++L + ++IG G P V ++
Sbjct: 123 NLWLCGGGELAGSLVQQQLIDQVVLKINPVIIG-EGTPLF-GSVKSRLKLKLVDAKHY 178
>gi|144899704|emb|CAM76568.1| Dihydrofolate reductase [Magnetospirillum gryphiswaldense MSR-1]
Length = 172
Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ ++GGA +F+++ L+D + L+ I++G GIP L + +
Sbjct: 105 DIFIDGGAQTVRAFLDADLIDHLDLFTIPILLG-QGIPRFLPSRR-RTSLRLADSETMAQ 162
Query: 349 D-VCLEYIGK 357
V Y+
Sbjct: 163 GVVRSTYLRP 172
>gi|260656420|pdb|3JTW|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
gi|260656421|pdb|3JTW|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_805003.1) From Pediococcus Pentosaceus Atcc 25745 At
1.90 A Resolution
Length = 178
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294
T L+P V + + + ++ + I + +L+ + + + G
Sbjct: 58 YEQVTQKLSPEKYVYADRQTYIVTSHLGEDTDKIKYWKQSPVELVKRIQKEKGKDVWIVG 117
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + + + L+D+ IL I +G G + + + V Y
Sbjct: 118 GAKIIDPLVQANLIDTYILTTVPIFLGSGIR--LFDRLEEQVPVRLIDVYQKNELVYSIY 175
Query: 355 IG 356
Sbjct: 176 QR 177
>gi|116252725|ref|YP_768563.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115257373|emb|CAK08468.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 213
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 2/118 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
++ P + + + L
Sbjct: 84 RGDWPDNAWKGWWGPNLPYHAPTYILTHYPREPIVMEGGTTFHFVTGGVEEALDKAKAAA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG + ++ + L+D + S +V+G+G F
Sbjct: 144 GGKDVKIGGGVSTVRQYLQAGLIDELHFAISPVVLGKGEA-MFAGIDLPALGFRVAEH 200
>gi|229819084|ref|YP_002880610.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564997|gb|ACQ78848.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 188
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V GG +A + + + L+D L +V+G G + ++ ++ V F S
Sbjct: 115 DVIVWGGGRLAGALVAADLIDEYRLLVQPLVLGRGQ--ALFDQLPESRHLDLVEATPFPS 172
Query: 349 DVCLEYIGK 357
V L
Sbjct: 173 GVVLHVYRP 181
>gi|121594381|ref|YP_986277.1| deaminase-reductase domain-containing protein [Acidovorax sp. JS42]
gi|120606461|gb|ABM42201.1| bifunctional deaminase-reductase domain protein [Acidovorax sp.
JS42]
Length = 193
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G +L V GG +A F ++ L+D +IL I +G G P +
Sbjct: 112 GTKNLWVVGGGDLAGQFYDAGLLDELILQVGSITLGRGKPLFPRRLPGTA--LRLLDAQP 169
Query: 346 FG 347
G
Sbjct: 170 LG 171
>gi|134107133|ref|XP_777879.1| hypothetical protein CNBA5760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260577|gb|EAL23232.1| hypothetical protein CNBA5760 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQALEE 62
FMS A + + + +V +I RG H E+ LE
Sbjct: 16 HFMSVAHEQALKSLSEGGI--PIGAALVHLPTSRIISRGHNNRVQLSSNVRHGEMDCLEN 73
Query: 63 AGEEARG----ATAYVTLEPCSHYGRSP 86
G G + TL PC +
Sbjct: 74 LGRVPEGLLSECAMFTTLSPCIMCSATC 101
>gi|66823805|ref|XP_645257.1| hypothetical protein DDB_G0272442 [Dictyostelium discoideum AX4]
gi|60473427|gb|EAL71373.1| hypothetical protein DDB_G0272442 [Dictyostelium discoideum AX4]
Length = 241
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--HAEVQALEE 62
F ++M AL + H N IV K+G ++ G H E++A+
Sbjct: 64 FHEKYMRIALDKAIEH------NSKFGAAIVHKNGTLMCTAANTGEGSRILHGEIRAILN 117
Query: 63 AGEEARGAT-----AYVTLEPCSHYG 83
+ + T Y T EPC
Sbjct: 118 CTQLYQQETWEDYYMYTTGEPCPMCS 143
>gi|269794773|ref|YP_003314228.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
gi|269096958|gb|ACZ21394.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
Length = 184
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V+GG SF+++ LVD I + + +++G G + +
Sbjct: 112 GAERVYVDGG-RTIQSFVSAGLVDEITVSVAPVLLGRGSRLFGDLDRDVLLTLRGHHSTD 170
Query: 346 FGSDVCLEY 354
+ + Y
Sbjct: 171 GDGLLRVTY 179
>gi|189502591|ref|YP_001958308.1| hypothetical protein Aasi_1257 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498032|gb|ACE06579.1| hypothetical protein Aasi_1257 [Candidatus Amoebophilus asiaticus
5a2]
Length = 183
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + VL+ K N I +L KL+ L + + +EGG V
Sbjct: 68 FLHKDKQCYVLSTKQHKSIHNHITFYQGELTKLVEELKSKFSKGIYIEGGGEVISELRKD 127
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
LVD I+ I++G GIP + +E+ + +
Sbjct: 128 HLVDEYIISIIPILLGS-GIPLF-KTCNIEEKLELISAKAY 166
>gi|58259071|ref|XP_566948.1| cytosine deaminase [Cryptococcus neoformans var. neoformans JEC21]
gi|57223085|gb|AAW41129.1| cytosine deaminase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 165
Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQALEE 62
FMS A + + + +V +I RG H E+ LE
Sbjct: 16 HFMSVAHEQALKSLSEGGI--PIGAALVHLPTSRIISRGHNNRVQLSSNVRHGEMDCLEN 73
Query: 63 AGEEARG----ATAYVTLEPCSHYGRSP 86
G G + TL PC +
Sbjct: 74 LGRVPEGLLSECAMFTTLSPCIMCSATC 101
>gi|284042868|ref|YP_003393208.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283947089|gb|ADB49833.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 240
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKNFMCVRRD 344
G + V GG + +++ L+D + L+ + +++G+G P + V
Sbjct: 143 GSKDVAVAGGGELLRQVLSAGLLDQLELHIAPVLLGDGQRLFDPSLGLGADDGIELVPTR 202
Query: 345 YF 346
Sbjct: 203 VV 204
>gi|70983910|ref|XP_747481.1| dihydrofolate reductase family protein [Aspergillus fumigatus
Af293]
gi|66845107|gb|EAL85443.1| dihydrofolate reductase family protein [Aspergillus fumigatus
Af293]
Length = 194
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 5/161 (3%)
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
L P + R E R+ + + D I
Sbjct: 24 NHDITWLTSPPKNTHHLPPTSPRRVDTIEQHMSRVDCMIMGRRTYDFCISLPEWPYAKKR 83
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ A++ K+I + D K + G + V+GG V F+
Sbjct: 84 TFVLSRSMAPGAYKAKDIEVEVVGSLDEAKDVFERERLGC--VYVDGG-EVVTEFLRRGW 140
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
VD +++ + +++G G + F V D
Sbjct: 141 VDEMVVTTAPVLLGNGIR--LFGGLEEDVRFTLVGVDVIEE 179
>gi|289583345|ref|YP_003481755.1| CMP/dCMP deaminase zinc-binding protein [Natrialba magadii ATCC
43099]
gi|289532843|gb|ADD07193.1| CMP/dCMP deaminase zinc-binding protein [Natrialba magadii ATCC
43099]
Length = 156
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHA 55
M ++FD M A +R V + ++V+D V+ VT H
Sbjct: 1 MDPAAFDHEEHMHRAFDLAREAV--ARGDRPFGSVLVRDNTVVDSASNRVVTEDDIRRHP 58
Query: 56 EVQALEEAGEEARGAT--------AYVTLEPCSHY 82
E L A RG Y + EPC
Sbjct: 59 E---LHLAYRAVRGFDPAGRAELVMYTSTEPCPMC 90
>gi|222153030|ref|YP_002562207.1| hypothetical protein SUB0878 [Streptococcus uberis 0140J]
gi|222113843|emb|CAR41946.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 176
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + I L+D ++ ++G G P + +E +
Sbjct: 111 IWLFGGADLLQLMIEEDLIDRYVIGIIPTILG-QGRPLF-KGQSIEHKLRLIESTVTDGI 168
Query: 350 VCLEYIGK 357
L Y +
Sbjct: 169 AMLVYEKR 176
>gi|320160102|ref|YP_004173326.1| dihydrofolate reductase [Anaerolinea thermophila UNI-1]
gi|319993955|dbj|BAJ62726.1| dihydrofolate reductase [Anaerolinea thermophila UNI-1]
Length = 187
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ ++L L +G + V+GG F+ + L+ IIL +++G GIP
Sbjct: 98 QWMQGEPAQILARLAEQGARHVYVDGG-ETIRRFLRAGLIQDIILTHVPVLLG-RGIPLF 155
Query: 329 LEEGYLEKNFMCVRR 343
+ E V
Sbjct: 156 -GDLDGEIPLEHVET 169
>gi|118618319|ref|YP_906651.1| hypothetical protein MUL_2905 [Mycobacterium ulcerans Agy99]
gi|118570429|gb|ABL05180.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 186
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L TI G + V GG +A F+++ +D I + + + G P
Sbjct: 105 VLPTIEEAAGAGDIWVVGGGDLAGQFLDAGALDEIRSSVAPVALAGGAPLLP--RCIGAD 162
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
V G L Y
Sbjct: 163 RLRLVSAAAHGQFARLVYTV 182
>gi|315504399|ref|YP_004083286.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|315411018|gb|ADU09135.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 191
Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L R + + GG +A ++ +D +++ + +V+G G ++ G+ +
Sbjct: 113 ALVRELKTRPGRDIWLCGGGQLAGQLLDE--IDELVVKLNPVVVGSGIK--LVDSGFDPR 168
Query: 337 NFMCVRRDYFG-SDVCLEYIGK 357
F V L Y
Sbjct: 169 RLTLTSARPFDAGVVVLHYTRN 190
>gi|260170488|ref|ZP_05756900.1| hypothetical protein BacD2_01338 [Bacteroides sp. D2]
gi|315918834|ref|ZP_07915074.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313692709|gb|EFS29544.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 169
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ V GG + +N+ L+D + LY +++G+G
Sbjct: 104 DISVIGGGNLITFLLNNGLLDELNLYIVPVLLGDG 138
>gi|325978066|ref|YP_004287782.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177994|emb|CBZ48038.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 226
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 6/127 (4%)
Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296
+ L D + I + + + V+ L V GG
Sbjct: 101 YEKPHLIITSEAVSTDYLDYLDSKHISWIACGKEKINLARAMEILAEEFAVSRLAVVGGG 160
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351
+ F+ + L+D I L + G G+ S + +E V+ G+ V
Sbjct: 161 HINAGFLQAGLLDEISLLIGLGIDGREGMASVFDGFSMETEPTAVTLKEVKTYPDGA-VW 219
Query: 352 LEYIGKN 358
L Y +N
Sbjct: 220 LRYTSEN 226
>gi|229822239|ref|YP_002883765.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229568152|gb|ACQ82003.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 201
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + L G + +
Sbjct: 79 MWRGWWGEDPPYHHPTFVLTHHPHEPVEMDGGTTFYFVTDGPAAALELAFDAAGGADVAL 138
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
GGA+ F+++RL+D + + + +++G G + +G L + V +
Sbjct: 139 GGGASTIRQFLDARLLDELNVAIAPVLLGAGER---IFDGPLPAGYGVVSSEP 188
>gi|302532151|ref|ZP_07284493.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
gi|302441046|gb|EFL12862.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
Length = 213
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 10/190 (5%)
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
+ + G+ + G + + + Q + +
Sbjct: 14 VRTSEPGTRKAGTMRKLIYGMNVTLDGYIAAPGDDIGWSVPSDELFQFWSDQLLATDLSL 73
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
S TA P E + K + + +L+T
Sbjct: 74 YGRKL-WETMSSYWPTADQQPSATPAEIEFARRWQDMPKVVFSSTVDEVDWNTRLVTGDA 132
Query: 284 GRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L E GA +A + + + L+D +L + +++G G P
Sbjct: 133 VTEIARLKGEDGGPMDIAGATLAGTAMRAGLIDEYVLATAPVLVGG-GTPFFTALDNW-V 190
Query: 337 NFMCVRRDYF 346
N V+
Sbjct: 191 NLTLVQTRTL 200
>gi|293406146|ref|ZP_06650072.1| bifunctional deaminase-reductase [Escherichia coli FVEC1412]
gi|298381881|ref|ZP_06991478.1| deaminase-reductase [Escherichia coli FVEC1302]
gi|300900166|ref|ZP_07118355.1| riboflavin biosynthesis protein RibD protein [Escherichia coli MS
198-1]
gi|291426152|gb|EFE99184.1| bifunctional deaminase-reductase [Escherichia coli FVEC1412]
gi|298277021|gb|EFI18537.1| deaminase-reductase [Escherichia coli FVEC1302]
gi|300356281|gb|EFJ72151.1| riboflavin biosynthesis protein RibD protein [Escherichia coli MS
198-1]
Length = 178
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
CR ++ L L+ + V + ++GG + SF+ LV I++ +++G G
Sbjct: 91 QFSCRTPREALADLMEKNVHRVYIDGG-QLIQSFLREGLVADIVITTVPVLLGSG--KPL 147
Query: 329 LEEGYLEKNFMCVRRDYF 346
+ + + F
Sbjct: 148 FGVLPHDIDLTLLSSRSF 165
>gi|292494136|ref|YP_003533279.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
[Haloferax volcanii DS2]
gi|291369169|gb|ADE01399.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
[Haloferax volcanii DS2]
Length = 153
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ--- 58
R M + +R ++V+D VI R VT H E+Q
Sbjct: 9 DHERHMRESFELARKAAARGDE--PFGSVLVRDDEVIMRDSNRIVTESDIRRHPELQLAY 66
Query: 59 -ALEEAGEEARGA-TAYVTLEPCSHY 82
A E + R A Y + EPC
Sbjct: 67 RACREYDADERAAMVMYTSTEPCPMC 92
>gi|218706143|ref|YP_002413662.1| putative Bifunctional deaminase-reductase [Escherichia coli UMN026]
gi|218433240|emb|CAR14139.1| putative Bifunctional deaminase-reductase, C-terminal from
bacteriophage origin [Escherichia coli UMN026]
Length = 179
Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
CR ++ L L+ + V + ++GG + SF+ LV I++ +++G G
Sbjct: 92 QFSCRTPREALADLMEKNVHRVYIDGG-QLIQSFLREGLVADIVITTVPVLLGSG--KPL 148
Query: 329 LEEGYLEKNFMCVRRDYF 346
+ + + F
Sbjct: 149 FGVLPHDIDLTLLSSRSF 166
>gi|325103385|ref|YP_004273039.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
gi|324972233|gb|ADY51217.1| bifunctional deaminase-reductase domain protein [Pedobacter saltans
DSM 12145]
Length = 185
Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++L + G G LL GG + I L+D +++G+G +
Sbjct: 107 EILKLKQGEGKNILL--GGVDLTSQIIELDLIDEYHFVVQPLIVGKGRRLWDRADLPERL 164
Query: 337 NFMCVRRDYFGSD-VCLEYIG 356
+ F S + L Y
Sbjct: 165 QLKLIESRVFKSGAIMLRYTK 185
>gi|300789562|ref|YP_003769853.1| cytidine/deoxycytidine deaminase [Amycolatopsis mediterranei U32]
gi|299799076|gb|ADJ49451.1| cytidine/deoxycytidine deaminase [Amycolatopsis mediterranei U32]
Length = 141
Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 17/93 (18%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEV 57
+ + + A+ +R NP L+ DG ++ T H E
Sbjct: 1 MKDTEETLLRRAIELAREAREEHG-NPPFGSLLADADGKILAEDRNTSLTDNDITAHPE- 58
Query: 58 QALEEAGEEARG--------ATAYVTLEPCSHY 82
L+ A A+ T + + +PC
Sbjct: 59 --LKLARWAAQNLDPETAAATTMFTSTQPCGMC 89
>gi|255035568|ref|YP_003086189.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254948324|gb|ACT93024.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 189
Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
A K + + + G ++ G ++A + IN+ LVD I + +
Sbjct: 92 APWGKWEACQVIKTDPVDTVRRLKQQEGKNIVMW-GSLSIAQALINAGLVDDIQVRVVPV 150
Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIGK 357
+I + G P E+ + + + + L Y K
Sbjct: 151 LI-KAGRPLFEPSQNDEQELELIESKSYPTGITLLRYAPK 189
>gi|319950227|ref|ZP_08024154.1| bifunctional deaminase-reductase domain protein [Dietzia cinnamea
P4]
gi|319436131|gb|EFV91324.1| bifunctional deaminase-reductase domain protein [Dietzia cinnamea
P4]
Length = 178
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V GG +A F + ++D +++ + + +G G L G + R+
Sbjct: 106 GGRDVWVMGGGGLAAEFAGAGMLDEVVVSIAPVTLGSGKS---LFGGAFDLELKGCERNR 162
>gi|298248631|ref|ZP_06972436.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297551290|gb|EFH85156.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 199
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ S D K V + + + L G
Sbjct: 72 RGSTDWKGWWGENPPYHAPVFVLSQNRRDPIAMEGSTTFFFIADGIEAALSRAKEVAGER 131
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GGA + ++++ L+D + L+ + IG G L EG + + V
Sbjct: 132 PIAIAGGANTINQYLSAGLIDELWLHIVPVTIGSGAR---LFEGVPDLDLEPVEI 183
>gi|53712667|ref|YP_098659.1| hypothetical protein BF1374 [Bacteroides fragilis YCH46]
gi|189459558|ref|ZP_03008343.1| hypothetical protein BACCOP_00182 [Bacteroides coprocola DSM 17136]
gi|255692159|ref|ZP_05415834.1| riboflavin biosynthesis protein RibD domain protein [Bacteroides
finegoldii DSM 17565]
gi|52215532|dbj|BAD48125.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|189433810|gb|EDV02795.1| hypothetical protein BACCOP_00182 [Bacteroides coprocola DSM 17136]
gi|260622184|gb|EEX45055.1| riboflavin biosynthesis protein RibD domain protein [Bacteroides
finegoldii DSM 17565]
Length = 172
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 3/118 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +LV
Sbjct: 48 ANTYNYIFEHWGGWPHKSKRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDMLVV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
GG + S I + L+DS+ +Y ++ G+G + E + + V
Sbjct: 108 GGGKLLTSLIKAGLLDSLTIYTVPVMAGKG--IGFVGETSGSL-WKLSESRVLDNGVV 162
>gi|312195390|ref|YP_004015451.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
gi|311226726|gb|ADP79581.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c]
Length = 154
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG---VTAYGGCPHAE 56
M +S DA M +L NP ++V DG + VT HAE
Sbjct: 1 MTISVQDA--MKRSLEL-AAEAAAAGDNPY-GAVLVTADGQAVEERNRVVTTSDPTAHAE 56
Query: 57 VQALEEA----GEEARGATAYVTLEPCSHY 82
A+ A G + GAT + EPC
Sbjct: 57 SMAIRVAAKTWGIDLSGATMVASFEPCPMC 86
>gi|297559963|ref|YP_003678937.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844411|gb|ADH66431.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 179
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG VA L+D +++ + + +G G SPL G ++ + G
Sbjct: 113 RDVWLIGGGGVAADLARLGLLDEVVVSVAPVTLGAG---SPLLAGRVD--LRVLDVHRAG 167
Query: 348 SDVCLEYIG 356
C+ Y
Sbjct: 168 DFACMRYEV 176
>gi|228986257|ref|ZP_04146396.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228773456|gb|EEM21883.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 181
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LL+ G + + + L+D + +++G G + R G
Sbjct: 110 QNLLIYGSGELIQTLMQHDLIDEYHFMINPVIVGSGKRLFKTGNDTKALKLIETRTTSSG 169
Query: 348 SDVCLEYIGKN 358
V L Y +
Sbjct: 170 V-VILSYQPEK 179
>gi|85375364|ref|YP_459426.1| nitrogen fixation protein [Erythrobacter litoralis HTCC2594]
gi|84788447|gb|ABC64629.1| nitrogen fixation protein [Erythrobacter litoralis HTCC2594]
Length = 142
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 17/84 (20%)
Query: 11 MSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG---- 64
M AL +R G + ++VK VI H E A
Sbjct: 1 MRLALEEARKAADAGEV----PIGAVVVKGEKVI-VAAHNSPRTDHDPTAHAEIAAIRAA 55
Query: 65 ------EEARGATAYVTLEPCSHY 82
E G +VTLEPC+
Sbjct: 56 AKALGQERLEGCDLWVTLEPCAMC 79
>gi|260771105|ref|ZP_05880032.1| cytosine deaminase [Vibrio furnissii CIP 102972]
gi|260613702|gb|EEX38894.1| cytosine deaminase [Vibrio furnissii CIP 102972]
Length = 158
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-------C 52
M + D R++ + + +P A ++V +G ++ G
Sbjct: 1 MLNPTLDYRWLRHSFALAEDAK-SRGIHP-FAAVLVDANGEILLE---QINGYLPDLDMT 55
Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE + +A + T YV+ EPC+
Sbjct: 56 GHAERLIMTQASKLYRPDFLNQCTLYVSAEPCAMC 90
>gi|326384411|ref|ZP_08206091.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia neofelifaecis NRRL B-59395]
gi|326196756|gb|EGD53950.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia neofelifaecis NRRL B-59395]
Length = 250
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 3/131 (2%)
Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278
P+ +++ L +D + D+ AL I D L
Sbjct: 103 PLLVLVSRSLNLPVDYPTATHPDVLIATCSEAPDEARSALLDAGAGIVDCGRSTVDPHAL 162
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ L RG +L EGG + L+D + L S IV G P +
Sbjct: 163 VAELAARGHRRVLCEGGPRFLAELAAAGLLDELALTISPIVTGGDA-PRIARGAVADAPM 221
Query: 339 MCVRRDYFGSD 349
G D
Sbjct: 222 RVRHL--LGDD 230
>gi|139438131|ref|ZP_01771684.1| Hypothetical protein COLAER_00672 [Collinsella aerofaciens ATCC
25986]
gi|133776328|gb|EBA40148.1| Hypothetical protein COLAER_00672 [Collinsella aerofaciens ATCC
25986]
Length = 231
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---- 329
L + + +L++ GG + SF+ + + D I + + G P
Sbjct: 141 HGLALSKLKEEFNIETLMLGGGGVLNWSFLQAGMCDEISIVLAAAADGSPDTPPVFRAAE 200
Query: 330 -EEGYLEKNFMCVRRDYF-GSDVCLEY 354
F G V L Y
Sbjct: 201 GISESKALGFTLKEAKAMDGGAVWLRY 227
>gi|325068957|ref|ZP_08127630.1| bifunctional deaminase-reductase domain protein [Actinomyces oris
K20]
Length = 176
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V N + +++ + I L++L+ L G +
Sbjct: 53 WNTYNQIITELSPDNWVYGNLLTYVFTHREQQDSDKIIFTSDSLEELIKKLKGVEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I+S ++D ++ ++G GI + E + V
Sbjct: 113 ICGGADLVQQAISSDVIDEYLISIIPTILG-NGIKLF-SQNDAEHKLKLINTITNNGIVE 170
Query: 352 LEYIGK 357
L YI +
Sbjct: 171 LNYIRR 176
>gi|220918488|ref|YP_002493792.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956342|gb|ACL66726.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 182
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 7/134 (5%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P ++ + + F N +++ D K L
Sbjct: 55 WPQVARDPKARPADRTWARKLEAKPKYVVSTTRRDFPWSNTHLVEGDLTRAVKALKKATP 114
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ LV G ++ + LVD L +V G G P V
Sbjct: 115 RGI---LV-GSPQLSAALQRLDLVDEYRLVVHPVVAGHG--PYLFTGLQPSLRLKLVAAR 168
Query: 345 YFGSDVC-LEYIGK 357
S + L Y +
Sbjct: 169 RLKSGIVTLHYRRR 182
>gi|91088933|ref|XP_973477.1| PREDICTED: similar to dCMP deaminase [Tribolium castaneum]
gi|270011568|gb|EFA08016.1| hypothetical protein TcasGA2_TC005605 [Tribolium castaneum]
Length = 318
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 28/106 (26%)
Query: 2 PVSSFD------ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP- 53
SS D M+ + SR V +V G IG G
Sbjct: 152 KFSSSDKIVLKNEIIMAFCEKVSRNSK---DPKKKVGACVVNAQGQAIGWGFNDMPQSHE 208
Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHY 82
HAE+ A+ + + A Y T PC+
Sbjct: 209 DFNKYWENREEKLLRVCHAELNAIVNSKGSLKNAKLYCTWFPCNIC 254
Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP 53
D M L +R V +V ++IG + G P
Sbjct: 13 DEAIMEHCLSLARKSK---DPKIQVGACVVNTQDMIIGSAFNSPPNGWP 58
>gi|54026756|ref|YP_120998.1| hypothetical protein nfa47820 [Nocardia farcinica IFM 10152]
gi|54018264|dbj|BAD59634.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 187
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLE 353
G A I + LV+ + ++G G P + + V F + + L
Sbjct: 127 GPTTAAEAIRAGLVEEFRFFVVPKLVGGGVRALP---DGVHLDVTLVEHRIFDNGMAYLR 183
Query: 354 YI 355
Y
Sbjct: 184 YR 185
>gi|295100049|emb|CBK89138.1| Dihydrofolate reductase [Eubacterium cylindroides T2-87]
Length = 190
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 2/129 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P EN + + + I DL + + L ++
Sbjct: 53 WNTYHQIVTELSPDFWPYENQITYVMTHREEASSEKIRFINEDLNEFVIKLKKEKGKNIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA V ++ L+D + ++G G ++G E V+ + +
Sbjct: 113 ICGGANVVQQLMDEDLIDVYNVTIIPTILGSGVR--LFKKGKNEIKLSLVKAKTYNGMID 170
Query: 352 LEYIGKNLC 360
Y + +
Sbjct: 171 AVYTRRGML 179
>gi|242779025|ref|XP_002479358.1| DRAP deaminase, putative [Talaromyces stipitatus ATCC 10500]
gi|218722977|gb|EED22395.1| DRAP deaminase, putative [Talaromyces stipitatus ATCC 10500]
Length = 253
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 1 MPVSSF-DARFMSAALRFSRWHVGLTSTNPSVACLIV----------KDGIVIGRGVT-A 48
M S +++ L+ + TN V +++ D ++ G T
Sbjct: 1 MTSSESSHLKYLRECLKLASKSPPR-PTNFRVGAILILRPDTPDDTSSDDKILSTGYTME 59
Query: 49 YGGCPHAEVQALEE 62
G HAE L
Sbjct: 60 LPGNTHAEQCCLSN 73
>gi|260905021|ref|ZP_05913343.1| hypothetical protein BlinB_06793 [Brevibacterium linens BL2]
Length = 187
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 11/154 (7%)
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ + + + S TA P + E++ L K +
Sbjct: 33 FQWWSDRVGATALALYGRRL-WEAMSSHWPTAAQQPGVTPAEHEYARRWLDMPKVVFSST 91
Query: 269 YCDCRDLKKLLTILVGRGVTSL-------LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
+L + +T L + GA +A S + + L+D IL ++IG
Sbjct: 92 ISAVDWNARLFSGDAVAEITRLKSDDGGPMDIVGATLASSAMRAGLIDEYILVTYPVLIG 151
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
G + V F G + Y
Sbjct: 152 GGT--PFFAALDNWVHLNLVETQSFPGGVNLMRY 183
>gi|146295406|ref|YP_001179177.1| CMP/dCMP deaminase, zinc-binding [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145408982|gb|ABP65986.1| tRNA-adenosine deaminase [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 143
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
+A +++DG +I + HAE+ A+ +A ++ RG VT EPC
Sbjct: 21 PIAAAVLRDGEIISIQKNDSKNAIFHAEILAILDAASKLSTKDLRGCEMVVTKEPCPMC 79
>gi|299756210|ref|XP_001829171.2| dCMP deaminase [Coprinopsis cinerea okayama7#130]
gi|298411573|gb|EAU92806.2| dCMP deaminase [Coprinopsis cinerea okayama7#130]
Length = 265
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG 45
S+D FM+ A SR + V ++V++ VI G
Sbjct: 228 SWDDYFMTLASLASRRSNCMKR---RVGAVLVRENRVIATG 265
>gi|108805120|ref|YP_645057.1| bifunctional deaminase-reductase-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108766363|gb|ABG05245.1| bifunctional deaminase-reductase-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 179
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + V G + + + LVD L +V+G G L +G + G
Sbjct: 110 TDITVHGSPTLVRTLMRHDLVDRYRLLVYPLVLGGGKR---LFDGGVPARLRLSESRVLG 166
Query: 348 SDVC-LEYIG 356
+V L Y
Sbjct: 167 PEVVALVYEP 176
>gi|291532792|emb|CBL05905.1| Cytosine/adenosine deaminases [Megamonas hypermegale ART12/1]
Length = 158
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRG----VTAYGGCPHAEVQAL 60
++ A+ S+ N ++V +G ++ +T HAE +
Sbjct: 2 DHLFYLRKAIEVSKKSRE--HGNTPFGAILVDGEGNILLEQENIEITESNCSGHAETSLM 59
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
+A ++ T Y T EPC+
Sbjct: 60 IKASKKYSKDFLWNCTLYSTAEPCAMC 86
>gi|118464690|ref|YP_879612.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium avium 104]
gi|254773334|ref|ZP_05214850.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium avium subsp. avium ATCC 25291]
gi|118165977|gb|ABK66874.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium avium 104]
Length = 152
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
D + +AL + + + ++V DG + R V A HAE+ AL
Sbjct: 4 DEDLIRSALAVAATAGPR---DVPIGAVVVGADGTELARAVNAREALGDPTAHAEILALR 60
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A G GAT VT+EPC+
Sbjct: 61 AAAAALGDGWRLEGATLAVTVEPCTMC 87
>gi|307324928|ref|ZP_07604133.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889426|gb|EFN20407.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 204
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ GG A S + + LVD + L+ + +V+G G +PL G + +
Sbjct: 141 FLMGGGATIRSALAAGLVDELTLHLAPVVLGTG---TPLFTGGAPRTLVQRSVT 191
>gi|284030465|ref|YP_003380396.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283809758|gb|ADB31597.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 188
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G +A I + LVD L ++G G P + + + + +F + V L
Sbjct: 125 GPVLAAQAIRAGLVDEYQLLLGPAIVGGGHRFFP---DDIRVDLELLDQRHFANGVVYLR 181
Query: 354 YIGKN 358
Y KN
Sbjct: 182 YGVKN 186
>gi|84494756|ref|ZP_00993875.1| hypothetical protein JNB_08159 [Janibacter sp. HTCC2649]
gi|84384249|gb|EAQ00129.1| hypothetical protein JNB_08159 [Janibacter sp. HTCC2649]
Length = 220
Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLK 276
R + D+ P V + +
Sbjct: 72 MGRRKFWPYPGPWTDDTWRGWWGENPPFHTPVFVMTHHPHESIEMDGGTTFHFVAGTPAE 131
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L T G + + GG + F+++ L+D + L + IV+G G
Sbjct: 132 VLATARESAGDLDIRIGGGPTIVREFLSAGLIDHLHLVVTPIVLGRG 178
>gi|321249831|ref|XP_003191590.1| cytosine deaminase [Cryptococcus gattii WM276]
gi|317458057|gb|ADV19803.1| Cytosine deaminase, putative [Cryptococcus gattii WM276]
Length = 165
Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 12/88 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQALEE 62
FMS A + + +V +I RG H E+ LE
Sbjct: 16 HFMSVAHDQALKSRSEGGI--PIGAALVHLPTSRIISRGHNNRVQLSSNVRHGEMDCLEN 73
Query: 63 AGE----EARGATAYVTLEPCSHYGRSP 86
G R + TL PC +
Sbjct: 74 LGRVPEGLLRECAMFTTLSPCIMCSATC 101
>gi|145596073|ref|YP_001160370.1| deaminase-reductase domain-containing protein [Salinispora tropica
CNB-440]
gi|145305410|gb|ABP55992.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 180
Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ TA P L + A + L+ L R
Sbjct: 51 YDEWAPYWPTAEEQPFADFINEVPKFLLSSATPTVPWANTTVVSSPVADLVRRLKERPGG 110
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ V G +A S + LVD + L + V+G G E + + +R +
Sbjct: 111 DIGVHGSIRLAQSLLADNLVDELRLVIAPAVLGS-GRRLLGEGDEQLRQWNLLRLE 165
>gi|320012649|gb|ADW07499.1| CMP/dCMP deaminase zinc-binding protein [Streptomyces
flavogriseus ATCC 33331]
Length = 162
Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG---CPHAE 56
M V + D R + + + GL + + ++V +G V G G H E
Sbjct: 1 MVVDASDLRHLRRCVELA--AEGLRAGDEPFGSVLVDAEGEVRAEGRNRVAGGDRTRHPE 58
Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPP 87
+ A EE A Y + E C +
Sbjct: 59 FELARWAADRMTPEERATAVVYTSGEHCPMCAAAHA 94
>gi|222111027|ref|YP_002553291.1| bifunctional deaminase-reductase domain-containing protein
[Acidovorax ebreus TPSY]
gi|221730471|gb|ACM33291.1| bifunctional deaminase-reductase domain protein [Acidovorax ebreus
TPSY]
Length = 193
Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G +L V GG +A F ++ L+D +IL + +G G P +
Sbjct: 112 GTKNLWVVGGGDLAGQFYDAGLLDELILQVGSVTLGRGKPLFPRRLPSTA--LRLLDAQP 169
Query: 346 FG 347
G
Sbjct: 170 LG 171
>gi|73661428|ref|YP_300209.1| dihydrofolate reductase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72493943|dbj|BAE17264.1| putative dihydrofolate reductase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 192
Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + V + A + +++ + L + ++V G AH +
Sbjct: 81 QWIENVEKVVFSKALNHVEWSNSKLVKDHVEEEINKLKQQEGGDIVVLGSPRFAHYLMQL 140
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
LVD + S +IG+ G+P + + + + ++ + F
Sbjct: 141 NLVDEYKITISPTLIGK-GLPLF-QNIHDKVDLKLIKSETF 179
>gi|317123798|ref|YP_004097910.1| CMP/dCMP deaminase zinc-binding protein [Intrasporangium calvum
DSM 43043]
gi|315587886|gb|ADU47183.1| CMP/dCMP deaminase zinc-binding protein [Intrasporangium calvum
DSM 43043]
Length = 160
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 23/101 (22%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV---------KDGIVIGRGVTAYGG 51
M + + D F+ A+ +R + ++V V+ G
Sbjct: 1 MSLDARDLAFLRRAVGLARLALARGDE--PFGSVLVSSEGDVLFEDHNRVVAI-----DG 53
Query: 52 CPHAEVQALEE-AGEEARG-----ATAYVTLEPCSHYGRSP 86
H E A+ AG AT Y + E C +
Sbjct: 54 TQHPEF-AIARWAGSHLSPSERAVATVYTSGEHCPMCSAAH 93
>gi|41406377|ref|NP_959213.1| hypothetical protein MAP0279 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41394725|gb|AAS02596.1| hypothetical protein MAP_0279 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 152
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALE 61
D + +AL + + + ++V DG + R V A HAE+ AL
Sbjct: 4 DEDLIRSALAVAATAGPR---DVPIGAVVVGADGTELARAVNAREALGDPTAHAEILALR 60
Query: 62 EA------GEEARGATAYVTLEPCSHY 82
A G GAT VT+EPC+
Sbjct: 61 AAAAALGDGWRLEGATLAVTVEPCTMC 87
>gi|299532606|ref|ZP_07045995.1| hypothetical protein CTS44_17478 [Comamonas testosteroni S44]
gi|298719409|gb|EFI60377.1| hypothetical protein CTS44_17478 [Comamonas testosteroni S44]
Length = 215
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 34/144 (23%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + +G V E + G +
Sbjct: 38 FFHTQVFQRMHGGSQIGETGVDNQMAERSFENIGAWILGRNMFGPIRGHWPDESWQGWWG 97
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ + + + L G + + GG A
Sbjct: 98 DEPPYHVPAFVLTHHARPSLRMQGGTDFHFVTDGIASALAQAKTAAGDRDIRIGGGVATV 157
Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
F+ +RLVD I L +++G G
Sbjct: 158 RQFLQARLVDEIHLAIRPLLMGSG 181
>gi|170782870|ref|YP_001711204.1| tRNA-specific adenosine deaminase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157440|emb|CAQ02629.1| tRNA-specific adenosine deaminase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 158
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63
R+M+ AL + T P A ++ G+VIGRG HAEV+AL A
Sbjct: 10 ERWMAVALDEA-RACAETGDVPVGAVVVDAAGVVIGRGRNLREARQDPTAHAEVEALRAA 68
Query: 64 GE-----EARGATAYVTLEPCSHY 82
E GAT VTLEPC
Sbjct: 69 AEATGDRHLVGATLVVTLEPCVMC 92
>gi|315179290|gb|ADT86204.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218]
Length = 158
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-------C 52
M + D R++ + + +P A ++V +G ++ G
Sbjct: 1 MLNPTLDYRWLRHSFALAEDAK-SRGIHP-FAAVLVDANGEILLE---QINGYLPDLDMT 55
Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE + +A + T YV+ EPC+
Sbjct: 56 GHAERLIMTQASKLYRPDFLNQCTLYVSAEPCAMC 90
>gi|221069779|ref|ZP_03545884.1| bifunctional deaminase-reductase domain protein [Comamonas
testosteroni KF-1]
gi|220714802|gb|EED70170.1| bifunctional deaminase-reductase domain protein [Comamonas
testosteroni KF-1]
Length = 189
Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
L ++ G ++ + GG +A F ++ L+D +I+ +G G L L
Sbjct: 101 QPVLASMRAAAGDRNIWIVGGGDLAGQFHDAGLLDEVIVQIGSATLGRG--KPLLPRRLL 158
Query: 335 EKNFMCVRRDYFG 347
G
Sbjct: 159 SPVLQLQSVQQMG 171
>gi|326384358|ref|ZP_08206039.1| bifunctional deaminase-reductase domain protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326196956|gb|EGD54149.1| bifunctional deaminase-reductase domain protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 179
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V GG +A F + ++D +++ + + +G G P +F +
Sbjct: 109 GDRGVWVVGGGDLAAQFAAAGMLDEMLVSYAPVALGS-GRPLF----SEPFDFELIDSAR 163
>gi|9631183|ref|NP_047965.1| gp20 [Streptomyces phage phiC31]
gi|3947493|emb|CAA07144.1| gp20 [Streptomyces phage phiC31]
Length = 117
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 26/99 (26%), Gaps = 36/99 (36%)
Query: 17 FSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTA-YGGCP--------------------- 53
+ S V ++V V G G G P
Sbjct: 1 MATRADCTRS---QVGAVLVNANHEVRGTGYNGAPSGVPGCASAGACPRGQLSAVECAPN 57
Query: 54 ---------HAEVQALEEA-GEEARGATAYVTLEPCSHY 82
HAE A+ A E GAT Y T EPC
Sbjct: 58 SDYANCVADHAERNAIRHAPSAELAGATLYTTREPCPAC 96
>gi|322419555|ref|YP_004198778.1| bifunctional deaminase-reductase domain-containing protein
[Geobacter sp. M18]
gi|320125942|gb|ADW13502.1| bifunctional deaminase-reductase domain protein [Geobacter sp. M18]
Length = 183
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 3/125 (2%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ TA + V + + N + + + L +G +L V
Sbjct: 59 MAAYWPTAQGKIADYMNSLPKVVCSRTLQTAAWNNTTLVKDNAAEEVARLKQQGSGNLFV 118
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVC 351
G A ++ + IN L D L + ++ G G + G + + V
Sbjct: 119 FGSANLSKTLINGGLFDEYRLGIAPVIHGNGRL--LFSGGIKPQELELLETHPLSTGCVI 176
Query: 352 LEYIG 356
L Y
Sbjct: 177 LRYQR 181
>gi|158337465|ref|YP_001518640.1| riboflavin biosynthesis protein RibD domain-containing protein
[Acaryochloris marina MBIC11017]
gi|158307706|gb|ABW29323.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Acaryochloris marina MBIC11017]
Length = 181
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCVRRDY 345
+ + GG +A + + ++ +D IIL + ++ G GIP +
Sbjct: 105 QDIYLCGGGELAKTLLAAQHIDEIILKVNPVLFG-TGIPLFASGQPSIPTTRLQLTDHNI 163
Query: 346 FGSDVCLEYIG 356
+G+ + L +
Sbjct: 164 YGNGLVLLFYN 174
>gi|311993209|ref|YP_004010075.1| dCMP deaminase [Enterobacteria phage CC31]
gi|284178047|gb|ADB81713.1| dCMP deaminase [Enterobacteria phage CC31]
Length = 188
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 67/198 (33%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP------ 53
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLISQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCDHA 53
Query: 54 ------------------------------------------HAEVQALEEA---GEEAR 68
HAE+ A+ A G
Sbjct: 54 EDKGWLVKKPGSGLRQDGPIPKYGLDTKFRAEHSEWSKINEIHAELNAILFAARNGSSIE 113
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GAT YVTL PC ++ + + + L GI +
Sbjct: 114 GATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNIDGWDNILRDAGIEIHH 165
Query: 129 MMESEGKIFLHAYLTRQV 146
+ ++ +
Sbjct: 166 VPKTNLNKLNWYNVENYC 183
>gi|220936337|ref|YP_002515236.1| riboflavin biosynthesis protein RibD domain-containing protein
[Thioalkalivibrio sp. HL-EbGR7]
gi|219997647|gb|ACL74249.1| riboflavin biosynthesis protein RibD domain-containing protein
[Thioalkalivibrio sp. HL-EbGR7]
Length = 173
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++L L RG+ ++GG + F++ L+D + L R +++G GIP +
Sbjct: 95 EVLERLAARGLRHAYIDGGKTIQG-FLSEGLIDELTLTRVPVLLG-RGIPLF-GPLAGDV 151
Query: 337 NFMCVRRDYF 346
+ +
Sbjct: 152 YLEHLETRSY 161
>gi|297200616|ref|ZP_06918013.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|197709747|gb|EDY53781.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 221
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
R+ ++ + + P + +
Sbjct: 89 MGKRMFDAGELAWPEEAPFHTPVFVVTHTERDPWERP--------GGTTFHFVNDGIESA 140
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
LL G + + GGA +++S L+D + + ++ G G
Sbjct: 141 LLQAREAAGDRDVRIAGGAETIQQYLDSGLIDEFSITLAPVLFGTG 186
>gi|88854309|ref|ZP_01128976.1| hypothetical protein A20C1_08834 [marine actinobacterium PHSC20C1]
gi|88816117|gb|EAR25972.1| hypothetical protein A20C1_08834 [marine actinobacterium PHSC20C1]
Length = 201
Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 9/208 (4%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+ T +++S D + G A
Sbjct: 1 MPNTTCHLSISLDGFVAGPEQSLENPLGKRGLELHGWHIGDERANDADEIAAGWLMRPRG 60
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ G P+R + ++ + APV ++T + + + +
Sbjct: 61 AYVMGRNMFGPIRGEWESDWR---GWWGAEPPYHAPVFVLTHHPHEPMEMDGGTTFHFVT 117
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
G+GV + GGA+ + + +VD + L + +++G G
Sbjct: 118 DGFDAAYNLAREAADGKGVD---IAGGASTVRQALLAGVVDELTLDIAPVLLGSGER--- 171
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
L +G F V + Y
Sbjct: 172 LFDGIETFGFEPVEVLQSPLATHIRYRR 199
>gi|325126599|gb|ADY85929.1| RibD protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 107
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
E+ +T YVTLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+
Sbjct: 4 EQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGL 63
Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
V + ++ Y ++TLK A++ D+M+
Sbjct: 64 EVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLATK 107
>gi|182420308|ref|ZP_02951537.1| deoxycytidylate deaminase [Clostridium butyricum 5521]
gi|237666732|ref|ZP_04526717.1| CMP/dCMP deaminase, zinc-binding [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182375903|gb|EDT73495.1| deoxycytidylate deaminase [Clostridium butyricum 5521]
gi|237657931|gb|EEP55486.1| CMP/dCMP deaminase, zinc-binding [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 164
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M ++ A + +IVK+ +I G T
Sbjct: 1 MDRRDKHNYYLDIAETVLERGTCMRRNY---GSIIVKNDEIISTGYTGAPRGRKNCIDLD 57
Query: 54 ---------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQF 91
H+E A+ A GAT Y+ +
Sbjct: 58 SCIREKLNVPRGTHYELCRSVHSEANAIISASRRDMIGATLYLVGKDAKTKKYVENANSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 SMCKRL 123
>gi|9631768|ref|NP_048547.1| hypothetical protein PBCV1_A200R [Paramecium bursaria Chlorella
virus 1]
gi|1181363|gb|AAC96568.1| contains cytidine and deoxycytidine deaminase Zn-binding region
signature [Paramecium bursaria Chlorella virus 1]
Length = 118
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---YGGC--PHAEV 57
++ D + +A+ ++ G C+++ +I G G HAE+
Sbjct: 1 MTRLDEA-IESAIEQAKRSTGPFKH----GCVVLSGKKIISEGHNHTRKQIGTFSVHAEM 55
Query: 58 QALEEAGEE 66
AL + +
Sbjct: 56 DALWKIYDS 64
>gi|6523085|emb|CAB62343.1| putative protein [Arabidopsis thaliana]
Length = 276
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR 44
S+D FM+ A + N V +V ++G+++G+
Sbjct: 67 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQNGVILGK 104
>gi|116250987|ref|YP_766825.1| hypothetical protein RL1220 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255635|emb|CAK06716.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 213
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 28/98 (28%)
Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+F + + V + + L +
Sbjct: 84 HNFPDDPNWRGWWGDEPPFGCPVFVLTHRPRPSIEMADGTTFHFLNTTADDALQQAVRVA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG V ++ + LVD + + + I++G G
Sbjct: 144 NGKDVRIGGGPTVVRDYLKAGLVDRLHVAITPILLGRG 181
>gi|326317802|ref|YP_004235474.1| bifunctional deaminase-reductase domain-containing protein
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374638|gb|ADX46907.1| bifunctional deaminase-reductase domain protein [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 180
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
R ++ + L +GV + V+GG V SF+ L+ +++ ++IG G P
Sbjct: 94 FSSRTPREEMQELARQGVHRVYVDGG-QVVQSFLRDGLIADMVITTIPVLIGS-GRPLF- 150
Query: 330 EEGYLEKNFMCVRRDYF 346
+ V F
Sbjct: 151 GALSRDIGLKLVSSRSF 167
>gi|163851859|ref|YP_001639902.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
gi|163663464|gb|ABY30831.1| CMP/dCMP deaminase zinc-binding [Methylobacterium extorquens PA1]
Length = 301
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 33/105 (31%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV--KD--GIVIG--RGVTA----YGGCPHAEVQ 58
++M A +R V +I+ D VI R HAEV
Sbjct: 127 QWMRMASEEARISVENGGG--PFGAVILQIDDETNEVIRYWRNHNHVPEWRDPTAHAEVS 184
Query: 59 ALEEAGEEA-----------------RGAT----AYVTLEPCSHY 82
A+ A E +GAT Y + EPC
Sbjct: 185 AIRAACRELGVFSLASIKKEESKLPQKGATSHTVIYSSAEPCPMC 229
>gi|90415456|ref|ZP_01223390.1| dihydrofolate reductase-like protein [marine gamma proteobacterium
HTCC2207]
gi|90332779|gb|EAS47949.1| dihydrofolate reductase-like protein [marine gamma proteobacterium
HTCC2207]
Length = 186
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 4/161 (2%)
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
T + + + + ++ + + T P +
Sbjct: 26 HTTGNLEADLGSEDMGWHSFIESVDCMIMGRKSMDSIGSMNLTPEQWPYGDMNIIVLSRT 85
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
+ D+ +L+ L RG ++GG + SFI L++ + + +
Sbjct: 86 VKIPPTSFHSETEMYSGDIAELVKDLDARGYKHAYIDGGETIT-SFIELGLINEMTITQV 144
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+++G G+P + F +D + ++Y
Sbjct: 145 PVLLG-DGVPLF-GNLNRHVSLEKPEVLAFPNDFIQVKYTV 183
>gi|332717242|ref|YP_004444708.1| probable dihydrofolate reductase [Agrobacterium sp. H13-3]
gi|325063927|gb|ADY67617.1| probable dihydrofolate reductase [Agrobacterium sp. H13-3]
Length = 175
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG + +F+ +D I +Y ++G G PL V
Sbjct: 108 DVWMLGGGKLQMAFLERDALDEIEIYVIPEILGSGEPLFPLTGHRASP--TLVSATAIEK 165
Query: 349 D-VCLEYI 355
V Y
Sbjct: 166 GCVRFHYR 173
>gi|296282925|ref|ZP_06860923.1| tRNA-adenosine deaminase [Citromicrobium bathyomarinum JL354]
Length = 152
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCS 80
V ++++ G VI + A HAEV AL A E G +VTLEPC+
Sbjct: 27 PVGAVVMRHGEVIAQAHNAPRTLADPTAHAEVLALRAAAKALGQERLEGCDLWVTLEPCA 86
Query: 81 HY 82
Sbjct: 87 MC 88
>gi|94266763|ref|ZP_01290431.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|94270234|ref|ZP_01291686.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93450891|gb|EAT01904.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
gi|93452585|gb|EAT03162.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [delta
proteobacterium MLMS-1]
Length = 156
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 1 MPVSSFDARFMSAAL--RFSRWHVGLTSTNPSVACLIVKDG--IVIGRG-VTAYGGCP-- 53
M + D ++M+ AL G V L+V +++ G T P
Sbjct: 1 MAKAQLDQQYMALALAEAARAAERGEV----PVGALLVAADATVLVADGNRTIEYCDPAA 56
Query: 54 HAEVQALEE-----AGEEARGATAYVTLEPCSHY 82
HAE+ L A GAT YVTLEPC
Sbjct: 57 HAEIVVLRRAAALLANHRLPGATLYVTLEPCVMC 90
>gi|291303176|ref|YP_003514454.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290572396|gb|ADD45361.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 201
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG--SDVC 351
G + + + LVD + L +G G +P+ + F +V
Sbjct: 137 GSRTMWNGLLAQELVDELHLMVGPKALGGG---TPV--FAAPVELRLLGIRRFDGSDNVV 191
Query: 352 LEYIG 356
L Y
Sbjct: 192 LRYAP 196
>gi|258651625|ref|YP_003200781.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258554850|gb|ACV77792.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 204
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L +G + V G +A + + + LVD + L+ +++G G
Sbjct: 128 RELKAQGEGDITVLGSGHLARTLLAAGLVDELRLFVHPLLMGTGKRLFGELPDPRTLTLQ 187
Query: 340 CVRRDYFGSDVCLEYI 355
V R G+ V L Y
Sbjct: 188 TVARTDLGT-VALVYR 202
>gi|258654727|ref|YP_003203883.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258557952|gb|ACV80894.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 193
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
G +A I + LVD L+ + V+G G P + V + F + +
Sbjct: 126 GPTLAAQAIKAGLVDEYYLFLTSTVVGGGTRFFP---DGVRLELDLVEQRAFANGLIAAR 182
Query: 354 YI 355
Y
Sbjct: 183 YR 184
>gi|196231950|ref|ZP_03130806.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
gi|196224072|gb|EDY18586.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
Length = 215
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 33/128 (25%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + D G L + V D
Sbjct: 55 GETGIDDDFAARGFHNVGAWIMGRNMFGPVRGPWLDESWRGWWGDNPVYHKPVFVLTDHP 114
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
A + + L + + GGA+ ++ RL+D + +
Sbjct: 115 RAPLVMEGGTTFHFVTKGIRAALELAREAANGKDVRIGGGASTIRQYLRERLIDELHIAI 174
Query: 316 SQIVIGEG 323
+ +++GEG
Sbjct: 175 APVLLGEG 182
>gi|319757836|gb|ADV69778.1| riboflavin biosynthesis protein RibD domain protein [Streptococcus
suis JS14]
Length = 219
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 2/113 (1%)
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
T + I K + G + G + + + + L
Sbjct: 105 ATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYRRTDSGGGLTNKLLENGL 164
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFG-SDVCLEYIGKN 358
+D I L S +G EK N + + L Y KN
Sbjct: 165 IDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSLRYAVKN 217
>gi|300789274|ref|YP_003769565.1| deaminase-reductase domain-containing protein [Amycolatopsis
mediterranei U32]
gi|299798788|gb|ADJ49163.1| deaminase-reductase domain-containing protein [Amycolatopsis
mediterranei U32]
Length = 241
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKNFMCVRRD 344
G + V GG + + + L+D + L+ + +++GEG P + V
Sbjct: 143 GGKDVAVAGGGELLRQVLAAGLLDQLELHIAPVLLGEGQRLFGPGLGLGADDGIELVPAR 202
Query: 345 YFG 347
Sbjct: 203 VVD 205
>gi|163848007|ref|YP_001636051.1| deaminase-reductase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222525891|ref|YP_002570362.1| bifunctional deaminase-reductase domain-containing protein
[Chloroflexus sp. Y-400-fl]
gi|163669296|gb|ABY35662.1| bifunctional deaminase-reductase domain protein [Chloroflexus
aurantiacus J-10-fl]
gi|222449770|gb|ACM54036.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
Y-400-fl]
Length = 185
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
N I +L + G+ +L+ G + +S + L+D L +V+G G
Sbjct: 89 WNNSIIIRSNVYDELSRLKQQTGL-DILIFGSGTLVNSLMQYDLIDEYRLMVFPVVVGSG 147
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358
++ +K+ + F S V L Y
Sbjct: 148 --KRLFQDRSEKKSLKLIETKTFSSGVVVLSYKPDK 181
>gi|209879105|ref|XP_002140993.1| cytidine/deoxycytidylate deaminase family protein
[Cryptosporidium muris RN66]
gi|209556599|gb|EEA06644.1| cytidine/deoxycytidylate deaminase family protein
[Cryptosporidium muris RN66]
Length = 189
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 1 MPVSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-----GGCP 53
M S + FM AL+++ T P V C++V ++ I
Sbjct: 1 MTYSEREVLFFMKEALKWATKA-FDTDEIP-VGCILVNRETKEIESAAHNETNISCNATR 58
Query: 54 HAEVQALEEAGEEA 67
H EV ALE ++
Sbjct: 59 HCEVVALERLADKL 72
>gi|269956586|ref|YP_003326375.1| bifunctional deaminase-reductase domain-containing protein
[Xylanimonas cellulosilytica DSM 15894]
gi|269305267|gb|ACZ30817.1| bifunctional deaminase-reductase domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 180
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L T G SLL G +++ + LVD + L + +++GEG S
Sbjct: 104 ALATQAAGDKWVSLL---GGSISRQCLLLGLVDELHLDVAPVLLGEG--ISLFAGLGQRI 158
Query: 337 NFMCVRRDYFGSDVCLEYIG 356
V F S+ L Y
Sbjct: 159 ELERVETSAFASETHLRYRV 178
>gi|159491366|ref|XP_001703639.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270606|gb|EDO96446.1| predicted protein [Chlamydomonas reinhardtii]
Length = 61
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT 47
M+ A + N V +IV D +++G G
Sbjct: 1 MALAFLSAERSK---DPNKQVGAVIVNADNVILGIGYN 35
>gi|326536808|ref|YP_004301240.1| dCMP deaminase [Aeromonas phage 65]
gi|312263154|gb|ADQ53410.1| dCMP deaminase [Aeromonas phage 65]
Length = 179
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 45/115 (39%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC----PHA------------ 55
AL S + V +IVK+G VI G G HA
Sbjct: 9 MALAVSNESKC---PSHKVGTVIVKNGRVISTGYNGTRAGGINPDEHAINMGWAERAVDG 65
Query: 56 ----------------------EVQALEEA---GEEARGATAYVTLEPCSHYGRS 85
E+ AL A G+ GAT +L PCS+ +
Sbjct: 66 VRLYPKYEDEYSSWANTHVIHSEMNALLYAARSGQSVDGATLVTSLSPCSNCAKH 120
>gi|163961159|gb|ABY50083.1| cytosine deaminase [Candida tropicalis]
Length = 120
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 34 LIVKDGIVIGRGVTAY--GGCP--HAEVQALEEA----GEEARGATAYVTLEPCSHY 82
+I DG V+G+G G H E+ ALE+A G+ + T Y TL PC+
Sbjct: 1 IISSDGKVLGKGHNERIQKGSAILHGEMSALEDAGRLPGKAYKDCTIYTTLSPCNMC 57
>gi|298249278|ref|ZP_06973082.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297547282|gb|EFH81149.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 179
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+++V G + S + LVD L I++G G +G + + F
Sbjct: 110 KNIVVSGSGRLVQSLMQFGLVDEYSLLVYPIILGAGRR--LFSDGLNTSSLRLIEARPFS 167
Query: 348 SD-VCLEYIGKN 358
+ V L Y +
Sbjct: 168 NGVVLLRYQPER 179
>gi|302562650|ref|ZP_07314992.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
gi|302480268|gb|EFL43361.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
Length = 185
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-E 353
G +A I + LVD L+ + V+G G P + + V + F S +
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFVTTSVVGGGKRFFP---DGVRLDLDLVEQRAFDSGLIYAR 181
Query: 354 YI 355
Y
Sbjct: 182 YR 183
>gi|124025482|ref|YP_001014598.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. NATL1A]
gi|123960550|gb|ABM75333.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. NATL1A]
Length = 155
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
M+ L +R VG P +A +I+ K G IG G HAE+ AL +A
Sbjct: 1 MTRLLTKARL-VGERGEVP-IAAVILDKKGRCIGYGGNRRESMKDPLGHAELVALRQASW 58
Query: 65 ----EEARGATAYVTLEPCSHY 82
T V LEPC
Sbjct: 59 IKNDWRFNDCTLIVNLEPCPMC 80
>gi|332672108|ref|YP_004455116.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
484]
gi|332341146|gb|AEE47729.1| CMP/dCMP deaminase zinc-binding protein [Cellulomonas fimi ATCC
484]
Length = 161
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---YGGCPHAE 56
M VS D + L +R + ++V G V+ G H E
Sbjct: 1 MAVSDVDLAHLRRCLELAREALDDGDE--PFGSVLVDAGGTVLLADRNRVKDGDGTRHPE 58
Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHY 82
++ A G T Y + E C
Sbjct: 59 LEIARWAAAHLPVEERAGCTVYTSGEHCPMC 89
>gi|297196690|ref|ZP_06914088.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297153350|gb|EFH32319.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 215
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+++ GG A S +++ LVD + L+ + +V+G G +PL G + +
Sbjct: 150 DVVLMGGGATVASALDAGLVDELTLHLAPVVLGAG---TPLFTGVARRALVQRSVT 202
>gi|284044525|ref|YP_003394865.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283948746|gb|ADB51490.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 188
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+LV GG A S LVD L I IG G SP + V + F
Sbjct: 118 ILVHGGPDFATSLTRLGLVDEYQLTTVPIAIGAG--HSPFADLEEHLKLDVVAEERF 172
>gi|212702197|ref|ZP_03310325.1| hypothetical protein DESPIG_00208 [Desulfovibrio piger ATCC 29098]
gi|212674402|gb|EEB34885.1| hypothetical protein DESPIG_00208 [Desulfovibrio piger ATCC 29098]
Length = 156
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 29/129 (22%), Gaps = 36/129 (27%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------------- 46
MP FMS L V + VKD ++ G
Sbjct: 1 MPWPD---YFMSITYLVRERSTCLRRK---VGAIAVKDRHILATGYNGAPSGVRHCLETG 54
Query: 47 -------------TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQ 90
HAE + +A G GA Y T PC+ +
Sbjct: 55 CLREQMGIPSGQRHEICRGLHAEQNVIIQAAVHGVSIAGAELYCTTFPCAMCSKMLINCG 114
Query: 91 FIIECGIRR 99
Sbjct: 115 IKHIWYSEH 123
>gi|261407074|ref|YP_003243315.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261283537|gb|ACX65508.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 183
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L+V GG + + LVD IV G G P L N FG
Sbjct: 114 KNLVVNGGPGLGSTLAQLGLVDEYHFLVQPIVAGHG--PQLLGGVRDRLNLKLTETKPFG 171
Query: 348 SD-VCLEYIG 356
S V L Y
Sbjct: 172 SGVVVLHYTP 181
>gi|152996717|ref|YP_001341552.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1]
gi|150837641|gb|ABR71617.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1]
Length = 158
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG-------C 52
M +++ D F+ + + +P A ++V D V+ +T G
Sbjct: 1 MKLNTKDTEFLRQSFALAEEAKQQ-GIHP-FAAILVDDEDNVL---MTQVNGYLPDFDMT 55
Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE + + A + T YV+ EPC+
Sbjct: 56 GHAERKLMTRASKAYRPDFLAKCTMYVSAEPCAMC 90
>gi|326772679|ref|ZP_08231963.1| cytidine and deoxycytidylate deaminase family protein [Actinomyces
viscosus C505]
gi|326637311|gb|EGE38213.1| cytidine and deoxycytidylate deaminase family protein [Actinomyces
viscosus C505]
Length = 196
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGE 65
M AL + G P V +++ +G+V+ A + HAE++AL AG
Sbjct: 54 MLRALELA-RAAGEAGEVP-VGAVVLSPEGVVLAEAANAREAEHDPTAHAEIRALRAAGA 111
Query: 66 -----EARGATAYVTLEPCSHYGR----SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116
G T VTLEPC+ + + R VR +
Sbjct: 112 ALGDSHLDGCTLVVTLEPCTMCAGAIVLARVARLVLGAWEPRTGACGSVRDVVRDTRANH 171
Query: 117 QWLSQKG 123
Q + G
Sbjct: 172 QVEVRAG 178
>gi|288921824|ref|ZP_06416041.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288346848|gb|EFC81160.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 219
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 1/117 (0%)
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + V + + D + L
Sbjct: 86 PWEDLGTDREWRGWWGPNPPFHTPVFVLTHHPRPSIEMEGGTVFHFIDAAPKQALDLARE 145
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
G + + GG + F+ + L+DS+ + I++G G + LE+ F
Sbjct: 146 AAGDLDVRIGGGPTIVRDFLAADLIDSMHVALVPILLG-RGTRLWDGQEGLEERFDI 201
>gi|126432818|ref|YP_001068509.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
JLS]
gi|126232618|gb|ABN96018.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp.
