RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >gnl|CDD|30466 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism]. Length = 146 Score = 179 bits (455), Expect = 1e-45 Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 1/143 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D R+M AL + G TS NPSV C+IVKDG ++G G G PHAEV AL A Sbjct: 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I+ G+ RVVV + DP+ V+G GL L G Sbjct: 63 GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQ 145 I V+ ++E E + +L R Sbjct: 123 IEVEVGILEEEAEKLNEGFLKRM 145 >gnl|CDD|32168 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]. Length = 218 Score = 167 bits (425), Expect = 3e-42 Identities = 86/214 (40%), Positives = 120/214 (56%), Gaps = 8/214 (3%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R +TLK+A+S D I A S ITG ++ VH LRA+SDAILVG GTVLAD+P L Sbjct: 2 GRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSL 61 Query: 208 TCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 T RL G +E +P+R+ILD +L LDS++ +T AP I+VT + L ++ + Sbjct: 62 TVRLPEGGEERNPVRVILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRE-LKEAGVE 120 Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +I DL LL L RG+ S+LVEGGA + SF+ + LVD ++LY + ++G Sbjct: 121 VILLPDGRVDLAALLEELAERGINSVLVEGGATLNGSFLEAGLVDELLLYIAPKILGGSA 180 Query: 325 IPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 G+L +R + G DV LEY Sbjct: 181 RTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEY 214 >gnl|CDD|29827 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.. Length = 115 Score = 142 bits (359), Expect = 2e-34 Identities = 63/115 (54%), Positives = 76/115 (66%), Gaps = 2/115 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68 M AL + GLTS NP V C+IV D G ++G G G PHAEV AL AGE+ AR Sbjct: 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLAR 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GAT YVTLEPCSH+G++PPC IIE GI+RVVV V DP+ V+G+G + L G Sbjct: 61 GATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 >gnl|CDD|145176 pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186. Length = 196 Score = 128 bits (324), Expect = 2e-30 Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 11/204 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ LK A+S D I AG S ITG ++ VH LRA++DAILVG GTV AD+P LT R Sbjct: 2 YVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTVR 61 Query: 211 L--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 E P R+++D ++ LD++++ ++ TE D + + Sbjct: 62 WVKGRAAERQPPRVVVDSTLRVPLDARVLNDD-APTLVATTEPADKEKVEKLKVLRV--- 117 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 DLK+LL L RG+ SLLVEGGA +A S + + LVD + LY + ++G GG Sbjct: 118 -----DLKELLRELKERGIRSLLVEGGATLAGSLLRAGLVDELRLYIAPKLLGGGGRTLF 172 Query: 329 LEEGYLEKNFMCVRRDYFGSDVCL 352 EG+L V + G+ V L Sbjct: 173 GGEGFLALKLKLVSSEAIGNGVVL 196 >gnl|CDD|144101 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region. Length = 104 Score = 81.2 bits (201), Expect = 4e-16 Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 17/109 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQ 58 +D FM AL + +N V +IVK DG +I G Y HAE Sbjct: 1 MEWDEYFMRLALE-AAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERN 59 Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 A+ A G + GAT YVTLEPC C Q IIE GI++VV Sbjct: 60 AIRNAGRLGEGIKLEGATLYVTLEPCGM------CRQAIIESGIKKVVF 102 >gnl|CDD|30935 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]. Length = 152 Score = 63.0 bits (153), Expect = 1e-10 Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 16/130 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58 +S D FM AL+ ++ G P A ++ DG +I RG P HAE+ Sbjct: 4 LSEKDEDFMREALKEAKK-AGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEIL 62 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ A E T YVTLEPC P CA II I RVV DP G Sbjct: 63 AIRAAAETLGNYRLKDCTLYVTLEPC------PMCAGAIIWARIDRVVYGASDPKTGAIG 