RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
(364 letters)
>d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii
[TaxId: 2190]}
Length = 219
Score = 107 bits (267), Expect = 2e-24
Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
EK+ +I + ++ D + I+ +VH +RA D I+VGIGTVL DDP
Sbjct: 1 EKKPYIISNVGMTLDGKLATIN-NDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59
Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
LT + P+RI++D ++ L+++++ + + ++ +++
Sbjct: 60 LTVHKIKSDRN-PVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMG 118
Query: 267 IIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
+ C DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + G
Sbjct: 119 VEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGG 178
Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
P+ ++ + G + LE+
Sbjct: 179 KEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 215
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 93.0 bits (230), Expect = 4e-20
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
+ LK A + D I S IT + +VH +R A+LVG GTVL D+P+LTCR
Sbjct: 2 FVALKYASTLDGKIADHRGDSKWITD-KLRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCR 60
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
L + +P+R+ILD LS + A VI+ TE+++
Sbjct: 61 LK--EGRNPVRVILDRKGVLSGKVFRVFEEN-ARVIVFTESEE------AEYPPHVEKAL 111
Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPSP 328
++ +L L R + S+LVEGG+ V F++ D + + S + G+G
Sbjct: 112 SDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDH--ADVVFGFYSTKIFGKGLDVFSGY 169
Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEY 354
L + + F V ++ S+ +E
Sbjct: 170 LSDVSVPPKFKVVNVEFSDSEFLVEM 195
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 85.3 bits (210), Expect = 7e-18
Identities = 57/140 (40%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+ +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG
Sbjct: 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAH 61
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI V
Sbjct: 62 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEV 121
Query: 127 DR-MMESEGKIFLHAYLTRQ 145
++ + + +L
Sbjct: 122 REGILADQAERLNEKFLHFM 141
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 83.8 bits (206), Expect = 2e-17
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A GE
Sbjct: 4 TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGE 63
Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ ++ + +
Sbjct: 64 DLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEV 123
Query: 126 VDRMMESEGKIFLHAYLTRQVEKR 149
++ ++E E K ++T +KR
Sbjct: 124 IEGVLEEEVKKLCEFFITYVTKKR 147
>d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 214
Score = 80.1 bits (196), Expect = 2e-16
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 8/211 (3%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
++TLK A S D I + S IT ++ R +ILVG+GTV AD+P LTCR
Sbjct: 2 YVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCR 61
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL--LAPVIIVTENDDPVLALAFRKKNINII 268
L + + I+ D + D+K+I + +++ L+ NI +
Sbjct: 62 LPNVTKQPVRVIL-DTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTL 120
Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328
+ + +L IL G+ S+ VEGG+AV SF+ II Y + +IG PS
Sbjct: 121 ETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSL 180
Query: 329 LEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
+ + G D+ L
Sbjct: 181 ISGEGFQSMKDVPLLQFTDITQIGRDIKLTA 211
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 64.5 bits (156), Expect = 1e-11
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
+M AL ++ V ++V + VIG G G A A +
Sbjct: 7 HEYWMRHALTLAK--RAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 64
Query: 67 ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
L + Y CA +I I RVV D +G + L G
Sbjct: 65 GGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG 124
Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEK 148
+ I + ++ E L + + ++
Sbjct: 125 MNHRVEITEGILADECAALLSDFFRMRRQE 154
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 64.0 bits (155), Expect = 2e-11
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 12/153 (7%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
F+ ALR ++ V +IVK+G +I + + A A +E
Sbjct: 3 KEYFLKVALREAK--RAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 60
Query: 67 ARGATAYVTLEPCSHYGR---SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK- 122
A LE C Y C+ ++ I +V+ D L +
Sbjct: 61 ACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPT 120
Query: 123 ---GIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
+ + E L + + R++I
Sbjct: 121 LNHRVKWEYYPLEEASELLSEFFKK---LRNNI 150
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 63.4 bits (153), Expect = 3e-11
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 16/125 (12%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62
F+ A+ + V P +IVKDG +I G T+ HAEV A+ +
Sbjct: 5 HETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 63
Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A + + Y + EPC P C I + V + D +G
Sbjct: 64 ACKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDS 117
Query: 118 WLSQK 122
++ ++
Sbjct: 118 FIYKE 122
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 62.9 bits (152), Expect = 4e-11
Identities = 33/127 (25%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
FM AL +R + ++V DG VI R A
Sbjct: 3 RTHFMELALVEAR--SAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 60
Query: 67 A---------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
A GA YVTLEPC CA I IRR+ DP G++
Sbjct: 61 ACEALGQERLPGADLYVTLEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVR 114
Query: 118 WLSQKGI 124
+ SQ
Sbjct: 115 FFSQPTC 121
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 60.3 bits (145), Expect = 3e-10
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 47 TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
+ HAE+ A+ A G GAT YVTL PC CA+ I + GI+++V C