JLS]
Length = 177
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ + ++ G + V GG +A F+ + LVD +I+ + +G G
Sbjct: 86 HPVHTFAGDVTELHPELVAAAGGKDVWVVGGGELAAQFVAASLVDEMIVSYAPCTLGAGS 145
Query: 325 IPSPL 329
P+
Sbjct: 146 PVLPI 150
>gi|331004720|ref|ZP_08328174.1| hypothetical protein HMPREF0491_03036 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409099|gb|EGG88557.1| hypothetical protein HMPREF0491_03036 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 160
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPHA 55
MP ++ + S+ N ++V + G ++ +T HA
Sbjct: 1 MPY-KKHEYYLRRCIEISQNARNN--GNTPFGAILVDEYGKILLEQENIEITGKICTGHA 57
Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHY 82
E E A T Y T EPC+
Sbjct: 58 ETTLAERASHLYSKEFLWRCTLYTTAEPCAMC 89
>gi|326801452|ref|YP_004319271.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
gi|326552216|gb|ADZ80601.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
Length = 205
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 2/127 (1%)
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
+ +LT ++ + + ++
Sbjct: 27 YWNDEIEHHQLTILQGVKLMLFGRTTYDIMANYWPTNAAAHENKQITKLMNNIHKIVFTS 86
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
+L +I+ + + G +L+ G ++A +N LVD + L+ +
Sbjct: 87 SLKAISWKNSIVKRELKQEDIHRLKQETHG--DILILGSGSIASQLLNLDLVDELHLFIN 144
Query: 317 QIVIGEG 323
I++G G
Sbjct: 145 PIILGSG 151
>gi|295397471|ref|ZP_06807554.1| dihydrofolate reductase family protein [Aerococcus viridans ATCC
11563]
gi|294974271|gb|EFG50015.1| dihydrofolate reductase family protein [Aerococcus viridans ATCC
11563]
Length = 177
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
NI + + KL+ +G + + GG + F+ + +D I+ I++G+G
Sbjct: 89 NIHFVKPGQIVKLMLAKKKQG-HHIYLYGGGIMLKPFMAANAIDEYIIGTVPIIMGKG-- 145
Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
E + D G Y +
Sbjct: 146 KPLFYELDESIPLQLDQVDVMGGLTIHIYHRR 177
>gi|262194682|ref|YP_003265891.1| bifunctional deaminase-reductase domain protein [Haliangium
ochraceum DSM 14365]
gi|262078029|gb|ACY13998.1| bifunctional deaminase-reductase domain protein [Haliangium
ochraceum DSM 14365]
Length = 209
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G +A S + + +VD + L +V+G G LE G + + + +
Sbjct: 127 LQVHGSPILARSLLKAGVVDELNLMMFPVVLGGG--KRLLEPGAVAAGMKLISQASTDNG 184
Query: 350 V-CLEYIG 356
+ L Y
Sbjct: 185 IVLLRYAR 192
>gi|111017813|ref|YP_700785.1| DNA-binding protein [Rhodococcus jostii RHA1]
gi|110817343|gb|ABG92627.1| possible DNA-binding protein [Rhodococcus jostii RHA1]
Length = 214
Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 2/137 (1%)
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINI 267
E R D P V +
Sbjct: 63 WSQGIGAEIMGRRKFGPHSGDWPDDGWRGWWGDEPPFQTPVFVMSHYPHPSIDFPNGTSF 122
Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
+ D + L + + GG ++ F+ + L+D + L I +G G+
Sbjct: 123 HFVDAPPDEVLRMAQEAANGQDVRIGGGPSIVRQFLQADLIDFMHLVIVPITLG-RGVSL 181
Query: 328 PLEEGYLEKNFMCVRRD 344
+E F
Sbjct: 182 WEGLEGIEDRFTVETVT 198
>gi|221638686|ref|YP_002524948.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides KD131]
gi|221159467|gb|ACM00447.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides KD131]
Length = 144
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 40 IVIGRGVTA----YGGCPHAEVQALEEA----GEEARGATAYVTLEPCSHY 82
V+ R HAE+ A+ A GE G YVTLEPC
Sbjct: 29 QVVARAGNRCRELSDPTAHAEMLAIRAACATLGERLTGCDLYVTLEPCPMC 79
>gi|126725027|ref|ZP_01740870.1| bifunctional deaminase-reductase, C-terminal [Rhodobacterales
bacterium HTCC2150]
gi|126706191|gb|EBA05281.1| bifunctional deaminase-reductase, C-terminal [Rhodobacterales
bacterium HTCC2150]
Length = 185
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+L+ +L G ++GG V SF+ L+D ++L + I+IG+G
Sbjct: 97 PPELMGMLTDLGWNRAYIDGG-QVIQSFLRDDLIDDMVLTQIPILIGKG 144
>gi|124010413|ref|ZP_01695056.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microscilla marina ATCC 23134]
gi|123983508|gb|EAY23982.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Microscilla marina ATCC 23134]
Length = 195
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
S+ + GG +A +L+D +IL + IV+G GIP + +
Sbjct: 122 KSIWLCGGGHLAGLLAQHQLIDEVILKVNPIVLG-QGIPLF-AGLSSPLTLQTAQHKQYK 179
Query: 348 SDVCL 352
+ V L
Sbjct: 180 NGVLL 184
>gi|260469655|ref|ZP_05813818.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259028567|gb|EEW29880.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 195
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ V GGA A + I + LVD L+ + V+G G + G+ +
Sbjct: 128 DIAVFGGAGFASALIAAGLVDEFQLFVNPAVLGA-GRRIFDQGGFRKLRL 176
>gi|194476730|ref|YP_002048909.1| cytidine/deoxycytidylate deaminase family protein [Paulinella
chromatophora]
gi|171191737|gb|ACB42699.1| cytidine/deoxycytidylate deaminase family protein [Paulinella
chromatophora]
Length = 157
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 1 MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCP 53
M S D +MS LR T + +A +I+ G +G G +
Sbjct: 1 MNELSLDTYRYWMSRLLRC--VSRMKTDCDVPIAAVILNGAGQCVGWGRNSREKNQDPMG 58
Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ AL +A T VTLEPC
Sbjct: 59 HAELIALRQAAVLRGSWRFDDCTLIVTLEPCPMC 92
>gi|76798968|ref|ZP_00781169.1| ComE operon protein 2. [Streptococcus agalactiae 18RS21]
gi|76585689|gb|EAO62246.1| ComE operon protein 2. [Streptococcus agalactiae 18RS21]
Length = 74
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT 47
M S++ FM+ A S+ + V ++VK+ +I G
Sbjct: 1 MNRLSWEDYFMANAELISKRSTCDRAF---VGAVLVKNNRIIATGYN 44
>gi|302530659|ref|ZP_07283001.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302439554|gb|EFL11370.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 213
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 26/99 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P + + + + L
Sbjct: 82 PHRGPWENYDWQGWWGDEPPFRTPVFVLTHHERPSITLGQTTFHFLNTTPAEALAQAKKA 141
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + + GG F+ + L+D++ + + + +G+G
Sbjct: 142 AGDKDVRIGGGVTTVRQFLEAGLIDTLHIAVAPVELGDG 180
>gi|254570505|ref|XP_002492362.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
pastoris GS115]
gi|238032160|emb|CAY70110.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia
pastoris GS115]
gi|328353625|emb|CCA40023.1| hypothetical protein PP7435_Chr3-1080 [Pichia pastoris CBS 7435]
Length = 243
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--NSR---LVDSIILYRSQIVIGEG 323
+ +L IL + S++VEGGA + + + LV S+I+ + +G+
Sbjct: 153 HRGKMSWFAILKILKDAEIHSVMVEGGATIINDLLICRQNSVPLVASLIITVGPVYLGKD 212
Query: 324 GI 325
G+
Sbjct: 213 GV 214
>gi|111021134|ref|YP_704106.1| tRNA-specific adenosine deaminase [Rhodococcus jostii RHA1]
gi|110820664|gb|ABG95948.1| probable tRNA-specific adenosine deaminase [Rhodococcus jostii
RHA1]
Length = 123
Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 38 DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEPCSHY 82
DG+ + R V + HAE+ AL A G GAT VTLEPC+
Sbjct: 6 DGVEVSRAVNSREAMSDPTAHAEIIALRAAARVYGDGWRLEGATLAVTLEPCTMC 60
>gi|253574668|ref|ZP_04852008.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845714|gb|EES73722.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786
str. D14]
Length = 172
Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 30/120 (25%), Gaps = 39/120 (32%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP------- 53
+D FM A S V ++V+ ++G G P
Sbjct: 5 KRKDWDTYFMDIAYMVSTRSRCNRRH---VGAVLVQGKKLLGTAYNGAPSGVPDCSEAGC 61
Query: 54 ---------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE L + G++ YVT EPC
Sbjct: 62 MIAEEYELVVEDGQEKMVKKQRCVRTIHAEQNLLLFTDRIDREGSSVYVTDEPCWTCANM 121
>gi|284033835|ref|YP_003383766.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283813128|gb|ADB34967.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 201
Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
+ G ++V GG + H+ + + L D ++L+ + +V+G+G P G
Sbjct: 119 AIAQARKAAGDKDVVVMGGGEICHAVLAAGLADVLLLHVAPVVLGDGTRLYPAGPG 174
>gi|305664624|ref|YP_003860911.1| cytidine deaminase [Maribacter sp. HTCC2170]
gi|88708641|gb|EAR00877.1| cytidine deaminase [Maribacter sp. HTCC2170]
Length = 160
Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGG----CPHAEV 57
++ D M A+ +R +N V +++ +G + G AE
Sbjct: 19 LNEQDRDLMHMAIE-ARKDAYAPYSNFMVGAAVLLANGKTV-IGSNQENASYPSGLCAER 76
Query: 58 QALEEAGEEARGATA 72
A+ +AG + G T
Sbjct: 77 VAVFQAGAKYPGVTI 91
>gi|284042870|ref|YP_003393210.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283947091|gb|ADB49835.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 190
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
R L+ GGA +A S + + LVD I + ++IGEG P + R
Sbjct: 116 KRETDGLITVGGAHLAASLMRAELVDQIEVLVYPVLIGEGTPLLPELRDRVGLELEATRT 175
Query: 344 DYFGSDVCLEYIGKN 358
V L Y +
Sbjct: 176 FRQSGVVSLRYRVRR 190
>gi|269928874|ref|YP_003321195.1| bifunctional deaminase-reductase domain-containing protein
[Sphaerobacter thermophilus DSM 20745]
gi|269788231|gb|ACZ40373.1| bifunctional deaminase-reductase domain protein [Sphaerobacter
thermophilus DSM 20745]
Length = 185
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYF 346
+L+ G A +A + + L+D L + IV+G G +PL + ++ + F
Sbjct: 114 KDILLFGSANLASTLMRHGLIDEYRLGVAPIVLGGG---NPLFKPSPDRMQMTLIEARPF 170
Query: 347 G-SDVCLEYIG 356
V L Y
Sbjct: 171 STGCVLLRYQP 181
>gi|15966367|ref|NP_386720.1| hypothetical protein SMc02439 [Sinorhizobium meliloti 1021]
gi|307313046|ref|ZP_07592673.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
gi|15075638|emb|CAC47193.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306899365|gb|EFN29999.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
Length = 181
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
L + ++ + + V + R + N D + L R ++
Sbjct: 55 LMAAYWPSSRDHIAAFMNGVEKYVFSRTLRSADWNNTTLVSGDAADEVRRLKEREGGAIF 114
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGSD- 349
+ G A A + I LVD L + +++G+G +PL + E+ S
Sbjct: 115 IFGSADFASTLIAQGLVDEYRLGINPVLLGKG---TPLFQNVPERTKLDLTHVRPLKSGV 171
Query: 350 VCLEYIGKN 358
V L Y ++
Sbjct: 172 VILHYRPES 180
>gi|284041866|ref|YP_003392206.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283946087|gb|ADB48831.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 211
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 3/175 (1%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
+ +T + ++ D + G ++H A + G +
Sbjct: 1 MTAVTASMMMTLDGFVAGPNVRVPDNPGGDGGERLHEWIAGLASWRERQGLEGGERNADD 60
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ + + ++ F APV ++T P + +
Sbjct: 61 DLVRAWFDATGAVVMGRLMFDTGEQHWGEDPPFRAPVFVLTNRSRPHVVKQGGTSYTFVT 120
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L + R V V GGA FI + L+D + L+ ++ GEG
Sbjct: 121 DGIESALAQARAAAGERNVD---VAGGADTVQQFIRAGLLDELHLHVLPVLFGEG 172
>gi|149039572|gb|EDL93734.1| deaminase domain containing 1 (predicted) [Rattus norvegicus]
Length = 91
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
++M A+R ++ + V CL+V + V+G+G
Sbjct: 23 EKWMEEAMRMAKEALENIEV--PVGCLMVYNNEVVGKGRNEVN 63
>gi|308177903|ref|YP_003917309.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307745366|emb|CBT76338.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 252
Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 33/86 (38%)
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
D ++++ L +G + EGG + F + +VDS + S V+ G+
Sbjct: 160 CDPQEIIAYLQAQGHGFIHAEGGPHIFGQFAAAGVVDSACISYSPAVVAGDGMRIAAHGP 219
Query: 333 YLEKNFMCVRRDYFGSDVCLEYIGKN 358
++F S + +Y K
Sbjct: 220 QTFQSFDLHALFEEDSMLFCDYRLKK 245
>gi|307321052|ref|ZP_07600458.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|306893327|gb|EFN24107.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
Length = 111
Score = 44.2 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGS 348
+ + G A A + I LVD L + +++G+G +PL + E+ S
Sbjct: 43 IFIFGSADFASTLIAQGLVDEYRLGINPVLLGKG---TPLFQNVPERTKLDLTHVRPLKS 99
Query: 349 D-VCLEYIGKN 358
V L Y ++
Sbjct: 100 GVVILHYRPES 110
>gi|222084811|ref|YP_002543340.1| pyrimidine reductase protein (dihydrofolate reductase family)
[Agrobacterium radiobacter K84]
gi|221722259|gb|ACM25415.1| pyrimidine reductase protein (dihydrofolate reductase family)
[Agrobacterium radiobacter K84]
Length = 186
Score = 44.2 bits (102), Expect = 0.037, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ + + A K D+ + L + V
Sbjct: 61 AYWQTATETPDIAAYMNGIAKIAASRTMGKAEWNNTRVVSDIAAEVKKLKEEPGKIMFVF 120
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
G A V + + LVD I + +V+G G + ++ + + V L
Sbjct: 121 GSAEVTDVLLKAGLVDEIRICLVPVVLGAGNPH--FKPAGEQRPMKLIDSRPLKTGAVIL 178
Query: 353 EYIG 356
Y
Sbjct: 179 RYEP 182
>gi|326940893|gb|AEA16789.1| pyrimidine reductase [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 181
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LL+ G + + + L+D + +++G G + + R G
Sbjct: 110 QNLLIYGSGELIQTLMQHDLIDEYHFIINPVIVGSGKRLFKDQSNTKALKLIETRTTNSG 169
Query: 348 SDVCLEYIGKN 358
V L Y +
Sbjct: 170 V-VILSYQPEK 179
>gi|319794452|ref|YP_004156092.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus EPS]
gi|315596915|gb|ADU37981.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus EPS]
Length = 214
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 2/129 (1%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + V + + L
Sbjct: 88 NTTDPWNGWWGSNPPFRHPVFVLTHHAREPLVMEGGTTFTFVTDGIESALDQARRAAAGK 147
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GGA VA ++ + LVD + L+ + ++G+G E+ K V+
Sbjct: 148 DVALAGGAHVARQYLKAGLVDEVQLHLAPTLLGDGER--LFEDADALKGLAMVKTVATPD 205
Query: 349 DVCLEYIGK 357
V L++ K
Sbjct: 206 VVHLKFARK 214
>gi|228940249|ref|ZP_04102820.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973165|ref|ZP_04133755.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228979748|ref|ZP_04140071.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis Bt407]
gi|228779965|gb|EEM28209.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis Bt407]
gi|228786568|gb|EEM34557.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228819375|gb|EEM65429.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 166
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LL+ G + + + L+D + +++G G + + R G
Sbjct: 95 QNLLIYGSGELIQTLMQHDLIDEYHFIINPVIVGSGKRLFKDQSNTKALKLIETRTTNSG 154
Query: 348 SDVCLEYIGKN 358
V L Y +
Sbjct: 155 V-VILSYQPEK 164
>gi|304373629|ref|YP_003858374.1| Cd dCMP deaminase [Enterobacteria phage RB16]
gi|299829585|gb|ADJ55378.1| Cd dCMP deaminase [Enterobacteria phage RB16]
Length = 174
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 44/170 (25%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG------------------------ 45
M A+ + G + V +IV +G V+ +G
Sbjct: 5 HMIRAI---QHSQGSRCISTRVGAVIVMNGRVVSQGSNNTVDSDCRCADHNEHMLNDEGK 61
Query: 46 ---VTAYGGCP-------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
V HAE++AL A G A Y T PC + +
Sbjct: 62 LKAVHRPEHSAWSNDNEIHAEMKALLSAHTNGIMLNNAELYTTASPCPNCAKHIE----W 117
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142
V D R + + L + G V+++ E + ++
Sbjct: 118 YVAIGAITAVYYLDKYDRGNDEWISRLQKYGCRVEQIKREELEPHINFSN 167
>gi|260554140|ref|ZP_05826400.1| dihydrofolate reductase [Acinetobacter sp. RUH2624]
gi|260404721|gb|EEW98231.1| dihydrofolate reductase [Acinetobacter sp. RUH2624]
Length = 191
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + T L P E + + + + + +L+
Sbjct: 47 TVIWGRATYQMMHNYWPTMLSNPEASEHERNHAEWIEKTEKIVFSTTLDTVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + L ++ G AH + L+D + S ++IG G+P +
Sbjct: 107 DHVEEEINKLKQQPGKDMVILGSPRFAHYLMQLGLIDEYKITVSPVLIGS-GLPLF-QGI 164
Query: 333 YLEKNFMCVRRDYF 346
+ N + F
Sbjct: 165 QQKTNLKLIENKTF 178
>gi|225685288|gb|EEH23572.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 241
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 11/117 (9%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD------GIVIGRGVTA----YGGCPHAEVQ 58
+M A + +G + +IV G +I GV H E+
Sbjct: 49 YWMRRA-NQALSDLGSPCPFAAFGTVIVNHTKQGELGDLICIGVNENSKTGNPTSHGEIA 107
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
A+ + + + P + + + G
Sbjct: 108 AITNCTKVLTDKSGRFKMTPSQTLNAFQELTLYSNAESCSMCTSAIRWAGFKEYVYG 164
>gi|222082119|ref|YP_002541484.1| hypothetical protein Arad_8671 [Agrobacterium radiobacter K84]
gi|221726798|gb|ACM29887.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 158
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHA 55
M D F+ + + N ++V DG V+ AY HA
Sbjct: 1 MTAPLNDEVFLRRSFEVAARARLN--GNHPFGAILVGPDGTVLMEQENAYNPTQDMTGHA 58
Query: 56 EVQALEEAGEE-----ARGATAYVTLEPCSHY 82
E + A ++ Y + EPC+
Sbjct: 59 ERVLMTRASQQYSPGFLVQCAMYTSAEPCAMC 90
>gi|264680902|ref|YP_003280812.1| bifunctional deaminase-reductase-like protein [Comamonas
testosteroni CNB-2]
gi|299530893|ref|ZP_07044307.1| bifunctional deaminase-reductase-like protein [Comamonas
testosteroni S44]
gi|262211418|gb|ACY35516.1| bifunctional deaminase-reductase-like protein [Comamonas
testosteroni CNB-2]
gi|298721114|gb|EFI62057.1| bifunctional deaminase-reductase-like protein [Comamonas
testosteroni S44]
Length = 189
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
L ++ G ++ + GG +A F ++ L+D +I+ +G G L L
Sbjct: 101 RPVLASMRAAAGDKNIWIVGGGDLAGQFHDAGLLDEVIVQIGSATLGRG--KPLLPRRLL 158
Query: 335 EKNFMCVRRDYFGS 348
G
Sbjct: 159 SPVLQLQSVQQMGP 172
>gi|209520478|ref|ZP_03269237.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
H160]
gi|209499072|gb|EDZ99168.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
H160]
Length = 220
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 28/121 (23%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
D + G + K + V +
Sbjct: 62 DFAARGFQNVGAWILGRNMFGPIRGDWPDTNWKGWWGDSPPYHVPVFILTHHARPPIEME 121
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ + L + + GG ++ L+D + + + +++G
Sbjct: 122 GGTIFHFITGGIREALDRAREAAAGMDVRIGGGPDTIRQYLRESLIDELHIAIAPVLLGR 181
Query: 323 G 323
G
Sbjct: 182 G 182
>gi|120401263|ref|YP_951092.1| bifunctional deaminase-reductase-like protein [Mycobacterium
vanbaalenii PYR-1]
gi|119954081|gb|ABM11086.1| bifunctional deaminase-reductase-like protein [Mycobacterium
vanbaalenii PYR-1]
Length = 173
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG VA F+ + LVD +I+ + +G G P+ + V
Sbjct: 109 KNVWLVGGGDVAAQFVAAGLVDEMIVSYAPCTLGAGSRVLPM-----RSEWALVSSAVNA 163
Query: 348 SDVCLEYIG 356
VC +
Sbjct: 164 DFVCAHWRR 172
>gi|257880878|ref|ZP_05660531.1| dihydrofolate reductase [Enterococcus faecium 1,231,502]
gi|294622974|ref|ZP_06701865.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium U0317]
gi|257816536|gb|EEV43864.1| dihydrofolate reductase [Enterococcus faecium 1,231,502]
gi|291597626|gb|EFF28786.1| riboflavin biosynthesis protein RibD C-domain protein [Enterococcus
faecium U0317]
gi|315162292|gb|EFU06309.1| riboflavin biosynthesis protein RibD protein [Enterococcus faecalis
TX0645]
Length = 176
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P V + + I+ + LL L +
Sbjct: 53 WNTSHQVVTELSPQEWVYNKFTTYVLTHKECNSSQQIHFTSENPVLLLERLKQEAGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + ++ ++D + ++G G L E + +
Sbjct: 113 ICGGANLVQQLVSKNMIDKYYISVIPTLLGNGVR--LLGNIDREIKLRLCKTQTYNGITD 170
Query: 352 LEYIGK 357
L Y+ +
Sbjct: 171 LIYMRR 176
>gi|312130588|ref|YP_003997928.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
gi|311907134|gb|ADQ17575.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
Length = 176
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ +GG V + + L+D +I+ + +G G + G+ E + +
Sbjct: 107 RNIYCDGGGQVIRTLLEHHLIDEMIISIVPVTLGSGVR--LFQAGFPEAKWSLHEVKAYD 164
>gi|288574413|ref|ZP_06392770.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570154|gb|EFC91711.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 161
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 32/100 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP---------- 53
+D F+ A S T ++VKD ++I G G P
Sbjct: 8 DWDTYFIKIAQVVSDRS---TCLRRRYGAVLVKDHVIISTGYNGACRGEPNCVDVGVCHR 64
Query: 54 -----------------HAEVQALEE-AGEEARGATAYVT 75
HAE A+ E+ G T Y+
Sbjct: 65 EALKIPKGERYELCVAVHAEQNAIINGNPEKMVGGTIYIA 104
>gi|220934212|ref|YP_002513111.1| tRNA-specific adenosine deaminase [Thioalkalivibrio sp. HL-EbGR7]
gi|219995522|gb|ACL72124.1| tRNA-specific adenosine deaminase [Thioalkalivibrio sp. HL-EbGR7]
Length = 162
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH--- 54
S D +M + V ++V+DG ++G G H
Sbjct: 7 KPSDEDQHWMRH--ALELAARAEAAGEVPVGAVLVRDGELLGEGCNGPIAAHDPTAHAEI 64
Query: 55 --AEVQALEEAGEEARGATAYVTLEPCSHY 82
A GAT YVTLEPC
Sbjct: 65 AALRAAAARVGNYRLPGATLYVTLEPCPMC 94
>gi|15805819|ref|NP_294517.1| hypothetical protein DR_0793 [Deinococcus radiodurans R1]
gi|6458507|gb|AAF10372.1|AE001934_3 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 182
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G + V+GG V SFI + L+D + + R I++G G P + + V+
Sbjct: 109 GAKGVYVDGG-QVLQSFIRAELLDELTVTRLPILLG-QGRPLF-GPLEADVRWEHVQTRV 165
Query: 346 FG--SDVCLEYIG 356
F V Y
Sbjct: 166 FDRTGTVQSTYRR 178
>gi|224110294|ref|XP_002315474.1| predicted protein [Populus trichocarpa]
gi|118483375|gb|ABK93588.1| unknown [Populus trichocarpa]
gi|222864514|gb|EEF01645.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI--------VKDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V + ++ +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYKGV-DSGDGGPFGAVVVLNDEVVVACHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAIREACKKLNQIELSDCEIYASCEPCPMC 114
>gi|225389259|ref|ZP_03758983.1| hypothetical protein CLOSTASPAR_03005 [Clostridium asparagiforme
DSM 15981]
gi|225044673|gb|EEG54919.1| hypothetical protein CLOSTASPAR_03005 [Clostridium asparagiforme
DSM 15981]
Length = 181
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
L+P E + + + ++ + + D+ +L+ +L R ++ + GGA +
Sbjct: 62 QLSPDSWPYEGKECYVVTSQFLEDTDEVTFWPGDVWELVFLLKQRSGKAIWLVGGAKLLK 121
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
SF+ LVD + +++G+ G+P L Y E+
Sbjct: 122 SFMEQELVDQYWISTLPVILGK-GMPLFLPGDYGER 156
>gi|126644134|ref|XP_001388203.1| cytidine and deoxycytidylate deaminase family [Cryptosporidium
parvum Iowa II]
gi|126117276|gb|EAZ51376.1| cytidine and deoxycytidylate deaminase family, putative
[Cryptosporidium parvum Iowa II]
Length = 186
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 19/145 (13%)
Query: 30 SVACLIVK--DGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-------GATAYVTL 76
V C+IV + G H E+ ALE+ + + +T +T
Sbjct: 11 PVGCVIVNRTTKEIESEAHNETNISRNGTRHCEIVALEKLIVKLKSTSGKINNSTRLITQ 70
Query: 77 EPCSHYGRSPPC------AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
+ F+ + +D + G + G
Sbjct: 71 NQDEYSNTRFRINLGDIYDLFVTVEPCIMCIGFIDQMGIHNIFYGCKNYRFGGCGSVLDY 130
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLK 155
K + E S LK
Sbjct: 131 HHLNKSSKIILTSGICENESIKILK 155
>gi|325003196|ref|ZP_08124308.1| deaminase-reductase domain-containing protein [Pseudonocardia sp.
P1]
Length = 183
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA VA + LVD I++Y +++G+G G + V G L +
Sbjct: 119 GADVASQCLRRGLVDEILVYVLPVLLGDGVR--FSTPGLGRIDLEPVGNRQSGPVTLLRF 176
Query: 355 IGK 357
+
Sbjct: 177 RVR 179
>gi|298249661|ref|ZP_06973465.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297547665|gb|EFH81532.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 200
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
L V G + + ++ LVD + LY I +G G EG + F
Sbjct: 128 LQVSGSSHFLQTLLSHDLVDELYLYICPITLGIG--KRVFGEGTIPAAFSLRDVK 180
>gi|289704736|ref|ZP_06501159.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Micrococcus luteus SK58]
gi|289558546|gb|EFD51814.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Micrococcus luteus SK58]
Length = 168
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 20/71 (28%)
Query: 30 SVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALEE---------AGE--EARGAT 71
+ +V DG V+ HAEV AL AG+ T
Sbjct: 36 PIGAALVAGDGTVLAVVGNEREQHHDP--TAHAEVLALRRGAELRAAAGAGDGWRLTDCT 93
Query: 72 AYVTLEPCSHY 82
VTLEPC
Sbjct: 94 LVVTLEPCPMC 104
>gi|149911122|ref|ZP_01899748.1| hypothetical protein PE36_24023 [Moritella sp. PE36]
gi|149805799|gb|EDM65789.1| hypothetical protein PE36_24023 [Moritella sp. PE36]
Length = 181
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
++ + GGA +A S + LVD +IL I++G G
Sbjct: 108 NIWLLGGANLADSLLRLDLVDELILSTIPILLGNG 142
>gi|193077444|gb|ABO12257.2| putative dihydrofolate reductase [Acinetobacter baumannii ATCC
17978]
Length = 191
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
G + M S+ + I + N
Sbjct: 50 WGRATYQMMHDYWPSMLSNPEASEHERNHAE---WIEKTEKVVFSTTLDTVEWNNSRLVK 106
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+++ + +G +++ G AH + L+D + S ++IG G+P +
Sbjct: 107 DHVEEEINRLKQKQGKDMVIL-GSPRFAHYLMQLGLIDEYKITVSPVLIGS-GLPLF-QG 163
Query: 332 GYLEKNFMCVRRDYF 346
+ N + F
Sbjct: 164 IQEKTNLKLIENKTF 178
>gi|225387920|ref|ZP_03757684.1| hypothetical protein CLOSTASPAR_01690 [Clostridium asparagiforme
DSM 15981]
gi|225045989|gb|EEG56235.1| hypothetical protein CLOSTASPAR_01690 [Clostridium asparagiforme
DSM 15981]
Length = 161
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHA 55
M ++ D R + + SR + N L+ K+G ++ +T HA
Sbjct: 1 MDYTT-DIRNLKRCVEISRQSR--ANGNTPFGALLADKEGNILLEQPNVEITEKKCTGHA 57
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E QA E A E + T Y T EPC+
Sbjct: 58 ETQAAERASQLYSREFLKDCTLYTTAEPCAMC 89
>gi|187933684|ref|YP_001884701.1| deoxycytidylate deaminase [Clostridium botulinum B str. Eklund 17B]
gi|187721837|gb|ACD23058.1| dCMP deaminase [Clostridium botulinum B str. Eklund 17B]
Length = 164
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 29/126 (23%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M + + ++ A L +IVK+ +I G T
Sbjct: 1 MERTIKENYYLDIAETVLERGTCLRRNY---GSIIVKNDEIISTGYTGAPRGRKNCIDIN 57
Query: 54 ---------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQF 91
H+E A+ A GAT Y+
Sbjct: 58 SCIREKLQVPRGTHYELCRSVHSEANAIISASRRDMIGATLYLVGRDVKTREYVENANSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 SMCKRL 123
>gi|325957997|ref|YP_004289463.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Methanobacterium sp. AL-21]
gi|325329429|gb|ADZ08491.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Methanobacterium sp. AL-21]
Length = 208
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D ++ + Y + + + GV ++ V + + + LV+
Sbjct: 94 PQDYLNFLEENYINHMIVGYDEVNMATAFEELNIQFGVKTIAVHADGVLNSNLMIEDLVE 153
Query: 310 SIILYRSQIVIGEGGIPSPLEEG--YLEKNFMCVRRDYFGSDV-CLEYI 355
I ++ + G L+ + + + ++ L+Y
Sbjct: 154 EISIFMHPTLAGANNDDMFLQNNPENQKLDLRLLETKVVEDEIVYLKYR 202
>gi|109290173|ref|YP_656422.1| dCMP deaminase [Aeromonas phage 25]
gi|104345846|gb|ABF72746.1| dCMP deaminase [Aeromonas phage 25]
Length = 172
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 54/126 (42%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M +S + A ++ ++ V +I KDG +I G G P
Sbjct: 1 MKDTSV----LQHAYIVAQESHCVSWK---VGAIISKDGRIISTGY---NGTPAGCNHAN 50
Query: 54 ----------------------------------HAEVQALEEA---GEEARGATAYVTL 76
HAE+ A+ A G+ GA +VT+
Sbjct: 51 CDDHAKKSGWLDLTVRLRGMYRQAHSEWSKANEIHAELNAILYAAKTGQSIDGAEMHVTV 110
Query: 77 EPCSHY 82
PC
Sbjct: 111 SPCPDC 116
>gi|119718062|ref|YP_925027.1| bifunctional deaminase-reductase-like protein [Nocardioides sp.
JS614]
gi|119538723|gb|ABL83340.1| bifunctional deaminase-reductase-like protein [Nocardioides sp.
JS614]
Length = 185
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ + GG + F + L+D + + + + +G G +PL ++E R+
Sbjct: 108 KDVWLMGGGDLVGQFADVGLLDEVWVQYAPVTLGGG---APLLPRHVELRLEEHARNR 162
>gi|148508325|gb|ABQ76108.1| cytosine/adenosine deaminases [uncultured haloarchaeon]
Length = 153
Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62
M+ A+ +R ++V+D ++ R T H E+
Sbjct: 10 HEAHMTEAIELAREAADRGDD--PFGSVLVRDDTIVMRESNREHTESDIRRHPELHLAYR 67
Query: 63 AGEEARG-----ATAYVTLEPCSHY 82
A + Y + EPC
Sbjct: 68 ACQAYSPQERAMMAMYTSTEPCPMC 92
>gi|21227160|ref|NP_633082.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
mazei Go1]
gi|20905494|gb|AAM30754.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina
mazei Go1]
Length = 223
Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G ++ + G + + LVD I L + ++G+ G R +
Sbjct: 149 GFKLVVSDSGGILNSILLEQGLVDEISLVLTPEIVGKSGTNLFRGIEKSGIQLELSRNEI 208
Query: 346 FGS 348
Sbjct: 209 VEK 211
>gi|104783631|ref|YP_610129.1| hypothetical protein PSEEN4676 [Pseudomonas entomophila L48]
gi|95112618|emb|CAK17346.1| conserved hypothetical protein; RibD C-terminal domain [Pseudomonas
entomophila L48]
Length = 178
Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
+ LL L G SL ++GG + F+ LVD + + R +++G GIP
Sbjct: 93 HPGPIPALLEHLETTGAKSLYLDGG-KLIQGFLREGLVDELTITRIPVLLG-QGIPLF-G 149
Query: 331 EGYLEKNFMCVRRDYF 346
+ ++ +
Sbjct: 150 GLAKDVLLQHMKTTSY 165
>gi|329116214|ref|ZP_08244931.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus parauberis NCFD 2020]
gi|326906619|gb|EGE53533.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus parauberis NCFD 2020]
Length = 176
Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 2/134 (1%)
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + +I E +A ++ + + + + L
Sbjct: 45 FFASCDTIIMGRKAYDDCPLEMIDYHEMKQFYVATHQQRLSDRPNLHFTSSILENVKSLK 104
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GGA + I+ ++D I+ ++G+ G P + E +
Sbjct: 105 AEEGGPIWLFGGADLVQLMIDHDMIDQYIIGIIPTILGK-GRPLF-KGNDQEHKLKLIES 162
Query: 344 DYFGSDVCLEYIGK 357
L Y +
Sbjct: 163 TVTDGIAMLRYNRR 176
>gi|256271071|gb|EEU06172.1| Tad2p [Saccharomyces cerevisiae JAY291]
Length = 250
Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ G V+ G+ G HAE
Sbjct: 2 QHVKHMRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|261342053|ref|ZP_05969911.1| riboflavin biosynthesis protein RibD protein [Enterobacter
cancerogenus ATCC 35316]
gi|288315709|gb|EFC54647.1| riboflavin biosynthesis protein RibD protein [Enterobacter
cancerogenus ATCC 35316]
Length = 194
Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+ G + H+ + L+D L+ + I++G GIP + + V+ + F S
Sbjct: 125 ILMFGSPSATHALMAENLIDEYWLFVNPILLG-QGIPLF-KNIKDRTSLTLVKSEVFPSG 182
Query: 350 V-CLEYIGKN 358
V CL+Y K
Sbjct: 183 VMCLQYEVKR 192
>gi|206895932|ref|YP_002246819.1| tRNA-specific adenosine deaminase [Coprothermobacter
proteolyticus DSM 5265]
gi|206738549|gb|ACI17627.1| tRNA-specific adenosine deaminase [Coprothermobacter
proteolyticus DSM 5265]
Length = 154
Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 37/104 (35%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTST-----------------NPSVACLIVKDGIVIG 43
M + D ++M AL+ + N
Sbjct: 1 MTILGDDEKYMVEALKEAVKAYNEGEVPVGVVVVFNGVVVGRGYNLR------------- 47
Query: 44 RGVTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV AL +A GAT YVTLEPC
Sbjct: 48 EQSHDP--TAHAEVVALRDAAAHMGRWNLSGATVYVTLEPCLMC 89
>gi|190895157|ref|YP_001985450.1| putative dihydrofolate reductase [Rhizobium etli CIAT 652]
gi|190700818|gb|ACE94900.1| putative dihydrofolate reductase protein [Rhizobium etli CIAT 652]
Length = 188
Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+ G A V S N VD L +++G G EE + N V + F S
Sbjct: 122 ILIFGSATVVQSLTNLGAVDEFHLLVHPVLLGGGTR--LFEEVDVRMNLRRVDVEAFDSG 179
Query: 350 V-CLEYIG 356
+ + Y
Sbjct: 180 IVKMVYQR 187
>gi|302526018|ref|ZP_07278360.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302434913|gb|EFL06729.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 191
Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G A + + ++ LVD + L +++G G E ++ + + + +
Sbjct: 123 IIVNGSATLVRNLADAGLVDRLHLLVFPVLLGA-GKRLFSETDKDKQPLKLIESESYSNG 181
Query: 350 V---CLEYIG 356
+ E++
Sbjct: 182 IQKQIFEFVR 191
>gi|86609997|ref|YP_478759.1| riboflavin biosynthesis protein RibD domain-containing protein
[Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558539|gb|ABD03496.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 224
Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 9/219 (4%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R H+ A S D I + + AQ A+++G T+ A L
Sbjct: 4 NRPHLVAIFAQSLDGKIAAHRAQRPSFSSPEDYRHLETQAAQQQALIMGAATLRAYGTSL 63
Query: 208 TCRLNGLQEHSPMRIILDPHF-----KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
R L + + + + + + R
Sbjct: 64 RIRDPELIQRRTAQGLSPQPLTIICSDSGDIPEDLPFFRQPLTRWLWTTPKGSQIWQNRT 123
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-G 321
+I DL L L G+ + + GG + +F+ + +D + + + +++ G
Sbjct: 124 GFEDIWVAADWDLPARLARLRSLGIERVGLLGGGRLLGAFLQAGALDELWVTLAPVLLSG 183
Query: 322 EGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGK 357
P+ +E ++ + ++ L Y +
Sbjct: 184 YADAPASIEGWQVQGSLPQLELLECRRGSKELFLRYRVE 222
>gi|290771180|emb|CAY80744.2| Tad2p [Saccharomyces cerevisiae EC1118]
Length = 250
Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQA 59
+ M A+R +R+ + T VAC+ G V+ G+ G HAE
Sbjct: 2 QHVKHMRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMG 59
Query: 60 LEEAGEEA---------RGATAYVTLEPCSHY 82
+++ + T YVT+EPC
Sbjct: 60 IDQIKAMLGSRGVVDVFKDITLYVTVEPCIMC 91
>gi|297201103|ref|ZP_06918500.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|197712109|gb|EDY56143.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 191
Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G A+ + + + LVD + + ++ G G+ P+ G + + + ++ L
Sbjct: 126 GSLAMNRALMAAGLVDRVQVTVFPVITGRTGLD-PVFRGAEDFDLELLESRTLDRNIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 VYRP 188
>gi|311281726|ref|YP_003943957.1| bifunctional deaminase-reductase domain-containing protein
[Enterobacter cloacae SCF1]
gi|308750921|gb|ADO50673.1| bifunctional deaminase-reductase domain protein [Enterobacter
cloacae SCF1]
Length = 186
Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ + + ++GG V SF+ L+ +++ ++IG G + + +
Sbjct: 105 AEQNIQRVYLDGG-QVVQSFLREGLITDMVITTVPVLIGSG--KPLFGTLSRDIDLTLLS 161
Query: 343 RDYF 346
F
Sbjct: 162 SRSF 165
>gi|240169438|ref|ZP_04748097.1| hypothetical protein MkanA1_09004 [Mycobacterium kansasii ATCC
12478]
Length = 193
Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G+ G P+ +G + + + ++ L
Sbjct: 127 GSLSMNRALMAAGLVDRVQVTLFPVITGQTG-DDPIYQGAADFDLELIESRTLDGNIQEL 185
Query: 353 EYIG 356
Y
Sbjct: 186 IYRP 189
>gi|311747976|ref|ZP_07721761.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
gi|126574952|gb|EAZ79310.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1]
Length = 177
Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + + GG A +++ L+D + L + I++G GI + ++ + F
Sbjct: 108 TDIYLCGGGEFAGWLLDNGLIDQLKLKLNPIILG-EGIKLF-GNSSQKAKWILKETESFK 165
Query: 348 SDV-CLEY-IGK 357
+ L Y I K
Sbjct: 166 DGLTILTYDIRK 177
>gi|72381983|ref|YP_291338.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. NATL2A]
gi|72001833|gb|AAZ57635.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. NATL2A]
Length = 155
Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG- 64
M+ L +R VG P +A +I+ K G IG G HAE+ AL +A
Sbjct: 1 MTRLLTKARL-VGERGEVP-IAAVILDKKGRCIGYGGNRRESMKDPLGHAELVALRQASW 58
Query: 65 ----EEARGATAYVTLEPCSHY 82
T V LEPC
Sbjct: 59 IKNDWRFNDCTLIVNLEPCPMC 80
>gi|299133777|ref|ZP_07026971.1| bifunctional deaminase-reductase domain protein [Afipia sp. 1NLS2]
gi|298591613|gb|EFI51814.1| bifunctional deaminase-reductase domain protein [Afipia sp. 1NLS2]
Length = 219
Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 26/111 (23%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
K V A K +
Sbjct: 77 WIMGRNMFGPVRGAWPDETWKGWWGDEPPYHCPVFVLTHHARAPITMKGGTVFHFVTDGI 136
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L G + V GG ++ +RL+D + + S +++G G
Sbjct: 137 EVALDRARQAAGGKDIRVGGGVTTIREYLRARLIDDLHIAISPVLLGRGEA 187
>gi|322411688|gb|EFY02596.1| hypothetical protein SDD27957_04735 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 177
Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA + HS I + L+D I+ ++G G P E++ +
Sbjct: 111 IWIFGGADLVHSLIGADLIDHYIIGIIPNILG-CGRPLF-TGNRQERHLRLIESTVTDGI 168
Query: 350 VCLEY 354
L Y
Sbjct: 169 AMLRY 173
>gi|239504206|ref|ZP_04663516.1| dihydrofolate reductase [Acinetobacter baumannii AB900]
Length = 191
Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 11/133 (8%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTI 281
++ + T L +P E + + + + + +L+
Sbjct: 48 VIWGRATYQMMHNYWPTMLSSPEASEHERNHAEWIEKTEKIVFSTTLDTVEWNNSRLVKD 107
Query: 282 LVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
V + L ++ G AH + L+D + S ++IG G+P +
Sbjct: 108 HVEEEINKLKQQPGKDMVILGSPRFAHYLMQLGLIDEYKITVSPVLIGS-GLPLF-QGIQ 165
Query: 334 LEKNFMCVRRDYF 346
+ N + F
Sbjct: 166 QKTNLKLIENKTF 178
>gi|157952575|ref|YP_001497467.1| hypothetical protein NY2A_B271R [Paramecium bursaria Chlorella
virus NY2A]
gi|155122802|gb|ABT14670.1| hypothetical protein NY2A_B271R [Paramecium bursaria Chlorella
virus NY2A]
Length = 145
Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 14/124 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP---HAEV 57
++ D + +A+ + G C+I+ +I G T HAE+
Sbjct: 26 MTRLDEA-IESAIEQANRSSGPFKH----GCVIMSGKKIIATGNNHTRRDIGTFSIHAEM 80
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AL + Y ++ + C + + + V
Sbjct: 81 DAL----WRISDSDLYDNMKAVIIRVTNTGKLANSRPCEMCMAALKQHNIRTIVYSTTCA 136
Query: 118 WLSQ 121
L
Sbjct: 137 RLKM 140
>gi|126461710|ref|YP_001042824.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
17029]
gi|126103374|gb|ABN76052.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
17029]
Length = 150
Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 40 IVIGRGVTA----YGGCPHAEVQALEEA----GEEARGATAYVTLEPCSHY 82
V+ R HAE+ A+ A GE G YVTLEPC
Sbjct: 35 QVVARAGNRCRELSDPTAHAEMLAIRAACATLGERLTGCDLYVTLEPCPMC 85
>gi|228967393|ref|ZP_04128426.1| ComE operon protein 2 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228792281|gb|EEM39850.1| ComE operon protein 2 [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 87
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPH 54
M S+D FM+ + S T T +V IV+D +I G + G H
Sbjct: 4 MERISWDQYFMTQSHLLSLRS---TCTRLAVGATIVRDKRIIAGGYNGSIKGGVH 55
>gi|66391526|ref|YP_239051.1| Cd dCMP deaminase [Enterobacteria phage RB43]
gi|62288614|gb|AAX78597.1| Cd dCMP deaminase [Enterobacteria phage RB43]
Length = 174
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 44/165 (26%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------------------- 47
M A+ + G + V +IV +G V+ +G
Sbjct: 5 HMIRAI---KQSQGSRCISNRVGAVIVMNGRVVSQGTNNTVDSDCRCADHNNHMLNDEGK 61
Query: 48 ------------AYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFI 92
+ HAE++AL A G A Y T PC + +
Sbjct: 62 LKAIHRPEHSAWSNDNEIHAEMKALLSAHTNGIMLNNAELYTTASPCPNCAKHIE----W 117
Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137
V D R + + L + G V+++ + +
Sbjct: 118 YVAIGAITSVYFLDKYDRGNDEWISRLQKYGCKVEQIKREKLEPH 162
>gi|310722262|ref|YP_003969086.1| dCMP deaminase [Aeromonas phage phiAS4]
gi|306021105|gb|ADM79640.1| dCMP deaminase [Aeromonas phage phiAS4]
Length = 172
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 54/126 (42%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M +S + A ++ ++ V +I KDG +I G G P
Sbjct: 1 MKDTSV----LQHAYIVAQESHCVSWK---VGAIISKDGRIISTGY---NGTPAGCNHAN 50
Query: 54 ----------------------------------HAEVQALEEA---GEEARGATAYVTL 76
HAE+ A+ A G+ GA +VT+
Sbjct: 51 CDDHAKKSGWLDSYGKLRGMYRQAHSEWSKANEIHAELNAILYAAKTGQSIDGAEMHVTV 110
Query: 77 EPCSHY 82
PC
Sbjct: 111 SPCPDC 116
>gi|239942547|ref|ZP_04694484.1| hypothetical protein SrosN15_16261 [Streptomyces roseosporus NRRL
15998]
gi|239989010|ref|ZP_04709674.1| hypothetical protein SrosN1_17010 [Streptomyces roseosporus NRRL
11379]
gi|291446007|ref|ZP_06585397.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
gi|291348954|gb|EFE75858.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
Length = 214
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P + + + D L
Sbjct: 83 PQRGPWENHEWQGWWGDEPPFHTPVFVMTHHTRPSLALSDTTFHFVDADPATVLDRAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + + GG F+++ LVD++ + + + +G G
Sbjct: 143 AGGKDVRLGGGVTTIREFLDAGLVDTLHVAVAPVKLGTG 181
>gi|251795232|ref|YP_003009963.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
gi|247542858|gb|ACS99876.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
Length = 159
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPHAEV 57
+ A ++ + SR N ++V + G ++ +T HAE
Sbjct: 1 MKQDHAYYLKYCIEVSRRSREN--GNTPFGAILVNEQGEIVLEQENVELTEKRCTGHAET 58
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYG 83
+E+A + T Y T EPC+
Sbjct: 59 ALMEKASHQFEHHDLWNYTLYTTFEPCAMCS 89
>gi|88855473|ref|ZP_01130137.1| putative dihydrofolate reductase [marine actinobacterium PHSC20C1]
gi|88815380|gb|EAR25238.1| putative dihydrofolate reductase [marine actinobacterium PHSC20C1]
Length = 184
Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLE 335
L I G + V GG +A F++ +D I + + V+G G P
Sbjct: 102 ALPAIREAAGDGDIWVVGGGDLAAQFMDEGALDEISVSIAPATVLG--GAPLFPRALG-A 158
Query: 336 KNFMCVRRDYFGS 348
G
Sbjct: 159 DRLRLKSATAVGQ 171
>gi|238013064|gb|ACR37567.1| unknown [Zea mays]
Length = 138
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGR 44
S+D FM+ A + N V +V ++GI++G
Sbjct: 69 SWDDYFMAIAFLSAERSK---DPNRQVGACLVSQEGIILGE 106
>gi|71026495|ref|XP_762917.1| cytidine deaminase [Theileria parva strain Muguga]
gi|68349869|gb|EAN30634.1| cytidine deaminase, putative [Theileria parva]
Length = 153
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 25/98 (25%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALE 61
FM AL ++ + +VAC+IV V+ A Y H E++A+
Sbjct: 10 ENFMKLALEEAKKALDK--EEVAVACIIVSKATREVVASSSNATNLTYNSTWHCELEAIN 67
Query: 62 -----------------EAGEEARGATAYVTLEPCSHY 82
+ E G +VT EPC
Sbjct: 68 KLIDMEPNGYKSQQDSGKLREFCSGFVLFVTCEPCIMC 105
>gi|284991614|ref|YP_003410168.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284064859|gb|ADB75797.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 183
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
L V G A + + + LVD + LY + +G G P +
Sbjct: 114 DLYVSGSATLVRALLADGLVDELHLYVYPVAVGTGIRLFPDGAPRTPLSL 163
>gi|118471960|ref|YP_889465.1| riboflavin biosynthesis protein RibD domain-containing protein
[Mycobacterium smegmatis str. MC2 155]
gi|118173247|gb|ABK74143.1| riboflavin biosynthesis protein RibD C- domain protein
[Mycobacterium smegmatis str. MC2 155]
Length = 185
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G A I + +VD + V+G G P + + F V L
Sbjct: 125 GPTTAAPAIRAGMVDEFNFFVVPKVVGGGLRALP---DDVRLDLGLAEHTIFDDGVVYLR 181
Query: 354 YIG 356
Y
Sbjct: 182 YAP 184
>gi|77462818|ref|YP_352322.1| hypothetical protein RSP_2267 [Rhodobacter sphaeroides 2.4.1]
gi|77387236|gb|ABA78421.1| cytidine and deoxycytidylate deaminase family protein
[Rhodobacter sphaeroides 2.4.1]
Length = 150
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 40 IVIGRGVTA----YGGCPHAEVQALEEA----GEEARGATAYVTLEPCSHY 82
V+ R HAE+ A+ A GE G YVTLEPC
Sbjct: 35 QVVARAGNRCRELSDPTAHAEMLAIRAACATLGERLTGCDLYVTLEPCPMC 85
>gi|189467334|ref|ZP_03016119.1| hypothetical protein BACINT_03722 [Bacteroides intestinalis DSM
17393]
gi|189435598|gb|EDV04583.1| hypothetical protein BACINT_03722 [Bacteroides intestinalis DSM
17393]
Length = 67
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG + S I + L+DS+ +Y +++G+G + G VC
Sbjct: 3 GGGKLLTSLIKAGLLDSLTVYTVPVMLGKG---IGFLGETFGSEWKLSESKVLDGGVVCS 59
Query: 353 EYIGKN 358
Y
Sbjct: 60 TYQFDK 65
>gi|84497829|ref|ZP_00996626.1| hypothetical protein JNB_17118 [Janibacter sp. HTCC2649]
gi|84381329|gb|EAP97212.1| hypothetical protein JNB_17118 [Janibacter sp. HTCC2649]
Length = 171
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G L + GG + F + L+D + + + + +G G +P+ ++E N V R+
Sbjct: 104 GDKDLWIVGGGDLVGQFHDVGLLDEVWVQYAPVTLGGG---APVLPRHVELNLEEVARNR 160
>gi|212709875|ref|ZP_03318003.1| hypothetical protein PROVALCAL_00924 [Providencia alcalifaciens DSM
30120]
gi|212687686|gb|EEB47214.1| hypothetical protein PROVALCAL_00924 [Providencia alcalifaciens DSM
30120]
Length = 180
Score = 43.4 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K+++ L G ++GG V SFI+ L++ +I+ R I++G G P E
Sbjct: 99 PKEIMNKLESEGHHRAYIDGG-KVIQSFISDGLINDLIITRIPILLGS-GRPLF-GEIPN 155
Query: 335 EKNFMCVRRDYF 346
+ + ++ F
Sbjct: 156 DIHLRHIQTTTF 167
>gi|311279862|ref|YP_003942093.1| bifunctional deaminase-reductase domain-containing protein
[Enterobacter cloacae SCF1]
gi|308749057|gb|ADO48809.1| bifunctional deaminase-reductase domain protein [Enterobacter
cloacae SCF1]
Length = 194
Score = 43.4 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GS 348
+L+ G + H+ + L+D L+ + I++G GIP + + M V+ F
Sbjct: 125 ILIFGSPSATHALMAENLIDEYWLFVNPILLG-QGIPLF-KNIKDRTSLMLVKSKVFPSG 182
Query: 349 DVCLEYIGKN 358
VCL+Y K
Sbjct: 183 VVCLQYEVKR 192
>gi|56752284|ref|YP_172985.1| hypothetical protein syc2275_c [Synechococcus elongatus PCC 6301]
gi|81300628|ref|YP_400836.1| hypothetical protein Synpcc7942_1819 [Synechococcus elongatus PCC
7942]
gi|24251265|gb|AAN46185.1| unknown protein [Synechococcus elongatus PCC 7942]
gi|56687243|dbj|BAD80465.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169509|gb|ABB57849.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 194
Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ GG + + + +D +IL I++G GIP + E+ + V+ +
Sbjct: 121 WLVGGGQLVQQCLAADCLDELILSIHPILLG-NGIPLF-PSPFPEQRWQLVKTQSY 174
>gi|148554116|ref|YP_001261698.1| deaminase-reductase domain-containing protein [Sphingomonas
wittichii RW1]
gi|148499306|gb|ABQ67560.1| bifunctional deaminase-reductase domain protein [Sphingomonas
wittichii RW1]
Length = 186
Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ + GG + +F+ +D I +Y +IG G P
Sbjct: 108 DVWMLGGGQLQMAFLERGALDEIEIYVIPEMIGGGRPLFPATGFQSSPRL 157
>gi|298247330|ref|ZP_06971135.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297549989|gb|EFH83855.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 183
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 7/112 (6%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
I V + P + ++ + + G + V GGA A + +
Sbjct: 72 IFVLTHTVPEKKVKGENDHLRVTFVTDGIESAFQQAKAAAGEKQVTVVGGADTAQQCLRA 131
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS----DVCLE 353
LVD I + ++ GEG + + + F S D+
Sbjct: 132 GLVDEIHMGVVPVLFGEGLR---FFAPLVNEQLQLEKIRVFESPTRTDLWFR 180
>gi|126641875|ref|YP_001084859.1| putative dihydrofolate reductase [Acinetobacter baumannii ATCC
17978]
Length = 169
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
G + M S+ + I + N
Sbjct: 28 WGRATYQMMHDYWPSMLSNPEASEHERNHAE---WIEKTEKVVFSTTLDTVEWNNSRLVK 84
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+++ + +G +++ G AH + L+D + S ++IG G+P +
Sbjct: 85 DHVEEEINRLKQKQGKDMVIL-GSPRFAHYLMQLGLIDEYKITVSPVLIGS-GLPLF-QG 141
Query: 332 GYLEKNFMCVRRDYF 346
+ N + F
Sbjct: 142 IQEKTNLKLIENKTF 156
>gi|34498750|ref|NP_902965.1| hypothetical protein CV_3295 [Chromobacterium violaceum ATCC 12472]
gi|34104601|gb|AAQ60959.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 219
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 26/111 (23%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
+ K + V + +
Sbjct: 74 WILGRNMFGPVRGPWPDREWKGWWGEEPPYRVPVFVLTHHARPALAMQGGTVFHFVTDGI 133
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L G + + GG ++ + LVD + L + +++G G
Sbjct: 134 QAALQRARQAAGGRDVRLGGGVDTVRQYLRAGLVDELHLAIAPVLLGAGEA 184
>gi|110639292|ref|YP_679501.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
gi|110281973|gb|ABG60159.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
Length = 181
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 3/114 (2%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
+ + + D+ + + +G + + GGA++ +FI
Sbjct: 70 LWQAIHAKKKFLFSKTVMQDKQATIIASDIAAYVAEIKKQGGKDIWLYGGASLIKTFIQL 129
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
L+D + I +G G E N ++ + F S V L Y +
Sbjct: 130 DLIDVYRISVHPIALGSG--KPLFETLQHRLNLKLIKTNIFRSGVVQLIYEPEK 181
>gi|255591326|ref|XP_002535488.1| conserved hypothetical protein [Ricinus communis]
gi|223522928|gb|EEF26895.1| conserved hypothetical protein [Ricinus communis]
Length = 215
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 27/111 (24%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
+ K + V K +
Sbjct: 74 WILGRNMFGPVRGPWPDDEWKGWWGDEPPYHVPVFVLTHHARPPLEMKGGTTFYFVTDGI 133
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
L G + + GG + ++ + LVD + L S +++G G
Sbjct: 134 EAALARAKEAAGGKDVRLGGGVSTIRQYLQAGLVDEMHLAISPVLLGRGEA 184
>gi|168178955|ref|ZP_02613619.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum NCTC 2916]
gi|226950812|ref|YP_002805903.1| riboflavin biosynthesis protein RibD C- domain-containing protein
[Clostridium botulinum A2 str. Kyoto]
gi|182670101|gb|EDT82077.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum NCTC 2916]
gi|226840870|gb|ACO83536.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum A2 str. Kyoto]
Length = 173
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
I+ C D+ + G + + GG A+ F+ + ++D I+ ++G+ G P
Sbjct: 86 NIHFICGDIVSIFEKEKNSGKN-IFLFGGGALIDHFVKANVIDEYIVGIIPTILGK-GRP 143
Query: 327 SPLEEG 332
L
Sbjct: 144 LFLGNN 149
>gi|294791140|ref|ZP_06756297.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
gi|294457611|gb|EFG25965.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
Length = 152
Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE 65
M AL +R V +++ +G V+ HAE++ + EA
Sbjct: 9 MGVALENARKSADFDEI--PVGAVVLNSEGAVLAAERNHREEKADPFSHAEIEVMREAAR 66
Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQF 91
T VT+EPC + A
Sbjct: 67 VRESWNFEDCTLVVTMEPCPMCAGAIVSAHM 97
>gi|332557706|ref|ZP_08412028.1| hypothetical protein RSWS8N_01605 [Rhodobacter sphaeroides WS8N]
gi|332275418|gb|EGJ20733.1| hypothetical protein RSWS8N_01605 [Rhodobacter sphaeroides WS8N]
Length = 150
Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 40 IVIGRGVTA----YGGCPHAEVQALEEA----GEEARGATAYVTLEPCSHY 82
V+ R HAE+ A+ A GE G YVTLEPC
Sbjct: 35 QVVARAGNRCRELSDPTAHAEMLAIRAACATLGERLTGCDLYVTLEPCPMC 85
>gi|255641124|gb|ACU20840.1| unknown [Glycine max]
Length = 168
Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 30/97 (30%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTAYG 50
D +F++ A+ + V +++++
Sbjct: 36 DRDHKFLTKAVEEAYKGV-ECGDGGPFGAVVVLNDEVVVSCHNMVLRN----------TD 84
Query: 51 GCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAEV A+ EA ++ Y + EPC
Sbjct: 85 PTAHAEVTAIREACQKLNQIELADCEIYASCEPCPMC 121
>gi|228959407|ref|ZP_04121097.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228800241|gb|EEM47168.1| Bifunctional deaminase-reductase-like protein [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 166
Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
++ + ++ + + +LL+ G + + + L+D + +++G G
Sbjct: 73 WNANLIKGNIVEEISKMKEQPGQNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG-- 130
Query: 326 PSPLEEGYLEKNFMCVRRDY 345
+ G K +
Sbjct: 131 KHLFKTGNDTKALKLIETRT 150
>gi|218514772|ref|ZP_03511612.1| putative dihydrofolate reductase protein [Rhizobium etli 8C-3]
Length = 132
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+ G A V S N VD L +++G G EE + N V + F S
Sbjct: 66 ILIFGSATVVQSLTNLGAVDEFHLLVHPVLLGGGTR--LFEEVDVRMNLRRVDVEAFDSG 123
Query: 350 V-CLEYIG 356
+ + Y
Sbjct: 124 IVKMVYQR 131
>gi|126734330|ref|ZP_01750077.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
CCS2]
gi|126717196|gb|EBA14060.1| bifunctional deaminase-reductase-like protein [Roseobacter sp.
CCS2]
Length = 175
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG A S + ++D I+L R+ IV+G G S + + V + +
Sbjct: 110 IYLCGGGDFAGSLLMKGMIDRIVLKRAPIVLGGG--VSLFGQRQTKAPIRRVSTKTYDN 166
>gi|323494127|ref|ZP_08099243.1| deaminase-reductase domain-containing protein [Vibrio brasiliensis
LMG 20546]
gi|323311754|gb|EGA64902.1| deaminase-reductase domain-containing protein [Vibrio brasiliensis
LMG 20546]
Length = 177
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++++ L +G L ++GG + +F+ L+D + + +++G G + +
Sbjct: 98 QVVSDLNQQGYHDLYIDGGITI-QNFLEQELIDQLTITTIPVLLGGGVK--LFGDLESMQ 154
Query: 337 NFMCVRRDYFGSDVC-LEYIG 356
N+ V + + Y
Sbjct: 155 NYKLVESTVYLDTIVQSHYAR 175
>gi|302548179|ref|ZP_07300521.1| riboflavin biosynthesis, RibD domain-containing protein
[Streptomyces hygroscopicus ATCC 53653]
gi|302465797|gb|EFL28890.1| riboflavin biosynthesis, RibD domain-containing protein
[Streptomyces himastatinicus ATCC 53653]
Length = 212
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-DYFGSDV 350
V G +A + I LVD L ++IG G +G + V G +
Sbjct: 140 VVGSGDLAQTLIRHGLVDEYRLTIHPVIIGTG--KRLFADGAIPTALEPVSVSTTKGGTI 197
Query: 351 CLEYIGK 357
Y
Sbjct: 198 VGVYRPN 204
>gi|297154979|gb|ADI04691.1| hypothetical protein SBI_01570 [Streptomyces bingchenggensis BCW-1]
Length = 214
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 26/99 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +F + + D L
Sbjct: 83 PQRGPWHDHEWRGWWGEEPPFRTPVFVMTHHKRPSFTLSDTTFHFVDGAPATVLEQAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG F+++ LVD++ + S + +G G
Sbjct: 143 AQGKDVRLGGGVTTIRQFLDADLVDTLHVVVSPVRLGSG 181
>gi|296114354|ref|ZP_06833008.1| CMP/dCMP deaminase [Gluconacetobacter hansenii ATCC 23769]
gi|295979115|gb|EFG85839.1| CMP/dCMP deaminase [Gluconacetobacter hansenii ATCC 23769]
Length = 173
Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 19/98 (19%)
Query: 38 DGIVIG------RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSP 86
DG ++ HAE+ AL EA G+ YVTLEPC P
Sbjct: 55 DGAILSCAGNRSEEWHDP--SAHAEMLALREATRIRGGQRLSDCALYVTLEPC------P 106
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
CA + I R++ DP G + ++ G
Sbjct: 107 MCAGAAVHFRIGRILFGAYDPKGGGVDHGPRLFARPGC 144
>gi|167538365|ref|XP_001750847.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770668|gb|EDQ84351.1| predicted protein [Monosiga brevicollis MX1]
Length = 203
Score = 43.4 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 5 SFDARFMSAALRFSRWH-VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQ 58
D M+ A+ SR + + T ++ D +I GV HAE
Sbjct: 42 PDDESKMALAIDLSRRNVLHKTGG--PFGAVVFGPDHRIIAVGVNRVVPQVSSLAHAENM 99
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
A A + + P + + PC Q
Sbjct: 100 AYMLAQQHLQTYRLNEKNAPVTLVSSAQPCCQC 132
>gi|327278242|ref|XP_003223871.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like
[Anolis carolinensis]
Length = 353
Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 28/92 (30%)
Query: 8 ARFMSAALRFSRWH--VGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCP---HAEVQAL 60
M A++ ++ G+ V ++V G V+ G G H
Sbjct: 211 QYHMELAIQAAQQGAKQGMR----PVGAVVVDPSSGKVLAVGHDCRDGLNPIDH------ 260
Query: 61 EEAGEE----------ARGATAYVTLEPCSHY 82
++G G Y+T EPC+
Sbjct: 261 -QSGHSSPSTNGLPYICTGYDMYLTREPCAMC 291
>gi|110638786|ref|YP_678995.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
gi|110281467|gb|ABG59653.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
Length = 116
Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ +G +LV G A H+ I L+D L+ + +++G+ GIP
Sbjct: 40 EIKQQGDKEILVFGSPAATHTLIQKGLIDGYWLFVNPVILGK-GIPLF-TNIKDNVKLTL 97
Query: 341 VRRDYF 346
V F
Sbjct: 98 VSTQPF 103
>gi|333024644|ref|ZP_08452708.1| hypothetical protein STTU_2147 [Streptomyces sp. Tu6071]
gi|332744496|gb|EGJ74937.1| hypothetical protein STTU_2147 [Streptomyces sp. Tu6071]
Length = 204
Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+++ GGAA+ S + LVD + L+ S +++G G +PL G ++ +
Sbjct: 139 DVVLMGGAALIRSAFAAGLVDVLSLHLSPVLLGAG---TPLFTGGTARSLVQRDVR 191
>gi|302521718|ref|ZP_07274060.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
gi|318058385|ref|ZP_07977108.1| hypothetical protein SSA3_10605 [Streptomyces sp. SA3_actG]
gi|318077364|ref|ZP_07984696.1| hypothetical protein SSA3_11740 [Streptomyces sp. SA3_actF]
gi|302430613|gb|EFL02429.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
Length = 204
Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+++ GGAA+ S + LVD + L+ S +++G G +PL G ++ +
Sbjct: 139 DVVLMGGAALIRSAFAAGLVDVLSLHLSPVLLGAG---TPLFTGGTARSLVQRDVR 191
>gi|32453705|ref|NP_861914.1| deoxycytidylate deaminase [Enterobacteria phage RB69]
gi|32350524|gb|AAP76123.1| Cd dCMP deaminase [Enterobacteria phage RB69]
Length = 169
Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQA 59
M S+ ++ A S+ + V +I KDG +I G + G V
Sbjct: 1 MKAST----YLQIAYLISQESKCCSWK---VGAVIEKDGRIISTGYNGSPAGG----VNC 49
Query: 60 LEEAGEE 66
E A E
Sbjct: 50 CEHASEN 56
>gi|254822502|ref|ZP_05227503.1| bifunctional deaminase-reductase domain protein [Mycobacterium
intracellulare ATCC 13950]
Length = 192
Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V G + + H+ + LVD + + V+G G +K+ V G
Sbjct: 122 RIVVYGSSRLVHTLVEHDLVDELRMMVFPFVLGAGDR--LFGATSGKKDMRLVATRRVGD 179
Query: 349 DV-CLEYIG 356
+ L Y
Sbjct: 180 GLAILVYRP 188
>gi|225019182|ref|ZP_03708374.1| hypothetical protein CLOSTMETH_03134 [Clostridium methylpentosum
DSM 5476]
gi|224948034|gb|EEG29243.1| hypothetical protein CLOSTMETH_03134 [Clostridium methylpentosum
DSM 5476]
Length = 155
Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIV---------------------- 41
+ D +M+ A +++ H V ++V DG V
Sbjct: 8 NMDQEYMAQAYQYAEEH--SRCLRRKVGAVLVSCDGEVLRSTNLPVPDPQQCIQEDCLRD 65
Query: 42 ---IGRGVTAY-GGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82
I G + C HAE+ L + G + AT Y TL PC +
Sbjct: 66 LNGIASGQHSDLCRCIHAEIDLLIQCARKGISSDRATVYCTLSPCPNC 113
>gi|119394655|gb|ABL74489.1| putative cytidine deaminase [Zea mays]
gi|119394657|gb|ABL74490.1| putative cytidine deaminase [Zea mays]
Length = 186
Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DKDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMC 114
>gi|111020551|ref|YP_703523.1| hypothetical protein RHA1_ro03562 [Rhodococcus jostii RHA1]
gi|110820081|gb|ABG95365.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 187
Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 44/172 (25%), Gaps = 11/172 (6%)
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
G + + + + + + S TA P E
Sbjct: 15 YIAASGDDLGWSVPSDELFQWWSDRVGATGTALYGRKL-WETMSSHWPTADQQPGATPAE 73
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFI 303
+ K + +L+T +T L E GGA +A +
Sbjct: 74 IEFARRWRDMPKVVFSSTTSTVDWNTRLVTGDAVTEITRLKAEDGGPMDIGGATLAAVAV 133
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
L+D + +++G G P N V F V Y
Sbjct: 134 REGLIDEYAIVTHPVLVGG-GTPFFAALDNW-VNLTLVETGTFPDGVVLTRY 183
>gi|239916882|ref|YP_002956440.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
gi|281414664|ref|ZP_06246406.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
gi|239838089|gb|ACS29886.1| tRNA-adenosine deaminase [Micrococcus luteus NCTC 2665]
Length = 168
Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 20/71 (28%)
Query: 30 SVACLIVK-DGIVIG------RGVTAYGGCPHAEVQALEE-----------AGEEARGAT 71
+ +V DG V+ HAEV AL G T
Sbjct: 36 PIGAALVAGDGTVLAVVGNEREQHHDP--TAHAEVLALRRGAELRAAAGAHDGWRLTDCT 93
Query: 72 AYVTLEPCSHY 82
VTLEPC
Sbjct: 94 LVVTLEPCPMC 104
>gi|284992265|ref|YP_003410819.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065510|gb|ADB76448.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 182
Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V GG + + + LVD + + +++G G
Sbjct: 114 GERDVTVVGGVDLNRQLLAAGLVDELHVDVMPVLLGSG 151
>gi|239618396|ref|YP_002941718.1| FolA [Kosmotoga olearia TBF 19.5.1]
gi|239507227|gb|ACR80714.1| FolA [Kosmotoga olearia TBF 19.5.1]
Length = 179
Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L++ + G +++ GG + F+ ++LV I L I++ +EE +
Sbjct: 89 LISKIGRLGFKHIVIGGGREIYTLFLKNKLVTDIYLSIEPIILKGKVTMLNVEELNNDIR 148
Query: 338 FMCVRRDYFGSDVC-LEYIGKNLCLQEL 364
+ + Y ++EL
Sbjct: 149 LELEELLKLSKNTLVVHYTIPENRVREL 176
>gi|167772759|ref|ZP_02444812.1| hypothetical protein ANACOL_04141 [Anaerotruncus colihominis DSM
17241]
gi|167665237|gb|EDS09367.1| hypothetical protein ANACOL_04141 [Anaerotruncus colihominis DSM
17241]
Length = 198
Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ L + ++++ I L L L ++
Sbjct: 75 WTTYHQIITELVWESWPYPGLPCYVVTHRQEQDRESICFWNGKLTVLADKLKTEREGNIW 134
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GA+VA + +D + L V+G+G E E VR ++ V
Sbjct: 135 ICVGASVAGQLLKEGRIDKLWLSVIPTVLGKGVR--LFAEQGQELLLKLVRAQHYNGIVD 192
Query: 352 LEYIGK 357
L Y +
Sbjct: 193 LVYEKR 198
>gi|167619028|ref|ZP_02387659.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
Bt4]
Length = 65
Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats.
