HHsearch alignment for GI: 254780349 and conserved domain: KOG0259
>KOG0259 consensus.
Probab=97.82 E-value=0.0014 Score=45.55 Aligned_cols=295 Identities=19% Similarity=0.177 Sum_probs=150.4
Q ss_pred HHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHH---HHHHHCCCCCEECCCHHH-HHHHHHHHHHHHCCCC
Q ss_conf 89999830510288657--98887533600679999999999---999871886301000016-7999999998315487
Q gi|254780349|r 47 RAVLEAQGSILTNKYAE--GYPSKRYYGGCQYVDDIENIAIE---RAKKLFNVNFVNVQSHSG-SQMNQGVFLALMHPGD 120 (433)
Q Consensus 47 ~~v~~~l~S~l~nkyae--G~pg~ryy~G~~~~d~iE~la~~---~a~~lF~a~~anvqp~SG-~~An~av~~ALl~pGD 120 (433)
T Consensus 85 ~Av~~al~Sgk~N~Yaps~G~~~AR-----------~AVAeYl~~~l~~kl~a--~DV~ltsGC~qAIe~~i~~LA~p~a 151 (447)
T KOG0259 85 QAVVDALRSGKGNGYAPSVGILPAR-----------RAVAEYLNRDLPNKLTA--DDVVLTSGCSQAIELAISSLANPGA 151 (447)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHH-----------HHHHHHHHCCCCCCCCC--CCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 9999999638877768765648899-----------99999863189875674--7669955636999999997438998
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCEEEEE-----CCCCCCCCCHHHHH
Q ss_conf 4881233448411147665433333220136658323-56598999999986046678970-----55243536379999
Q gi|254780349|r 121 SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKED-GLLDMHEIESLAIEYNPKLIIVG-----GTAYSRVWDWERFR 194 (433)
Q Consensus 121 ~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPklIi~G-----~S~y~~~~d~~~l~ 194 (433)
T Consensus 152 NILlPrPGfp~Y~~~a-----~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H-L~kia 225 (447)
T KOG0259 152 NILLPRPGFPLYDTRA-----IYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH-LKKIA 225 (447)
T ss_pred CEECCCCCCCHHHHHH-----HHCCCEEEEECCCCCCCCEECHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH-HHHHH
T ss_conf 6654799984688766-----32584367632567656153168899764467069999679999865151999-99999
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC-C---CEE-EECCCCCC--CCCCCEEEEECCCC-HHH---HCCHHHCH
Q ss_conf 88641797899186201244320001232200-2---356-74045652--25674489833620-565---01664654
Q gi|254780349|r 195 SIADSIGAYLMADISHISGLVVGGQHPSPVPH-C---HIV-TTTTHKSL--RGPRGGLIMTNHAD-LAK---KINSAIFP 263 (433)
Q Consensus 195 eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~-A---Dvv-t~sTHKtl--~GPrgGiI~~~~~e-~~~---~i~~avfP 263 (433)
T Consensus 226 e~A~klgi~vIaDEV-Y~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q-~~~~ 303 (447)
T KOG0259 226 ETAKKLGIMVIADEV-YGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQ-GIKN 303 (447)
T ss_pred HHHHHHCCEEEEHHH-CCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH-HHHH
T ss_conf 999984976976111-23133179973001330565736861542356404773034689756665424418999-9999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHC-CCCCCCCCCC-CCEEEECC--C---CCCC
Q ss_conf 32234455666--89999999973564899999999-8889999998616-8523345888-98126316--6---5567
Q gi|254780349|r 264 GLQGGPFMHSI--AAKAVAFGEALSSEFRDYAKQIV-LNSQALAKKLQFL-GFDIVSGGTD-NHLMLVDL--R---SKRM 333 (433)
Q Consensus 264 g~qg~~~~~~i--aa~aval~Ea~~~~f~~Ya~qvv-~NA~~La~~L~~~-G~~vv~ggTd-~H~vlvdl--~---~~~~ 333 (433)
T Consensus 304 ~~~~~~~p~TiiQ~AlP~IL~kTp~-efF~k~~~~lk~na~l~y~~Lk~IP~l~cp-~kPeg~mylmv~l~~s~~~~~~d 381 (447)
T KOG0259 304 FLDIIPGPATIIQGALPDILEKTPE-EFFDKKLSFLKSNADLCYSRLKDIPCLTCP-VKPEGCMYLMVKLNLSLFPDIED 381 (447)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEECCCHHHHCCCCC
T ss_conf 9854599508598775889874839-999999999876279999998459876667-58875158985266654002245
Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6799999888567188037899899998889851224
Q gi|254780349|r 334 TGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLG 370 (433)
Q Consensus 334 ~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlG 370 (433)
T Consensus 382 D~dFc~kL~~Eesv~~----LPG~a--f~~~nw~Ri~ 412 (447)
T KOG0259 382 DVDFCQKLAREESVIC----LPGQA--FGLKNWLRIV 412 (447)
T ss_pred CHHHHHHHHHHCCEEE----ECCCC--CCCCCEEEEE
T ss_conf 0899999863142687----25120--3678848999