RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >gnl|CDD|161819 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. Length = 344 Score = 271 bits (695), Expect = 2e-73 Identities = 140/348 (40%), Positives = 199/348 (57%), Gaps = 11/348 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL ++ G T NP V C+IVK+G ++G G G PHAEV AL +AGE A+GA Sbjct: 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH GR+PPCA+ IIE GI++VVV + DP+ V+GRG + L Q GI V + Sbjct: 61 TAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + +L R ++ LK+A S D I A S IT ++ LRAQ Sbjct: 121 LKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 SDAILVG GTV AD+P LT RL+ E P+R++LD ++ +K+I +AP I T Sbjct: 181 SDAILVGGGTVKADNPALTARLDEATEQ-PLRVVLDTQLRIPEFAKLIPQ--IAPTWIFT 237 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 D L + +NI + +++++T L RG+ S+LVEGG + SF++ LVD Sbjct: 238 TARDKKKRLEAFE--VNIFPLEKVTIREVMTQLGKRGINSVLVEGGPNLLGSFLDEGLVD 295 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +I+Y + ++G P E +K NF + + G D+ L Sbjct: 296 ELIIYIAPKLLGGTHAPGLCSEPGFQKMADALNFKFLEINQIGPDILL 343 >gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional. Length = 367 Score = 220 bits (563), Expect = 4e-58 Identities = 133/369 (36%), Positives = 191/369 (51%), Gaps = 32/369 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ V L + N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRR 343 VE G +A + + + LVD +I+Y + ++G G LEK F +R Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFSEIR- 354 Query: 344 DYFGSDVCL 352 + G DVCL Sbjct: 355 -HVGPDVCL 362 >gnl|CDD|178404 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase. Length = 380 Score = 167 bits (424), Expect = 5e-42 Identities = 92/296 (31%), Positives = 159/296 (53%), Gaps = 13/296 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +M + +R +G TS NP V C+IVKDG ++G G G PHAEV AL +AG+ Sbjct: 32 DSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDAGDL 91 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ ++RVVV + DP+ V+ +G++ L GI V Sbjct: 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEV 151 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184 +E E + A++ R + + +TL+ ++S + ++ G G+ G+ S+ Sbjct: 152 TVGVEEELCRKLNEAFIHRMLTGKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQ---- 207 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 L + DA+++ + DP + G ++ P+RII+ L ++ A Sbjct: 208 -LLQEYDAVILS-SALADADPLPLSQEAGAKQ--PLRIIIARSESSPLQIPSLREESAAK 263 Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V+++ D A R+K + ++ + +L +L + RG+ S+L++ V Sbjct: 264 VLVLA--DKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQRGLCSVLLDLRGNVG 317 >gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain. Length = 216 Score = 137 bits (348), Expect = 3e-33 Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 11/216 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R ++ LK A+S D I A S IT ++ VH LRAQSDAILVG GTVLADDP L Sbjct: 1 GRPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRL 60 Query: 208 TCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNI 265 T R L E +P+R++LD ++ ++++ AP + T D + Sbjct: 61 TVRWVELDELRNPVRVVLDSQLRVPPTARLLNDD--APTWVATTEPADEEKVKELEDFGV 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ + + DLKKL+ IL G+ S++VEGG + S + LVD +I+Y + ++G Sbjct: 119 EVLVLETKRVDLKKLMEILYEEGINSVMVEGGGTLNGSLLKEGLVDELIVYIAPKLLGGR 178 Query: 324 GIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 P+ ++ +K + G D+ L Sbjct: 179 DAPTLVDGEGFQKMADAPNLELKEIYQIGEDIVLTA 214 >gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated. Length = 217 Score = 119 bits (300), Expect = 1e-27 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 8/193 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + A+S D + I+G ++VH LRA+ DA++VGIGTVLADDP LT Sbjct: 2 RPYVIVNAAMSADGKLATKT-RYSRISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLT 60 Query: 209 -CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNIN 266 R + +P+R+++D + D++I+ A I+ P + KK Sbjct: 61 VHRYAAGKPENPIRVVVDSSARTPPDARILDGP--AKTIVAVSEAAPSEKVEELEKKGAE 118 Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +I DL LL L RG+ L+VEGG + S LVD + + +IG Sbjct: 119 VIVAGGERVDLPDLLEDLYERGIKRLMVEGGGTLIWSMFKEGLVDEVRVTVGPKIIGGKD 178 Query: 325 IPSPLE-EGYLEK 336 P+ + EG++E+ Sbjct: 179 APTLADGEGFIEE 191 >gnl|CDD|130572 TIGR01508, rib_reduct_arch, 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria. Length = 210 Score = 103 bits (259), Expect = 7e-23 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 7/180 (3%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ + +A+S D + I+ +VH +RA+ DAI+VGIGTVLADDP LT + Sbjct: 2 YVIVNVAMSLDGKLATIN-RDSRISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVK 60 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIY 269 + +P+R+++D ++ L+++I+ A II T D+P + K + ++ Sbjct: 61 -KIKSDRNPVRVVVDSKLRVPLNARILNKD--AKTIIATSEDEPEEKVEELEDKGVEVVK 117 Query: 270 C--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 DLKKLL IL +GV L+VEGG + S LVD I +Y + + G P+ Sbjct: 118 FGEGRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLFKENLVDEISVYIAPKIFGGRDAPT 177 >gnl|CDD|173182 PRK14719, PRK14719, bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional. Length = 360 Score = 77.7 bits (191), Expect = 5e-15 Identities = 64/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%) Query: 138 LHAYLTRQVEKRSH---ITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLR 187 L+ Y++R++ S I L +S +GM G + I+G +VH +R Sbjct: 120 LYPYISRRININSDLSDIMLPYVISN---VGMTLDGKLATIENDSRISGENDLKRVHEIR 176 Query: 188 AQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALL 242 DAI+VGIGTVL DDP LT ++N + +P+RI++D + K+ L+++++ KT + Sbjct: 177 KDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLNARVLNKDAKTVIA 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I E ++ + L ++ I ++ + DL+K++ + G+ +L+EGG + Sbjct: 237 TTTPISDEKEEKIRKL--KEMGITVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY--LEKNFMCVRRDYFGSD--VCLEYI 355 L++ + +Y + V G P+ ++ EG+ +E+ ++Y+ D + LEY Sbjct: 295 GMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYR 354 >gnl|CDD|184482 PRK14059, PRK14059, hypothetical protein; Provisional. Length = 251 Score = 47.7 bits (114), Expect = 4e-06 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 26/144 (18%) Query: 185 LLRAQSDAILVGIGTV---------LADDPELTCRLNGLQEHSPMRII-----LDPHFKL 230 LLRA +D ++VG GTV L+ + G E P+ ++ LDP +L Sbjct: 65 LLRALADVVVVGAGTVRAENYGGVRLSAAARQQRQARGQAEVPPIAVVSRSGDLDPDSRL 124 Query: 231 SLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR--DLKKLLTILVGR 285 ++++ P +++T LA + +++ DL + L R Sbjct: 125 FTETEV-------PPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR 177 Query: 286 GVTSLLVEGGAAVAHSFINSRLVD 309 G+ +L EGG + + + LVD Sbjct: 178 GLRRILCEGGPTLLGQLLAADLVD 201 >gnl|CDD|177417 PHA02588, cd, deoxycytidylate deaminase; Provisional. Length = 168 Score = 44.4 bits (105), Expect = 5e-05 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ A G GAT YVT PC P CA+ I + GI+++V C Sbjct: 83 HAELNAILFAARNGISIEGATMYVTASPC------PDCAKAIAQSGIKKLVYC 129 >gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional. Length = 172 Score = 43.6 bits (103), Expect = 8e-05 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 15/80 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + AT YVTLEPC Sbjct: 35 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCVM 94 Query: 82 YGRSPPCAQFIIECGIRRVV 101 CA ++ I R+V Sbjct: 95 ------CAGAMVHSRIGRLV 108 >gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. Length = 591 Score = 32.8 bits (75), Expect = 0.16 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 14/60 (23%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAIL-VGIGT-------VLADDPELTCRLNGLQE 216 G GCG I+ +SK + SDAI+ VG G VL D PELT ++G +E Sbjct: 233 GAFGCGKTVISQSLSK------YSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREE 286 >gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. Length = 151 Score = 30.6 bits (69), Expect = 0.60 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 28/98 (28%) Query: 25 TSTNPSVACLIVKDGIVIGRGVT---------AYGGC----------PHAEVQALEEA-- 63 T T SV IV+D +I G GC HAE+ AL + Sbjct: 21 TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 G GA YVT PC C + II+ GI+++ Sbjct: 81 FGVSTEGAEIYVTHFPCLQ------CTKSIIQAGIKKI 112 >gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional. Length = 695 Score = 28.8 bits (64), Expect = 2.3 Identities = 13/21 (61%), Positives = 15/21 (71%) Query: 187 RAQSDAILVGIGTVLADDPEL 207 RA +DA+LVG G ADD EL Sbjct: 231 RAGADAVLVGEGVATADDHEL 251 >gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase; Provisional. Length = 304 Score = 28.8 bits (65), Expect = 2.7 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 14/70 (20%) Query: 33 CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92 C++V D I G + V+AL+EAG A+ T H S P A+ + Sbjct: 204 