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 308 VDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352
VD +++Y + ++G + G D+ +
Sbjct: 1 VDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRI 49
>gi|108800567|ref|YP_640764.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
gi|119869706|ref|YP_939658.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. KMS]
gi|126436183|ref|YP_001071874.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. JLS]
gi|108770986|gb|ABG09708.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
gi|119695795|gb|ABL92868.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. KMS]
gi|126235983|gb|ABN99383.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. JLS]
Length = 154
Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 19/148 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG 64
+ A +R + + + G ++G G HAE A AG
Sbjct: 14 MLDVAYAEARKGLSEGGI--PIGAALFSAGGTLLGSGHNRRVQDDDPSVHAETDAFRNAG 71
Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ R TL PC + + V + R G +WL++
Sbjct: 72 RQRDYRSTVMVTTLSPCWYCSGLVRQFN----------IGAVIVGESRTFTGGHEWLAEH 121
Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRS 150
G+ V + + + ++ + + +
Sbjct: 122 GVEVTVLDDDRCVSMMTEFIDAEPDLWN 149
>gi|271964751|ref|YP_003338947.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270507926|gb|ACZ86204.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 180
Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA VA + LVD I++Y +++G+G SP G ++ G+ L +
Sbjct: 119 GADVAAQCLQRGLVDEILVYVLPLLLGDGVRFSPPGLGRID--LEPFSNTQSGAVTMLRF 176
Query: 355 IGKN 358
+
Sbjct: 177 RVRK 180
>gi|220919134|ref|YP_002494438.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956988|gb|ACL67372.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 219
Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 26/109 (23%)
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
K + V + +
Sbjct: 79 WILGRNMFAPSRGPWPDDGWKGWWGENPVYHVPVFVLTHHARPPLEMQGGTTFHFVTEGI 138
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L G + + GG A ++ + LVD + L S +++G G
Sbjct: 139 HAALDRAKEAAGGKDVRLGGGVATVREYLAAGLVDEVHLAISPVLLGRG 187
>gi|237880781|gb|ACR33039.1| cytosine/adenine deaminase [Actinoplanes garbadinensis]
Length = 161
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA-YGGCP--HAE 56
M ++ D + + +R + ++V DG V+ G H E
Sbjct: 1 MTITETDLAHLRRCVDLAREALDDGDE--PFGSVLVSADGKVLFEDRNRVRHGDATQHPE 58
Query: 57 VQALEE-AGEEAR-----GATAYVTLEPCSHYGRSP 86
A+ A E AT Y + E C S
Sbjct: 59 F-AISRWAAEHLTPRERASATVYTSGEHCPMCSASH 93
>gi|114704967|ref|ZP_01437875.1| putative pyrimidine reductase protein [Fulvimarina pelagi HTCC2506]
gi|114539752|gb|EAU42872.1| putative pyrimidine reductase protein [Fulvimarina pelagi HTCC2506]
Length = 201
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 4/123 (3%)
Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289
+ + P+ + L ++ + G
Sbjct: 65 YDIFAAHWPRVKDDPMADAINAATKFVVTHQSGPFDWQNTRHLSGLDQIPEVKKSDG-PD 123
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LL++G + + + L+D + L IV+G G +G K V GS
Sbjct: 124 LLIQGSSTLYPGLVERDLIDRLFLITFPIVMGSGKRAF---DGAAPKGLRLVEHRVSGSG 180
Query: 350 VCL 352
V +
Sbjct: 181 VMI 183
>gi|54023433|ref|YP_117675.1| hypothetical protein nfa14660 [Nocardia farcinica IFM 10152]
gi|54014941|dbj|BAD56311.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 190
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G G +P+ G + + + F + + L
Sbjct: 124 GSLSMNRALMAAGLVDRVQVTIFPVITGRTG-EAPIFRGAEDFDLELLDSRTFDNRIQEL 182
Query: 353 EYIG 356
Y
Sbjct: 183 IYRP 186
>gi|326331812|ref|ZP_08198099.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
gi|325950309|gb|EGD42362.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
Length = 202
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 38/169 (22%), Gaps = 1/169 (0%)
Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
N + H + + V V G
Sbjct: 1 MSLTRVHNFSISLDGFGTGEPQTLETPFGHAGERLHEWMFVDSTGVDDLFARQYSTGIGA 60
Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274
+ + + K + ++ D
Sbjct: 61 EIMGANKFGPPGWHEDPEW-KGWWGDNPPYHHPAFVLTHHTREPIEMEGGTTFLFRDATP 119
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ L +L+ GGA V F+ + LVD + + IV+G G
Sbjct: 120 AEVLEEARAAADGQDVLIGGGATVVRDFVRAGLVDLMHVAVVPIVLGRG 168
>gi|170760686|ref|YP_001788692.1| riboflavin biosynthesis protein RibD domain-containing protein
[Clostridium botulinum A3 str. Loch Maree]
gi|169407675|gb|ACA56086.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 173
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
++ + GG + F+ + ++D I+ ++G+ G P L
Sbjct: 106 KNIFLFGGGGLIDHFVKANVIDEYIVGIIPTILGK-GRPLFLGNN 149
>gi|299769998|ref|YP_003732024.1| dihydrofolate reductase [Acinetobacter sp. DR1]
gi|298700086|gb|ADI90651.1| dihydrofolate reductase [Acinetobacter sp. DR1]
Length = 191
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + T L P E + + + + + +L+
Sbjct: 47 TVIWGRATYQMMHNYWPTMLSNPEASEHERNHAEWIEKTEKIVFSTTLDTVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + L ++ G AH + L+D + S ++IG+ G+P +
Sbjct: 107 DHVEEEINKLKQQVGKDMVILGSPRFAHYLMQLDLIDEYKITVSPVLIGK-GLPLF-QGI 164
Query: 333 YLEKNFMCVRRDYF 346
+ N + F
Sbjct: 165 QQKTNLKLIENKTF 178
>gi|297192158|ref|ZP_06909556.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
gi|197720197|gb|EDY64105.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
Length = 193
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GGA VA I+ VD +++ +V+G G+P L F FG+
Sbjct: 127 DIYLCGGANVAGQLIDE--VDELVIKSYPVVLGS-GMPMFATPFRLSA-FSLDSVRAFGN 182
Query: 349 DVCLE-YIGKN 358
V + Y K+
Sbjct: 183 GVVVRQYSRKD 193
>gi|83955334|ref|ZP_00963989.1| cytidine and deoxycytidylate deaminase family protein
[Sulfitobacter sp. NAS-14.1]
gi|83840327|gb|EAP79501.1| cytidine and deoxycytidylate deaminase family protein
[Sulfitobacter sp. NAS-14.1]
Length = 151
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V +IV DG V+ + HAEV A+ A E G YVTLEPC
Sbjct: 24 PVGAVIVAPDGQVVAQAGNRTRELNDPTAHAEVLAIRAACAAAGSERLGGHALYVTLEPC 83
>gi|289522481|ref|ZP_06439335.1| putative cytosine deaminase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504317|gb|EFD25481.1| putative cytosine deaminase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 165
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV---TAYGGCPHAEVQAL 60
+++ A+ SR S N ++V + +++ +G T HAE+ +
Sbjct: 9 DHIKYLRLAIETSRKARE--SGNTPFGAVLVGPEGDVLLEQGNVEITEKRCTGHAELVLV 66
Query: 61 EEAGEEARG-----ATAYVTLEPCSHY 82
E+A + Y ++EPC+
Sbjct: 67 EKASQIYDKDFLWQCILYTSVEPCAMC 93
>gi|170696655|ref|ZP_02887773.1| bifunctional deaminase-reductase domain protein [Burkholderia
graminis C4D1M]
gi|170138437|gb|EDT06647.1| bifunctional deaminase-reductase domain protein [Burkholderia
graminis C4D1M]
Length = 208
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-RRDYFG 347
LL G + + LVD + L +++G G + F V +
Sbjct: 129 DLLTFGSGNMVRQLFAAGLVDELRLLVYPVILGRG--KRLFGDDAAACAFRLVQSVETSR 186
Query: 348 SDVCLEYIGK 357
+ Y+ +
Sbjct: 187 GVIITRYLRE 196
>gi|154417757|ref|XP_001581898.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121916129|gb|EAY20912.1| hypothetical protein TVAG_437380 [Trichomonas vaginalis G3]
Length = 238
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 20/214 (9%), Positives = 48/214 (22%), Gaps = 9/214 (4%)
Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212
G + + + PE
Sbjct: 24 YWNTENGSVTFNDYEWTGESYKPDAWLWGRRTFDAVLPSIDNPPVDENEKECPEGDFYAV 83
Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV----TENDDPVLALAFRKKNINII 268
+ + ++ + VI L I
Sbjct: 84 TDAGKYLVAMDPSGKLPWDRNTVKYMDRPESHVIEALTEKASPQYKNLLRRLNVSYIIAG 143
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-- 326
+ L + + L + GG + S + +++VD + L + +
Sbjct: 144 KDEIDWEILLTKLKKVFHINILSIAGGGMINWSAMKAKIVDELSLLVTAAADATNNVSLF 203
Query: 327 --SPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357
+P + F + ++ + ++YI K
Sbjct: 204 EANPYQTNTDPIEFTVKSIEKINANGIWIKYIPK 237
>gi|331693988|ref|YP_004330227.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326948677|gb|AEA22374.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 181
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 26/101 (25%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
S + V A N + ++ ++
Sbjct: 57 PAWSARTEEDDPGVPFFNNTAKHVVSASLTSADGWNNSHLLGGYDADVIRRFKDETDGAI 116
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
V G + + + LVD + L+ + +G G P
Sbjct: 117 YVSGSGTLVRAMLADGLVDELHLFVYPVALGTGPKLFPEGT 157
>gi|239832926|ref|ZP_04681255.1| deaminase-reductase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
gi|239825193|gb|EEQ96761.1| deaminase-reductase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
Length = 188
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306
+ ++ + +N D+ L+ L + + GG + +F+
Sbjct: 77 WAYGDQRCIVVTSRPVENPRGPLETRHDVDALIAELRALDDGDVWMLGGGQLQMAFLERG 136
Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEY 354
+D I +Y +IG G+P G+ + + V L Y
Sbjct: 137 ALDEIEIYVIPELIGG-GMPLFPPTGFKASP-VLLSARTLDRGCVRLHY 183
>gi|78356822|ref|YP_388271.1| tRNA-adenosine deaminase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219227|gb|ABB38576.1| tRNA-adenosine deaminase [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 172
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 38 DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
DG V+G G HAE+ A+ +A A VTLEPC
Sbjct: 55 DGAVLGSGRNRPIATCDPTAHAEILAIRQACIHTGNYRLDDAVLVVTLEPCHMC 108
>gi|271969361|ref|YP_003343557.1| guanine deaminase [Streptosporangium roseum DSM 43021]
gi|270512536|gb|ACZ90814.1| guanine deaminase [Streptosporangium roseum DSM 43021]
Length = 157
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 34 LIVKD-GIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
L+V G V+G GV HAE+ AL EA G T + EPC
Sbjct: 35 LVVDGTGTVLGSGVNRVRAHRDPTAHAEIVALREAAREHGPHALAGTTLLASGEPCPLC 93
>gi|13476925|ref|NP_108494.1| hypothetical protein mll8388 [Mesorhizobium loti MAFF303099]
gi|14027687|dbj|BAB54280.1| mll8388 [Mesorhizobium loti MAFF303099]
Length = 215
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGR 285
+ DS P + + Y + L
Sbjct: 85 RGEWPDDSWKGWWGDNPPYHVPVFVLTHHARAPITMEGGTTFYFVTDGIHSALEQAKAAA 144
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + + GG A ++ L+D + L S +++GEG
Sbjct: 145 GGKDVRIGGGVATIRQYLQESLIDEMHLAISPVLLGEG 182
>gi|313890945|ref|ZP_07824567.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus pseudoporcinus SPIN 20026]
gi|313120669|gb|EFR43786.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus pseudoporcinus SPIN 20026]
Length = 189
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)
Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272
+ M P+ + + + V + + N +I +
Sbjct: 50 WGRATYDMMYAYWPNRLTDPAATDYERRHAKWITDVEKVVASSTLESVDWNNSTLIKNNL 109
Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
+ L I G+ + LV G +A + ++VD + L S ++G G
Sbjct: 110 TKSIEELKIRDGQDI---LVLGSPRLARFLLAEKIVDKVTLTLSPTLVGNGLRLF----E 162
Query: 333 YLEKNFMCVRRDYF 346
+ + + + F
Sbjct: 163 NISSDLKLISSETF 176
>gi|298243536|ref|ZP_06967343.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297556590|gb|EFH90454.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 181
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CLEYIG 356
+ HS + L+D + I++ +G S L++G N V G V L Y
Sbjct: 122 LMHSLLEHNLIDEYRILVHPILLAKG--RSFLKDGAERVNLDLVDTTALGGGVTILTYQP 179
>gi|298251400|ref|ZP_06975203.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297545992|gb|EFH79860.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 178
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LLV+G A + L+D + +V+G+ G E ++ G
Sbjct: 111 LLVQGSADLVGLLAQHDLIDEYYFSVAPLVLGK-GKRLFREAEQIQLQLRDSHAYQTG-M 168
Query: 350 VCLEYIG 356
+ L Y
Sbjct: 169 LRLRYEP 175
>gi|167947681|ref|ZP_02534755.1| riboflavin biosynthesis protein RibD [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 57
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 307 LVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353
++D +++Y + ++G+ L++ G D+ +
Sbjct: 1 MIDELVIYMAPHIMGDSARGLFHLPLLKQMSQRIGLQISDLRKVGPDLRIT 51
>gi|54024713|ref|YP_118955.1| hypothetical protein nfa27440 [Nocardia farcinica IFM 10152]
gi|54016221|dbj|BAD57591.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 245
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + +V G G P+ G + + + ++ L
Sbjct: 179 GSLSMNRALMAAGLVDRVQITIFPVVTGRTG-DDPIFRGAADFDLELLESRTLDGNIQEL 237
Query: 353 EYIG 356
Y
Sbjct: 238 VYRP 241
>gi|269793447|ref|YP_003312902.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
gi|269095632|gb|ACZ20068.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
Length = 223
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 1/124 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + + V + D +
Sbjct: 77 MGRNKFEPRRGLADGEEWRGWWGEDPPFHTPVVVLTHRPRPTLEMAGGTTFHFVDAGPAE 136
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GGA+ F+ + LVD + + +V+G G LE+
Sbjct: 137 ALELARDLAGDLDVRIGGGASTVRQFLAADLVDEMHVALVPVVLGRGERLW-DGLEGLEQ 195
Query: 337 NFMC 340
F
Sbjct: 196 RFEV 199
>gi|296503699|ref|YP_003665399.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
gi|296324751|gb|ADH07679.1| pyrimidine reductase [Bacillus thuringiensis BMB171]
Length = 181
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 110 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 165
>gi|229073139|ref|ZP_04206308.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
F65185]
gi|229083067|ref|ZP_04215471.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
Rock4-2]
gi|228700225|gb|EEL52807.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
Rock4-2]
gi|228709991|gb|EEL61996.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
F65185]
Length = 166
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 95 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 150
>gi|229110616|ref|ZP_04240182.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
Rock1-15]
gi|229130958|ref|ZP_04259886.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-Cer4]
gi|228652456|gb|EEL08366.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-Cer4]
gi|228672867|gb|EEL28145.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
Rock1-15]
Length = 166
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 95 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 150
>gi|229145768|ref|ZP_04274149.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-ST24]
gi|228637749|gb|EEK94198.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-ST24]
Length = 166
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 95 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 150
>gi|218234677|ref|YP_002367898.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus B4264]
gi|229046870|ref|ZP_04192504.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
AH676]
gi|218162634|gb|ACK62626.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus B4264]
gi|228724503|gb|EEL75826.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
AH676]
Length = 181
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 110 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 165
>gi|30021268|ref|NP_832899.1| pyrimidine reductase [Bacillus cereus ATCC 14579]
gi|29896822|gb|AAP10100.1| Pyrimidine Reductase [Bacillus cereus ATCC 14579]
Length = 181
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 110 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGSG--KHLFKTGNDTKALKLIETRT 165
>gi|159903565|ref|YP_001550909.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9211]
gi|159888741|gb|ABX08955.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9211]
Length = 165
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEVQALEE 62
+M L + +G P + +I+ + G IG G T HAE+ AL +
Sbjct: 15 REWMRRLLNRANE-LGKEDEVPVI-AMILDNKGHCIGHGRNTRNTERDPLGHAELVALRQ 72
Query: 63 AG-----EEARGATAYVTLEPCSHY 82
A T VTLEPC
Sbjct: 73 AKWLKKDWRFNDCTIIVTLEPCQMC 97
>gi|329938756|ref|ZP_08288152.1| putative deaminase [Streptomyces griseoaurantiacus M045]
gi|329302247|gb|EGG46139.1| putative deaminase [Streptomyces griseoaurantiacus M045]
Length = 157
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ DG + G HAEV AL A G T VTLEPC
Sbjct: 18 PVGAVVLSADGTPLATGHNEREATGDPTAHAEVLALRRAAAATGEWRLSGCTLVVTLEPC 77
Query: 80 SHY 82
+
Sbjct: 78 TMC 80
>gi|302527351|ref|ZP_07279693.1| hypothetical protein SSMG_03733 [Streptomyces sp. AA4]
gi|302436246|gb|EFL08062.1| hypothetical protein SSMG_03733 [Streptomyces sp. AA4]
Length = 364
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ G + V GG ++A +++ L D + ++ + IV+G G P EE
Sbjct: 280 AVEQARAAAGGKDVTVGGGGSIASQVLHAGLADVLRIHLAPIVLGG-GTPLFPEENSAPV 338
Query: 337 NFM 339
Sbjct: 339 RLE 341
>gi|145595208|ref|YP_001159505.1| deaminase-reductase domain-containing protein [Salinispora tropica
CNB-440]
gi|145304545|gb|ABP55127.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 222
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L G + + GG+ +++N+ LVD + + ++ G G L EG
Sbjct: 140 HALDQARKAAGERDVRISGGSETILAYLNAGLVDEFSIALAPVLFGAGTR---LFEGVDA 196
Query: 336 KNFMCVRRD 344
+
Sbjct: 197 SRIALKQVQ 205
>gi|150377175|ref|YP_001313770.1| deaminase-reductase domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150031722|gb|ABR63837.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
medicae WSM419]
Length = 215
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
S P V + + + L +
Sbjct: 84 RGPWPDQSWRGWWGENPPYHGPVFVLTNHARPSLEMEGGTVFHFVTNGIEAALSSAREAA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GG+A ++N+RLVD + + + I++G G
Sbjct: 144 DGRDVRLGGGSATIRQYLNARLVDEMHIAIAPILLGSGEA 183
>gi|251782321|ref|YP_002996623.1| truncated dihydrofolate reductase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390950|dbj|BAH81409.1| truncated dihydrofolate reductase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|323127217|gb|ADX24514.1| hypothetical protein SDE12394_05130 [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 173
Score = 43.0 bits (99), Expect = 0.071, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ + GGA + HS I + L+D I+ ++G G P E++ +
Sbjct: 111 IWIFGGADLVHSLIEADLIDHYIIGIIPTILG-CGRPLF-TGNRQERHLRLIEST 163
>gi|256390926|ref|YP_003112490.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256357152|gb|ACU70649.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 192
Score = 43.0 bits (99), Expect = 0.071, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G A+ + + + LVD + + ++ G G +P+ +G + + + F G L
Sbjct: 126 GSLAMNRALMAAGLVDRVQVTIFPVLTGRTGA-APIFQGAEDFDLELIESRTFDGRTQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 IYRP 188
>gi|195623500|gb|ACG33580.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
Length = 186
Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVCNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMC 114
>gi|162452448|ref|YP_001614815.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
gi|161163030|emb|CAN94335.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
Length = 221
Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%)
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
VG V D G + + V
Sbjct: 61 VGRTGVDDDFAARGFENLGAWIMGRNMFGPQRGPWPDDGWQGWWGKNPPYHVPVFVLTHH 120
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
+ + L + + GG A ++ + L+D + L
Sbjct: 121 ARESFTMEGGTTFHFVTEGIHAALERAKEAAQGKDIRLGGGVATVRQYLTAGLIDELHLV 180
Query: 315 RSQIVIGEG 323
S +++G G
Sbjct: 181 ISPVLLGRG 189
>gi|83944514|ref|ZP_00956966.1| cytidine and deoxycytidylate deaminase family protein
[Sulfitobacter sp. EE-36]
gi|83844620|gb|EAP82505.1| cytidine and deoxycytidylate deaminase family protein
[Sulfitobacter sp. EE-36]
Length = 151
Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
V +IV DG V+ + HAEV A+ A E G YVTLEPC
Sbjct: 24 PVGAVIVAPDGQVVAQAGNRTRELNDPTAHAEVLAIRAACAAAGSERLGGHALYVTLEPC 83
>gi|258651839|ref|YP_003200995.1| hypothetical protein Namu_1614 [Nakamurella multipartita DSM 44233]
gi|258555064|gb|ACV78006.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233]
Length = 216
Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 28/92 (30%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ V + P ++ + + L G
Sbjct: 90 DPDWKGWWGDEPPFHAPVYVLTHTAPRPSMPMQGGTTFHFRSPAAIEEVLAEATAAAGGL 149
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+ V GG A +F+ + LVD + + + I++
Sbjct: 150 DVRVGGGVGTARAFLLAGLVDDLHVSIAPILL 181
>gi|146278266|ref|YP_001168425.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
17025]
gi|145556507|gb|ABP71120.1| CMP/dCMP deaminase, zinc-binding [Rhodobacter sphaeroides ATCC
17025]
Length = 114
Score = 43.0 bits (99), Expect = 0.073, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 50 GGCPHAEVQALEEA----GEEARGATAYVTLEPCSHY 82
HAE+ A+ A GE G YVTLEPC
Sbjct: 13 DPTAHAEMLAIRAACAELGERLTGCDLYVTLEPCPMC 49
>gi|226360891|ref|YP_002778669.1| hypothetical protein ROP_14770 [Rhodococcus opacus B4]
gi|226239376|dbj|BAH49724.1| hypothetical protein [Rhodococcus opacus B4]
Length = 181
Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 3/128 (2%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + V++ D + L G+
Sbjct: 55 DFRSYWPQQTDDRTGITDELNQIQKYVVSSTMSDPQWRNSTVLTGDWIDQVRTLKGQAGR 114
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V G + H+ I S LVD L+ +V G G P +GY + F +
Sbjct: 115 DIVVTGSIMLTHALIESGLVDEYRLFVYPVVQGRGRRLFP--DGYEKPGLQLAEARGFRN 172
Query: 349 DV-CLEYI 355
V L Y
Sbjct: 173 GVSLLHYT 180
>gi|159898045|ref|YP_001544292.1| deaminase-reductase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891084|gb|ABX04164.1| bifunctional deaminase-reductase domain protein [Herpetosiphon
aurantiacus ATCC 23779]
Length = 178
Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
+ ++ V + + I R +LL+ G +A
Sbjct: 58 WPESKDEGAEHMNNLVKYVPTNTLEQPEWNATFLKGDVIAQIRQLREEQNLLIYGSTVLA 117
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
S + L+D L +V+GEG L V
Sbjct: 118 DSLLKHNLIDEYRLLIYPVVVGEGQR---LFHPGTTATLKLVETRT 160
>gi|283780773|ref|YP_003371528.1| bifunctional deaminase-reductase domain-containing protein
[Pirellula staleyi DSM 6068]
gi|283439226|gb|ADB17668.1| bifunctional deaminase-reductase domain protein [Pirellula staleyi
DSM 6068]
Length = 189
Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ GG +A F ++ L+D +I+ + + + G+P L + +G
Sbjct: 116 WIVGGGELAGQFHDAGLLDELIIQITAVTL-ASGMPL-LPRNIITPPLKLTSVQQYGD 171
>gi|240171494|ref|ZP_04750153.1| deaminase-reductase domain-containing protein [Mycobacterium
kansasii ATCC 12478]
Length = 199
Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 45/171 (26%), Gaps = 10/171 (5%)
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
I G + DP + L S TA AP
Sbjct: 26 YIADAQGNIDWADPSEELHQYWNDFERETALSFYGRRLYELMSAYWPTADKAPDATPLII 85
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFIN 304
D + K + +L VT L E GA +A +
Sbjct: 86 DFAHIWRNLPKVVFSRTLESVAWNSRLERGDPVEVVTKLKAETDGRLEVAGATLAAPIVQ 145
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
+ LVD + + +G G P ++ + F G V L Y
Sbjct: 146 AGLVDEYRIVVTPTAVGGGTPFFPTLPSWIS--LRLLENRTFPGGAVLLRY 194
>gi|229819040|ref|YP_002880566.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564953|gb|ACQ78804.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 185
Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL-E 353
G +A I + LVD L+ + V+G G P + + V+ F S +
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFMTTSVVGGGKRFFP---DGVRLDLDLVQERSFDSGLIYAH 181
Query: 354 YI 355
Y
Sbjct: 182 YR 183
>gi|153008658|ref|YP_001369873.1| deaminase-reductase domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151560546|gb|ABS14044.1| bifunctional deaminase-reductase domain protein [Ochrobactrum
anthropi ATCC 49188]
Length = 228
Score = 43.0 bits (99), Expect = 0.075, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
L V G + + H + S LVD + L +++G+G + + F V
Sbjct: 136 DLSVSGSSELVHQLLASDLVDELRLLIYPVILGKG--KRLFDGQSVPSAFKLVSSTT 190
>gi|184158247|ref|YP_001846586.1| dihydrofolate reductase [Acinetobacter baumannii ACICU]
gi|183209841|gb|ACC57239.1| Dihydrofolate reductase [Acinetobacter baumannii ACICU]
gi|322508570|gb|ADX04024.1| Putative dihydrofolate reductase [Acinetobacter baumannii 1656-2]
gi|323518184|gb|ADX92565.1| dihydrofolate reductase [Acinetobacter baumannii TCDC-AB0715]
Length = 191
Score = 43.0 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLT 280
++ + T L P E + + + + + +L+
Sbjct: 47 TVIWGRATYKMMHNYWPTMLSNPEASEHERNHAEWIEKTEKIVFSTTLDTVEWNNSRLVK 106
Query: 281 ILVGRGVTSL--------LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
V + L ++ G AH + L+D + S +++G G+P +
Sbjct: 107 DHVEEEINKLKQQPGKDMVILGSPRFAHYLMQLGLIDEYKITVSPVLLGS-GLPLF-QGI 164
Query: 333 YLEKNFMCVRRDYF 346
+ + + F
Sbjct: 165 EQKTSLKLIENKTF 178
>gi|297585163|ref|YP_003700943.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
MLS10]
gi|297143620|gb|ADI00378.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens
MLS10]
Length = 175
Score = 43.0 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 32/125 (25%), Gaps = 44/125 (35%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV----KDGI-VIGRGVTAYG-GCP----- 53
++ FMS A S + V +IV KD ++ G Y G P
Sbjct: 21 DWEQYFMSKAYIASLRSTCGSR---RVGAVIVNSLDKDKRNILSTGYNGYPSGQPHCVDG 77
Query: 54 ---------------------------HAEVQA---LEEAGEEARGATAYVTLEPCSHYG 83
HAE A ++ G G + T PC
Sbjct: 78 GCPRFEAKKQGLIQSGEYQDEYPCDAFHAEANAMFQMQRRGISTEGCVLFSTTFPCRQCA 137
Query: 84 RSPPC 88
Sbjct: 138 EKING 142
>gi|152967578|ref|YP_001363362.1| bifunctional deaminase-reductase domain protein [Kineococcus
radiotolerans SRS30216]
gi|151362095|gb|ABS05098.1| bifunctional deaminase-reductase domain protein [Kineococcus
radiotolerans SRS30216]
Length = 208
Score = 43.0 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ V G A +A S ++ LVD L +++G G + E+ + +G+
Sbjct: 140 IAVHGSATLARSLADAGLVDRYHLLVFPVLLGA-GKRLFSDTDKDEQRLAVLEAQTYGNG 198
Query: 350 V-CLEY 354
V L Y
Sbjct: 199 VTKLVY 204
>gi|110669248|ref|YP_659059.1| cytosine/adenosine deaminases [Haloquadratum walsbyi DSM 16790]
gi|109626995|emb|CAJ53471.1| cytosine/adenosine deaminases [Haloquadratum walsbyi DSM 16790]
Length = 154
Score = 43.0 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 29/95 (30%), Gaps = 15/95 (15%)
Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52
M S FD M AL+ +R ++V+D V+ R T
Sbjct: 1 MIDSKFDTFDHEMHMQEALKLARESAARGDE--PFGSVLVRDDTVVMRESNHEITESDIR 58
Query: 53 PHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
H E+ A + Y T EPC
Sbjct: 59 RHPELHLAYRACQAYDSDERAEMVMYTTTEPCPMC 93
>gi|154250217|ref|YP_001411042.1| dihydrofolate reductase region [Fervidobacterium nodosum Rt17-B1]
gi|154154153|gb|ABS61385.1| dihydrofolate reductase region [Fervidobacterium nodosum Rt17-B1]
Length = 197
Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
++ + L G + V GG +V F+N +V I L +++ L
Sbjct: 110 SCSSREAVETLNKMGYNDICVIGGQSVFTQFLNEGIVTDIHLTIEPVILPGN---FYLFS 166
Query: 332 GYLEKNFMCV--RRDYFGS--DVCLEYIGK 357
+ + F + + + YI K
Sbjct: 167 NEITRKFDLILQNIRKLNDVGTINIHYIIK 196
>gi|288917447|ref|ZP_06411813.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288351150|gb|EFC85361.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 188
Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G A + + + LVD + L +V+G G E G + FG+ V +
Sbjct: 117 GSATLTRHLLQAGLVDELRLLVHPLVVGRG--KHLFETGSAPVGLALESQRTFGNGVTYQ 174
Query: 354 YIGK 357
Sbjct: 175 VYRP 178
>gi|170756464|ref|YP_001783000.1| riboflavin biosynthesis protein RibD domain-containing protein
[Clostridium botulinum B1 str. Okra]
gi|169121676|gb|ACA45512.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum B1 str. Okra]
Length = 173
Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
++ + GG + F+ + ++D I+ +++G+ G P L
Sbjct: 106 KNIFLFGGGGLIDHFVKANVIDEYIVRIIPMILGK-GRPLFLGNN 149
>gi|162461371|ref|NP_001105964.1| cytidine deaminase2 [Zea mays]
gi|119394647|gb|ABL74485.1| putative cytidine deaminase [Zea mays]
gi|119394649|gb|ABL74486.1| putative cytidine deaminase [Zea mays]
Length = 186
Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVCNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMC 114
>gi|260823635|ref|XP_002606186.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
gi|229291525|gb|EEN62196.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
Length = 560
Score = 43.0 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 11/210 (5%), Positives = 25/210 (11%), Gaps = 4/210 (1%)
Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127
G T Y P S D +
Sbjct: 348 HGCTRY-HHYPWSWCNTRSDDHGCTRYHHYPWSWCYTWSNDHGCTR--YHHYPWSWCNTR 404
Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187
+ + + ++ + + T +
Sbjct: 405 SDDHGCARYHHYPWNRCYTWSHNYSCNRYYHYPWSWCNTRSDHHGC-TRYHHYPWSWCYT 463
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
+G +
Sbjct: 464 WSHHYGCTRYHHYPWSWCNTRSHDHGCTRYHHYPWSRCNTRSHDHGCTRYHNYPWNRCYT 523
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ + + N D K
Sbjct: 524 WSHHYGCTRNNDYTWSWCNTWSDDHGCTSK 553
>gi|209517139|ref|ZP_03265985.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
H160]
gi|209502398|gb|EEA02408.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
H160]
Length = 208
Score = 43.0 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G + + + + LVD + L +++G G + V G +
Sbjct: 134 GSSDMVRQLLAAGLVDELRLLIYPVILGHGRRLFGDDALASAFTLEHVTSTP-GGVLITR 192
Query: 354 YIG 356
Y
Sbjct: 193 YTR 195
>gi|226309899|ref|YP_002769793.1| hypothetical protein BBR47_03120 [Brevibacillus brevis NBRC 100599]
gi|226092847|dbj|BAH41289.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 183
Score = 43.0 bits (99), Expect = 0.081, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
L + GG +A + + +L+D ++L + +++G G+P V + +
Sbjct: 115 LWLCGGGELAGALLAHQLIDQLVLKVNPVMVG-EGVPLF-GSAKPRLKLELVDMKQYAN 171
>gi|326779485|ref|ZP_08238750.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|326659818|gb|EGE44664.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 192
Score = 43.0 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDV 350
A +A + L+D + ++ + + +G G G ++ V FG
Sbjct: 124 ADIARQALEHDLIDELQVFVAPVFLG-DGTRIFDVPGGRRVDWELVDIYPDSPRSFGR-- 180
Query: 351 CLEYIGK 357
Y K
Sbjct: 181 --TYRPK 185
>gi|320006748|gb|ADW01598.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 178
Score = 43.0 bits (99), Expect = 0.082, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GA VA + LVD I++Y +++G+G +P + + G+
Sbjct: 117 GADVAAQCLQRGLVDEILVYVLPVLLGDGVRFAP-------PGLHRIDLEPLGN 163
>gi|308179147|ref|YP_003918553.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
gi|307746610|emb|CBT77582.1| RibD domain-containing protein [Arthrobacter arilaitensis Re117]
Length = 196
Score = 42.6 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G A+ HS + + LVD I + ++ G G +P+ G + + V + L
Sbjct: 126 GSLAMNHSLLAAGLVDFIQVTIFPVLTGHSG-SAPVLGGVDDYDLELVNSKLLDGRIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 TYRP 188
>gi|307729374|ref|YP_003906598.1| bifunctional deaminase-reductase domain-containing protein
[Burkholderia sp. CCGE1003]
gi|307583909|gb|ADN57307.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
CCGE1003]
Length = 212
Score = 42.6 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LL G + + + LVD + L +++G G G
Sbjct: 130 LLTFGSGNMVAQLLAADLVDELRLVIYPLILGHGKRLFGENAPASAFRLAQSVSTPRGV- 188
Query: 350 VCLEYIGK 357
+ Y+
Sbjct: 189 IITRYVRD 196
>gi|168181994|ref|ZP_02616658.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Bf]
gi|237796818|ref|YP_002864370.1| riboflavin biosynthesis protein RibD C- domain-containing protein
[Clostridium botulinum Ba4 str. 657]
gi|182674729|gb|EDT86690.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Bf]
gi|229263014|gb|ACQ54047.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Ba4 str. 657]
Length = 173
Score = 42.6 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
++ + GG + F+ + +D I+ ++G+ G P L
Sbjct: 106 KNIFLFGGGGLIDHFVKANAIDEYIVGIIPTILGK-GRPLFLGNN 149
>gi|239944699|ref|ZP_04696636.1| bifunctional deaminase-reductase domain protein [Streptomyces
roseosporus NRRL 15998]
gi|239991163|ref|ZP_04711827.1| bifunctional deaminase-reductase domain protein [Streptomyces
roseosporus NRRL 11379]
gi|291448159|ref|ZP_06587549.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
gi|291351106|gb|EFE78010.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces roseosporus NRRL 15998]
Length = 186
Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
G +A I + LVD L+ + V+G G P + + V F
Sbjct: 125 GPNLAAQAIAAGLVDEYHLFITTSVVGGGKRFFP---DGVRLDLELVEERAF 173
>gi|162454918|ref|YP_001617285.1| hypothetical protein sce6636 [Sorangium cellulosum 'So ce 56']
gi|161165500|emb|CAN96805.1| hypothetical protein sce6636 [Sorangium cellulosum 'So ce 56']
Length = 195
Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGS 348
GAA+ + I RLVD L +V+G G +PL ++ + +R G
Sbjct: 131 AGAALVSTLIEHRLVDEFRLIVHPVVLGGG---TPLFARRDKRISLRQIRTQNLGG 183
>gi|326329004|ref|ZP_08195333.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
gi|325953086|gb|EGD45097.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
Length = 196
Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+ + + G + + GG V + + + LVD I+L++ +++G G
Sbjct: 106 HDRQTFTTTIEEAIAVAKEQAGGKDVGLMGGGVVTEA-LTAGLVDEIVLHQVPVLLGSGR 164
Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
E V L Y
Sbjct: 165 R--FFNELPEHIALEIVDVVPASGVTHLHYRV 194
>gi|239982690|ref|ZP_04705214.1| hypothetical protein SalbJ_24889 [Streptomyces albus J1074]
gi|291454539|ref|ZP_06593929.1| predicted protein [Streptomyces albus J1074]
gi|291357488|gb|EFE84390.1| predicted protein [Streptomyces albus J1074]
Length = 90
Score = 42.6 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 294 GGAAV-------AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GG + + L+D I L+ + +++G G+ G +
Sbjct: 13 GGGNLEVFSPTAGRQLLERGLIDEIDLHVAPVLLG-DGVRLFDNPGGAPVRLALLN---- 67
Query: 347 GSD----VCLEYIG 356
G D V L Y
Sbjct: 68 GDDPAREVNLRYRP 81
>gi|223984587|ref|ZP_03634714.1| hypothetical protein HOLDEFILI_02010 [Holdemania filiformis DSM
12042]
gi|223963434|gb|EEF67819.1| hypothetical protein HOLDEFILI_02010 [Holdemania filiformis DSM
12042]
Length = 184
Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GGA V FI + VD I+ I++G+G + + + +
Sbjct: 111 KDIWLFGGAGVTDPFIRADAVDEYIVGIIPILLGQGRRLFHEGFASIALHL---EQFWID 167
Query: 348 SDVCL-EYIGK 357
V + Y +
Sbjct: 168 DGVVVMRYRRR 178
>gi|327540848|gb|EGF27409.1| guanine deaminase [Rhodopirellula baltica WH47]
Length = 155
Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 30 SVAC-LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
+ G I HAEV A+ +A ++ G T EPC
Sbjct: 23 PFGAGVFTDSGKQIAVAHNQVVSRCDPTAHAEVVAIGKAAKKLGDPDLSGLWLVSTGEPC 82
Query: 80 SHY 82
Sbjct: 83 PMC 85
>gi|311743479|ref|ZP_07717285.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
gi|311312609|gb|EFQ82520.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium
marinum DSM 15272]
Length = 193
Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L V GG +A + L+D +++ + + +G G +PL ++
Sbjct: 113 RDLWVVGGGDIAGRLAVAGLLDEVVVSIAPVTLGSG---APLLPHRVDLRLE 161
>gi|219115761|ref|XP_002178676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410411|gb|EEC50341.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 299
Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
GV L+VEGG A F+ VD +IL + + + E+ ++ + +
Sbjct: 215 GVNHLMVEGGPLTARQFLYEHQVDRVILVHASLCFRQPLESGLTEKVLVDAGLEKLGTEP 274
Query: 346 FGSDVCLEYIGKNL 359
G D + L
Sbjct: 275 CGVDQIEYWSRPEL 288
>gi|190890543|ref|YP_001977085.1| cytosine deaminase [Rhizobium etli CIAT 652]
gi|190695822|gb|ACE89907.1| cytosine deaminase protein [Rhizobium etli CIAT 652]
Length = 145
Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 29/92 (31%), Gaps = 33/92 (35%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT------AYGG---------CPHA 55
M AL + G P IG V + G HA
Sbjct: 1 MEMALEEA-RAAGERGEVP------------IGAVVVVDDIAVSRSGNRTRELNDVTAHA 47
Query: 56 EVQALEEAG-----EEARGATAYVTLEPCSHY 82
E+ A+ A E GA YVTLEPC+
Sbjct: 48 EIAAIRLACEALGQERLAGADLYVTLEPCTMC 79
>gi|319641309|ref|ZP_07996006.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_40A]
gi|317387055|gb|EFV67937.1| riboflavin biosynthesis protein RibD domain-containing protein
[Bacteroides sp. 3_1_40A]
Length = 192
Score = 42.6 bits (98), Expect = 0.089, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG V +N LVD + + +++G GIP E + + +
Sbjct: 124 KDIWLVGGGQVITLLLNHDLVDEMQICYIPVILG-NGIPLF-PNQPKESTWKFAGSEAYD 181
Query: 348 SDV-CLEYI 355
S + + Y+
Sbjct: 182 SGIVKITYV 190
>gi|155122216|gb|ABT14084.1| hypothetical protein MT325_M530L [Paramecium bursaria chlorella
virus MT325]
Length = 144
Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 23/95 (24%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------TAYGGCP---- 53
+++ + + N VA L++ + + G T P
Sbjct: 8 KYLQLVEFQAE--LFSKDPNTKVAALVLDNNQNIRSTGFNGLPRGFEETTERWSKPIKYD 65
Query: 54 ---HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE A+ A G T + TL PC+
Sbjct: 66 YVVHAEANAICSAARNGATLAGCTLFSTLFPCNEC 100
>gi|66392081|ref|YP_239303.1| putative deoxycytidylate deaminase [Xanthomonas phage Xp15]
gi|62529191|gb|AAX84874.1| putative deoxycytidylate deaminase [Xanthomonas phage Xp15]
Length = 160
Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 32/87 (36%)
Query: 25 TSTNPSVACLIVKD-GIVIGRGVTAYGGCP----------------------------HA 55
T V C++V D V+ G G P HA
Sbjct: 13 TCKRRQVGCILVDDLNHVLATGY---NGTPRNVAHCGSHICPGMNASSGTQLDGCMATHA 69
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHY 82
E AL + + + T Y T +PC
Sbjct: 70 EQNALLQCMDVEKIHTVYCTTQPCLTC 96
>gi|296107600|ref|YP_003619301.1| dihydrofolate reductase [Legionella pneumophila 2300/99 Alcoy]
gi|295649502|gb|ADG25349.1| dihydrofolate reductase [Legionella pneumophila 2300/99 Alcoy]
Length = 181
Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 2/116 (1%)
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
T P + + + +II + L++ L +G+ + ++GG +
Sbjct: 64 TFDEWPYGSIPVIVMSSKPIQIPEHLQHIITVSNQSPPDLVSELSLQGIQHVYLDGGITI 123
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
F+ + LV+ + + ++I G + ++ G V + Y
Sbjct: 124 QG-FLQNNLVNEMTITVIPVLIDSGRSLFGSLKNDIKLTHRLTTSYP-GGFVQINY 177
>gi|119899277|ref|YP_934490.1| dihydrofolate reductase [Azoarcus sp. BH72]
gi|119671690|emb|CAL95603.1| dihydrofolate reductase, putative [Azoarcus sp. BH72]
Length = 181
Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L L GV + V+GG + F+ + L+D + + +++G G + +
Sbjct: 102 ALTKRLEAEGVRRIYVDGGITI-QRFLAAGLIDDLTVTTIPVLLGSGRRLFGALDADVWL 160
Query: 337 NFMCVRRDYFGSDVCLEYIGKN 358
+ R FG V Y +
Sbjct: 161 ERVATRAFPFG-FVQTTYRVRR 181
>gi|32473097|ref|NP_866091.1| cytidine and deoxycytidylate deaminase family protein
[Rhodopirellula baltica SH 1]
gi|32397776|emb|CAD73777.1| probable cytidine and deoxycytidylate deaminase family protein
[Rhodopirellula baltica SH 1]
Length = 165
Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 30 SVAC-LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEE-----ARGATAYVTLEPC 79
+ G I HAEV A+ +A ++ G T EPC
Sbjct: 33 PFGAGVFTDSGKQIAVAHNQVVSRCDPTAHAEVMAIGKAAKKLGDPDLSGLWLVSTGEPC 92
Query: 80 SHY 82
Sbjct: 93 PMC 95
>gi|327398273|ref|YP_004339142.1| CMP/dCMP deaminase zinc-binding protein [Hippea maritima DSM 10411]
gi|327180902|gb|AEA33083.1| CMP/dCMP deaminase zinc-binding protein [Hippea maritima DSM 10411]
Length = 183
Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEVQA 59
D M A+ ++ + I K+G ++ GV HAE+ A
Sbjct: 23 KEDKEKMLFAIELAKLSIRNGGG--PFGAAIFSKEGKLVSCGVNLVTKEKLSILHAEIVA 80
Query: 60 LEEAGEEARGAT--------AYVTLEPCSHY 82
A ++ + + + + EPC+
Sbjct: 81 FIMAQKKLKTYSLSEAGYFELFSSSEPCAMC 111
>gi|312129210|ref|YP_003996550.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
gi|311905756|gb|ADQ16197.1| bifunctional deaminase-reductase domain protein [Leadbetterella
byssophila DSM 17132]
Length = 181
Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ + + ++ + + N+ Y + + + I G + + GGA + +F++
Sbjct: 70 IWKAIHSKNKIVFTRQIRNDNNVTYINSDITQSVEQIKAKDG-KDIWLYGGAKLIETFVD 128
Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGKN 358
+L+D L +V+G G E N + F S V L Y +
Sbjct: 129 RKLIDIYRLSVHPVVLGNG--KPLFENLKQRLNLELLSVKKFRSGVVQLIYKNEK 181
>gi|182437612|ref|YP_001825331.1| hypothetical protein SGR_3819 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466128|dbj|BAG20648.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 214
Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 27/99 (27%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
+ P +F + + D L
Sbjct: 83 PQRGPWEDHAWQGWWGDEPPFHTPVFVMTHHTRPSFTLSDTTFHFVDADPATVLDRAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG F+++ L+D++ + + + +G G
Sbjct: 143 ADGKDVRLGGGVTTIREFLDADLIDTLHVAVAPVKLGTG 181
>gi|114703609|emb|CAL46259.1| cytidine deaminase [Paspalum simplex]
Length = 148
Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F+S A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLSKAVEEAYRGV-DCGDGGPFGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMC 114
>gi|294633377|ref|ZP_06711936.1| DNA-binding protein [Streptomyces sp. e14]
gi|292831158|gb|EFF89508.1| DNA-binding protein [Streptomyces sp. e14]
Length = 214
Score = 42.6 bits (98), Expect = 0.093, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 26/99 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +F + + L
Sbjct: 83 PQRGPWQNHEWRGWWGEEPPFHTPVFVMTHHERPSFTLSDTTFHFVSGDPATVLDRAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG + F+++ LVD++ + + + +G G
Sbjct: 143 ARGKDVRLGGGVSTIRQFLDADLVDTLHVAVAPVKLGSG 181
>gi|111020795|ref|YP_703767.1| hypothetical protein RHA1_ro03809 [Rhodococcus jostii RHA1]
gi|110820325|gb|ABG95609.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 227
Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G A+ + + + LVD + + ++ G+ G P+ +G + + + + L
Sbjct: 160 GSLAMNRALMAAGLVDRLQVTIFPVITGQTG-DDPIFQGGADFDLELLENRTLDGHIQEL 218
Query: 353 EYIG 356
Y
Sbjct: 219 IYRP 222
>gi|298292467|ref|YP_003694406.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
gi|296928978|gb|ADH89787.1| bifunctional deaminase-reductase domain protein [Starkeya novella
DSM 506]
Length = 176
Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V GG + +FI + + + L+ +++G G + P E + + F +
Sbjct: 108 DVWVIGGGGLQSAFIAAGALRRLDLFVIPVLLGGGVLLFPPGE-TPARGLALEATESFAN 166
Query: 349 D-VCLEY 354
V L Y
Sbjct: 167 GMVRLRY 173
>gi|284043910|ref|YP_003394250.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
14684]
gi|283948131|gb|ADB50875.1| CMP/dCMP deaminase zinc-binding protein [Conexibacter woesei DSM
14684]
Length = 195
Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 28 NPSVACLIVKDGIVIGRGVT---AYGGCP--HAEVQALEEAGEEAR------GATAYVTL 76
N V ++V+DG V+ G HAE +A+++ R G + +L
Sbjct: 52 NYGVGAVLVRDGEVVAEGRNRLLEPYVRTDCHAETEAVDQFEARFRDFPDATGTVLWTSL 111
Query: 77 EPCSHY 82
E C
Sbjct: 112 ECCPMC 117
>gi|291300821|ref|YP_003512099.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290570041|gb|ADD43006.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 185
Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-----V 350
+ + L+D I L+ S +++G G+ G + V G+D +
Sbjct: 124 PTIGAQLLERGLIDEIDLHISPVLLG-DGVRLFHNPGGQPVHLNLV-----GADEPTVEI 177
Query: 351 CLEYIG 356
+ Y
Sbjct: 178 NVRYRP 183
>gi|148555485|ref|YP_001263067.1| deaminase-reductase domain-containing protein [Sphingomonas
wittichii RW1]
gi|148500675|gb|ABQ68929.1| bifunctional deaminase-reductase domain protein [Sphingomonas
wittichii RW1]
Length = 217
Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 34/121 (28%), Gaps = 5/121 (4%)
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ + + I+ DP++ + +
Sbjct: 90 PWNGDEWTGWWGDEPPFHASTFILTHHRRDPLVMAGGTVFHFVTDGIGAALEQAKAAA-- 147
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG + ++ + LVD + L + +++G G + +
Sbjct: 148 --GDRDVKIGGGVSTLRQYLAAGLVDELHLAIAPVLLGRGEA-LFAGLDLPALGYRVLSS 204
Query: 344 D 344
+
Sbjct: 205 E 205
>gi|319952315|ref|YP_004163582.1| cytidine deaminase [Cellulophaga algicola DSM 14237]
gi|319420975|gb|ADV48084.1| cytidine deaminase [Cellulophaga algicola DSM 14237]
Length = 160
Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGG----CPHAE 56
++ D + M A+ +R + +N V +++++G V+ G AE
Sbjct: 17 KLAEEDLQLMKQAV-LARGNAYAPYSNFHVGAAVLLENGEVV-IGNNQENASYPSGLCAE 74
Query: 57 VQALEEAGEEARG 69
A+ +AG + G
Sbjct: 75 RVAIFQAGAKFPG 87
>gi|19552206|ref|NP_600208.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032]
gi|62389871|ref|YP_225273.1| pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
glutamicum ATCC 13032]
gi|21323747|dbj|BAB98373.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
glutamicum ATCC 13032]
gi|41325206|emb|CAF19687.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium
glutamicum ATCC 13032]
Length = 110
Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRD 344
+++ GG + S + L D + + I GE S E L F +
Sbjct: 31 IILGGGGTLNWSMLRDGLCDEVSIVMMPIADGEKHTHSLFEADEKYSAPLPIGFSLASVE 90
Query: 345 YFGSD-VCLEY 354
V + Y
Sbjct: 91 PLEDGSVWMRY 101
>gi|145221035|ref|YP_001131713.1| bifunctional deaminase-reductase-like protein [Mycobacterium gilvum
PYR-GCK]
gi|315441993|ref|YP_004074872.1| dihydrofolate reductase [Mycobacterium sp. Spyr1]
gi|145213521|gb|ABP42925.1| bifunctional deaminase-reductase-like protein [Mycobacterium gilvum
PYR-GCK]
gi|315260296|gb|ADT97037.1| dihydrofolate reductase [Mycobacterium sp. Spyr1]
Length = 173
Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
++ V GG +A F + L+D +I+ + +G G
Sbjct: 109 RNVWVVGGGDLARQFAAAGLIDEMIVSYAPCTLGAG 144
>gi|271965673|ref|YP_003339869.1| hypothetical protein Sros_4224 [Streptosporangium roseum DSM 43021]
gi|270508848|gb|ACZ87126.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 178
Score = 42.6 bits (98), Expect = 0.097, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ V G + + +++ L+D + L I++G G E+G ++ + FG
Sbjct: 110 KDISVSGSITLTRALLHAGLIDDLHLLVHPIILGAGQR--LFEDGTEQRKLVLADSATFG 167
Query: 348 SDVC-LEYIG 356
+ V L Y
Sbjct: 168 TGVVHLTYQP 177
>gi|255079548|ref|XP_002503354.1| predicted protein [Micromonas sp. RCC299]
gi|226518620|gb|ACO64612.1| predicted protein [Micromonas sp. RCC299]
Length = 287
Score = 42.6 bits (98), Expect = 0.097, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYF 346
+ V+GG + S + VD ++L + IG G + + + +
Sbjct: 214 RRVYVDGGMTI-RSLLEEDQVDEMVLTSVPVTIGRGTSLWGFDTKDKRDYRWSVTSSEPI 272
Query: 347 G-SDVCLEYIG 356
G V Y
Sbjct: 273 GRGMVKTTYKR 283
>gi|115471365|ref|NP_001059281.1| Os07g0245100 [Oryza sativa Japonica Group]
gi|113610817|dbj|BAF21195.1| Os07g0245100 [Oryza sativa Japonica Group]
Length = 186
Score = 42.6 bits (98), Expect = 0.098, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ Y + EPC + + + D
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDF 143
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 144 IADALRGTGFYQKANMEI 161
>gi|146297923|ref|YP_001192514.1| deaminase-reductase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146152341|gb|ABQ03195.1| bifunctional deaminase-reductase domain protein [Flavobacterium
johnsoniae UW101]
Length = 180
Score = 42.6 bits (98), Expect = 0.098, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 4/128 (3%)
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+ ++ + + + + + + + N ++ + K+ I +G +
Sbjct: 56 NYEADENADLAEKEMWNGIHSKNKFVFSSQNRNDENAVFITADLITKVNEIKNQQG-KDI 114
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
+ GGA++ +FIN L+D + IV+G G E + F S V
Sbjct: 115 WLYGGASLIKTFINLNLIDVYKISVHPIVLGSG--KPLFENLSDRIGLKLMDTRVFKSGV 172
Query: 351 C-LEYIGK 357
L Y +
Sbjct: 173 VELTYQPE 180
>gi|326798330|ref|YP_004316149.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
gi|326549094|gb|ADZ77479.1| bifunctional deaminase-reductase domain protein [Sphingobacterium
sp. 21]
Length = 183
Score = 42.6 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYI 355
++ I + L+D L I++G G N + + + S V L Y+
Sbjct: 122 SLLPELIRAGLIDEFNLVVHPIIVGRGRPLLAAGSLQENLNLKLIDKKFLKSGYVALHYL 181
Query: 356 GK 357
K
Sbjct: 182 KK 183
>gi|332668995|ref|YP_004452003.1| bifunctional deaminase-reductase domain-containing protein
[Cellulomonas fimi ATCC 484]
gi|332338033|gb|AEE44616.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
ATCC 484]
Length = 216
Score = 42.6 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 1/119 (0%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
+S P + L
Sbjct: 86 RGPWPDESWTGWWGDEPPYHCDVFVLTHHPRRPLELGGTTFHFVTDGVHAALDRAREAAA 145
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ + GGAA ++ + LVD + L + +++G G + L +
Sbjct: 146 GLDVRLGGGAATVRQYLRAHLVDDLHLVVAPVLLG-RGERLFEDLADLPAVYRVASTRQ 203
>gi|261406549|ref|YP_003242790.1| hypothetical protein GYMC10_2712 [Paenibacillus sp. Y412MC10]
gi|261283012|gb|ACX64983.1| hypothetical protein GYMC10_2712 [Paenibacillus sp. Y412MC10]
Length = 187
Score = 42.6 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
N I + + ++ ++ VE G FI L D + L+ +++
Sbjct: 94 WINSQQILVNGENSMAHEIEMLKNREGNISVESGVRTWQLFIQHDLFDDLWLFIHPVIVS 153
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+G L N +G+ V Y K
Sbjct: 154 QGERLFALANKRFTMNLN--SSKTYGNGVLGLYYSK 187
>gi|15805630|ref|NP_294326.1| cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase
domain-containing protein [Deinococcus radiodurans R1]
gi|6458301|gb|AAF10182.1|AE001918_7 cytidine/deoxycytidylate deaminase/nudix/methyltransferase domains
protein [Deinococcus radiodurans R1]
Length = 548
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 24/95 (25%)
Query: 14 ALRFSRWH-VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--------------HAEV 57
A+ + + + + IV G ++GRG G P HAE+
Sbjct: 12 AMSEAWNGFLYGSYP---IGACIVDAQGNIVGRGRN-RLGEPRRAHAGVIGGHDLAHAEI 67
Query: 58 QALEEAGEEAR----GATAYVTLEPCSHYGRSPPC 88
AL + R T T+EPC +
Sbjct: 68 NALLSVPDLRRPECLSWTVLTTVEPCPQCAGAVAM 102
>gi|284043844|ref|YP_003394184.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
gi|283948065|gb|ADB50809.1| bifunctional deaminase-reductase domain protein [Conexibacter
woesei DSM 14684]
Length = 197
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G A++A + LVD +L I++G G P + + V +
Sbjct: 129 LQVIGSASLAAQLVEHDLVDEYVLMVEPILLGGGKRVFPADGR--ARTLELVSTATTSTG 186
Query: 350 VCL-EYI 355
V + Y
Sbjct: 187 VLICTYR 193
>gi|149925488|ref|ZP_01913752.1| hypothetical protein LMED105_04672 [Limnobacter sp. MED105]
gi|149825605|gb|EDM84813.1| hypothetical protein LMED105_04672 [Limnobacter sp. MED105]
Length = 182
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L +GV + ++GG SF+ LV+SI + +++G+G ++
Sbjct: 101 VLIERLSQQGVKKVYLDGG-QTIQSFLAEGLVNSITVTTIPVLLGKGKPLFGKLSSDVKL 159
Query: 337 NFMCVRRDYFG 347
+ FG
Sbjct: 160 KHKSTKAYPFG 170
>gi|317153179|ref|YP_004121227.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316943430|gb|ADU62481.1| CMP/dCMP deaminase zinc-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 165
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 23/101 (22%)
Query: 1 MPVSSFD-------ARFMSAALRFSRWH--VGLTSTNPSVACLIVK-DGIVIGRGVTAYG 50
MP++ D M A + G + + + DG ++
Sbjct: 1 MPLTPPDPPAGTSWRSLMDVAFAQACMAAKEGES----PIGAALFAPDGALLAAARNNPV 56
Query: 51 G----CPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
G HAEV L +A G VTLEPC
Sbjct: 57 GLNDPTAHAEVLCLRQAAARLGNYRLTGTILAVTLEPCLMC 97
>gi|162461226|ref|NP_001105963.1| cytidine deaminase1 [Zea mays]
gi|119394643|gb|ABL74483.1| putative cytidine deaminase [Zea mays]
gi|119394645|gb|ABL74484.1| putative cytidine deaminase [Zea mays]
gi|195654311|gb|ACG46623.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
Length = 186
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ Y + EPC + + + D
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDF 143
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 144 IADALRGTGFYQKANMEI 161
>gi|330842863|ref|XP_003293388.1| hypothetical protein DICPUDRAFT_58458 [Dictyostelium purpureum]
gi|325076278|gb|EGC30077.1| hypothetical protein DICPUDRAFT_58458 [Dictyostelium purpureum]
Length = 221
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-TAYGGCPHAEVQALEEA 63
F ++M A++ + N A IV K+G V+ GV T H E++A+
Sbjct: 48 FHEKYMRIAIQVA------IDNNAKFAAAIVHKNGTVMCTGVNTGRARIYHGEIEAIVNC 101
Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ Y T EPC + ++F V +
Sbjct: 102 TQMYGKKTWEDHYLYTTGEPCVMCSGAIMWSKFDKTIFASYVNNMYCERCFNQLPMDSNE 161
Query: 119 LSQKGIIVDRM 129
+ + G ++
Sbjct: 162 IFKLGYGINHN 172
>gi|260425752|ref|ZP_05779732.1| cytidine/deoxycytidylate deaminase family protein [Citreicella
sp. SE45]
gi|260423692|gb|EEX16942.1| cytidine/deoxycytidylate deaminase family protein [Citreicella
sp. SE45]
Length = 149
Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 38 DGIVIGRGVTA----YGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
DG V+ HAE+ AL A E G YVTLEPC
Sbjct: 33 DGRVVAAAGNRTRELNDPSAHAEILALRAACADAGSERLPGHDLYVTLEPCPMC 86
>gi|218288258|ref|ZP_03492557.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Alicyclobacillus acidocaldarius LAA1]
gi|218241617|gb|EED08790.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Alicyclobacillus acidocaldarius LAA1]
Length = 522
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
+ DA + ALRF+ V +N ++V + +G G AE+ AL
Sbjct: 402 KRTPTDAEY--EALRFAWRAVQFVKSN----AIVVAERDKTLGIGAGQMNRVGAAEI-AL 454
Query: 61 EEAGEEARGATA 72
+AG A+GA
Sbjct: 455 RQAGARAKGAVL 466
>gi|171912543|ref|ZP_02928013.1| bifunctional deaminase-reductase-like protein [Verrucomicrobium
spinosum DSM 4136]
Length = 203
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 33/146 (22%)
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
Q G + D + G + K
Sbjct: 26 HQWFFPTRTFQQMHGDGDGTTGIDNDFAQRGMTNIGAWILGRNMFAHSRGPWVDDGWKGW 85
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
+ V + + L G + + GGAA
Sbjct: 86 WGENPPYHVPVFILTHHARPSIEMEGGTTFHFVTDGIHAALARAKAAAGDKDVRIGGGAA 145
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323
++ + LVD + L + + +G G
Sbjct: 146 TIRQYLEAGLVDEMHLAIAPVALGHG 171
>gi|94985053|ref|YP_604417.1| bifunctional deaminase-reductase-like protein [Deinococcus
geothermalis DSM 11300]
gi|94555334|gb|ABF45248.1| bifunctional deaminase-reductase-like protein [Deinococcus
geothermalis DSM 11300]
Length = 180
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
LL+ G + + + L+D L+ +V+G G P EG N +
Sbjct: 110 QDLLIYGSGTLVQTLMAHHLIDEYRLWLYPVVLGRGQRLFP--EGAPPLNLKRLDVRPLA 167
Query: 348 SD-VCLEYIGKN 358
S V L Y ++
Sbjct: 168 SGVVILTYGPQD 179
>gi|310817531|ref|YP_003949889.1| hypothetical protein STAUR_0253 [Stigmatella aurantiaca DW4/3-1]
gi|309390603|gb|ADO68062.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 96
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 18/75 (24%)
Query: 296 AAVAHSFINS-------------RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ FI L+D +Y +V+G G P +
Sbjct: 25 PTLFRHFIEEAQGQAGSVYGTELGLIDEYRIYLHPVVLGH-GKPYFAGPR---PPLRLMA 80
Query: 343 RDYFGSD-VCLEYIG 356
D G D + L Y+
Sbjct: 81 NDRIGQDVIRLTYVP 95
>gi|114331695|ref|YP_747917.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91]
gi|114308709|gb|ABI59952.1| CMP/dCMP deaminase, zinc-binding protein [Nitrosomonas eutropha
C91]
Length = 165
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA---YGGCPHAE 56
M + D F+ + + + ++V +G+V+ H E
Sbjct: 1 MAIKEADLHFLRRCIALAEEALEAGDE--PFGSVLVSGEGVVLLEARNQVSSGDQTRHPE 58
Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSP 86
+ A EE AT Y + E C +
Sbjct: 59 FEISRWAATHMTPEERNKATVYTSSEHCPMCSAAH 93
>gi|119394651|gb|ABL74487.1| putative cytidine deaminase [Zea mays]
gi|119394653|gb|ABL74488.1| putative cytidine deaminase [Zea mays]
Length = 186
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVCNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ Y + EPC + + + D
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDF 143
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 144 IADALRGTGFYQKANMEI 161
>gi|19113382|ref|NP_596590.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Schizosaccharomyces pombe 972h-]
gi|54036317|sp|Q9P7L3|RIB7_SCHPO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil
reductase; AltName: Full=HTP reductase
gi|7106075|emb|CAB76046.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Schizosaccharomyces pombe]
Length = 268
Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
N D L L+ GV ++VEGGA + S +D+ ++ +
Sbjct: 158 CIIRNEDSPDSWSDYVALDKLLQNGVNRIMVEGGAELLAKAFGSTDIDAYVVTIVPKIFS 217
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ ++ G DV
Sbjct: 218 CSNT-TEIKNLNNLNLTTNSHWYPCGPDVIFT 248
>gi|312195999|ref|YP_004016060.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311227335|gb|ADP80190.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 201
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 47/208 (22%), Gaps = 9/208 (4%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
S T +++S D + G + A
Sbjct: 1 MSDTTCHMSISLDGFVAGPDQSRQDPLGKRGRELHGWHMGDPRANDADRTATEWLMRPRG 60
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ G P+R + D V
Sbjct: 61 AYVMGRNMFGPIR------GEWDEDWSGWWGPEPPYHAPVFVLTHHRHDPIPMDGGTTFH 114
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ G + + GGA+ + + ++D + L + +++G G
Sbjct: 115 FVTDGFEAAYSAAREAAGGKGVDIAGGASTVRQALTAGVIDELTLDIAPVLLGSGER--- 171
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ +G F + + Y
Sbjct: 172 IFDGVESFGFEPAEVLHSPLTTHIRYRR 199
>gi|239978106|ref|ZP_04700630.1| hypothetical protein SalbJ_01625 [Streptomyces albus J1074]
gi|291450003|ref|ZP_06589393.1| dihydrofolate reductase [Streptomyces albus J1074]
gi|291352952|gb|EFE79854.1| dihydrofolate reductase [Streptomyces albus J1074]
Length = 214
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 1/111 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ V + + D + L + G + +
Sbjct: 89 WRGWWGDEPPFRTPVVVLTHHRRDPLHFDNGTSFHFLDATPEEALARAVELAGGLDVRIG 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
GG F+ + LVD + L + +G G+ +E F
Sbjct: 149 GGPTTIRQFLAADLVDFLHLVTVPLTLGA-GVSLWEGLAGVEDRFTVESVT 198
>gi|229822319|ref|YP_002883845.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229568232|gb|ACQ82083.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 196
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ S + + LVD + ++ G G + +GY + V F G L
Sbjct: 117 GSLSLCRSLLEAGLVDRFRVVMFPVITGRTGSER-IYDGYPDVALELVETRTFDGRTQLL 175
Query: 353 EYIG 356
EY+
Sbjct: 176 EYVP 179
>gi|269796085|ref|YP_003315540.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
gi|269098270|gb|ACZ22706.1| dihydrofolate reductase [Sanguibacter keddieii DSM 10542]
Length = 183
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G +A + + +VD + Y S + +G G P R G + L Y
Sbjct: 122 GPTLAAHALRAGIVDEVHPYVSPVSVGGGLPFWPEGLRLDLDLLDEHRFR--GGALWLRY 179
Query: 355 IGKN 358
+
Sbjct: 180 AVRR 183
>gi|218515740|ref|ZP_03512580.1| probable dihydrofolate reductase protein [Rhizobium etli 8C-3]
Length = 179
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 2/118 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+ D+ P + + + L
Sbjct: 50 RGEWPDDAWKGWWGPNPPYHAPTYILTHYPREPIVMEGGTTFHFITGGIEEALDKAKAAA 109
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG A ++ + LVD + + +V+G G F
Sbjct: 110 GDKDVKIGGGVATVRQYLQAGLVDELHFAVAPVVLG-MGEAMFAGIDLPALGFRVTEH 166
>gi|193083802|gb|ACF09485.1| dCMP deaminase [uncultured marine crenarchaeote KM3-47-D6]
Length = 156
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 29/115 (25%), Gaps = 47/115 (40%)
Query: 11 MSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------------- 53
M A ++ +T V +IV+D I G G P
Sbjct: 1 MLRA-ELAKLRSNCMTRK---VGAVIVRDHRQIATGY---NGTPPGIKNCFEGGCKRCQD 53
Query: 54 ------------------HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRS 85
HAE A+ G + A Y T PC +
Sbjct: 54 RMDGKIESGASLDRCLCSHAEANAIMHCAILGIGTGTKDAILYTTFIPCLECTKM 108
>gi|291301166|ref|YP_003512444.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290570386|gb|ADD43351.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 201
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
L V G A +A S + + LVD++ L + V+G+G P +G V +
Sbjct: 123 RELQVHGSAELAQSLLGAGLVDTLRLVIAPCVVGQGRRLFP--DGGAAAGLRPVSQRM 178
>gi|297191280|ref|ZP_06908678.1| deaminase-reductase domain-containing protein [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718435|gb|EDY62343.1| deaminase-reductase domain-containing protein [Streptomyces
pristinaespiralis ATCC 25486]
Length = 190
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V + + + ++ LVD + L +V+G G K + G
Sbjct: 122 DIVVYASSRLVRTLMDHDLVDEVRLMVHPVVLGAGDR--LFGGTGDMKRLRLLGTRTVGD 179
>gi|312197697|ref|YP_004017758.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311229033|gb|ADP81888.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 181
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V GG +A F ++ L+D++I+ + + +G G
Sbjct: 111 GGKDVWVVGGGDLAGQFADAGLLDAVIVSIAPVTLGAG 148
>gi|296119603|ref|ZP_06838161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
ammoniagenes DSM 20306]
gi|295967486|gb|EFG80753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium
ammoniagenes DSM 20306]
Length = 236
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRD 344
+++ GG + S + L D + L GE S E F +
Sbjct: 158 IILGGGGTLNWSMLRQGLCDELSLVLMPTADGERHTHSLFEANDDFTTPAPYEFALKNVE 217
Query: 345 YFGSD-VCLEY 354
V L Y
Sbjct: 218 ALEDGSVWLRY 228
>gi|153006103|ref|YP_001380428.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152029676|gb|ABS27444.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 204
Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G + + + + L+D L+ +V+G G G + V G
Sbjct: 132 GSTGLLQTLLKNDLIDEYRLFIFPVVLGSG--KRLFGSGTVPVALKQVESVTTGK--RAT 187
Query: 354 YIG 356
Y+
Sbjct: 188 YLR 190
>gi|256824093|ref|YP_003148053.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
gi|256687486|gb|ACV05288.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
Length = 230
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 1/120 (0%)
Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280
+ + + V + + L
Sbjct: 77 KFTPETGPWTDEGWRGWWGEEPPFSTPVFVMTHHPRESMEFANGTVFHFVSGPPAEVLDQ 136
Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
G + + GG SF+ LVD + +V+G G P G L++ F
Sbjct: 137 AKGAAGGLDVRIGGGPTSVRSFLADDLVDVMHTVTVPVVLG-EGTPLWDGLGGLQRRFSI 195
>gi|326778266|ref|ZP_08237531.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|326658599|gb|EGE43445.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 214
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 27/99 (27%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
+ P +F + + D L
Sbjct: 83 PQRGPWEDHAWQGWWGDEPPFHTPVFVMTHHTRPSFTLSDTTFHFVDADPATVLDRAREA 142
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG F+++ L+D++ + + + +G G
Sbjct: 143 ADGKDVRLGGGVTTVREFLDADLIDTLHVAVAPVKLGTG 181
>gi|229197315|ref|ZP_04324045.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
m1293]
gi|228586192|gb|EEK44280.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
m1293]
Length = 181
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G ++ K +
Sbjct: 110 QNLLIYGSGDLTQTLMQHDLIDEYHFIVNPVIVGSG--KRLFKDQSNTKALKLIETRT 165
>gi|328767668|gb|EGF77717.1| hypothetical protein BATDEDRAFT_5464 [Batrachochytrium
dendrobatidis JAM81]
Length = 185
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 15/186 (8%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP---- 205
ITL A + D I + + I+ S H LRA DAILVG+ T++ D+P
Sbjct: 1 PKITLTYAQTFDGFIALP-GQQLAISSPQSMVLTHALRATHDAILVGVQTIICDNPSLST 59
Query: 206 ----ELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKTALLAPVIIVTENDDPVLAL 258
P +ILD H + L++K N L
Sbjct: 60 RFVDYGPPPDRITPPSQPRPVILDSHLRCPLNAKVLSRNPFIFTTTTPSTHSNSWDALIQ 119
Query: 259 AF-RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL--VDSIILYR 315
A + IN D+ L L + S+++EGG+ V +++ + + S+I+
Sbjct: 120 AGAQPITINSDSTHRVDIVSALEYLHSHNIHSVMIEGGSQVIKECLSNPMLPIHSLIVTV 179
Query: 316 SQIVIG 321
S + +G
Sbjct: 180 SPMFLG 185
>gi|229820310|ref|YP_002881836.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229566223|gb|ACQ80074.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 211
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 1/119 (0%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P ++ D K A V + + D + L
Sbjct: 78 HPGWEDDPDWKGAWGANPPFHTPVFVLTHHPRPSIEMEGGTTFHFLDASPAEALEQARKA 137
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GG V F+ + LVD + + I++G G+ LEK +
Sbjct: 138 ADGDDVRIGGGPTVIRDFLAAGLVDYMSVAIVPILLG-RGVRLWDGLEGLEKTYDIESV 195
>gi|320007628|gb|ADW02478.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 207
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G +A + L+D + L + +G G +G F GS + +
Sbjct: 133 GSGTLAQFLLAHGLIDEVNLIVHPVYLGRGRR--LFADGGEPTAFELTGARTTGSGIAIH 190
Query: 354 YIGK 357
Sbjct: 191 TYRP 194
>gi|77918274|ref|YP_356089.1| cytosine/adenosine deaminase [Pelobacter carbinolicus DSM 2380]
gi|77544357|gb|ABA87919.1| cytosine/adenosine deaminase [Pelobacter carbinolicus DSM 2380]
Length = 193
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGC----PHAEVQALEEAG 64
M A+ + ++ S P + + G +I GV HAE+ AL A
Sbjct: 32 MRLAIELAEHNIRHGSGGP-FGAAVFDLDSGRLIAPGVNLVTSTCCSVAHAELVALMLAQ 90
Query: 65 EEA---------RGATAYVTLEPCSHY 82
+ R A + EPC+
Sbjct: 91 KYVGSFSLADAGRNAELTSSTEPCAMC 117
>gi|229156777|ref|ZP_04284864.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus ATCC
4342]
gi|228626697|gb|EEK83437.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus ATCC
4342]
Length = 166
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 95 QNLLIYGSGELIQTLMQHDLIDEYHFMVNPVIVGRG--KRLFKTGNDTKALKLIETRT 150
>gi|85001518|ref|XP_955475.1| cytidine and deoxycytidylate deaminase family protein [Theileria
annulata strain Ankara]
gi|65303621|emb|CAI75999.1| cytidine and deoxycytidylate deaminase family protein, putative
[Theileria annulata]
Length = 183
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 25/96 (26%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQALEEA 63
FM AL ++ + +VAC+IV V+ A Y H E++A+ +
Sbjct: 12 FMKLALEEAKKALDK--EEIAVACIIVSKATREVVASSSNATNLTYNSTWHCELEAINKL 69
Query: 64 -------------GEEAR----GATAYVTLEPCSHY 82
E+ R G +VT EPC
Sbjct: 70 IDMEPNGYKSEQDSEKLREFCSGFALFVTCEPCIMC 105
>gi|227823191|ref|YP_002827163.1| bifunctional deaminase-reductase-like protein [Sinorhizobium fredii
NGR234]
gi|227342192|gb|ACP26410.1| bifunctional deaminase-reductase-like protein [Sinorhizobium fredii
NGR234]
Length = 181
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFGS 348
+ + G A A + I LVD L + +++G+G +PL + E+ S
Sbjct: 113 IFIFGSADFAATLIARGLVDEYRLGINPVLLGKG---TPLFQNIPERTKLELTHVRPLNS 169
Query: 349 D-VCLEYIG 356
V L Y
Sbjct: 170 GVVILHYRP 178
>gi|159036852|ref|YP_001536105.1| deaminase-reductase domain-containing protein [Salinispora
arenicola CNS-205]
gi|157915687|gb|ABV97114.1| bifunctional deaminase-reductase domain protein [Salinispora
arenicola CNS-205]
Length = 221
Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + PV +VT + L + + R V +
Sbjct: 99 QAWPEEAPFHTPVFVVTHQRRDPWERPGGTTFHFVNDGIHSALGQARDVAGDRDVR---I 155
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
GG+ +++N+ LVD + S ++ G G +R +
Sbjct: 156 SGGSTTILAYLNAGLVDEFSIALSPVLFGA-GTRLFDGVDASRVALEPIRSE 206
>gi|332524984|ref|ZP_08401168.1| cmp/dcmp deaminase zinc-binding protein [Rubrivivax
benzoatilyticus JA2]
gi|332108277|gb|EGJ09501.1| cmp/dcmp deaminase zinc-binding protein [Rubrivivax
benzoatilyticus JA2]
Length = 161
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCP--H 54
M + D ++ A + + ++V V+ H
Sbjct: 1 MTTPAPDRLLAWLRRANEVAARALAEGR--HPFGAVLVGPDGDTVLLE---QGNVSAVEH 55
Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
AE EA G T T+EPC+
Sbjct: 56 AEAVLAREAARRWAPEFLAGCTLVTTVEPCAMC 88
>gi|260463212|ref|ZP_05811414.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259031062|gb|EEW32336.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 178
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V+GG V SF+ L+D + + R I++G G
Sbjct: 107 EGCRHVYVDGGL-VIQSFLQLGLIDDMTITRVPILLGSG 144
>gi|289766953|ref|ZP_06526331.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
gi|289697152|gb|EFD64581.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
Length = 193
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ G L G + S + + LVD + ++ G G ++ Y +
Sbjct: 105 RDMKRHGTRPLRTLGSLTLCRSLLRAGLVDRFRVVVFPVITGATGRERIFDQ-YPDVTLD 163
Query: 340 CVRRDYFGSDV-CLEYIG 356
V F + LEY+
Sbjct: 164 LVASRTFDGRLQLLEYVP 181
>gi|289168536|ref|YP_003446805.1| hypothetical protein smi_1703 [Streptococcus mitis B6]
gi|288908103|emb|CBJ22943.1| hypothetical protein smi_1703 [Streptococcus mitis B6]
gi|313575397|emb|CBR26926.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
Length = 73
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYFG-SDVCL 352
G + + + + L+D I L S +G EK N + + L
Sbjct: 6 GGGLTNKLLENGLIDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSL 65
Query: 353 EYIGKN 358
Y KN
Sbjct: 66 RYAVKN 71
>gi|256783071|ref|ZP_05521502.1| hypothetical protein SlivT_01120 [Streptomyces lividans TK24]
Length = 189
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ G L G + S + + LVD + ++ G G ++ Y +
Sbjct: 101 RDMKRHGTRPLRTLGSLTLCRSLLRAGLVDRFRVVVFPVITGATGRERIFDQ-YPDVTLD 159
Query: 340 CVRRDYFGSDV-CLEYIG 356
V F + LEY+
Sbjct: 160 LVASRTFDGRLQLLEYVP 177
>gi|197124403|ref|YP_002136354.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
gi|196174252|gb|ACG75225.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
Length = 220
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 39/153 (25%)
Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
+ + ++H A + G V D + G
Sbjct: 36 HKWVLDTRTFQRMHGDGAGTPGAEAGRRGVDDDLAARSFENVGAWILGRNMFAPSRGPWP 95
Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
K + V + + L G +
Sbjct: 96 DDGWKGWWGENPVYHVPVFVLTHHARPPLEMQGGTTFHFVTDGIHAALERAKDAAGGKDV 155
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ GG A ++ +RLVD I L S +++G G
Sbjct: 156 RLGGGVATVREYLAARLVDEIHLAISPVLLGRG 188
>gi|302556663|ref|ZP_07309005.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
gi|302474281|gb|EFL37374.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
Length = 215
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 31/142 (21%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ G L D N E
Sbjct: 41 WAGATASWPMRTDPGGSRGLDDYLTRDYTHNIGAEIMGRNKFGPQRGPWENHEWRGWWGD 100
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
P +F + + L + + GG
Sbjct: 101 EPPFHTPVFVMTHHERPSFTLSDTTFHFVAGDPATILEQAREAAQGKDVRLGGGVTTIRQ 160
Query: 302 FINSRLVDSIILYRSQIVIGEG 323
F+++ LVD++ + S + +G G
Sbjct: 161 FLDADLVDTMHVAVSPVKLGSG 182
>gi|261407073|ref|YP_003243314.1| bifunctional deaminase-reductase domain-containing protein
[Paenibacillus sp. Y412MC10]
gi|261283536|gb|ACX65507.1| bifunctional deaminase-reductase domain protein [Paenibacillus sp.
