RPSBLAST alignment for GI: 254780348 and conserved domain: TIGR00326
>gnl|CDD|161819 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. Length = 344
Score = 271 bits (695), Expect = 2e-73
Identities = 140/348 (40%), Positives = 199/348 (57%), Gaps = 11/348 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL ++ G T NP V C+IVK+G ++G G G PHAEV AL +AGE A+GA
Sbjct: 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
TAYVTLEPCSH GR+PPCA+ IIE GI++VVV + DP+ V+GRG + L Q GI V +
Sbjct: 61 TAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGI 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ E + +L R ++ LK+A S D I A S IT ++ LRAQ
Sbjct: 121 LKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SDAILVG GTV AD+P LT RL+ E P+R++LD ++ +K+I +AP I T
Sbjct: 181 SDAILVGGGTVKADNPALTARLDEATEQ-PLRVVLDTQLRIPEFAKLIPQ--IAPTWIFT 237
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D L + +NI + +++++T L RG+ S+LVEGG + SF++ LVD
Sbjct: 238 TARDKKKRLEAFE--VNIFPLEKVTIREVMTQLGKRGINSVLVEGGPNLLGSFLDEGLVD 295
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+I+Y + ++G P E +K NF + + G D+ L
Sbjct: 296 ELIIYIAPKLLGGTHAPGLCSEPGFQKMADALNFKFLEINQIGPDILL 343