CVLVDDMIDTGGTIAG-------AVRALKEAG--AKDVIIAAT-----HGVLSGPAAERL 249 Query: 93 IECGIRRVVV 102 CG R VVV Sbjct: 250 KNCGAREVVV 259 >gnl|CDD|161817 TIGR00321, dhys, deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two. Length = 301 Score = 28.5 bits (64), Expect = 2.7 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 L L F K ++ RD++KL I+ T +++ GG H +N+ L+ Y Sbjct: 189 LMLFFYTKKNSLRIDIVRDIRKLNDIVFNSERTGVIILGGGLPKHFILNACLLREGADYA 248 Query: 316 SQIVIG---EGGIP-SPLEEG 332 QI +G + +PLEE Sbjct: 249 VQITTDQPQDGSLSGAPLEEA 269 >gnl|CDD|162596 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research. Length = 375 Score = 28.5 bits (64), Expect = 2.9 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 19/69 (27%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-----------------AGEEAR 68 T+P + KDG + GRG T G A + AL+ EE+ Sbjct: 85 KTDPFKP--VEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESG 142 Query: 69 GATAYVTLE 77 A L+ Sbjct: 143 EAGTLYLLQ 151 >gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional. Length = 432 Score = 27.8 bits (62), Expect = 4.7 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 8/48 (16%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG-IGT 199 TL+I GMAG + GF K H LR AIL+ IGT Sbjct: 321 TLQIG-------GMAGTDAEGYGGFKDKVDRHYLRTFGSAILIALIGT 361 >gnl|CDD|148524 pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs. Length = 119 Score = 27.6 bits (62), Expect = 4.8 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%) Query: 102 VCVDDPD---VRVSGRGLQWLSQKGIIVDR 128 VC D D VR + L WL Q G+ V+R Sbjct: 17 VCGPDVDPELVRFAA-DLDWLKQNGVEVER 45 >gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional. Length = 2102 Score = 27.8 bits (62), Expect = 5.0 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 46 VTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 +TA GG P VQ LE ++A+ +A V C H Sbjct: 484 ITAAGGIPPL-VQLLETGSQKAKEDSATVLWNLCCH 518 >gnl|CDD|179809 PRK04286, PRK04286, hypothetical protein; Provisional. Length = 298 Score = 27.2 bits (61), Expect = 6.0 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 30 SVACLI-VKD-GIVIGRGVTA----YGGCPH-AEVQALEEAGEEARGATAYVTLEPCSHY 82 S+A + KD I+I GV+ YG PH E++ LEE E+ + SHY Sbjct: 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHY 74 >gnl|CDD|182697 PRK10749, PRK10749, lysophospholipase L2; Provisional. Length = 330 Score = 26.9 bits (60), Expect = 7.8 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-----FLHAYLTRQVEKRSH 151 DDP++RV G W+ + + ++++ G I L A R V+ R H Sbjct: 227 DDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLLLLQAEEERVVDNRMH 278 >gnl|CDD|177585 PHA03332, PHA03332, membrane glycoprotein; Provisional. Length = 1328 Score = 26.9 bits (59), Expect = 7.9 Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 CA + EC R +VC D VRVS GL Sbjct: 784 CAGNVTECTPRATLVCSMDVSVRVSIAGLL 813 >gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). Length = 851 Score = 27.0 bits (60), Expect = 8.0 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 6/24 (25%) Query: 320 IGEGGIPSPLEEGYLEKNFMCVRR 343 + +G +PS GY+ +RR Sbjct: 288 LADGVVPSNEGRGYV------LRR 305 >gnl|CDD|185453 PTZ00110, PTZ00110, helicase; Provisional. Length = 545 Score = 27.0 bits (60), Expect = 8.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 IA+S +MIG+A GS F+ VH + AQ Sbjct: 163 IALSGRDMIGIAETGSGKTLAFLLPAIVH-INAQ 195 >gnl|CDD|184437 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional. Length = 400 Score = 26.7 bits (60), Expect = 9.2 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGV 46 L T+P +VKDG + GRG Sbjct: 94 SLWETDPFKP--VVKDGKIYGRGS 115 >gnl|CDD|181688 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated. Length = 1165 Score = 26.7 bits (60), Expect = 9.2 Identities = 6/13 (46%), Positives = 11/13 (84%) Query: 96 GIRRVVVCVDDPD 108 G++R+VV D+P+ Sbjct: 564 GVKRIVVVTDEPE 576 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.140 0.420 Gapped Lambda K H 0.267 0.0758 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,052,634 Number of extensions: 401360 Number of successful extensions: 764 Number of sequences better than 10.0: 1 Number of HSP's gapped: 749 Number of HSP's successfully gapped: 32 Length of query: 364 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 269 Effective length of database: 3,941,713 Effective search space: 1060320797 Effective search space used: 1060320797 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.1 bits)