Y412MC10]
Length = 187
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GG +A + + L+D L + IV+G G P L + +F
Sbjct: 125 GGPELAGEAMRAGLIDECHLLLNPIVLGGGKRALP---DNLCMRLELLGERHF 174
>gi|16263176|ref|NP_435969.1| hypothetical protein SMa1326 [Sinorhizobium meliloti 1021]
gi|307305101|ref|ZP_07584850.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
gi|307318219|ref|ZP_07597655.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|14523842|gb|AAK65381.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306896260|gb|EFN27010.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|306902441|gb|EFN33036.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
Length = 215
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
S P V + + + L
Sbjct: 84 RGPWPDQSWRGWWGENPPYHCPVFVLTNHARPSLQMEGGTVFHFITDGIEAALARAREAA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GG+A ++N+RLVD + + S I++G G
Sbjct: 144 DGRDVRLGGGSATVRQYLNARLVDEMHIAISPILLGSGEA 183
>gi|320012745|gb|ADW07595.1| bifunctional deaminase-reductase domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 214
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 25/101 (24%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
P +F + + D L
Sbjct: 81 FAPHRGPWQDHGWRGWWGDEPPFRTPVYVMTHHTRPSFTLADTTFHFVDADPATVLDRAR 140
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG F+ + LVD++ + S + +G G
Sbjct: 141 EAAQGKDVRLGGGVTTIRQFLEADLVDTLHVAVSPVELGSG 181
>gi|302551564|ref|ZP_07303906.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
gi|302469182|gb|EFL32275.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
Length = 215
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 35/148 (23%), Gaps = 1/148 (0%)
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ + G L D N E
Sbjct: 37 MFAWAGATASWPNRTDPGGSRGLDDYLVRDFHHNIGAEIMGRNKFSPQRGPWQDHEWQGW 96
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P +F + + + L + + GGA V
Sbjct: 97 WGDEPPFHTPVFVMTHHERPSFTLSDTTFHFVGGTPAEVLALAREAAQGKDVRLGGGATV 156
Query: 299 AHSFINSRLVDSIILYRSQ-IVIGEGGI 325
F+++ LVD++ + S + +G G
Sbjct: 157 IRQFLDADLVDTLHVAVSPGVKLGSGSR 184
>gi|255101990|ref|ZP_05330967.1| hypothetical protein CdifQCD-6_14336 [Clostridium difficile
QCD-63q42]
gi|255307858|ref|ZP_05352029.1| hypothetical protein CdifA_14811 [Clostridium difficile ATCC 43255]
gi|328887750|emb|CCA62883.1| conserved hypothetical protein [Clostridium difficile]
Length = 55
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ L+D +Y I++G G S + G + N + G V LEY K
Sbjct: 1 MKDNLIDDYYIYILPIILGRG--ISLFKSGIDKTNLNFKKASNIGELVKLEYSKK 53
>gi|33865610|ref|NP_897169.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. WH 8102]
gi|33632780|emb|CAE07591.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. WH 8102]
Length = 157
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAY----GGCPHAEVQALEEA 63
+M + +R V S VA +I+ + G IG G HAE+ AL +A
Sbjct: 9 EWME--VLLARASVNGDSGEVPVAAVILDEQGRCIGHGRNRRERCQDPLGHAELVALSQA 66
Query: 64 G-----EEARGATAYVTLEPCSHY 82
T VTLEPC
Sbjct: 67 ATIRGDWRFNPCTLLVTLEPCPMC 90
>gi|254498278|ref|ZP_05111019.1| hypothetical protein LDG_2700 [Legionella drancourtii LLAP12]
gi|254352496|gb|EET11290.1| hypothetical protein LDG_2700 [Legionella drancourtii LLAP12]
Length = 176
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
+ + GGA +A SF L++ +IL +G GIP L + F
Sbjct: 109 KDIWLLGGAELAKSFAQEGLLNEVILTIIPQTLG-EGIPLGLTF----EKFDLTAEKALT 163
Query: 347 GSDVCLEYIGKN 358
+ Y KN
Sbjct: 164 DGMMQKIYSRKN 175
>gi|120405593|ref|YP_955422.1| deaminase-reductase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119958411|gb|ABM15416.1| bifunctional deaminase-reductase domain protein [Mycobacterium
vanbaalenii PYR-1]
Length = 199
Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G +V + + LVD + L I + +G L + + + F + V L
Sbjct: 123 GSPSVVRQLLQAGLVDELHLLVHPIAVRKGAR---LFDEGTPIPLKLLTSNTFDTGVVHL 179
Query: 353 EYIGKN 358
Y +
Sbjct: 180 VYTRDD 185
>gi|254883694|ref|ZP_05256404.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319642762|ref|ZP_07997403.1| hypothetical protein HMPREF9011_03003 [Bacteroides sp. 3_1_40A]
gi|254836487|gb|EET16796.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317385617|gb|EFV66555.1| hypothetical protein HMPREF9011_03003 [Bacteroides sp. 3_1_40A]
Length = 165
Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ ++ + L G+G+ ++V GG ++F++ LV I + +VIG+GG+
Sbjct: 79 HKTVHTPEEAVEYLKGKGMEEIVVGGGVQTYNAFLDKDLVTDIYFNVTPMVIGDGGVIGS 138
Query: 329 LEEGYLEKNFMCVRRDYFGSDVC 351
++ +++ F + + +V
Sbjct: 139 KDDLFVK--FDKMNYEPIIENVI 159
>gi|90419974|ref|ZP_01227883.1| cytidine/deoxycytidylate deaminase [Aurantimonas manganoxydans
SI85-9A1]
gi|90336015|gb|EAS49763.1| cytidine/deoxycytidylate deaminase [Aurantimonas manganoxydans
SI85-9A1]
Length = 202
Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 30 SVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCS 80
V +IV+ +I RG HAE+ A+ A E YVTLEPC+
Sbjct: 77 PVGAVIVRGDEIIARGGNETRQRNDPTAHAEIVAIRAAAARLGSERLPDCDLYVTLEPCA 136
Query: 81 HY 82
Sbjct: 137 MC 138
>gi|284029173|ref|YP_003379104.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283808466|gb|ADB30305.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 209
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
L V G + S +LVD IIL +V+G+G P V +
Sbjct: 130 DLQVHGSGRLVRSLFAEQLVDEIILLTYPVVVGQGTRLFPAAGPDTA--LELVESQVTAN 187
Query: 349 DVCLEYIGKNLCLQ 362
+ ++ + Q
Sbjct: 188 GITIQLYRPSGRPQ 201
>gi|113867822|ref|YP_726311.1| dihydrofolate reductase [Ralstonia eutropha H16]
gi|113526598|emb|CAJ92943.1| dihydrofolate reductase [Ralstonia eutropha H16]
Length = 178
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+ ++ L G+ + V+GG + SF+ L+ +++ ++IG G S
Sbjct: 92 FSDCTPTETMSQLEAAGMRRVYVDGG-QLVQSFLREGLIADLVVTTVPVLIGAG--RSLF 148
Query: 330 EEGYLEKNFMCVRRDYF 346
+ + F
Sbjct: 149 GALPRDVSLALESSRLF 165
>gi|76160949|gb|ABA40438.1| unknown [Solanum tuberosum]
Length = 186
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTQAVEEAYKGV-ECGDGGPFGAVVVCNNEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V A+ EA ++ Y + EPC
Sbjct: 84 VTAVREACKKLNRIELADCEIYASCEPCPMC 114
>gi|332879019|ref|ZP_08446731.1| riboflavin biosynthesis protein RibD protein [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332683032|gb|EGJ55917.1| riboflavin biosynthesis protein RibD protein [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 172
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ ++ + + + + L + + T +L+
Sbjct: 48 ANTYNYIFEHWGGWPHKSRRSFVVSHYDTNVTPDCGVEFLTEEPLQRVYELKQETDMLMV 107
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG + S I + L+DS+ +Y +++G+G L + + +
Sbjct: 108 GGGRLLTSLIKAELLDSLTIYTVPVMVGKG---IGFIGETLGSQWKLSESGVLDNGVIRS 164
Query: 353 EYIGK 357
Y+
Sbjct: 165 TYLFD 169
>gi|296118671|ref|ZP_06837247.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295968160|gb|EFG81409.1| riboflavin biosynthesis protein RibD protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 194
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LLV G A + + L+D L +++G G E ++ + ++ +
Sbjct: 126 LLVHGSATLVKALQERGLIDRYHLLVFPVLLGA-GKRMFSEADLPAQHLVLEDHAHYSNG 184
Query: 350 V-CLEYIGKN 358
+ L Y K
Sbjct: 185 IQKLVYRVKK 194
>gi|226506666|ref|NP_001147339.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
gi|195610278|gb|ACG26969.1| cytidine/deoxycytidylate deaminase family protein [Zea mays]
Length = 184
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 50 GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAEV A+ +A ++ G Y + EPC
Sbjct: 76 DPSAHAEVTAIRQACKKLGKTSLSGCEIYTSCEPCPMC 113
>gi|158339718|ref|YP_001520725.1| riboflavin biosynthesis protein RibD domain-containing protein
[Acaryochloris marina MBIC11017]
gi|158309959|gb|ABW31575.1| riboflavin biosynthesis protein RibD C-terminus domain protein
[Acaryochloris marina MBIC11017]
Length = 191
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG +A + LVD +IL + ++ GIP + + +
Sbjct: 125 IWLCGGGDLATTLFAHHLVDQLILKINPFLMVS-GIPLF-SGVIQQTALELTDHKIYENG 182
Query: 350 VCLEYIG 356
V L Y
Sbjct: 183 VLLLYYR 189
>gi|156087547|ref|XP_001611180.1| cytosine deaminase [Babesia bovis T2Bo]
gi|154798434|gb|EDO07612.1| cytosine deaminase, putative [Babesia bovis]
Length = 191
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 13/123 (10%)
Query: 10 FMSAALRFSRWH--VGLTSTNPSVACLIVKDGI--VIGRGVTA----YGGCPHAEVQALE 61
FM+AAL +R G + V C+IV ++ R + + H E A++
Sbjct: 10 FMTAALDEARDALERGEVA----VGCVIVDKEKKTIVARAGNSTNQKHNSTWHCEFGAID 65
Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
+ + + A F+ + + G
Sbjct: 66 TLFSLVPDGKI-GANDQANIQAFTSRYALFVTCEPCIMCATALHIVGLTDIYYGCDNEKF 124
Query: 122 KGI 124
G
Sbjct: 125 GGC 127
>gi|86159616|ref|YP_466401.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776127|gb|ABC82964.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 182
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 7/134 (5%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +K + + + F N +++ D + K L
Sbjct: 55 WPQVARDPKAKPADRSWARKLEAKPKYVVSTTRRDFPWSNTHLVEGDLKRKVKALKKATP 114
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG+ LV G ++ + LVD +V G G P V
Sbjct: 115 RGI---LV-GSPQLSAALQRLDLVDEYRFVVHPVVAGHG--PYLFSGLQDSARLKLVAAR 168
Query: 345 YFGSDVC-LEYIGK 357
S + L Y +
Sbjct: 169 RLRSGIVALHYRRR 182
>gi|302679520|ref|XP_003029442.1| hypothetical protein SCHCODRAFT_78305 [Schizophyllum commune
H4-8]
gi|300103132|gb|EFI94539.1| hypothetical protein SCHCODRAFT_78305 [Schizophyllum commune
H4-8]
Length = 158
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 14/90 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAY----GGCPHAE 56
DA M A + + +V+ +I G H E
Sbjct: 7 DRDALGMQRAFEEADAGAKEGGI--PIGSALVQHDDSGDHLIASGRNLRIQKGSATLHGE 64
Query: 57 VQALEEAGEEARG----ATAYVTLEPCSHY 82
+ LE AG G T Y TL PC
Sbjct: 65 ICCLETAGRLKAGVYRKCTIYTTLSPCIMC 94
>gi|312195295|ref|YP_004015356.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311226631|gb|ADP79486.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 206
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 2/118 (1%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRG 286
K ++ AP + ++ + L G
Sbjct: 75 GKRMFEAGEHAWPPEAPFHTPVFVVTHEKRDPWERQGGTTFHFVNDGIEAALDRAREAAG 134
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ + GG A ++N+ L+D + S ++ G GI V
Sbjct: 135 DRDVRIAGGGATILEYLNAGLIDEFTIALSPVLFGS-GIRLFEGVDAGRVALELVGTQ 191
>gi|229820577|ref|YP_002882103.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229566490|gb|ACQ80341.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 201
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
G + + LVD + L +++G G P L V F
Sbjct: 131 GSGRLIRWLLEHDLVDEVNLLVCPVIVGAGTRLFPESGPDLA--LQLVESRSF 181
>gi|149181584|ref|ZP_01860078.1| cytidine/deoxycytidylate deaminase/nudix/methyltransferase
domains protein [Bacillus sp. SG-1]
gi|148850698|gb|EDL64854.1| cytidine/deoxycytidylate deaminase/nudix/methyltransferase
domains protein [Bacillus sp. SG-1]
Length = 217
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 20/89 (22%)
Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG------GC------PHAEVQ 58
+ S + I +G VI G G HAE+
Sbjct: 10 KECFEQAWNSYCSGSF--PIGAAITDENGDVISIGRNKVYEKVIEEGQVCNNKIAHAEIN 67
Query: 59 ALEEAGE-----EARGATAYVTLEPCSHY 82
A+ + + + Y T+EPC+
Sbjct: 68 AILKINNLETNTNRKKYSIYSTMEPCALC 96
>gi|71018329|ref|XP_759395.1| hypothetical protein UM03248.1 [Ustilago maydis 521]
gi|46099120|gb|EAK84353.1| hypothetical protein UM03248.1 [Ustilago maydis 521]
Length = 562
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 12/103 (11%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65
+D F+ S + V ++V ++ G G P L +
Sbjct: 218 WDTYFLKLCNLASLRSNCMKR---RVGAVLVSSNRILATGY---NGTP----SGLRNCNQ 267
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
G P S +P + + + +
Sbjct: 268 G--GCARCNNTLPTSTSTNTPRAGSSACGQNLDECLCLHAEEN 308
>gi|288919601|ref|ZP_06413930.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288348999|gb|EFC83247.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 187
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V G A + S ++ LVD L +++G G + V +G+
Sbjct: 119 IAVHGSATLGASLADAGLVDRYHLLVFPVLLGA-GRRLFSAADKDKTMLKLVEFAAYGN 176
>gi|297195654|ref|ZP_06913052.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
gi|197719003|gb|EDY62911.1| dihydrofolate reductase [Streptomyces pristinaespiralis ATCC 25486]
Length = 192
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G G+ P+ +G + + + + L
Sbjct: 126 GSLSMNRALMAAGLVDRVQVTLFPVITGRSGLD-PIFQGAADFDLELIDHRTLDGHIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 VYRP 188
>gi|251778313|ref|ZP_04821233.1| dCMP deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082628|gb|EES48518.1| dCMP deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 164
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 29/126 (23%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP------ 53
M + ++ A L +IVK+ +I G T G
Sbjct: 1 MERIIKENYYLDIAETVLERGTCLRRNY---GSIIVKNDEIISTGYTGAPRGRNNCIDIN 57
Query: 54 ---------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQF 91
H+E A+ A GAT Y+
Sbjct: 58 SCIREKLQVPRGTHYELCRSVHSEANAIISASRRDMIGATLYLVGRDAKTREYVENANSC 117
Query: 92 IIECGI 97
+ +
Sbjct: 118 SMCKRL 123
>gi|21225889|ref|NP_631668.1| hypothetical protein SCO7627 [Streptomyces coelicolor A3(2)]
gi|11322416|emb|CAC16729.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 193
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ G L G + S + + LVD + ++ G G ++ Y +
Sbjct: 105 RDMKRHGTRPLRTLGSLTLCRSLLRAGLVDRFRVVVFPVITGATGRERIFDQ-YPDVTLD 163
Query: 340 CVRRDYFGSDV-CLEYIG 356
V F + LEY+
Sbjct: 164 LVGSRTFDGRLQLLEYVP 181
>gi|242043474|ref|XP_002459608.1| hypothetical protein SORBIDRAFT_02g007460 [Sorghum bicolor]
gi|241922985|gb|EER96129.1| hypothetical protein SORBIDRAFT_02g007460 [Sorghum bicolor]
Length = 186
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V P ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGVDNGDGGP-FGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ Y + EPC + + + D
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDF 143
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 144 IADALRGTGFYQKANMEI 161
>gi|296812509|ref|XP_002846592.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238841848|gb|EEQ31510.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 233
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI------VKDG-----IVIGRGVT-A 48
M S ++S L + TN V ++ D ++ G T
Sbjct: 6 MVPLSTHLHYLSQCLELASQSPPK-PTNFRVGAILLLRRYPTSDDAELKEEILSTGYTLE 64
Query: 49 YGGCPHAEVQALEE 62
G HAE +
Sbjct: 65 LRGNTHAEQCCFAK 78
>gi|282599202|ref|YP_003358514.1| Cd allosteric enzyme [Shigella phage phiSboM-AG3]
gi|226973508|gb|ACO94261.1| Cd allosteric enzyme [Shigella phage phiSboM-AG3]
Length = 168
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 36/147 (24%), Gaps = 35/147 (23%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCP-------------- 53
M +A ++ V C+IV + G
Sbjct: 11 HMRSAHAYALSSYAQRLK---VGCVIVDPRVDQPLSIGWNGTAPGAPNVCEQEVDGQLVS 67
Query: 54 ----HAEVQALEEAGEEARGAT---AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106
HAE AL + + +VT PC R + I +
Sbjct: 68 VGVIHAEENALSKLPQHTEDCCGLVMFVTHSPCPECTRRIIDSGKIAKV---------FY 118
Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESE 133
G+ + GI V RM
Sbjct: 119 DRPYRITDGIIEMLAAGIEVYRMCYQH 145
>gi|58261492|ref|XP_568156.1| hypothetical protein CNL06320 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230238|gb|AAW46639.1| hypothetical protein CNL06320 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 209
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D +M ++ + N +IV + ++ G + H EV
Sbjct: 35 EVDLHWMRKSIEV----MPPCHFNAY-GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89
Query: 59 ALEEAGEEARGATAYVTLEPCSHYG 83
A+ E + Y T EPC G
Sbjct: 90 AIR-ITEIWPQSWIYTTAEPCPMCG 113
>gi|114765713|ref|ZP_01444811.1| putative deaminase [Pelagibaca bermudensis HTCC2601]
gi|114541930|gb|EAU44965.1| putative deaminase [Roseovarius sp. HTCC2601]
Length = 152
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE---- 65
A+ + P +++ V+ HAE+ A+E A
Sbjct: 13 AVIAAALARFSPGEGPVFTAAVLRGDEVLALSANEVSERCDASRHAEIVAIETASRKLGS 72
Query: 66 -EARGATAYVTLEPCSHY 82
+ G T +++PC
Sbjct: 73 TKLDGCTLIASMQPCEMC 90
>gi|333030802|ref|ZP_08458863.1| bifunctional deaminase-reductase domain protein [Bacteroides
coprosuis DSM 18011]
gi|332741399|gb|EGJ71881.1| bifunctional deaminase-reductase domain protein [Bacteroides
coprosuis DSM 18011]
Length = 178
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259
L + P G QE L K + P +N +
Sbjct: 25 WLENFPNPKETDYGYQEFYEKVDTLIMGGKTYRHILDMCDKWPYP----EKNTYIISHQP 80
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319
I Y L+++ I +G + + GG +A +N+ L+D++I+ ++
Sbjct: 81 IESNKRGIHYLGENWLEEIKFIKDQKG-QDIWLVGGGEIASEMLNAGLIDTMIITEFPVL 139
Query: 320 IGEG 323
+G G
Sbjct: 140 LGNG 143
>gi|256424154|ref|YP_003124807.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
gi|256039062|gb|ACU62606.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
Length = 219
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
LLV G + + + + RL+D + ++ I +G+G +EG + + V
Sbjct: 126 LLVHGSSRLVQTLLAERLIDELHMWIHPITLGKG--KQLFQEGTRPQQWKLVET 177
>gi|329934276|ref|ZP_08284355.1| bifunctional deaminase-reductase domain protein [Streptomyces
griseoaurantiacus M045]
gi|329305872|gb|EGG49727.1| bifunctional deaminase-reductase domain protein [Streptomyces
griseoaurantiacus M045]
Length = 203
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ + + + V A K +
Sbjct: 62 YVMGRNMFGPVRGEWNETWEGWWGPEPPYHAPVFVLTHYAHAPITMKGGTTFHFVTEGFD 121
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L + + GGA+ +N+ ++D + L + +++G G L +G
Sbjct: 122 AAYAQALEAAEGNGVDIAGGASTVRQALNAGVIDELTLDIAPVLLGSGER---LFDGVET 178
Query: 336 KNFMCVRR 343
F V
Sbjct: 179 FGFEPVEV 186
>gi|86160330|ref|YP_467115.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776841|gb|ABC83678.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 221
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 36/155 (23%)
Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228
S+ ++ + + G V D + G
Sbjct: 32 GMSLHEWVLDTRTFRRMHAGGAAGADEGRRGVDDDLAARSFENVGAWILGRNMFAPSRGP 91
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
K + V + + L
Sbjct: 92 WTDDGWKGWWGENPVYHVPVFVLTHHARPPLEMQGGTTFHFVTEGIHAALDRAKEAARGK 151
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG A ++ + LVD + L S +++G G
Sbjct: 152 DVRLGGGVATVREYLAAGLVDELHLAISPVLLGRG 186
>gi|159184669|ref|NP_354231.2| DNA-binding protein [Agrobacterium tumefaciens str. C58]
gi|159139964|gb|AAK87016.2| DNA-binding protein [Agrobacterium tumefaciens str. C58]
Length = 214
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 30/121 (24%)
Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
+ E + G K + V K
Sbjct: 61 NFSEKSFENIGAWVLGRNMFGPVRGAWPDESWKGWWGEEPPYHVPVFVLTHHARPSFTMK 120
Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ L L + + GG + ++ + ++D + L + + +G+
Sbjct: 121 GGTEFHFVTDGIEAALDRALTAANGKDVRIGGGVSTIRQYMAAGMIDELHLALAPVFLGK 180
Query: 323 G 323
G
Sbjct: 181 G 181
>gi|319948586|ref|ZP_08022713.1| riboflavin biosynthesis protein RibD domain-containing protein
[Dietzia cinnamea P4]
gi|319437752|gb|EFV92745.1| riboflavin biosynthesis protein RibD domain-containing protein
[Dietzia cinnamea P4]
Length = 187
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLE 353
G A I + +V + + V+G G P + + FG V L
Sbjct: 127 GPTTAAEAIRAGMVSDFLFFVVPKVVGGGLRALP---PDARLDLELAEQRVFGGGTVLLH 183
Query: 354 YI 355
Y
Sbjct: 184 YR 185
>gi|218199364|gb|EEC81791.1| hypothetical protein OsI_25504 [Oryza sativa Indica Group]
gi|222636744|gb|EEE66876.1| hypothetical protein OsJ_23692 [Oryza sativa Japonica Group]
Length = 186
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F++ A+ + V ++V +V+ HAE
Sbjct: 29 DRDHKFLTKAVEEAYRGV-DCGDGGPFGAVVVRNDEVVVSCHNMVL----KHTDPTAHAE 83
Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ Y + EPC + + + D
Sbjct: 84 VTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAIAIGFDDF 143
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 144 IADALRGTGFYQKANMEI 161
>gi|237651485|ref|YP_002898956.1| putative deoxycytidylate deaminase [Roseophage EE36P1]
gi|220898117|gb|ACL81374.1| hypothetical protein [Sulfitobacter phage EE36phi1]
Length = 142
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 26/95 (27%)
Query: 14 ALRFSRW-HVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP------------------ 53
AL + + V +I++ D + G G P
Sbjct: 9 ALGLAEAVSKRSRDPSTKVGAVIIRPDKTIASMGY---NGFPRTMEDKEEWWSDRPQKYS 65
Query: 54 ---HAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
H E+ AL A E T Y T C H +
Sbjct: 66 RVIHGEMNALLNAKEPVLAMTLYCTHPCCEHCAKH 100
>gi|298249118|ref|ZP_06972922.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297547122|gb|EFH80989.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 192
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + G A + HS + S L+D I++G G +EG + +
Sbjct: 115 QDIRIAGSATLVHSLMPSGLIDEYRFLVHPILMGNG--KRFFKEGKGASRLQLIHTETLS 172
Query: 348 SDVCL 352
V L
Sbjct: 173 KGVVL 177
>gi|297199965|ref|ZP_06917362.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|297147543|gb|EDY54471.2| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 226
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L G ++ + GGA ++ L+D + L+ ++G+G
Sbjct: 148 ALAQAREAAGDRNVDIAGGARTVRQYLREGLIDELQLHVVPALLGDG 194
>gi|294084707|ref|YP_003551465.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664280|gb|ADE39381.1| CMP/dCMP deaminase, zinc-binding protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 149
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTA--YGGCP--HAEVQALEEA-----GEEARGATAYVTLEPC 79
VA IV DG V+ G HAE+ A+ A G G +VTLEPC
Sbjct: 24 PVAAAIVAPDGTVVALESNRMVRDGNALHHAEILAINAALAKTGGSRLDGYDLWVTLEPC 83
Query: 80 SHY 82
+
Sbjct: 84 AMC 86
>gi|255513757|gb|EET90022.1| CMP/dCMP deaminase zinc-binding [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 188
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59
+F+ + +R S +IV +G V+G G EV A
Sbjct: 16 EKFIPECVSLARKSDCNESNY---GAVIVYEGKVVGSGYNHIP-----EVLA 59
>gi|42521861|ref|NP_967241.1| cytosine deaminase [Bdellovibrio bacteriovorus HD100]
gi|39574391|emb|CAE77895.1| Cytosine deaminase [Bdellovibrio bacteriovorus HD100]
Length = 313
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56
M + D ++M + VA ++V +I + HAE
Sbjct: 1 MNTPAHDEKWMRK--ALALARKAAEREEVPVAAIVVGPEGMISYAINTRERQQSPLGHAE 58
Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHY 82
+ AL +A + T YVTLEPC
Sbjct: 59 LLALHKASQKRGSWRLSDCTLYVTLEPCVMC 89
>gi|258510414|ref|YP_003183848.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477140|gb|ACV57459.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 522
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60
+ DA + ALRF+ V +N ++V + +G G AE+ AL
Sbjct: 402 KRTPTDAEY--EALRFAWRAVQFVKSN----AIVVAERDKTLGIGAGQMNRVGAAEI-AL 454
Query: 61 EEAGEEARGATA 72
++AG A+GA
Sbjct: 455 KQAGARAKGAVL 466
>gi|227538660|ref|ZP_03968709.1| hypothetical protein HMPREF0765_2904 [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241579|gb|EEI91594.1| hypothetical protein HMPREF0765_2904 [Sphingobacterium
spiritivorum ATCC 33300]
Length = 54
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI 40
D +M AAL ++ + +IV G
Sbjct: 15 DEFYMKAALTLAKKAYEE--DEVPIGAVIVSQGK 46
>gi|220912531|ref|YP_002487840.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
gi|219859409|gb|ACL39751.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 209
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G + S + + LVD L ++ G G + +GY + V F + L
Sbjct: 137 GSLRLTRSLLAAGLVDRFRLVVFPVITGATGRER-IYDGYPDVMLEMVESKTFDGRLQLL 195
Query: 353 EYIG 356
EY+
Sbjct: 196 EYVP 199
>gi|209364139|ref|YP_001424993.2| guanine deaminase [Coxiella burnetii Dugway 5J108-111]
gi|207082072|gb|ABS77888.2| guanine deaminase [Coxiella burnetii Dugway 5J108-111]
Length = 298
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 37/107 (34%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV----KDGIVI--------GRGVTAYGGCPHAE 56
++ A + L S P +IV K G V HAE
Sbjct: 125 KWAKLANEEALKSAKLGS--PPFGAVIVQIDDKSGRVFRYWVDHNHSVDWHDP--TAHAE 180
Query: 57 VQALEEAGEEAR---------------------GATAYVTLEPCSHY 82
+ + +A E Y + EPC
Sbjct: 181 MSVIRKAARELNVTDLGHIRKEDSKLSQPSEWSHCVIYSSAEPCPMC 227
>gi|108800303|ref|YP_640500.1| DNA-binding protein [Mycobacterium sp. MCS]
gi|119869431|ref|YP_939383.1| DNA-binding protein [Mycobacterium sp. KMS]
gi|126435926|ref|YP_001071617.1| DNA-binding protein [Mycobacterium sp. JLS]
gi|108770722|gb|ABG09444.1| DNA-binding protein [Mycobacterium sp. MCS]
gi|119695520|gb|ABL92593.1| DNA-binding protein [Mycobacterium sp. KMS]
gi|126235726|gb|ABN99126.1| DNA-binding protein [Mycobacterium sp. JLS]
Length = 216
Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 28/103 (27%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
P +F + + D L
Sbjct: 92 FSPHRGPWRDHEWQGWWGDEPPFHTPVFVMTHHPRPSFTLSDTTFHFVDDAPAAVLEQAR 151
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GGA V F+++ LVD++ + S + IG G
Sbjct: 152 EAAQGRDVRLGGGATVIRQFLDAGLVDTLHVAVSDVRIGRGSR 194
>gi|300789168|ref|YP_003769459.1| pyrimidine reductase [Amycolatopsis mediterranei U32]
gi|299798682|gb|ADJ49057.1| pyrimidine reductase [Amycolatopsis mediterranei U32]
Length = 191
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L +L+ G + S +++ LVD + L +V+G G EG
Sbjct: 110 KKLKEEDGQDILMYGSVTLMRSLLHNGLVDQLDLMVCPVVLGTGQR--LFGEGGPALELE 167
Query: 340 CVRRDYFGSDV-CLEYIGK 357
+ + L Y +
Sbjct: 168 LTGHTRLDTGIAILSYHPQ 186
>gi|281210887|gb|EFA85053.1| hypothetical protein PPL_02049 [Polysphondylium pallidum PN500]
Length = 234
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 7 DARFMSAA--LRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALE 61
++M A L ++ + T +IV +G V G+ H E+ A+
Sbjct: 46 HEKYMQIAYDLAVAKKSIFTT--------VIVAPNGTVACTGLNQNEKSAIYHGEIVAIL 97
Query: 62 EAGEEA-----RGATAYVTLEPCSHYGRSPP 87
G + Y T E C+ +
Sbjct: 98 NCSAIYNKNTWEGYSLYTTGESCAMCQAAAM 128
>gi|148271718|ref|YP_001221279.1| putative cytosine/adenosine deaminase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829648|emb|CAN00564.1| putative cytosine/adenosine deaminase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 149
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG-- 64
M+ AL + T P A ++ DG+VIGRG HAEV+AL EA
Sbjct: 1 MAVALDEA-RACAATGDVPVGAVVVDADGVVIGRGRNLREARQDPTAHAEVEALREAAAV 59
Query: 65 ---EEARGATAYVTLEPCSHY 82
G T VTLEPC
Sbjct: 60 TGDRHLVGTTLVVTLEPCVMC 80
>gi|217960611|ref|YP_002339175.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus AH187]
gi|229139812|ref|ZP_04268379.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-ST26]
gi|217064241|gb|ACJ78491.1| riboflavin biosynthesis protein RibD C- domain protein [Bacillus
cereus AH187]
gi|228643692|gb|EEK99956.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
BDRD-ST26]
Length = 181
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+LL+ G + + + L+D + +++G G + G K +
Sbjct: 110 QNLLIYGSGDLTQTLMQHDLIDEYHFIVNPVIVGSG--KRLFKTGNDTKALKLIET 163
>gi|319790757|ref|YP_004152397.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus EPS]
gi|315593220|gb|ADU34286.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus EPS]
Length = 196
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
+LV GG A S +N LVD + + + +G G S + +
Sbjct: 128 KDILVIGGVGFASSLVNEGLVDEFQFFVNPMAVGAG--RSVFHDQRKGHKLRLL 179
>gi|296140586|ref|YP_003647829.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296028720|gb|ADG79490.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 181
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ V GG +A F + ++D +++ + +G G P +F V
Sbjct: 115 VWVVGGGDLAAQFAEAGMLDEVVISYAPATVGSGRPLFP-----RAFDFELVEWAR 165
>gi|255534427|ref|YP_003094798.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
bacterium 3519-10]
gi|255340623|gb|ACU06736.1| Bifunctional deaminase-reductase domain protein [Flavobacteriaceae
bacterium 3519-10]
Length = 185
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LV G ++ I L+D + L ++ G G+P E+ N G
Sbjct: 114 KDILV-GSRSLIMQLIQLNLLDELQLMVHPVIAGS-GLPLF-EQISKSTNLELADTKRLG 170
Query: 348 SDVCLEYI 355
V L Y
Sbjct: 171 DAVILYYT 178
>gi|262200106|ref|YP_003271314.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262083453|gb|ACY19421.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 157
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+L V G + + + +LVD + L +V+G G L E E V D F +
Sbjct: 90 NLYVSGSGTLVRAQLVDKLVDELHLLVYPVVLGRGAR---LFENSNEIGLRLVSHDVFDN 146
Query: 349 DVC 351
V
Sbjct: 147 GVI 149
>gi|218675499|ref|ZP_03525168.1| probable dihydrofolate reductase protein [Rhizobium etli GR56]
Length = 124
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
K + + L G + + GG A ++ + L+D + + +V+
Sbjct: 30 WKAARPFHFITSGIEEALDKAKAAAGDKDVKIGGGVATVRRYLQAGLIDELHFAVAPVVL 89
Query: 321 GEGGIPSPLEEGYLEKNFMCVRR 343
G+G + F
Sbjct: 90 GKGEA-MFSGIDLPDLGFRVTEH 111
>gi|229179463|ref|ZP_04306816.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
172560W]
gi|228603964|gb|EEK61432.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus
172560W]
Length = 181
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+LL+ G + + + + L+D + +++G G ++ K +
Sbjct: 110 QNLLIYGSSDLTQTLMQHDLIDEYHFIVNPVIVGSG--KRLFKDQNKTKALKLIETRT 165
>gi|118445010|ref|YP_879007.1| cytidine and deoxycytidylate deaminase family protein [Clostridium
novyi NT]
gi|118135466|gb|ABK62510.1| Cytidine and deoxycytidylate deaminase family protein [Clostridium
novyi NT]
Length = 162
Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 29/126 (23%), Gaps = 32/126 (25%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG---------- 50
M ++ L + +IVK+ +I G T
Sbjct: 1 MERIDKCNYYLDICQTILERGTCLRR---NFGAIIVKNDEIISSGYTGAPRGRKNCSDLK 57
Query: 51 -----------GCP-------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQF 91
G HAE A+ A ++ Y+ + + A
Sbjct: 58 RCRREELNVERGTRYELCRSVHAEQNAIISARRQDMLNGVLYLVGKEVATGELVKNAAPC 117
Query: 92 IIECGI 97
+
Sbjct: 118 SLCKRF 123
>gi|306821103|ref|ZP_07454719.1| guanine deaminase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550796|gb|EFM38771.1| guanine deaminase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 63
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI 42
+ D FM + SR V N ++VKD ++
Sbjct: 10 TMIDEVFMEKTIELSRLAVE--HGNEPFGAVLVKDDEIV 46
>gi|262276493|ref|ZP_06054302.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
101886]
gi|262220301|gb|EEY71617.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP
101886]
Length = 174
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 37/104 (35%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTST-----------------NPSVACLIVKDGIVIG 43
M S D +FM A+ + N +
Sbjct: 1 MTQSELDQQFMRRAMALAAKAEAEGEVPVGAVVVHNGVVVGEGWNRLIG----------- 49
Query: 44 RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHY 82
+ HAE+ AL +AG++ + A YVTLEPC
Sbjct: 50 ----QHDATAHAEMMALRQAGKKLQNYRLLEAVLYVTLEPCPMC 89
>gi|255035139|ref|YP_003085760.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254947895|gb|ACT92595.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 185
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++ +FIN L+D L +++GEG + N + +
Sbjct: 116 IWLYGGGSLITTFINLDLIDVYRLAIYPVILGEG--KPVFDNIRHRVNLQLDQVKSSNNG 173
Query: 350 V-CLEYIGKN 358
+ LEY K
Sbjct: 174 ITFLEYSRKR 183
>gi|209551870|ref|YP_002283787.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209537626|gb|ACI57561.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 208
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG + A S I LVD L + +G+ G+P LE K + F G V
Sbjct: 146 GGVSFARSLIAEGLVDQFALLVIPVALGK-GLPLFLE-LTAPKPLKLMSSKAFPGGAVAQ 203
Query: 353 EYIG 356
Y
Sbjct: 204 IYRP 207
>gi|157364177|ref|YP_001470944.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
gi|157314781|gb|ABV33880.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO]
Length = 209
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 30 SVACLIVKD-GIVIGRGVTA------------YGGCPHAEVQALEEAGEEARGA-----T 71
+ C+IV G +I +G A HAE+ AL
Sbjct: 21 PIGCVIVNGSGNIISKGRNAIHESNFSGYPVFGNSIAHAELNALVSMKRIPDNMEISDYV 80
Query: 72 AYVTLEPCSHY 82
Y ++EPC
Sbjct: 81 IYTSMEPCVMC 91
>gi|145580452|pdb|2P4G|A Chain A, Crystal Structure Of A Pyrimidine Reductase-Like Protein
(Dip1392) From Corynebacterium Diphtheriae Nctc At 2.30
A Resolution
Length = 270
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
L R + + +EGG +V ++ +VD + L + +I
Sbjct: 180 FDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNII 221
>gi|38233977|ref|NP_939744.1| hypothetical protein DIP1392 [Corynebacterium diphtheriae NCTC
13129]
gi|38200239|emb|CAE49923.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 269
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
L R + + +EGG +V ++ +VD + L + +I
Sbjct: 179 FDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNII 220
>gi|229191279|ref|ZP_04318266.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus ATCC
10876]
gi|228592196|gb|EEK50028.1| Bifunctional deaminase-reductase-like protein [Bacillus cereus ATCC
10876]
Length = 166
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LL+ G + + + + L+D + +++G G + + R G
Sbjct: 95 QNLLIYGSSDLTQTLMQHDLIDEYHFIVNPVIVGSGKRLFKDQNNTKALKLIETRTTSSG 154
Query: 348 SDVCLEYIGKN 358
V L Y +
Sbjct: 155 V-VILSYQPEK 164
>gi|94314022|ref|YP_587231.1| putative deaminase-reductase [Cupriavidus metallidurans CH34]
gi|93357874|gb|ABF11962.1| putative deaminase-reductase (ribD domain) [Cupriavidus
metallidurans CH34]
Length = 177
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
L GV + V+GG V SF+ L+ +++ ++IG G P + +
Sbjct: 102 ERLAAEGVRRVYVDGG-QVVQSFLRDGLIADLVVTTVPVLIGA-GRPLF-GALPRDVDLA 158
Query: 340 CVRRDYF 346
V F
Sbjct: 159 LVSSRSF 165
>gi|297563204|ref|YP_003682178.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847652|gb|ADH69672.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 180
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GA VA + LVD I++Y +++G+G +P + + FG+
Sbjct: 119 GADVAAQCLRRGLVDEILVYVLPVLLGDGVRFTP-------PGLGRIDLEPFGN 165
>gi|213409075|ref|XP_002175308.1| tRNA-specific adenosine deaminase subunit tad2 [Schizosaccharomyces
japonicus yFS275]
gi|212003355|gb|EEB09015.1| tRNA-specific adenosine deaminase subunit tad2 [Schizosaccharomyces
japonicus yFS275]
Length = 365
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 35/167 (20%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
+S +FM AL + + G HAE+ A+E+
Sbjct: 214 NSVHHQFMKEALNMAELALK----------------------WNEVPGIQHAELVAVEDI 251
Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
+ T YVT+EPC CA + + I+ V + R G G +
Sbjct: 252 LKRYPPSIFEEVTLYVTVEPCL------MCAAALKQLHIKEVYFGCGND--RFGGCGSVF 303
Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165
K VD ++ + + K V +
Sbjct: 304 SINKDPSVDPPYPVYPGLYRAEAIMLMRQFYVQENTKAPVPKTKKQR 350
>gi|220919133|ref|YP_002494437.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956987|gb|ACL67371.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 204
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G A + + + LVD L+ +++G G G V
Sbjct: 132 GSAELLQTLLQHDLVDEYRLFVFPVLLGSG--KRLFAGGTAPAALRRVET 179
>gi|197124394|ref|YP_002136345.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
gi|196174243|gb|ACG75216.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
Length = 204
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G A + + + LVD LY +++G G G V
Sbjct: 132 GSAELLQTLLEHDLVDEYRLYVFPVLLGSG--KRLFAGGTAPAALRRVET 179
>gi|239907227|ref|YP_002953968.1| putative deaminase [Desulfovibrio magneticus RS-1]
gi|239797093|dbj|BAH76082.1| putative deaminase [Desulfovibrio magneticus RS-1]
Length = 162
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 30 SVACLIVKD-GIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ G ++ R +T HAE++ L +A G VTLEPC
Sbjct: 32 PVGAVLLSAAGELLARAGNAPITTNDPTAHAEMRVLRQAAAKVGNYRLPGTILAVTLEPC 91
Query: 80 SHY 82
Sbjct: 92 LMC 94
>gi|327439885|dbj|BAK16250.1| cytosine/adenosine deaminase [Solibacillus silvestris StLB046]
Length = 160
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP---HAEVQ 58
+++ D + + + ++ + ++V DG V+ G H E
Sbjct: 2 INNLDLKHLQRCVELAKIALEKGDE--PFGSVLVSADGEVLFEDHNHVAGGDHTQHPEF- 58
Query: 59 ALEE-AGEEAR-----GATAYVTLEPCSHY 82
A+ A + AT Y + E C
Sbjct: 59 AIARWAANNMKPEERIKATVYTSGEHCPMC 88
>gi|302654587|ref|XP_003019097.1| DRAP deaminase, putative [Trichophyton verrucosum HKI 0517]
gi|291182795|gb|EFE38452.1| DRAP deaminase, putative [Trichophyton verrucosum HKI 0517]
Length = 230
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 31/105 (29%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVT-AYGGC 52
S ++S L + TN V +++ ++ G T G
Sbjct: 10 STHLHYLSQCLELASQSPPK-PTNFRVGAILLLRLYPSSDTAELKETILSTGYTLELRGN 68
Query: 53 PHAEVQALEEAG--------------EEARGA----TAYVTLEPC 79
HAE + E+ RG+ YVT+EPC
Sbjct: 69 THAEQCCFAKLASHYGVAEEDLGEILEKKRGSEAQIELYVTMEPC 113
>gi|110598673|ref|ZP_01386938.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
gi|110339726|gb|EAT58236.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM
13031]
Length = 192
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT----AYGGCPHAEV 57
S D M + +R + T + K G ++ GV + HAE+
Sbjct: 27 SDHDR--MQFIIELARKNTLH-GTGGPFGAAVFERKSGNLVSIGVNLVVRSCCSHAHAEM 83
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
A+ A ++ T P S
Sbjct: 84 VAIAIAQKKINSWTLNHAKSPQHELVTSCEPCAMCF 119
>gi|332522933|ref|ZP_08399185.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
gi|332314197|gb|EGJ27182.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
Length = 177
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 2/125 (1%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ I +A + +D+ L L + +
Sbjct: 54 MGRKSLDDCPIEQIQGYHKKRFYVASHQDLHSDYPNLYFSKDIVATLKQLKQEEGGPIWL 113
Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352
GGA + HS + + L+D I+ ++G G P + +E + L
Sbjct: 114 FGGADLVHSVLATELIDQYIIGIIPTILG-QGRPLF-KGYSIEHKLQLIESTVTDGIAML 171
Query: 353 EYIGK 357
Y +
Sbjct: 172 RYQKR 176
>gi|282864006|ref|ZP_06273063.1| bifunctional deaminase-reductase-like protein [Streptomyces sp.
ACTE]
gi|282561084|gb|EFB66629.1| bifunctional deaminase-reductase-like protein [Streptomyces sp.
ACTE]
Length = 214
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 28/97 (28%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
+ P +F + + D L
Sbjct: 85 RGPWNDLEWQGWWGDEPPFHTPVFVLTHHQRPSFTLADTTFHFVDGDPATVLDQAREAAQ 144
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG + F+++ LVD++ + + + +G G
Sbjct: 145 GKDVRLGGGVSTVRQFLDADLVDTLHVAVAPVKLGSG 181
>gi|162147221|ref|YP_001601682.1| cytidine deaminase [Gluconacetobacter diazotrophicus PAl 5]
gi|209544272|ref|YP_002276501.1| CMP/dCMP deaminase [Gluconacetobacter diazotrophicus PAl 5]
gi|161785798|emb|CAP55369.1| putative cytidine deaminase [Gluconacetobacter diazotrophicus PAl
5]
gi|209531949|gb|ACI51886.1| CMP/dCMP deaminase zinc-binding [Gluconacetobacter diazotrophicus
PAl 5]
Length = 168
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA---YGGCP--HAE 56
+ D + A+ S +P +V D G V+ + G P HAE
Sbjct: 6 TPTDLDLLRRAIALSADARAQ-GRHPF--AALVADAQGRVVSTAINNSMPPEGDPTQHAE 62
Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHY 82
++A+ A T Y + EPC
Sbjct: 63 LRAVAGAARILPPDAMADCTLYTSAEPCCMC 93
>gi|302537773|ref|ZP_07290115.1| secreted protein [Streptomyces sp. C]
gi|302446668|gb|EFL18484.1| secreted protein [Streptomyces sp. C]
Length = 205
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G +A + LVD + L + +G G P G L F GS
Sbjct: 129 LQVHGSGQLAQWLLARDLVDELNLLVFPVFLGAGRRLFP--TGGLPTAFELTASRTTGSG 186
Query: 350 VCLEYIGK 357
+
Sbjct: 187 TAIHTYRP 194
>gi|222096672|ref|YP_002530729.1| pyrimidine reductase [Bacillus cereus Q1]
gi|221240730|gb|ACM13440.1| Pyrimidine Reductase [Bacillus cereus Q1]
Length = 181
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
LL+ G + + + L+D + +++G G + G K +
Sbjct: 110 QDLLIYGSGDLTQTLMQHDLIDEYHFIVNPVIVGSG--KRLFKTGNDTKALKLIET 163
>gi|189219256|ref|YP_001939897.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
gi|189186114|gb|ACD83299.1| Cytosine/adenosine deaminase [Methylacidiphilum infernorum V4]
Length = 146
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GC--PHAEVQALE 61
D + A ++ + + V+GRG G H E+ LE
Sbjct: 1 MDPFW-HIAFEEAKIGFEEGGI--PIGACLAYKDRVLGRGRNRRVQLGSVIKHGELDCLE 57
Query: 62 EA----GEEARGATAYVTLEPCSHYG 83
A + R A Y TL PC
Sbjct: 58 NARRYTAKIYREAILYTTLSPCWMCS 83
>gi|326331148|ref|ZP_08197444.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
gi|325951043|gb|EGD43087.1| riboflavin biosynthesis protein RibD C- domain protein
[Nocardioidaceae bacterium Broad-1]
Length = 193
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+L+ G A +A + ++ L+D L +V+G G E ++ V + + +
Sbjct: 125 ILIAGSAELARNLSDAGLIDRYHLLVFPVVLGA-GKSLWSETDKDKQMLKLVESETYANG 183
Query: 350 VC 351
+
Sbjct: 184 IL 185
>gi|302529663|ref|ZP_07282005.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302438558|gb|EFL10374.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 181
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++ G + ++ LVD + L + +V+G+G P E L+ F+ F +
Sbjct: 112 DIMTSGSTTLVRWLLSHGLVDELTLLQYPVVVGKGRRLFPAEGPQLD--FVLADTTAFRN 169
Query: 349 DVC-LEYIGKNL 359
V L Y +
Sbjct: 170 GVLRLVYRPSDE 181
>gi|329937604|ref|ZP_08287123.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoaurantiacus M045]
gi|329303003|gb|EGG46891.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoaurantiacus M045]
Length = 201
Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-YFG 347
+ V G +A + + LVD L +++G G +G + V G
Sbjct: 126 DISVVGSGDLAQTLMRHGLVDEYRLTVHPVILGSG--KRLFADGAIPTALEPVAVTATKG 183
Query: 348 SDVCLEYIG 356
V Y
Sbjct: 184 GTVVGVYRP 192
>gi|256421464|ref|YP_003122117.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
gi|256036372|gb|ACU59916.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
Length = 188
Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+++ G +++ SFI L+D ++ + I + G+P + + +R F
Sbjct: 118 KDMIIYGSSSIVQSFIRQGLIDEFQIWVHPVFI-QHGVPMF-RDMEEKVRLEFMRTRSFS 175
Query: 348 SDVCLEYIG 356
S V + Y
Sbjct: 176 SGVVILYYK 184
>gi|262276797|ref|ZP_06054590.1| tRNA-specific adenosine deaminase [alpha proteobacterium HIMB114]
gi|262223900|gb|EEY74359.1| tRNA-specific adenosine deaminase [alpha proteobacterium HIMB114]
Length = 158
Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 37 KDGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHYG 83
K+ ++ + Y C HAE+ ++ +A G Y +LEPC
Sbjct: 41 KNNRIVSKSHNQNIQDYNPCSHAEIISIIKACNKLNKNRLDGMDLYCSLEPCLMCS 96
>gi|332529818|ref|ZP_08405772.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis
ATCC 19624]
gi|332040839|gb|EGI77211.1| cmp/dcmp deaminase zinc-binding protein [Hylemonella gracilis
ATCC 19624]
Length = 158
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGI-VIGR-GVTAYGGCPHAE-----VQAL 60
R + A +R +P ++V DG V+ G HAE AL
Sbjct: 3 RHLKRANDVARRARDELGRHP-FGAILVAPDGETVLAEQG--NVDTVNHAESVLARTAAL 59
Query: 61 EEAGEEARGATAYVTLEPCSHY 82
GE T T+EPC+
Sbjct: 60 NYPGEYLGRCTLVTTVEPCAMC 81
>gi|329948029|ref|ZP_08294930.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328523168|gb|EGF50269.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 143
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79
V +++ +G V+ A HAE++AL AG G T VTLEPC
Sbjct: 18 PVGAVVLSPEGTVLAEAANAREAQHDPTAHAEIRALRAAGAALGDSHLDGCTLVVTLEPC 77
Query: 80 SHYGR----SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ + + R VR + Q + G
Sbjct: 78 TMCAGAIVLARVARLVLGAWEPRTGACGSVRDVVRDARANHQVEVRAG 125
>gi|325922349|ref|ZP_08184124.1| Putative deaminase [Xanthomonas gardneri ATCC 19865]
gi|325547168|gb|EGD18247.1| Putative deaminase [Xanthomonas gardneri ATCC 19865]
Length = 208
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GGAA A S I LVD +L I++G G + + F
Sbjct: 146 GGAAFARSLIAHNLVDEYVLGIYPILLGRGA--PIFCDLPAPMPLTLISSKIF 196
>gi|289766920|ref|ZP_06526298.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
gi|289697119|gb|EFD64548.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
Length = 212
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
V G +A + + LVD L ++IG G +G + V
Sbjct: 140 VVGSGDLAQTLMRHGLVDEYRLTIHPVIIGTG--KRLFADGAIPTALEPVSV 189
>gi|256783038|ref|ZP_05521469.1| secreted protein [Streptomyces lividans TK24]
Length = 201
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
V G +A + + LVD L ++IG G +G + V
Sbjct: 129 VVGSGDLAQTLMRHGLVDEYRLTIHPVIIGTG--KRLFADGAIPTALEPVSV 178
>gi|159897985|ref|YP_001544232.1| deaminase-reductase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891024|gb|ABX04104.1| bifunctional deaminase-reductase domain protein [Herpetosiphon
aurantiacus ATCC 23779]
Length = 193
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L+ L ++ + GG ++A + I +D +IL + +++G+G +
Sbjct: 112 DLVRRLKQEPGQNIWLCGGGSLASALIGE--IDQLILKVNPVILGQGIR--LFDRLDAPV 167
Query: 337 NFMCVRRDYFGSDV-CLEY 354
+ + F V Y
Sbjct: 168 QLELLEQQTFDGGVALHRY 186
>gi|146302171|ref|YP_001196762.1| hypothetical protein Fjoh_4439 [Flavobacterium johnsoniae UW101]
gi|146156589|gb|ABQ07443.1| hypothetical protein Fjoh_4439 [Flavobacterium johnsoniae UW101]
Length = 169
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ +G + + V GGA SF+ D + I+ G + + +K
Sbjct: 90 AVREFYKAKGYSKIFVAGGAYTYQSFLKEGHADEFYINYLPILTAAGAL--LVSHIPADK 147
Query: 337 NFMCVRRDYFGSDVC 351
++
Sbjct: 148 ILEIKENKVIAENIV 162
>gi|328864076|gb|EGG13175.1| hypothetical protein MELLADRAFT_114818 [Melampsora larici-populina
98AG31]
Length = 196
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFI----NSRLVDSIILYRSQIVIGEG-GIPSPLEE 331
K+ + G+ L++EGG+++ S + + +++ +++ S ++GEG + + +
Sbjct: 109 KVFEVCKINGINRLMIEGGSSIISSCLNYTGDHPILNILVVTVSPYMVGEGLTVKTSNID 168
Query: 332 GYLEKNFMCVRRDYFGSDVCLEYI 355
L ++ GSD Y
Sbjct: 169 SRLSL-LRHIQTKILGSDAVFAYT 191
>gi|323358814|ref|YP_004225210.1| dihydrofolate reductase [Microbacterium testaceum StLB037]
gi|323275185|dbj|BAJ75330.1| dihydrofolate reductase [Microbacterium testaceum StLB037]
Length = 213
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 30/108 (27%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ F D + + V A + +
Sbjct: 76 MGAAMFGLHSFPDDPDWRGWWGDEPPFRVPVLVLTHLERAPITFDNGTSFEFMSSGITDA 135
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ G + V GG + + + + LVD + + +++G GG
Sbjct: 136 VARARELAGDADVRVGGGLSTVRAALEADLVDRLHVAVRPVILGRGGR 183
>gi|182439951|ref|YP_001827670.1| hypothetical protein SGR_6158 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780617|ref|ZP_08239882.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|178468467|dbj|BAG22987.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660950|gb|EGE45796.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 187
Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
++ + G +++ G +AH+ I + VD L+ V G G P +GY
Sbjct: 108 EVRRLKAEEGGKDIVLTGSITLAHALIAAGAVDEYRLFVHPAVQGRGRRLFP--DGYELP 165
Query: 337 NFMCVRRDYF 346
+ F
Sbjct: 166 RLRLLESREF 175
>gi|282897354|ref|ZP_06305356.1| Riboflavin-specific deaminase [Raphidiopsis brookii D9]
gi|281198006|gb|EFA72900.1| Riboflavin-specific deaminase [Raphidiopsis brookii D9]
Length = 37
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322
GG + + LVD + L +++G
Sbjct: 3 GGGKLIACLLEFDLVDELWLTICPLILGS 31
>gi|239982740|ref|ZP_04705264.1| hypothetical protein SalbJ_25139 [Streptomyces albus J1074]
gi|291454588|ref|ZP_06593978.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291357537|gb|EFE84439.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 191
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G G+ P+ G + + + L
Sbjct: 126 GSLSMNRALMAAGLVDRLQVTIFPVITGRTGLD-PVFRGAADFDLELTESRVLDHHIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 VYRP 188
>gi|260905981|ref|ZP_05914303.1| bifunctional deaminase-reductase domain protein [Brevibacterium
linens BL2]
Length = 193
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
G ++ + + + LVD + + ++ G G P+ G + + +
Sbjct: 128 GSLSMNRALMEAGLVDRLQVTIYPVITGRTGA-QPIFAGTQDFDLELLDSTLLDG 181
>gi|73541599|ref|YP_296119.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
JMP134]
gi|72119012|gb|AAZ61275.1| bifunctional deaminase-reductase, C-terminal [Ralstonia eutropha
JMP134]
Length = 199
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
+ + L G + V+GG V SF+ L+ +++ ++IG G P
Sbjct: 113 FSDCAPRDAMAELAAEGAHRVYVDGG-QVVQSFLREGLITDLVVTTVPVLIG-TGRPLF- 169
Query: 330 EEGYLEKNFMCVRRDYF 346
+ + +F
Sbjct: 170 GALPRDVDLALESSRHF 186
>gi|316967943|gb|EFV52296.1| deoxycytidylate deaminase [Trichinella spiralis]
Length = 155
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 30/102 (29%), Gaps = 34/102 (33%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP-------------- 53
FM AL S+ IV D +IG G G P
Sbjct: 17 YFMGVALLSSKRSK---DPIMQEGACIVNSDNHIIGVGY---NGMPAGCSDDRMPWADQA 70
Query: 54 ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHY 82
HA + A + + A+G Y T PCSH
Sbjct: 71 NSILETKHPYICHAALNAVVNKISNSAKGCCLYTTHLPCSHC 112
>gi|255035145|ref|YP_003085766.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254947901|gb|ACT92601.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 217
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 7/164 (4%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G D+ G+ + L + + P +
Sbjct: 34 GWSFHYWDEIMGQVMDEGMSRPYDL---LLGRKTYDIFAAHWPFMENDPTAEQFNACNKY 90
Query: 256 LALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
+A K + L +L + G+ L V G A + + L+D + +
Sbjct: 91 VATQTLKDATWQNTVLLNGDTLAQLKALKSEDGI-DLQVHGSADFIQTLLRHNLIDEMNI 149
Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ +VIG+G G + Y+
Sbjct: 150 WIFPLVIGQGKKLFANGTVPSNLKLTKHSVSSTGV-IMTTYVPD 192
>gi|295838344|ref|ZP_06825277.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
gi|197695859|gb|EDY42792.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
Length = 217
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ V + + D + L G + +
Sbjct: 92 WRGWWGEEPPFGTPVVVLTHHPREPLHFGNGTSFHFLDASPKEALDHARDLAGGKDIRIG 151
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
GG + F+ + L+D + L +V+G G+ ++ F
Sbjct: 152 GGPSTVRQFLAADLIDFMHLITVPMVLGG-GVSIWDGLADVQDRFTIESTT 201
>gi|84687886|ref|ZP_01015753.1| RibD C-terminal domain protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664080|gb|EAQ10577.1| RibD C-terminal domain protein [Rhodobacterales bacterium HTCC2654]
Length = 178
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+D + L+ ++ G T ++GGA + HSF+ + L+ + + I++G+G E
Sbjct: 95 RQDPQALMDMVEIEGWTRAYIDGGA-LVHSFLRAGLIADMTITIIPILLGQGRSLFGPLE 153
Query: 332 GYLEKNFMCVRRDYFG 347
++ + G
Sbjct: 154 RDIDLKLEHAEKTKAG 169
>gi|323347994|gb|EGA82253.1| Tad2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 244
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYG----GCPHAEVQALEEAG 64
M A+R +R+ + T VAC+ G V+ G+ G HAE +++
Sbjct: 1 MRTAVRLARYALDHDET--PVACIFEHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIK 58
Query: 65 EEA---------RGATAYVTLEPCSHY 82
+ T YVT+EPC
Sbjct: 59 AMLGSRGVVDVFKDITLYVTVEPCIMC 85
>gi|302038118|ref|YP_003798440.1| hypothetical protein NIDE2810 [Candidatus Nitrospira defluvii]
gi|300606182|emb|CBK42515.1| conserved protein of unknown function [Candidatus Nitrospira
defluvii]
Length = 184
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + F ++ L+D +I+ + +G G L + + G
Sbjct: 114 RNVWLVGGGELVGQFYDAGLLDELIVQVGSVTLGSG--KPLLPRRITSPSLILDSARAMG 171
Query: 348 S 348
Sbjct: 172 P 172
>gi|325962407|ref|YP_004240313.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468494|gb|ADX72179.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
Length = 220
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 1/124 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + D K V + + + D +
Sbjct: 77 MGRNKFGPQRGPWENEDWKGWWGDNPVFHTPVVVLTHHPRPVLEMEGGTTFHFVDADPVS 136
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + + GGA+ F+ + L+D + + IV+G G LE+
Sbjct: 137 ALEQARALAPGQDVRIGGGASTVRQFLEADLIDYMHIVLVPIVLGRGERLW-DGLEGLEE 195
Query: 337 NFMC 340
F
Sbjct: 196 RFDI 199
>gi|300790768|ref|YP_003771059.1| hypothetical protein AMED_8967 [Amycolatopsis mediterranei U32]
gi|299800282|gb|ADJ50657.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 207
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
L V G A+ + I LVD L+ +V+G+G P +G + K F V +
Sbjct: 128 LQVHGSGALLQTLIAHDLVDEYRLWLYPVVLGKGRRLFP--DGVVPKAFEHVETRH 181
>gi|294056409|ref|YP_003550067.1| bifunctional deaminase-reductase domain protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615742|gb|ADE55897.1| bifunctional deaminase-reductase domain protein [Coraliomargarita
akajimensis DSM 45221]
Length = 174
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
LLT + G + V+GG + + + + L+ +IL + I +G GIP + ++
Sbjct: 97 DLLTQISALGYERIYVDGG-QIIQAAMRANLLSELILTQIPISLG-DGIPLF-PKSEQQR 153
Query: 337 NFMCVRRDYFGSDVCLEYI 355
F + + G + +
Sbjct: 154 QFTHTKTEVVGPGLVKSWY 172
>gi|325660961|ref|ZP_08149588.1| hypothetical protein HMPREF0490_00320 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331085330|ref|ZP_08334416.1| hypothetical protein HMPREF0987_00719 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472468|gb|EGC75679.1| hypothetical protein HMPREF0490_00320 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330408113|gb|EGG87603.1| hypothetical protein HMPREF0987_00719 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 161
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 35/98 (35%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCP-------------------------------HAEVQAL 60
+IVK+ VI G G P HAE A+
Sbjct: 28 GAVIVKNDEVISTGY---AGAPRGRKNCTDINMCIREKLKIPRGERYELCRSVHAEANAI 84
Query: 61 EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97
A ++ G++ Y+T + +
Sbjct: 85 ISASRDKMIGSSLYLTGIDMKTNDYVENSNSCSMCKKM 122
>gi|314121791|ref|YP_004063910.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
gi|313151548|gb|ADR32604.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7]
Length = 193
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC----PHAE 56
+ A S+ + V +I K+G +I G + G HAE
Sbjct: 7 LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCEHAE 54
>gi|308814577|ref|YP_003934851.1| dCMP deaminase [Shigella phage SP18]
gi|308206169|gb|ADO19568.1| dCMP deaminase [Shigella phage SP18]
Length = 193
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC----PHAE 56
+ A S+ + V +I K+G +I G + G HAE
Sbjct: 7 LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCEHAE 54
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 36/129 (27%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62
S D ++ A R + K+ + HAE+ A+
Sbjct: 78 FSQVDRFVLAKAHREAHSAWS-------------KNNEI------------HAELNAILF 112
Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119
A G GAT YVTL PC ++ + + + L
Sbjct: 113 AARMGSSIEGATMYVTLSPCPDCAKAISQSGIKKLVYC--------ETYDKNIPGWDDIL 164
Query: 120 SQKGIIVDR 128
GI V
Sbjct: 165 KNAGIEVFN 173
>gi|271968200|ref|YP_003342396.1| dihydrofolate reductase [Streptosporangium roseum DSM 43021]
gi|270511375|gb|ACZ89653.1| dihydrofolate reductase [Streptosporangium roseum DSM 43021]
Length = 178
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T + V GGA A S LVD L IV+G G+P + + + F
Sbjct: 113 TDIFVPGGARFAQSVSRLGLVDEYRLIVHPIVLGS-GLPLFTD----PIDLKLLSSREFS 167
Query: 348 SD-VCLEYIG 356
+ V L Y
Sbjct: 168 TGAVALTYRR 177
>gi|220911157|ref|YP_002486466.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
gi|219858035|gb|ACL38377.1| bifunctional deaminase-reductase domain protein [Arthrobacter
chlorophenolicus A6]
Length = 219
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 1/128 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + K V + + D
Sbjct: 77 MGRNKFGPQRGPWEDKEWKGWWGDNPVFHTPVVVLTHHPRPTLEMEGGTTFHFIDADPAT 136
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + + GGA F+ + L+D + + I++G G L++
Sbjct: 137 ALEKARELAPGLDVRIGGGADTVRQFLEADLIDHMHIAVVPIILGRGERLW-DGLEGLDE 195
Query: 337 NFMCVRRD 344
F
Sbjct: 196 RFDIESTT 203
>gi|256824403|ref|YP_003148363.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
gi|256687796|gb|ACV05598.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
Length = 196
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
G + V+GG V F+ + L+D I + + ++IG G P G+L+ +
Sbjct: 117 GARQVYVDGG-MVVQEFLRADLIDEISIGWAPVLIGS-GRPLF---GHLDHDLQL 166
>gi|126348230|emb|CAJ89951.1| putative dihydrofolate reductase [Streptomyces ambofaciens ATCC
23877]
Length = 202
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V G A + H ++ L+D L +++G G + V + + +
Sbjct: 134 IIVHGSATLNHGLSDAGLIDRYHLLVFPVLLGA-GKRLFSATDKDAQRLKLVEHEVYAN 191
>gi|326519634|dbj|BAK00190.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 154
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 30/94 (31%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVAC--------------LIVKDGIVIGRGVTAYGGCP 53
+F+S A+ + V P ++VK+
Sbjct: 12 HKFLSIAVEEAYRAVDRGHGRP-FGAVVVRNDKVVVSCHNMVVKN----------TDATA 60
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAEV A+ EA ++ Y + EPC
Sbjct: 61 HAEVTAIREACKKLGKTDLSDCEMYASCEPCPMC 94
>gi|254380894|ref|ZP_04996260.1| bifunctional deaminase-reductase domain containing protein
[Streptomyces sp. Mg1]
gi|194339805|gb|EDX20771.1| bifunctional deaminase-reductase domain containing protein
[Streptomyces sp. Mg1]
Length = 127
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ + GGA +A + +D +I+ R +VIG GIP + + F F
Sbjct: 59 IWLCGGANLAGQLLEE--IDELIIKRYPVVIGS-GIPLF-DAPFRPSGFKLTDSRVF 111
>gi|182434219|ref|YP_001821938.1| hypothetical protein SGR_426 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326774731|ref|ZP_08233996.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|178462735|dbj|BAG17255.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326655064|gb|EGE39910.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 193
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ + + + LVD + + ++ G G P+ G + + + G L
Sbjct: 128 GSLSMNRALMAAGLVDRVQVTVFPVITGRTGTE-PVLRGAADFDLELIESRTLDGRTQEL 186
Query: 353 EYIG 356
Y
Sbjct: 187 TYRP 190
>gi|146299578|ref|YP_001194169.1| deaminase-reductase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146153996|gb|ABQ04850.1| bifunctional deaminase-reductase domain protein [Flavobacterium
johnsoniae UW101]
Length = 200
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + A + + RKK+ ++L ++ + G+
Sbjct: 60 GRKTFEIWEDYWPKNAAFWPDINEGNKYVLSKTRKKSDWKNSIFIKNLAEIKKLKETEGL 119
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ V G + + H + + LVD I L +++G G ++ F +
Sbjct: 120 -DIQVWGSSELIHLLLKNDLVDEIRLKIHPLLLGRG--KKLFDDNAHPSGFELIENT 173
>gi|21225317|ref|NP_631096.1| hypothetical protein SCO7032 [Streptomyces coelicolor A3(2)]
gi|7619787|emb|CAB88165.1| conserved hypothetical protein SC1H10.21 [Streptomyces coelicolor
A3(2)]
Length = 213
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G AA+ S ++ L+D L +++G G + + V + + +
Sbjct: 145 IIVHGSAALNRSLSDAGLIDRYHLLVFPLLLGA-GKRLFSDSDKDARKLRLVEHEVYANG 203
Query: 350 V 350
+
Sbjct: 204 I 204
>gi|298251116|ref|ZP_06974920.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297549120|gb|EFH82987.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 195
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ G +A +F+ L+D + + ++GEG + + F
Sbjct: 123 KDIWFLGSPMLARTFMELDLIDEYRININPTILGEG--KALFAGVTRSFPLKLLASKTFQ 180
Query: 348 SDVC-LEYIGKN 358
S V L Y
Sbjct: 181 SGVVALRYEPDR 192
>gi|134099075|ref|YP_001104736.1| hypothetical protein SACE_2518 [Saccharopolyspora erythraea NRRL
2338]
gi|291006826|ref|ZP_06564799.1| hypothetical protein SeryN2_20083 [Saccharopolyspora erythraea NRRL
2338]
gi|133911698|emb|CAM01811.1| hypothetical protein SACE_2518 [Saccharopolyspora erythraea NRRL
2338]
Length = 192
Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
G ++ + + + LVD + + ++ G G+ P+ G + + + + L
Sbjct: 126 GSLSMNRALMAAGLVDRVQMTLFPVITGRTGLD-PIFRGAADFDLELIEHRTLDGHIQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 IYRP 188
>gi|291439081|ref|ZP_06578471.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341976|gb|EFE68932.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 217
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G A + S ++ L+D L +++G G + + V + + +
Sbjct: 149 IIVHGSATLNRSLSDAGLIDRYHLLVFPLLLGA-GKRLFSDTDKDTQKLRLVEHEAYANG 207
Query: 350 V 350
+
Sbjct: 208 I 208
>gi|289767548|ref|ZP_06526926.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
gi|289697747|gb|EFD65176.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces lividans TK24]
Length = 213
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G AA+ S ++ L+D L +++G G + + V + + +
Sbjct: 145 IIVHGSAALNRSLSDAGLIDRYHLLVFPLLLGA-GKRLFSDTDKDARKLRLVEHEVYANG 203
Query: 350 V 350
+
Sbjct: 204 I 204
>gi|256783664|ref|ZP_05522095.1| hypothetical protein SlivT_04150 [Streptomyces lividans TK24]
Length = 190
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G AA+ S ++ L+D L +++G G + + V + + +
Sbjct: 122 IIVHGSAALNRSLSDAGLIDRYHLLVFPLLLGA-GKRLFSDTDKDARKLRLVEHEVYANG 180
Query: 350 V 350
+
Sbjct: 181 I 181
>gi|239930715|ref|ZP_04687668.1| hypothetical protein SghaA1_21008 [Streptomyces ghanaensis ATCC
14672]
Length = 190
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G A + S ++ L+D L +++G G + + V + + +
Sbjct: 122 IIVHGSATLNRSLSDAGLIDRYHLLVFPLLLGA-GKRLFSDTDKDTQKLRLVEHEAYANG 180
Query: 350 V 350
+
Sbjct: 181 I 181
>gi|187924315|ref|YP_001895957.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
gi|187715509|gb|ACD16733.1| CMP/dCMP deaminase zinc-binding [Burkholderia phytofirmans PsJN]
Length = 171
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 23/69 (33%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGC----PHA------------EVQALEEAGEEARGATAY 73
V ++V+ VI G G HA E G Y
Sbjct: 18 PVGAVLVRGEEVIATGFNHPIGGHDPSAHAEMAALRAAAQAVE-------NYRLPGCELY 70
Query: 74 VTLEPCSHY 82
VTLEPC
Sbjct: 71 VTLEPCLMC 79
>gi|291515557|emb|CBK64767.1| Cytosine/adenosine deaminases [Alistipes shahii WAL 8301]
Length = 148
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 35/103 (33%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV------------IGRGV-- 46
M D +FM AL ++ + K V IGRG
Sbjct: 1 MEQHETDEKFMRLALNEAQKAL--------------KQQEVPIGAVVVAGGAVIGRGHNL 46
Query: 47 --TAYGGCPHAEVQ-----ALEEAGEEARGATAYVTLEPCSHY 82
T HAE+Q A G+ + T YVT+EPC
Sbjct: 47 VETLADPTAHAEMQALTAAAATLGGKYLQECTLYVTVEPCIMC 89
>gi|87124293|ref|ZP_01080142.1| putative cytidine/deoxycytidylate deaminase [Synechococcus sp.
RS9917]
gi|86167865|gb|EAQ69123.1| putative cytidine/deoxycytidylate deaminase [Synechococcus sp.
RS9917]
Length = 147
Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAEVQALEEA 63
R + A + R V +I+ G IG G HAE+ AL +A
Sbjct: 3 RLLRRADQLGREGE------VPVCAVILDGLGRCIGYGGNRRERQRDPLGHAELVALGQA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
+ T VTLEPC
Sbjct: 57 SQLRQDWRFNDCTLLVTLEPCPMC 80
>gi|332671961|ref|YP_004454969.1| bifunctional deaminase-reductase domain-containing protein
[Cellulomonas fimi ATCC 484]
gi|332340999|gb|AEE47582.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
ATCC 484]
Length = 203
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 24/71 (33%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ + GV +LV G +V + + LVD + L+ + +G E
Sbjct: 106 AVTALKAEAGVERVLVPGSLSVVRQLLAAGLVDELRLFVHPVAARKGERLFDEGEPIYPL 165
Query: 337 NFMCVRRDYFG 347
+ G
Sbjct: 166 RLLRSDVFPTG 176
>gi|325002091|ref|ZP_08123203.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia sp. P1]
Length = 181
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ V G A + + + LVD++ L+ + +G G L V + + +
Sbjct: 114 IYVSGSATLVRAMLADGLVDTLNLFVYPVALGAGER---LFAAGQRIPLRLVETEAYENG 170
Query: 350 -VCLEY 354
V + Y
Sbjct: 171 VVRMTY 176
>gi|331212549|ref|XP_003307544.1| tRNA-specific adenosine deaminase subunit TAD2 [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
gi|309297947|gb|EFP74538.1| tRNA-specific adenosine deaminase subunit TAD2 [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
Length = 298
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 30 SVACLIVKD--GIVIGRGVTA----YGGCPHAEVQAL-------EEAGEEARGATAYVTL 76
V C++V V+ +G C HAE A+ + YVT+
Sbjct: 169 PVGCVLVSKTTDKVLSKGRNRTNETKNACLHAEFDAIGGLHSVTPADKIDWNDVKLYVTV 228
Query: 77 EPCSH 81
EPC
Sbjct: 229 EPCLM 233
>gi|332671433|ref|YP_004454441.1| bifunctional deaminase-reductase domain-containing protein
[Cellulomonas fimi ATCC 484]
gi|332340471|gb|AEE47054.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi
ATCC 484]
Length = 187
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 5/127 (3%)
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSL 290
+ PV+ D P + + + + R +
Sbjct: 59 YWPTPEAHAADPVVAAFMCDLPKVVASRTLTSHPWGPTTFVADDVAGRLRDLKDRPGKQI 118
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD- 349
V G +A+ S + + +VD + + +V+G G L+ + FG+
Sbjct: 119 AVFGSSALVASLLPTGVVDEVRVLLQPVVLGAGVR--FLDGAPHGTTLERLDVRTFGNGS 176
Query: 350 VCLEYIG 356
L Y
Sbjct: 177 TLLTYRP 183
>gi|319949108|ref|ZP_08023201.1| hypothetical protein ES5_06862 [Dietzia cinnamea P4]
gi|319437218|gb|EFV92245.1| hypothetical protein ES5_06862 [Dietzia cinnamea P4]
Length = 195
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+LV+G A +A + ++ L D L ++G G + + V + +G+
Sbjct: 122 ILVQGSATLARNLSDAGLTDRYHLLVFPWILGAGKRMWS-DTDKPRQKLELVESEAYGNG 180
Query: 350 V-CLEY 354
V L Y
Sbjct: 181 VQKLIY 186
>gi|307324858|ref|ZP_07604063.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889356|gb|EFN20337.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 182
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353
G + + + + LVD + + ++ G G L +G +F + + V L
Sbjct: 120 GGSFSRTLLEHGLVDEYLFWLFPVIAGSGER---LYDGIDTTDFDLIDVKRLTNGVLGLT 176
Query: 354 YIGK 357
Y+
Sbjct: 177 YVPN 180
>gi|302534123|ref|ZP_07286465.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
gi|302443018|gb|EFL14834.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
Length = 197
Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
L+V G A++A + + LVD + L +V+G G P +
Sbjct: 127 RDLVVMGSASLARTLLTEDLVDELRLMTMPVVLGGGKRLFPDDG 170
>gi|295836702|ref|ZP_06823635.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
gi|295826168|gb|EDY44499.2| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB74]
Length = 201
Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
GRG+ +L+ GG A+ S + LVD + + + +++G G +PL G + +
Sbjct: 132 GRGLDVVLM-GGGALIRSAFAAGLVDVLSQHLAPVLLGAG---TPLCTGGTARTLVRRDV 187
Query: 344 D 344
Sbjct: 188 R 188
>gi|229818945|ref|YP_002880471.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564858|gb|ACQ78709.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 192
Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ V G + + + + LVD + L IV+G G + G
Sbjct: 112 RDIAVTGSITLTQALLAAGLVDELRLLVHPIVLGA-GRRLFADGGAFA 158
>gi|116669202|ref|YP_830135.1| deaminase-reductase domain-containing protein [Arthrobacter sp.
