HHsearch alignment for GI: 254780349 and conserved domain: TIGR03235

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.77  E-value=5.7e-16  Score=131.69  Aligned_cols=316  Identities=14%  Similarity=0.179  Sum_probs=211.2

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHHHHHHHHH-
Q ss_conf             430102989999830510288657988875-3360067999999999999987188630100001679-9999999831-
Q gi|254780349|r   40 ASENIVSRAVLEAQGSILTNKYAEGYPSKR-YYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQ-MNQGVFLALM-  116 (433)
Q Consensus        40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~r-yy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~-An~av~~ALl-  116 (433)
T Consensus         5 aATtp~~~~v~~~~~~~~~~~~--~Np~s~~h~~g~~a~-~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl~i~g~~~   81 (354)
T TIGR03235         5 NATTPVDPEVAEVMLPFLLEEF--GNPGSRTHEHGHNAK-KAVERARKQVAEALGAQTKEVIFTSGATESNNIAILGLAR   81 (354)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             6789899999999999998668--797303128999999-9999999999998099967789968837999999999998


Q ss_pred             ---CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCHH
Q ss_conf             ---54874881233448411147665433333220136658323565989999999860466789705--5243536379
Q gi|254780349|r  117 ---HPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG--TAYSRVWDWE  191 (433)
Q Consensus       117 ---~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~--S~y~~~~d~~  191 (433)
T Consensus        82 ~~~~~g~~ii~s~~EH~svl~~~~--~l~~~G~~v~~~~vd~-~G~id~~~l~~~l~-~~t~lvsi~~~nnetG~i~pi~  157 (354)
T TIGR03235        82 AHENKGKHIITTAIEHPAILEPAR--ALERNGFTVTYLEVDE-SGRVSVEELADAIR-DDTLLVSIMHVNNETGSLQPIR  157 (354)
T ss_pred             HHHCCCCEEEECHHHHHHHHHHHH--HHHHCCCEEEEECCCC-CCCCCHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHH
T ss_conf             502699999981003044799999--9996496899955578-98287799998726-8977999988756667638899


Q ss_pred             HHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCC--CCCEEEECCCCCCCCCCC-EEEEECCCCHHH--HCC--------
Q ss_conf             9998864179789918620124432000123220--023567404565225674-489833620565--016--------
Q gi|254780349|r  192 RFRSIADSIGAYLMADISHISGLVVGGQHPSPVP--HCHIVTTTTHKSLRGPRG-GLIMTNHADLAK--KIN--------  258 (433)
Q Consensus       192 ~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~--~ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~--~i~--------  258 (433)
T Consensus       158 ~i~~~~~~~g~~~~vDa~Q~~g~~-----~id~~~~~~D~~s~S~HK-~~GP~GiG~L~vr~~-~~~~~~l~Pl~~GGgq  230 (354)
T TIGR03235       158 EIAELCEAREVFFHSDAAQVVGKI-----TVDLERDHIDLISLSGHK-AYGPKGIGALYIRKR-GKPKAPLAPIMFGGGQ  230 (354)
T ss_pred             HHHHHHHCCCCEEEEECHHCCCCC-----CCCHHHHCCCEEEEECCC-CCCCCCEEEEEEECC-CCCCCCCCCEECCCCC
T ss_conf             998865225641562500115875-----557788499737631000-348871499998046-6766664640368988


Q ss_pred             -HHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC--CEEEECCCCCCC
Q ss_conf             -6465432234455666899999999735648999999998889999998616--85233458889--812631665567
Q gi|254780349|r  259 -SAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL--GFDIVSGGTDN--HLMLVDLRSKRM  333 (433)
Q Consensus       259 -~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~--G~~vv~ggTd~--H~vlvdl~~~~~  333 (433)
T Consensus       231 e~g~r~---GT~nv~~i~g~~~A~~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s--~~~~gi  304 (354)
T TIGR03235       231 ERGLRP---GTLPVPLIVGMGEAAEIA-RRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILS--FSFEGV  304 (354)
T ss_pred             CCCCCC---CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE--EEECCC
T ss_conf             687468---996599999999999999-98289999999999999999997459965965882247588899--997996


Q ss_pred             CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHH
Q ss_conf             679999988856718803789989999888985122466673079998999
Q gi|254780349|r  334 TGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDF  384 (433)
Q Consensus       334 ~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em  384 (433)
T Consensus       305 ~~~~l~~~L~-~~iavst-------GS-ACssg~~~pS~vL~amg~~~~~a  346 (354)
T TIGR03235       305 NPEALIRNLK-ADAAVST-------GS-ACTSSKYTPSHVLQAMGLDTDRA  346 (354)
T ss_pred             CHHHHHHHHC-CCCEEEH-------HH-HCCCCCCCCCHHHHHCCCCHHHH
T ss_conf             9999999863-9989982-------24-20699899898898659997997