BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
         (364 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL
Sbjct: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
           EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS
Sbjct: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120

Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180
           QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK
Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180

Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240
           NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA
Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240

Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300
           LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH
Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300

Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360
           SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC
Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360

Query: 361 LQEL 364
           LQEL
Sbjct: 361 LQEL 364


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 26.2 bits (56), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 40  IVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS--HY 82
           I IG+      G     V+  +E  ++A G T Y+  EP +  HY
Sbjct: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881


>gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 149

 Score = 24.3 bits (51), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 73  YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108
           YVTLEPC+       CA  I    IRR+     +P 
Sbjct: 77  YVTLEPCTM------CAAAISLARIRRLYYGASNPK 106


>gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 190

 Score = 23.9 bits (50), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISK-NQVHLLRAQSDAILVGIGTVLADDPEL 207
           + H T  + V +D ++ +AG G V +   + K N   + R     I+ G     AD   L
Sbjct: 12  KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTL 71

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238
             RL    E  P + +L    +L+ D ++ K
Sbjct: 72  LERLEKKLEQYPNQ-LLRSSVELAKDWRMDK 101


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,489
Number of Sequences: 1233
Number of extensions: 9949
Number of successful extensions: 28
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 364
length of database: 328,796
effective HSP length: 75
effective length of query: 289
effective length of database: 236,321
effective search space: 68296769
effective search space used: 68296769
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)