FB24]
gi|116609311|gb|ABK02035.1| bifunctional deaminase-reductase domain protein [Arthrobacter sp.
FB24]
Length = 201
Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 25/108 (23%)
Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275
+ + A V +
Sbjct: 62 YVMGRNMFGPIRGDWDEEWTGWWGAEPPYHAPVFVLTHHAHDPIQMDGGTTFHFVTEGFD 121
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + + GGA+ + + ++D + L + +++G G
Sbjct: 122 AAYSAACRAAGDQGVDIAGGASTVRQALIAGVIDELTLDIAPVLLGSG 169
>gi|313900444|ref|ZP_07833937.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Clostridium sp. HGF2]
gi|312954506|gb|EFR36181.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Clostridium sp. HGF2]
Length = 176
Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 2/126 (1%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
++ L+P + E+ + + + I+ D+ + + + + +
Sbjct: 53 WNTYHQIITELSPERWLYEHLESYIFTHRKLIGKKNIHFIQGDICESILHMKRQEGKDIW 112
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
+ GGA + I ++D+ + I++G GIP + +
Sbjct: 113 ICGGADIIQPLIEQNIIDTYHISVIPIILGS-GIPLFQGRKTI-LKLKLAASKSYNGITD 170
Query: 352 LEYIGK 357
L Y +
Sbjct: 171 LIYKRR 176
>gi|268608090|ref|ZP_06141818.1| CMP/dCMP deaminase, zinc-binding protein [Ruminococcus flavefaciens
FD-1]
Length = 164
Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 27/122 (22%), Gaps = 30/122 (24%)
Query: 32 ACLIVKDGIVIGRGV-----------------------TAYGGCP-----HAEVQALEEA 63
+IVK+ V+ G G HAE AL
Sbjct: 35 GAVIVKNDAVVSTGYNGSPRGTENCCDRGECPRMALGLHQGEGYAMCRAVHAEANALLNC 94
Query: 64 GEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
+ GA Y+T G + + + + S
Sbjct: 95 SRDQTVGADLYLTGV-NPEDGSVHMAKPCPLCARMIIQAGIKNVYLRQSSEPDGYKCVPA 153
Query: 123 GI 124
G
Sbjct: 154 GE 155
>gi|150864126|ref|XP_001382832.2| hypothetical protein PICST_29473 [Scheffersomyces stipitis CBS
6054]
gi|149385382|gb|ABN64803.2| tRNA-specific adenosine deaminase subunit [Scheffersomyces
stipitis CBS 6054]
Length = 276
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALE--- 61
M+ L + T V+CLI ++ G + G HAE A++
Sbjct: 11 MAKCLFVGYRAL--TVNETPVSCLIEDIETNEILSIGYNYTNISLNGTKHAEFIAVKRLR 68
Query: 62 --EAGEEARGATAYVTLEPCSHY 82
+ V++EPC
Sbjct: 69 DSNLNIDFGKVRLIVSVEPCIMC 91
>gi|15229953|ref|NP_187181.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis
thaliana]
gi|6729040|gb|AAF27036.1|AC009177_26 unknown protein [Arabidopsis thaliana]
gi|332640696|gb|AEE74217.1| Cytidine/deoxycytidylate deaminase-like protein [Arabidopsis
thaliana]
Length = 113
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 49 YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
HAEV A+ EA ++ Y + EPC
Sbjct: 6 KDPTAHAEVIAIREACKKLNEIKLSECEIYASCEPCPMC 44
>gi|284030963|ref|YP_003380894.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283810256|gb|ADB32095.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 201
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
G V S + + L+D ++L++ +++G G S +E V
Sbjct: 140 GGGVVTSALAAGLLDEVVLHQVPVLLGGG--RSFFQEVPQHVQLRLV 184
>gi|87301779|ref|ZP_01084613.1| RibD/ribG C-terminal domain protein [Synechococcus sp. WH 5701]
gi|87283347|gb|EAQ75302.1| RibD/ribG C-terminal domain protein [Synechococcus sp. WH 5701]
Length = 219
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 7/212 (3%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ L +A+S D + A G+ + G + + A +D LVG TV
Sbjct: 1 MSLPQLRLVLAISLDGRLAPAHGGAAQLGGVGDRTVLEEALAWADGCLVGAATVRVHRST 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNI 265
L + + + + + L P + + L +
Sbjct: 61 CLIHRPELLAQRRL----EGRSPQPITVVVSRGRGLEPGLPFFSQPLERWLLSPGPAQPA 116
Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-G 324
+ D D L L RG+ L++ GGA +A + + LV + L +++G G
Sbjct: 117 FDAHLDLGDWPSCLEELGSRGLRRLVLLGGAELATALLVEGLVQELQLSLCPLLLGGRHG 176
Query: 325 IPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYI 355
S L +++ + G ++ L Y
Sbjct: 177 WVSALAPDLTGQSWELIEHRPLGGGEMLLRYR 208
>gi|220912199|ref|YP_002487508.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
gi|219859077|gb|ACL39419.1| CMP/dCMP deaminase zinc-binding [Arthrobacter chlorophenolicus
A6]
Length = 161
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 21/88 (23%)
Query: 9 RFMSAALRFS----RWHVGLTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQA 59
R++ A+ + G ++V DG V GV HAEV A
Sbjct: 12 RYLQQAVGLATDNVDRGGG------PFGAVVVTADGRVF-EGVNRVTLDNDPTAHAEVVA 64
Query: 60 LEEAGE-----EARGATAYVTLEPCSHY 82
+ A +GA Y + EPC
Sbjct: 65 IRAAAAGTANFNLQGAVLYASCEPCPLC 92
>gi|329851066|ref|ZP_08265823.1| ribD C-terminal domain protein [Asticcacaulis biprosthecum C19]
gi|328839912|gb|EGF89484.1| ribD C-terminal domain protein [Asticcacaulis biprosthecum C19]
Length = 181
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 13/160 (8%)
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
P + + + + + + A D K
Sbjct: 25 MPPPSEQHFQYWIDTIKGHAATIYGRRMYELMRYWDEDRAE-WDAPRRDFAEAWRKMPKW 83
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTS-------LLVEGGAAVAHSFINSRLVDSIILYRS 316
++ + L++ + V S ++ G +A L+D ++
Sbjct: 84 VVSSTLTEVGPNATLISSNMETQVRSLKADTDGIISVSGPQLAGLMTELGLIDEYHMHLR 143
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYI 355
V+G G P D L Y+
Sbjct: 144 PYVLG-EGKPFFHGAR---PPLRLNSSHQIDDDTMHLVYV 179
>gi|296123847|ref|YP_003631625.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
DSM 3776]
gi|296016187|gb|ADG69426.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus
DSM 3776]
Length = 503
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGC 52
+FD M A + L+ V ++ KD ++ G G
Sbjct: 224 TFDEHAMFMAFSSALRSADLSR---QVGAVVAKDKQILSTGANDCPKAGG 270
>gi|119963200|ref|YP_947770.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119950059|gb|ABM08970.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 176
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG + F+ L+D + L +V+G G+P + ++
Sbjct: 99 KDICLFGGGGLVTEFVELGLIDELGLSIIPVVLGG-GVP-FFGRVSQWTTLELLECRHYP 156
Query: 348 SDV-CLEYIGKN 358
S + L Y +N
Sbjct: 157 SGIVLLNYRLEN 168
>gi|259415788|ref|ZP_05739708.1| cytidine and deoxycytidylate deaminase family protein
[Silicibacter sp. TrichCH4B]
gi|259347227|gb|EEW59004.1| cytidine and deoxycytidylate deaminase family protein
[Silicibacter sp. TrichCH4B]
Length = 150
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 20/90 (22%)
Query: 1 MPVSSFDARFM--SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCP 53
M S FM + + G V ++V G V+ R
Sbjct: 1 MEFRS----FMAEALEEAQAAAARGEV----PVGAVLVNPSGEVVARAGNRTRELNDPTA 52
Query: 54 HAEVQALEEAG-----EEARGATAYVTLEP 78
HAEV + E G YVTLEP
Sbjct: 53 HAEVLVIRAGCAVLGSERLTGHDLYVTLEP 82
>gi|197104843|ref|YP_002130220.1| dihydrofolate reductase [Phenylobacterium zucineum HLK1]
gi|196478263|gb|ACG77791.1| dihydrofolate reductase [Phenylobacterium zucineum HLK1]
Length = 220
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 26/92 (28%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ P+ +A D + L +LL +
Sbjct: 70 AYWPFAPQDHPIAASFNRATKFVATRAGAPMTWSNSIALADAAADVARLKQTDGPTLLTQ 129
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
G + + + L+D + L +++G G
Sbjct: 130 GSGDLLQTLMAEGLIDELRLMTYPVILGRGKR 161
>gi|21222115|ref|NP_627894.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
gi|5019352|emb|CAB44405.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
Length = 215
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 32/142 (22%)
Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241
+ G L D + E
Sbjct: 41 WAGATANWPNRTEPGGTRGLDDYFTRDFSHHIGAEIMGRNKFGPQRGPWQDHEWQGWWGD 100
Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
P +F + + D L + + GG
Sbjct: 101 EPPFRTPVFVLTHHARPSFTLSDTTFHFVDGEPATVLAQAREAARGKDVRLGGGVTTVRE 160
Query: 302 FINSRLVDSIILYRSQIVIGEG 323
F+++ LVD++ + + + +G G
Sbjct: 161 FLDAGLVDTLHVAVAPVTLGSG 182
>gi|296102254|ref|YP_003612400.1| putative bifunctional deaminase-reductase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295056713|gb|ADF61451.1| putative bifunctional deaminase-reductase [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 178
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
K+ L L + + ++GG V SF+ LV +++ ++IG G
Sbjct: 91 QFSRCTPKEALAELAAQNAHRVYIDGG-QVIQSFLREGLVADMVITTVPVLIGSG--KPL 147
Query: 329 LEEGYLEKNFMCVRRDYF 346
+ + M + F
Sbjct: 148 FGSLPRDIDLMLLSTRSF 165
>gi|256832618|ref|YP_003161345.1| bifunctional deaminase-reductase domain-containing protein [Jonesia
denitrificans DSM 20603]
gi|256686149|gb|ACV09042.1| bifunctional deaminase-reductase domain protein [Jonesia
denitrificans DSM 20603]
Length = 261
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G + R +++ +L + + + P++ T
Sbjct: 92 GYEGIEVPAQWCGVRSRLGLPEHIQLVVVSGSGRLPE-AVLSPGVGVPPLVATTVVGARR 150
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
LA ++ + + + D+ ++ LV RG+ +L+EGG ++ ++ +VD + L
Sbjct: 151 LAGRIDERQLMVCAGERVDVSWVVDQLVVRGMGRVLMEGGPSLLAQAFSAGVVDELALTT 210
Query: 316 SQIV 319
++
Sbjct: 211 VGVL 214
>gi|291613576|ref|YP_003523733.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291583688|gb|ADE11346.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 196
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
L + G + + I++ L+D + +V+GEG E G +N V
Sbjct: 121 DLHIWGSGELLQTLISADLIDEFRIAVFPVVLGEG--KRLFENGVPPRNLTLVDTR 174
>gi|20093154|ref|NP_619229.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
acetivorans C2A]
gi|19918495|gb|AAM07709.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
acetivorans C2A]
Length = 223
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 9/74 (12%), Positives = 23/74 (31%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ L G ++ + G + + +V+ I L + ++G+ G
Sbjct: 138 RQALEIANEKYGFKLVVSDSGGILNSILLEQGIVEEISLVLTPEIVGKNGTNLFRGVEKA 197
Query: 335 EKNFMCVRRDYFGS 348
+R +
Sbjct: 198 GIQLELIRNEIVEK 211
>gi|66808325|ref|XP_637885.1| hypothetical protein DDB_G0286161 [Dictyostelium discoideum AX4]
gi|60466312|gb|EAL64373.1| hypothetical protein DDB_G0286161 [Dictyostelium discoideum AX4]
Length = 422
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 13/81 (16%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRG-VTAYGGCPHAEVQALEE 62
FM AL + +IV D V+ G + H+E+ A+
Sbjct: 66 EKHEMFMKIALEIAIKSKVK------FVSIIVSPDDRVLCSGIFSKENAILHSELVAITN 119
Query: 63 AGEEAR-----GATAYVTLEP 78
+ T Y T EP
Sbjct: 120 CSSSHKMVTFENHTIYSTAEP 140
>gi|310796661|gb|EFQ32122.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 237
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 11/131 (8%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCP--HAEVQALEE-- 62
+M + + + +IV V+ G G P H E+ A+
Sbjct: 44 EYMRKT-NEALYRQSGPCPFAAFGAIIVNHTSDEVVCEGANFRTGDPTIHGEISAINACT 102
Query: 63 AGEEARGAT---AYVTL-EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
A +G T + + + G
Sbjct: 103 AKVTKQGMTPTEIFAAWGDLSIYTNAESCPMCASAIRWAGFKEYVYGTTIQHNYNVGWGV 162
Query: 119 LSQKGIIVDRM 129
++ V +
Sbjct: 163 MTLSNYDVFQQ 173
>gi|145505045|ref|XP_001438489.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405661|emb|CAK71092.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 38/110 (34%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCP---------- 53
+D FM A + + SV +++ + ++ G P
Sbjct: 153 DWDVYFMKIAYTVKQRSNCMKK---SVGAVLINNNKRILSTSY---NGTPKVMKNCNEGG 206
Query: 54 --------------------HAEVQALEEAGE-EARGATAYVTLEPCSHY 82
HAE + E G + R T Y TL PC
Sbjct: 207 CDVCKESQTLDLILYKCMCIHAEEGCILELGITQTRNTTLYTTLFPCVWC 256
>gi|134115449|ref|XP_773438.1| hypothetical protein CNBI0520 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256064|gb|EAL18791.1| hypothetical protein CNBI0520 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 224
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 25/99 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D +M ++ + N +IV + ++ G + H EV
Sbjct: 35 EVDLHWMRKSIEV----MPPCHFNAY-GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89
Query: 59 ALEEAGEEARG--------------ATAYVTLEPCSHYG 83
A+ ++ + Y T EPC G
Sbjct: 90 AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCG 128
>gi|269839785|ref|YP_003324478.1| bifunctional deaminase-reductase domain protein [Thermobaculum
terrenum ATCC BAA-798]
gi|269791515|gb|ACZ43655.1| bifunctional deaminase-reductase domain protein [Thermobaculum
terrenum ATCC BAA-798]
Length = 180
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+L+ G + + + L+D L IV+G G G V+ G
Sbjct: 113 QDVLIYGSGELVRTLMQQDLIDEYRLMVFPIVVGSGKQLFQGGSGTKSLRLREVKSFSSG 172
Query: 348 SDVCLEY 354
V L Y
Sbjct: 173 V-VVLTY 178
>gi|28572531|ref|NP_789311.1| hypothetical protein TW378 [Tropheryma whipplei TW08/27]
gi|28410663|emb|CAD67049.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
Length = 231
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 21/187 (11%), Positives = 57/187 (30%), Gaps = 6/187 (3%)
Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191
I + K I S + C S ++ + +H +R +D
Sbjct: 1 MSKAIQDFISEKYKFPKDDWICANYIQSFSGNLNSDNCTSDTLSNPRDRMILHTIREAND 60
Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251
A+ VG T ++ + + + +S + + + + + I +
Sbjct: 61 AVFVGARTARVENISVKNKPLIVLTNSGNLGGISANRNTIVIAPKTTETQIRHTIGAS-- 118
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311
+ + + +I + + G ++ EGG + +++ +D +
Sbjct: 119 ----VNVIWLDNFGDITRYSQTMGVLIAKAVKSLGFKRIVCEGGLTLIRMLLSAGAIDEL 174
Query: 312 ILYRSQI 318
+
Sbjct: 175 CISIVDK 181
>gi|163793644|ref|ZP_02187619.1| Dihydrofolate reductase [alpha proteobacterium BAL199]
gi|159181446|gb|EDP65961.1| Dihydrofolate reductase [alpha proteobacterium BAL199]
Length = 172
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ + GGA A + I+ +D++ L+ +++G G+P L + E
Sbjct: 105 QVWIVGGAETAAACISMGAIDTVELFIMPVLLG-EGVPLFLGD-GPELPLALRETR 158
>gi|118470530|ref|YP_887878.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Mycobacterium smegmatis str. MC2 155]
gi|118171817|gb|ABK72713.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Mycobacterium smegmatis str. MC2 155]
Length = 159
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 13/97 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTA-YGG--CPHAE 56
M +S D +++ + +R + ++V G + G H E
Sbjct: 1 MAISDADLKYLRRCVDLAREALDDGDE--PFGSVLVDHTGTTLFEDRNRVKDGDATAHPE 58
Query: 57 VQALEE-AGEEAR-----GATAYVTLEPCSHYGRSPP 87
A+ A AT Y + E C +
Sbjct: 59 F-AIARWAARHLTPDRRARATVYTSGEHCPMCAAAHA 94
>gi|284990464|ref|YP_003409018.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063709|gb|ADB74647.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 240
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI--PSPLEEGYLEKNFMC 340
RG+ L+ EGG A+ + + + +VD + L + ++G PL + +
Sbjct: 166 AERGLEQLVCEGGPALLTAALAAGVVDELDLTIAPALVGGPDRLLAGPLPDVVRPRLLQV 225
Query: 341 VRRDYFGSDVCLEY 354
+ D + Y
Sbjct: 226 LEEDGV---LFTRY 236
>gi|190892558|ref|YP_001979100.1| riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
gi|190697837|gb|ACE91922.1| probable riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
Length = 221
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LL +G + + + + L+D + L +++G G G
Sbjct: 126 NLLTQGSSGLLQTLLAHDLIDELRLLTFPLILGPGKRLFGAGATPEALRLTANSVSTTGV 185
Query: 349 DVCLEYIG 356
+ Y
Sbjct: 186 -IMSVYER 192
>gi|326328847|ref|ZP_08195181.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nocardioidaceae bacterium Broad-1]
gi|325953332|gb|EGD45338.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nocardioidaceae bacterium Broad-1]
Length = 162
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRG----VTAYGGCPHAE 56
++ D + L + + + ++ G + G T H E
Sbjct: 4 ELTPTDMTHLRRCLELAAEAL--ADGDGPFGSVLADSAGNALQEGRNREHTTGDPTAHPE 61
Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSP 86
++ A++ GAT Y + E C +
Sbjct: 62 IELARWAAIQLDPATRAGATVYTSGEHCPMCSAAH 96
>gi|159898606|ref|YP_001544853.1| deaminase-reductase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891645|gb|ABX04725.1| bifunctional deaminase-reductase domain protein [Herpetosiphon
aurantiacus ATCC 23779]
Length = 242
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+L+ G + ++ + RL+D + L I+ G+G PL G +
Sbjct: 163 RDMLILMGRVLWNALLVHRLIDELHLTTFPIIAGDG---IPLFNGRPPIALKLIHSRQ 217
>gi|189459481|ref|ZP_03008266.1| hypothetical protein BACCOP_00105 [Bacteroides coprocola DSM 17136]
gi|189433733|gb|EDV02718.1| hypothetical protein BACCOP_00105 [Bacteroides coprocola DSM 17136]
Length = 150
Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354
A + + I RLVD IILY ++ G G + E + C + + + + Y
Sbjct: 79 AGIINGMIRMRLVDEIILYMVPVIAGNGSR--LFQSSLPESEWTCTESKRWKDNIIRITY 136
Query: 355 IGKNLC 360
K
Sbjct: 137 GRKTPR 142
>gi|271965577|ref|YP_003339773.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptosporangium roseum DSM 43021]
gi|270508752|gb|ACZ87030.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptosporangium roseum DSM 43021]
Length = 159
Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---GCPHAEVQ-- 58
D R + + + + P ++V DG V+ H E +
Sbjct: 4 DTDLRHLRRCVELATEAL-EVGDEP-FGSVLVAADGTVLAEDHNRVASGDRTRHPEFELA 61
Query: 59 ---ALEEAGEEARGATAYVTLEPCSHY 82
A + AT Y + E C
Sbjct: 62 RWAAANMTPGDRAAATVYTSGEHCPMC 88
>gi|28493359|ref|NP_787520.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
whipplei str. Twist]
gi|28476400|gb|AAO44489.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma
whipplei str. Twist]
Length = 231
Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 6/59 (10%), Positives = 19/59 (32%)
Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
+ +I + + G ++ EGG + +++ +D + +
Sbjct: 123 WLDNFGDITRYSQTMGVLIAKAVKSLGFKRIVCEGGLTLIRMLLSAGAIDELCISIVDK 181
>gi|325107624|ref|YP_004268692.1| bifunctional deaminase-reductase-like protein [Planctomyces
brasiliensis DSM 5305]
gi|324967892|gb|ADY58670.1| bifunctional deaminase-reductase-like protein [Planctomyces
brasiliensis DSM 5305]
Length = 186
Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++ + GG + F ++ L++ +I+ + + +G G P + G
Sbjct: 115 KNIWIIGGGDLVGQFYDAGLLNELIVQVAAVTLGSGQPLLP--RQIITPPLQLTSATMHG 172
>gi|155370644|ref|YP_001426178.1| hypothetical protein FR483_N546L [Paramecium bursaria Chlorella
virus FR483]
gi|155123964|gb|ABT15831.1| hypothetical protein FR483_N546L [Paramecium bursaria Chlorella
virus FR483]
Length = 144
Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGV----------TAYGGCP---- 53
+++ A ++ + + VA L++ + + G T P
Sbjct: 8 KYLQLAEFQAQ--LFSKDESTKVAALVLDNNQNIRSTGFNGLPRGFEETTERWSKPTKYD 65
Query: 54 ---HAEVQALEEAGEE---ARGATAYVTLEPCSHY 82
HAE A+ A G T + TL PC+
Sbjct: 66 YVVHAEANAICSAARNGATLAGCTLFSTLFPCNEC 100
>gi|119960905|ref|YP_947764.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
gi|119947764|gb|ABM06675.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1]
Length = 204
Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G ++ S + + LVD L ++ G+ G + +GY + V F + L
Sbjct: 132 GSLSLCRSLLAAGLVDRYRLVVFPVITGKTGRER-IYDGYPDVALDMVDSRTFDGRLQLL 190
Query: 353 EYIGK 357
EY+ +
Sbjct: 191 EYVPR 195
>gi|327412597|emb|CBZ39518.1| cytosine deaminase [Candida dubliniensis]
gi|327412601|emb|CBZ39520.1| cytosine deaminase [Candida dubliniensis]
gi|327412603|emb|CBZ39521.1| cytosine deaminase [Candida dubliniensis]
gi|327412605|emb|CBZ39522.1| cytosine deaminase [Candida dubliniensis]
gi|327412607|emb|CBZ39523.1| cytosine deaminase [Candida dubliniensis]
gi|327412609|emb|CBZ39524.1| cytosine deaminase [Candida dubliniensis]
Length = 59
Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAY 49
++ D + + AL ++ + C+I DG V+G+G
Sbjct: 2 TMTFDDKKGLQIALDQAKKSYFEGGI--PIGSCIISSDGTVLGQGHNER 48
>gi|256786797|ref|ZP_05525228.1| DNA-binding protein [Streptomyces lividans TK24]
gi|289770689|ref|ZP_06530067.1| DNA-binding protein [Streptomyces lividans TK24]
gi|289700888|gb|EFD68317.1| DNA-binding protein [Streptomyces lividans TK24]
Length = 215
Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +F + + D L
Sbjct: 84 PQRGPWQDHEWQGWWGDEPPFRTPVFVLTHHARPSFTLSDTTFHFVDGEPATVLAQAREA 143
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG F+++ LVD++ + + + +G G
Sbjct: 144 ARGKDVRLGGGVTTVREFLDAGLVDTLHVAVAPVTLGSG 182
>gi|229820309|ref|YP_002881835.1| riboflavin biosynthesis protein RibD [Beutenbergia cavernae DSM
12333]
gi|229566222|gb|ACQ80073.1| riboflavin biosynthesis protein RibD [Beutenbergia cavernae DSM
12333]
Length = 197
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
GA + I + L+D I L+ +++ G G + + G + L Y
Sbjct: 136 GAGTGQAAIAAGLIDEIQLHVMPLLL-RDGRRLFDLPGGVPTELDLIDVRQ-GVALHLRY 193
Query: 355 IGKN 358
+
Sbjct: 194 EVRR 197
>gi|262202492|ref|YP_003273700.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262085839|gb|ACY21807.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 370
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
A +F+ + LVD + L + IV+G G
Sbjct: 158 TARAFLKAGLVDDLHLMIAPIVLGRGAR 185
>gi|226357300|ref|YP_002787040.1| cytidine/deoxycytidylate deaminase [Deinococcus deserti VCD115]
gi|226319290|gb|ACO47286.1| putative Cytidine/deoxycytidylate deaminase, zinc-binding region
(CMP/dCMP deaminase, zinc-binding) [Deinococcus deserti
VCD115]
Length = 221
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 23/113 (20%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP--------------HAEVQ 58
AL + S + +V ++G V+ RG G P HAE+
Sbjct: 21 ALSEAWEAYLHGS--YPIGACVVDREGHVLARGRN-RLGEPRRVEAGVISGHDLAHAEIN 77
Query: 59 ALEEAGEEAR----GATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDD 106
AL + R T T++PC G A +E
Sbjct: 78 ALLALTDMPRPECYSWTVLTTVQPCPQCAGAIAMSAVRAVEYAAPDPWAGCTH 130
>gi|327412599|emb|CBZ39519.1| cytosine deaminase [Candida dubliniensis]
Length = 59
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAY 49
++ D + + AL ++ + C+I DG V+G+G
Sbjct: 2 TMTFDDKKGLQIALDQAKKSYFEGGI--PIGLCIISSDGTVLGQGHNER 48
>gi|219851527|ref|YP_002465959.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
palustris E1-9c]
gi|219545786|gb|ACL16236.1| bifunctional deaminase-reductase domain protein [Methanosphaerula
palustris E1-9c]
Length = 180
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
F+N L+D I L+ +++G GIP
Sbjct: 118 SRFLNEGLIDEIQLFIVPVILG-EGIPLFTG 147
>gi|114609581|ref|XP_001172262.1| PREDICTED: hypothetical protein LOC463037 isoform 1 [Pan
troglodytes]
gi|31874632|emb|CAD98054.1| hypothetical protein [Homo sapiens]
gi|119568253|gb|EAW47868.1| deaminase domain containing 1, isoform CRA_b [Homo sapiens]
gi|193785142|dbj|BAG54295.1| unnamed protein product [Homo sapiens]
Length = 144
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 15/62 (24%)
Query: 36 VKDGIVIGRGVTA----YGGCPHAEVQALEEA-----------GEEARGATAYVTLEPCS 80
V + V+G+G HAE+ A+++ E YVT+EPC
Sbjct: 2 VYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCI 61
Query: 81 HY 82
Sbjct: 62 MC 63
>gi|300023215|ref|YP_003755826.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525036|gb|ADJ23505.1| bifunctional deaminase-reductase domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 213
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 20/171 (11%), Positives = 37/171 (21%), Gaps = 3/171 (1%)
Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLS 231
G + R + I G+ DD ++G R
Sbjct: 30 KGGEELHRWMFGTRMFNAMIGKNGGSDGIDDAYAHRSMDGFGAFILGRNMFGPVRGPWQD 89
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
K I+ L G +
Sbjct: 90 ESWKGWWGDNPPYHAPTFVLTHHPRDPIQMDGGTTFIFVTEGIEAALDQATRAAGGRDVK 149
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
+ GG ++ + L+D + S + +G+G + F
Sbjct: 150 IAGGVDTVRQYLRAGLIDEMHFALSPVALGQGEA-MFAGIDLPAQGFRVAE 199
>gi|258653663|ref|YP_003202819.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258556888|gb|ACV79830.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 219
Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 1/124 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + K V + D +
Sbjct: 77 MGRNKFGPIRGPWADEEWKGWWGDDPVFHTPVIVLTHHPRPPLEMAGGTTFHFVDADPVA 136
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L G + + GG + F+ + L+D + + I++G G LE+
Sbjct: 137 ALAQARALAGGLDVRIGGGVSTVRQFLEADLIDHLHIVVVPIILGRGERLW-DGLEGLEE 195
Query: 337 NFMC 340
F
Sbjct: 196 RFAI 199
>gi|302529528|ref|ZP_07281870.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302438423|gb|EFL10239.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 206
Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L V G + + LVD +I +V+G+G P L + + R D G
Sbjct: 132 LQVHGSGTLVRWLLEQGLVDEMIFLVIPVVVGQGERLFPRNGPDLALDLVESRVDARG 189
>gi|58271532|ref|XP_572922.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115302|ref|XP_773949.1| hypothetical protein CNBH4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256577|gb|EAL19302.1| hypothetical protein CNBH4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229181|gb|AAW45615.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
Length = 224
Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 25/99 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D +M ++ + N +IV + ++ G + H EV
Sbjct: 35 EVDLHWMRKSIEV----MPPCHFNAY-GSVIVNASNNELLCSGYNSQLEIGDPTEHGEVN 89
Query: 59 ALEEAGEEARG--------------ATAYVTLEPCSHYG 83
A+ ++ + Y T EPC G
Sbjct: 90 AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCG 128
>gi|307543864|ref|YP_003896343.1| hypothetical protein HELO_1275 [Halomonas elongata DSM 2581]
gi|307215888|emb|CBV41158.1| hypothetical protein HELO_1275 [Halomonas elongata DSM 2581]
Length = 157
Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 13/93 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQAL 60
D + + + + ++V DG V+ G H E AL
Sbjct: 4 DTDMAHLRRCVALAAEALEHGDE--PFGSVLVGADGKVLAEDRNRIAGGDSTRHPEF-AL 60
Query: 61 EE-AGEEA-----RGATAYVTLEPCSHYGRSPP 87
A E AT Y + E C +
Sbjct: 61 ARWAAENLPAESRAAATVYTSGEHCPMCAAAHA 93
>gi|315646751|ref|ZP_07899866.1| bifunctional deaminase-reductase domain protein [Paenibacillus
vortex V453]
gi|315277681|gb|EFU41005.1| bifunctional deaminase-reductase domain protein [Paenibacillus
vortex V453]
Length = 68
Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
S LVD LY +V+G G P V D G + L Y+
Sbjct: 15 SLTELGLVDEYRLYLHPVVLG-RGKPFFAGPR---PPLRLVASDRIGEQVIRLTYVP 67
>gi|294786275|ref|ZP_06751529.1| cytidine and deoxycytidylate deaminase family protein
[Parascardovia denticolens F0305]
gi|315225809|ref|ZP_07867597.1| cytidine and deoxycytidylate deaminase [Parascardovia denticolens
DSM 10105]
gi|294485108|gb|EFG32742.1| cytidine and deoxycytidylate deaminase family protein
[Parascardovia denticolens F0305]
gi|315119941|gb|EFT83073.1| cytidine and deoxycytidylate deaminase [Parascardovia denticolens
DSM 10105]
Length = 158
Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 30 SVACLIVK-DGIVIGR---GVTAYGG-CPHAEVQALEEAGE------EARGATAYVTLEP 78
V ++V G V+ + G G HAE++ + +AG G T VTLEP
Sbjct: 29 PVGAVLVDPQGKVLAQSGNGRQRGKGPLSHAEIEVM-QAGAAAWGSWNLEGCTLVVTLEP 87
Query: 79 CSHYGRSPPCAQ 90
C + A
Sbjct: 88 CPMCAGAAVSAH 99
>gi|255532280|ref|YP_003092652.1| bifunctional deaminase-reductase domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255345264|gb|ACU04590.1| bifunctional deaminase-reductase domain protein [Pedobacter
heparinus DSM 2366]
Length = 192
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ R +L+ G HS I L+D L+ + +++G GIP E +
Sbjct: 112 NEIKQREGEDILLFGSPGATHSLIRLNLIDGYWLFVNPVILG-QGIPLF-AEIKDKIKLK 169
Query: 340 CVRRDYF 346
+ F
Sbjct: 170 LLTTKQF 176
>gi|254474256|ref|ZP_05087646.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Pseudovibrio sp. JE062]
gi|211956630|gb|EEA91840.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Pseudovibrio sp. JE062]
Length = 169
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 1 MPVSSFDARF--MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCP 53
M S + M + ++ + +P C + +G ++ +
Sbjct: 1 MTESELELHHQRMRELIAYTATSLETPYPSP-FGCAVYSSEGELLAQAYDSVIKECDPTC 59
Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHY 82
H E+ A+ A E ++ G Y T EPC+
Sbjct: 60 HGEINAIRLASETSKTRSFPGGILYSTCEPCAMC 93
>gi|163848013|ref|YP_001636057.1| deaminase-reductase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222525897|ref|YP_002570368.1| bifunctional deaminase-reductase domain-containing protein
[Chloroflexus sp. Y-400-fl]
gi|163669302|gb|ABY35668.1| bifunctional deaminase-reductase domain protein [Chloroflexus
aurantiacus J-10-fl]
gi|222449776|gb|ACM54042.1| bifunctional deaminase-reductase domain protein [Chloroflexus sp.
Y-400-fl]
Length = 212
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 23/192 (11%), Positives = 45/192 (23%), Gaps = 9/192 (4%)
Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
++ + + G T +D R+
Sbjct: 29 PTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGAHIMGKRMFE 88
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
++ PV ++T + + L
Sbjct: 89 GGERGWPEEAPFH-----TPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAAGE 143
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
R + + GGA V ++N LVD + + ++ G G F R
Sbjct: 144 RDIR---ISGGANVIQQYLNLGLVDELEIALIPVIFGG-GRRLFENLHEPLPQFRIDRVL 199
Query: 345 YFGSDVCLEYIG 356
+ L Y+
Sbjct: 200 ASPTATHLRYVR 211
>gi|309774789|ref|ZP_07669811.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 3_1_53]
gi|308917474|gb|EFP63192.1| cytidine/deoxycytidylate deaminase family protein
[Erysipelotrichaceae bacterium 3_1_53]
Length = 165
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 39/96 (40%)
Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
M D ++ A ++ + +IVK+ +I G G P
Sbjct: 1 MNHERVDKINYYLDIAGTVAQRSTCRRRSY---GAVIVKNDEIISTGY---VGAPRGRTN 54
Query: 54 --------------------------HAEVQALEEA 63
HAE A+ A
Sbjct: 55 CLDLNHCIREKLQIPRGERYELCRSVHAEANAIISA 90
>gi|288918144|ref|ZP_06412500.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288350420|gb|EFC84641.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 204
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+++ G A+ + LVD + L+ +++G G +
Sbjct: 128 DVVILGSGALVRQLMEVDLVDELRLFVHPLLLGAG--KHLFGGLPAPRPLQLTSS 180
>gi|239820841|ref|YP_002948026.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus S110]
gi|239805694|gb|ACS22760.1| bifunctional deaminase-reductase domain protein [Variovorax
paradoxus S110]
Length = 218
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 35/141 (24%)
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
+ Q G + + E G K
Sbjct: 45 WQQMQKTGEANGETGIDNEMAEQGFAEMGAWILGRNMFGPVRGPWPDESWKGWWGDEPPY 104
Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304
+ V A + + + L G + V GG A ++
Sbjct: 105 HVPVFVLTHHARAPLTMRGGTTFHFVTGGIHEALALAQAAAGARDVRVGGGVATVREYLR 164
Query: 305 SRLVDSIILYRSQIVIGEGGI 325
+ L+D + L +++G+G
Sbjct: 165 AGLIDELHLAVRPVLLGKGEA 185
>gi|256423621|ref|YP_003124274.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
gi|256038529|gb|ACU62073.1| bifunctional deaminase-reductase domain protein [Chitinophaga
pinensis DSM 2588]
Length = 183
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
++ + + L+D L ++ G+G P + F
Sbjct: 122 SMLPELVKAGLIDEFYLVIHPVIAGQGRHLFPAGSLHELVQLKLTETKTF 171
>gi|284030704|ref|YP_003380635.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283809997|gb|ADB31836.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 180
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351
V G + + S + ++++D + L I +G G L + V F + V
Sbjct: 117 VVGSSTLVRSLLRAKVLDELHLLVHPIAVGHGAR---LFDEGETVPLELVSATTFATGVL 173
Query: 352 LEYIGK 357
Sbjct: 174 HTVYRP 179
>gi|72162124|ref|YP_289781.1| hypothetical protein Tfu_1723 [Thermobifida fusca YX]
gi|71915856|gb|AAZ55758.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 163
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG---GCPHAEVQ-- 58
D R + + + + ++V DG V+ H E
Sbjct: 4 ETDVRHLRRCVELAAQALEAGDE--PFGSVLVAGDGTVLAEDHNRVASGDRTRHPEFALA 61
Query: 59 --ALEEAGEEAR-GATAYVTLEPCSHY 82
A+ R AT Y + E C
Sbjct: 62 RWAVRNLTPNERAEATVYTSGEHCPMC 88
>gi|183220633|ref|YP_001838629.1| putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910736|ref|YP_001962291.1| dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775412|gb|ABZ93713.1| Dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779055|gb|ABZ97353.1| Putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 184
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+ +DDP L + ++ I + ++KL + + + + GG +A
Sbjct: 69 PWMDHYLISDDPNLKYSEQEITIVRPFEVKSTIQKLRKMETNKNI---YLCGGGNLAGLL 125
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKNL 359
+D + L + I++ GI E+ E V+ F S + LEY K L
Sbjct: 126 WQLDEIDRLFLKVNPIIL-SNGIHLF-EQIDTETKLEFVKLKQFESGVILLEYQRKRL 181
>gi|312141846|ref|YP_004009182.1| hypothetical protein REQ_45470 [Rhodococcus equi 103S]
gi|325672891|ref|ZP_08152585.1| dihydrofolate reductase [Rhodococcus equi ATCC 33707]
gi|311891185|emb|CBH50504.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325556144|gb|EGD25812.1| dihydrofolate reductase [Rhodococcus equi ATCC 33707]
Length = 188
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + GG +A ++ +D +++ R ++ G GIP Y F V F S
Sbjct: 121 DIWLCGGGVLASLLVDE--IDRLVVKRHPVLFG-NGIPMFAPGTYRPGRFDAVDTRSFES 177
Query: 349 DV-CLEYIGKN 358
V EY +
Sbjct: 178 GVAVTEYARRR 188
>gi|220906868|ref|YP_002482179.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425]
gi|219863479|gb|ACL43818.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425]
Length = 150
Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 10 FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63
+ L +R G VA L++ ++ HAE+ L +A
Sbjct: 1 MIDRVLELARSAIAQGKAG----VAALMLWRDEILAFDHNQAVDTGDLTAHAEMVVLRQA 56
Query: 64 GEEARGA--------TAYVTLEPCSHY 82
T YVTLEPC
Sbjct: 57 SSRLSQMSDAEKAEITLYVTLEPCLMC 83
>gi|182413186|ref|YP_001818252.1| deaminase-reductase domain-containing protein [Opitutus terrae
PB90-1]
gi|177840400|gb|ACB74652.1| bifunctional deaminase-reductase domain protein [Opitutus terrae
PB90-1]
Length = 199
Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
++ + GG++V + L D + I++G G+P + + +
Sbjct: 118 FRNIWLVGGSSVCGECLRRGLADEVRYSILPILLG-EGLP-FFDRLDGDVALHLQEVKAY 175
Query: 347 GSDVC-LEYIGK 357
+ L Y+ +
Sbjct: 176 KNGTLALRYVVR 187
>gi|218514272|ref|ZP_03511112.1| putative riboflavin biosynthesis reductase protein [Rhizobium etli
8C-3]
Length = 56
Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
A S + L+D I+Y +V+G G P + D + + L Y+
Sbjct: 1 ARSLTDLGLIDEYIIYLHPVVLGH-GKPYFTGPR---PPLRLIANDRIDENVIRLVYVP 55
>gi|167750332|ref|ZP_02422459.1| hypothetical protein EUBSIR_01306 [Eubacterium siraeum DSM 15702]
gi|167656692|gb|EDS00822.1| hypothetical protein EUBSIR_01306 [Eubacterium siraeum DSM 15702]
gi|291529903|emb|CBK95488.1| Deoxycytidylate deaminase [Eubacterium siraeum 70/3]
gi|291556408|emb|CBL33525.1| Deoxycytidylate deaminase [Eubacterium siraeum V10Sc8a]
Length = 163
Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 38/142 (26%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53
M ++ A T + +IV + +I G G P
Sbjct: 1 MERRDKINYYLDIAETVCERG---TCLRRNFGAIIVHNDEIIATGY---NGAPRGLKNCS 54
Query: 54 ------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPC 88
HAE + A + G++ ++ + G
Sbjct: 55 DLGICTREKLNVPKGQRYELCRSVHAEANCIISASRTDMIGSSLFLACHDMTSGGTLCGE 114
Query: 89 AQFIIECGIRRVVVCVDDPDVR 110
+ C + + D +R
Sbjct: 115 VEPCSMCKRLIINAGIKDVFIR 136
>gi|257067604|ref|YP_003153859.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
faecium DSM 4810]
gi|256558422|gb|ACU84269.1| pyrimidine reductase, riboflavin biosynthesis [Brachybacterium
faecium DSM 4810]
Length = 246
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCV 341
V +++ GG + S + L D I L GE S E + F
Sbjct: 164 VEEIILGGGGTLNWSMVRDGLCDEISLVLMPTADGENHTHSLFEANQKHSAPVPIAFSLT 223
Query: 342 RRDYFGSD-VCLEY 354
+ V L Y
Sbjct: 224 SAEPLEDGSVWLRY 237
>gi|182438278|ref|YP_001825997.1| hypothetical protein SGR_4485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778929|ref|ZP_08238194.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
gi|178466794|dbj|BAG21314.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326659262|gb|EGE44108.1| bifunctional deaminase-reductase domain protein [Streptomyces cf.
griseus XylebKG-1]
Length = 190
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG + S ++ L+D L +++G G + + V +
Sbjct: 118 EGGPIIVHGSTELNRSLADADLIDRYHLLVFPLLLGA-GKRLFSDTDKDAQKLRLVEHEA 176
Query: 346 FGSDV 350
+ + +
Sbjct: 177 YANGI 181
>gi|160898853|ref|YP_001564435.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1]
gi|160364437|gb|ABX36050.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1]
Length = 144
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 25/97 (25%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGG--------- 51
++ D +F+++A + + + V + V + V G
Sbjct: 2 INQTDRKFLASA--EAIGQIWSKDPSTRVGAVAVGNTKNQV-AFGYNGLPPGIADTDERL 58
Query: 52 ---------CPHAEVQALEEAGEEARGATAYVTLEPC 79
HAE AL A R T YVT PC
Sbjct: 59 QNRDLKLSLTLHAEENALANASFVVR--TVYVTHHPC 93
>gi|284990831|ref|YP_003409385.1| bifunctional deaminase-reductase domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284064076|gb|ADB75014.1| bifunctional deaminase-reductase domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 213
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 30/99 (30%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P ++ D + + + D + L
Sbjct: 82 PPGWQDDADWRGWWGPNPPFHTPTFVLTHRPRSPIEMAGGTTFHFLDASPAEALDVAREA 141
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GG VA FI + LVD + L + IV+G G
Sbjct: 142 AAGQDVRIGGGPTVARDFIAAGLVDHVHLVQVPIVLGRG 180
>gi|260905893|ref|ZP_05914215.1| hypothetical protein BlinB_11211 [Brevibacterium linens BL2]
Length = 216
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 28/124 (22%), Gaps = 1/124 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + + + D
Sbjct: 74 MGRKKFGPQQGPWPDDGWRGWWGEEPPFKTPCFVLTHHPRESMEFPNGTSFHFVDDTPEA 133
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + + + GG + F+ + L+D + + I +G G+ +E
Sbjct: 134 ALSQAVDAANGLDVRIGGGPSTIRQFLAADLIDFMHVAIVPITLG-TGVSLWEGISGIED 192
Query: 337 NFMC 340
F
Sbjct: 193 RFTI 196
>gi|328777317|ref|XP_003249314.1| PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like
[Apis mellifera]
Length = 389
Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 8 ARFMSAALRFSR-WHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCP--HAEVQALEE 62
R+M A++ ++ VG + N S +IV DG ++ + P HA + A++
Sbjct: 174 ERYMKVAVQAAKLEAVGDQNCNGS--AVIVDPEDGRILAIAASKIDQHPMWHAAMLAVDL 231
Query: 63 AGEEARGATAYVTLE 77
+ +Y T E
Sbjct: 232 VAKLQEKIESYATRE 246
>gi|229820226|ref|YP_002881752.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229566139|gb|ACQ79990.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 187
Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ V G +A + LVD I L +++G G + + + ++ +G
Sbjct: 120 ISVAGSIQLAQGLLAHDLVDEIHLMAFPVILGHG--RTLWTQTPDKSDWSLTEATTYGDG 177
Query: 350 VCLE 353
V +
Sbjct: 178 VLVT 181
>gi|226307387|ref|YP_002767347.1| hypothetical protein RER_39000 [Rhodococcus erythropolis PR4]
gi|226186504|dbj|BAH34608.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 212
Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L V G + + + LVD +IL +V+G+G P + R G
Sbjct: 132 LQVHGSGELCRWLLANDLVDEMILLIVPVVVGQGTRLFPDTGPDIALELAESRATPKG 189
>gi|297191003|ref|ZP_06908401.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|197721471|gb|EDY65379.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 208
Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
G +A + + LVD + L +V+G+G P EG F + G
Sbjct: 138 GSGKLAQTLMAHDLVDKLHLVVFPVVLGKGMRLFP--EGATPTAFKHIEARTTG 189
>gi|296532916|ref|ZP_06895577.1| riboflavin biosynthesis protein RibD domain protein [Roseomonas
cervicalis ATCC 49957]
gi|296266746|gb|EFH12710.1| riboflavin biosynthesis protein RibD domain protein [Roseomonas
cervicalis ATCC 49957]
Length = 78
Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 308 VDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
VD + + + +IG G P+ PLE + G+D+ EY
Sbjct: 19 VDRLAWFHAPAIIGGDGRPALDALPLELLSAMPRYRRTALALPGADLFSEY 69
>gi|84495552|ref|ZP_00994671.1| hypothetical protein JNB_12139 [Janibacter sp. HTCC2649]
gi|84385045|gb|EAQ00925.1| hypothetical protein JNB_12139 [Janibacter sp. HTCC2649]
Length = 197
Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
G V + + + LVD ++L++ +++G G P +E + L Y
Sbjct: 136 GGGVVTTALAAGLVDELVLHQVPVLLGA-GRPYF-QELPHHIRLRLIEAVPAPGVTHLHY 193
Query: 355 IGKN 358
+N
Sbjct: 194 AVEN 197
>gi|226286631|gb|EEH42144.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 256
Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 25/134 (18%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-----------------------VKDGIVIG 43
++ A L S+ TN V ++ ++
Sbjct: 23 HLYYLRACLSLSQQSPPK-PTNFRVGAILLSRMPTTMPTNPPNQPQSHTPPATYTDTILS 81
Query: 44 RGVT-AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
G T G HAE AL + + +V S + + ++
Sbjct: 82 TGYTLELPGNTHAEQCALAKYAARHGISEEHVGDVLPPPPPSSASSQFHTTDPPRPQSII 141
Query: 103 CVDDPDVRVSGRGL 116
R + G
Sbjct: 142 LYTRTSSRQNNTGP 155
>gi|298251828|ref|ZP_06975631.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297546420|gb|EFH80288.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 194
Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
T L++ G + S + + LVD+ +L +V+G G P + R G
Sbjct: 122 TDLVIMGSGELVQSLMQANLVDTYVLLIHPLVLGSGRRLFPEGGAAATLQLVGTRTTSTG 181
Query: 348 SDVCLEY 354
V + Y
Sbjct: 182 V-VIVTY 187
>gi|294632683|ref|ZP_06711242.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
gi|292830464|gb|EFF88814.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
Length = 212
Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLE 335
V G +A + + LVD L ++IG G IP+ LE +
Sbjct: 140 VVGSGDLAQTLMRHGLVDEYRLTIHPVIIGTGKRLFAGGAIPTALEPVGVS 190
>gi|84497703|ref|ZP_00996525.1| hypothetical protein JNB_15953 [Janibacter sp. HTCC2649]
gi|84382591|gb|EAP98473.1| hypothetical protein JNB_15953 [Janibacter sp. HTCC2649]
Length = 204
Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ G +V S I++ LVD + + G G ++ Y + V F
Sbjct: 113 RPMHTLGSLSVCRSLISAGLVDRFRVVIFPFITGATGRERIFDD-YPDLGLELVEHQTFA 171
Query: 348 SDV-CLEYIG 356
+ LEY+
Sbjct: 172 PGLQLLEYVP 181
>gi|331695665|ref|YP_004331904.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326950354|gb|AEA24051.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 216
Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 1/119 (0%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P + V L + + D + L
Sbjct: 79 PPAGDRPDGWRGWWGEEPPFRTPVFVMTHESLPPIEFANGTSFHFVDGPPHEVLRLAREA 138
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG + F+ + LVD + L I +G G+ E F
Sbjct: 139 AGGLDVRLGGGPSTVRQFLQADLVDFMHLVTVPITLG-RGVSLWDGVSGTEGRFTVESV 196
>gi|325284533|ref|YP_004257072.1| bifunctional deaminase-reductase domain-containing protein
[Deinococcus proteolyticus MRP]
gi|324316707|gb|ADY27818.1| bifunctional deaminase-reductase domain protein [Deinococcus
proteolyticus MRP]
Length = 187
Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+LL L GV + +GG V FI + ++ + L +++G G P +
Sbjct: 97 ELLRQLEAEGVRRVYADGG-QVVQEFIRAGRLNELTLTTVPVLLG-RGRPLF-GAVGEDV 153
Query: 337 NFMCVRRDYF 346
+ F
Sbjct: 154 PLELLESRSF 163
>gi|226362571|ref|YP_002780349.1| hypothetical protein ROP_31570 [Rhodococcus opacus B4]
gi|226241056|dbj|BAH51404.1| hypothetical protein [Rhodococcus opacus B4]
Length = 206
Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L V G + + + L+D + +V+G+G P L+ + + R D G
Sbjct: 132 LQVHGSGTLTRWLLENDLIDEMTHIVVPVVLGQGARLFPEAGPDLQLDLIESRVDSKG 189
>gi|157413307|ref|YP_001484173.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9215]
gi|157387882|gb|ABV50587.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9215]
Length = 171
Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 39 GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
G IGRGV HAE+ AL +A T LEPC+
Sbjct: 53 GRCIGRGVNRRNINKDPLGHAEIMALRQASLIKNDWRFNECTIITNLEPCTMCS 106
>gi|288920358|ref|ZP_06414669.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
gi|288348235|gb|EFC82501.1| bifunctional deaminase-reductase domain protein [Frankia sp. EUN1f]
Length = 206
Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 2/119 (1%)
Query: 228 FKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
K D+ AP V R + + L G
Sbjct: 75 GKRMFDAGEHAWPAEAPFHTPVFVLTHERRDPWERPGGTTFHFVNDGIKPALDQAREAAG 134
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ + GG A ++N+ LVD + S ++ G GI VR +
Sbjct: 135 DRDVRIAGGGATILEYVNAGLVDEFTIALSPVLFGS-GIRLFEGVDAGRVALEPVRAEP 192
>gi|21229547|ref|NP_635464.1| hypothetical protein XCC0069 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766420|ref|YP_241182.1| hypothetical protein XC_0070 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111014|gb|AAM39388.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571752|gb|AAY47162.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 208
Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GGAA A S I L D +L I++G+ G+P + + V F
Sbjct: 146 GGAAFARSLIAHNLADEYVLGVYPILLGK-GVP-IFNDLPAPRPLTLVSTHTF 196
>gi|251796204|ref|YP_003010935.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
gi|247543830|gb|ACT00849.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2]
Length = 176
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 29/121 (23%), Gaps = 40/121 (33%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA------------- 48
+D FM A S V ++V+ ++G
Sbjct: 8 SRKDWDTYFMDIAYMVSTRSRCSRRH---VGSVLVQGKKLLGTAYNGAPMGVQDCSEAGC 64
Query: 49 --------YGGCP---------------HAEVQALE-EAGEEARGATAYVTLEPCSHYGR 84
G HAE L + G+T YVT +PC
Sbjct: 65 MITEEWETRIGDNGQEHMVKKQRCIRTIHAEQNLLLFTDRADREGSTVYVTDQPCWTCAN 124
Query: 85 S 85
Sbjct: 125 M 125
>gi|260905848|ref|ZP_05914170.1| bifunctional deaminase-reductase domain protein [Brevibacterium
linens BL2]
Length = 186
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-G 347
++ V+G +V +++ L+D + L +V G G + +G K
Sbjct: 118 NIAVQGSLSVVSQLLDAELIDELTLAIHPVVAGSGR---GIFDGNAPKRLSLTDVQRTSK 174
Query: 348 SDVCLEYIGK 357
++ + Y +
Sbjct: 175 GNLLVTYAPR 184
>gi|56697818|ref|YP_168189.1| cytidine and deoxycytidylate deaminase family protein [Ruegeria
pomeroyi DSS-3]
gi|56679555|gb|AAV96221.1| cytidine and deoxycytidylate deaminase family protein [Ruegeria
pomeroyi DSS-3]
Length = 159
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
V +IV DG V+ HAE+ AL A E G YVTLEP
Sbjct: 24 PVGAVIVAPDGRVVAAAGNRTRETCDPTAHAEIVALRAACAAAGSERLVGHDLYVTLEP 82
>gi|294814942|ref|ZP_06773585.1| Dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
gi|294327541|gb|EFG09184.1| Dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
Length = 241
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA +A + VD ++L +V+G G+P ++ +F F +
Sbjct: 176 IYLCGGANLAGQLRDE--VDELVLKTYPVVLGS-GMPMFDSGFQVD-DFALDSLRAFDNG 231
Query: 350 VCLEYIGKN 358
V + +
Sbjct: 232 VVVRTYRRE 240
>gi|291007893|ref|ZP_06565866.1| deaminase-reductase domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 197
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
L VE G +A S + LVD I L +V+G G +P+ R F +
Sbjct: 132 DLTVE-GPTLARSALRLGLVDVIELLICPVVVGAG---TPVLPDGFRTALSLTRERRFSN 187
Query: 349 D-VCLEY 354
V L Y
Sbjct: 188 GMVQLTY 194
>gi|326446082|ref|ZP_08220816.1| hypothetical protein SclaA2_33677 [Streptomyces clavuligerus ATCC
27064]
Length = 190
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG ++ + ++ L+D L +++G G + V +
Sbjct: 118 EGGPIILHGSASLNRALSDAGLIDRYHLLVHPLLLGA-GKRLFSTSDRDAQKLELVEHEV 176
Query: 346 FGS 348
+ +
Sbjct: 177 YAN 179
>gi|294817599|ref|ZP_06776241.1| Bifunctional deaminase-reductase domain protein [Streptomyces
clavuligerus ATCC 27064]
gi|209967537|gb|ACJ02379.1| hypothetical protein [Streptomyces clavuligerus]
gi|294322414|gb|EFG04549.1| Bifunctional deaminase-reductase domain protein [Streptomyces
clavuligerus ATCC 27064]
Length = 200
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG ++ + ++ L+D L +++G G + V +
Sbjct: 128 EGGPIILHGSASLNRALSDAGLIDRYHLLVHPLLLGA-GKRLFSTSDRDAQKLELVEHEV 186
Query: 346 FGS 348
+ +
Sbjct: 187 YAN 189
>gi|254389006|ref|ZP_05004237.1| dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
gi|326443313|ref|ZP_08218047.1| hypothetical protein SclaA2_19708 [Streptomyces clavuligerus ATCC
27064]
gi|197702724|gb|EDY48536.1| dihydrofolate reductase [Streptomyces clavuligerus ATCC 27064]
Length = 193
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GGA +A + VD ++L +V+G G+P ++ +F F +
Sbjct: 128 IYLCGGANLAGQLRDE--VDELVLKTYPVVLGS-GMPMFDSGFQVD-DFALDSLRAFDNG 183
Query: 350 VCLEYIGKN 358
V + +
Sbjct: 184 VVVRTYRRE 192
>gi|254388055|ref|ZP_05003292.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|197701779|gb|EDY47591.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 207
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG ++ + ++ L+D L +++G G + V +
Sbjct: 135 EGGPIILHGSASLNRALSDAGLIDRYHLLVHPLLLGA-GKRLFSTSDRDAQKLELVEHEV 193
Query: 346 FGS 348
+ +
Sbjct: 194 YAN 196
>gi|134100260|ref|YP_001105921.1| deaminase-reductase domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133912883|emb|CAM02996.1| bifunctional deaminase-reductase domain protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 185
Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
L VE G +A S + LVD I L +V+G G +P+ R F +
Sbjct: 120 DLTVE-GPTLARSALRLGLVDVIELLICPVVVGAG---TPVLPDGFRTALSLTRERRFSN 175
Query: 349 D-VCLEY 354
V L Y
Sbjct: 176 GMVQLTY 182
>gi|310643093|ref|YP_003947851.1| cmp/dcmp deaminase, zinc-binding protein [Paenibacillus polymyxa
SC2]
gi|309248043|gb|ADO57610.1| CMP/dCMP deaminase, zinc-binding protein [Paenibacillus polymyxa
SC2]
Length = 172
Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 29/117 (24%), Gaps = 39/117 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----------------- 47
+D FM A S V ++V+ ++G
Sbjct: 8 DWDTYFMDIAYMVSTRSRCARR---HVGAVLVQGKKLLGTAYNGAPSGVPDCSEAGCMIS 64
Query: 48 ------AYGGCP------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
G HAE L + G++ YVT +PC
Sbjct: 65 EEYEVVHRDGREEMVKKQRCIRTIHAEQNLLLFTDRIDREGSSVYVTDQPCWTCANM 121
>gi|298244121|ref|ZP_06967927.1| CMP/dCMP deaminase zinc-binding [Ktedonobacter racemifer DSM
44963]
gi|297551602|gb|EFH85467.1| CMP/dCMP deaminase zinc-binding [Ktedonobacter racemifer DSM
44963]
Length = 170
Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVA--CLIVKDGIVIGRGVTA----YGGCPHA 55
+SS D + M+ L ++ + S V L+ + ++ HA
Sbjct: 7 SISSVDEKMMARTLAYANAALDKGS----VGIAALLSRRDEILDLEHNQFQETRDAIDHA 62
Query: 56 EVQALEE--------AGEEARGATAYVTLEPCSHY 82
E+ L + EE R T Y +LEPC
Sbjct: 63 EMVVLRRMARYLSQLSEEEKRELTLYSSLEPCLMC 97
>gi|330506583|ref|YP_004383011.1| cytosine deaminase [Methanosaeta concilii GP-6]
gi|328927391|gb|AEB67193.1| cytosine deaminase [Methanosaeta concilii GP-6]
Length = 154
Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEEA-- 63
FM AAL +R + ++V++ G R V HAE+ L A
Sbjct: 4 FMQAALDEARKGSREGGI--PIGAVLVEEGRIIGRGRNRRVQQRDQMMHAEIDCLRNARL 61
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
A Y TL PC CA ++ GI++VVV + R + ++ G
Sbjct: 62 TGGYHNAVLYTTLMPCY------MCAGAVVYFGIKKVVVG----EARSAPAARDFMQAHG 111
Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKR 149
I V + +E ++ + Y++ ++
Sbjct: 112 IEVVDLDWAECRMLMEEYISMNRKQW 137
>gi|229512710|ref|ZP_04402178.1| hypothetical protein VCB_000353 [Vibrio cholerae TMA 21]
gi|229350220|gb|EEO15172.1| hypothetical protein VCB_000353 [Vibrio cholerae TMA 21]
Length = 496
Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGC 52
+FD M A S L+ V ++ KD +I G G
Sbjct: 221 TFDEYAMFMAFSSSLRSADLSR---QVGAVVAKDEQIIATGANDVPRAGG 267
>gi|256826275|ref|YP_003150235.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
gi|256689668|gb|ACV07470.1| dihydrofolate reductase [Kytococcus sedentarius DSM 20547]
Length = 193
Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V GG +A F ++ L+D++ +++ + +G G
Sbjct: 119 GEKDVWVMGGGDLAGQFADAGLLDTVWVHQVPVTLGAG 156
>gi|119715379|ref|YP_922344.1| guanine deaminase [Nocardioides sp. JS614]
gi|119536040|gb|ABL80657.1| Guanine deaminase [Nocardioides sp. JS614]
Length = 158
Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 50 GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV A+ +A G Y + EPC
Sbjct: 51 DPTAHAEVTAIRQACAALGDFSLTGCVLYASCEPCPLC 88
>gi|254525362|ref|ZP_05137414.1| cytosine/adenosine deaminase [Prochlorococcus marinus str. MIT
9202]
gi|221536786|gb|EEE39239.1| cytosine/adenosine deaminase [Prochlorococcus marinus str. MIT
9202]
Length = 171
Score = 39.9 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 39 GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
G IGRGV HAE+ AL +A T LEPC+
Sbjct: 53 GRCIGRGVNRRNINKDPLGHAEIMALRQASLIKNDWRFNECTIITNLEPCTMCS 106
>gi|134096905|ref|YP_001102566.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Saccharopolyspora erythraea NRRL 2338]
gi|291006653|ref|ZP_06564626.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Saccharopolyspora erythraea NRRL 2338]
gi|133909528|emb|CAL99640.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Saccharopolyspora erythraea NRRL 2338]
Length = 159
Score = 39.9 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAE- 56
++ D R + A+ S L+V DG V+ T H E
Sbjct: 1 MTDDDLRHLRRAIELSARARESGDE--PFGSLLVGPDGAVLAEDVNTVRTDRDISAHPEL 58
Query: 57 ---VQALEEAGEEARGA-TAYVTLEPCSHYG 83
V A A T Y + E C+
Sbjct: 59 KLAVWAARHLDPATSAATTMYTSCENCAMCS 89
>gi|300113775|ref|YP_003760350.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
gi|299539712|gb|ADJ28029.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii
C-113]
Length = 159
Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---GCPHAEVQ 58
+ D +++ + + + ++V DG V+ H E +
Sbjct: 2 IKDSDMQYLRRCVELAAKALESGDE--PFGSVLVAADGKVLFEDRNRVASGDRTRHPEFE 59
Query: 59 -----ALEEAGEEARGATAYVTLEPCSHY 82
A + E AT Y + E C
Sbjct: 60 IARWAAANMSPEARVAATVYTSGEHCPMC 88
>gi|254283965|ref|ZP_04958933.1| cytosine deaminase [gamma proteobacterium NOR51-B]
gi|219680168|gb|EED36517.1| cytosine deaminase [gamma proteobacterium NOR51-B]
Length = 137
Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 30 SVACLIVK--DGIVIGRGVT----AYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHY 82
+ +IV ++G+G H E A+ EAG + TL PC
Sbjct: 11 PIGAVIVDRVTREIVGKGHNTLVQENYPYNHRETAAIREAGHIDFSRCVLVTTLSPCDIC 70
Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
R QF ++ +R
Sbjct: 71 ARLIIMRQFPHPIVGDVTNAKGNEQLLRDH 100
>gi|237785635|ref|YP_002906340.1| putative riboflavin specific deaminase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758547|gb|ACR17797.1| putative riboflavin specific deaminase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 300
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+ + + + EGG S I SR +D +IL
Sbjct: 205 HIRQWLSDRYSVVDCEGGPRFLGSLIASRAIDEVILTIHP 244
>gi|221119785|ref|XP_002165632.1| PREDICTED: similar to nuclear transcription factor, X-box
binding-like 1 [Hydra magnipapillata]
Length = 1251
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 43/222 (19%), Gaps = 13/222 (5%)
Query: 75 TLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
PC G + + + +V G + E
Sbjct: 225 DCSPCPKMGNYFCFCKKVQDVRPCAEKNWSCKQICHKVLSCGHHLCEK---------ECH 275
Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
+ + T D++ ++ + +A
Sbjct: 276 STPCGDCPRSGSRKCPCGKTFFSLPCLDDVTPCKDICLKQLSCGAHQCYNRCHYGPCEAC 335
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
V + + + K + +
Sbjct: 336 ---NQVVRKTCKCGRKTKDTPCSQTLTCEFKCTKLRKCGRHPCKKKCCDGNCRPCDQLCN 392
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+L K C + G+TS+LV+ G
Sbjct: 393 RLLNCNNHKCLSPCHSGKCYPCPLRKGVSCFCGITSILVQCG 434
>gi|118468566|ref|YP_890993.1| hypothetical protein MSMEG_6786 [Mycobacterium smegmatis str. MC2
155]
gi|118169853|gb|ABK70749.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 199
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ + + + LVD + + +V G+ G P+ G + + + G L
Sbjct: 124 GSLSMNRALMAAGLVDYLQVTIFPVVTGQTG-DDPILRGAADFDLELIETRTLDGRTQEL 182
Query: 353 EYIG 356
Y
Sbjct: 183 TYRP 186
>gi|322694880|gb|EFY86699.1| nucleoside deaminase [Metarhizium acridum CQMa 102]
Length = 252
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 24/105 (22%), Gaps = 34/105 (32%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPS----VACLIVKD-----GIVIGRGVT---AYGGCPHA 55
+M A + + NP +IV G ++ G + H
Sbjct: 41 HYWMRRA----NAALFEVTGNPCPTQAFGTVIVNHTAGGLGELVCIGANDVASGNPTLHG 96
Query: 56 EVQALEEAGEEAR------------------GATAYVTLEPCSHY 82
E A+ T Y EPC
Sbjct: 97 ETAAITNCSAILTDPNGPYKLSGHEALKAWADLTLYTNAEPCPMC 141
>gi|254995140|ref|ZP_05277330.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Mississippi]
gi|255003311|ref|ZP_05278275.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Puerto Rico]
gi|255004436|ref|ZP_05279237.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Virginia]
Length = 153
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEAG 64
+M A++ + V ++V + V+ HAE+ A+ EA
Sbjct: 8 YMRLAMQEAVSSPAEV----PVGAVVVDERGVVVSSRHNLTLRNSDPTAHAEMLAIREAC 63
Query: 65 -----EEARGATAYVTLEPCSHYGR 84
YVTLEPC+
Sbjct: 64 LHLSTHVLDNCDMYVTLEPCAMCAY 88
>gi|84497379|ref|ZP_00996201.1| putative secreted protein [Janibacter sp. HTCC2649]
gi|84382267|gb|EAP98149.1| putative secreted protein [Janibacter sp. HTCC2649]
Length = 182
Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
G A + + LVD + L IV+G G + + V F
Sbjct: 119 GSATLVRWMLEQGLVDELHLLVHPIVVGS-GKKLFADGASVP--LSLVSSTTF 168
>gi|302526927|ref|ZP_07279269.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302435822|gb|EFL07638.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 212
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 57/205 (27%), Gaps = 9/205 (4%)
Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211
T +++S D + G G A +
Sbjct: 14 TTCHMSMSLDGFVAGPGQSRDQPLGRRGLELHGWHIGDPRATDADKTASGWLMRPRGAYV 73
Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271
G P+R D + + APV ++T + + + +
Sbjct: 74 MGRNMFGPVRGEWDEDW---SGWWGAEPPYHAPVFVLTHHAHEPIEMEGGTTFYFVTDGF 130
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+GV + GGA+ +N+ ++D + L + +++G G E
Sbjct: 131 DAAYAAAREAAGDKGVD---IAGGASTVRQALNAGVIDELTLDITPVLLGSGERMF---E 184
Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIG 356
G F V + + Y
Sbjct: 185 GVESFGFEPVEVLHSPLTTHIRYRR 209
>gi|157953436|ref|YP_001498327.1| hypothetical protein AR158_C246R [Paramecium bursaria Chlorella
virus AR158]
gi|156068084|gb|ABU43791.1| hypothetical protein AR158_C246R [Paramecium bursaria Chlorella
virus AR158]
Length = 119
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 14/124 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---AYGGC--PHAEV 57
++ D +S A+ + G N C+I+ +I G G HAE+
Sbjct: 1 MTRLDEA-VSIAINQANRSTG----NFRHGCVILSGKKIIAEGHNHMRRDIGTFSVHAEM 55
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
L + + Y L+ + C + + + V
Sbjct: 56 DGL----WKIYDSDLYDNLKAVIIRVTTTGKLANSRPCEMCMAALRQHKIETIVYSTACG 111
Query: 118 WLSQ 121
L
Sbjct: 112 RLKM 115
>gi|123968475|ref|YP_001009333.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. AS9601]
gi|123198585|gb|ABM70226.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. AS9601]
Length = 145
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 39 GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHYG 83
G IGRGV + HAE+ AL +A T LEPC+
Sbjct: 27 GRCIGRGVNSRNINKDPLGHAEIMALRQASLIKNDWRFNECTIITNLEPCTMCS 80
>gi|90418574|ref|ZP_01226486.1| putative bifunctional deaminase-reductase [Aurantimonas
manganoxydans SI85-9A1]
gi|90338246|gb|EAS51897.1| putative bifunctional deaminase-reductase [Aurantimonas
manganoxydans SI85-9A1]
Length = 201
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
L+V+G + + +++ LVD + L +++G G P +
Sbjct: 124 LIVQGSTTLYPALLSAGLVDRLYLITFPLILGRGKRALPGADPG 167
>gi|23928436|gb|AAN40022.1| putative cytidine deaminase [Zea mays]
Length = 180
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 32/98 (32%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC---------------LIVKDGIVIGRGVTAY 49
D +F++ A+ + V P ++ +
Sbjct: 23 DRDHKFLTKAVEEAYRGVDCGDEGP-FGAVVVRNDEVVVSCHNMVLKHTDPI-------- 73
Query: 50 GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAEV A+ EA ++ Y + EPC
Sbjct: 74 ---AHAEVTAIREACKKLGKIELSDCEIYASCEPCPMC 108
>gi|256823992|ref|YP_003147952.1| cytosine/adenosine deaminase [Kytococcus sedentarius DSM 20547]
gi|256687385|gb|ACV05187.1| cytosine/adenosine deaminase [Kytococcus sedentarius DSM 20547]
Length = 175
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 29 PSVACLIVKDGIVIGR-GVTAYG--GCP--HAEVQALEEAG-----EEARGATAYVTLEP 78
P V ++ DG ++ GV G P HAEV A+ +A + G T T EP
Sbjct: 29 PFVGVVVNADGEMLSEFGVNQVAETGDPMAHAEVVAMRDAMTRHGLDSLTGYTLLATGEP 88
Query: 79 CSHY 82
C
Sbjct: 89 CGLC 92
>gi|284030102|ref|YP_003380033.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283809395|gb|ADB31234.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 185
Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
GGA + + I L D I L+ + IG G
Sbjct: 123 GGATLVSALIAEGLADDIHLFVNPTAIGTG 152
>gi|58177055|pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 48/206 (23%), Gaps = 75/206 (36%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC------- 52
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCDYA 53
Query: 53 ---------------------------------------PH----------AEVQALEEA 63
H AE+ A+ A
Sbjct: 54 AEQGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFA 113
Query: 64 GEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
E GAT YVTL PC ++ + + + L
Sbjct: 114 AENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNKPGWDDILR 165
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV 146
GI V + + +
Sbjct: 166 NAGIEVFNVPKKNLNKLNWENINEFC 191
>gi|118397|sp|P00814|DCTD_BPT2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase
Length = 188
Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 45/188 (23%), Gaps = 75/188 (39%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC------- 52
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCDNYA 53
Query: 53 ---------------------------------------PH----------AEVQALEEA 63
H AE+ A+ A
Sbjct: 54 AIEGWLLNKPKHTIIQGHKPECVSFGTSDRFVLAKEHRSAHSEWSSKNEIHAELNAILFA 113
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT YVTL PC ++ + + + L
Sbjct: 114 ARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNKPGWDDILR 165
Query: 121 QKGIIVDR 128
GI V
Sbjct: 166 NAGIEVFN 173
>gi|152966031|ref|YP_001361815.1| cytosine deaminase [Kineococcus radiotolerans SRS30216]
gi|151360548|gb|ABS03551.1| Cytosine deaminase [Kineococcus radiotolerans SRS30216]
Length = 165
Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
R + AL +R + + DG ++G G H E A A
Sbjct: 21 RLLDVALEQARAGAAEGGV--PIGAALFTLDGTLLGAGRNRRVQDDDPSVHGETDAFRNA 78
Query: 64 GEEA--RGATAYVTLEPCSHYG 83
G A R TL PC +
Sbjct: 79 GRRASYRHTVMVTTLSPCWYCS 100
>gi|325000402|ref|ZP_08121514.1| hypothetical protein PseP1_16622 [Pseudonocardia sp. P1]
Length = 201
Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G ++ S + + LVD + ++ G G + +GY + + F + +
Sbjct: 127 GSLSLCRSLLRAGLVDRFRVVMFPVITGATGEER-IYDGYPDLALTMIEHRTFDGGIQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYAPR 190
>gi|260466857|ref|ZP_05813041.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
gi|259029359|gb|EEW30651.1| bifunctional deaminase-reductase domain protein [Mesorhizobium
opportunistum WSM2075]
Length = 215
Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-KLLTILVGR 285
+ ++ P + + + + L
Sbjct: 85 RGEWPDETWKGWWGDNPPYHVPVFVLTHFKRAPITMEGGTTFHFVTDGIHSALEQARSAA 144
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + V GG + ++ +L+D++ L S +++G G
Sbjct: 145 GGKDVRVGGGVSTIRQYLQEKLIDTMHLAISPVLLGTG 182
>gi|302559794|ref|ZP_07312136.1| cytidine and deoxycytidylate deaminase [Streptomyces griseoflavus
Tu4000]
gi|302477412|gb|EFL40505.1| cytidine and deoxycytidylate deaminase [Streptomyces griseoflavus
Tu4000]
Length = 107
Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 50 GGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
HAEV AL A G T VTLEPC+
Sbjct: 8 DPTAHAEVLALRRAAAELGEWRLAGCTLVVTLEPCTMC 45
>gi|218658747|ref|ZP_03514677.1| probable riboflavin biosynthesis protein [Rhizobium etli IE4771]
Length = 221
Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
LL +G + + + + L+D + L +++G G G
Sbjct: 126 DLLTQGSSGLLQTLLAHDLIDELRLLTFPLILGPGKRLFGTGATPAALKLTASSVSTTG 184
>gi|37524190|ref|NP_927534.1| hypothetical protein plu0168 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783613|emb|CAE12463.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 399
Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA 48
+FD M A S L+ V ++ KD +I G
Sbjct: 220 TFDEYAMFMAFSASLRSADLSR---QVGAVLTKDKNIISTGAND 260
>gi|86160328|ref|YP_467113.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776839|gb|ABC83676.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 215
Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + + LVD L+ +++G G G V
Sbjct: 143 GSTELLQTLLEHDLVDEYRLFVFPVLLGSG--KRLFAGGTAPAALRRVES 190
>gi|224824663|ref|ZP_03697770.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
gi|224603156|gb|EEG09332.1| bifunctional deaminase-reductase domain protein [Lutiella
nitroferrum 2002]
Length = 208
Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 10/183 (5%)
Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224
G +++++L+G T + R P +
Sbjct: 25 HPHSGWVRDFMGPEQLRYKLDEVLEAESLLIGRITYESFTAAWPQRSQPGHGADPDLERV 84
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
A+ V+ T D + N ++ +
Sbjct: 85 AEQRSEMQQFADKMNAMPKHVVSTTLRDP---------QWNNAHVIGGDVAGEIARLQQQ 135
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
G +LV G + H+ + LVD + +++G G P R
Sbjct: 136 EG-GPMLVIGSRMLVHTLMAHDLVDEYRIMIFPVLLGSGRRLFPDSPDKTVLRLTDSRVF 194
Query: 345 YFG 347
G
Sbjct: 195 PSG 197
>gi|257067545|ref|YP_003153800.1| tRNA-adenosine deaminase [Brachybacterium faecium DSM 4810]
gi|256558363|gb|ACU84210.1| tRNA-adenosine deaminase [Brachybacterium faecium DSM 4810]
Length = 162
Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 30 SVACLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79
+ ++V DG V+ HAE+ AL A G T VTLEPC
Sbjct: 35 PIGAVVVAPDGAVLATAGNRREADEDPTAHAEILALRRAAAATGRWNLTGCTLVVTLEPC 94
Query: 80 SHY 82
+
Sbjct: 95 TMC 97
>gi|256377992|ref|YP_003101652.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
gi|255922295|gb|ACU37806.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
Length = 206
Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 35/132 (26%), Gaps = 2/132 (1%)
Query: 228 FKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286
K D+ P V A R+ + + L G
Sbjct: 75 GKRMFDAGEHAWPDDPPFHTPVFVVTHERRAPWERRGGTTFHFVNDGVESALAQAREAAG 134
Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
+ V GG +N+ LVD L S ++ G GI VR +
Sbjct: 135 DRDVRVSGGGETILRHLNAGLVDEFTLALSPVLFGA-GIRLFEGVDASRVALDQVRAEPG 193
Query: 347 GSDVCLEYIGKN 358
L Y +
Sbjct: 194 EGVTHLTYAVRR 205
>gi|323135792|ref|ZP_08070875.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
gi|322398883|gb|EFY01402.1| CMP/dCMP deaminase, zinc-binding [Methylocystis sp. ATCC 49242]
Length = 148
Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 48 AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ + +A E YVTLEPC+
Sbjct: 46 DRDPTAHAEMLVIRQAAAAIGSERLVDCDLYVTLEPCAMC 85
>gi|307544750|ref|YP_003897229.1| bifunctional deaminase-reductase domain protein [Halomonas elongata
DSM 2581]
gi|307216774|emb|CBV42044.1| bifunctional deaminase-reductase domain protein [Halomonas elongata
DSM 2581]
Length = 291
Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L+ +G + + + S LVD I ++ +V+G G ++G F +
Sbjct: 197 LVTQGSTDLIRTLLASDLVDEIRMFIFPVVLGGG--KKLFDDGARAAAFKLASHRVSPNG 254
Query: 350 VCL-EYIGK 357
+ + +Y+
Sbjct: 255 IVMAQYVRD 263
>gi|284034235|ref|YP_003384166.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283813528|gb|ADB35367.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 174
Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
L+ L RG + +GG V +F+ + L++ + + +++G GIP
Sbjct: 96 LVETLNDRGAQRVYADGG-RVVQTFLRAGLLNELTITTVPVLLGA-GIPLF 144
>gi|115378242|ref|ZP_01465412.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|310819676|ref|YP_003952034.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1]
gi|115364749|gb|EAU63814.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Stigmatella aurantiaca DW4/3-1]
gi|309392748|gb|ADO70207.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 184
Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LV G +A + L+D + I+ G G P+ ++ + F
Sbjct: 115 RGVLV-GAPKLAAALEEWGLIDEYRIVVHPIISGRG--PTLFHGLSSARHLELLLTQRFK 171
Query: 348 SDVC-LEYIGK 357
S V L + K
Sbjct: 172 SGVQALHFRRK 182
>gi|157412461|ref|YP_001483327.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9215]
gi|157387036|gb|ABV49741.1| RibD/ribG C-terminal domain [Prochlorococcus marinus str. MIT 9215]
Length = 216
Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 49/162 (30%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
IT+ +A S D I G + + + + DA + G+GT+ A +
Sbjct: 1 MSIPRITIVVASSLDGRIAFPQGGESHLGSEEDRKMLDQNLSMVDATIFGLGTLKAHEST 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
+ + + + S K I
Sbjct: 61 YLIKNHNRNNEAKISKSQPISIVASNSKKFNSNWKYFTQPIRRWLISSSKVDNLSNNEFE 120
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
KK L L RG+ L + GGA + +SFI L+
Sbjct: 121 KQLFFEDSWKKTLISLKKRGINDLALLGGAQLINSFIKEDLI 162
>gi|94969508|ref|YP_591556.1| bifunctional deaminase-reductase-like [Candidatus Koribacter
versatilis Ellin345]
gi|94551558|gb|ABF41482.1| bifunctional deaminase-reductase-like protein [Candidatus
Koribacter versatilis Ellin345]
Length = 175
Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ +L+ L V + ++GG + F+ LVD + + R ++IG GIP
Sbjct: 88 QQMSGEPAHILSKLKALRVKHVYLDGGITI-QRFLAVGLVDRMTVTRVPVLIG-EGIPLF 145
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLE 353
+ V+ F S +
Sbjct: 146 -GPVPGDIKLRHVKTKTFKSGLVTT 169
>gi|188592129|ref|YP_001796727.1| hypothetical protein RALTA_B0292 [Cupriavidus taiwanensis LMG
19424]
gi|170938503|emb|CAP63490.1| Conserved hypothetical protein; Bifunctional deaminase-reductase
C-terminal domain [Cupriavidus taiwanensis LMG 19424]
Length = 178
Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ L GV + V+GG V SF+ L+ +++ ++IG G P +
Sbjct: 99 DAMAQLEAEGVRRVYVDGG-QVVQSFLRDGLIADMVVTTVPVLIG-TGRPLF-GALPGDV 155
Query: 337 NFMCVRRDYF 346
+ +F
Sbjct: 156 SLKLESSHHF 165
>gi|146283237|ref|YP_001173390.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
stutzeri A1501]
gi|145571442|gb|ABP80548.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
stutzeri A1501]
gi|327481632|gb|AEA84942.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
stutzeri DSM 4166]
Length = 156
Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI---GRGV---TAYGGCP 53
MP+ D + + +R + T+P ++V DG V+ G G
Sbjct: 1 MPL--DDLALLRKSFDVARRAL-ENGTHP-FGAILVGPDGEVLLEQGNAYMPDHDMTG-- 54
Query: 54 HAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE + A T Y + EPC+
Sbjct: 55 HAERVLMTRASTRYTPEFLSRCTMYTSAEPCAMC 88
>gi|116326433|ref|YP_803153.1| dCMP deaminase [Enterobacteria phage RB32]
gi|228861145|ref|YP_002854168.1| dCMP deaminase [Enterobacteria phage RB51]
gi|228861526|ref|YP_002854547.1| dCMP deaminase [Enterobacteria phage RB14]
gi|115344026|gb|ABI95035.1| dCMP deaminase [Enterobacteria phage RB32]
gi|227438542|gb|ACP30855.1| dCMP deaminase [Enterobacteria phage RB14]
gi|227438819|gb|ACP31131.1| dCMP deaminase [Enterobacteria phage RB51]
gi|291290435|dbj|BAI83230.1| dCMP deaminase [Enterobacteria phage AR1]
Length = 193
Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 48/206 (23%), Gaps = 75/206 (36%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC------- 52
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCDYA 53
Query: 53 ---------------------------------------PH----------AEVQALEEA 63
H AE+ A+ A
Sbjct: 54 AEQGWLLNKPKHTIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFA 113
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT YVTL PC ++ + + + L
Sbjct: 114 ARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNKPGWDDILR 165
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV 146
GI V + + +
Sbjct: 166 NAGIEVFNVPKKNLNKLNWENINEFC 191
>gi|114778358|ref|ZP_01453205.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Mariprofundus
ferrooxydans PV-1]
gi|114551321|gb|EAU53878.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Mariprofundus
ferrooxydans PV-1]
Length = 283
Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 23/58 (39%)
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L +L+ G S + G V + +++ ++D + L ++G + +
Sbjct: 187 LKQLLIEHGYRSAYMIAGPEVHGALLSAGVLDELFLTTHLSLLGGDRFYTIAGRELKK 244
>gi|294630465|ref|ZP_06709025.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
gi|292833798|gb|EFF92147.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. e14]
Length = 201
Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G AA+ S ++ L+D L +++G G + + + +
Sbjct: 133 IIVHGSAALTRSLADAGLIDRYHLLVFPLLLGA-GKRLFSTTDKPAQKLKLTEHETYANG 191
Query: 350 V 350
+
Sbjct: 192 I 192
>gi|325963130|ref|YP_004241036.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469217|gb|ADX72902.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
Length = 211
Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
+ G L G ++ S + + LVD L ++ G G + +GY +
Sbjct: 123 KEMKRSGGQPLSTLGSLSLCRSLLTAGLVDRFRLVVFPVITGRTGRER-IWDGYPDVALE 181
Query: 340 CVRRDYFGSDV-CLEYIG 356
V F + LEYI
Sbjct: 182 MVESRTFDGRLQLLEYIP 199
>gi|311896167|dbj|BAJ28575.1| putative deaminase [Kitasatospora setae KM-6054]
Length = 146
Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
++ D + A+ + V + P L+ DG V+ H E+
Sbjct: 2 ITPADEALLRRAVELAARAV-ESGDAPY-GSLLAGADGAVLAEAHNTVRRERDITAHPEL 59
Query: 58 QALEEAGEEARGA-----TAYVTLEPCSHY 82
+ A E A T Y + +PC
Sbjct: 60 KLARWAARELEPAEAARTTLYTSCQPCGMC 89
>gi|268611450|ref|ZP_06145177.1| putative Cytidine/deoxycytidylate deaminase, zinc-binding region
(CMP/dCMP deaminase, zinc-binding) protein [Ruminococcus
flavefaciens FD-1]
Length = 211
Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 20/124 (16%)
Query: 15 LRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG-------GCPHAEVQALEEA--- 63
L + TS + V + KDG ++ + HAE+ ++
Sbjct: 13 LEEAWTA--FTSGSIPVGAAVFSKDGELLVKDHNRRNEPGTLNPRTAHAELNVIQHIDCR 70
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G R Y ++EPC P C I+ I+ + D +
Sbjct: 71 YGLNIRETELYTSMEPC------PMCMGAIVMSNIKHLHCGSHDRWCGALHLLDTDPYMR 124
Query: 123 GIIV 126
+
Sbjct: 125 SQHI 128
>gi|42522875|ref|NP_968255.1| hypothetical protein Bd1356 [Bdellovibrio bacteriovorus HD100]
gi|39574071|emb|CAE79248.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 193
Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 4/115 (3%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
K ++ V L + G + V
Sbjct: 71 YKWMQQHAEEWPYKVPCFVFTHQNLKPFPGADIRFVQGDVASHHKEMQKLANGKN-IWVV 129
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
GG +A F + L++ + + + + EG L + + F G
Sbjct: 130 GGGDLAGQFYDQGLLNEMHIQTVAVFLNEGKK---LFARHTDTAFKIKNIRQHGD 181
>gi|321254949|ref|XP_003193256.1| hypothetical protein CGB_D0460W [Cryptococcus gattii WM276]
gi|317459726|gb|ADV21469.1| Hypothetical Protein CGB_D0460W [Cryptococcus gattii WM276]
Length = 224
Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 25/99 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY----GGCPHAEVQ 58
D +M ++ + N +IV + ++ G + H E+
Sbjct: 35 EVDLHWMRKSIEV----MPPCHFNAY-GSVIVNASNNELLCSGYNSQLEIGDPTEHGEIN 89
Query: 59 ALEEAGEEARG--------------ATAYVTLEPCSHYG 83
A+ ++ + Y T EPC G
Sbjct: 90 AIRNCVKKYTELGWTPAQITEIWPQSWIYTTAEPCPMCG 128
>gi|296141542|ref|YP_003648785.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296029676|gb|ADG80446.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 180
Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ + G + + + L+DS+ L+ +V+G G ++ L + +
Sbjct: 114 DIYISGSGRLVRALLREGLLDSLHLFVYPVVLGTGERLFADDQLTLA----LQESQAYDN 169
Query: 349 DVC 351
V
Sbjct: 170 GVL 172
>gi|156396554|ref|XP_001637458.1| predicted protein [Nematostella vectensis]
gi|156224570|gb|EDO45395.1| predicted protein [Nematostella vectensis]
Length = 432
Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 34/154 (22%), Gaps = 38/154 (24%)
Query: 5 SFDARFMSAALRFSRWHVGLTS----TNPSVACLIVKDGIVIGRGV-TAYGGC------- 52
+ F L SR L+ + + C+I KD ++G G G
Sbjct: 272 ADHEEF----LHLSRVAQLLSYASDDPHVGIGCVITKDRELVGFGWNHFLNGGYGTFPQA 327
Query: 53 -------------------PHAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQ 90
HAE A+ G T + T PC
Sbjct: 328 SDSPDFSHVSKDQLKYPFVVHAEQNAIISRNTRDISGPGTTMFATRSPCDECMPLLLGVG 387
Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
++ + G
Sbjct: 388 VKRFVLPPATPFRNTQSARVLAEDVFSEKCKAGE 421
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 10 FMSAAL--RFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
FM AL R S W G P+ + V +G ++ T H VQAL + ++
Sbjct: 47 FMVLALFMRESPWADGE----PTTGAVYVQDNGRLLSVDCTRL--GIHGGVQALIKYPDK 100
Query: 67 ARGATAYVTLEPCSHY 82
+G T Y++ PC+
Sbjct: 101 IKGCTVYLSSFPCASC 116
>gi|255532520|ref|YP_003092892.1| bifunctional deaminase-reductase domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255345504|gb|ACU04830.1| bifunctional deaminase-reductase domain protein [Pedobacter
heparinus DSM 2366]
Length = 194
Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 7/154 (4%)
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
G + + P +L + S A P + +
Sbjct: 27 YTYGAWTTPYRSPEGATMLFEAYGPNFDLLLGRHTYDIFSGFWPNAGDFP--MANAINAA 84
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT---SLLVEGGAAVAHSFINSRLVDSI 311
+A + +L + + +T L+V G + + ++ L D +
Sbjct: 85 TKYIATHRPESLQWGPVQDLDGELSSAIRDLKLTEGPDLIVIGSSTLTAVLLDKGLADEV 144
Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
IL +++G G L + + V
Sbjct: 145 ILITYPVLLGRG--KRLLSDSIDARELTFVDSKT 176
>gi|118588673|ref|ZP_01546081.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
12614]
gi|118438659|gb|EAV45292.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
12614]
Length = 167
Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
G + ++GG + SF+ + L+ +++ +++GEG + +
Sbjct: 96 EGHRKVYIDGGL-LIQSFLRAGLIADMVITSVPVLLGEGRRLFGSVAADISLRLEQTKSF 154
Query: 345 YFG 347
G
Sbjct: 155 PSG 157
>gi|9632715|ref|NP_049828.1| Cd dCMP deaminase [Enterobacteria phage T4]
gi|118398|sp|P16006|DCTD_BPT4 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP
deaminase; Short=dCD
gi|5354339|gb|AAD42546.1|AF158101_133 Cd dCMP deaminase [Enterobacteria phage T4]
gi|215838|gb|AAA32489.1| deoxycytidylate deaminase (EC 3.5.4.12) [Enterobacteria phage T4]
gi|299780576|gb|ADJ39938.1| deoxycytidylate deaminase [Enterobacteria phage T4T]
Length = 193
Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 48/206 (23%), Gaps = 75/206 (36%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC------- 52
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCDYA 53
Query: 53 ---------------------------------------PH----------AEVQALEEA 63
H AE+ A+ A
Sbjct: 54 AEQGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFA 113
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT YVTL PC ++ + + + L
Sbjct: 114 ARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNKPGWDDILR 165
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV 146
GI V + + +
Sbjct: 166 NAGIEVFNVPKKNLNKLNWENINEFC 191
>gi|264678223|ref|YP_003278130.1| hypothetical protein CtCNB1_2088 [Comamonas testosteroni CNB-2]
gi|262208736|gb|ACY32834.1| hypothetical protein CtCNB1_2088 [Comamonas testosteroni CNB-2]
Length = 154
Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 29/120 (24%)
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
E + G K + +
Sbjct: 1 MAERSFENIGAWILGRNMFGPIRGPWPDESWKGWWGDEPPYHVPAFVLTHHARPSLRMQG 60
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + L G + + GG A F+ +RLVD I L +++G G
Sbjct: 61 GTDFHFVTDGIASALAQAKAAAGDRDIRIGGGVATVRQFLQARLVDEIHLAVRPLLMGSG 120
>gi|313606255|gb|EFR83242.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL
F2-208]
Length = 116
Score = 39.5 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 47 TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYG 83
T+ HAE+ A+++A + GA YVTLEPC
Sbjct: 5 TSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCS 46
>gi|302509148|ref|XP_003016534.1| DRAP deaminase, putative [Arthroderma benhamiae CBS 112371]
gi|291180104|gb|EFE35889.1| DRAP deaminase, putative [Arthroderma benhamiae CBS 112371]
Length = 233
Score = 39.5 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 34/108 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVT-AYGGC 52
S ++S L + TN V +++ ++ G T G
Sbjct: 10 STHLHYLSQCLELASQSPPK-PTNFRVGAILLLRIYPSSDTAELKETILSTGYTLELRGN 68
Query: 53 PHAEVQALEEA----------------GEEARGAT-----AYVTLEPC 79
HAE + + RG + YVT+EPC
Sbjct: 69 THAEQCCFAKLASHYGVAEEDLGEILEKKRGRGDSEAQIELYVTMEPC 116
>gi|56416962|ref|YP_154036.1| cytosine deaminase [Anaplasma marginale str. St. Maries]
gi|56388194|gb|AAV86781.1| cytosine deaminase [Anaplasma marginale str. St. Maries]
Length = 154
Score = 39.5 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEAG 64
+M A++ + V ++V + V+ HAE+ A+ EA
Sbjct: 9 YMRLAMQEAVSSPAEV----PVGAVVVDERGVVVSSRHNLTLRNSDPTAHAEMLAIREAC 64
Query: 65 -----EEARGATAYVTLEPCSHYGR 84
YVTLEPC+
Sbjct: 65 LHLSTHVLDNCDMYVTLEPCAMCAY 89
>gi|313898703|ref|ZP_07832238.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
gi|312956587|gb|EFR38220.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Clostridium sp. HGF2]
Length = 165
Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 37/160 (23%), Gaps = 41/160 (25%)
Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53
M D ++ A ++ +IV+ ++ G G P
Sbjct: 1 MKQERVDKINYYLDIAGTVAQRSTCRRRIY---GAVIVQHDEIVSTGY---VGAPRGRTN 54
Query: 54 --------------------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSP 86
HAE A+ A GA ++ G
Sbjct: 55 CLDLEYCIREKLRVPRGERYELCRSVHAEANAIISAQRSEMLGADMFLVGYEAVS-GELI 113
Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
+ C + + +R + + + V
Sbjct: 114 QSSNSCSMCKRMIINAGISKVYIRDTPSQYRMIDVYNDWV 153
>gi|302555177|ref|ZP_07307519.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces viridochromogenes DSM 40736]
gi|302472795|gb|EFL35888.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces viridochromogenes DSM 40736]
Length = 201
Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G ++ S + + LVD + ++ G G + +GY + + F + +
Sbjct: 127 GSLSLCRSLLRAGLVDRFRVVMFPVITGATGQER-IYDGYPDVALEMIEHRTFDGRIQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYKPR 190
>gi|123967659|ref|YP_001008517.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
AS9601]
gi|123197769|gb|ABM69410.1| RibD/ribG C-terminal domain-containing protein [Prochlorococcus
marinus str. AS9601]
Length = 216
Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 4/164 (2%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + IA S D I G + K ++ ++ DA + G+GT++A
Sbjct: 1 MSIPRVIIVIASSLDGRIAFPRGGESHLGSEEDKKMLNQHLSKVDATIFGLGTLIAHQST 60
Query: 207 L--TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
+ + H R + S + P+ + V +
Sbjct: 61 YLIKNLNDNDEVHISKRQPISIVASNSKNFNSNWIYFRQPIRRWLISSSKVDNSSNNDFE 120
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+ + D + G+ +L + GGA + +SFI L+
Sbjct: 121 KQLFFKDSWGKTLISLK--KLGINNLALLGGAKLINSFIKEDLI 162
>gi|239982691|ref|ZP_04705215.1| hypothetical protein SalbJ_24894 [Streptomyces albus J1074]
gi|291454540|ref|ZP_06593930.1| DNA-binding protein [Streptomyces albus J1074]
gi|291357489|gb|EFE84391.1| DNA-binding protein [Streptomyces albus J1074]
Length = 205
Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
GGAA S + LVD + L+ + +V+G G +PL G + +
Sbjct: 144 GGAATIRSAFEAGLVDVLSLHLAPVVLGAG---TPLFTGAAPRTLVQRSVTP 192
>gi|118589011|ref|ZP_01546418.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
12614]
gi|118438340|gb|EAV44974.1| bifunctional deaminase-reductase, C-terminal [Stappia aggregata IAM
12614]
Length = 178
Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
++ + +L G + ++GG + SF+ + L+ +++ +++GEG
Sbjct: 94 NFSPEEAMRMLQSEGHRKVYIDGGL-LIQSFLKAGLIADMVITSVPVLLGEGRRLFGSIP 152
Query: 332 GYLEKNFMCVRRDYFG 347
+ + G
Sbjct: 153 ADISLRHEQTKSFPSG 168
>gi|99081691|ref|YP_613845.1| bifunctional deaminase-reductase-like [Ruegeria sp. TM1040]
gi|99037971|gb|ABF64583.1| bifunctional deaminase-reductase-like protein [Ruegeria sp. TM1040]
Length = 176
Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331
+ + GG A A + +L+D +IL R+ V+G G+P +
Sbjct: 110 VYLCGGGAFAGWMLKHQLIDRLILKRAPCVLG-QGVPLFGAD 150
>gi|330858731|ref|YP_004415106.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
gi|327397665|gb|AEA73167.1| putative deoxycytidylate deaminase [Shigella phage Shfl2]
Length = 193
Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 48/206 (23%), Gaps = 75/206 (36%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC------- 52
M S+ + A S+ + V +I K+G +I G + G
Sbjct: 1 MKASTV----LQIAYLVSQESKCCSWK---VGAVIEKNGRIISTGYNGSPAGGVNCCDYA 53
Query: 53 ---------------------------------------PH----------AEVQALEEA 63
H AE+ A+ A
Sbjct: 54 AEQGWLLNKPKHTIIQGHKPECVSFGSTDRFVLAKEHRNAHSEWSSKNEIHAELNAILFA 113
Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
G GAT YVTL PC ++ + + + L
Sbjct: 114 ARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC--------ETYDKNKPGWDDILR 165
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQV 146
GI V + + +
Sbjct: 166 NAGIEVFNVPKKNLNKLNWENINEFC 191
>gi|156186022|gb|ABU55329.1| cytidine and deoxycytidylate deaminase family protein
[Callosobruchus chinensis]
Length = 71
Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 41 VIGRGVT-AYGGCPHAEVQALEEAGEEARGATA-----YVTLEPCSHY 82
V+ + HAE+ A+++ E +T YVTLEPC
Sbjct: 5 VVSSAHNISNDPTAHAEMLAIKQECELLSTSTLYDSDIYVTLEPCPMC 52
>gi|312115805|ref|YP_004013401.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311220934|gb|ADP72302.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 212
Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG 45
++ D M + SR + LI DG ++
Sbjct: 5 NAADEAMMLRCIELSREA--TREGDYPFGALIALDGEIVAEA 44
>gi|297199345|ref|ZP_06916742.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197715322|gb|EDY59356.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 98
Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VC 351
+ + L+D I L+ +++G GI G + G D V
Sbjct: 29 PTIGRQLLERGLIDEIDLHIVPVLLG-DGIRLFENPGGAPVRLARLD----GGDRGAAVN 83
Query: 352 LEYIG 356
+ Y
Sbjct: 84 VRYRP 88
>gi|156186020|gb|ABU55328.1| cytidine and deoxycytidylate deaminase family protein
[Callosobruchus chinensis]
Length = 71
Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 41 VIGRGVT-AYGGCPHAEVQALEEAGEEARGATA-----YVTLEPCSHY 82
V+ + HAE+ A+++ E +T YVTLEPC
Sbjct: 5 VVSSAHNISNDPTAHAEMLAIKQECELLSTSTLYDSDIYVTLEPCPMC 52
>gi|326469680|gb|EGD93689.1| DRAP deaminase [Trichophyton tonsurans CBS 112818]
gi|326478790|gb|EGE02800.1| DRAP deaminase [Trichophyton equinum CBS 127.97]
Length = 233
Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 34/108 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVT-AYGGC 52
S ++S L + TN V +++ ++ G T G
Sbjct: 10 STHLHYLSQCLELASQSPPK-PTNFRVGAILLLRFYPTSDTAELKETILSTGYTLELRGN 68
Query: 53 PHAEVQALEEAG--------------EEARGAT-------AYVTLEPC 79
HAE + E+ RG YVT+EPC
Sbjct: 69 THAEQCCFAKLASHHGVAEEDLGEILEKKRGGQDSEVQIELYVTMEPC 116
>gi|308069982|ref|YP_003871587.1| deoxycytidylate deaminase (dCMP deaminase) [Paenibacillus polymyxa
E681]
gi|305859261|gb|ADM71049.1| Deoxycytidylate deaminase (dCMP deaminase) [Paenibacillus polymyxa
E681]
Length = 172
Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 39/117 (33%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCP---------- 53
+D FM A S V ++V+ ++G G P
Sbjct: 8 DWDTYFMDIAYMVSTRSRCARRH---VGAVLVQGKKLLGTAYNGAPSGVPDCSEAGCMIS 64
Query: 54 ------------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRS 85
HAE L + G++ YVT +PC
Sbjct: 65 EEYEVVHRDGREEMVKKQRCIRTIHAEQNLLLFTDRIDREGSSVYVTDQPCWTCANM 121
>gi|225684799|gb|EEH23083.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 278
Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 25/80 (31%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-----------------------VKDGIVIG 43
++ A L S+ TN V ++ ++
Sbjct: 23 HLYYLRACLSLSQQSPPK-PTNFRVGAILLSRMPTTMPTNPPNQPQSHTPPATYTDTILS 81
Query: 44 RGVT-AYGGCPHAEVQALEE 62
G T G HAE AL +
Sbjct: 82 TGYTLELPGNTHAEQCALAK 101
>gi|82701254|ref|YP_410820.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosospira multiformis ATCC 25196]
gi|82409319|gb|ABB73428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region
[Nitrosospira multiformis ATCC 25196]
Length = 489
Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 34 LIVKDGIVIG-RGVT--AYGGCP-HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSP 86
LI + ++ GV + G HAE++A+ A G RG+T Y T PC + +
Sbjct: 314 LIAEGKKILSDTGVLNISEYGRAVHAEMEAIISAARNGISIRGSTLYSTTYPCHNCAKHI 373
Query: 87 PCAQFIIECGI 97
A I
Sbjct: 374 VAAGISKVRYI 384
>gi|183602381|ref|ZP_02963747.1| beta-fructofuranosidase (sucrase/invertase); possible inulinase
[Bifidobacterium animalis subsp. lactis HN019]
gi|219683304|ref|YP_002469687.1| beta-(1-2)-fructofuranosidase [Bifidobacterium animalis subsp.
lactis AD011]
gi|241191265|ref|YP_002968659.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196671|ref|YP_002970226.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|28611017|emb|CAD26970.1| beta-fructosidase [Bifidobacterium animalis]
gi|46277678|gb|AAS87041.1| beta-(1-2)-fructofuranosidase [Bifidobacterium animalis subsp.
lactis]
gi|183218300|gb|EDT88945.1| beta-fructofuranosidase (sucrase/invertase); possible inulinase
[Bifidobacterium animalis subsp. lactis HN019]
gi|219620954|gb|ACL29111.1| beta-(1-2)-fructofuranosidase [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249657|gb|ACS46597.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251225|gb|ACS48164.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289177380|gb|ADC84626.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295794258|gb|ADG33793.1| Sucrose-6-phosphate hydrolase [Bifidobacterium animalis subsp.
lactis V9]
Length = 532
Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 45/336 (13%), Positives = 81/336 (24%), Gaps = 44/336 (13%)
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
HAE +L EAG A T P H + +I + ++
Sbjct: 30 HAEQLSLAEAGVSALETTRNDRWYPKFHIASNG---GWINDPNGLCRYNGRWHVFYQLHP 86
Query: 114 RGLQW-LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172
G QW G + M + + + + E+ + + D + G
Sbjct: 87 HGTQWGPMHWGHVSSDNMVDWHREPIAFAPSLEQERHGVFSGSAVIGDDGKPWIFYTGHR 146
Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232
G + ++ + + T + + C + + H + +
Sbjct: 147 WANGKDNTGGDWQVQMLAKPNDDELKTFTKEGMIIDCPTDEVDHHFRDPKVWKTGDTWYM 206
Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ + + T +D + + I RG V
Sbjct: 207 TFGVSSKEHRGQMWLYTSSDMVHWSFDRVLFEHPDPNVFMLECPDFFPIRDARG-NEKWV 265
Query: 293 EG----GAAVAHSFINS-----------------------RLVDSIILYRSQIVIGEGG- 324
G GA + RL D + + G
Sbjct: 266 IGFSAMGAKPNGFMNRNVNNAGYMVGTWKPGESFKPETEFRLWDEGHNFYAPQSFNTEGR 325
Query: 325 -----------IPSPLEEGYLEKNFMCVRRDYFGSD 349
P P+EE N R G D
Sbjct: 326 QIMYGWMSPFVAPIPMEEDGWCGNLTLPREITLGDD 361
>gi|331694222|ref|YP_004330461.1| CMP/dCMP deaminase zinc-binding protein [Pseudonocardia
dioxanivorans CB1190]
gi|326948911|gb|AEA22608.1| CMP/dCMP deaminase zinc-binding protein [Pseudonocardia
dioxanivorans CB1190]
Length = 153
Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 28/100 (28%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY----GGCPH- 54
M D R + A+ +R +G T P + ++V G + A H
Sbjct: 1 MIPGPDDERLVRRAIDVARGALG-TGDVP-IGAVVVDASGAEVATACNAREALGDPTAHA 58
Query: 55 ------------AEVQALEEAGEEARGATAYVTLEPCSHY 82
E G T VTLEPC+
Sbjct: 59 EILALRAAAAVLGE--------WRLTGCTLVVTLEPCTMC 90
>gi|239624449|ref|ZP_04667480.1| cytidine/deoxycytidylate deaminase family protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520835|gb|EEQ60701.1| cytidine/deoxycytidylate deaminase family protein [Clostridiales
bacterium 1_7_47FAA]
Length = 165
Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQA 59
S D R + SR N L+ K+G ++ +T HAE Q
Sbjct: 8 SIDIRNLKRCAEISRESR--AGGNTPFGALLADKEGNILLEQPNVEITENKCTGHAETQV 65
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
E+A E + T Y T EPC+
Sbjct: 66 AEKASQQYSKEFLKDCTLYTTAEPCAMC 93
>gi|83309331|ref|YP_419595.1| dihydrofolate reductase [Magnetospirillum magneticum AMB-1]
gi|82944172|dbj|BAE49036.1| Dihydrofolate reductase [Magnetospirillum magneticum AMB-1]
Length = 173
Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V GGA +F++ + L+ +++G+ G P L ++ + + Y
Sbjct: 106 DIWVAGGAKALRAFLDLGAIGHFDLFIMPVLLGK-GRPLFLPSDRGDRMTLLGAKTYING 164
Query: 349 DVCLEYIG 356
V L Y+
Sbjct: 165 VVRLSYVV 172
>gi|307317155|ref|ZP_07596596.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
gi|306897243|gb|EFN27988.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83]
Length = 150
Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 26/142 (18%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC--------------- 52
+ A ++ T V ++V +G + G
Sbjct: 7 YYFGFAEHAAKKSKDSTQ----VGAVLVGPEGEIRLTGYNGPPRGVNDTKMRRERPTKYL 62
Query: 53 --PHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107
HAE + A G + YVT PC+ I +
Sbjct: 63 FASHAEANLIAFAAREGIRTKLCHVYVTHHPCAAC-ARTLIQAGISCVVVGPASFANGSA 121
Query: 108 DVRVSGRGLQWLSQKGIIVDRM 129
+ ++ G+IV
Sbjct: 122 INAELDAAAEMFAEAGVIVKPW 143
>gi|302556984|ref|ZP_07309326.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptomyces griseoflavus Tu4000]
gi|302474602|gb|EFL37695.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptomyces griseoflavus Tu4000]
Length = 161
Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 11/96 (11%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG---GCPHAE 56
M V + ++ + + + ++V DG V+ H E
Sbjct: 1 MAVKDAELPYLRRCVELAAEALESGDE--PFGSVLVAGDGTVLAEDHNRVASGDRTRHPE 58
Query: 57 VQ-----ALEEAGEEARGATAYVTLEPCSHYGRSPP 87
+ A E AT Y + E C +
Sbjct: 59 FELARWAAARMPPAERAAATVYTSGEHCPMCAAAHA 94
>gi|302536133|ref|ZP_07288475.1| DNA-binding protein [Streptomyces sp. C]
gi|302445028|gb|EFL16844.1| DNA-binding protein [Streptomyces sp. C]
Length = 218
Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 28/116 (24%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P +F + + D L
Sbjct: 85 PQRGPWQDHEWQGWWGDEPPFHTPVFVMTHHARPSFTLSDTTFHFTDADPAAVLARAKEA 144
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ + GGAA F+++ LVD++ + S + G L F
Sbjct: 145 AQGKDVRLGGGAATIREFLDADLVDTLHVAVSPGIEIGSGSRLWKSPDELLDRFHL 200
>gi|298251026|ref|ZP_06974830.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297549030|gb|EFH82897.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 200
Score = 39.5 bits (90), Expect = 0.80, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 3/116 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + A + + + K+ + + + + G
Sbjct: 63 GRKTFEFFASYWPEHADMWPGINDVTKYVMSNTMDKSDWKNSVFLKSIDDIKKLKNSEG- 121
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + V G + + + LVD + L + +G G EG L F
Sbjct: 122 SDIQVHGSGNLIQTLLKYDLVDELWLKTFPVTLGNG--KRLFSEGTLPAAFTVTDS 175
>gi|256396754|ref|YP_003118318.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256362980|gb|ACU76477.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 187
Score = 39.5 bits (90), Expect = 0.80, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 293 EGGAAVAH-------SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG + + L+D + L+ I +G G+ ++ ++ D
Sbjct: 112 EGGPVAVSGSVSVVRQLLRAGLLDELHLFVHPIAVG-RGMRLWEDDLDEPIKLRLIKCDV 170
Query: 346 FGSDVCLEYIGKN 358
F S G
Sbjct: 171 FKSGTLHVVYGPE 183
>gi|160872356|ref|ZP_02062488.1| cytosine deaminase (Cytosine aminohydrolase) [Rickettsiella
grylli]
gi|159121155|gb|EDP46493.1| cytosine deaminase (Cytosine aminohydrolase) [Rickettsiella
grylli]
Length = 169
Score = 39.5 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQ 58
++ + F+ A + + + + ++V + V +G H E
Sbjct: 4 LNKKEREFLDLAYQEALLGLKEGGI--PIGSILVVENKVRAKGRNKRIQEHSMIKHGETD 61
Query: 59 ALEE-----AGEEARGATAYVTLEPCSHY 82
LE E+ + AT Y TL PCS
Sbjct: 62 CLENTRRKVLPEDLQRATLYTTLSPCSMC 90
>gi|269914588|pdb|3KGY|A Chain A, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
gi|269914589|pdb|3KGY|B Chain B, Crystal Structure Of Putative Dihydrofolate Reductase
(Yp_001636057.1) From Chloroflexus Aurantiacus J-10-Fl
At 1.50 A Resolution
Length = 231
Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
R + + + L G + + GGA V ++N LVD +
Sbjct: 128 HERRNPWVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGGANVIQQYLNLGLVDELE 187
Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+ ++ G G F R + L Y+
Sbjct: 188 IALIPVIFGG-GRRLFENLHEPLPQFRIDRVLASPTATHLRYVR 230
>gi|254472059|ref|ZP_05085460.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Pseudovibrio sp. JE062]
gi|211959261|gb|EEA94460.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Pseudovibrio sp. JE062]
Length = 195
Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G + + L+D L +++G+G E+G + ++ +
Sbjct: 127 LQVHGSWRLIQQLLEHDLIDEFRLLTFPVILGKG--KKLFEDGAQVRALKHIKSGHTAGG 184
Query: 350 VCLEYIGK 357
V +++ +
Sbjct: 185 VKMDFYRR 192
>gi|116253023|ref|YP_768861.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115257671|emb|CAK08768.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 221
Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
LL +G + + + + L+D + L +++G G G
Sbjct: 126 DLLTQGSSGLLQTLLAHDLIDELRLLTFPLILGPGKRLFGKGAKPEALKLTTNSVSTTGV 185
Query: 349 DVCLEYIG 356
+ Y
Sbjct: 186 -IMSVYER 192
>gi|239623597|ref|ZP_04666628.1| deoxycytidylate deaminase [Clostridiales bacterium 1_7_47_FAA]
gi|239521628|gb|EEQ61494.1| deoxycytidylate deaminase [Clostridiales bacterium 1_7_47FAA]
Length = 161
Score = 39.5 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 29/73 (39%)
Query: 32 ACLIVKDGIVIGRGV-----------------------TAYGGCP-----HAEVQALEEA 63
+IVKD +V+ G G HAE AL
Sbjct: 35 GAVIVKDDVVVSTGYNGSPRGYDNCCDIGSCPRIKLGLHQGEGYGMCRAIHAEQNALLNC 94
Query: 64 G-EEARGATAYVT 75
E+ GA Y+
Sbjct: 95 SREQTMGADLYLA 107
>gi|327303596|ref|XP_003236490.1| DRAP deaminase [Trichophyton rubrum CBS 118892]
gi|326461832|gb|EGD87285.1| DRAP deaminase [Trichophyton rubrum CBS 118892]
Length = 233
Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-----------KDGIVIGRGVT-AYGGC 52
S ++S L + TN V +++ ++ G T G
Sbjct: 10 STHLHYLSQCLELASQSPPK-PTNFRVGAILLLRQYPTSDTAELKETILSTGYTLELRGN 68
Query: 53 PHAEVQALEE 62
HAE +
Sbjct: 69 THAEQCCFAK 78
>gi|163840537|ref|YP_001624942.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Renibacterium
salmoninarum ATCC 33209]
gi|162954013|gb|ABY23528.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Renibacterium
salmoninarum ATCC 33209]
Length = 200
Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 26/116 (22%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+ S +
Sbjct: 54 SQHSAYIMGRNMFGPVGDGWDSAPEWHGWWGDEPLYHAPVFVLTHDEREPLEMSGTTFYF 113
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
G S+ + GGAA ++ + L+D + L+ + ++G+G
Sbjct: 114 VTDGLKSAFDQAKEAAGDGSIAIAGGAATIRQYLAAGLIDELRLHLTPAILGQGER 169
>gi|156741045|ref|YP_001431174.1| deaminase-reductase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156232373|gb|ABU57156.1| bifunctional deaminase-reductase domain protein [Roseiflexus
castenholzii DSM 13941]
Length = 175
Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+ + GG + + + VD++ L + +++ +GG P L + + + +
Sbjct: 105 RDIWLFGGGELFRALLELERVDTVELAIAPVLL-DGGAP-FLPSPTVRRRLNLIDQRR 160
>gi|23016527|ref|ZP_00056282.1| COG0262: Dihydrofolate reductase [Magnetospirillum magnetotacticum
MS-1]
Length = 173
Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+ V GGA +F++ +D L+ +++G G + + + Y
Sbjct: 106 DVWVAGGAKALRAFLDLGAIDHFDLFVMPVLLG-RGRKLFEPTDRCGRMTLLGAKTYING 164
Query: 349 DVCLEYIG 356
V L Y+
Sbjct: 165 VVRLSYVV 172
>gi|73668581|ref|YP_304596.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
barkeri str. Fusaro]
gi|72395743|gb|AAZ70016.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methanosarcina
barkeri str. Fusaro]
Length = 223
Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 24/99 (24%)
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
I + L G ++ + G + + LV+
Sbjct: 113 PEAYINYLKERNYDFIRAGADRVNIRQALEIANERYGFELVVSDSGGVLNSILLEQGLVE 172
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
I L + ++G+ G +R +
Sbjct: 173 EISLILTPEIVGKNGTNLFRTLEKSGTRLELLRDEIVEK 211
>gi|66824069|ref|XP_645389.1| hypothetical protein DDB_G0272030 [Dictyostelium discoideum AX4]
gi|60473505|gb|EAL71449.1| hypothetical protein DDB_G0272030 [Dictyostelium discoideum AX4]
Length = 225
Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 13/132 (9%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP-HAEVQALEE 62
++ +++M A+ + + N A IV K+G V GV G H EV+A+
Sbjct: 50 AYHSKYMQIAIDIAIEN------NSKFAAAIVHKNGTVACTGVNVGGSRMYHGEVKAIMN 103
Query: 63 AGEEARGAT-----AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
+ AT Y T EPC + +F V +
Sbjct: 104 CTTMYQQATWEDYSLYTTGEPCPMCSAAIMWTKFQKVIFASYVSNMYCERCFNQLPMDSN 163
Query: 118 WLSQKGIIVDRM 129
+ + G ++
Sbjct: 164 EIFKLGYGINHN 175
>gi|227538659|ref|ZP_03968708.1| possible cytosine deaminase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241578|gb|EEI91593.1| possible cytosine deaminase [Sphingobacterium spiritivorum ATCC
33300]
Length = 94
Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 52 CPHAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+QA A G+ + T YVT+EPC
Sbjct: 2 TAHAEMQAFTAASSYLGGKYLKDCTLYVTVEPCVMC 37
>gi|15891957|ref|NP_359671.1| dihydrofolate reductase [Rickettsia conorii str. Malish 7]
gi|15619069|gb|AAL02572.1| dihydrofolate reductase [Rickettsia conorii str. Malish 7]
Length = 164
Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 30/109 (27%), Gaps = 3/109 (2%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
++ + + + ++ ++ + N
Sbjct: 23 QMPWSYTKEFEYFYQTVKNNIIVMGRKTFDSIPTKILKNCICIVFSRNTPLQSYNNIFFI 82
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
D +++ + + + GG +A F+ L+D +L +
Sbjct: 83 KSLDDFWQVIKPFTDKKIFMV---GGTKIATLFLEQNLIDEFLLTKINK 128
>gi|319787998|ref|YP_004147473.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317466510|gb|ADV28242.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 186
Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQA 59
+ D ++ A+ SR +V S P ++ D VI GV HAE A
Sbjct: 25 ATDEEKVALAIELSRRNVEARSGGP-FGAVVFGPDHRVIATGVNRVVPHTTSLAHAENMA 83
Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
A ++ + L P + S PC Q
Sbjct: 84 YMLAQQKLQTPRLNDVLAPVTLATSSQPCCQC 115
>gi|258565523|ref|XP_002583506.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907207|gb|EEP81608.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 224
Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 19/76 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-----------------VKDGIVIGRGVT 47
S ++S L + TN V ++ D V+ G T
Sbjct: 6 STHLHYLSQCLALAACSPPK-PTNFRVGAILLLRRYPTASDPDPDQQTTLDDRVLSTGYT 64
Query: 48 -AYGGCPHAEVQALEE 62
G HAE L +
Sbjct: 65 LELRGNTHAEQCCLSK 80
>gi|254474243|ref|ZP_05087633.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Pseudovibrio sp. JE062]
gi|211956617|gb|EEA91827.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain
protein [Pseudovibrio sp. JE062]
Length = 171
Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
+ + M A + ++ P L DG ++ + H E+ A+
Sbjct: 9 ATHQKRMQALVEYTATSFETPYPTPFGGALYGSDGTLLAQAYNRMVRECDPSSHGELNAI 68
Query: 61 EEAGEEAR-----GATAYVTLEPCSHY 82
EA ++ + G+ Y T EPC
Sbjct: 69 REACKKYQTRSFPGSILYATSEPCPMC 95
>gi|196230871|ref|ZP_03129732.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
gi|196225212|gb|EDY19721.1| bifunctional deaminase-reductase domain protein [Chthoniobacter
flavus Ellin428]
Length = 195
Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
L+V G + + + LVD ++L +++G G + + F +
Sbjct: 122 DLIVWGSSTLTPVLLEQGLVDEVVLIVYPVLLGRG--KRCFSDNADPREFALLSTK 175
>gi|78184835|ref|YP_377270.1| cytidine/deoxycytidylate deaminase family protein [Synechococcus
sp. CC9902]
gi|78169129|gb|ABB26226.1| tRNA-adenosine deaminase [Synechococcus sp. CC9902]
Length = 147
Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQALEEAG- 64
M L+ ++ + GL+ P VA +++ +G IG G T HAE+ AL++A
Sbjct: 1 MKVLLQRAQVN-GLSGEVP-VAAVVLDANGRAIGHGRNRRETKQDPLGHAELVALQQAAL 58
Query: 65 ----EEARGATAYVTLEPCSHY 82
VTLEPC
Sbjct: 59 VLGDWRFNQCCLIVTLEPCPMC 80
>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
Length = 1449
Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F+S A+ + V ++V +V+ HAE
Sbjct: 59 DRDYKFLSKAVDEAYKGV-TCGDGGPFGAVVVRNNEVVVSCHNMVL---RHT-DPTAHAE 113
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPD 108
V A+ EA ++ + + EPC + + + D
Sbjct: 114 VTAVREACKKLNRLELSDCEIFASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAVGFDDF 173
Query: 109 VRVSGRGLQWLSQKGIIV 126
+ + RG + + + +
Sbjct: 174 IADAIRGTSYYQKANLEI 191
>gi|156402718|ref|XP_001639737.1| predicted protein [Nematostella vectensis]
gi|156226867|gb|EDO47674.1| predicted protein [Nematostella vectensis]
Length = 452
Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 28/101 (27%)
Query: 10 FM-SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------------- 53
M A S+ V C+++ + VI G + +
Sbjct: 289 HMTRLAQMLSQRSD---DPIRGVGCVLMYENEVISIGWSGFPAKATYGEFPRSACKKPYI 345
Query: 54 -HAEVQA--------LEEAGEEARGATAYVTLEPCSHYGRS 85
HA A + +A A Y++ PC
Sbjct: 346 IHAAENAVLTKNQQIIRKADCLTSSAQLYISKIPCRECVHM 386
>gi|270208632|ref|YP_003329403.1| probable dihydrofolate reductase FolA [Sinorhizobium meliloti]
gi|76880906|gb|ABA56076.1| probable dihydrofolate reductase FolA [Sinorhizobium meliloti]
Length = 143
Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + GG + +F+ +D I +Y +IG G SP
Sbjct: 95 DVWMLGGGRLQMAFMERGALDEIEIYLIPEIIGSGQPYSP 134
>gi|15610888|ref|NP_218269.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
H37Rv]
gi|15843372|ref|NP_338409.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium tuberculosis CDC1551]
gi|31794922|ref|NP_857415.1| cytidine/deoxycytidylate deaminase [Mycobacterium bovis
AF2122/97]
gi|121639666|ref|YP_979890.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148663618|ref|YP_001285141.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium tuberculosis H37Ra]
gi|148824957|ref|YP_001289711.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
F11]
gi|167970913|ref|ZP_02553190.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis H37Ra]
gi|215405807|ref|ZP_03417988.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
02_1987]
gi|215413680|ref|ZP_03422348.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
94_M4241A]
gi|215424998|ref|ZP_03422917.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T92]
gi|215448096|ref|ZP_03434848.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T85]
gi|218755535|ref|ZP_03534331.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
1503]
gi|219559836|ref|ZP_03538912.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T17]
gi|224992162|ref|YP_002646851.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253800799|ref|YP_003033800.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 1435]
gi|254366297|ref|ZP_04982341.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis str. Haarlem]
gi|254552866|ref|ZP_05143313.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260184675|ref|ZP_05762149.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
CPHL_A]
gi|260198800|ref|ZP_05766291.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T46]
gi|260202955|ref|ZP_05770446.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
K85]
gi|289441188|ref|ZP_06430932.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T46]
gi|289445351|ref|ZP_06435095.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
CPHL_A]
gi|289556017|ref|ZP_06445227.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 605]
gi|289571998|ref|ZP_06452225.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T17]
gi|289572402|ref|ZP_06452629.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
K85]
gi|289747592|ref|ZP_06506970.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
02_1987]
gi|289748271|ref|ZP_06507649.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T92]
gi|289759914|ref|ZP_06519292.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T85]
gi|289763934|ref|ZP_06523312.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
1503]
gi|294995336|ref|ZP_06801027.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
210]
gi|297636433|ref|ZP_06954213.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 4207]
gi|297733427|ref|ZP_06962545.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN R506]
gi|298527225|ref|ZP_07014634.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis 94_M4241A]
gi|306778112|ref|ZP_07416449.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu001]
gi|306778644|ref|ZP_07416981.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu002]
gi|306786666|ref|ZP_07424988.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu003]
gi|306791033|ref|ZP_07429355.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu004]
gi|306791352|ref|ZP_07429654.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu005]
gi|306795417|ref|ZP_07433719.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu006]
gi|306801392|ref|ZP_07438060.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu008]
gi|306805598|ref|ZP_07442266.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu007]
gi|306969995|ref|ZP_07482656.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu009]
gi|306974229|ref|ZP_07486890.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu010]
gi|307081937|ref|ZP_07491107.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu011]
gi|307086550|ref|ZP_07495663.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu012]
gi|313660758|ref|ZP_07817638.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN V2475]
gi|2960176|emb|CAA18074.1| POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE [Mycobacterium
tuberculosis H37Rv]
gi|13883737|gb|AAK48223.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium tuberculosis CDC1551]
gi|31620520|emb|CAD95964.1| POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE [Mycobacterium bovis
AF2122/97]
gi|121495314|emb|CAL73801.1| Possible cytidine/deoxycytidylate deaminase [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134151809|gb|EBA43854.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis str. Haarlem]
gi|148507770|gb|ABQ75579.1| cytidine and deoxycytidylate deaminase family protein
[Mycobacterium tuberculosis H37Ra]
gi|148723484|gb|ABR08109.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis F11]
gi|224775277|dbj|BAH28083.1| putative cytidine/deoxycytidylate deaminase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253322302|gb|ACT26905.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 1435]
gi|289414107|gb|EFD11347.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T46]
gi|289418309|gb|EFD15510.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
CPHL_A]
gi|289440649|gb|EFD23142.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 605]
gi|289536833|gb|EFD41411.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
K85]
gi|289545752|gb|EFD49400.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T17]
gi|289688120|gb|EFD55608.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
02_1987]
gi|289688858|gb|EFD56287.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T92]
gi|289711440|gb|EFD75456.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis GM
1503]
gi|289715478|gb|EFD79490.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
T85]
gi|298497019|gb|EFI32313.1| hypothetical cytidine/deoxycytidylate deaminase [Mycobacterium
tuberculosis 94_M4241A]
gi|308213634|gb|EFO73033.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu001]
gi|308328367|gb|EFP17218.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu002]
gi|308328772|gb|EFP17623.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu003]
gi|308332614|gb|EFP21465.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu004]
gi|308340105|gb|EFP28956.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu005]
gi|308344093|gb|EFP32944.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu006]
gi|308347895|gb|EFP36746.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu007]
gi|308351763|gb|EFP40614.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu008]
gi|308352546|gb|EFP41397.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu009]
gi|308356497|gb|EFP45348.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu010]
gi|308360445|gb|EFP49296.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu011]
gi|308364027|gb|EFP52878.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
SUMu012]
gi|323717617|gb|EGB26819.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
CDC1551A]
gi|326905590|gb|EGE52523.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
W-148]
gi|328460526|gb|AEB05949.1| cytidine/deoxycytidylate deaminase [Mycobacterium tuberculosis
KZN 4207]
Length = 152
Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 38 DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEPCSHY 82
DG + R V A HAE+ A+ A G G T VT+EPC+
Sbjct: 33 DGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPCTMC 87
>gi|134101530|ref|YP_001107191.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291008189|ref|ZP_06566162.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133914153|emb|CAM04266.1| bifunctional deaminase-reductase-like protein [Saccharopolyspora
erythraea NRRL 2338]
Length = 187
Score = 39.2 bits (89), Expect = 0.92, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
I+ LVD + ++R+ +V+G G L V FGS + Y
Sbjct: 129 IDLGLVDELRMFRNPVVVGGGT--PFLPPVTEHVRLDLVETRTFGS--RVIYER 178
>gi|54026442|ref|YP_120684.1| putative deaminase [Nocardia farcinica IFM 10152]
gi|54017950|dbj|BAD59320.1| putative deaminase [Nocardia farcinica IFM 10152]
Length = 169
Score = 39.2 bits (89), Expect = 0.92, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT---AYGGCPHAEVQ 58
++ D + + +R + ++V G V + H E +
Sbjct: 10 ITEADRAHLRRCVELARAALAEGDE--PFGSVLVDGAGEVRFEARNAIVSGDPTRHPEFE 67
Query: 59 ALEEAGEEARGA-----TAYVTLEPCSHYGRSPP 87
AG A T Y + E C +
Sbjct: 68 IARWAGTHLSSAERAASTVYTSGEHCPMCSAAHA 101
>gi|319441329|ref|ZP_07990485.1| riboflavin biosynthesis protein RibD [Corynebacterium variabile DSM
44702]
Length = 190
Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG +A + +D +IL R+ +V+G GI NF R F
Sbjct: 121 KDIYLCGGGDLAGVLLPE--IDRLILKRNPLVLG-DGIRLFGHTAATTVNFDLERCRSFD 177
Query: 348 SDVCL-EYIGKN 358
S V + EY +
Sbjct: 178 SGVIVEEYRRSD 189
>gi|257056618|ref|YP_003134450.1| dihydrofolate reductase [Saccharomonospora viridis DSM 43017]
gi|256586490|gb|ACU97623.1| dihydrofolate reductase [Saccharomonospora viridis DSM 43017]
Length = 208
Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS---LLVEGGAAVAHSFINSRLV 308
+A L T L VT L V G + + ++LV
Sbjct: 87 HTKPKYVASTTLTDPTWVDTTVLSDDLATTLADLKVTREGELQVHGSGVLVRWLLANQLV 146
Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
D I L +++G+G P + + R G
Sbjct: 147 DEITLLVCPVIVGQGRRLFPDTGPDTALDLVESRTTPKG 185
>gi|85090433|ref|XP_958414.1| cytosine deaminase [Neurospora crassa OR74A]
gi|28919775|gb|EAA29178.1| cytosine deaminase [Neurospora crassa OR74A]
Length = 159
Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 18/138 (13%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61
DA ++ A + ++ P A LI GIV+GRG H E L
Sbjct: 2 DDAAGLAIAFKEAKKS-YEQGGIPIGAALISSTGIVLGRGHNQRVQLDSPIHHGETATLL 60
Query: 62 EAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
AG +T Y TL PC + ++ V + G
Sbjct: 61 NAGRLPASTYANSTMYTTLSPCDMC---------TGAILLYKIRRVVIGENSTFKAAGED 111
Query: 118 WLSQKGIIVDRMMESEGK 135
+L Q+G+ V M + E +
Sbjct: 112 YLRQRGVEVVVMDDQECR 129
>gi|284029082|ref|YP_003379013.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283808375|gb|ADB30214.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 205
Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L + G A + + + + L+D++ L + VIG G G G
Sbjct: 122 RELQIHGSARLGNFLLAAGLLDAVRLVIAPAVIGSGRRLFDHRGGSGGLRLTKHESTPKG 181
Query: 348 SDVCLEY 354
V LEY
Sbjct: 182 L-VLLEY 187
>gi|169772375|ref|XP_001820656.1| cytosine deaminase [Aspergillus oryzae RIB40]
gi|83768517|dbj|BAE58654.1| unnamed protein product [Aspergillus oryzae]
Length = 162
Score = 39.2 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 12/133 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVI----GRGVTAYGGCPHAEV 57
VS D ++ + +R + +P ++V G VI R VT H E
Sbjct: 2 VSESDINYLRRCVDLAREAL-EAGDSP-FGSVLVDAAGKVIYEDRNRTVTEADVTWHPEF 59
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
++ A + AT Y + E C + A V
Sbjct: 60 TIVKWAQKNLTPTERAAATVYTSGEHCPMCAAAHANAGLGRIVYASSTAQFVQWRMEMGI 119
Query: 113 GRGLQWLSQKGII 125
G +
Sbjct: 120 KPGPVAPLSINQV 132
>gi|256394622|ref|YP_003116186.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256360848|gb|ACU74345.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 181
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356
+VA + + VD + L + + G G + + GS + + Y
Sbjct: 120 SVARELLAAGAVDELRLVIAPRIAGG-GRRLLDGLPGIALETLETEVSPTGS-LLVRYRV 177
>gi|150397000|ref|YP_001327467.1| deaminase-reductase domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150028515|gb|ABR60632.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
medicae WSM419]
Length = 219
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
LL +G + + LVD + + IV+G+G +G + V G+
Sbjct: 127 DLLTQGSTDFLQTLFRNDLVDELHISCFPIVLGKG--KRLFGDGAVPMALKLVGSKVSGT 184
Query: 349 DVCL-EYIGK 357
V + +Y+
Sbjct: 185 GVTISKYVRN 194
>gi|302803749|ref|XP_002983627.1| hypothetical protein SELMODRAFT_228959 [Selaginella moellendorffii]
gi|300148464|gb|EFJ15123.1| hypothetical protein SELMODRAFT_228959 [Selaginella moellendorffii]
Length = 216
Score = 39.2 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KDGIVIGRGVTAYGGCPHAE 56
D +F+S A+ + V ++V +V+ HAE
Sbjct: 59 DRDYKFLSKAVDEAYKGV-TCGDGGPFGAVVVRNNEVVVSCHNMVL---RHT-DPTAHAE 113
Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHY 82
V A+ EA ++ + + EPC
Sbjct: 114 VTAVREACKKLNRLELSDCEIFASCEPCPMC 144
>gi|300786562|ref|YP_003766853.1| hypothetical protein AMED_4682 [Amycolatopsis mediterranei U32]
gi|299796076|gb|ADJ46451.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 191
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G + + +N+ LVD++ + ++ G+ G+ + + +G + + + F L
Sbjct: 125 GSLTLNRAVLNAGLVDAVEVTVFPVLSGKTGV-TRIFDGVDDFDLELLEARTFDGHTQVL 183
Query: 353 EYIG 356
Y
Sbjct: 184 TYRP 187
>gi|238761261|ref|ZP_04622238.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
gi|238761514|ref|ZP_04622490.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
gi|238700488|gb|EEP93229.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
gi|238700741|gb|EEP93481.1| RibD C-terminal domain [Yersinia kristensenii ATCC 33638]
Length = 183
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
K L+ L G ++GG V SFI L++ + + + I+IG GIP
Sbjct: 101 PKALMVSLSEAGWKRAYIDGG-QVIQSFIRDGLIEDLAITQVPILIG-QGIPLF-GNLTR 157
Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356
+ + + F S +
Sbjct: 158 DIDMTLISSKAFPSGLVHHRYR 179
>gi|284034012|ref|YP_003383943.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283813305|gb|ADB35144.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 179
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+G L++ G +A + + LVD + + +V G G +P+ +
Sbjct: 107 QGDGDLVIYGFGRLAQTLLEHDLVDELNFWLHPVVAGSG---TPVFRSGISSRLDLAEVS 163
Query: 345 Y 345
+
Sbjct: 164 H 164
>gi|332186847|ref|ZP_08388589.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
gi|332013180|gb|EGI55243.1| ribD C-terminal domain protein [Sphingomonas sp. S17]
Length = 192
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
GG A S I LVD L + + +G G E V F G +
Sbjct: 130 GGVRFARSLIAHGLVDRFALLVAPVALGRG--EPLFSELERPLALELVEAVTFPGGAMAK 187
Query: 353 EYIG 356
Y
Sbjct: 188 IYRP 191
>gi|262200453|ref|YP_003271661.1| bifunctional deaminase-reductase-like protein [Gordonia bronchialis
DSM 43247]
gi|262083800|gb|ACY19768.1| bifunctional deaminase-reductase-like protein [Gordonia bronchialis
DSM 43247]
Length = 214
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%)
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
N E + P L +F +
Sbjct: 66 RDFHHNIGAEIMGANKFSPHRGPWENHDWLGWWGDEPPFHTPVFVMTHHLRPSFTLSDTT 125
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ D L + + GGAA+ SF+++ LVD++ + I +G G
Sbjct: 126 FHFVDDEPAVVLEKAREAADGKDVRLGGGAAIIRSFLDADLVDTLHVAVCDIELGAGSR 184
>gi|323307336|gb|EGA60615.1| Hpf1p [Saccharomyces cerevisiae FostersO]
Length = 659
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 62/283 (21%), Gaps = 19/283 (6%)
Query: 15 LRFSRWHVGLTSTNPSVAC-----LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69
L S S + I+ G V G AE ++
Sbjct: 387 LSESTKGQVTFSPYSNSGAFSFSNAILNGGSV--SGFQRR-----AESGSVNNGEINLEN 439
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129
+ YV +EP S G + + + G ++ +
Sbjct: 440 GSTYVVVEPVSGSGTINIISGNLYLHYPD--TFTGQTVVFKGEGVLAVDPTESNTTPIPV 497
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
+ G+ Y + + + + + LR
Sbjct: 498 VGYTGEKPNRHYSRCNCSFLRQCYWCFNCNTRQLTILLLYWYWIL-----QFWFQRLRRN 552
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
L + + L + ++ HF ++ +
Sbjct: 553 ICWCLCLLSKLRRCCCFQRYTLIHIYHIRGYQLYFRFHFIWCFRNRFNCLHFIRCFRNWF 612
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292
+ ++ + L + I +S L+
Sbjct: 613 NGFHFIRCFRDWFNGFHLDFRLPICLYHNINICNNHKHSSCLL 655
>gi|297623201|ref|YP_003704635.1| bifunctional deaminase-reductase domain-containing protein
[Truepera radiovictrix DSM 17093]
gi|297164381|gb|ADI14092.1| bifunctional deaminase-reductase domain protein [Truepera
radiovictrix DSM 17093]
Length = 185
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
GG S L+D L + + +G G P
Sbjct: 126 GGGTFVSSLTQRGLIDEFHLLVNPVALGSGMAIFP 160
>gi|271962570|ref|YP_003336766.1| bifunctional deaminase-reductase-like protein [Streptosporangium
roseum DSM 43021]
gi|270505745|gb|ACZ84023.1| bifunctional deaminase-reductase-like protein [Streptosporangium
roseum DSM 43021]
Length = 178
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V G + + + + L+D ++ +V G G L FG
Sbjct: 113 DIIVWGCGRLTDALLEAGLMDEYKIWVYPVVRGHGQR---FWREGLSAKLSLTEARAFGQ 169
Query: 349 DVCLEYI 355
V L+Y
Sbjct: 170 VVLLDYR 176
>gi|291297764|ref|YP_003509042.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290566984|gb|ADD39949.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 184
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
L+ GG +A + LVD LY +++G G + P
Sbjct: 120 LLIGGPVLAAHAFAAGLVDVCELYVVPVIVGGGHLGLP 157
>gi|323697968|ref|ZP_08109880.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio sp. ND132]
gi|323457900|gb|EGB13765.1| CMP/dCMP deaminase, zinc-binding [Desulfovibrio desulfuricans
ND132]
Length = 144
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLI-VKDGIVIGRGVTAY----GGCPHAEVQALEEA 63
M A + G V + G ++ HAE+ L EA
Sbjct: 1 MDVAFGEACKAAQAGEA----PVGAALFTPTGTLLASAHNRPIAAHDPTGHAEILCLREA 56
Query: 64 GE-----EARGATAYVTLEPCSHY 82
VTLEPC
Sbjct: 57 ARVLRNYRLPDTILAVTLEPCLMC 80
>gi|295662925|ref|XP_002792016.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Paracoccidioides brasiliensis
Pb01]
gi|226279668|gb|EEH35234.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Paracoccidioides brasiliensis
Pb01]
Length = 276
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 25/80 (31%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-----------------------VKDGIVIG 43
++ A L S+ TN V ++ ++
Sbjct: 23 HLYYLRACLSLSQQSPPK-PTNFRVGAILLSRMPTTIPTNPPNQLQSHTPPTTYTDTILS 81
Query: 44 RGVT-AYGGCPHAEVQALEE 62
G T G HAE AL +
Sbjct: 82 TGYTLELSGNTHAEQCALAK 101
>gi|153003383|ref|YP_001377708.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152026956|gb|ABS24724.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 227
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%)
Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
V V G K + + V
Sbjct: 61 VAREDVDDAFAARGFENVGAWILGRNMFGPVRGPWPDDGWKGWWGSNPPYHVPVFVLTHH 120
Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314
A + + L + + GG A ++ + L+D + L
Sbjct: 121 ARAPIEMEGGTTFHFVTDGIHAALERAREAARGKDVRLGGGVATIRQYLTAGLIDELHLA 180
Query: 315 RSQIVIGEG 323
S +++G G
Sbjct: 181 ISPVLLGRG 189
>gi|21218960|ref|NP_624739.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
gi|6138886|emb|CAB59715.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
Length = 215
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+++ GG A+ S +++ LV+ + L+ + +V+G G +PL G
Sbjct: 150 DVVLMGGGALIGSALDAGLVEVLSLHLAPVVLGSG---TPLFTGGTPHTL 196
>gi|189913159|ref|YP_001965047.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|189913496|ref|YP_001964724.1| Putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167777835|gb|ABZ96134.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167781564|gb|ABZ99860.1| Putative dihydrofolate reductase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 178
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
++ ++ + I R L++L+ L +G ++ V+GG + S + L+D+I + +
Sbjct: 78 KNPNYQIESKHQISIFTRPLRELVPFLETKGYQNVYVDGG-KLIQSILMESLLDTITITQ 136
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
I++G G + E +E + G
Sbjct: 137 IPILLGSGIPLFGVTENEIELKHRKTQSYPNG 168
>gi|188989473|ref|YP_001901483.1| putative deaminase [Xanthomonas campestris pv. campestris str.
