BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] (364 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL Sbjct: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS Sbjct: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 Query: 361 LQEL 364 LQEL Sbjct: 361 LQEL 364 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 40 IVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS--HY 82 I IG+ G V+ +E ++A G T Y+ EP + HY Sbjct: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881 >gi|255764464|ref|YP_003064771.2| Cytidine/deoxycytidylate deaminase, zinc-binding region [Candidatus Liberibacter asiaticus str. psy62] Length = 149 Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 YVTLEPC+ CA I IRR+ +P Sbjct: 77 YVTLEPCTM------CAAAISLARIRRLYYGASNPK 106 >gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISK-NQVHLLRAQSDAILVGIGTVLADDPEL 207 + H T + V +D ++ +AG G V + + K N + R I+ G AD L Sbjct: 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTL 71 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 RL E P + +L +L+ D ++ K Sbjct: 72 LERLEKKLEQYPNQ-LLRSSVELAKDWRMDK 101 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.140 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,489 Number of Sequences: 1233 Number of extensions: 9949 Number of successful extensions: 28 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 5 length of query: 364 length of database: 328,796 effective HSP length: 75 effective length of query: 289 effective length of database: 236,321 effective search space: 68296769 effective search space used: 68296769 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)