HHsearch alignment for GI: 254780349 and conserved domain: COG0520
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].
Probab=99.82 E-value=5.7e-17 Score=138.67 Aligned_cols=335 Identities=19% Similarity=0.220 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CEECCCHHHHHH-HHHHHHHH---HC
Q ss_conf 10298999983051028865798887533600679999999999999871886-301000016799-99999983---15
Q gi|254780349|r 43 NIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVN-FVNVQSHSGSQM-NQGVFLAL---MH 117 (433)
Q Consensus 43 N~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~-~anvqp~SG~~A-n~av~~AL---l~ 117 (433)
T Consensus 32 ~~~p~~V~~a~~~~~~~~~an~~r~~--~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~ 109 (405)
T COG0520 32 SQKPQAVLDAVAEYYRRYNANVHRGA--HTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLK 109 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 66788999999999997402457554--4127999999999999999981999877299959837999999997024106
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC--CCCCCCHHHH
Q ss_conf 48748812334484111476654333--3322013665832356598999999986046678970552--4353637999
Q gi|254780349|r 118 PGDSFMGLSLDSGGHLTHGSSVNMSG--KWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTA--YSRVWDWERF 193 (433)
Q Consensus 118 pGD~Il~~~l~~GGHlshg~~~~~~g--~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~--y~~~~d~~~l 193 (433)
T Consensus 110 ~gdeIv~s~~EH~sn~---~pw~~~~~~~Ga~v~~i~~~-~~g~~~~d~~~~-~i~~~Tklvais~vSn~tG~~~pv~~I 184 (405)
T COG0520 110 PGDEIVVSDLEHHSNI---VPWQELAKRTGAKVRVIPLD-DDGLLDLDALEK-LITPKTKLVALSHVSNVTGTVNPVKEI 184 (405)
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHHCCCEEEEEECC-CCCCCCHHHHHH-HCCCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 8998998046552008---99999998759689998418-999728899986-469994499996641675540409999
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCCCHHHHC-------------
Q ss_conf 988641797899186201244320001232200--23567404565225674-48983362056501-------------
Q gi|254780349|r 194 RSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHADLAKKI------------- 257 (433)
Q Consensus 194 ~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i------------- 257 (433)
T Consensus 185 ~~la~~~ga~v~VDaaq~~~h-----~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~-~~l~~l~P~~~gg~~~~~~ 258 (405)
T COG0520 185 AELAHEHGALVLVDAAQAAGH-----LPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRK-ELLEELEPFLGGGGMIEYV 258 (405)
T ss_pred HHHHHHCCCEEEEECCCCCCC-----CCCCHHHCCCCEEEECCCCCCCCCCCEEEEEECH-HHHHHCCCCCCCCCCEEEC
T ss_conf 999998499899977133475-----6688556189899976743257998529999866-5584378977788724401
Q ss_pred C--------HHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEECC
Q ss_conf 6--------64654322344556668999999997356489999999988899999986168-52334588898126316
Q gi|254780349|r 258 N--------SAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLG-FDIVSGGTDNHLMLVDL 328 (433)
Q Consensus 258 ~--------~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G-~~vv~ggTd~H~vlvdl 328 (433)
T Consensus 259 ~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF 338 (405)
T COG0520 259 SRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSF 338 (405)
T ss_pred CCCCCCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEE
T ss_conf 44555301564153155784378898699999999985799999999999999999985489849964663467746999
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEC---CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 65567679999988856718803---78998999988898512246667307999899999999999996
Q gi|254780349|r 329 RSKRMTGKRAESILGRVSITCNK---NSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQIL 395 (433)
Q Consensus 329 ~~~~~~G~~a~~~Le~~gI~~Nk---n~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L 395 (433)
T Consensus 339 ~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~-~~~~~~~~~iR~S~~~YNt----~edid~l~~aL~~~~ 403 (405)
T COG0520 339 NVKGIHPHDVATLLDEKGIAVRAGHHCAQPL-HRLLGVDATIRASLHLYNT----EEDVDRLLEALKKAL 403 (405)
T ss_pred EECCCCHHHHHHHHHHCCEEEEECCCCCHHH-HHHCCCCCCEEEEEECCCC----HHHHHHHHHHHHHHH
T ss_conf 9789598999999986786998256443267-8753777757999742599----999999999999874