B100]
gi|167731233|emb|CAP49407.1| putative deaminase [Xanthomonas campestris pv. campestris]
Length = 253
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GGAA A S I L D +L I++G+ G+P + + V F
Sbjct: 191 GGAAFARSLIAHNLADEYVLGVYPILLGK-GVP-IFNDLPAPRPLTLVSTHTF 241
>gi|284029115|ref|YP_003379046.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283808408|gb|ADB30247.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 199
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G +LV ++ + + LVD + L + G GG +
Sbjct: 128 GTGDILVNSSPSIIKPLLAADLVDRLYLMIFPEITGGGGRLFDDGLPASTWTLTDQQTGK 187
Query: 346 FGS 348
G
Sbjct: 188 LGE 190
>gi|297190195|ref|ZP_06907593.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
gi|197719060|gb|EDY62968.1| riboflavin biosynthesis protein RibD [Streptomyces
pristinaespiralis ATCC 25486]
Length = 201
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G ++ S + + LVD + ++ G G + +GY + + F + +
Sbjct: 127 GSLSLCRSLLRAGLVDRFRVVMFPVITGATGEER-IYDGYPDVALEMIEHRTFDGRIQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYKPR 190
>gi|327194597|gb|EGE61447.1| putative riboflavin biosynthesis protein [Rhizobium etli CNPAF512]
Length = 221
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+LL +G + + + + ++D + L +++G G G
Sbjct: 126 NLLTQGSSGLLQTLLAHDMIDELRLLTFPLILGPGKRLFGAGATPEALRLTVNSVSTTGV 185
Query: 349 DVCLEYIG 356
+ Y
Sbjct: 186 -IMSVYER 192
>gi|238490276|ref|XP_002376375.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
gi|220696788|gb|EED53129.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357]
Length = 162
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 12/133 (9%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVI----GRGVTAYGGCPHAEV 57
VS D ++ + +R + +P ++V G VI R VT H E
Sbjct: 2 VSESDINYLRRCVDLAREAL-EAGDSP-FGSVLVDAAGKVIYEDRNRTVTEADVTWHPEF 59
Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
++ A + AT Y + E C + A V
Sbjct: 60 TIVKWAQKNLTPTERAAATVYTSGEHCPMCAAAHANAGLGRIVYASSTTQYVQWRTEMGI 119
Query: 113 GRGLQWLSQKGII 125
G +
Sbjct: 120 KPGPVAPLSINQV 132
>gi|149392256|gb|ABR25967.1| cytidine/deoxycytidylate deaminase family protein [Oryza sativa
Indica Group]
gi|215713595|dbj|BAG94732.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 116
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 50 GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVV 101
HAEV A+ EA ++ Y + EPC + + +
Sbjct: 7 DPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRLVYGAKAEAAI 66
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIV 126
D + + RG + + + +
Sbjct: 67 AIGFDDFIADALRGTGFYQKANMEI 91
>gi|89897124|ref|YP_520611.1| hypothetical protein DSY4378 [Desulfitobacterium hafniense Y51]
gi|89336572|dbj|BAE86167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 202
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
+ + GG + + LVD+ I++G G P + + VR +
Sbjct: 122 RDIWLYGGGNLFSQLLAWNLVDTFEPAIIPILLGGGVQLLP--PHGIRRRLELVRHRVYP 179
Query: 347 GSDVCLEYIGK 357
+ LEY +
Sbjct: 180 SGMLLLEYEVQ 190
>gi|110638711|ref|YP_678920.1| hypothetical protein CHU_2317 [Cytophaga hutchinsonii ATCC 33406]
gi|110281392|gb|ABG59578.1| conserved hypothetical protein (possible dihydrofolate reductase)
[Cytophaga hutchinsonii ATCC 33406]
Length = 199
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 41/116 (35%), Gaps = 3/116 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + A + + R+K+ + + + T+ G
Sbjct: 62 GRKTFEIWEKYWPQHADSWPGINSGVKYVLSNTREKSDWQHTVFLKHVAAIRTLKNTNGA 121
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ V G + + H +++ LVD + L +++G+G ++G + +
Sbjct: 122 -DIQVWGSSELIHLLLSNDLVDELKLKIHPLLLGKG--KKLFDDGAVPAALTLIDS 174
>gi|281212623|gb|EFA86783.1| hypothetical protein PPL_00588 [Polysphondylium pallidum PN500]
Length = 217
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 7 DARFMSAALRFS--RWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALE 61
++M A + + ++ T +IV +G V G+ H E+ A+
Sbjct: 46 HEKYMQIAYDLAIEKNNLFTT--------VIVAPNGTVACTGLNQNENSAIYHGEMVAIM 97
Query: 62 EAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
G + Y T E C + A F + D +
Sbjct: 98 NCSRIHNKNTWEGYSLYTTGESCVMCHAAAMWAGFSKVIYGTSIQTMYCDKCLGQIP 154
>gi|254233244|ref|ZP_04926570.1| hypothetical protein TBCG_03677 [Mycobacterium tuberculosis C]
gi|124603037|gb|EAY61312.1| hypothetical protein TBCG_03677 [Mycobacterium tuberculosis C]
Length = 152
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 38 DGIVIGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEPCSHY 82
DG + R V A HAE+ A+ A G G T VT+EPC+
Sbjct: 33 DGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVEPCTMC 87
>gi|157827905|ref|YP_001494147.1| dihydrofolate reductase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932594|ref|YP_001649383.1| dihydrofolate reductase [Rickettsia rickettsii str. Iowa]
gi|157800386|gb|ABV75639.1| dihydrofolate reductase [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907681|gb|ABY71977.1| dihydrofolate reductase [Rickettsia rickettsii str. Iowa]
Length = 164
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 29/109 (26%), Gaps = 3/109 (2%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
++ + + + + ++ + N
Sbjct: 23 QMPWSYTKEFEYFYQTVKNNIIVMGRKTFDSRPTKILKNCICIVFSRNTPLQSYNNIFFI 82
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
D +++ + + + GG +A F+ L+D +L +
Sbjct: 83 KSLDDFWQVIKPFTDKKIFMV---GGTEIATLFLEQNLIDEFLLTKINK 128
>gi|34581005|ref|ZP_00142485.1| dihydrofolate reductase [Rickettsia sibirica 246]
gi|229586259|ref|YP_002844760.1| Dihydrofolate reductase [Rickettsia africae ESF-5]
gi|28262390|gb|EAA25894.1| dihydrofolate reductase [Rickettsia sibirica 246]
gi|228021309|gb|ACP53017.1| Dihydrofolate reductase [Rickettsia africae ESF-5]
Length = 164
Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 30/109 (27%), Gaps = 3/109 (2%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
++ + + + ++ ++ + N
Sbjct: 23 QMPWSYTKEFEYFYQTVKNNIIVMGRKTFDSIPTKILKNCICIVFSRNTPLQSYNNIFFI 82
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318
D +++ + + + GG +A F+ L+D +L +
Sbjct: 83 KSLDDFWQVIKPFTDKKIFMV---GGTEIATLFLEQNLIDEFLLTKINK 128
>gi|271966169|ref|YP_003340365.1| hypothetical protein Sros_4799 [Streptosporangium roseum DSM 43021]
gi|270509344|gb|ACZ87622.1| hypothetical protein Sros_4799 [Streptosporangium roseum DSM 43021]
Length = 89
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
+ L+D +L + +++G G P N + F V L
Sbjct: 36 RAGLIDEYVLVTAPVLLGS-GTPFFTALDNW-VNLTLMETRTFPDGVLLT 83
>gi|224043372|ref|XP_002198216.1| PREDICTED: cytidine and dCMP deaminase domain containing 1
[Taeniopygia guttata]
Length = 489
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ +I G+ HA AL + G + Y + +PCS
Sbjct: 61 GLVVVKNMKII--GLHCSSTDLHAGQIALIKHGSRLKNCDLYFSRKPCSTC 109
>gi|310800736|gb|EFQ35629.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 169
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 23/105 (21%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI------------GRGVT 47
MP S D + + + ++ + + + ++V +G +I G G
Sbjct: 1 MP-SDPDPKILRRCIELAKEALD--AGDDPFGSVLVGANGSIIREDRNRVNTGESGDG-- 55
Query: 48 AYGGCPHAEV-QA----LEEAGEEARGATAYVTLEPCSHYGRSPP 87
G H E A L + EE A+ Y + E C +
Sbjct: 56 RRDGTLHPEFTLAHWAQLNLSAEERAKASVYTSGEHCPMCAAAHA 100
>gi|302525655|ref|ZP_07277997.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302434550|gb|EFL06366.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 178
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCL 352
GG + + + L+D ++G G P+ + V R F S V +
Sbjct: 111 GGVQLPLALASMGLIDEYEFVVHPRIVGHG--PTLFAGLPQHLDLKFVDRREFSSGAVAM 168
Query: 353 EYIGKN 358
Y+ K+
Sbjct: 169 RYVPKD 174
>gi|328854283|gb|EGG03416.1| hypothetical protein MELLADRAFT_109238 [Melampsora larici-populina
98AG31]
Length = 159
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 13 AALRFSRWHVGLTSTNP---SVACLIVKD-GIVIGRGVTAY-GGCPHAEVQALEEAG--E 65
AL+ + +P ++ LI+ ++ +G + G HAE AL + E
Sbjct: 17 LALQEATK----CVPSPQAFNIGSLILSSSNQLLSKGHSRELPGNTHAEENALSKLTDLE 72
Query: 66 EARGA-TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
G+ VT+EPCS + + + + R+ L L K
Sbjct: 73 IPDGSLKLVVTMEPCSVRLSGKTSCVD------KILEWNDEHREKRIGEVWLGVLEPKDF 126
Query: 125 IVD 127
+V
Sbjct: 127 VVC 129
>gi|315050754|ref|XP_003174751.1| hypothetical protein MGYG_02281 [Arthroderma gypseum CBS 118893]
gi|311340066|gb|EFQ99268.1| hypothetical protein MGYG_02281 [Arthroderma gypseum CBS 118893]
Length = 232
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI--------VK---DGIVIGRGVT-AYGGC 52
S +++S L + TN V ++ V ++ G T G
Sbjct: 10 STHLQYLSQCLELASQSPPK-PTNFRVGAILLLRLYPTRVNPELKETILSTGYTLELRGN 68
Query: 53 PHAEVQALEE 62
HAE +
Sbjct: 69 THAEQCCFAK 78
>gi|78221462|ref|YP_383209.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
GS-15]
gi|78192717|gb|ABB30484.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter metallireducens
GS-15]
Length = 186
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAY-GGCP---HAEVQALEEAG 64
M+ A+ +R +V T I G ++ GV G HAE+ A+ A
Sbjct: 29 MAFAISLARSNVEE-GTGGPFGAAIFNRESGELVSVGVNLVVAGMNSVLHAEMVAIMAAE 87
Query: 65 EEARGAT--------AYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114
T + + EPC+ G + ++ + + V
Sbjct: 88 AVLGTYTLAVRGRFELFSSCEPCAMCLGGILWSGVERLVCAAAADDARAIGFDEGPVYPE 147
Query: 115 GLQWLSQKGIIVDRMME 131
+L ++GI ++R
Sbjct: 148 SYCYLKERGIEIERGFM 164
>gi|295701011|ref|YP_003608904.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
gi|295440224|gb|ADG19393.1| CMP/dCMP deaminase zinc-binding protein [Burkholderia sp. CCGE1002]
Length = 321
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV-TAYGGCPHAEVQALEE 62
+ ++SAA R G N VA LIV G ++ G + HAE AL
Sbjct: 134 NVHRLYLSAAFRL-LLGKGG---NTGVAALIVSSQGQILAWGKKNSDHPLLHAETSALLM 189
Query: 63 AGEEA-RGATAYVTLEPCSHY 82
G G Y TL+PC
Sbjct: 190 YGRRLPAGTRIYSTLKPCKMC 210
>gi|284028862|ref|YP_003378793.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283808155|gb|ADB29994.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 189
Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-DVCL 352
G A++ S LVD + + + G G P+ + V L
Sbjct: 120 GSASLIRSLFRQGLVDRLRVMVFPTIHGTAG-EGPVFADLPDLRLSLAGTTVLDDRLVLL 178
Query: 353 EYIGKN 358
+Y +
Sbjct: 179 DYRVGD 184
>gi|296111639|ref|YP_003622021.1| reductase (putative) [Leuconostoc kimchii IMSNU 11154]
gi|295833171|gb|ADG41052.1| reductase (putative) [Leuconostoc kimchii IMSNU 11154]
Length = 182
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359
+ + +VD + + +++G G E G + G + + +
Sbjct: 120 LLEAHMVDELWVQIVPVLLGRG--KRLFEPGDYRYRLQTIGTTQLGEMTEIHFKRVDE 175
>gi|293400428|ref|ZP_06644574.1| riboflavin biosynthesis protein RibD C- domain protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306828|gb|EFE48071.1| riboflavin biosynthesis protein RibD C- domain protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 191
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 2/115 (1%)
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302
+P + + + + I D L+ L + + + GGA++ +
Sbjct: 70 SPKQWIYPTLTSYIITHQTEASTEKIRFTMEDPVALIRHLKTQPGKDIWICGGASIVNQI 129
Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
+ + +D + ++G G +E+ + + V L Y +
Sbjct: 130 MQADSIDRYHINVIPTLLGTGIR--LFHNTDIERKLTLLHTQSYNGIVDLVYERR 182
>gi|237809037|ref|YP_002893477.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
gi|237501298|gb|ACQ93891.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187]
Length = 203
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVT----AYGGCPHAEVQAL 60
D M+ A+ +R +V L T A +IV G+++ GV H EV A+
Sbjct: 38 DEEKMTLAIELARQNV-LRGTGGPFASIIVHRQSGVLLSVGVNQVVAQNNSTLHGEVMAI 96
Query: 61 EEAGEEARGAT---------AYVTLEPCSHY 82
+ + + + + EPC+
Sbjct: 97 MLGEQRLQQFSLNSQSGEYELFTSCEPCAMC 127
>gi|298248070|ref|ZP_06971875.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297550729|gb|EFH84595.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 193
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF- 346
+++++G + + H+ L+D L+ +V+G G P L + +
Sbjct: 126 KNIVIDGSSVLVHTLAEHDLIDEYSLHVYPVVLGSGKKLFP---EGLRVHLRLIESRPLP 182
Query: 347 GSDVCLEYIG 356
V + Y
Sbjct: 183 SGVVLMRYAR 192
>gi|159045329|ref|YP_001534123.1| hypothetical protein Dshi_2789 [Dinoroseobacter shibae DFL 12]
gi|157913089|gb|ABV94522.1| hypothetical protein Dshi_2789 [Dinoroseobacter shibae DFL 12]
Length = 151
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 30 SVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEA-----GEEARGATAYVTLEP 78
V +++ G V+ R HAEV A+ A E GA YVTLEP
Sbjct: 25 PVGAVLIDPAGKVLARAGNRTRELSDPTAHAEVLAIRAACAAAGSERLPGAVLYVTLEP 83
>gi|229493829|ref|ZP_04387606.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229319266|gb|EEN85110.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 208
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L V G + + LVD +IL +V+G+G P + R G
Sbjct: 128 LQVHGSGNLCRWLFANDLVDEMILLIVPVVVGQGTRLFPDSGPDIALELAESRATSKG 185
>gi|291445197|ref|ZP_06584587.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291348144|gb|EFE75048.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 209
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G + + ++ L+D L +++G G ++ V + + +
Sbjct: 141 IIVHGSTELNRNLADADLIDRYHLLVFPVLLGA-GKRLFSTTDKDQQKLKLVEHEAYANG 199
Query: 350 V 350
+
Sbjct: 200 I 200
>gi|239941754|ref|ZP_04693691.1| hypothetical protein SrosN15_12209 [Streptomyces roseosporus NRRL
15998]
gi|239988215|ref|ZP_04708879.1| hypothetical protein SrosN1_12991 [Streptomyces roseosporus NRRL
11379]
Length = 190
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
++V G + + ++ L+D L +++G G ++ V + + +
Sbjct: 122 IIVHGSTELNRNLADADLIDRYHLLVFPVLLGA-GKRLFSTTDKDQQKLKLVEHEAYANG 180
Query: 350 V 350
+
Sbjct: 181 I 181
>gi|164686834|ref|ZP_02210862.1| hypothetical protein CLOBAR_00430 [Clostridium bartlettii DSM
16795]
gi|164604224|gb|EDQ97689.1| hypothetical protein CLOBAR_00430 [Clostridium bartlettii DSM
16795]
Length = 231
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-----YLEKNFMCVRRDYFGSD-VCL 352
SFI L D + + + G P+ E +F D + L
Sbjct: 166 NWSFIQEGLCDEVSVIMAACADGSTKTPTLFMEKEGLSDDKPVHFKLEDVKIMEGDSLWL 225
Query: 353 EYIGKN 358
Y K
Sbjct: 226 RYKIKK 231
>gi|145537828|ref|XP_001454625.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422391|emb|CAK87228.1| unnamed protein product [Paramecium tetraurelia]
Length = 1273
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 21/239 (8%), Positives = 45/239 (18%), Gaps = 5/239 (2%)
Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+ + ++ D D + + G
Sbjct: 433 CNDKSIFVCDDVCKKRKSCGVHFCQKECCPPGDQDAHLCLKVCNKQLPCGQHKCDQFCHI 492
Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193
G + Q K + G A + + I +
Sbjct: 493 GACKPCPIIINQPFYCP--CGKSVKNPPIKCGTAPPSCLEVCSKILECGHICKSLCHPGP 550
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
+ + L+ K + D
Sbjct: 551 CPNCMEQIEKLCRCKQNQPSTNCSKQAVCRSVCNKVLNCGHKCQEICQAQEECEGNGPDG 610
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312
+K ++ C + V ++ G SF+ +VD +I
Sbjct: 611 CGQKCNAKKICNHLCQEICHPNQSCPKKPCKIQV-RVVCSCGNR--ESFVECGIVDELI 666
>gi|326804530|ref|YP_004327401.1| conserved uncharacterised protein [Salmonella phage Vi01]
gi|301795180|emb|CBW37898.1| conserved uncharacterised protein [Salmonella phage Vi01]
Length = 173
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 36/158 (22%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTA-YGGCP------------- 53
M +A + + V + V C+IV + G G P
Sbjct: 11 HMRSA---AAYGVTSYARRLQVGCVIVNPETDQPVAIGWNGTPPGMPNVCEMEQHGQIVT 67
Query: 54 -----HAEVQALEEAGEEARGAT---AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
HAE AL E A T +VT PC + + + I +
Sbjct: 68 NPCVVHAEENALMRIPENADDFTGLVMFVTHSPCPNCTQKIIDSGKIDKVY--------- 118
Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143
+ G++ L GI V RM++ +
Sbjct: 119 YREPYRIMDGIKKLMNAGIEVYRMVDDMAILQHVFDYQ 156
>gi|119962068|ref|YP_947752.1| riboflavin biosynthesis protein RibD domain-containing protein
[Arthrobacter aurescens TC1]
gi|119948927|gb|ABM07838.1| RibD C-terminal domain protein [Arthrobacter aurescens TC1]
Length = 202
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340
+ + + G + S + + L+D + L+ + G G + + F
Sbjct: 115 LKEQFDDIHMFGSGHLIRSLLEADLLDRLNLFLYPLTFGS-GKRLFDDGSGVPAAFRF 171
>gi|310799415|gb|EFQ34308.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Glomerella graminicola M1.001]
Length = 247
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 24/120 (20%), Gaps = 21/120 (17%)
Query: 9 RFMSAALRFSRWHVGLTSTNPS----VACLIVKD-----GIVIGRGVTA----YGGCPHA 55
+M A + NP ++V G ++ G H
Sbjct: 63 YWMRQA-NLAL-------PNPCPFAAFGSVVVNHTAAGLGELVCTGANKNSVTGNPTFHG 114
Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115
E+ A+ + P + + + G
Sbjct: 115 EMVAINNCSAIFVDPQGPFKMTPAEALAAFADLTLYTNAESCPMCASAIRWAGFKEYVYG 174
>gi|158313351|ref|YP_001505859.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
gi|158108756|gb|ABW10953.1| bifunctional deaminase-reductase domain protein [Frankia sp.
EAN1pec]
Length = 187
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
EGG + S ++ LVD L +++G G E + V
Sbjct: 115 EGGPIAVHGSATLGKSLADAGLVDRYHLLVFPVLLGA-GKRLFSEADKDKTMLKLVE 170
>gi|291296680|ref|YP_003508078.1| bifunctional deaminase-reductase domain-containing protein
[Meiothermus ruber DSM 1279]
gi|290471639|gb|ADD29058.1| bifunctional deaminase-reductase domain protein [Meiothermus ruber
DSM 1279]
Length = 212
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 2/149 (1%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+N + H R K D AP + + Y
Sbjct: 65 PVNEMVRHIFERTGAHIMGKRMFDGGERGWPEEAPFYTPVYVLTHEKREPWVRPGGTTFY 124
Query: 270 CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ L G + + GGA V ++N +VD + + ++ G G
Sbjct: 125 FINDGPERALELARASAGSRDIRISGGADVIQQYLNLGVVDELEIALVPVLFGG-GRRLF 183
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357
F + L Y+ +
Sbjct: 184 ENLREPVPKFRIDKILDTPDATHLHYVRQ 212
>gi|229818772|ref|YP_002880298.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564685|gb|ACQ78536.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 191
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-G 347
+ + GG +A + ++ +D +I+ +V G G + + F F G
Sbjct: 125 DIYLAGGGTLAGALLSE--IDRLIVKLYPVVAGA-GKQAFGGSAFAPTAFDLTDVTTFDG 181
Query: 348 SDVCLEYIG 356
+ L Y
Sbjct: 182 GNAVLTYDR 190
>gi|104780171|ref|YP_606669.1| deoxycytidylate deaminase [Pseudomonas entomophila L48]
gi|95109158|emb|CAK13855.1| putative deoxycytidylate deaminase [Pseudomonas entomophila L48]
Length = 575
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGC 52
+FD M A S L+ V ++ K +I G G
Sbjct: 316 TFDEYAMFMAFSASLRSADLSR---QVGAVLTKHDCIIATGANDVPKAGG 362
>gi|291244537|ref|XP_002742156.1| PREDICTED: tRNA-specific adenosine deaminase 3-like [Saccoglossus
kowalevskii]
Length = 381
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 2 PVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG-GCP--- 53
VS +M A+ ++ + +IV + VI G
Sbjct: 161 TVSEKHKIQCYMEKAVAVAKTGKERGQA--PIGAVIVDPINEEVIAVCHDLRNVGRHPFF 218
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86
HA + ++ G T Y EP + S
Sbjct: 219 HAAMICIDLVAASQGGGT-YKYNEPGFYNKNSQ 250
>gi|255034559|ref|YP_003085180.1| bifunctional deaminase-reductase domain-containing protein
[Dyadobacter fermentans DSM 18053]
gi|254947315|gb|ACT92015.1| bifunctional deaminase-reductase domain protein [Dyadobacter
fermentans DSM 18053]
Length = 189
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-V 350
+ G ++ + L+D + + +G+G + V F S V
Sbjct: 121 ILGSGSLVAQLAEAGLIDHYGIMIDPVALGDG--KPLFSGMKTTLDLQLVDTRTFKSGVV 178
Query: 351 CLEYIGKNL 359
L Y+ N+
Sbjct: 179 LLNYVPLNV 187
>gi|239944540|ref|ZP_04696477.1| bifunctional deaminase-reductase domain protein [Streptomyces
roseosporus NRRL 15998]
gi|239991000|ref|ZP_04711664.1| bifunctional deaminase-reductase domain protein [Streptomyces
roseosporus NRRL 11379]
gi|291448003|ref|ZP_06587393.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
gi|291350950|gb|EFE77854.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL
15998]
Length = 201
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ S + + LVD + ++ G G + +GY + + F G +
Sbjct: 127 GSLSLCRSLLRAGLVDRFRVVMFPVITGATGSER-IYDGYPDVALDMIGHRTFDGRTQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYRPR 190
>gi|298249034|ref|ZP_06972838.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297547038|gb|EFH80905.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 223
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 10/157 (6%)
Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247
Q LV + + + + ++ P +
Sbjct: 30 FQHGGWLVPYIDEKFGEVMSEWTRHADVFLFGRKTYEMFAGSWPKSTDPVEPLNTRPKFV 89
Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307
+ N I ++++ + G + V G + + + L
Sbjct: 90 ASRTLHK-------VNWNNSILLKGDVAQEVVKLKAQEG-GEIQVHGSGNLIQTLLQHNL 141
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
VD++ +++ +V+G G E G + +F V
Sbjct: 142 VDTLRIWQFPVVLGTG--KRLFEGGTIPCSFRLVDTQ 176
>gi|169609901|ref|XP_001798369.1| hypothetical protein SNOG_08042 [Phaeosphaeria nodorum SN15]
gi|160701940|gb|EAT84318.2| hypothetical protein SNOG_08042 [Phaeosphaeria nodorum SN15]
Length = 450
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY 49
+++ L + +IV+ G VIG+G Y
Sbjct: 6 YLNLCLDQAAKSPLRYRH----GAIIVRGGKVIGQGYNDY 41
>gi|323526415|ref|YP_004228568.1| bifunctional deaminase-reductase domain-containing protein
[Burkholderia sp. CCGE1001]
gi|323383417|gb|ADX55508.1| bifunctional deaminase-reductase domain protein [Burkholderia sp.
CCGE1001]
Length = 204
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + + LVD L+ +V+G G G + V
Sbjct: 132 GSTVLLQTLLAHDLVDEYRLFIFPVVLGSG--KRLFGSGTVPAALKPVES 179
>gi|156186024|gb|ABU55330.1| cytidine and deoxycytidylate deaminase family protein
[Callosobruchus chinensis]
Length = 71
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 41 VIGRGVT-AYGGCPHAEVQALEEAGEEARGATA-----YVTLEPCSHY 82
V+ + HAE+ A+++ E +T YVTLEPC
Sbjct: 5 VVSSAHNISNDPTAHAEMFAIKQECELLSTSTLYDSDIYVTLEPCPMC 52
>gi|46138639|ref|XP_391010.1| hypothetical protein FG10834.1 [Gibberella zeae PH-1]
Length = 173
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVI----------GRGVTAYGG 51
V+ D + A+ + + + + ++V D V+ G +
Sbjct: 2 VNEQDREHLRLAVSLAHEAL--KAGDAPFGSVLVSSDNKVLQTDRNRTVTGSDGDSRPDA 59
Query: 52 CPHAEV-QA----LEEAGEEARGATAYVTLEPCSHYGRSPP 87
H E A L + EE + +T Y + E C+ +
Sbjct: 60 TLHPEFTLARWAQLNLSAEERKNSTVYTSGEHCAMCSAAHA 100
>gi|39995669|ref|NP_951620.1| hypothetical protein GSU0562 [Geobacter sulfurreducens PCA]
gi|39982432|gb|AAR33893.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
Length = 198
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL--------LVEGGAA 297
E+ P + A + + + D ++ V + L V G +
Sbjct: 72 WPTHESAWPGINSATKYVVSDTLTESLWDNTVIIKDHVVEEIRRLKQQVGPDLQVYGSSN 131
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ + + L D + L + +G G EG + F + +
Sbjct: 132 LLQTLLQHDLADELWLKIFPVTLGTG--KRLFGEGTMPAAFTLMHSE 176
>gi|316932264|ref|YP_004107246.1| bifunctional deaminase-reductase domain-containing protein
[Rhodopseudomonas palustris DX-1]
gi|315599978|gb|ADU42513.1| bifunctional deaminase-reductase domain protein [Rhodopseudomonas
palustris DX-1]
Length = 178
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+++ +L G + V+GG V SF+ +RL+ + + + +++GEG S +
Sbjct: 99 QVMEMLEAEGHRRVYVDGG-KVIQSFLRARLIADMTITQVPVLLGEG--RSLFGRTASDI 155
Query: 337 NFMCVRRDYF 346
F
Sbjct: 156 PLTHEDTKSF 165
>gi|229491373|ref|ZP_04385197.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
gi|229321658|gb|EEN87455.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus
erythropolis SK121]
Length = 191
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+ + GG +A + +D +I+ R +V G GIP + + F +
Sbjct: 124 QDIWLCGGGTLAGELLPE--IDELIIKRYPVVAGA-GIPM-IRGNFEPTLFTPTATESLD 179
Query: 348 SDVCLEYIGKN 358
+ ++ +N
Sbjct: 180 DGASITWLKRN 190
>gi|62204160|gb|AAH92434.1| CDADC1 protein [Homo sapiens]
Length = 251
Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|226305935|ref|YP_002765895.1| hypothetical protein RER_24480 [Rhodococcus erythropolis PR4]
gi|226185052|dbj|BAH33156.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 191
Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+ ++ L + + GG +A + +D +I+ R +V G GIP + Y
Sbjct: 111 PRAVVRSLKEEEGQDIWLCGGGTLAGELLPE--IDELIVKRYPVVAGA-GIPM-IRGNYA 166
Query: 335 EKNFMCVRRDYFGSDVCLEYIGKN 358
F + + ++ +N
Sbjct: 167 PTLFTPTATESLDDGASITWLKRN 190
>gi|297204547|ref|ZP_06921944.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
gi|197710609|gb|EDY54643.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sviceus ATCC 29083]
Length = 201
Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
V G +A + + LVD L ++IG G +G + V
Sbjct: 129 VVGSGDLAQTLMQHSLVDEYRLTIHPVIIGTG--KRLFADGAIPTALEPVSV 178
>gi|238059955|ref|ZP_04604664.1| dihydrofolate reductase [Micromonospora sp. ATCC 39149]
gi|237881766|gb|EEP70594.1| dihydrofolate reductase [Micromonospora sp. ATCC 39149]
Length = 201
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+++ G A + ++RL+D L +++ G + ++N + + + +
Sbjct: 133 IIIHGSATLNRELADARLIDRYHLLVFPVLL-SAGKRLFSDTDRDKQNLKLIESESYANG 191
Query: 350 V-CLEY 354
+ L Y
Sbjct: 192 IQKLVY 197
>gi|47124267|gb|AAH70238.1| CDADC1 protein [Homo sapiens]
Length = 251
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|108805662|ref|YP_645599.1| tRNA-adenosine deaminase [Rubrobacter xylanophilus DSM 9941]
gi|108766905|gb|ABG05787.1| tRNA-adenosine deaminase [Rubrobacter xylanophilus DSM 9941]
Length = 167
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62
D R M V ++ + V+ HAE+ A+
Sbjct: 18 DLRMMRL--ALRAAREAAGRGEVPVGAVVARGEEVLALASNEREATGDPTAHAELLAIRR 75
Query: 63 A-----GEEARGATAYVTLEPCSHY 82
A G G T Y TLEPC
Sbjct: 76 AAAALGGWRLTGCTLYSTLEPCPMC 100
>gi|311894188|dbj|BAJ26596.1| hypothetical protein KSE_07560 [Kitasatospora setae KM-6054]
Length = 190
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
++V G A + H+ ++ L+D L +++G G+ + + V
Sbjct: 122 IIVHGSARLNHALSDAGLIDRYHLLVFPLLLGA-GLRLFSDTDKDTQKLELVE 173
>gi|70947235|ref|XP_743253.1| cytidine and deoxycytidylate deaminase family [Plasmodium
chabaudi chabaudi]
gi|56522661|emb|CAH77065.1| cytidine and deoxycytidylate deaminase family, putative
[Plasmodium chabaudi chabaudi]
Length = 169
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 1 MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCP 53
M + D F++ AL + + + + + CL++ + ++ A GC
Sbjct: 1 MAELTNDEAIDFLNQALNEAEKSLQVETKEMPIFCLLINEEKQIVSSSYNYTNEAKNGCR 60
Query: 54 HAEVQALEE 62
H E+ A+++
Sbjct: 61 HCEIIAIDK 69
>gi|33861475|ref|NP_893036.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33634052|emb|CAE19377.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 165
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 33 CLIVK-DGIVIGRGVTAY----GGCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
+I+ +G IGRG HAE+ AL +A + V LEPC+
Sbjct: 40 AVIIDENGRCIGRGSNKREINNDPLGHAELIALRQASWIKNDWRFNECSIIVNLEPCTMC 99
>gi|298244794|ref|ZP_06968600.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297552275|gb|EFH86140.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 201
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 2/131 (1%)
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
+ + L K V V + +
Sbjct: 48 MNRQMNLPFDLLLGRKTFEIWAPFWPHHADIWPGVNPATKYVASNSMTSSEWQPSVFLGG 107
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
D+ + ++ L + L V G A + + + LVD+ L + +G G +G
Sbjct: 108 DIAEKVSKLKHQPGPDLHVYGSANLLQTLMKHDLVDAFWLKIFPLTLGSG--KRLFTDGT 165
Query: 334 LEKNFMCVRRD 344
+ F
Sbjct: 166 IPAAFKVTESQ 176
>gi|253987602|ref|YP_003038958.1| deoxycytidylate deaminase-like protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779052|emb|CAQ82212.1| similar to deoxycytidylate deaminase-related protein [Photorhabdus
asymbiotica]
Length = 502
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA 48
+FD M A S L+ V ++ K+ +I G
Sbjct: 238 TFDEYAMFMAFSASLRSGDLSR---QVGAVLTKNKNIISTGAND 278
>gi|297848122|ref|XP_002891942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337784|gb|EFH68201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 69
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT 47
M+ A + N V +V ++G+++G G
Sbjct: 1 MAIAFLSAERSK---DPNRHVGACLVSQNGVILGIGYN 35
>gi|294670|gb|AAA90930.1| putative [Gordonia rubripertincta]
Length = 175
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVAC-----LIVKDGIVIGRGVTAY----GGCPHAEVQAL 60
++ AL + + + DG ++ RG H E A
Sbjct: 32 MLAVALEEAHIGLAE-------GASDWRSIFTLDGELVSRGHNQRIQDNDPSSHGETDAF 84
Query: 61 EEAGEEA--RGATAYVTLEPCSHY 82
AG R TL PC +
Sbjct: 85 RNAGRHTTWRDKILVTTLAPCWYC 108
>gi|323703213|ref|ZP_08114866.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Desulfotomaculum nigrificans DSM 574]
gi|323531872|gb|EGB21758.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Desulfotomaculum nigrificans DSM 574]
Length = 515
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93
+I K+G +IG G A ALE+AGE+A+GA I
Sbjct: 422 VISKNGQIIGVGAGQMNRVG-AARIALEQAGEKAKGAVMASDAFFPFRDTIDEAARAGIT 480
Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQW 118
+ ++ + G+
Sbjct: 481 AVIQPGGSIRDEESIQACNEHGMAM 505
>gi|190572874|ref|YP_001970719.1| putative nucleotide deaminase [Stenotrophomonas maltophilia K279a]
gi|254523836|ref|ZP_05135891.1| CMP/dCMP deaminase, zinc-binding protein [Stenotrophomonas sp.
SKA14]
gi|190010796|emb|CAQ44405.1| putative nucleotide deaminase [Stenotrophomonas maltophilia K279a]
gi|219721427|gb|EED39952.1| CMP/dCMP deaminase, zinc-binding protein [Stenotrophomonas sp.
SKA14]
Length = 186
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 5 SFDARF------MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCP---- 53
D R+ ++ A+ SR +V S P ++ D VI GV
Sbjct: 19 DLDRRYPGDEAKVALAIELSRLNVEHASGGP-FGAVVFGPDDKVIAAGVNRVMPHATSLA 77
Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
HAE A A + + L P + S PC Q
Sbjct: 78 HAENMAYMLAQQRLQTPRLNAVLSPVTLATSSQPCCQC 115
>gi|315505749|ref|YP_004084636.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|315412368|gb|ADU10485.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 213
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+++ GGA V + + +VD + L + +++G G + ++ V
Sbjct: 141 VVIGGGADVIRQALAAGVVDELGLSTAPVILGRGKRLFEGFDRDVDLEIRAVHHSR 196
>gi|302867849|ref|YP_003836486.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302570708|gb|ADL46910.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
Length = 213
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
+++ GGA V + + +VD + L + +++G G + ++ V
Sbjct: 141 VVIGGGADVIRQALAAGVVDELGLSTAPVILGRGKRLFEGFDRDVDLEIRAVHHSR 196
>gi|2358238|gb|AAB69099.1| dCMP deaminase [Mycobacterium phage D29]
Length = 78
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 54 HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPC 88
HAE AL E+ GAT YVT EPC
Sbjct: 31 HAEANALLYCDREDLIGATLYVTREPCYACSNLIAA 66
>gi|222475328|ref|YP_002563745.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Florida]
gi|222419466|gb|ACM49489.1| cytosine deaminase (ssnA) [Anaplasma marginale str. Florida]
Length = 154
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-----YGGCPHAEVQALEEAG 64
+M A++ + V ++V + V+ HAE+ A+ EA
Sbjct: 9 YMRLAMQEAVSSPAEV----PVGAVVVDERGVVVSSKHNLTLRNSDPTAHAEMLAIREAC 64
Query: 65 -----EEARGATAYVTLEPCSHYGR 84
YVTLEPC+
Sbjct: 65 LHLSTHVLDNCDMYVTLEPCAMCAY 89
>gi|183219829|ref|YP_001837825.1| hypothetical protein LEPBI_I0407 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909963|ref|YP_001961518.1| dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167774639|gb|ABZ92940.1| Dihydrofolate reductase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167778251|gb|ABZ96549.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 187
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDV 350
G ++A N L+D + +++G+G V F +
Sbjct: 118 CIGSLSLASQLSNFGLIDEYRIVIHPVIVGKGPRLFSNHTLDKTLRLDLVSSKTFPSGNT 177
Query: 351 CLEY 354
L Y
Sbjct: 178 ALHY 181
>gi|302559427|ref|ZP_07311769.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
gi|302477045|gb|EFL40138.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces griseoflavus Tu4000]
Length = 191
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ + + + LVD + + ++ GE G+ + + + + G L
Sbjct: 126 GSLSMNRALMAAGLVDRVQVTIFPVITGETGLDRIFQGAA-DFDLELLEHHTLDGRTQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 TYRP 188
>gi|330688469|ref|NP_001193447.1| cytidine and dCMP deaminase domain-containing protein 1 [Bos
taurus]
gi|297469011|ref|XP_002706584.1| PREDICTED: cytidine and dCMP deaminase domain containing 1 [Bos
taurus]
gi|296481889|gb|DAA24004.1| cytidine and dCMP deaminase domain containing 1 [Bos taurus]
Length = 515
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 25/262 (9%), Positives = 67/262 (25%), Gaps = 9/262 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY-------GR 84
++VK+ ++ G+ HA AL + G + + Y + +PCS G
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGKIALIKHGSKLKNCDLYFSRKPCSACLKMIVNAGV 147
Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
+ + + + S V +++ +
Sbjct: 148 NRISYWPADPEISLLTEASGFEDAKLDAKAVERLKSNSRAHVCVLLQPLVCYMVQFVEET 207
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
+ + + N + C I + V ++ L ++
Sbjct: 208 SYKCDFIQKISKTLPDTNFDFYSECKQERIKEYEMIFLVSNEEMHKQILMTIGLENLCEN 267
Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264
P + +++ + + I ++ +A +
Sbjct: 268 PYFSNLRQNMKDLVLLLAAVASSVPNFKHYGFYCGNTEHSNEIHNQSLPQEIARHCMIQA 327
Query: 265 INIIYCDCRDLKKLLTILVGRG 286
+ Y + ++ G
Sbjct: 328 RLLAYRTEDHKTGVGAVIWAEG 349
>gi|71051975|gb|AAH32889.1| CDADC1 protein [Homo sapiens]
Length = 153
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|310819974|ref|YP_003952332.1| cytidine and deoxycytidylate deaminase zinc-binding
domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|309393046|gb|ADO70505.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
protein [Stigmatella aurantiaca DW4/3-1]
Length = 154
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 17/66 (25%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-------------EARGATAYVTL 76
V + V G VIG G H A G T YVTL
Sbjct: 24 PVGAVAVHQGQVIGTGFNRREIDRHP----FAHAELLALDAAARSLGVWRLTGVTLYVTL 79
Query: 77 EPCSHY 82
EPC+
Sbjct: 80 EPCAMC 85
>gi|256826363|ref|YP_003150323.1| tRNA-adenosine deaminase [Kytococcus sedentarius DSM 20547]
gi|256689756|gb|ACV07558.1| tRNA-adenosine deaminase [Kytococcus sedentarius DSM 20547]
Length = 159
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 20/89 (22%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA--- 63
++ ALR + + + V +++ G VIGRG AE L A
Sbjct: 13 EAWIGHALRAGEQAL--AAGDVPVGAVVIGPGGQVIGRGWNRRE----AEGDPLAHAEVV 66
Query: 64 ----------GEEARGATAYVTLEPCSHY 82
G VTLEPC
Sbjct: 67 AMRAAAAVRGGWRLEDCALAVTLEPCLMC 95
>gi|86358425|ref|YP_470317.1| putative pyrimidine reductase protein [Rhizobium etli CFN 42]
gi|86282527|gb|ABC91590.1| putative pyrimidine reductase protein [Rhizobium etli CFN 42]
Length = 221
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
LL +G + + + + L+D + L +++G G
Sbjct: 126 DLLTQGSSGLVQTLLAHDLIDELRLLTFPLILGPGKRLFGHGTKPEALKLTANSV 180
>gi|115378509|ref|ZP_01465666.1| tRNA-specific adenosine deaminase [Stigmatella aurantiaca
DW4/3-1]
gi|115364478|gb|EAU63556.1| tRNA-specific adenosine deaminase [Stigmatella aurantiaca
DW4/3-1]
Length = 148
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 17/66 (25%)
Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-------------EARGATAYVTL 76
V + V G VIG G H A G T YVTL
Sbjct: 18 PVGAVAVHQGQVIGTGFNRREIDRHP----FAHAELLALDAAARSLGVWRLTGVTLYVTL 73
Query: 77 EPCSHY 82
EPC+
Sbjct: 74 EPCAMC 79
>gi|171689714|ref|XP_001909797.1| hypothetical protein [Podospora anserina S mat+]
gi|170944819|emb|CAP70931.1| unnamed protein product [Podospora anserina S mat+]
Length = 190
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+ + GG +A + LVD++ + +++G G+ +G +
Sbjct: 114 DIWLMGGGKLAGEMLRLGLVDTVEVAVMPVLLG-EGVKMFEGKGRED 159
>gi|134103028|ref|YP_001108689.1| dihydrofolate reductase [Saccharopolyspora erythraea NRRL 2338]
gi|291005216|ref|ZP_06563189.1| dihydrofolate reductase [Saccharopolyspora erythraea NRRL 2338]
gi|133915651|emb|CAM05764.1| possible dihydrofolate reductase [Saccharopolyspora erythraea NRRL
2338]
Length = 194
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+ + GG ++A + +D +++ + +G G E + F R F S
Sbjct: 130 IWLVGGGSLAAALRPE--IDELVIKLHPVTVGNGIRM--FEGDFDPAQFRLTRSQTFESG 185
Query: 350 VC-LEYIGK 357
V L Y +
Sbjct: 186 VLHLTYERR 194
>gi|299138418|ref|ZP_07031597.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298599664|gb|EFI55823.1| bifunctional deaminase-reductase domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 215
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 1/150 (0%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ H + G T + D N + DS
Sbjct: 37 QWFFHTKTFHAMHGKEGGSTDMDDTFARAAMDNFGAFILGRNMFGPVRGPWPDDSWKGWW 96
Query: 240 ALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P + + + L G + + GG +
Sbjct: 97 GDDPPYHAPTFVLTHHEREPLVMQGGTTFYFVTGGIEEALRRAKQAAGDKDIKIGGGVST 156
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
++ + VDS+ L S +++G+G P
Sbjct: 157 VRQYLQAGWVDSLHLAFSPVLLGQGEALFP 186
>gi|288941195|ref|YP_003443435.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180]
gi|288896567|gb|ADC62403.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum DSM
180]
Length = 189
Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 17/88 (19%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPHAEVQALEEAG 64
M+ L +R ++ + + I + G +I GV HAE+ A+ A
Sbjct: 33 MALVLDLARENI-RAGADGPFSAAIFERRSGRLIAAGVNRVVSSGCSIAHAEMVAIGIAQ 91
Query: 65 EEA----------RGATAYVTLEPCSHY 82
+ G + + EPC+
Sbjct: 92 QRLGSFDLRQAVPGGCVLFTSAEPCAMC 119
>gi|254525381|ref|ZP_05137433.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Prochlorococcus marinus str. MIT 9202]
gi|221536805|gb|EEE39258.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Prochlorococcus marinus str. MIT 9202]
Length = 216
Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 50/162 (30%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
IT+ +A S D I G + + + + DA + G+GT+ A +
Sbjct: 1 MSIPRITIVVASSLDGRIAFPEGGESHLGSEEDRKILDQNLSMVDATIFGLGTLKAHEST 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
+ + + + S K I +
Sbjct: 61 YLIKNHNRNNEAKISKSQPISIVASNSKKFNSNWKYFRQPIRRWLISSSKVDNSSNNDFE 120
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
KK L L +G+ L + GGA + +SFI L+
Sbjct: 121 KQLFFEDSWKKTLISLKKQGINDLALLGGAQLINSFIKEDLI 162
>gi|300775815|ref|ZP_07085676.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505842|gb|EFK36979.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 174
Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+ + + G+ V + + GGA ++FI+ LV I + I+ G G I E + +
Sbjct: 90 EAVEYMSGKDVQEIAIGGGAGTFNAFIDKDLVTDIYFNVNPIITGAGAILGNNSELHSKF 149
Query: 337 NFM 339
+
Sbjct: 150 KYK 152
>gi|146318731|ref|YP_001198443.1| dihydrofolate reductase [Streptococcus suis 05ZYH33]
gi|145689537|gb|ABP90043.1| Dihydrofolate reductase [Streptococcus suis 05ZYH33]
Length = 77
Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + GGA++ + + ++D +I+ ++G GIP
Sbjct: 10 DIWLSGGASLVQDCLEAGVIDHLIIGIIPTILG-DGIPLF 48
>gi|300773578|ref|ZP_07083447.1| dihydrofolate reductase [Sphingobacterium spiritivorum ATCC 33861]
gi|300759749|gb|EFK56576.1| dihydrofolate reductase [Sphingobacterium spiritivorum ATCC 33861]
Length = 184
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
GG + I LVD + +++GEG E +L +N
Sbjct: 120 GGIELPARLIELGLVDEFHILVHPVIVGEGRR--LFTEMHLPENL 162
>gi|229818575|ref|YP_002880101.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
gi|229564488|gb|ACQ78339.1| bifunctional deaminase-reductase domain protein [Beutenbergia
cavernae DSM 12333]
Length = 202
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
L V G A+ + + LVD + L +++G+G P + + R D G
Sbjct: 127 DLQVHGSGALTRWLLANDLVDEMTLITIPVILGQGARLFPDTGPDRALDMIESRVDSKG 185
>gi|229542647|ref|ZP_04431707.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Bacillus coagulans 36D1]
gi|229327067|gb|EEN92742.1| phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
cyclohydrolase [Bacillus coagulans 36D1]
Length = 509
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 14 ALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72
AL+ + V +N ++V D +G G AE+ AL +AGE+A+GA
Sbjct: 399 ALKLAWKVVKHVKSN----AIVVTDTEKTLGIGAGQMNRVGAAEI-ALAQAGEKAKGAAM 453
>gi|330832894|ref|YP_004401719.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptococcus suis ST3]
gi|329307117|gb|AEB81533.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptococcus suis ST3]
Length = 113
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + GGA++ + + ++D +I+ ++G GIP
Sbjct: 46 DIWLFGGASLVQDCLEAGVIDHLIIGIIPTILG-DGIPLF 84
>gi|313231032|emb|CBY19030.1| unnamed protein product [Oikopleura dioica]
Length = 75
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 4 SSFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGVTAYG 50
+ D ++ ++ G V CLIV + IG+G
Sbjct: 8 TQDDFYWLEKTFAYAEEALDRGEV----PVGCLIVYENREIGKGSNNSN 52
>gi|284031852|ref|YP_003381783.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283811145|gb|ADB32984.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 190
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
GA VA + + L+D + ++ ++G G
Sbjct: 130 GADVARHLLRAGLLDEVWIHIVPRLLGAGTR 160
>gi|146320935|ref|YP_001200646.1| dihydrofolate reductase [Streptococcus suis 98HAH33]
gi|145691741|gb|ABP92246.1| Dihydrofolate reductase [Streptococcus suis 98HAH33]
gi|292558405|gb|ADE31406.1| Dihydrofolate reductase [Streptococcus suis GZ1]
gi|319758187|gb|ADV70129.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptococcus suis JS14]
Length = 77
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + GGA++ + + ++D +I+ ++G GIP
Sbjct: 10 DIWLFGGASLVQDCLEAGVIDHLIIGIIPTILG-DGIPLF 48
>gi|223932339|ref|ZP_03624342.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptococcus suis 89/1591]
gi|223899020|gb|EEF65378.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptococcus suis 89/1591]
Length = 123
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + GGA++ + + ++D +I+ ++G GIP
Sbjct: 56 DIWLFGGASLVQDCLEAGVIDHLIIGIIPTILG-DGIPLF 94
>gi|284038144|ref|YP_003388074.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
DSM 74]
gi|283817437|gb|ADB39275.1| bifunctional deaminase-reductase domain protein [Spirosoma linguale
DSM 74]
Length = 199
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V GGA S L+D + I++G G + ++ + F S
Sbjct: 123 DMVVFGGAEFVASLARLDLIDEYRIKLEPIILGTG--KALFKDVTERIRLTLTKAKSFDS 180
Query: 349 DVCLEYI 355
V Y
Sbjct: 181 GVVGLYY 187
>gi|209879740|ref|XP_002141310.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
muris RN66]
gi|209556916|gb|EEA06961.1| cytidine/deoxycytidylate deaminase family protein [Cryptosporidium
muris RN66]
Length = 314
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 32 ACLIVKDGIVIGRG---VTAYGGCPHAEVQALEEAGEEAR 68
C+IV + IVIG G H + A+ ++ +
Sbjct: 173 GCVIVLNDIVIGYGLDKRHVSYPWDHPAIDAIRNTSDKLK 212
>gi|302538918|ref|ZP_07291260.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
gi|302447813|gb|EFL19629.1| deaminase-reductase domain-containing protein [Streptomyces sp. C]
Length = 190
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
+++ G A + ++ L+D L +++G G + V + + +
Sbjct: 122 IIIHGSATLNRGLSDAGLIDRYHLLVFPLLLGA-GKRLFSGSDRDTQKLKLVEHEAYAN 179
>gi|302519744|ref|ZP_07272086.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
gi|318060490|ref|ZP_07979213.1| hypothetical protein SSA3_21288 [Streptomyces sp. SA3_actG]
gi|318079820|ref|ZP_07987152.1| hypothetical protein SSA3_24836 [Streptomyces sp. SA3_actF]
gi|302428639|gb|EFL00455.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. SPB78]
Length = 169
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 2/120 (1%)
Query: 225 DPHFKLSLDSKIIKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
+ D P V + + D + L
Sbjct: 34 PQEGEWPDDGWRGWWGEEPPFRTPVVVLTHYAREPLHFDNGTSFHFMDATPKEALARAQE 93
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GG + F+ + LVD + L I +G G+ ++ F
Sbjct: 94 LADGKDVRIGGGPSTIRQFLAADLVDFMHLVTVPITLG-TGVLLWEGLDGIQDRFTVEST 152
>gi|258651830|ref|YP_003200986.1| bifunctional deaminase-reductase domain-containing protein
[Nakamurella multipartita DSM 44233]
gi|258555055|gb|ACV77997.1| bifunctional deaminase-reductase domain protein [Nakamurella
multipartita DSM 44233]
Length = 187
Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEY 354
L+D +L + ++IG G+P G N V F G + Y
Sbjct: 136 GLIDEYVLATAPVLIGG-GLPFFTALGNW-VNLNLVETRTFPGGVLLTRY 183
>gi|227536536|ref|ZP_03966585.1| dihydrofolate reductase [Sphingobacterium spiritivorum ATCC 33300]
gi|227243613|gb|EEI93628.1| dihydrofolate reductase [Sphingobacterium spiritivorum ATCC 33300]
Length = 201
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
GG + I LVD + +++GEG E +L +N
Sbjct: 137 GGIELPARLIELGLVDEFHILVHPVIVGEGRR--LFTEMHLPENL 179
>gi|84497139|ref|ZP_00995961.1| hypothetical protein JNB_13133 [Janibacter sp. HTCC2649]
gi|84382027|gb|EAP97909.1| hypothetical protein JNB_13133 [Janibacter sp. HTCC2649]
Length = 191
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ + + + LVD + + ++ G+ G P+ G + + + G L
Sbjct: 126 GSLSMNRALLAAGLVDRVQVSVFPVITGQNGTE-PIFGGAADFDLELLEALTLDGRTQEL 184
Query: 353 EYIG 356
Y
Sbjct: 185 TYRP 188
>gi|297572374|gb|ADI46542.1| integrin beta 1 [Capsaspora owczarzaki]
Length = 1064
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 19/230 (8%), Positives = 34/230 (14%), Gaps = 9/230 (3%)
Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
+ S C VC D+ + + Q G +
Sbjct: 631 GNCTAGSCVCEPGWTGSSCSCSTVCPDNCSGHGTCQCGVCRCQAGYSGLNCACNNNCPSR 690
Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
+ ++ S
Sbjct: 691 GGLTCSGHGQCNNCDGTCTCDVGYQSKPDCSCSDAP---CPNGCSGHGTCTCGVCTCSGL 747
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA---PVIIVTENDDPV 255
AD N + + + + D
Sbjct: 748 YTGADCSCWNVGCNSASNCNSALGHGSCNCSQCVCTGNYTPETECLCDRTEHCAGWDGTS 807
Query: 256 LALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAAVAHSF 302
+ C + G LVE G + F
Sbjct: 808 ECSGHGTCVSDATQCHQCKCDADAQGSPLYSGASCNCSLVECGGETINGF 857
>gi|297162755|gb|ADI12467.1| hypothetical protein SBI_09349 [Streptomyces bingchenggensis BCW-1]
Length = 204
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+++ GG A S +++ L+D++ L+ + +V+G G +PL G + +
Sbjct: 139 DVVLMGGGATIASALDTGLLDTLTLHLAPVVLGAG---TPLFTGGAPRTLVQRSVT 191
>gi|73988990|ref|XP_534116.2| PREDICTED: similar to cytidine and dCMP deaminase domain containing
1 isoform 1 [Canis familiaris]
Length = 515
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNTKIV--GLHCSSEDLHAGKIALIKHGARLKNCDLYFSRKPCSAC 138
>gi|291614788|ref|YP_003524945.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
gi|291584900|gb|ADE12558.1| bifunctional deaminase-reductase domain protein [Sideroxydans
lithotrophicus ES-1]
Length = 203
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%)
Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255
G D + + G E ++ + + T A V
Sbjct: 34 GWSFGGYWDDVMGGIMQGFMERPFELLLGRRTYDIFAGYWPTATTDEAIAKPFNSTRKYV 93
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
++ + + + D+ L L L V G + + + + L+D + ++
Sbjct: 94 VSHKQMELSWHNSALITGDVIGELRKLKQMDAPDLWVHGSGKLIQTLLANGLIDLMHVWI 153
Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ +G G EG + F V
Sbjct: 154 FPVTLGPG--KRLFAEGTRPEGFKVVDTK 180
>gi|126178774|ref|YP_001046739.1| cytosine deaminase [Methanoculleus marisnigri JR1]
gi|125861568|gb|ABN56757.1| Cytosine deaminase [Methanoculleus marisnigri JR1]
Length = 140
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQALEEAGE- 65
M A+ + + + ++V+DG R V HAE+ L AG
Sbjct: 1 MKCAVEEAEAGLREGGI--PIGSVLVRDGRIIGRGRNRRVQNDDPVLHAEIDCLRNAGRI 58
Query: 66 -EARGATAYVTLEPCSHY 82
T Y TL PC
Sbjct: 59 GSYAECTLYSTLMPCYLC 76
>gi|271965906|ref|YP_003340102.1| bifunctional deaminase-reductase-like protein [Streptosporangium
roseum DSM 43021]
gi|270509081|gb|ACZ87359.1| bifunctional deaminase-reductase-like protein [Streptosporangium
roseum DSM 43021]
Length = 214
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 35/144 (24%)
Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239
+ + G L D N E
Sbjct: 38 WSWAGATASWVARTDPGGTRGLDDHLTRDHTRNIGAEIMGRNKFGPQRGPWENHEWQGWW 97
Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
P +F + + D R + L + + GG A
Sbjct: 98 GDTPPFRTPVFVLTHHERPSFTLADTTFHFLDARPAEALERAKQAADGRDVRLGGGVATV 157
Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323
F+ + LVD++ + + + +G G
Sbjct: 158 REFLEADLVDTVHIAVAPVDLGRG 181
>gi|229489414|ref|ZP_04383277.1| DNA-binding protein [Rhodococcus erythropolis SK121]
gi|229323511|gb|EEN89269.1| DNA-binding protein [Rhodococcus erythropolis SK121]
Length = 213
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 34/148 (22%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ + G L D N E
Sbjct: 33 HGEMFAWAGATASWPNRTDPGGSRGLDDYFTRDFSNNIGAEIMGRNKFSPYRGPWENLEW 92
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
P + +F + + D L + + GG
Sbjct: 93 QGWWGDEPPFHTPVFVLTHHVRPSFTLSDTTFHFVDADPATALAQAREAAQGKDVRLGGG 152
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ F+++ LVD++ + S I G G
Sbjct: 153 VSTIREFLDADLVDTMHIAVSPIEFGSG 180
>gi|311107007|ref|YP_003979860.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Achromobacter xylosoxidans A8]
gi|310761696|gb|ADP17145.1| cytidine and deoxycytidylate deaminase zinc-binding region family
protein [Achromobacter xylosoxidans A8]
Length = 164
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-TAYGG--CPHAEVQ 58
++ D + ++ + ++ + ++V G V+ A G H E +
Sbjct: 2 ITETDKKHLARCVELAKQALDAGDE--PFGSVLVSPSGEVLFEDHNHASSGDRTRHPEFE 59
Query: 59 ----ALEE--AGEEARGATAYVTLEPCSHYGRSP 86
A A E A T Y + E CS +
Sbjct: 60 IARWAANNVPAAERAA-CTVYTSGEHCSMCASAH 92
>gi|91087043|ref|XP_974513.1| PREDICTED: similar to cytidine and deoxycytidylate deaminase
zinc-binding region [Tribolium castaneum]
gi|270010523|gb|EFA06971.1| hypothetical protein TcasGA2_TC009931 [Tribolium castaneum]
Length = 317
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV--TAYGGCPHAEVQAL 60
A FM A+ T S ++V G V+ G T HA + A+
Sbjct: 151 EKHAEFMRIAIDICEI----TGVRES--AVVVDPVGGTVVAFGFDLTQEYPVKHAVMVAI 204
Query: 61 EEAGEEARGATA 72
+E +G
Sbjct: 205 DEVARTQKGGVW 216
>gi|326331654|ref|ZP_08197942.1| hypothetical protein NBCG_03093 [Nocardioidaceae bacterium Broad-1]
gi|325950453|gb|EGD42505.1| hypothetical protein NBCG_03093 [Nocardioidaceae bacterium Broad-1]
Length = 195
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342
GA VA + + + +D I ++ +++G G P + VR
Sbjct: 132 GAGVAQALLAAGQLDEIEIHLVPVLLGAGRRLFPDDGVG-PVELELVR 178
>gi|293370727|ref|ZP_06617276.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|294810240|ref|ZP_06768904.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|292634197|gb|EFF52737.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|294442554|gb|EFG11357.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 121
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 278 LLTILVGRG--VTSLL-VEGGAA-VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+L G + LL V G A+ + ++D IILY + G G +
Sbjct: 36 VLQEWREEGGSICHLLEVTAGNTEYANGLLRMNVIDEIILYVVPTIDGNGAH--FFKSAL 93
Query: 334 LEKNFMCVRRDYF-GSDVCLEYIGK 357
++ + + + L Y +
Sbjct: 94 PMNDWRLMENKTYRDGVIRLTYHKE 118
>gi|312195450|ref|YP_004015511.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
gi|311226786|gb|ADP79641.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c]
Length = 187
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG + S ++ LVD L +++G G + V +
Sbjct: 115 EGGPIAVHGSARLGKSLADAGLVDRYHLLVFPVLLGAGER-LFSAADKDKTMLRLVESEA 173
Query: 346 F 346
+
Sbjct: 174 Y 174
>gi|320166340|gb|EFW43239.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 1035
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 19/230 (8%), Positives = 34/230 (14%), Gaps = 9/230 (3%)
Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
+ S C VC D+ + + Q G +
Sbjct: 586 GNCTAGSCVCEPGWTGSSCSCSTVCPDNCSGHGTCQCGVCRCQAGYSGLNCACNNNCPSR 645
Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198
+ ++ S
Sbjct: 646 GGLTCSGHGQCNNCDGTCTCDVGYQSKPDCSCSDAP---CPNGCSGHGTCTCGVCTCSGL 702
Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA---PVIIVTENDDPV 255
AD N + + + + D
Sbjct: 703 YTGADCSCWNVGCNSASNCNSALGHGSCNCSQCVCTGNYTPETECLCDRTEHCAGWDGTS 762
Query: 256 LALAFRKKNINIIYCDCRDLKKLLT---ILVGRGVTSLLVEGGAAVAHSF 302
+ C + G LVE G + F
Sbjct: 763 ECSGHGTCVSDATQCHQCKCDADAQGSPLYSGASCNCSLVECGGETINGF 812
>gi|291299026|ref|YP_003510304.1| bifunctional deaminase-reductase domain-containing protein
[Stackebrandtia nassauensis DSM 44728]
gi|290568246|gb|ADD41211.1| bifunctional deaminase-reductase domain protein [Stackebrandtia
nassauensis DSM 44728]
Length = 186
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 29/102 (28%)
Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
+ + + V++ D + + L +
Sbjct: 59 DMRGFWPHQTDDKTGITAWFDQVNKYVVSATMTDPQWQKSTVLTGDPVEAVRNLKEQPGK 118
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330
++V G + H+ I + LVD L+ V G G P
Sbjct: 119 DIVVTGSITLCHTLIEAGLVDEYRLFTYPAVQGRGRRLFPDG 160
>gi|325954133|ref|YP_004237793.1| succinyl-CoA synthetase, subunit alpha [Weeksella virosa DSM
16922]
gi|323436751|gb|ADX67215.1| succinyl-CoA synthetase, alpha subunit [Weeksella virosa DSM
16922]
Length = 289
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 33 CLIV-KDGIVIGRGVTAYGGCPHAEVQ 58
++V KD +I +G T G HAE
Sbjct: 2 AVLVNKDSKIIVQGFTGKEGTFHAEQM 28
>gi|119962643|ref|YP_947330.1| guanine deaminase [Arthrobacter aurescens TC1]
gi|119949502|gb|ABM08413.1| guanine deaminase [Arthrobacter aurescens TC1]
Length = 160
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62
D +++ A++ + +V ++V + GV + HAEV A+
Sbjct: 10 DE-YLNLAIQLAVHNVSDGGG--PFGAVVVTADGTVHEGVNRVTRDHDPTAHAEVVAIRR 66
Query: 63 AGE-----EARGATAYVTLEPCSHY 82
A + G+ Y + EPC
Sbjct: 67 AAAASKRFDLTGSVLYASCEPCPLC 91
>gi|297561610|ref|YP_003680584.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296846058|gb|ADH68078.1| bifunctional deaminase-reductase domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 192
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G ++ + + + LVD + + ++ G G E + + V F
Sbjct: 126 GSLSLNRALMAAGLVDRVQVTVFPVISGRTGTDRIFEGAA-DFDLDLVTSRTFDG----- 179
Query: 354 YIGKNLCLQEL 364
+QEL
Sbjct: 180 ------RIQEL 184
>gi|313203115|ref|YP_004041772.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
gi|312442431|gb|ADQ78787.1| bifunctional deaminase-reductase domain protein [Paludibacter
propionicigenes WB4]
Length = 183
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
+LV G ++ +NS L+D + I+ G+G ++ ++
Sbjct: 114 KDILV-GSRSLIIQLLNSNLIDEFQICVHPIIEGKGLR--LFDQIKDRIMLKLIKTKTLD 170
Query: 348 S 348
S
Sbjct: 171 S 171
>gi|256390271|ref|YP_003111835.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256356497|gb|ACU69994.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 178
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + + + +VD + L + +V G G L +G + F +R
Sbjct: 119 RLNQALLAAGVVDELRLAIAPVVAGHGRR---LLDGLPQMRFETIRS 162
>gi|158317557|ref|YP_001510065.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec]
gi|158112962|gb|ABW15159.1| bifunctional deaminase-reductase domain protein [Frankia sp.
