HHsearch alignment for GI: 254780349 and conserved domain: TIGR00461

>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=98.07  E-value=0.00021  Score=51.22  Aligned_cols=318  Identities=21%  Similarity=0.241  Sum_probs=217.2

Q ss_pred             HHHHHCHHHHH---HHHHHHHH-----HHHCCCCCCCCCCCCHHHHHHHHCCCC---------------CCCCCCCCCCC
Q ss_conf             69785899999---99999999-----983888104301029899998305102---------------88657988875
Q gi|254780349|r   13 SLIESDPDVFS---LIGQESCR-----QNDEIQLIASENIVSRAVLEAQGSILT---------------NKYAEGYPSKR   69 (433)
Q Consensus        13 ~l~~~Dpei~~---~i~~e~~r-----q~~~l~LiASEN~~S~~v~~~l~S~l~---------------nkyaeG~pg~r   69 (433)
T Consensus       452 ~~~~L~~dv~~dsrSfp~~~~R~deiL~~~VFn~yHSETemlRYlH~LeskDLaLn~sMIPLGSCTMKLNataEMmPiTW  531 (965)
T TIGR00461       452 SSEELSEDVSNDSRSFPAELLRDDEILRDEVFNRYHSETEMLRYLHRLESKDLALNNSMIPLGSCTMKLNATAEMMPITW  531 (965)
T ss_pred             CHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf             87777787620013467543351144304000255746899998764201347675146744420322301100267767


Q ss_pred             CC----------CCCH-HHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHH----HCCCCE---EEECCCCCCC
Q ss_conf             33----------6006-7999999999999987188630100001679999999983----154874---8812334484
Q gi|254780349|r   70 YY----------GGCQ-YVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLAL----MHPGDS---FMGLSLDSGG  131 (433)
Q Consensus        70 yy----------~G~~-~~d~iE~la~~~a~~lF~a~~anvqp~SG~~An~av~~AL----l~pGD~---Il~~~l~~GG  131 (433)
T Consensus       532 PeF~~iHPF~P~~Q~eGY~~lia~L-e~wL~~iTGfDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRniCLIP~SA--  608 (965)
T TIGR00461       532 PEFSEIHPFAPSEQVEGYQELIAQL-EKWLVEITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRNICLIPVSA--  608 (965)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC--
T ss_conf             0105658788850225899999999-8875210576624417888844667889999998760588987445307776--


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE--EEE-ECCCCC-CCCCHHHHHHHHHHCCCEEEE
Q ss_conf             11147-6654333332201366583235659899999998604667--897-055243-536379999886417978991
Q gi|254780349|r  132 HLTHG-SSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKL--IIV-GGTAYS-RVWDWERFRSIADSIGAYLMA  206 (433)
Q Consensus       132 Hlshg-~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkl--Ii~-G~S~y~-~~~d~~~l~eIa~~~ga~l~~  206 (433)
T Consensus       609 ---HGTNPASA~MaGm~VVpV~Cd~-~GniDl~DL~~KAEq~gd~Laa~MvTYPSThGvfE~tI~~~~diVH~FGGqVYl  684 (965)
T TIGR00461       609 ---HGTNPASAAMAGMQVVPVKCDK-DGNIDLVDLKAKAEQYGDELAAVMVTYPSTHGVFEETIREVCDIVHRFGGQVYL  684 (965)
T ss_pred             ---CCCCHHHHHHCCCEEEEEEECC-CCCEEHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCEEEEEECCCCEEEE
T ss_conf             ---7887289961698689876569-995007777888875066525677505877664322210013114426884752


Q ss_pred             CCCCHHHHHHHHCCCCCCCC-CCEEEECCCCCCCCCCC------EEEEECC--------CC---------HHHHCCHHHC
Q ss_conf             86201244320001232200-23567404565225674------4898336--------20---------5650166465
Q gi|254780349|r  207 DISHISGLVVGGQHPSPVPH-CHIVTTTTHKSLRGPRG------GLIMTNH--------AD---------LAKKINSAIF  262 (433)
Q Consensus       207 D~aH~~GLIa~g~~~~Pl~~-ADvvt~sTHKtl~GPrg------GiI~~~~--------~e---------~~~~i~~avf  262 (433)
T Consensus       685 DGANMNAQV--G-ltsPgd~GADVcHLNLHKTFcIPHGGGGPgmgPIgVKsHL~pflP~~~~~s~~~~~g~~~sig----  757 (965)
T TIGR00461       685 DGANMNAQV--G-LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKTDVVSVVELEGESKSIG----  757 (965)
T ss_pred             CCCCCCCCC--C-CCCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCC----
T ss_conf             456642233--6-678611056343430544201268678787752224640224588876000156531232435----


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCC---CCC---CCEEEECCCC---
Q ss_conf             432234--4556668999999997356489999999-988899999986168523345---888---9812631665---
Q gi|254780349|r  263 PGLQGG--PFMHSIAAKAVAFGEALSSEFRDYAKQI-VLNSQALAKKLQFLGFDIVSG---GTD---NHLMLVDLRS---  330 (433)
Q Consensus       263 Pg~qg~--~~~~~iaa~aval~Ea~~~~f~~Ya~qv-v~NA~~La~~L~~~G~~vv~g---gTd---~H~vlvdl~~---  330 (433)
T Consensus       758 --~vSaAPyGsAsiLpISw~YI~MMG~eGL~kas~vAiLnaNYma~RL~d~-ypiLf~nemg~~~~vAHEcIlDlRplK~  834 (965)
T TIGR00461       758 --AVSAAPYGSASILPISWMYIKMMGAEGLKKASEVAILNANYMAKRLKDY-YPILFVNEMGRDKRVAHECILDLRPLKK  834 (965)
T ss_pred             --CEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCEEEEEEECHHHHHH
T ss_conf             --4523654541466889999985220135035577756266899887610-7654431157888313567635255456


Q ss_pred             C-CCCHHHHHHHHHHCCE
Q ss_conf             5-6767999998885671
Q gi|254780349|r  331 K-RMTGKRAESILGRVSI  347 (433)
Q Consensus       331 ~-~~~G~~a~~~Le~~gI  347 (433)
T Consensus       835 ~~gie~~DvAKRL~DyGF  852 (965)
T TIGR00461       835 KAGIEALDVAKRLIDYGF  852 (965)
T ss_pred             HHCCCHHHHHHHHHCCCC
T ss_conf             517654456766411577