Sbjct: 97 WSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYC 150
Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
+ L GI V + +
Sbjct: 151 ETYDKNK--PGWDDILRNAGIEVFNVPKKN 178
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 59.6 bits (143), Expect = 4e-10
Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 13/153 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65
D FM+ A+ ++ + +I KD VI R A A E
Sbjct: 4 DIYFMTLAIEEAK--KAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61
Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
+ G+ CA I+ I RVV DDP SG + L Q
Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN 121
Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSH 151
+ +++ L + R++
Sbjct: 122 FNHRAIVDKGVLKEACSTLLTTFFKN---LRAN 151
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 58.7 bits (141), Expect = 8e-10
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 21/152 (13%)
Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPHAEV 57
S +D + M A + G + ++ KDG V+GRG H E+
Sbjct: 6 SKWDQKGMDIAYEEAAL--GYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEI 63
Query: 58 QALEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
LE G T Y TL PC C II GI R VV +V
Sbjct: 64 STLENCGRLEGKVYKDTTLYTTLSPC------DMCTGAIIMYGIPRCVV---GENVNFKS 114
Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145
+G ++L +G V + + K + ++ +
Sbjct: 115 KGEKYLQTRGHEVVVVDDERCKKIMKQFIDER 146
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 57.8 bits (139), Expect = 1e-09
Identities = 33/169 (19%), Positives = 50/169 (29%), Gaps = 33/169 (19%)
Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV--TAYGGCP--HA 55
V + M L R + + A + + G++I G G C HA
Sbjct: 21 RVLAAPEARMGYVLELVR--ANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHA 78
Query: 56 EVQALEEA----------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105
E+ AL A + + EPC C +I G+R +V
Sbjct: 79 EILALSLAQAKLDTHDLSADGLPACELVTSAEPC------VMCFGAVIWSGVRSLVCAAR 132
Query: 106 DPDVRVSG--------RGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145
DV G + L +GI V ++ L Y
Sbjct: 133 SDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 181
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 28.5 bits (63), Expect = 0.86
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
G+ K ++ L DA+L+G + A D E R
Sbjct: 216 GYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALR 250
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 28.2 bits (62), Expect = 1.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
D I++GRG+ A G E + +AG EA
Sbjct: 220 VDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEA 258
>d1h5wa_ e.27.1.1 (A:) Upper collar protein gp10 (connector protein)
{Bacteriophage phi-29 [TaxId: 10756]}
Length = 268
Score = 28.3 bits (63), Expect = 1.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254
+ +N + +P+ I + + +LSL + APVI E D
Sbjct: 129 KEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDS 177
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 27.4 bits (60), Expect = 1.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
G + QV L ++ L+G + DD R
Sbjct: 216 GINTYAQVRELSHFANGFLIGSALMAHDDLHAAVR 250
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 27.3 bits (60), Expect = 2.1
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 14/159 (8%)
Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ-ALEEAGEEARGATAYVTLEP 78
G T T S+ + K I + E + + + G + +
Sbjct: 295 NFFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGG 354
Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
R + G+ V + R ++ + ++ D + E + F+
Sbjct: 355 ----LRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFV 410
Query: 139 HAY---------LTRQVEKRSHITLKIAVSQDNMIGMAG 168
+ + ++ I + S D G
Sbjct: 411 KRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHG 449
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed
(Calystegia sepium) [TaxId: 47519]}
Length = 207
Score = 26.7 bits (58), Expect = 3.2
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
+ I+ I + L P + C+ + +++ ++I D +L
Sbjct: 151 EGIMSAIQSALRVTPVVKCKSDAVEQ---VQICFDKTLQL 187
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.2 bits (57), Expect = 3.9
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
G ++ LR + +A+LVG + A++P
Sbjct: 210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPRRFLE 244
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 26.4 bits (58), Expect = 4.2
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYGGCPHAEVQALEEA 63
AA+ + S +PS L KDG + A+ AL
Sbjct: 38 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILL 97
Query: 64 ---GEEARGATAYVTLE----PCSHYGRSPPCAQFIIECG---IRRVVV 102
G + V E P + + + G I RV++
Sbjct: 98 NLKGYDYPDIQRAVLAEKADAPLIQWDA---TSATLKALGCHSIDRVLL 143
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 26.0 bits (56), Expect = 4.6
Identities = 4/47 (8%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196
+ + +A+ I + F + + + +++G
Sbjct: 1 AKVIFVLAMDVSGKI---ASSVESWSSFEDRKNFRKITTEIGNVVMG 44
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
{Acidaminococcus fermentans [TaxId: 905]}
Length = 317
Score = 25.3 bits (55), Expect = 7.5
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 36 VKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
V G I G P+A V + G
Sbjct: 14 VHSGDHIALGGFTTDRKPYAAVFEILRQG 42
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 221
Score = 25.2 bits (55), Expect = 8.8
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 35 IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83
+++DG+ +G G A QAL +E + +T +
Sbjct: 22 LIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDL 70
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 136
Score = 25.0 bits (54), Expect = 8.9
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
+ ++EC +R + DV
Sbjct: 66 TVISEKNEEEVLVECRVRFLSFMGVGKDVHTFA 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,399,958
Number of extensions: 67246
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 34
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)