HHsearch alignment for GI: 254780349 and conserved domain: TIGR01788

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=98.54  E-value=2.1e-05  Score=58.12  Aligned_cols=343  Identities=20%  Similarity=0.277  Sum_probs=229.4

Q ss_pred             CHHHHHHHHHHHCHHH-HHHHHHHHHHH-HHCCCCCCC--CCCCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHH
Q ss_conf             0367764697858999-99999999999-838881043--010298999983051028865--79888753360067999
Q gi|254780349|r    6 KNRFFQQSLIESDPDV-FSLIGQESCRQ-NDEIQLIAS--ENIVSRAVLEAQGSILTNKYA--EGYPSKRYYGGCQYVDD   79 (433)
Q Consensus         6 ~~~~~~~~l~~~Dpei-~~~i~~e~~rq-~~~l~LiAS--EN~~S~~v~~~l~S~l~nkya--eG~pg~ryy~G~~~~d~   79 (433)
T Consensus        22 Ky~~---P~~~m~~~~AYqlI~DEL~LDGNprLNL-AsFV~Twme~EA~KLm~e~~~KN~ID~dEYPq------T--ar~   89 (493)
T TIGR01788        22 KYEM---PEEEMPPDAAYQLIHDELSLDGNPRLNL-ASFVTTWMEPEAEKLMDETLNKNMIDKDEYPQ------T--ARE   89 (493)
T ss_pred             CCCC---CCCCCCHHHHHHHHHHHCCCCCCHHHHH-HCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH------H--HHH
T ss_conf             5538---6888887999887555404577622232-13247877767899997255777011001654------4--898


Q ss_pred             HHHHHHHHHHHHCCCC-CEECCCHH-------HHH-HHHHHHHHH-----------HCCCC--E---EEECCCCCCCCCC
Q ss_conf             9999999999871886-30100001-------679-999999983-----------15487--4---8812334484111
Q gi|254780349|r   80 IENIAIERAKKLFNVN-FVNVQSHS-------GSQ-MNQGVFLAL-----------MHPGD--S---FMGLSLDSGGHLT  134 (433)
Q Consensus        80 iE~la~~~a~~lF~a~-~anvqp~S-------G~~-An~av~~AL-----------l~pGD--~---Il~~~l~~GGHls  134 (433)
T Consensus        90 i~~RCVnM~a~LfhAp~~~D~~~~savGtsTiGSSEAiMLGGlAmK~rWr~R~~~~Gk~~d~kKPNlv~g~~vQ------  163 (493)
T TIGR01788        90 IENRCVNMLADLFHAPALKDEEAASAVGTSTIGSSEAIMLGGLAMKWRWRKRMKAAGKPADAKKPNLVMGSNVQ------  163 (493)
T ss_pred             HHHCCEEHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCE------
T ss_conf             85043012344114787778775664351773258999987777579999999863888787887236079861------


Q ss_pred             CCCCCCCC--CCCCCC--CCCCCCC-CCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCCCCHHHHHHHHH----------
Q ss_conf             47665433--333220--1366583-2356598999999986046678-970552435363799998864----------
Q gi|254780349|r  135 HGSSVNMS--GKWFKA--IPYNVRK-EDGLLDMHEIESLAIEYNPKLI-IVGGTAYSRVWDWERFRSIAD----------  198 (433)
Q Consensus       135 hg~~~~~~--g~~~~~--~~y~~d~-~~~~ID~d~~~~~a~~~kPklI-i~G~S~y~~~~d~~~l~eIa~----------  198 (433)
T Consensus       164 ----VCWEKF~RYfdVE~R~VP~~~r~r~~i~Pe~~~~~vDENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWs  239 (493)
T TIGR01788       164 ----VCWEKFARYFDVELREVPMDKRDRYVIDPEEVVDLVDENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWS  239 (493)
T ss_pred             ----EEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             ----6421220335540136720777760118899998607675248887472325870888999999999742788747


Q ss_pred             HCCCEEEECCCCHHHHHHHHCCCCCC--------CCCCE-----------EEECCCCCCCCCCC-EEEEECCCC-HHHHC
Q ss_conf             17978991862012443200012322--------00235-----------67404565225674-489833620-56501
Q gi|254780349|r  199 SIGAYLMADISHISGLVVGGQHPSPV--------PHCHI-----------VTTTTHKSLRGPRG-GLIMTNHAD-LAKKI  257 (433)
Q Consensus       199 ~~ga~l~~D~aH~~GLIa~g~~~~Pl--------~~ADv-----------vt~sTHKtl~GPrg-GiI~~~~~e-~~~~i  257 (433)
T Consensus       240 g~d~PiHvDAA-SGGFi~------PFGfekehmk~~PDl~WDFRLprV~SINvSGHKYGLvYPGvGWViWRd~e~LPeEL  312 (493)
T TIGR01788       240 GWDIPIHVDAA-SGGFIA------PFGFEKEHMKVEPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEEL  312 (493)
T ss_pred             CCCCCEEEECC-CCCCCC------CCCCCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHC
T ss_conf             78766477446-788113------76635341154571265661782468704655124647661268875811370131


Q ss_pred             CHHH------CHHHH---HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC----C-CCCCCCCC----
Q ss_conf             6646------54322---34455666899999999735648999999998889999998616----8-52334588----
Q gi|254780349|r  258 NSAI------FPGLQ---GGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL----G-FDIVSGGT----  319 (433)
Q Consensus       258 ~~av------fPg~q---g~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~----G-~~vv~ggT----  319 (433)
T Consensus       313 iF~vnYLGg~~~tFtLNFSrp-~~qViaQYYnFlRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~Fe~~s~g~~sie  391 (493)
T TIGR01788       313 IFHVNYLGGDEPTFTLNFSRP-ANQVIAQYYNFLRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGPFEILSDGRESIE  391 (493)
T ss_pred             EEECCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf             110110266565430135576-2311364466885040134899998999999999999986069984588717875433


Q ss_pred             ------------------CCCEEEE--CCCC------CCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             ------------------8981263--1665------5676799999888567188037899899998889851224666
Q gi|254780349|r  320 ------------------DNHLMLV--DLRS------KRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPS  373 (433)
Q Consensus       320 ------------------d~H~vlv--dl~~------~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~a  373 (433)
T Consensus       392 nDsaPksvkDYWehPqaY~~~~P~VaFrLKd~~~~~Y~~Yt~~~ls~~LR~rGWiVPAYtlP~~~~GsDd~~v~Ri----  467 (493)
T TIGR01788       392 NDSAPKSVKDYWEHPQAYKSGIPLVAFRLKDDADEEYTGYTLYDLSHKLRERGWIVPAYTLPKNAEGSDDIEVLRI----  467 (493)
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE----
T ss_conf             4567740123313641227897779885368778888767899999985034731347888433567787279999----


Q ss_pred             HHHCCCCHH
Q ss_conf             730799989
Q gi|254780349|r  374 GTTRGFKEK  382 (433)
Q Consensus       374 iTtrG~~e~  382 (433)
T Consensus       468 VvRe~~~~d  476 (493)
T TIGR01788       468 VVREDFSRD  476 (493)
T ss_pred             EECCCCCHH
T ss_conf             872589840