HHsearch alignment for GI: 254780349 and conserved domain: TIGR03392

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.83  E-value=4.7e-17  Score=139.23  Aligned_cols=337  Identities=16%  Similarity=0.193  Sum_probs=216.8

Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCHHH-HHHHHHHHHHH-
Q ss_conf             0430102989999830510288657988875336006799999999999998718863-01000016-79999999983-
Q gi|254780349|r   39 IASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNF-VNVQSHSG-SQMNQGVFLAL-  115 (433)
Q Consensus        39 iASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~-anvqp~SG-~~An~av~~AL-  115 (433)
T Consensus        22 nAatt~~p~~V~~a~~~~~~~~~~--n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iifts~~Te~~n~~~~~~~   99 (398)
T TIGR03392        22 SAATALKPQAVIDATQQFYRLSSG--TVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA   99 (398)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             863268989999999999986348--887514399999999999999999997095998979995877999998987768


Q ss_pred             ---HCCCCEEEECCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC--CCCCC
Q ss_conf             ---15487488123344841114766-543-333322013665832356598999999986046678970552--43536
Q gi|254780349|r  116 ---MHPGDSFMGLSLDSGGHLTHGSS-VNM-SGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTA--YSRVW  188 (433)
Q Consensus       116 ---l~pGD~Il~~~l~~GGHlshg~~-~~~-~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~--y~~~~  188 (433)
T Consensus       100 ~~~~~~gd~ii~s~~EH~s~~---~pw~~~~~~~g~~v~~~~~~~-~~~~d~~~l~~~i~-~~T~lVsi~~vsn~~G~i~  174 (398)
T TIGR03392       100 RPRLQPGDEIIVSEAEHHANL---IPWLMVAQQTGAKVVKLPIGA-DLLPDIRQLPELLT-PRTRILALGQMSNVTGGCP  174 (398)
T ss_pred             HHHCCCCCEEEEECCCCCCCH---HHHHHHHHHCCCEEEEECCCC-CCCCCHHHHHHHCC-CCCCEEEEECCCCCCCCCC
T ss_conf             872399898998244003423---899988764485279961478-89879999998525-7870899825556788858


Q ss_pred             CHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCCCHHHHCCHHHCHH-
Q ss_conf             37999988641797899186201244320001232200--23567404565225674-489833620565016646543-
Q gi|254780349|r  189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHADLAKKINSAIFPG-  264 (433)
Q Consensus       189 d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i~~avfPg-  264 (433)
T Consensus       175 pi~~I~~~~~~~g~~~~vDa~Q~~g~~-----~idv~~~~~D~~~~S~hK-l~GP~G~G~Ly~~~-~~~~~l~p-~~~Gg  246 (398)
T TIGR03392       175 DLARAITLAHQYGAVVVVDGAQGVVHG-----PPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKT-ELLEAMPP-WQGGG  246 (398)
T ss_pred             CHHHHHHHHHHCCCEEEEECCCCCCCC-----CCCCCCCCCCEEEEECCC-CCCCCCEEEEEECC-HHHHHCCC-CCCCC
T ss_conf             799999999865974786334115620-----334102678779986553-56998418999841-14743797-35799


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCE
Q ss_conf             --------------------2234455666899999999735648999999998889999998616-8523345888981
Q gi|254780349|r  265 --------------------LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL-GFDIVSGGTDNHL  323 (433)
Q Consensus       265 --------------------~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~-G~~vv~ggTd~H~  323 (433)
T Consensus       247 ~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~l~~l~g~~~~~-~~~~~~  325 (398)
T TIGR03392       247 KMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFR-CPGSSL  325 (398)
T ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCE
T ss_conf             7344334777644555021146885487899999999999964999999999999999999986389964457-999967


Q ss_pred             EEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC--CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             26316655676799999888567188037899899--998889851224666730799989999999999999602
Q gi|254780349|r  324 MLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDP--ESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDG  397 (433)
Q Consensus       324 vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~--~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~~  397 (433)
T Consensus       326 ~~f~~--~~~~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT----~edId~li~aL~~~l~~  395 (398)
T TIGR03392       326 LAFDF--AGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT----QQDVDALVDAVGAALEL  395 (398)
T ss_pred             EEEEE--CCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
T ss_conf             99987--993999999999778979966866548999986899879996788889----99999999999999998