HHsearch alignment for GI: 254780349 and conserved domain: COG0076
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].
Probab=99.75 E-value=9e-16 Score=130.30 Aligned_cols=327 Identities=18% Similarity=0.184 Sum_probs=210.2
Q ss_pred HHHHHCHHHHHH-HHHHHH-HHHHCCCCCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 697858999999-999999-99838881043010-298999983051028865798887533600679999999999999
Q gi|254780349|r 13 SLIESDPDVFSL-IGQESC-RQNDEIQLIASENI-VSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAK 89 (433)
Q Consensus 13 ~l~~~Dpei~~~-i~~e~~-rq~~~l~LiASEN~-~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~ 89 (433)
T Consensus 39 p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~-~n-l~d~~~--~p~---a~~~E~~~v~~l~ 111 (460)
T COG0076 39 PLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALN-KN-LGDPDE--SPA---AAELEERVVNMLS 111 (460)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH-CC-CCCCCC--CCC---HHHHHHHHHHHHH
T ss_conf 7467899999986366554477865567635788867999999999873-47-998123--831---5888999999999
Q ss_pred HHCCC-CC-EECCCHHHHHHHHHHHHHHHCCC--------C------EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87188-63-01000016799999999831548--------7------488123344841114766543333322013665
Q gi|254780349|r 90 KLFNV-NF-VNVQSHSGSQMNQGVFLALMHPG--------D------SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNV 153 (433)
Q Consensus 90 ~lF~a-~~-anvqp~SG~~An~av~~ALl~pG--------D------~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~ 153 (433)
T Consensus 112 ~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii---~s~~aH~s~~Kaa~~lG~~~~~v~~-- 186 (460)
T COG0076 112 DLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIV---CSETAHFSFEKAARYLGLGLRRVPT-- 186 (460)
T ss_pred HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE---ECCCCCEEHHHHHHHHCCCCEEEEE--
T ss_conf 99579976606796170799999999999998766442023446887499---4574312099999981885237875--
Q ss_pred CCCCCCCCHHHHHHHHHHHCCC--EE-EEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHH-HHCCC----CCCC
Q ss_conf 8323565989999999860466--78-970552435363799998864179789918620124432-00012----3220
Q gi|254780349|r 154 RKEDGLLDMHEIESLAIEYNPK--LI-IVGGTAYSRVWDWERFRSIADSIGAYLMADISHISGLVV-GGQHP----SPVP 225 (433)
Q Consensus 154 d~~~~~ID~d~~~~~a~~~kPk--lI-i~G~S~y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa-~g~~~----~Pl~ 225 (433)
T Consensus 187 ~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA-~GG~~~pf~~~~~~~~f~l~ 265 (460)
T COG0076 187 VPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAA-FGGFLLPFLEPDGRWDFGLE 265 (460)
T ss_pred ECCCEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECC-CCCHHHHCCCCCCHHHCCCC
T ss_conf 24750568999999998746476499972688887778899999999976997898734-40021102474225351788
Q ss_pred CCCEEEECCCCCCCCCCC-EEEEECCCCHHHHCCHHHCHHHHH---------HHHHH-HHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 023567404565225674-489833620565016646543223---------44556-6689999999973564899999
Q gi|254780349|r 226 HCHIVTTTTHKSLRGPRG-GLIMTNHADLAKKINSAIFPGLQG---------GPFMH-SIAAKAVAFGEALSSEFRDYAK 294 (433)
Q Consensus 226 ~ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i~~avfPg~qg---------~~~~~-~iaa~aval~Ea~~~~f~~Ya~ 294 (433)
T Consensus 266 ~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~ 345 (460)
T COG0076 266 GVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLD 345 (460)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82089988642778888706999968898467761236677877866636885054189999999999967888999999
Q ss_pred HHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCC
Q ss_conf 99988899999986168-523345888981263166556767999998885671880378
Q gi|254780349|r 295 QIVLNSQALAKKLQFLG-FDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNS 353 (433)
Q Consensus 295 qvv~NA~~La~~L~~~G-~~vv~ggTd~H~vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~ 353 (433)
T Consensus 346 ~~~~~a~~la~~l~~~~~~e~~~~p-~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~~ 404 (460)
T COG0076 346 RTLELARYLAEELEKLGDFELVNEP-ELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQL 404 (460)
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCC
T ss_conf 9999999999998647882763388-6507999657643202314789986297552013