EAN1pec]
Length = 188
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 31/150 (20%), Gaps = 7/150 (4%)
Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256
+ + E L + +
Sbjct: 30 YWAASLERADALLLGRVTYEMMEAAWRLPATGTWPDWMADWMVPFARTIDGAKKYVVSGT 89
Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
+ +++L GRG L GG + + + L+D
Sbjct: 90 LDRVDWNAELVRGDLRNAVQQL-KQEPGRG----LFVGGVTLPLALADLGLIDEYEFVVQ 144
Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
I+ G G P+ V F
Sbjct: 145 PILAGHG--PTLFAGLSERLELKLVEHQEF 172
>gi|303322583|ref|XP_003071283.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110985|gb|EER29138.1| Cytidine and deoxycytidylate deaminase zinc-binding domain
containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320032991|gb|EFW14941.1| DRAP deaminase [Coccidioides posadasii str. Silveira]
Length = 232
Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 20/77 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK------------------DGIVIGRGV 46
S +++ L + + TN V +++ + ++ G
Sbjct: 13 STHLHYLTQCLALAAYSPPK-PTNFRVGAILLLRRYFPPTLGTTPDQQTTFEDKILSTGY 71
Query: 47 T-AYGGCPHAEVQALEE 62
T + G HAE L +
Sbjct: 72 TLEHRGNTHAEQCCLSK 88
>gi|86157437|ref|YP_464222.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773948|gb|ABC80785.1| bifunctional deaminase-reductase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 221
Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
L V G + + + LVD++ +++ +V+G G +G L F V
Sbjct: 128 LQVHGSFDLLQTLLRHDLVDALRIWQFPVVLGTG--KRLFGDGALPLAFRLVESQQTAPG 185
Query: 350 -VCLEYIGK 357
V Y +
Sbjct: 186 AVLHVYERE 194
>gi|108799736|ref|YP_639933.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
gi|119868846|ref|YP_938798.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. KMS]
gi|126435377|ref|YP_001071068.1| CMP/dCMP deaminase, zinc-binding [Mycobacterium sp. JLS]
gi|108770155|gb|ABG08877.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. MCS]
gi|119694935|gb|ABL92008.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. KMS]
gi|126235177|gb|ABN98577.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium sp. JLS]
Length = 159
Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 21/101 (20%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIV-------IGRGVTAYGGC 52
M +S D + + +R + L+V G V + G
Sbjct: 1 MAISDSDLEHLRRCVDLAREALDAGDE--PFGSLLVDSAGQVRFADHNRVSGGDH----T 54
Query: 53 PHAEVQALEE-AGEEAR-----GATAYVTLEPCSHYGRSPP 87
H E A+ A E AT Y + E C +
Sbjct: 55 RHPEF-AIARWAAEHLDPSERAAATVYTSGEHCPMCAAAHA 94
>gi|325920349|ref|ZP_08182285.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
gi|325549169|gb|EGD20087.1| cytosine/adenosine deaminase [Xanthomonas gardneri ATCC 19865]
Length = 186
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC----PHAEVQ 58
S D + A+ SR +V S P ++ D +I V HAE
Sbjct: 26 SDEDKV--ALAIELSRMNVQERSGGP-FGAVVFGPDNRIIAAAVNRVVPQTTSLAHAENM 82
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
A A + + L P + + PC Q
Sbjct: 83 AYMLAQQRLQTPRLNDVLSPVTLATSAQPCCQC 115
>gi|284033680|ref|YP_003383611.1| bifunctional deaminase-reductase domain-containing protein
[Kribbella flavida DSM 17836]
gi|283812973|gb|ADB34812.1| bifunctional deaminase-reductase domain protein [Kribbella flavida
DSM 17836]
Length = 183
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346
GA +A + + +D ++ + + +++G G G V
Sbjct: 118 GADLARQCLEAGRLDEVLTFVAPVLLG-DGTRLFHHPGGRTVQLERVHHSAV 168
>gi|255008263|ref|ZP_05280389.1| hypothetical protein Bfra3_03926 [Bacteroides fragilis 3_1_12]
gi|294646135|ref|ZP_06723795.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292638513|gb|EFF56871.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 137
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 278 LLTILVGRG--VTSLL-VEGGAA-VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
+L G + LL V G A+ + ++D IILY + G G +
Sbjct: 52 VLQEWREEGGSICHLLEVTAGNTEYANGLLRMNVIDEIILYVVPTIDGNGAH--FFKSAL 109
Query: 334 LEKNFMCVRRDYF-GSDVCLEYIGK 357
++ + + + L Y +
Sbjct: 110 PMNDWRLMENKTYRDGVIRLTYHKE 134
>gi|119190075|ref|XP_001245644.1| hypothetical protein CIMG_05085 [Coccidioides immitis RS]
Length = 232
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 20/77 (25%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK------------------DGIVIGRGV 46
S +++ L + + TN V +++ + ++ G
Sbjct: 13 STHLHYLTQCLALAAYSPPK-PTNFRVGAILLLRRYFPPTLGTTPDQQTTFEDKILSTGY 71
Query: 47 T-AYGGCPHAEVQALEE 62
T + G HAE L +
Sbjct: 72 TLEHRGNTHAEQCCLSK 88
>gi|21225922|ref|NP_631701.1| secreted protein [Streptomyces coelicolor A3(2)]
gi|11323247|emb|CAC16994.1| putative secreted protein [Streptomyces coelicolor A3(2)]
Length = 212
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
V G +A + + LVD L ++IG G +G + V
Sbjct: 140 VVGSGDLAQTLMRHGLVDEYRLTIHSVIIGTG--KRLFADGAIPTALEPVSV 189
>gi|329927725|ref|ZP_08281837.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
gi|328938303|gb|EGG34696.1| riboflavin biosynthesis protein RibD C-terminal domain protein
[Paenibacillus sp. HGF5]
Length = 198
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 3/113 (2%)
Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ + N V + ++ + K+ I +G L
Sbjct: 67 IWAPYWPQHADVWPRANQANKYVVSNTMTSGEWQPSVFLSGNIVGKITQIKQQQG-PDLH 125
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
V G + + I LVD L I +G G G F
Sbjct: 126 VWGSGDLVQTLIKHDLVDVFWLMIYPITLGSG--KRLFAGGTTPAAFKVTESK 176
>gi|297274448|ref|XP_002800804.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
1-like [Macaca mulatta]
Length = 467
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|290956455|ref|YP_003487637.1| hypothetical protein SCAB_19511 [Streptomyces scabiei 87.22]
gi|260645981|emb|CBG69072.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 191
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 23/85 (27%)
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ ++ L G +LV +V + + LVD + L + G+G
Sbjct: 98 PWDHARVVNAPAADVVAELKAVGEGDILVNSSPSVIKPLLAADLVDRLYLMIFPEIAGDG 157
Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGS 348
+ G
Sbjct: 158 QRLFDDGLPSTKWKLSHQETGELGE 182
>gi|257068139|ref|YP_003154394.1| dihydrofolate reductase [Brachybacterium faecium DSM 4810]
gi|256558957|gb|ACU84804.1| dihydrofolate reductase [Brachybacterium faecium DSM 4810]
Length = 193
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
A +A + LVD + + + +++G+G + G V + G
Sbjct: 132 ADIARQALEHDLVDELQCFSAPVMLGDGVRVLDVPGG------RLVEWELVGP 178
>gi|189053523|dbj|BAG35689.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|118592805|ref|ZP_01550194.1| CMP/dCMP deaminase, zinc-binding protein [Stappia aggregata IAM
12614]
gi|118434575|gb|EAV41227.1| CMP/dCMP deaminase, zinc-binding protein [Stappia aggregata IAM
12614]
Length = 158
Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 27/115 (23%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVT---------------AYGGC 52
RF+ ++W V +IV G I G G
Sbjct: 11 RFLGLCDHIAQWSEDRDFK---VGAVIVGPGQEIRATGYNGLPRGVSGTDETRLDRPSGE 67
Query: 53 P-----HAEVQALEEAGEEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
HAE A+ A T YV PC+ R+ + +
Sbjct: 68 KFFWVEHAERNAIYNAARAGAALAGCTLYVNRFPCADCARAIIQSGLSCVECPPK 122
>gi|301500692|ref|NP_001180407.1| cytidine and dCMP deaminase domain-containing protein 1 isoform 2
[Homo sapiens]
gi|332841300|ref|XP_003314191.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein 1
[Pan troglodytes]
Length = 491
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|169839917|ref|ZP_02873105.1| hypothetical protein cdivTM_22782 [candidate division TM7
single-cell isolate TM7a]
Length = 31
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 25 TSTNPSVACLIVKDGIVI 42
+ NP V ++V+DG ++
Sbjct: 4 VNPNPMVGAVVVQDGKLL 21
>gi|13569864|ref|NP_112173.1| cytidine and dCMP deaminase domain-containing protein 1 isoform 1
[Homo sapiens]
gi|55640261|ref|XP_522754.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein 1
isoform 3 [Pan troglodytes]
gi|74724888|sp|Q9BWV3|CDAC1_HUMAN RecName: Full=Cytidine and dCMP deaminase domain-containing protein
1; AltName: Full=Testis development protein NYD-SP15
gi|13311007|gb|AAK16745.1| protein kinase NYD-SP15 [Homo sapiens]
gi|115529089|gb|AAI25203.1| Cytidine and dCMP deaminase domain containing 1 [Homo sapiens]
gi|119629222|gb|EAX08817.1| cytidine and dCMP deaminase domain containing 1, isoform CRA_c
[Homo sapiens]
gi|122889103|emb|CAI10890.2| cytidine and dCMP deaminase domain containing 1 [Homo sapiens]
Length = 514
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|331694406|ref|YP_004330645.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326949095|gb|AEA22792.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 200
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
V GGAA + VD + + + +V+G G E + + +
Sbjct: 136 VMGGAATIRQALAGGHVDELGISVAPLVLGGGTR--LFEGFTGDLDLERIDVR 186
>gi|328886795|emb|CCA60034.1| cytidine or deoxycytidine deaminase [Streptomyces venezuelae ATCC
10712]
Length = 145
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT----AYGGCPHAEV 57
++ D + A+ + V T + L+ DG V+ H E+
Sbjct: 2 ITPADETLLRRAVGIAARAV--TLGDAPYGSLLAGPDGTVLAEAHNTVRRDNDITAHPEL 59
Query: 58 -----QALEEAGEEARGATAYVTLEPCSHY 82
A E A E A G T Y + +PC
Sbjct: 60 KLARWAARELAPETAAGTTLYTSCQPCGMC 89
>gi|281349734|gb|EFB25318.1| hypothetical protein PANDA_007749 [Ailuropoda melanoleuca]
Length = 471
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNTKIV--GLHCSSEDLHAGKIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|297566263|ref|YP_003685235.1| phenylacetic acid degradation protein paaN [Meiothermus silvanus
DSM 9946]
gi|296850712|gb|ADH63727.1| phenylacetic acid degradation protein paaN [Meiothermus silvanus
DSM 9946]
Length = 679
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 20/143 (13%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--HAEVQ 58
MP + D A+ ++ G + ++ D T + G H V
Sbjct: 407 MPYTDLDE-----AIALAKRGRGSLA-----GSIVTYDR---AEARTLFFGLAAHHGRVL 453
Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118
L E+A+ +T + + P +G G+R + + V+ L W
Sbjct: 454 ILNR--EDAKESTGHGSPLPQLIHGGPGRAGAGEEMGGVRGIKHYMQRSAVQADPTTLMW 511
Query: 119 ---LSQKGIIVDRMMESEGKIFL 138
+G V + +
Sbjct: 512 LSGEYVRGAQVSEDNVHPFRKYF 534
>gi|328782115|ref|XP_392980.4| PREDICTED: zinc finger protein 268-like [Apis mellifera]
Length = 1082
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 19/244 (7%), Positives = 49/244 (20%), Gaps = 4/244 (1%)
Query: 46 VTAYGGCPHAEVQALEEAGEEARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ P E A ++ T + E ++ R +
Sbjct: 508 FHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTF 567
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
+ V + + I E + + T + K ++
Sbjct: 568 TRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKE 627
Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
++ + R + + T C ++ +
Sbjct: 628 HLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLN 687
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ + + +V FR + + L +
Sbjct: 688 HVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQ 747
Query: 282 LVGR 285
G
Sbjct: 748 HTGE 751
>gi|301767474|ref|XP_002919164.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
1-like [Ailuropoda melanoleuca]
Length = 514
Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNTKIV--GLHCSSEDLHAGKIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|328884172|emb|CCA57411.1| hypothetical protein SVEN_4125 [Streptomyces venezuelae ATCC 10712]
Length = 190
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 293 EGGA-------AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
EGG ++ + ++ L+D L +++G G + V +
Sbjct: 118 EGGPIIMHGSASLGRALSDAGLIDRYHLLVFPLLLGA-GKRLFSGTDKDTQKLKLVEHET 176
Query: 346 FGSDV 350
+ + +
Sbjct: 177 YANGI 181
>gi|197098636|ref|NP_001125631.1| cytidine and dCMP deaminase domain-containing protein 1 [Pongo
abelii]
gi|75055039|sp|Q5RAX4|CDAC1_PONAB RecName: Full=Cytidine and dCMP deaminase domain-containing protein
1
gi|55728693|emb|CAH91086.1| hypothetical protein [Pongo abelii]
Length = 515
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|296189270|ref|XP_002742710.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
1-like [Callithrix jacchus]
Length = 515
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|78778494|ref|YP_396606.1| ribD/ribG-like [Prochlorococcus marinus str. MIT 9312]
gi|78711993|gb|ABB49170.1| ribD/ribG-like protein [Prochlorococcus marinus str. MIT 9312]
Length = 216
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 48/162 (29%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + IA S D I G + K ++ + DA + G+GT+LA
Sbjct: 1 MSIPRVIIVIASSLDGRIAFPEGGESHLGSEEDKKMLNQNLSMVDATIFGLGTLLAHQST 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
+ + S K I K +
Sbjct: 61 YLIKNLNDNNEVKISKSQPISIVASNSKKFNSNWKYFRQPIRRWLISSSKVDNLSKNDFE 120
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
K L L +G+ L + GGA + +SFI L+
Sbjct: 121 KQLFFEHSWGKTLISLKKQGINDLALLGGAKLINSFIKEDLI 162
>gi|332241927|ref|XP_003270136.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
1-like [Nomascus leucogenys]
Length = 515
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|291408950|ref|XP_002720791.1| PREDICTED: cytidine and dCMP deaminase domain containing 1
[Oryctolagus cuniculus]
Length = 514
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 137
>gi|82539791|ref|XP_724257.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23478844|gb|EAA15822.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 197
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1 MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVT----AYGGCP 53
M S D F+ AL + + + + + CL++ + +I + GC
Sbjct: 2 MVELSNDEAISFLKQALHEAEKSLKVETKEMPIFCLLINEKKEIISSSYNCTNESKNGCR 61
Query: 54 HAEVQALEE 62
H E+ A+++
Sbjct: 62 HCEIIAIDK 70
>gi|126696279|ref|YP_001091165.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9301]
gi|126543322|gb|ABO17564.1| putative cytidine/deoxycytidylate deaminase [Prochlorococcus
marinus str. MIT 9301]
Length = 171
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 39 GIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTLEPCSHY 82
G IGRGV HAE+ AL +A LEPC+
Sbjct: 53 GRCIGRGVNRRNINNDPLGHAEIMALRQASLIKNDWRFNECIIITNLEPCTMC 105
>gi|75076287|sp|Q4R683|CDAC1_MACFA RecName: Full=Cytidine and dCMP deaminase domain-containing protein
1
gi|67970095|dbj|BAE01392.1| unnamed protein product [Macaca fascicularis]
Length = 515
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 138
>gi|170745488|ref|YP_001766945.1| deaminase-reductase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170659089|gb|ACB28143.1| bifunctional deaminase-reductase domain protein [Methylobacterium
radiotolerans JCM 2831]
Length = 221
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
LL++G + + + + + L+D ++L +++G G ++ + + V + +
Sbjct: 124 DLLIQGSSMLYPALLPAGLIDRMVLITFPVMLG-RGKRWYADDPSAARTWTLVEQTH 179
>gi|126728506|ref|ZP_01744322.1| hypothetical protein SSE37_20987 [Sagittula stellata E-37]
gi|126711471|gb|EBA10521.1| hypothetical protein SSE37_20987 [Sagittula stellata E-37]
Length = 156
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 37 KDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHY 82
+ ++ RG + HAE+ A+ A + G T TL+PC
Sbjct: 37 RGDTLLARGANEVHLNHDPSRHAEIVAISAACRALGTADLSGCTLLTTLQPCEMC 91
>gi|167839756|ref|ZP_02466440.1| riboflavin biosynthesis protein [Burkholderia thailandensis MSMB43]
Length = 158
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
L +GV L V+ A+ + +S L D ++LY
Sbjct: 60 PDAFARLAAQGVNELFVDADPALCDALFDSDLADELLLYVHP 101
>gi|326914180|ref|XP_003203405.1| PREDICTED: cytidine and dCMP deaminase domain-containing protein
1-like [Meleagris gallopavo]
Length = 427
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ +I G+ HA AL + G + Y + +PCS
Sbjct: 40 GLVVVKNMTII--GLHCSSTDLHAGQIALIKHGSRLKNCDLYFSRKPCSTC 88
>gi|282863790|ref|ZP_06272848.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
gi|282561491|gb|EFB67035.1| CMP/dCMP deaminase zinc-binding [Streptomyces sp. ACTE]
Length = 142
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV----TAYGGCPHA 55
M + D + A+ + +P L+ DG V+ T H
Sbjct: 1 MT-TPDDHTLLRRAIALAAEARE--GGDPPFGSLLSGPDGTVLAEERNTTLTDGDITAHP 57
Query: 56 EVQALEEAGEEARGA-----TAYVTLEPCSHY 82
E++ A E A T Y + +PC
Sbjct: 58 ELKLARWAARELDAATAAETTMYTSCQPCEMC 89
>gi|91781303|ref|YP_556510.1| putative deaminase-reductase [Burkholderia xenovorans LB400]
gi|91693963|gb|ABE37160.1| putative deaminase-reductase [Burkholderia xenovorans LB400]
Length = 213
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 1/98 (1%)
Query: 227 HFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285
+ D P + L
Sbjct: 84 RGEWPDDQWKGWWGDNPPYHAPTFILTHHARPSIEMLGGTTFHFVTGGIEDALEKARKAA 143
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
G + + GG ++ + VD I L + + +G+G
Sbjct: 144 GGKDVKIGGGVKTVKQYVQAGYVDEIHLAFAPVALGQG 181
>gi|438196|emb|CAA79799.1| hypothetical DNA-binding protein [Amycolatopsis lactamdurans]
Length = 214
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 18/148 (12%), Positives = 35/148 (23%)
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ + G L D N E +
Sbjct: 36 EIFAWAGATASWPNRTEPGGTRGLDDHLVRDFHHNIGAEIMGRNKFGPQRGPWENHDWLG 95
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297
P +F + + L + + GGA
Sbjct: 96 WWGDEPPFHTPVFVLTHHERPSFTLSDTTFHFVGGDLAAVLERAKEAAQGKDVRLGGGAT 155
Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325
+F+++ LVD++ + +Q +G G
Sbjct: 156 TIRAFLDADLVDTLHVAVAQPELGAGSR 183
>gi|118468615|ref|YP_887753.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|118169902|gb|ABK70798.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
Length = 215
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282
+ P +F + + D L
Sbjct: 81 FSPHRGPWADHEWRGWWGDEPPFHTPVFVLTHHPRPSFTLSDTTFHFIDADPHTALRLAR 140
Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ-IVIGEGGI 325
+ + GGA+ F+++ L+D++ + S + IG G
Sbjct: 141 KAAQGKDVRLGGGASTVREFLDAGLIDTLHVAVSPAVTIGSGSR 184
>gi|84495561|ref|ZP_00994680.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
gi|84385054|gb|EAQ00934.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
Length = 213
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 2/120 (1%)
Query: 225 DPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
D P + V + D + L
Sbjct: 79 PQTGPWPEDGWRGWWGDEPPFMTPVFVLTHFEREPIEFDNGTVFHFIDAGPAEALEVARE 138
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
G + + GG F+ + LVD++ + +V+G G ++ F
Sbjct: 139 AAGGLDVRIGGGPTSVRQFLEADLVDTMHVVNVPVVLGSGKALW-QGLAGIQDRFDIDSI 197
>gi|156549817|ref|XP_001606584.1| PREDICTED: similar to CROL ALPHA [Nasonia vitripennis]
Length = 1020
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 19/244 (7%), Positives = 50/244 (20%), Gaps = 4/244 (1%)
Query: 46 VTAYGGCPHAEVQALEEAGEEARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ P E A ++ T + E ++ R +
Sbjct: 497 FHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTF 556
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
+ V + + I E + + T + + K ++
Sbjct: 557 TRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKE 616
Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
++ + R + + T C ++ +
Sbjct: 617 HLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLN 676
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ + + +V FR + + L +
Sbjct: 677 HVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQ 736
Query: 282 LVGR 285
G
Sbjct: 737 HTGE 740
>gi|51244557|ref|YP_064441.1| dihydrofolate reductase [Desulfotalea psychrophila LSv54]
gi|50875594|emb|CAG35434.1| similar to dihydrofolate reductase [Desulfotalea psychrophila
LSv54]
Length = 179
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334
+K+L+ L G + ++GG + SF+ L+ I + R +++GEG E
Sbjct: 97 MKELVASLEAEGCRRIYIDGG-KIIRSFLRKNLLTDITITRIPLLLGEGIR--LFGETGY 153
Query: 335 EKNFMCVRRDYF 346
+ ++ +
Sbjct: 154 DIKLRHIKTKSY 165
>gi|302340024|ref|YP_003805230.1| hypothetical protein Spirs_3548 [Spirochaeta smaragdinae DSM 11293]
gi|301637209|gb|ADK82636.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 311
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+++ +L G G+ LVE S + S +D + L S I +G +
Sbjct: 226 EVVRLLAGAGIRRALVES-PTFLASLLASGDLDELFLNTSGIFVGGKAL 273
>gi|114649630|ref|XP_001153214.1| PREDICTED: hypothetical protein LOC467357 isoform 2 [Pan
troglodytes]
Length = 469
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 44 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 92
>gi|307331991|ref|ZP_07611084.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306882380|gb|EFN13473.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 214
Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 1/111 (0%)
Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293
+ V + + D L + +
Sbjct: 89 WRGWWGDEPPFRTPVVVLTHHRRDPIHFDNGTSFHFLDATPEDALAYAQDLADGRDVRIG 148
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
GG + F+ + L+D + L I +G G+ + ++ F
Sbjct: 149 GGPSTVRQFLTADLIDFMHLVTVPITLGA-GVSLWDGQAEVQDRFTIESAT 198
>gi|300113646|ref|YP_003760221.1| bifunctional deaminase-reductase domain-containing protein
[Nitrosococcus watsonii C-113]
gi|299539583|gb|ADJ27900.1| bifunctional deaminase-reductase domain protein [Nitrosococcus
watsonii C-113]
Length = 291
Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
+KL+ L G T++ G V + + +++++ + L + ++G +E L+
Sbjct: 193 QKLIAALGQEGFTTIYSVAGPGVLKTLLAAQMLNRLYLTHALRILGGEPFDILVEGEQLD 252
Query: 336 K--NFMCVRRDY 345
+F Y
Sbjct: 253 PPADFKLHSLYY 264
>gi|87125219|ref|ZP_01081065.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9917]
gi|86166988|gb|EAQ68249.1| putative riboflavin-specific deaminase [Synechococcus sp. RS9917]
Length = 222
Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYF-GSDVC 351
+ VD + L + ++G P + L + + + G ++
Sbjct: 152 CAGLLQDDAVDGLQLTLTPRLLGGEHCWLPADTLGLPADLGSSAAWGLEAVERLEGDELM 211
Query: 352 LEYIGKN 358
L Y +
Sbjct: 212 LRYRRQR 218
>gi|160889367|ref|ZP_02070370.1| hypothetical protein BACUNI_01790 [Bacteroides uniformis ATCC 8492]
gi|260641950|ref|ZP_05414079.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
gi|298376875|ref|ZP_06986830.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|301309543|ref|ZP_07215485.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|313145983|ref|ZP_07808176.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|332877337|ref|ZP_08445085.1| hypothetical protein HMPREF9074_00815 [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|156861374|gb|EDO54805.1| hypothetical protein BACUNI_01790 [Bacteroides uniformis ATCC 8492]
gi|260624086|gb|EEX46957.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
gi|298266753|gb|EFI08411.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
gi|300832632|gb|EFK63260.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|313134750|gb|EFR52110.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|332684720|gb|EGJ57569.1| hypothetical protein HMPREF9074_00815 [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 181
Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 287 VTSLL-VEGGAA-VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
+ LL V G A+ + ++D IILY + G G + ++ +
Sbjct: 107 ICHLLEVTAGNTEYANGLLRMNVIDEIILYVVPTIDGNGAH--FFKSALPMNDWRLMENK 164
Query: 345 YF-GSDVCLEYIGK 357
+ + L Y +
Sbjct: 165 TYRDGVIRLTYHKE 178
>gi|120402271|ref|YP_952100.1| DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
gi|119955089|gb|ABM12094.1| DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
Length = 215
Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 35/161 (21%)
Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
+ + G L D N E
Sbjct: 37 MFAWCGATASWPNRTEPGGTRGLDDYFTRDFSHNIGAEIMGRNKFSPHRGPWRDHEWQGW 96
Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298
P +F + + + + + GGAA
Sbjct: 97 WGDEPPFHTPVFVMTHHERPSFTLSDTTFHFITADPVTVATRAKEAAAGKDVRLGGGAAT 156
Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339
F+++ LVD++ + S V G L+ F
Sbjct: 157 IRQFLDADLVDTLHVAVSPDVEIGSGSRLWKSPDELDDRFH 197
>gi|290963280|ref|YP_003494462.1| hypothetical protein SCAB_90051 [Streptomyces scabiei 87.22]
gi|260652806|emb|CBG75939.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 201
Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCL 352
G ++ S + + LVD + ++ G G + +GY + + F G +
Sbjct: 127 GSLSLCRSLMQAGLVDRFRVVMFPVITGATGEER-IYDGYPDVALEMIDHRTFDGRTQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYKPR 190
>gi|257388119|ref|YP_003177892.1| CMP/dCMP deaminase zinc-binding [Halomicrobium mukohataei DSM
12286]
gi|257170426|gb|ACV48185.1| CMP/dCMP deaminase zinc-binding [Halomicrobium mukohataei DSM
12286]
Length = 154
Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV-QAL 60
R + +A+ +R + ++V+D I VT H E+ AL
Sbjct: 10 DHERHVQSAIDLARAAADR--GDRPFGSVLVRDDEQIAAASNRVVTEDDLRRHPELDLAL 67
Query: 61 EE----AGEEARGATAYVTLEPCSHY 82
EE Y + EPC
Sbjct: 68 AAERSYTPEERARTVMYTSTEPCPMC 93
>gi|119629220|gb|EAX08815.1| cytidine and dCMP deaminase domain containing 1, isoform CRA_a
[Homo sapiens]
Length = 492
Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 44 GLVVVKNMKIV--GLHCSSEDLHAGQIALIKHGSRLKNCDLYFSRKPCSAC 92
>gi|260906090|ref|ZP_05914412.1| dihydrofolate reductase [Brevibacterium linens BL2]
Length = 187
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ L+D + ++ + I +G G G + + D D
Sbjct: 129 QALEIDLIDEMQVFVAPIFLG-DGTRIFDVPGGRRVYWELIAEDESNKDAWFRRFRPK 185
>gi|302551577|ref|ZP_07303919.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces viridochromogenes DSM 40736]
gi|302469195|gb|EFL32288.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces viridochromogenes DSM 40736]
Length = 190
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V G A++ ++ L+D L +++G G + V + + +
Sbjct: 122 IIVHGSASLNQGLSDAGLIDRYHLLVFPLLLGA-GKRLFSTTDKDTQKLRLVEHEAYAN 179
>gi|155371563|ref|YP_001427097.1| hypothetical protein ATCV1_Z616L [Acanthocystis turfacea Chlorella
virus 1]
gi|155124883|gb|ABT16750.1| hypothetical protein ATCV1_Z616L [Acanthocystis turfacea Chlorella
virus 1]
Length = 149
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 30/126 (23%)
Query: 27 TNPSVAC-LIVKDGIVIGRGVTAYGGCP--------------------HAEVQALEEA-- 63
N VA +I + ++ G G P HAE A+ A
Sbjct: 22 PNTKVAAMVIDANHNILSVGY---NGLPRGFEETQERWSKPEKYQYVVHAEANAICTAAR 78
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
G + G + TL PC + + ++ G + +
Sbjct: 79 NGAKLDGGSIVSTLFPCDQC---ARLIIQAGIKKVVTARPEENSSWLQSFGYSKEMFDEC 135
Query: 123 GIIVDR 128
G+ ++
Sbjct: 136 GVEIEY 141
>gi|194221887|ref|XP_001490247.2| PREDICTED: cytidine and dCMP deaminase domain containing 1 [Equus
caballus]
Length = 514
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + Y + +PCS
Sbjct: 89 GLVVVKNTKIV--GLHCSSEDLHAGKIALVKHGSRLKNCDLYFSRKPCSAC 137
>gi|300713101|ref|YP_003738913.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
[Halalkalicoccus jeotgali B3]
gi|299126785|gb|ADJ17122.1| Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD)
[Halalkalicoccus jeotgali B3]
Length = 191
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQ-- 58
+ D M ++ + ++V+D +I R +T H E+
Sbjct: 47 NHDEH-MRETFELAQEA--TARGDKPFGSVLVRDDTIIMSDSNREITEDDIRRHPELHLA 103
Query: 59 --ALEEAGEEARGA-TAYVTLEPCSHY 82
A E + R A Y + PC
Sbjct: 104 YRACREYDADERAAMVMYTSTGPCPMC 130
>gi|258621774|ref|ZP_05716805.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258626283|ref|ZP_05721130.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258581335|gb|EEW06237.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258586005|gb|EEW10723.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 110
Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 50 GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAEV+A+ +A + RG T + EPC+
Sbjct: 5 DPTAHAEVEAIRDACKNTKKPHLRGLTLLASGEPCAMC 42
>gi|284504113|ref|YP_003406828.1| nucleoside deaminase [Marseillevirus]
gi|282935551|gb|ADB03866.1| nucleoside deaminase [Marseillevirus]
Length = 81
Score = 37.2 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GG-------CPHAEVQALEE 62
A++ + + C++V G + G G HAE+ AL
Sbjct: 14 LAIQQAEKSEMSQK----IGCIVVMGGRPVSFGYNRDMDGFVLGTHCRMHAEMCALRR 67
>gi|325964222|ref|YP_004242128.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470309|gb|ADX73994.1| dihydrofolate reductase [Arthrobacter phenanthrenivorans Sphe3]
Length = 185
Score = 37.2 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
VD ++ S + +G G P L + FG+ V L Y
Sbjct: 137 VDECCIFLSPVAVGGGLRFLP---EGLNLQLDLLDERRFGNGVVYLRYRV 183
>gi|96771862|emb|CAI78444.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC
23877]
gi|117164406|emb|CAJ87951.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC
23877]
Length = 201
Score = 37.2 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV-CL 352
G ++ S + + LVD + ++ G G + +GY + F + +
Sbjct: 127 GSLSLCRSLLRAGLVDRFRVVMFPVITGATGEER-IYDGYPDVALEMNEHRTFDGRIQLV 185
Query: 353 EYIGK 357
EY +
Sbjct: 186 EYKPR 190
>gi|281210912|gb|EFA85078.1| cytidine deaminase-like protein [Polysphondylium pallidum PN500]
Length = 499
Score = 37.2 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPH 54
FM A+ + L NP V ++V + G G G H
Sbjct: 311 FMKKAIEQANIGKSL-GFNP-VGAVLVDPETNTIHGAGFDQTPG-NH 354
>gi|298245066|ref|ZP_06968872.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
gi|297552547|gb|EFH86412.1| bifunctional deaminase-reductase domain protein [Ktedonobacter
racemifer DSM 44963]
Length = 201
Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273
+ + + L K V V + +
Sbjct: 48 MDKQMNLPFDLLLGRKTFEIWAPFWPQHADGWPGVMSATKYVASNSMTSSEWQPSVFLGG 107
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333
D+ + ++ L + L V G A + + + LVD+ L + +G G +G
Sbjct: 108 DIAEKVSKLKHQPGPDLHVYGSANLLQTLMKHDLVDAFWLKIFPLTLGSG--KRLFTDGT 165
Query: 334 LEKNFMCVRRD 344
+ F
Sbjct: 166 IPAAFKVTESQ 176
>gi|145596747|ref|YP_001161044.1| deaminase-reductase domain-containing protein [Salinispora tropica
CNB-440]
gi|145306084|gb|ABP56666.1| bifunctional deaminase-reductase domain protein [Salinispora
tropica CNB-440]
Length = 180
Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 32/96 (33%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + D + L V K + + + + V G
Sbjct: 54 GRRTYDQGASQDGFLDNPFPVEHFVVSHSTPEQVAKGDTVFHFVPDVAEAVRRAQVAAGE 113
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + GGA +A + + LVD I L +VI +G
Sbjct: 114 REVTIGGGAQIAQQCLAAGLVDEIRLAVRPMVINDG 149
>gi|50730877|ref|XP_417059.1| PREDICTED: similar to protein kinase NYD-SP15 [Gallus gallus]
Length = 495
Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ +I G+ HA AL + G + + Y + +PCS
Sbjct: 67 GLVVVKNMTII--GLHCSSTDLHAGQIALIKHGSKLKNCDLYFSRKPCSTC 115
>gi|53803359|ref|YP_114888.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Methylococcus
capsulatus str. Bath]
gi|53757120|gb|AAU91411.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Methylococcus
capsulatus str. Bath]
Length = 355
Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
+L ++G GV +LLVEG A ++ F++ L D ++
Sbjct: 263 AVLATILGLGVRTLLVEGDAGLSGRFLDQALADYCVITVVP 303
>gi|46109124|ref|XP_381620.1| hypothetical protein FG01444.1 [Gibberella zeae PH-1]
Length = 428
Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 17/74 (22%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDG---IVIGRG----VTAYGG--------CP 53
+M+ A R + T ++ +IV +DG ++G G
Sbjct: 223 WMALAHRVALQAK-ETGIGEAIGAVIVQRDGGKVELVGVAGDARWHQECGPLGGTSNPMT 281
Query: 54 HAEVQALEEAGEEA 67
H V+A+ ++
Sbjct: 282 HCVVRAISMVAQKL 295
>gi|215918961|ref|NP_819453.2| guanine deaminase [Coxiella burnetii RSA 493]
gi|206583846|gb|AAO89967.2| guanine deaminase [Coxiella burnetii RSA 493]
Length = 168
Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 35/87 (40%)
Query: 29 PSVACLIV----KDGIVI--------GRGVTAYGGCPHAEVQALEEAGEEAR-------- 68
P +IV K G V HAE+ + +A E
Sbjct: 13 PPFGAVIVQIDDKSGRVFRYWVDHNHSVDWHDP--TAHAEMSVIRKAARELNVTDLGHIR 70
Query: 69 -------------GATAYVTLEPCSHY 82
Y + EPC
Sbjct: 71 KEDSKLSQPSEWSHCVIYSSAEPCPMC 97
>gi|302530562|ref|ZP_07282904.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302439457|gb|EFL11273.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 195
Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-L 352
GG A HS I +VD L+ V G+G P + + V+ F S + L
Sbjct: 135 GGTAFLHSLIKLDVVDEYRLWVLPAVTGKGAPLFP--QLDEARRLRLVKSTAFPSGILEL 192
Query: 353 EY 354
Y
Sbjct: 193 RY 194
>gi|293605996|ref|ZP_06688362.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
43553]
gi|292815611|gb|EFF74726.1| cytidine/deoxycytidylate deaminase [Achromobacter piechaudii ATCC
43553]
Length = 56
Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPH 54
+ D + ++ + +R + S + ++V +G V+ G H
Sbjct: 2 IDEHDKQHLARCVALARQALE--SGDQPFGSVLVSANGEVLFEDHNHVSGGDH 52
>gi|256394700|ref|YP_003116264.1| bifunctional deaminase-reductase domain-containing protein
[Catenulispora acidiphila DSM 44928]
gi|256360926|gb|ACU74423.1| bifunctional deaminase-reductase domain protein [Catenulispora
acidiphila DSM 44928]
Length = 188
Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348
++V GG + S ++ +VD + L + GEG + + S
Sbjct: 120 YIVVWGGVGLFRSLLDLDVVDELWLSVFPYIAGEGTR--IFDGVPSSYALELISSTASPS 177
Query: 349 DVC-LEYIGKN 358
+ L Y +
Sbjct: 178 GIMELRYRRRR 188
>gi|332030777|gb|EGI70453.1| Zinc finger protein 84 [Acromyrmex echinatior]
Length = 1019
Score = 37.2 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 19/244 (7%), Positives = 48/244 (19%), Gaps = 4/244 (1%)
Query: 46 VTAYGGCPHAEVQALEEAGEEARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVV 101
+ P E A ++ T + E ++ R +
Sbjct: 519 FHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTF 578
Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
+ V + + I E + + T + K ++
Sbjct: 579 TRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKE 638
Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221
++ + R + + T C ++ +
Sbjct: 639 HLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLN 698
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281
+ + + +V FR + L +
Sbjct: 699 HVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQ 758
Query: 282 LVGR 285
G
Sbjct: 759 HTGE 762
>gi|262200314|ref|YP_003271522.1| bifunctional deaminase-reductase domain-containing protein
[Gordonia bronchialis DSM 43247]
gi|262083661|gb|ACY19629.1| bifunctional deaminase-reductase domain protein [Gordonia
bronchialis DSM 43247]
Length = 188
Score = 37.2 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
++V G +A + + VD + L ++IG G +P
Sbjct: 122 VIVWGSLTLADGLLRAGAVDELRLRIVPVLIGAGRTFTP 160
>gi|167616050|ref|ZP_02384685.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
Bt4]
Length = 156
Score = 37.2 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335
L +GV L VE A+ + + L D ++LY +P+ +L
Sbjct: 57 PDAFARLAKQGVNELFVEADLALCDALFGADLADELLLYAHP-----ASRDAPVSASWLA 111
Query: 336 KNFMCVRRDY 345
V R +
Sbjct: 112 AAIDDVARRW 121
>gi|316977917|gb|EFV60957.1| 7 transmembrane receptor [Trichinella spiralis]
Length = 1203
Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 30/277 (10%), Positives = 74/277 (26%), Gaps = 12/277 (4%)
Query: 49 YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
G P A A++E YV + + + +
Sbjct: 472 QNGSPPA--DAIQEVIIR-----RYVDYSVFYIMCSLVAICIMLAIALLTVNIYFRNHKF 524
Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT---LKIAVSQDNMIG 165
+++S + L G I+ I + + L +
Sbjct: 525 IKMSSPNVNNLIILGSIMTYCSVILLGIDTNMVSELDYSRMCTAKVWILCFGFTLAFGSM 584
Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
A V ++ ++VG+ ++ T + + + ++ +
Sbjct: 585 FAKTWRVHSIFNDIHLHKKAIKDYKLFLIVGVLLLIDVLILSTWLIIDPMQMAVKQLPTE 644
Query: 226 PHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT-ILV 283
+ ++ K ++ + ++ L +
Sbjct: 645 KDERSNMLIKPTIEYCKTDYTVVFQALLYGYKGIFLVLGCFLAWETRNVNVPALNDSKYI 704
Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
G V ++++ G VA SFI ++ + S +I
Sbjct: 705 GMSVYNVVLVCGVGVAISFILQDQINECYIIISMFII 741
>gi|168184087|ref|ZP_02618751.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Bf]
gi|237794157|ref|YP_002861709.1| riboflavin biosynthesis protein RibD C- domain-containing protein
[Clostridium botulinum Ba4 str. 657]
gi|182672861|gb|EDT84822.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Bf]
gi|229263075|gb|ACQ54108.1| riboflavin biosynthesis protein RibD C- domain protein [Clostridium
botulinum Ba4 str. 657]
Length = 181
Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 43/103 (41%)
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
+ K + +N +A + + +N + ++ D+ K++ + + + GG
Sbjct: 55 MGKNCYDQNMHNDFKNKKVYVATSQKIQNQDNLHFISGDICKIIQEEKEKEGKDIFLFGG 114
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ SFI + +VD I+ I++G+G ++ +
Sbjct: 115 GGLVDSFIKTDIVDEYIIGIIPIILGKGRPLFFGNNPTIKLHL 157
>gi|197121481|ref|YP_002133432.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
gi|196171330|gb|ACG72303.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. K]
Length = 221
Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
L V G + + + LVD++ +++ +V+G G +G L F V
Sbjct: 128 LQVHGSFDLLQTLLRHDLVDALRIWQFPVVLGTG--KRLFGDGALPLAFRLVESQQ 181
>gi|113868680|ref|YP_727169.1| cytosine/adenosine deaminase [Ralstonia eutropha H16]
gi|113527456|emb|CAJ93801.1| Cytosine/adenosine deaminase [Ralstonia eutropha H16]
Length = 169
Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 2 PVSSFDARFMSAALRF--SRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA---YGGCP- 53
+S D + ++ + G +P +V D G +I G P
Sbjct: 11 ELSPLDLELLRQSIALSDASRARGR---HPF--AALVADQAGNIIASAGNNSMPPEGDPT 65
Query: 54 -HAEVQALEEA-----GEEARGATAYVTLEPCSHY 82
HAE+ A +A E+ T Y + EPC
Sbjct: 66 QHAELVAAAQAARALPPEQLADCTLYTSAEPCCMC 100
>gi|291451786|ref|ZP_06591176.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces albus J1074]
gi|291354735|gb|EFE81637.1| bifunctional deaminase-reductase domain-containing protein
[Streptomyces albus J1074]
Length = 208
Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ L D + L +++G G P + + G +VC + +
Sbjct: 151 LLAEGLADELKLIVMPVLLGGGKSLYPADGTRRPLELVSTTTSPAGVNVCTYRVPHD 207
>gi|239979931|ref|ZP_04702455.1| bifunctional deaminase-reductase domain protein [Streptomyces albus
J1074]
Length = 198
Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358
+ L D + L +++G G P + + G +VC + +
Sbjct: 141 LLAEGLADELKLIVMPVLLGGGKSLYPADGTRRPLELVSTTTSPAGVNVCTYRVPHD 197
>gi|81674341|gb|AAI09774.1| CDADC1 protein [Bos taurus]
Length = 248
Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82
++VK+ ++ G+ HA AL + G + + Y + +PCS
Sbjct: 90 GLVVVKNMKIV--GLHCSSEDLHAGKIALIKHGSKLKNCDLYFSRKPCSAC 138
>gi|330468244|ref|YP_004405987.1| bifunctional deaminase-reductase domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328811215|gb|AEB45387.1| bifunctional deaminase-reductase domain-containing protein
[Verrucosispora maris AB-18-032]
Length = 187
Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE--------GGIPSPLEEGYLEKNFMCVRRDY 345
+ + L+D I L+ + +++G+ GG P L + V Y
Sbjct: 125 PDIGRQLLERGLIDEIDLHIAPVLLGDGIRLYEHLGGRPIYLHRVGADDPTAEVDVRY 182
>gi|327188262|gb|EGE55482.1| putative riboflavin biosynthesis protein [Rhizobium etli CNPAF512]
Length = 191
Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GGA + + LVD I L+ ++ G G
Sbjct: 123 KDVSLMGGADIFRQALAGGLVDEIELHIVPVLFGAGTR 160
>gi|190894448|ref|YP_001984741.1| putative riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
gi|190700109|gb|ACE94191.1| putative riboflavin biosynthesis protein [Rhizobium etli CIAT 652]
Length = 191
Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325
+ + GGA + + LVD I L+ ++ G G
Sbjct: 123 KDVSLMGGADIFRQALAGGLVDEIELHIVPVLFGAGTR 160
>gi|302864631|ref|YP_003833268.1| bifunctional deaminase-reductase domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315500924|ref|YP_004079811.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
gi|302567490|gb|ADL43692.1| bifunctional deaminase-reductase domain protein [Micromonospora
aurantiaca ATCC 27029]
gi|315407543|gb|ADU05660.1| bifunctional deaminase-reductase domain protein [Micromonospora sp.
L5]
Length = 203
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ V G + S + LVD + L+ +V+G G EG +
Sbjct: 127 VHVIGSLDLVQSLLRLGLVDRLNLWVYPVVLGTG--KRLFGEGTVPSALRLTES 178
>gi|242129441|gb|ACS83776.1| deaminase reductase [Nonomuraea sp. WU8817]
Length = 204
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
N L + ++ G+ +L+ G +V + + LVD + L + +G
Sbjct: 93 WRNCELITGDLLDAVTSLKADAGIRGILIPGSISVVQQLLAAGLVDELRLLVHPVAARKG 152
Query: 324 GIPSPLEEGYLEKNFMCVRRDYF 346
++G + + F
Sbjct: 153 RR--LFDDGDAPYHLSVTATETF 173
>gi|21756335|dbj|BAC04859.1| unnamed protein product [Homo sapiens]
Length = 268
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 14/226 (6%), Positives = 42/226 (18%), Gaps = 5/226 (2%)
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130
A+ L R + + + + M
Sbjct: 41 DAHTGLCTHVCMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHMQ 100
Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190
+ +E +H L V + + ++
Sbjct: 101 MHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHMQMHPQYPICATHRHTYMETDAH 160
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250
+ + + + ++ L + + L + +
Sbjct: 161 TGLCTHVHMHRHLCTHMQMHPQYPICATHRHTYMETDAHTGLCTHVHMHRHLCTHMQMHP 220
Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-----RGVTSLL 291
++ C + + R + S+L
Sbjct: 221 QYRICATHRHTYMETDVHTGLCAHVHMHRHLCTHTYRCTRNIPSVL 266
>gi|317486652|ref|ZP_07945469.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
gi|316922035|gb|EFV43304.1| cytidine and deoxycytidylate deaminase zinc-binding region
[Bilophila wadsworthia 3_1_6]
Length = 116
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 50 GGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHY 82
HAE+ A+ A ++ + T EPC
Sbjct: 7 DPTAHAEIVAIRNATQKLGQLDLSDCELFTTCEPCPQC 44
>gi|302529706|ref|ZP_07282048.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
gi|302438601|gb|EFL10417.1| riboflavin biosynthesis protein RibD domain-containing protein
[Streptomyces sp. AA4]
Length = 196
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345
G +LV +V + + L+D + L + G G P ++G + ++
Sbjct: 125 GEGDILVNSSVSVIKALLAEDLIDRLYLIICPQIAGGG--PRLFDDGLPGTKWTVAHQET 182
>gi|126695459|ref|YP_001090345.1| RibD/RibG domain-containing protein [Prochlorococcus marinus str.
MIT 9301]
gi|126542502|gb|ABO16744.1| RibD/ribG C-terminal domain-containing protein [Prochlorococcus
marinus str. MIT 9301]
Length = 216
Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 49/162 (30%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
+ + IA S D I G G + K ++ + DA + G+GT++A
Sbjct: 1 MSIPRVIIVIASSLDGRIAFPGGGESHLGSDEDKKILNQNLSMVDATIFGLGTLVAHQST 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
+ + + S K I
Sbjct: 61 YLVKNLNDNDEVNISKSQPISIVASNSKKFNNNWKYFRQPIRRWLISSSKVDNSSNNEFE 120
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308
+K L L +G+ L + GGA + +SFI L+
Sbjct: 121 KELFFEDSWEKTLISLKKQGINDLALLGGAKLINSFIKEDLI 162
>gi|156540962|ref|XP_001601161.1| PREDICTED: similar to nuclear transcription factor, x-box binding 1
(nfx1) [Nasonia vitripennis]
Length = 1323
Score = 37.2 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 48/250 (19%), Gaps = 14/250 (5%)
Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
EE + + + E H+G PC + + + + +
Sbjct: 686 EEICDRPLNCSVH-KCESKCHHGSCEPCDKIFKQECFCGKNTREETCVLDLPPMYSCENV 744
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
V + K H + Q + PI
Sbjct: 745 CNK--VLDCGNHKCKEICHPGQCGPCVLKPETVKHCCCGQTLLTDKRESCLDPIATCDKV 802
Query: 181 NQVH---LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ + EL ++ + I + D++
Sbjct: 803 CSKRLRCGQPSNPHTCQANCHKDDCPECELITKVKCRCGYMDKEIPCRELTTKADDARCE 862
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL------ 291
K + + + K +
Sbjct: 863 KKCTKKRSCGKHKCNQKCCIDIEHICPLPCSKTLSCGRHKCEQTCHRGRCQNCWRSSFDE 922
Query: 292 --VEGGAAVA 299
E GAAV
Sbjct: 923 LYCECGAAVI 932
>gi|238059854|ref|ZP_04604563.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237881665|gb|EEP70493.1| deaminase-reductase domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 224
Score = 37.2 bits (84), Expect = 4.5, Method: Composition-based stats.
Identities = 27/199 (13%), Positives = 48/199 (24%), Gaps = 11/199 (5%)
Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223
+ L G + + + + + +
Sbjct: 25 VCTCEIDLREAGTMRKLIFGMNLSLDGYIAAPGDDLGWSVPSDELFQWWSDRVRATGLAL 84
Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283
S TA P + K + +L+T
Sbjct: 85 YGRKL-WETMSSHWPTADQQPGATPAAIEYAHRWRDMPKVVFSSTTSTVDWNTRLVTGDA 143
Query: 284 GRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
+T L E GGA +A + + + L+D +L ++G G P
Sbjct: 144 VTEITRLRAEDGGPMDIGGATLAAAAMRAGLIDEYVLVTVPALVGG-GTPFFTALDSW-V 201
Query: 337 NFMCVRRDYF-GSDVCLEY 354
+ V F G V Y
Sbjct: 202 SLNLVETRTFPGGVVLTRY 220
>gi|153004134|ref|YP_001378459.1| deaminase-reductase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027707|gb|ABS25475.1| bifunctional deaminase-reductase domain protein [Anaeromyxobacter
sp. Fw109-5]
Length = 200
Score = 36.8 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 32/131 (24%), Gaps = 7/131 (5%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P + + + F N + + D K L
Sbjct: 55 WPQVARDPKATPADRDWAKKLEAKPKYVVSTTRRDFPWSNTHRVEGDLTRAVKALKKATP 114
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344
RG L+ G ++ + LVD +V G G P V
Sbjct: 115 RG----LLVGSPTLSAALQRLDLVDEYRFVVHPVVAGHG--PYLFSGLQPSLRLEFVAAT 168
Query: 345 YFGSDVC-LEY 354
S + L Y
Sbjct: 169 RLESGIVALHY 179
>gi|255940482|ref|XP_002561010.1| Pc16g06760 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585633|emb|CAP93346.1| Pc16g06760 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 158
Score = 36.8 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGV----TAYGGCPHAEV 57
+S D + + +R + + N ++V G V+ T H E
Sbjct: 2 LSDTDIGHLRRCVELARQALE--AGNSPFGSVLVDSTGKVLKEDQNRTITEADVTLHPEF 59
Query: 58 QALEEAGEEARGA-----TAYVTLEPCSHYGRSPP 87
A + A T Y + E C
Sbjct: 60 TLANWAQKHLPLAERTATTVYTSGEHCPMCTTIHA 94
>gi|312220147|emb|CBY00089.1| hypothetical protein [Leptosphaeria maculans]
Length = 866
Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY 49
+++ + + ++V+ G VIG+G Y
Sbjct: 428 YLNLCIEQAANSPLRYRH----GAIVVRGGKVIGQGYNDY 463
>gi|325292577|ref|YP_004278441.1| bifunctional deaminase-reductase domain protein [Agrobacterium sp.
H13-3]
gi|325060430|gb|ADY64121.1| bifunctional deaminase-reductase domain protein [Agrobacterium sp.
H13-3]
Length = 214
Score = 36.8 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 30/120 (25%)
Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263
E + G K + V A K
Sbjct: 62 FSEKSFENIGAWILGRNMFGPIRGAWPDEHWKGWWGEEPPYHVPVFVLTHHARASFAMKG 121
Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ + L L + + GG + ++ ++D + L + + +G+G
Sbjct: 122 GTVFHFVNTGIKAALDMALEAANGRDVRIGGGVSTIRQYMAGSMIDELHLALAPVFLGKG 181
>gi|195024691|ref|XP_001985922.1| GH21081 [Drosophila grimshawi]
gi|193901922|gb|EDW00789.1| GH21081 [Drosophila grimshawi]
Length = 4620
Score = 36.8 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 50/234 (21%), Gaps = 5/234 (2%)
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122
AGE+ G T V + G + + G D+ + G
Sbjct: 3440 AGEDEAGCTPLVCKKDQFQCGNNRCMPYVWVCDGDTDCPDKSDEANCEHVSCGPNDFQCN 3499
Query: 123 -GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK----IAVSQDNMIGMAGCGSVPITGF 177
G + + + + + I
Sbjct: 3500 SGRCIPLTWRCDDEEDCPNGEDEPPSCHTSKATCDPTYFKCNNSKCIPGRWRCDYENDCG 3559
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
++++ GT + C + S I + K +
Sbjct: 3560 DGSDELNCQMRNCSESEFRCGTGKCIKHDFRCDGEIHCDDSSDEINCNITCKPNQFKCAA 3619
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291
+ +DD + C + K +++ G L
Sbjct: 3620 FNTCINKQYQCDGDDDCPDGSDEVNCTCPPDHFTCGNGKCIMSRWKCDGWDDCL 3673
>gi|269956544|ref|YP_003326333.1| bifunctional deaminase-reductase domain-containing protein
[Xylanimonas cellulosilytica DSM 15894]
gi|269305225|gb|ACZ30775.1| bifunctional deaminase-reductase domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 187
Score = 36.8 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
+ + + + S TA P + E + LA K +
Sbjct: 33 FQWWSDRVAATDLSLYGRKL-WETMSPHWPTAAQQPGVTPAEVEFAHRWLAMPKVVFSSS 91
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRSQIVIG 321
+L+T +T L E GGA +A + + + L+D +L + +++G
Sbjct: 92 ISAVDGNARLVTGDAITEITRLKAEDGGPMDIGGATLAAAAVRAGLIDEYVLATAPVLVG 151
Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353
G P + ++ N V F V L
Sbjct: 152 SGTPFFPALDNWV--NLNLVETRTFPEGVVLT 181
>gi|237806939|ref|YP_002891379.1| cytidine deaminase [Tolumonas auensis DSM 9187]
gi|237499200|gb|ACQ91793.1| cytidine deaminase [Tolumonas auensis DSM 9187]
Length = 135
Score = 36.8 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 1 MPVSSFDARFMSA--ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVT-----AYGGC 52
MP D + M A + S H + +N V ++ D +I GV G
Sbjct: 1 MPQID-DTQLMQLMDAAKASIRHAYMPYSNYPVGAAVLTADNRIIA-GVNIENAAYPAGM 58
Query: 53 PHAEVQALEEA 63
AE AL A
Sbjct: 59 -CAERVALGNA 68
>gi|145357676|ref|NP_196185.3| ATNFXL2; protein binding / transcription factor/ zinc ion binding
[Arabidopsis thaliana]
gi|332003522|gb|AED90905.1| transcription factor-like protein [Arabidopsis thaliana]
Length = 880
Score = 36.8 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 24/248 (9%), Positives = 48/248 (19%), Gaps = 10/248 (4%)
Query: 39 GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL-EPCSHYGRSPPCAQFIIECGI 97
V+G G H G VT C + PC Q +
Sbjct: 349 DKVLGCGYHRCPERCH--------RGPCLETCRIVVTKSCRCGVTKKQVPCHQELACERK 400
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ V R + I ++ K + +T+ A
Sbjct: 401 CQRVRDCARHACRRRCCDGECPPCSEICGKKLRCRNHKCQSPCHQGPCAPCPIMVTISCA 460
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+ + + H+ L +
Sbjct: 461 CGETHFEV-PCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPCRLLCDEEYP 519
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ L H ++ ++ + P + + +
Sbjct: 520 CGHKCKLRCHGPRPPPNREFILKPTKKMLHIQAESTPGSPCPRCPEPVWRPCVGHHLAAE 579
Query: 278 LLTILVGR 285
I R
Sbjct: 580 KRMICSDR 587
>gi|298705936|emb|CBJ29066.1| Amino-acid N-acetyltransferase [Ectocarpus siliculosus]
Length = 497
Score = 36.8 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALE 61
+I +D V+G G HAEV L
Sbjct: 375 VITRDETVLGVAFFKRYGQDHAEVGCLA 402
>gi|302425228|sp|Q9FFK8|NFXL2_ARATH RecName: Full=NF-X1-type zinc finger protein NFXL2; Short=AtNFXL2
Length = 883
Score = 36.8 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 24/248 (9%), Positives = 48/248 (19%), Gaps = 10/248 (4%)
Query: 39 GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL-EPCSHYGRSPPCAQFIIECGI 97
V+G G H G VT C + PC Q +
Sbjct: 352 DKVLGCGYHRCPERCH--------RGPCLETCRIVVTKSCRCGVTKKQVPCHQELACERK 403
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ V R + I ++ K + +T+ A
Sbjct: 404 CQRVRDCARHACRRRCCDGECPPCSEICGKKLRCRNHKCQSPCHQGPCAPCPIMVTISCA 463
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+ + + H+ L +
Sbjct: 464 CGETHFEV-PCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPCRLLCDEEYP 522
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ L H ++ ++ + P + + +
Sbjct: 523 CGHKCKLRCHGPRPPPNREFILKPTKKMLHIQAESTPGSPCPRCPEPVWRPCVGHHLAAE 582
Query: 278 LLTILVGR 285
I R
Sbjct: 583 KRMICSDR 590
>gi|302538050|ref|ZP_07290392.1| LOW QUALITY PROTEIN: deaminase-reductase domain-containing protein
[Streptomyces sp. C]
gi|302446945|gb|EFL18761.1| LOW QUALITY PROTEIN: deaminase-reductase domain-containing protein
[Streptomyces sp. C]
Length = 205
Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
+++ G +V + + L+D + L +V+G+G EEG + + F +
Sbjct: 119 IVISGSVSVVRQLLAAGLLDRLQLLVHPVVLGKGLR--LFEEGEPAIPLELLSCEAFDTG 176
Query: 350 VC 351
V
Sbjct: 177 VL 178
>gi|297154385|gb|ADI04097.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Streptomyces bingchenggensis BCW-1]
Length = 158
Score = 36.8 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG---CPHAEVQA 59
+ D R + + + + ++V DG V+ G H E +
Sbjct: 3 NDADLRHLRRCVELAAEALEAGDE--PFGSVLVAADGAVLFEDHNHVAGGDHTRHPEFEI 60
Query: 60 LEEAGEEAR-----GATAYVTLEPCSHY 82
A AT Y + E C
Sbjct: 61 ARWAAAHLTPEERAAATVYTSGEHCPMC 88
>gi|219129188|ref|XP_002184777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403886|gb|EEC43836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 564
Score = 36.8 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 16/69 (23%)
Query: 30 SVACLIVKDGIVIGRGVTA------YGG-----CPHAEVQALEEAGEEA-----RGATAY 73
++ D +++ R GG HAE++ + + A Y
Sbjct: 30 PFGAVLAIDSVIVARAHNQCPAAAKRGGGTGDVTRHAEMELVRLFTSKLTAEERSNAVLY 89
Query: 74 VTLEPCSHY 82
+ EPC
Sbjct: 90 TSTEPCVMC 98
>gi|318042491|ref|ZP_07974447.1| putative riboflavin-specific deaminase [Synechococcus sp. CB0101]
Length = 213
Score = 36.8 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 1/198 (0%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
R + L +AVS D + G+ I G + + A +DA L+G T+
Sbjct: 1 MPRPELRLVLAVSLDGRLAPPAGGAAQIGGRGDRAVLEEALAWADACLIGGRTLRLHGCT 60
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
L E + + + + S+ + +
Sbjct: 61 CLIHSPPLLEQRRQQRRSEQPAAV-VVSRDGCFDPQLRFFAQPLERWLLTPASMAAPAGF 119
Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326
+ L L +G+ L++ GGA +A + + +LVD + L +++G
Sbjct: 120 HAAVQLSSWPEALAALADQGLERLVLLGGADLAGTLLQEQLVDELQLTLCPLLLGGPHSW 179
Query: 327 SPLEEGYLEKNFMCVRRD 344
P + + +
Sbjct: 180 LPAGVSLAPERWQLQEQR 197
>gi|241205530|ref|YP_002976626.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240859420|gb|ACS57087.1| bifunctional deaminase-reductase domain protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 221
Score = 36.8 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349
LL +G + + + + L+D + L +V+G G G
Sbjct: 127 LLTQGSSGLLQTLLAHDLIDELRLLTFPLVLGPGKRLFGQGAKPEALKLTANTISTTGV- 185
Query: 350 VCLEYIG 356
+ Y
Sbjct: 186 IMSVYER 192
>gi|256379086|ref|YP_003102746.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
gi|255923389|gb|ACU38900.1| bifunctional deaminase-reductase domain protein [Actinosynnema
mirum DSM 43827]
Length = 210
Score = 36.8 bits (83), Expect = 5.8, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337
L V G + + + LVD + + +V+G G E
Sbjct: 130 LQVHGSGTLVRALLEHGLVDELQVITFPVVVGAGKRLFGEAPVTFELR 177
>gi|254787858|ref|YP_003075287.1| cytosine deaminase [Teredinibacter turnerae T7901]
gi|237685613|gb|ACR12877.1| cytosine deaminase [Teredinibacter turnerae T7901]
Length = 153
Score = 36.8 bits (83), Expect = 5.9, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 30 SVACLIVKDGIVIGRGVTAY--GGCP--HAEVQALEEAGE--EARGATAYVTLEPCSHY 82
+ I++ G V+ G G H E +E+ G + T + +L PC
Sbjct: 27 PIGACIMQAGQVVAVGHNHRIQCGSNIRHGETDCIEKCGHTVDFSQVTLFSSLTPCLMC 85
>gi|226305473|ref|YP_002765433.1| hypothetical protein RER_19860 [Rhodococcus erythropolis PR4]
gi|226184590|dbj|BAH32694.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 214
Score = 36.5 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 33/148 (22%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235
+ + G + D N E
Sbjct: 34 HGEMFAWAGATASWPNRTDPGGSRGIDDYFTRDFSNNIGAEIMGRNKFAPYRGPWENLEW 93
Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295
P + +F + + D L + + GG
Sbjct: 94 QGWWGDEPPFHTPVFVLTHHVRPSFTLSDTTFHFVDADPATALEQAREAAQGKDVRLGGG 153
Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323
+ F+++ LVD++ + I G G
Sbjct: 154 VSTIREFLDADLVDTMHIAVCPIEFGSG 181
>gi|119718681|ref|YP_925646.1| deaminase-reductase domain-containing protein [Nocardioides sp.
JS614]
gi|119539342|gb|ABL83959.1| bifunctional deaminase-reductase domain protein [Nocardioides sp.
JS614]
Length = 202
Score = 36.5 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341
GG + + + +VD + + + +V+G G E + + +
Sbjct: 139 GGGDLIRQGLGAGVVDELAISTAPVVLGGG--KRLFEGNTSDLDLEVL 184
>gi|24216016|ref|NP_713497.1| dihydrofolate reductase-like protein [Leptospira interrogans
serovar Lai str. 56601]
gi|24197242|gb|AAN50515.1| dihydrofolate reductase-like protein [Leptospira interrogans
serovar Lai str. 56601]
Length = 197
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + A + KK+ L + + G
Sbjct: 60 GRKTFEIFASYWPEHADFWPGINEGTKYVMSKTVKKSDWKNSVFLESLADIKKLKNSEG- 118
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + V G + + LVD + L + + G +G + F +
Sbjct: 119 SDIQVWGSGELIQLLFKNDLVDELWLKIFPVTLNTG--KRLFGDGTIPAAFTLIES 172
>gi|302384487|ref|YP_003820309.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
saccharolyticum WM1]
gi|302195115|gb|ADL02686.1| CMP/dCMP deaminase zinc-binding protein [Clostridium
saccharolyticum WM1]
Length = 161
Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQA 59
+ D + + SR + N L+ KDG ++ +T HAE Q
Sbjct: 4 NIDMKNLKRCAEISRQSRE--AGNTPFGALLAGKDGSILLEQPNIEITEGKCTGHAETQV 61
Query: 60 LEEA-----GEEARGATAYVTLEPCSHY 82
E A + T Y T EPC+
Sbjct: 62 AERASQLYSKDFLSDCTLYTTAEPCAMC 89
>gi|255530790|ref|YP_003091162.1| bifunctional deaminase-reductase domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255343774|gb|ACU03100.1| bifunctional deaminase-reductase domain protein [Pedobacter
heparinus DSM 2366]
Length = 183
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 42/160 (26%), Gaps = 8/160 (5%)
Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257
+ + + + K D K + +A I L
Sbjct: 28 HYHYTNLLNNAGSILYGRITYQLMQFWQTLLKNPSDEKSMNDFAIAIDKIPKIVFSNTLK 87
Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317
++ +L +LV G ++ + L+D + L
Sbjct: 88 STDWDSAQLSDRTLEEEVLELKQQSGK----DILV-GSRSLIIQLMKLNLIDELQLCIYP 142
Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYF-GSDVCLEYIG 356
++ G G+P E ++ F G V L Y
Sbjct: 143 VIAGA-GLPLF-ENLKDRTILKLIKTKTFSGGAVTLYYER 180
>gi|15965755|ref|NP_386108.1| hypothetical protein SMc04173 [Sinorhizobium meliloti 1021]
gi|307308688|ref|ZP_07588387.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
gi|307318822|ref|ZP_07598254.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|15075024|emb|CAC46581.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306895543|gb|EFN26297.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti AK83]
gi|306900893|gb|EFN31503.1| bifunctional deaminase-reductase domain protein [Sinorhizobium
meliloti BL225C]
Length = 219
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 23/74 (31%)
Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
D +L L LL +G + ++ LVD + + +V+G+G
Sbjct: 103 WQNSRTLGSDPVAMLKKLKSEEGPDLLTQGSTDFLQTLFSNDLVDEMYISYFPVVLGKGK 162
Query: 325 IPSPLEEGYLEKNF 338
+
Sbjct: 163 RLFGHGAMPMAMKL 176
>gi|110347106|ref|YP_665924.1| bifunctional deaminase-reductase-like [Mesorhizobium sp. BNC1]
gi|110283217|gb|ABG61277.1| bifunctional deaminase-reductase-like protein [Chelativorans sp.
BNC1]
Length = 167
Score = 36.5 bits (82), Expect = 6.8, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 32/141 (22%), Gaps = 12/141 (8%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+++ I + +P K + R + G
Sbjct: 29 GRVTYQMMEEAWRHETRTITPPDWTEPFARTIDAMKKYVVSNTLERVDWNAERVSGNLGE 88
Query: 288 ---------TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
L GG + + L+D + G G P+
Sbjct: 89 AVRKLKQQPGRALFTGGVKLPMALAELGLIDEYEFVVQPRLAGHG--PTLFAGLSKYIEL 146
Query: 339 MCVRRDYFGSD-VCLEYIGKN 358
V R S V L Y +
Sbjct: 147 KLVDRQELSSGAVALRYEPRR 167
>gi|271965167|ref|YP_003339363.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270508342|gb|ACZ86620.1| deaminase-reductase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 181
Score = 36.5 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338
+ + G ++ + + L+D + L IV+G G P G +
Sbjct: 113 KCIHLSGSISLTRALLAVGLIDRLRLLVHPIVLGTGQRLFPEGIGVVPLKL 163
>gi|317054543|ref|YP_004118568.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
gi|316952538|gb|ADU72012.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b]
Length = 158
Score = 36.5 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVTAYGGCPHAE---- 56
++ D F+ + R + L +P ++V V+ HAE
Sbjct: 2 INDHDIHFLRLSNEVGRRAIAL-GKHP-FGAVLVAPDQQTVLLTQCN-IDTVNHAESTLA 58
Query: 57 -VQALEEAGEEARGATAYVTLEPCSHY 82
+ A + E T Y +EPC
Sbjct: 59 RIAATNFSAEYLWQCTLYTAVEPCCMC 85
>gi|117925508|ref|YP_866125.1| CMP/dCMP deaminase, zinc-binding [Magnetococcus sp. MC-1]
gi|117609264|gb|ABK44719.1| CMP/dCMP deaminase, zinc-binding protein [Magnetococcus sp. MC-1]
Length = 150
Score = 36.5 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 14/74 (18%)
Query: 21 HVGLTSTNPSVACLI-VKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGA 70
G V LI G V+ G HAE+ A+ A G
Sbjct: 28 ARGEV----PVGALIYAAQGWVVSMAGNGPIGAHDPMAHAEIVAMRCAARRLSNYRLSGL 83
Query: 71 TAYVTLEPCSHYGR 84
V+LEPC +
Sbjct: 84 CMVVSLEPCPVCQQ 97
>gi|330507217|ref|YP_004383645.1| hypothetical protein MCON_1091 [Methanosaeta concilii GP-6]
gi|328928025|gb|AEB67827.1| conserved domain protein [Methanosaeta concilii GP-6]
Length = 281
Score = 36.5 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 26/109 (23%), Gaps = 41/109 (37%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV--------------KDGIVIGRGVTAYGGCPH 54
R+M A +R V A LI+ V A H
Sbjct: 103 RWMQLACLAARESVEEKGG--PFAALILQIDNCTDQILRYWINHNQVTS----ALDPTAH 156
Query: 55 AEVQALEEAGE---------------------EARGATAYVTLEPCSHY 82
AE+ A+ A + Y + EPC
Sbjct: 157 AEIMAIRSACASLGVFDLGSIRKDESKLAQPGDLSHCVIYSSAEPCPMC 205
>gi|45656725|ref|YP_000811.1| hypothetical protein LIC10834 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45599961|gb|AAS69448.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 197
Score = 36.5 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287
+ + + A + KK+ L + + G
Sbjct: 60 GRKTFEIFASYWPEHADFWPGINEGTKYVMSKTVKKSDWKNSVFLESLADIKKLKNSEG- 118
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + V G + + LVD + L + + G +G + F +
Sbjct: 119 SDIQVWGSGELIQLLFKNDLVDELWLKIFPVTLNTG--KRLFGDGIIPVAFTLIES 172
>gi|77458955|ref|YP_348461.1| cytidine/deoxycytidylate deaminase, zinc-binding region
[Pseudomonas fluorescens Pf0-1]
gi|77382958|gb|ABA74471.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas
fluorescens Pf0-1]
Length = 169
Score = 36.5 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 3 VSSFDARFMS--AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTA---YGGCP--H 54
+S+ D + AL + G A L+ ++G VI G P H
Sbjct: 12 ISALDLTLLRQTIALSEASKQRGR----HPFAALVADRNGKVIVEAGNNSMPPEGDPTQH 67
Query: 55 AEVQALEE-----AGEEARGATAYVTLEPCSHY 82
AE+ A + +E T Y + EPC
Sbjct: 68 AELVAAAAAAKLLSPQELELCTLYTSAEPCCMC 100
>gi|331694264|ref|YP_004330503.1| bifunctional deaminase-reductase domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326948953|gb|AEA22650.1| bifunctional deaminase-reductase domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 211
Score = 36.5 bits (82), Expect = 7.5, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 26/106 (24%)
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ + L V K +
Sbjct: 75 MGRNMFSPGRGEWDLSWTGWWGDTPPFGHDVFVLTHHDREPIGMKGGTTFRFVTTGIDDA 134
Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
L G + + GG + + +RLVD + L +++G G
Sbjct: 135 LALARAAAGDRDVRLGGGVSTVRECLRARLVDEMDLAVVPVLLGSG 180
>gi|312282337|dbj|BAJ34034.1| unnamed protein product [Thellungiella halophila]
Length = 838
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 22/248 (8%), Positives = 48/248 (19%), Gaps = 10/248 (4%)
Query: 39 GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL-EPCSHYGRSPPCAQFIIECGI 97
V+G G H G VT C + PC Q +
Sbjct: 354 DKVLGCGYHRCPERCH--------RGPCLETCRIVVTKSCRCGGTKKQVPCHQELACERK 405
Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157
+ + R + I ++ K + +T+ A
Sbjct: 406 CQRMRDCARHACRRRCCDGECPPCSEICGKKLPCRNHKCQSPCHQGLCAPCPIMVTISCA 465
Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217
+ + + H+ L +
Sbjct: 466 CGETHFEV-PCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPCRLLCDEEYP 524
Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277
+ L H ++ ++ P + + +
Sbjct: 525 CGHKCKLRCHGPRPPPNREFMIKPTKKMLNFHAESTPGSPCPRCPELVWRPCVGHHLAAE 584
Query: 278 LLTILVGR 285
+ + R
Sbjct: 585 KMMVCSDR 592
>gi|302383496|ref|YP_003819319.1| CMP/dCMP deaminase zinc-binding protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302194124|gb|ADL01696.1| CMP/dCMP deaminase zinc-binding protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 150
Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 30 SVACLIVKD--GIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEP 78
V +IV + G V+ G A HAE+QA+ A G T YVTLEP
Sbjct: 18 PVGAVIVDETTGTVVATGANAPISGHDPTAHAEIQAIRAAAAATGNYRLTGLTLYVTLEP 77
Query: 79 CSHY 82
C+
Sbjct: 78 CAMC 81
>gi|219113417|ref|XP_002186292.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583142|gb|ACI65762.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 180
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 31/100 (31%), Gaps = 33/100 (33%)
Query: 11 MSAALRFSRWHV--GLTSTNPSVACLIV----KDGIVIGRGVTAYGGCP-----HAEVQA 59
M ALR ++ + G V C+IV +V+ G H E Q
Sbjct: 1 MRQALRVAKAALDIGEV----PVGCVIVMPTETGPVVVSHGANQVNATRDGTWKH-EKQN 55
Query: 60 LEEAG-----------------EEARGATAYVTLEPCSHY 82
+ E EE + YVT EPC
Sbjct: 56 IREGTGEWRNAYGWGSGRRFKPEELKKCRLYVTCEPCIMC 95
>gi|110639423|ref|YP_679632.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
gi|110282104|gb|ABG60290.1| dihydrofolate reductase [Cytophaga hutchinsonii ATCC 33406]
Length = 177
Score = 36.1 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347
++LV G ++ + L+D L I++G+G I + + C+R + +
Sbjct: 106 KNILV-GSPSLIVALTQFGLIDEYQLCIQPIILGKGLI--LFKHMQDRIDLKCIRTETYA 162
Query: 348 SD-VCLEYIG 356
S + Y
Sbjct: 163 SGAILARYEP 172
>gi|307324804|ref|ZP_07604010.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889686|gb|EFN20666.1| bifunctional deaminase-reductase domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 189
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 36/164 (21%), Gaps = 8/164 (4%)
Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253
+ T + + E + + +
Sbjct: 28 SMRYWTAEMERADALLFGRVTYEMMESAWRKPATGTWPDWMDEWQIPFAETIDRAKKYVV 87
Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313
+ + +++L L GG + + L+D
Sbjct: 88 SSTLSGVDWNADLVQGDLGQAVQRLKQEPGE-----GLWVGGVTLPLALAELGLIDEYEF 142
Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
+V G G P+ L V R F S V L Y
Sbjct: 143 LVQPVVAGHG--PTLLAGLGERIQLELVDRHEFRSGAVALRYRP 184
>gi|327409667|ref|YP_004347087.1| putative nucleoside deaminase [Lausannevirus]
gi|326784841|gb|AEA06975.1| putative nucleoside deaminase [Lausannevirus]
Length = 81
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--------YGGC 52
M + RF A + + + C+ V G V+ G
Sbjct: 1 MQIPQTKQRFFEMARQQALKSEMSQK----IGCVAVIGGKVVSFGYNRDMDGLVLGKSCR 56
Query: 53 PHAEVQALEEAGEEARGA 70
HAE+ L+ + ++ A
Sbjct: 57 MHAEMCTLKRIFKGSKCA 74
>gi|296138780|ref|YP_003646023.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296026914|gb|ADG77684.1| bifunctional deaminase-reductase domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 218
Score = 36.1 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 1/127 (0%)
Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276
+ + V + D +
Sbjct: 76 MGRNKFGPQRGPWEDESWRGWWGEETPFKTPVFVLTHHPRPSIEMGDGTVFHFIDASPAE 135
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336
L + + GG A F+ + L+D + L IV+G G +++
Sbjct: 136 ALAQAREAADGLDVRIGGGVATVRQFLAADLIDHMHLVEVPIVLGRGERLW-DGLEGVQE 194
Query: 337 NFMCVRR 343
F+
Sbjct: 195 RFIIESV 201
>gi|226306637|ref|YP_002766597.1| hypothetical protein RER_31500 [Rhodococcus erythropolis PR4]
gi|226185754|dbj|BAH33858.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 205
Score = 36.1 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 12/157 (7%)
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
R Q ++ ++S + A +A + E + P R K +
Sbjct: 46 RYWTAQMERADALLFGRVTYEMMESAWRRPATVAWPDWMDEWEIPFAEAMDRAKKYVVSS 105
Query: 270 CDCRDLKKLLTILVGRG--VTSL-------LVEGGAAVAHSFINSRLVDSIILYRSQIVI 320
+ G V L L GG + + + L+D ++
Sbjct: 106 TLSGVDWNAELVQGDLGPAVQRLKEQPGEGLWVGGVTLPLALADLGLIDEYEFVVQPVLA 165
Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIG 356
G G P+ L V R F S V + Y
Sbjct: 166 GHG--PTLLAGLRERIQLELVDRHEFQSGAVAVRYRP 200
>gi|269956672|ref|YP_003326461.1| bifunctional deaminase-reductase domain-containing protein
[Xylanimonas cellulosilytica DSM 15894]
gi|269305353|gb|ACZ30903.1| bifunctional deaminase-reductase domain protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 278
Score = 36.1 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+L EGG + + + LVD + + S ++G G
Sbjct: 188 RRVLCEGGPHLLADLLAAGLVDELCVTTSPRLVGPG 223
>gi|262200337|ref|YP_003271545.1| CMP/dCMP deaminase zinc-binding protein [Gordonia bronchialis DSM
43247]
gi|262083684|gb|ACY19652.1| CMP/dCMP deaminase zinc-binding protein [Gordonia bronchialis DSM
43247]
Length = 143
Score = 36.1 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 30 SVACLIVKDGIV-IGRGVTAY----GGCPHAEVQALEEA------GEEARGATAYVTLEP 78
+ ++ G + + R HAE+ AL A G G T VT+EP
Sbjct: 17 PIGAVVFDPGGIELARAANRREADADPTAHAEILALRAAAAAFGDGWRLPGCTIAVTVEP 76
Query: 79 CSHY 82
C+
Sbjct: 77 CTMC 80
>gi|242218661|ref|XP_002475119.1| predicted protein [Postia placenta Mad-698-R]
gi|220725736|gb|EED79711.1| predicted protein [Postia placenta Mad-698-R]
Length = 239
Score = 36.1 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
++TL A S D I G + ++G S H R ++ L
Sbjct: 18 PYLTLTFAQSLDAKIAGPGGKQLALSGRESLTMTHWGRYHCPRPII-----------LDS 66
Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
+L + ++ + I + L LA +
Sbjct: 67 QLRLSPDCKLLKNYRAGTGRRPWVVCIGYEKKTEAQEKESNQKKQALRLAGARVVDETGS 126
Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
L L+ L G+ S++VEGGA V SF+
Sbjct: 127 KGLISLPMLMMSLSSMGIRSVMVEGGARVIQSFLAE 162
>gi|187608406|ref|NP_001119919.1| hypothetical protein LOC791769 [Danio rerio]
gi|169145700|emb|CAQ15728.1| novel protein similar to vertebrate tRNA-specific adenosine
deaminase 3 (ADAT3) [Danio rerio]
Length = 336
Score = 36.1 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 7/119 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGC---PHAEVQALEE 62
+M A++ ++ L +V +IV K +I G HA + ++
Sbjct: 170 REYMCVAVKAAKSGRELGMD--AVGAVIVDPKTEQIIAVAHDCKRGSHPLHHAVMVCIDL 227
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G P + S L
Sbjct: 228 VACGQDGGAYKYEKYPACRFSCSNSVCDGKETGLPYICTGYDLYVTREPCVMCAMALVH 286
>gi|312139752|ref|YP_004007088.1| deaminase/reductase [Rhodococcus equi 103S]
gi|311889091|emb|CBH48404.1| putative deaminase/reductase [Rhodococcus equi 103S]
Length = 212
Score = 36.1 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 1/119 (0%)
Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284
P + + + D L
Sbjct: 82 PQRGPWENLDWEGWWGEEPPFHTPVFVLTHHARPSITRGETTFHFVDGEPATILEEAKEA 141
Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343
+ + GG F+++ LVD++ + S I G G+ L F
Sbjct: 142 AQGKDVRLGGGVTTIREFLDADLVDTMHVAVSPITFG-TGLRLWDTPDELRDRFHLETV 199
>gi|148238074|ref|NP_001079355.1| kielin/chordin-like protein precursor [Xenopus laevis]
gi|82174758|sp|Q9IBG7|KCP_XENLA RecName: Full=Kielin/chordin-like protein; AltName:
Full=Cysteine-rich motor neuron 2 protein; Short=CRIM-2;
AltName: Full=Kielin; Flags: Precursor
gi|7768636|dbj|BAA95483.1| Kielin [Xenopus laevis]
Length = 2327
Score = 36.1 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 19/241 (7%), Positives = 42/241 (17%), Gaps = 16/241 (6%)
Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
QAL G T +PC + + + + G
Sbjct: 1800 QALSNCTNTLVGNEIQATDDPCYTCHCKDLTWVCVHQPCPALSCPRSEQF----THSGSC 1855
Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177
+V+ + + + +
Sbjct: 1856 CPVCNECVVEIEGRRVPDGETWTDRQDPCVTCTCTLGHVECQIEECQPVQCQEGERKVKR 1915
Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237
+ G + + + + S
Sbjct: 1916 PGTCCHECQASAVSCWYQGQRFL--SNEHWQVDECTACTCVSGEVHCHSE-RCPQVSCTA 1972
Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL---VEG 294
+ + + P A + + D + T +L EG
Sbjct: 1973 EETPALIPGMCCPHCIPRPATCIAFGDPHYRTFDGKM------YHFQGSCTYVLSEDCEG 2026
Query: 295 G 295
G
Sbjct: 2027 G 2027
>gi|119358266|ref|YP_912910.1| CMP/dCMP deaminase, zinc-binding [Chlorobium phaeobacteroides DSM
266]
gi|119355615|gb|ABL66486.1| CMP/dCMP deaminase, zinc-binding protein [Chlorobium
phaeobacteroides DSM 266]
Length = 197
Score = 36.1 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 15 LRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGV----TAYGGCPHAEVQALEEAGEEAR 68
+ +R + + P + + G ++ GV T+ HAE+ A+ A ++
Sbjct: 39 IELARLNTVEKTGGP-FGAAVFESRSGKLVAAGVNVVVTSSCSHAHAEMVAILLAQQKLS 97
Query: 69 GATAYVTLEPCSHYGRSPPCAQFII 93
++ P S
Sbjct: 98 TYDLGLSSLPDHELVSSCEPCAMCF 122
>gi|326384750|ref|ZP_08206427.1| hypothetical protein SCNU_17500 [Gordonia neofelifaecis NRRL
B-59395]
gi|326196558|gb|EGD53755.1| hypothetical protein SCNU_17500 [Gordonia neofelifaecis NRRL
B-59395]
Length = 222
Score = 36.1 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323
V F+ + LVD + + + I++G G
Sbjct: 162 TVVRDFLLAGLVDRLHVAIAPILLGRG 188
>gi|22204218|emb|CAD43470.1| novel protein [Danio rerio]
Length = 336
Score = 36.1 bits (81), Expect = 9.8, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 7/119 (5%)
Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGC---PHAEVQALEE 62
+M A++ ++ L +V +IV K +I G HA + ++
Sbjct: 170 REYMCVAVKAAKSGRELGMD--AVGAVIVDPKTEQIIAVAHDCKRGSHPLHHAVMVCIDL 227
Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121
G P + S L
Sbjct: 228 VACGQDGGAYNYEKYPACRFSCSNSVCDGKETGLPYICTGYDLYVTREPCVMCAMALVH 286
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.111 0.315
Lambda K H
0.267 0.0336 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,500,203,642
Number of Sequences: 14124377
Number of extensions: 143949533
Number of successful extensions: 307352
Number of sequences better than 10.0: 8617
Number of HSP's better than 10.0 without gapping: 5282
Number of HSP's successfully gapped in prelim test: 3335
Number of HSP's that attempted gapping in prelim test: 288388
Number of HSP's gapped (non-prelim): 9266
length of query: 364
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 224
effective length of database: 2,865,380,850
effective search space: 641845310400
effective search space used: 641845310400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (36.1 bits)