RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
(364 letters)
>gnl|CDD|30466 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism].
Length = 146
Score = 179 bits (455), Expect = 1e-45
Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63
S D R+M AL + G TS NPSV C+IVKDG ++G G G PHAEV AL A
Sbjct: 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMA 62
Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GE ARGATAYVTLEPCSHYGR+PPCA +I+ G+ RVVV + DP+ V+G GL L G
Sbjct: 63 GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAG 122
Query: 124 IIVD-RMMESEGKIFLHAYLTRQ 145
I V+ ++E E + +L R
Sbjct: 123 IEVEVGILEEEAEKLNEGFLKRM 145
>gnl|CDD|32168 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis
[Coenzyme metabolism].
Length = 218
Score = 167 bits (425), Expect = 3e-42
Identities = 86/214 (40%), Positives = 120/214 (56%), Gaps = 8/214 (3%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R +TLK+A+S D I A S ITG ++ VH LRA+SDAILVG GTVLAD+P L
Sbjct: 2 GRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSL 61
Query: 208 TCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
T RL G +E +P+R+ILD +L LDS++ +T AP I+VT + L ++ +
Sbjct: 62 TVRLPEGGEERNPVRVILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRE-LKEAGVE 120
Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+I DL LL L RG+ S+LVEGGA + SF+ + LVD ++LY + ++G
Sbjct: 121 VILLPDGRVDLAALLEELAERGINSVLVEGGATLNGSFLEAGLVDELLLYIAPKILGGSA 180
Query: 325 IPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354
G+L +R + G DV LEY
Sbjct: 181 RTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEY 214
>gnl|CDD|29827 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific
deaminase. Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine deaminase)
catalyzes the deamination of
2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone
5'-phosphate, which is an intermediate step in the
biosynthesis of riboflavin.The ribG gene of Bacillus
subtilis and the ribD gene of E. coli are bifunctional
and contain this deaminase domain and a reductase domain
which catalyzes the subsequent reduction of the ribosyl
side chain..
Length = 115
Score = 142 bits (359), Expect = 2e-34
Identities = 63/115 (54%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68
M AL + GLTS NP V C+IV D G ++G G G PHAEV AL AGE+ AR
Sbjct: 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLAR 60
Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
GAT YVTLEPCSH+G++PPC IIE GI+RVVV V DP+ V+G+G + L G
Sbjct: 61 GATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115
>gnl|CDD|145176 pfam01872, RibD_C, RibD C-terminal domain. The function of this
domain is not known, but it is thought to be involved in
riboflavin biosynthesis. This domain is found in the C
terminus of RibD/RibG, in combination with pfam00383, as
well as in isolation in some archaebacterial proteins.
This family appears to be related to pfam00186.
Length = 196
Score = 128 bits (324), Expect = 2e-30
Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 11/204 (5%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
++ LK A+S D I AG S ITG ++ VH LRA++DAILVG GTV AD+P LT R
Sbjct: 2 YVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTVR 61
Query: 211 L--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268
E P R+++D ++ LD++++ ++ TE D + +
Sbjct: 62 WVKGRAAERQPPRVVVDSTLRVPLDARVLNDD-APTLVATTEPADKEKVEKLKVLRV--- 117
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
DLK+LL L RG+ SLLVEGGA +A S + + LVD + LY + ++G GG
Sbjct: 118 -----DLKELLRELKERGIRSLLVEGGATLAGSLLRAGLVDELRLYIAPKLLGGGGRTLF 172
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCL 352
EG+L V + G+ V L
Sbjct: 173 GGEGFLALKLKLVSSEAIGNGVVL 196
>gnl|CDD|144101 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase
zinc-binding region.
Length = 104
Score = 81.2 bits (201), Expect = 4e-16
Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV----TAYGGCPHAEVQ 58
+D FM AL + +N V +IVK DG +I G Y HAE
Sbjct: 1 MEWDEYFMRLALE-AAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERN 59
Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
A+ A G + GAT YVTLEPC C Q IIE GI++VV
Sbjct: 60 AIRNAGRLGEGIKLEGATLYVTLEPCGM------CRQAIIESGIKKVVF 102
>gnl|CDD|30935 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport
and metabolism / Translation, ribosomal structure and
biogenesis].
