HHsearch alignment for GI: 254780349 and conserved domain: COG0403
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism].
Probab=98.74 E-value=3.8e-05 Score=56.34 Aligned_cols=253 Identities=14% Similarity=0.143 Sum_probs=150.8
Q ss_pred CCCCCHHHH--HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHCCCCCEECCCHHHHH-HHHHHHHHHH
Q ss_conf 010298999--9830510288657988875336006799999999--9999987188630100001679-9999999831
Q gi|254780349|r 42 ENIVSRAVL--EAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIA--IERAKKLFNVNFVNVQSHSGSQ-MNQGVFLALM 116 (433)
Q Consensus 42 EN~~S~~v~--~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la--~~~a~~lF~a~~anvqp~SG~~-An~av~~ALl 116 (433)
T Consensus 86 ~~~~P~vI~rnile~pewyTaYTP-------YQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r 158 (450)
T COG0403 86 DTYTPPVILRNILENPEWYTAYTP-------YQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKR 158 (450)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 871827888876438542236788-------8636665799999989999999858874450023167699999999987
Q ss_pred --C-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC-CC-CCCCHH
Q ss_conf --5-487488123344841114766543333322013665832356598999999986046678970552-43-536379
Q gi|254780349|r 117 --H-PGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTA-YS-RVWDWE 191 (433)
Q Consensus 117 --~-pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~-y~-~~~d~~ 191 (433)
T Consensus 159 ~~k~k~~~~~V~~~vhpqt~~Vl-~Tra~~~g~~i~~~~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~ 230 (450)
T COG0403 159 VTKKKRNKFLVPKDVHPQTLDVL-RTRAEGLGIEIEVVDAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLR 230 (450)
T ss_pred HHCCCCCEEEECCCCCHHHHHHH-HHHCCCCCEEEEEECCC------HHHHHHHC-CCCCEEEEEEECCCCCCCCCHHHH
T ss_conf 41476734996688687799999-86112576399995642------25566532-467737999976888773414099
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC-CCEEEECCC-----CCCCCCCCEEEEECCCCHHHHC--------
Q ss_conf 99988641797899186201244320001232200-235674045-----6522567448983362056501--------
Q gi|254780349|r 192 RFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH-CHIVTTTTH-----KSLRGPRGGLIMTNHADLAKKI-------- 257 (433)
Q Consensus 192 ~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~-ADvvt~sTH-----Ktl~GPrgGiI~~~~~e~~~~i-------- 257 (433)
T Consensus 231 ~l~~~~h~~~al~~v----~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~-~~~R~mPGRlVG~S 305 (450)
T COG0403 231 ALIEAAHSAGALVIV----AADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKD-EFKRQMPGRLVGVS 305 (450)
T ss_pred HHHHHHHHCCCEEEE----EECHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEHH-HHHHCCCCCEEEEE
T ss_conf 999998635977999----8263676455784103786697337604777678875632223758-67425998433046
Q ss_pred ----------------------CHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHH--HCCC
Q ss_conf ----------------------66465432234455666899999999735648-9999999988899999986--1685
Q gi|254780349|r 258 ----------------------NSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF-RDYAKQIVLNSQALAKKLQ--FLGF 312 (433)
Q Consensus 258 ----------------------~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f-~~Ya~qvv~NA~~La~~L~--~~G~ 312 (433)
T Consensus 306 ~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~h---Gp~GLk~iA~r~~~~a~~la~~L~~~~~g~ 382 (450)
T COG0403 306 VDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYH---GPQGLKEIAERIHRLAAYLAAGLKEIGAGV 382 (450)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 45899803201287788887640010155489999999999999986---968899999999999999999876458864
Q ss_pred CCCCC
Q ss_conf 23345
Q gi|254780349|r 313 DIVSG 317 (433)
Q Consensus 313 ~vv~g 317 (433)
T Consensus 383 ~~~~~ 387 (450)
T COG0403 383 ELVFD 387 (450)
T ss_pred EECCC
T ss_conf 75142