116 Query: 114 RGLQWLSQKG 123 L L Sbjct: 117 SLLDILKDPR 126 >gnl|CDD|29825 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.. Length = 96 Score = 61.6 bits (149), Expect = 4e-10 Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 24/109 (22%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV-ACLIV-KDGIVIGRG----VTAYGGCPHAEVQ 58 + A + A +N V ACL+ KDG +GRG AY C HAE Sbjct: 4 ALKAADLGYA----------KESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERT 53 Query: 59 ALEEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 AL AG E +G YV L PC CAQ IIE GI+ V+V + Sbjct: 54 ALFNAGSEGDTKGQMLYVALSPCGA------CAQLIIELGIKDVIVVLT 96 >gnl|CDD|29829 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.. Length = 131 Score = 56.1 bits (135), Expect = 2e-08 Identities = 42/135 (31%), Positives = 51/135 (37%), Gaps = 47/135 (34%) Query: 7 DARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGGCP----------- 53 D FM+ A L ST P V +IVKD +I T Y G P Sbjct: 1 DEYFMAIAR-----LAALRSTCPRRQVGAVIVKDKRIIS---TGYNGSPSGLPHCAEVGC 52 Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93 HAE A+ +A G GAT YVTL PC CA+ II Sbjct: 53 ERDDLPSGEDQKCCRTVHAEQNAILQAARHGVSLEGATLYVTLFPCIE------CAKLII 106 Query: 94 ECGIRRVVVCVDDPD 108 + GI++VV D Sbjct: 107 QAGIKKVVYAEPYDD 121 >gnl|CDD|32314 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]. Length = 164 Score = 56.1 bits (135), Expect = 2e-08 Identities = 44/154 (28%), Positives = 59/154 (38%), Gaps = 38/154 (24%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GGCP- 53 S +D FM+ A + T V +IVKDG +I G GC Sbjct: 6 SMWDEYFMAIAELVALRS---TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLR 62 Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 HAE A+ +A G GAT YVT PCS CA+ II+ Sbjct: 63 DKVVFVTTCGHCCRTLHAEQNAILQAARHGVGLEGATLYVTHFPCS------NCAKLIIQ 116 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GI+ VV P V+ + L + G+ V + Sbjct: 117 AGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQ 150 >gnl|CDD|29828 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.. Length = 109 Score = 53.0 bits (127), Expect = 1e-07 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 18/113 (15%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV--TAYGGCP--HAEVQALEEAGE 65 M A+ +R L +IV DG VI RG G P HAE+ A+ A Sbjct: 1 MRLAIELAR--KALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58 Query: 66 EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 G T Y TLEPC P CA ++ I+RVV DP + G Sbjct: 59 RLGSYLLSGCTLYTTLEPC------PMCAGALLWARIKRVVYGASDPKLGGIG 105 >gnl|CDD|36236 KOG1018, KOG1018, KOG1018, Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]. Length = 169 Score = 44.6 bits (105), Expect = 5e-05 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 20/114 (17%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAE 56 +S D FM A+ + V ++V DG V+ G HAE Sbjct: 6 ELSDHDIAFMVEAVEEA-KKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAE 64 Query: 57 VQALEEAGEEAR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 V A+ E + T YVT EPC P CA + + G++RVV Sbjct: 65 VIAIREEEVMCKSLRTIDLSETTLYVTCEPC------PMCAGALAQSGVKRVVF 112 >gnl|CDD|38337 KOG3127, KOG3127, KOG3127, Deoxycytidylate deaminase [Nucleotide transport and metabolism]. Length = 230 Score = 42.7 bits (100), Expect = 1e-04 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 39/125 (31%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTA------YGGCP-- 53 S+D FM+ A + S +P+ AC++ ++ ++G G P Sbjct: 65 SWDDYFMAIAFLSA-----KRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWC 119 Query: 54 ----------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE A+ G E G + YVTL PC+ CA+ II+ G Sbjct: 120 KAALSTNLDLKYCYVVHAEENAILNKGRERVGGCSLYVTLCPCNE------CAKLIIQAG 173 Query: 97 IRRVV 101 I+ V Sbjct: 174 IKEVY 178 >gnl|CDD|30611 COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]. Length = 167 Score = 34.9 bits (80), Expect = 0.039 Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ L +L+ + + GG + F+ + L D +IL +++GEG Sbjct: 82 SIEEALLLLLKEEGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEG 131 >gnl|CDD|177068 CHL00147, rpl4, ribosomal protein L4; Validated. Length = 215 Score = 29.2 bits (66), Expect = 1.7 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINIIYCDCRDLKKLL 279 I L ++LD KI +IIV E + L L+ R KN+ +I D ++K LL Sbjct: 145 INLLKKLNINLDQKI--------LIIVPEKTEN-LYLSTRNLKNVELISADTLNIKSLL 194 >gnl|CDD|36316 KOG1100, KOG1100, KOG1100, Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]. Length = 207 Score = 28.4 bits (63), Expect = 3.0 Identities = 10/33 (30%), Positives = 12/33 (36%) Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 A V L PC H C + + C I R Sbjct: 167 REATVLLLPCRHLCLCGICDESLRICPICRSPK 199 >gnl|CDD|31309 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]. Length = 767 Score = 28.4 bits (62), Expect = 3.6 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 90 QFIIECGIRRVVVCVDD-----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144 + E V V VD+ + G + +Q +I + E+ + + Sbjct: 621 SKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAGKGVEVGTVDGF 680 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 Q ++ I L + S D+ + G N V L RA+ I+VG + L D Sbjct: 681 QGREKDVIILSLVRSNDDKGEIGFLG-----DPRRLN-VALTRAKRKLIVVGSSSTLESD 734 Query: 205 PELTCRLNGLQE 216 P +N L+ Sbjct: 735 PLYKRLINDLKR 746 >gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]. Length = 542 Score = 27.8 bits (61), Expect = 4.4 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSF-INSRLVDSIILYRSQIVIGEGGIPSP 328 LT+L G V +L+EG AV I + ++V+ G I SP Sbjct: 216 PNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSP 268 >gnl|CDD|176146 cd08457, PBP2_OccR, The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulator OccR, which is involved in the catabolism of octopine. Opines are low molecular weight compounds found in plant crown gall tumors produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. In Agrobacterium tumefaciens, OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine, an arginine derivative. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Length = 196 Score = 27.8 bits (62), Expect = 4.7 Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI 42 + AL R +G+ +P+ A + DGIVI Sbjct: 124 RRPIIEVNLSHTALSLVREGLGIAIIDPATAIGLPLDGIVI 164 >gnl|CDD|29677 cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.. Length = 613 Score = 27.5 bits (61), Expect = 5.3 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEV---QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 LI ++ +V+ G A G A + +A E AG+ + + + P H G ++ Sbjct: 452 LIKRNVLVLATGCGA-GALAKAGLMDPEAAELAGDGLKAVCKALGIPPVLHMGSCVDNSR 510 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + + VD PD+ + +W+ +K + Sbjct: 511 IVDLATALANELGVDIPDLPLVASAPEWMEEKAVA 545 >gnl|CDD|37174 KOG1963, KOG1963, KOG1963, WD40 repeat protein [General function prediction only]. Length = 792 Score = 27.7 bits (61), Expect = 5.9 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 17/94 (18%) Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 ++G++V +E+ K FL + L I VS D+ + Sbjct: 271 REGVLVLWQLETGKKQFL--------PRLGSPILHIVVSPDSDLYSLVLED--------- 313 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 NQ+HL++A I I + P R L Sbjct: 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.324 0.140 0.420 Gapped Lambda K H 0.267 0.0780 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,473,429 Number of extensions: 243328 Number of successful extensions: 575 Number of sequences better than 10.0: 1 Number of HSP's gapped: 556 Number of HSP's successfully gapped: 30 Length of query: 364 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 269 Effective length of database: 4,210,882 Effective search space: 1132727258 Effective search space used: 1132727258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.0 bits)