HHsearch alignment for GI: 254780349 and conserved domain: PRK03566
>PRK03566 consensus.
Probab=99.65 E-value=4e-13 Score=111.86 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=203.5
Q ss_pred HHCCCCCCCCCCC--CHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHH
Q ss_conf 8388810430102--9899998305102886579888753360067999999999999987188630100001679-999
Q gi|254780349|r 33 NDEIQLIASENIV--SRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQ-MNQ 109 (433)
Q Consensus 33 ~~~l~LiASEN~~--S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~-An~ 109 (433)
T Consensus 32 ~~~i~l~~NeNp~gp~~~v~~a~~~~~~~--~~~YPd~------~~~~----L-r~aiA~~~gv~~~~I~v~~Gs~e~i~ 98 (365)
T PRK03566 32 SDIVKLASNENPLGPSPKALEAIRAALSE--LHRYPDG------NGFE----L-KAALAEKLGVPPEQITLGNGSNDLLE 98 (365)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHH--CCCCCCC------CHHH----H-HHHHHHHHCCCHHHEEECCCHHHHHH
T ss_conf 88788218899989899999999998886--1669596------6899----9-99999997848667998778999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCC--CC
Q ss_conf 9999831548748812334484111476654333332201366583235659899999998604667897055243--53
Q gi|254780349|r 110 GVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYS--RV 187 (433)
Q Consensus 110 av~~ALl~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~y~--~~ 187 (433)
T Consensus 99 l~~~a~~~pGd~Vl~~~P~y~~Y~~---~~~~~g--~~~~~vp~~--~~~~dl~~l~~~i-~~~~klv~l~nPnNPTG~~ 170 (365)
T PRK03566 99 LLARAFLGPGDEIIYSQYAFAVYPL---ATQAVG--ARAVEVPAK--DYGHDLEAMLAAI-TPKTRLVFIANPNNPTGTF 170 (365)
T ss_pred HHHHHHCCCCCEEEECCCCHHHHHH---HHHHCC--CEEEEECCC--CCCCCHHHHHHHC-CCCCCEEEECCCCCCCCCC
T ss_conf 9999855899876766886689999---999819--748996176--7676958899863-8888689977999988773
Q ss_pred CCHHHHHHHHHHC--CCEEEECCCCHHHHHHHHCCCCCCCC----CC-EEEECCCCCC--CCCCCEEEEECCCCHHHHCC
Q ss_conf 6379999886417--97899186201244320001232200----23-5674045652--25674489833620565016
Q gi|254780349|r 188 WDWERFRSIADSI--GAYLMADISHISGLVVGGQHPSPVPH----CH-IVTTTTHKSL--RGPRGGLIMTNHADLAKKIN 258 (433)
Q Consensus 188 ~d~~~l~eIa~~~--ga~l~~D~aH~~GLIa~g~~~~Pl~~----AD-vvt~sTHKtl--~GPrgGiI~~~~~e~~~~i~ 258 (433)
T Consensus 171 ~~~~~l~~l~~~~~~~~~vV~DEaY-~ef~~~~~~~~~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~ia~~-~li~~l~ 248 (365)
T PRK03566 171 LSAAELEAFLAKVPPDVLVVLDEAY-TEYAAPEERPDSLAWLKKYPNLVVSRTFSKAYGLAGLRVGYAVSNP-EIADLLN 248 (365)
T ss_pred CCCHHHHHHHHHCCCCCEEEEECCH-HHHCCCCCCCCHHHHHHHCCCEEEEEECCHHCCCCCHHHEEEECCH-HHHHHHH
T ss_conf 5706589999754567449852457-7750477777788876413772598545452057573014101699-9999999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHH
Q ss_conf 64654322344556668999999997356489999999988899999986168523345888981263166556767999
Q gi|254780349|r 259 SAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRA 338 (433)
Q Consensus 259 ~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~G~~a 338 (433)
T Consensus 249 ~~~~p~~vn~--~aq~aa~a-aL~--~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ps--~~nF~l~~~~---~~~~~l 318 (365)
T PRK03566 249 RVRQPFNVNS--LALAAAVA-ALD--DDDFLAKSRELNRAGMQQLEAGFDALGLEYIPS--KGNFVTVDVG---RDAAAI 318 (365)
T ss_pred HHCCCCCCCH--HHHHHHHH-HHC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC--CCEEEEEECC---CCHHHH
T ss_conf 9618889779--99999999-958--999999999999989999999999787988789--9808999789---999999
Q ss_pred HHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9988856718803789989999888985122466673079998999999999999960
Q gi|254780349|r 339 ESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILD 396 (433)
Q Consensus 339 ~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~ 396 (433)
T Consensus 319 ~~~L~~~gV~Vr----p~~~f--gl~~~lRis~-------g~~een~~l~~aL~~il~ 363 (365)
T PRK03566 319 YQALLRQGVIVR----PVAGY--GMPNHLRVSI-------GLPEENARFLAALKKVLA 363 (365)
T ss_pred HHHHHHCCEEEE----ECCCC--CCCCEEEEEE-------CCHHHHHHHHHHHHHHHC
T ss_conf 999997791898----68989--9989799995-------899999999999999876