HHsearch alignment for GI: 254780349 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.77 E-value=5.7e-16 Score=131.69 Aligned_cols=316 Identities=14% Similarity=0.179 Sum_probs=211.2
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHHHHHHHHH-
Q ss_conf 430102989999830510288657988875-3360067999999999999987188630100001679-9999999831-
Q gi|254780349|r 40 ASENIVSRAVLEAQGSILTNKYAEGYPSKR-YYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQ-MNQGVFLALM- 116 (433)
Q Consensus 40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~r-yy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~-An~av~~ALl- 116 (433)
T Consensus 5 aATtp~~~~v~~~~~~~~~~~~--~Np~s~~h~~g~~a~-~~le~aR~~ia~~lga~~~eiiFTsg~Tes~nl~i~g~~~ 81 (354)
T TIGR03235 5 NATTPVDPEVAEVMLPFLLEEF--GNPGSRTHEHGHNAK-KAVERARKQVAEALGAQTKEVIFTSGATESNNIAILGLAR 81 (354)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 6789899999999999998668--797303128999999-9999999999998099967789968837999999999998
Q ss_pred ---CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCHH
Q ss_conf ---54874881233448411147665433333220136658323565989999999860466789705--5243536379
Q gi|254780349|r 117 ---HPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG--TAYSRVWDWE 191 (433)
Q Consensus 117 ---~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~--S~y~~~~d~~ 191 (433)
T Consensus 82 ~~~~~g~~ii~s~~EH~svl~~~~--~l~~~G~~v~~~~vd~-~G~id~~~l~~~l~-~~t~lvsi~~~nnetG~i~pi~ 157 (354)
T TIGR03235 82 AHENKGKHIITTAIEHPAILEPAR--ALERNGFTVTYLEVDE-SGRVSVEELADAIR-DDTLLVSIMHVNNETGSLQPIR 157 (354)
T ss_pred HHHCCCCEEEECHHHHHHHHHHHH--HHHHCCCEEEEECCCC-CCCCCHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHH
T ss_conf 502699999981003044799999--9996496899955578-98287799998726-8977999988756667638899
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCC--CCCEEEECCCCCCCCCCC-EEEEECCCCHHH--HCC--------
Q ss_conf 9998864179789918620124432000123220--023567404565225674-489833620565--016--------
Q gi|254780349|r 192 RFRSIADSIGAYLMADISHISGLVVGGQHPSPVP--HCHIVTTTTHKSLRGPRG-GLIMTNHADLAK--KIN-------- 258 (433)
Q Consensus 192 ~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~--~ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~--~i~-------- 258 (433)
T Consensus 158 ~i~~~~~~~g~~~~vDa~Q~~g~~-----~id~~~~~~D~~s~S~HK-~~GP~GiG~L~vr~~-~~~~~~l~Pl~~GGgq 230 (354)
T TIGR03235 158 EIAELCEAREVFFHSDAAQVVGKI-----TVDLERDHIDLISLSGHK-AYGPKGIGALYIRKR-GKPKAPLAPIMFGGGQ 230 (354)
T ss_pred HHHHHHHCCCCEEEEECHHCCCCC-----CCCHHHHCCCEEEEECCC-CCCCCCEEEEEEECC-CCCCCCCCCEECCCCC
T ss_conf 998865225641562500115875-----557788499737631000-348871499998046-6766664640368988
Q ss_pred -HHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCC--CEEEECCCCCCC
Q ss_conf -6465432234455666899999999735648999999998889999998616--85233458889--812631665567
Q gi|254780349|r 259 -SAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL--GFDIVSGGTDN--HLMLVDLRSKRM 333 (433)
Q Consensus 259 -~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~--G~~vv~ggTd~--H~vlvdl~~~~~ 333 (433)
T Consensus 231 e~g~r~---GT~nv~~i~g~~~A~~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~v~i~g~~~~r~p~i~s--~~~~gi 304 (354)
T TIGR03235 231 ERGLRP---GTLPVPLIVGMGEAAEIA-RRNAQAWGVRLRAMCNLLRDALQTSLPGVKLNGDPAETLPNILS--FSFEGV 304 (354)
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE--EEECCC
T ss_conf 687468---996599999999999999-98289999999999999999997459965965882247588899--997996
Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 679999988856718803789989999888985122466673079998999
Q gi|254780349|r 334 TGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDF 384 (433)
Q Consensus 334 ~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em 384 (433)
T Consensus 305 ~~~~l~~~L~-~~iavst-------GS-ACssg~~~pS~vL~amg~~~~~a 346 (354)
T TIGR03235 305 NPEALIRNLK-ADAAVST-------GS-ACTSSKYTPSHVLQAMGLDTDRA 346 (354)
T ss_pred CHHHHHHHHC-CCCEEEH-------HH-HCCCCCCCCCHHHHHCCCCHHHH
T ss_conf 9999999863-9989982-------24-20699899898898659997997