HHsearch alignment for GI: 254780349 and conserved domain: TIGR01976
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein; InterPro: IPR011340 This entry describes probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. The most closely related characterised proteins are active as cysteine desulphurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown..
Probab=99.10 E-value=1.9e-08 Score=79.40 Aligned_cols=326 Identities=19% Similarity=0.185 Sum_probs=208.0
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCE-ECCCHHHHHH-HHHHHH-----HH
Q ss_conf 0298999983051028865798887533600-67999999999999987188630-1000016799-999999-----83
Q gi|254780349|r 44 IVSRAVLEAQGSILTNKYAEGYPSKRYYGGC-QYVDDIENIAIERAKKLFNVNFV-NVQSHSGSQM-NQGVFL-----AL 115 (433)
Q Consensus 44 ~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~-~~~d~iE~la~~~a~~lF~a~~a-nvqp~SG~~A-n~av~~-----AL 115 (433)
T Consensus 32 q~Pq~V~dAv~~~L~~~~A~---~gg~~~~~G~~~~~~vd~AR~a~A~LlnA~~Pe~vv~--G~~~T~L~~~ls~a~~~~ 106 (410)
T TIGR01976 32 QIPQSVLDAVSAALTRSNAN---RGGAYESSGRKADQVVDDAREAVADLLNAESPEEVVF--GANATSLAYLLSRALSRR 106 (410)
T ss_pred CCCHHHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCHHHHHHHHHHHHHHH
T ss_conf 77734799999998741301---3767766306899999999999999726798885676--786689999999998512
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE-CCCCC-CCCCHHHH
Q ss_conf 15487488123344841114766543333322013665832356598999999986046678970-55243-53637999
Q gi|254780349|r 116 MHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG-GTAYS-RVWDWERF 193 (433)
Q Consensus 116 l~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G-~S~y~-~~~d~~~l 193 (433)
T Consensus 107 ~~~GDEvivt~LDHeaNisp-W~~~a~~~Ga~Vkw~~~d~~~~~L~~~~L~~Ll-s~rTRLVAvt~ASn~~Gs~~dl~A~ 184 (410)
T TIGR01976 107 WGPGDEVIVTRLDHEANISP-WLQAAEDAGAKVKWARVDEADGELHPDDLASLL-SPRTRLVAVTAASNLLGSIVDLAAL 184 (410)
T ss_pred CCCCCEEEEECCCCCCCHHH-HHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCC-CCCHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 68985589716766001368-999998389789996336231544869982366-8822555623440232551158899
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCCEEEEECCCCHHHHCC--HHHC-----HH
Q ss_conf 988641797899186201244320001232200--23567404565225674489833620565016--6465-----43
Q gi|254780349|r 194 RSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRGGLIMTNHADLAKKIN--SAIF-----PG 264 (433)
Q Consensus 194 ~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrgGiI~~~~~e~~~~i~--~avf-----Pg 264 (433)
T Consensus 185 ~~~vh~aGA~v~VDaVhyaP----H~L~D-vqa~gaD~l~cSaYK~f-GPH~G~l~~R~-~~~~~l~~~k~~~~~d~~P~ 257 (410)
T TIGR01976 185 TELVHAAGALVYVDAVHYAP----HGLID-VQALGADFLVCSAYKFF-GPHLGILWGRP-ELLKSLPPYKLEFSEDTGPE 257 (410)
T ss_pred HHHHHHCCCEEEECHHHHCC----CCCCC-HHHHCCCEEEECCEECC-CCCEEEEEECH-HHHCCCCCCCCCCCCCCCCC
T ss_conf 99998759879881110045----66641-34227887998563116-88501787114-66404687633677888885
Q ss_pred --HHHHHHHHHHHHHHHHHH------------------HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----
Q ss_conf --223445566689999999------------------97356489999999988899999986168523345888----
Q gi|254780349|r 265 --LQGGPFMHSIAAKAVAFG------------------EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTD---- 320 (433)
Q Consensus 265 --~qg~~~~~~iaa~aval~------------------Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd---- 320 (433)
T Consensus 258 r~E~GT~~yEllAG~~AavdYLa~lg~nlA~~~~gsrR~~lv~sf~~~~ayE~~l~~~Ll~~L~~~P~~t~yG~~d~~R~ 337 (410)
T TIGR01976 258 RFELGTLQYELLAGVVAAVDYLAGLGRNLAASANGSRRERLVASFEAIEAYENRLAERLLAGLSDLPGVTVYGVQDEKRL 337 (410)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 14514556026789999999999823210689886558999999999999999999999999874895699735578646
Q ss_pred ---CCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCC----CCCC-CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ---981263166556767999998885671880378998----9999-88898512246667307999899999999999
Q gi|254780349|r 321 ---NHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPF----DPES-PFITSGIRLGTPSGTTRGFKEKDFEYIGELIA 392 (433)
Q Consensus 321 ---~H~vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~----D~~~-~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~ 392 (433)
T Consensus 338 ~~RvPTv~F~v--~~~~P~~~~~~La~~~v~~~~GHfYA~~~~~~LGl~~~~GvvR~gLaHY~t-------~eevd~l~~ 408 (410)
T TIGR01976 338 AERVPTVAFTV--AGLSPQRVVRRLADQGVDVWAGHFYAVRLLRRLGLEADGGVVRVGLAHYNT-------AEEVDRLLE 408 (410)
T ss_pred HHCCCEEEEEE--CCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCC-------HHHHHHHHH
T ss_conf 42597588972--787879999998536863312641168999865898988738985257798-------899999985