Length = 152
Score = 63.0 bits (153), Expect = 1e-10
Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCP--HAEVQ 58
+S D FM AL+ ++ G P A ++ DG +I RG P HAE+
Sbjct: 4 LSEKDEDFMREALKEAKK-AGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEIL 62
Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
A+ A E T YVTLEPC P CA II I RVV DP G
Sbjct: 63 AIRAAAETLGNYRLKDCTLYVTLEPC------PMCAGAIIWARIDRVVYGASDPKTGAIG 116
Query: 114 RGLQWLSQKG 123
L L
Sbjct: 117 SLLDILKDPR 126
>gnl|CDD|29825 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate
deaminase zinc-binding region. The family contains
cytidine deaminases, nucleoside deaminases,
deoxycytidylate deaminases and riboflavin deaminases.
Also included are the apoBec family of mRNA editing
enzymes. All members are Zn dependent. The zinc ion in
the active site plays a central role in the proposed
catalytic mechanism, activating a water molecule to form
a hydroxide ion that performs a nucleophilic attack on
the substrate..
Length = 96
Score = 61.6 bits (149), Expect = 4e-10
Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV-ACLIV-KDGIVIGRG----VTAYGGCPHAEVQ 58
+ A + A +N V ACL+ KDG +GRG AY C HAE
Sbjct: 4 ALKAADLGYA----------KESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERT 53
Query: 59 ALEEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
AL AG E +G YV L PC CAQ IIE GI+ V+V +
Sbjct: 54 ALFNAGSEGDTKGQMLYVALSPCGA------CAQLIIELGIKDVIVVLT 96
>gnl|CDD|29829 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase
domain. Deoxycytidylate deaminase catalyzes the
deamination of dCMP to dUMP, providing the nucleotide
substrate for thymidylate synthase. The enzyme binds
Zn++, which is required for catalytic activity. The
activity of the enzyme is allosterically regulated by
the ratio of dCTP to dTTP not only in eukaryotic cells
but also in T-even phage-infected Escherichia coli, with
dCTP acting as an activator and dTTP as an inhibitor..
Length = 131
Score = 56.1 bits (135), Expect = 2e-08
Identities = 42/135 (31%), Positives = 51/135 (37%), Gaps = 47/135 (34%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPS--VACLIVKDGIVIGRGVTAYGGCP----------- 53
D FM+ A L ST P V +IVKD +I T Y G P
Sbjct: 1 DEYFMAIAR-----LAALRSTCPRRQVGAVIVKDKRIIS---TGYNGSPSGLPHCAEVGC 52
Query: 54 -----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFII 93
HAE A+ +A G GAT YVTL PC CA+ II
Sbjct: 53 ERDDLPSGEDQKCCRTVHAEQNAILQAARHGVSLEGATLYVTLFPCIE------CAKLII 106
Query: 94 ECGIRRVVVCVDDPD 108
+ GI++VV D
Sbjct: 107 QAGIKKVVYAEPYDD 121
>gnl|CDD|32314 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and
metabolism].
Length = 164
Score = 56.1 bits (135), Expect = 2e-08
Identities = 44/154 (28%), Positives = 59/154 (38%), Gaps = 38/154 (24%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY---------GGCP- 53
S +D FM+ A + T V +IVKDG +I G GC
Sbjct: 6 SMWDEYFMAIAELVALRS---TCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLR 62
Query: 54 ----------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94
HAE A+ +A G GAT YVT PCS CA+ II+
Sbjct: 63 DKVVFVTTCGHCCRTLHAEQNAILQAARHGVGLEGATLYVTHFPCS------NCAKLIIQ 116
Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128
GI+ VV P V+ + L + G+ V +
Sbjct: 117 AGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQ 150
>gnl|CDD|29828 cd01285, nucleoside_deaminase, Nucleoside deaminases include
adenosine, guanine and cytosine deaminases. These
enzymes are Zn dependent and catalyze the deamination of
nucleosides. The zinc ion in the active site plays a
central role in the proposed catalytic mechanism,
activating a water molecule to form a hydroxide ion that
performs a nucleophilic attack on the substrate. The
functional enzyme is a homodimer. Cytosine deaminase
catalyzes the deamination of cytosine to uracil and
ammonia and is a member of the pyrimidine salvage
pathway. Cytosine deaminase is found in bacteria and
fungi but is not present in mammals; for this reason,
the enzyme is currently of interest for antimicrobial
drug design and gene therapy applications against
tumors. Some members of this family are tRNA-specific
adenosine deaminases that generate inosine at the first
position of their anticodon (position 34) of specific
tRNAs; this modification is thought to enlarge the codon
recognition capacity during protein synthesis. Other
members of the family are guanine deaminases which
deaminate guanine to xanthine as part of the utilization
of guanine as a nitrogen source..
