HHsearch alignment for GI: 254780349 and conserved domain: TIGR01788
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.54 E-value=2.1e-05 Score=58.12 Aligned_cols=343 Identities=20% Similarity=0.277 Sum_probs=229.4
Q ss_pred CHHHHHHHHHHHCHHH-HHHHHHHHHHH-HHCCCCCCC--CCCCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHH
Q ss_conf 0367764697858999-99999999999-838881043--010298999983051028865--79888753360067999
Q gi|254780349|r 6 KNRFFQQSLIESDPDV-FSLIGQESCRQ-NDEIQLIAS--ENIVSRAVLEAQGSILTNKYA--EGYPSKRYYGGCQYVDD 79 (433)
Q Consensus 6 ~~~~~~~~l~~~Dpei-~~~i~~e~~rq-~~~l~LiAS--EN~~S~~v~~~l~S~l~nkya--eG~pg~ryy~G~~~~d~ 79 (433)
T Consensus 22 Ky~~---P~~~m~~~~AYqlI~DEL~LDGNprLNL-AsFV~Twme~EA~KLm~e~~~KN~ID~dEYPq------T--ar~ 89 (493)
T TIGR01788 22 KYEM---PEEEMPPDAAYQLIHDELSLDGNPRLNL-ASFVTTWMEPEAEKLMDETLNKNMIDKDEYPQ------T--ARE 89 (493)
T ss_pred CCCC---CCCCCCHHHHHHHHHHHCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH------H--HHH
T ss_conf 5538---6888887999887555404577622232-13247877767899997255777011001654------4--898
Q ss_pred HHHHHHHHHHHHCCCC-CEECCCHH-------HHH-HHHHHHHHH-----------HCCCC--E---EEECCCCCCCCCC
Q ss_conf 9999999999871886-30100001-------679-999999983-----------15487--4---8812334484111
Q gi|254780349|r 80 IENIAIERAKKLFNVN-FVNVQSHS-------GSQ-MNQGVFLAL-----------MHPGD--S---FMGLSLDSGGHLT 134 (433)
Q Consensus 80 iE~la~~~a~~lF~a~-~anvqp~S-------G~~-An~av~~AL-----------l~pGD--~---Il~~~l~~GGHls 134 (433)
T Consensus 90 i~~RCVnM~a~LfhAp~~~D~~~~savGtsTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~g~~vQ------ 163 (493)
T TIGR01788 90 IENRCVNMLADLFHAPALKDEEAASAVGTSTIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVMGSNVQ------ 163 (493)
T ss_pred HHHCCEEHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCE------
T ss_conf 85043012344114787778775664351773258999987777579999999863888787887236079861------
Q ss_pred CCCCCCCC--CCCCCC--CCCCCCC-CCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCCCCHHHHHHHHH----------
Q ss_conf 47665433--333220--1366583-2356598999999986046678-970552435363799998864----------
Q gi|254780349|r 135 HGSSVNMS--GKWFKA--IPYNVRK-EDGLLDMHEIESLAIEYNPKLI-IVGGTAYSRVWDWERFRSIAD---------- 198 (433)
Q Consensus 135 hg~~~~~~--g~~~~~--~~y~~d~-~~~~ID~d~~~~~a~~~kPklI-i~G~S~y~~~~d~~~l~eIa~---------- 198 (433)
T Consensus 164 ----VCWEKF~RYfdVE~R~VP~~~r~r~~i~Pe~~~~~vDENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWs 239 (493)
T TIGR01788 164 ----VCWEKFARYFDVELREVPMDKRDRYVIDPEEVVDLVDENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWS 239 (493)
T ss_pred ----EEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ----6421220335540136720777760118899998607675248887472325870888999999999742788747
Q ss_pred HCCCEEEECCCCHHHHHHHHCCCCCC--------CCCCE-----------EEECCCCCCCCCCC-EEEEECCCC-HHHHC
Q ss_conf 17978991862012443200012322--------00235-----------67404565225674-489833620-56501
Q gi|254780349|r 199 SIGAYLMADISHISGLVVGGQHPSPV--------PHCHI-----------VTTTTHKSLRGPRG-GLIMTNHAD-LAKKI 257 (433)
Q Consensus 199 ~~ga~l~~D~aH~~GLIa~g~~~~Pl--------~~ADv-----------vt~sTHKtl~GPrg-GiI~~~~~e-~~~~i 257 (433)
T Consensus 240 g~d~PiHvDAA-SGGFi~------PFGfekehmk~~PDl~WDFRLprV~SINvSGHKYGLvYPGvGWViWRd~e~LPeEL 312 (493)
T TIGR01788 240 GWDIPIHVDAA-SGGFIA------PFGFEKEHMKVEPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEEL 312 (493)
T ss_pred CCCCCEEEECC-CCCCCC------CCCCCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHC
T ss_conf 78766477446-788113------76635341154571265661782468704655124647661268875811370131
Q ss_pred CHHH------CHHHH---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC----C-CCCCCCCC----
Q ss_conf 6646------54322---34455666899999999735648999999998889999998616----8-52334588----
Q gi|254780349|r 258 NSAI------FPGLQ---GGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL----G-FDIVSGGT---- 319 (433)
Q Consensus 258 ~~av------fPg~q---g~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~----G-~~vv~ggT---- 319 (433)
T Consensus 313 iF~vnYLGg~~~tFtLNFSrp-~~qViaQYYnFlRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s~g~~sie 391 (493)
T TIGR01788 313 IFHVNYLGGDEPTFTLNFSRP-ANQVIAQYYNFLRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILSDGRESIE 391 (493)
T ss_pred EEECCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 110110266565430135576-2311364466885040134899998999999999999986069984588717875433
Q ss_pred ------------------CCCEEEE--CCCC------CCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf ------------------8981263--1665------5676799999888567188037899899998889851224666
Q gi|254780349|r 320 ------------------DNHLMLV--DLRS------KRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPS 373 (433)
Q Consensus 320 ------------------d~H~vlv--dl~~------~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~a 373 (433)
T Consensus 392 nDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~~~Y~~Yt~~~ls~~LR~rGWiVPAYtlP~~~~GsDd~~v~Ri---- 467 (493)
T TIGR01788 392 NDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDADEEYTGYTLYDLSHKLRERGWIVPAYTLPKNAEGSDDIEVLRI---- 467 (493)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE----
T ss_conf 4567740123313641227897779885368778888767899999985034731347888433567787279999----
Q ss_pred HHHCCCCHH
Q ss_conf 730799989
Q gi|254780349|r 374 GTTRGFKEK 382 (433)
Q Consensus 374 iTtrG~~e~ 382 (433)
T Consensus 468 VvRe~~~~d 476 (493)
T TIGR01788 468 VVREDFSRD 476 (493)
T ss_pred EECCCCCHH
T ss_conf 872589840