HHsearch alignment for GI: 254780349 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.83 E-value=4.7e-17 Score=139.23 Aligned_cols=337 Identities=16% Similarity=0.193 Sum_probs=216.8
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCHHH-HHHHHHHHHHH-
Q ss_conf 0430102989999830510288657988875336006799999999999998718863-01000016-79999999983-
Q gi|254780349|r 39 IASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNF-VNVQSHSG-SQMNQGVFLAL- 115 (433)
Q Consensus 39 iASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~-anvqp~SG-~~An~av~~AL- 115 (433)
T Consensus 22 nAatt~~p~~V~~a~~~~~~~~~~--n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iifts~~Te~~n~~~~~~~ 99 (398)
T TIGR03392 22 SAATALKPQAVIDATQQFYRLSSG--TVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA 99 (398)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 863268989999999999986348--887514399999999999999999997095998979995877999998987768
Q ss_pred ---HCCCCEEEECCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC--CCCCC
Q ss_conf ---15487488123344841114766-543-333322013665832356598999999986046678970552--43536
Q gi|254780349|r 116 ---MHPGDSFMGLSLDSGGHLTHGSS-VNM-SGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTA--YSRVW 188 (433)
Q Consensus 116 ---l~pGD~Il~~~l~~GGHlshg~~-~~~-~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~--y~~~~ 188 (433)
T Consensus 100 ~~~~~~gd~ii~s~~EH~s~~---~pw~~~~~~~g~~v~~~~~~~-~~~~d~~~l~~~i~-~~T~lVsi~~vsn~~G~i~ 174 (398)
T TIGR03392 100 RPRLQPGDEIIVSEAEHHANL---IPWLMVAQQTGAKVVKLPIGA-DLLPDIRQLPELLT-PRTRILALGQMSNVTGGCP 174 (398)
T ss_pred HHHCCCCCEEEEECCCCCCCH---HHHHHHHHHCCCEEEEECCCC-CCCCCHHHHHHHCC-CCCCEEEEECCCCCCCCCC
T ss_conf 872399898998244003423---899988764485279961478-89879999998525-7870899825556788858
Q ss_pred CHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCCCHHHHCCHHHCHH-
Q ss_conf 37999988641797899186201244320001232200--23567404565225674-489833620565016646543-
Q gi|254780349|r 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHADLAKKINSAIFPG- 264 (433)
Q Consensus 189 d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~e~~~~i~~avfPg- 264 (433)
T Consensus 175 pi~~I~~~~~~~g~~~~vDa~Q~~g~~-----~idv~~~~~D~~~~S~hK-l~GP~G~G~Ly~~~-~~~~~l~p-~~~Gg 246 (398)
T TIGR03392 175 DLARAITLAHQYGAVVVVDGAQGVVHG-----PPDVQALDIDFYAFSGHK-LYGPTGIGVLYGKT-ELLEAMPP-WQGGG 246 (398)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCCC-----CCCCCCCCCCEEEEECCC-CCCCCCEEEEEECC-HHHHHCCC-CCCCC
T ss_conf 799999999865974786334115620-----334102678779986553-56998418999841-14743797-35799
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCE
Q ss_conf --------------------2234455666899999999735648999999998889999998616-8523345888981
Q gi|254780349|r 265 --------------------LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL-GFDIVSGGTDNHL 323 (433)
Q Consensus 265 --------------------~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~-G~~vv~ggTd~H~ 323 (433)
T Consensus 247 ~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~l~~l~g~~~~~-~~~~~~ 325 (398)
T TIGR03392 247 KMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFR-CPGSSL 325 (398)
T ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCE
T ss_conf 7344334777644555021146885487899999999999964999999999999999999986389964457-999967
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCC--CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 26316655676799999888567188037899899--998889851224666730799989999999999999602
Q gi|254780349|r 324 MLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDP--ESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDG 397 (433)
Q Consensus 324 vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~--~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~~ 397 (433)
T Consensus 326 ~~f~~--~~~~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT----~edId~li~aL~~~l~~ 395 (398)
T TIGR03392 326 LAFDF--AGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT----QQDVDALVDAVGAALEL 395 (398)
T ss_pred EEEEE--CCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCC----HHHHHHHHHHHHHHHHH
T ss_conf 99987--993999999999778979966866548999986899879996788889----99999999999999998