Length = 109
Score = 53.0 bits (127), Expect = 1e-07
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV--TAYGGCP--HAEVQALEEAGE 65
M A+ +R L +IV DG VI RG G P HAE+ A+ A
Sbjct: 1 MRLAIELAR--KALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58
Query: 66 EAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
G T Y TLEPC P CA ++ I+RVV DP + G
Sbjct: 59 RLGSYLLSGCTLYTTLEPC------PMCAGALLWARIKRVVYGASDPKLGGIG 105
>gnl|CDD|36236 KOG1018, KOG1018, KOG1018, Cytosine deaminase FCY1 and related
enzymes [Nucleotide transport and metabolism].
Length = 169
Score = 44.6 bits (105), Expect = 5e-05
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAE 56
+S D FM A+ + V ++V DG V+ G HAE
Sbjct: 6 ELSDHDIAFMVEAVEEA-KKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAE 64
Query: 57 VQALEEAGEEAR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
V A+ E + T YVT EPC P CA + + G++RVV
Sbjct: 65 VIAIREEEVMCKSLRTIDLSETTLYVTCEPC------PMCAGALAQSGVKRVVF 112
>gnl|CDD|38337 KOG3127, KOG3127, KOG3127, Deoxycytidylate deaminase [Nucleotide
transport and metabolism].
Length = 230
Score = 42.7 bits (100), Expect = 1e-04
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 39/125 (31%)
Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTA------YGGCP-- 53
S+D FM+ A + S +P+ AC++ ++ ++G G P
Sbjct: 65 SWDDYFMAIAFLSA-----KRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWC 119
Query: 54 ----------------HAEVQALEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECG 96
HAE A+ G E G + YVTL PC+ CA+ II+ G
Sbjct: 120 KAALSTNLDLKYCYVVHAEENAILNKGRERVGGCSLYVTLCPCNE------CAKLIIQAG 173
Query: 97 IRRVV 101
I+ V
Sbjct: 174 IKEVY 178
>gnl|CDD|30611 COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].
Length = 167
Score = 34.9 bits (80), Expect = 0.039
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
+++ L +L+ + + GG + F+ + L D +IL +++GEG
Sbjct: 82 SIEEALLLLLKEEGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEG 131
>gnl|CDD|177068 CHL00147, rpl4, ribosomal protein L4; Validated.
Length = 215
Score = 29.2 bits (66), Expect = 1.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINIIYCDCRDLKKLL 279
I L ++LD KI +IIV E + L L+ R KN+ +I D ++K LL
Sbjct: 145 INLLKKLNINLDQKI--------LIIVPEKTEN-LYLSTRNLKNVELISADTLNIKSLL 194
>gnl|CDD|36316 KOG1100, KOG1100, KOG1100, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 207
Score = 28.4 bits (63), Expect = 3.0
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
A V L PC H C + + C I R
Sbjct: 167 REATVLLLPCRHLCLCGICDESLRICPICRSPK 199
>gnl|CDD|31309 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase
subunits [DNA replication, recombination, and repair].
Length = 767
Score = 28.4 bits (62), Expect = 3.6
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 90 QFIIECGIRRVVVCVDD-----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144
+ E V V VD+ + G + +Q +I + E+ + +
Sbjct: 621 SKLNELEAEIVKVIVDELLKDGLEENDIGVISPYRAQVSLIRRLLNEAGKGVEVGTVDGF 680
Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204
Q ++ I L + S D+ + G N V L RA+ I+VG + L D
Sbjct: 681 QGREKDVIILSLVRSNDDKGEIGFLG-----DPRRLN-VALTRAKRKLIVVGSSSTLESD 734
Query: 205 PELTCRLNGLQE 216
P +N L+
Sbjct: 735 PLYKRLINDLKR 746
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 27.8 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSF-INSRLVDSIILYRSQIVIGEGGIPSP 328
LT+L G V +L+EG AV I + ++V+ G I SP
Sbjct: 216 PNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSP 268
>gnl|CDD|176146 cd08457, PBP2_OccR, The C-terminal substrate-domain of LysR-type
transcriptional regulator, OccR, involved in the
catabolism of octopine, contains the type 2 periplasmic
binding fold. This CD includes the C-terminal
substrate-domain of LysR-type transcriptional regulator
OccR, which is involved in the catabolism of octopine.
Opines are low molecular weight compounds found in plant
crown gall tumors produced by the parasitic bacterium
Agrobacterium. There are at least 30 different opines
identified so far. Opines are utilized by
tumor-colonizing bacteria as a source of carbon,
nitrogen, and energy. In Agrobacterium tumefaciens,
OccR protein activates the occQ operon of the Ti plasmid
in response to octopine. This operon encodes proteins
required for the uptake and catabolism of octopine, an
arginine derivative. The occ operon also encodes the
TraR protein, which is a quorum-sensing transcriptional
regulator of the Ti plasmid tra regulon. This
substrate-binding domain shows significant homology to
the type 2 periplasmic binding proteins (PBP2), which
are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 196
Score = 27.8 bits (62), Expect = 4.7
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI 42
+ AL R +G+ +P+ A + DGIVI
Sbjct: 124 RRPIIEVNLSHTALSLVREGLGIAIIDPATAIGLPLDGIVI 164
>gnl|CDD|29677 cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in
acetogenic and methanogenic organisms and is responsible
for the synthesis and breakdown of acetyl-CoA,
respectively. CODH has two types of metal clusters, a
cubane [Fe4-S4] center (B-cluster) similar to that of
hybrid cluster protein (HCP) and a Ni-Fe-S center
(C-cluster) where carbon monoxide oxidation occurs.
Bifunctional CODH forms a heterotetramer with acetyl-CoA
synthase (ACS) consisting of two CODH and two ACS
subunits while monofunctional CODH forms a homodimer.
Bifunctional CODH reduces carbon dioxide to carbon
monoxide and ACS then synthesizes acetyl-CoA from carbon
monoxide, CoA, and a methyl group donated by another
protein (CoFeSP), while monofunctional CODH oxidizes
carbon monoxide to carbon dioxide. CODH and ACS each
have a metal cluster referred to as the C- and
A-clusters, respectively..
Length = 613
Score = 27.5 bits (61), Expect = 5.3
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 34 LIVKDGIVIGRGVTAYGGCPHAEV---QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90
LI ++ +V+ G A G A + +A E AG+ + + + P H G ++
Sbjct: 452 LIKRNVLVLATGCGA-GALAKAGLMDPEAAELAGDGLKAVCKALGIPPVLHMGSCVDNSR 510
Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ + VD PD+ + +W+ +K +
Sbjct: 511 IVDLATALANELGVDIPDLPLVASAPEWMEEKAVA 545
>gnl|CDD|37174 KOG1963, KOG1963, KOG1963, WD40 repeat protein [General function
prediction only].
Length = 792
Score = 27.7 bits (61), Expect = 5.9
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
++G++V +E+ K FL + L I VS D+ +
Sbjct: 271 REGVLVLWQLETGKKQFL--------PRLGSPILHIVVSPDSDLYSLVLED--------- 313
Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214
NQ+HL++A I I + P R L
Sbjct: 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,473,429
Number of extensions: 243328
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 30
Length of query: 364
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 269
Effective length of database: 4,210,882
Effective search space: 1132727258
Effective search space used: 1132727258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)