HHsearch alignment for GI: 254780349 and conserved domain: TIGR03538

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.34  E-value=3.5e-09  Score=84.44  Aligned_cols=326  Identities=14%  Similarity=0.101  Sum_probs=178.1

Q ss_pred             HHCCCCCCCCC--CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC----E-ECCCHHHH
Q ss_conf             83888104301--02989999830510288657988875336006799999999999998718863----0-10000167
Q gi|254780349|r   33 NDEIQLIASEN--IVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNF----V-NVQSHSGS  105 (433)
Q Consensus        33 ~~~l~LiASEN--~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~----a-nvqp~SG~  105 (433)
T Consensus        29 ~~iI~L~iG~Pd~~~P~~v~ea~~~al~~~~--~Y------~~~~G~~~LReAia~~~~~~~~~~~~~dp~~~I~vt~Ga  100 (394)
T TIGR03538        29 LPPIALSIGEPKHATPAFVLEALRENLHGLS--TY------PTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT  100 (394)
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHCCCC--CC------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCH
T ss_conf             9878784888999977999999999843888--99------999886999999999999973988778967769989888


Q ss_pred             -HHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf             -9999999983154874--881233448411147665433333220136658323-565989999999860466789705
Q gi|254780349|r  106 -QMNQGVFLALMHPGDS--FMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKED-GLLDMHEIESLAIEYNPKLIIVGG  181 (433)
Q Consensus       106 -~An~av~~ALl~pGD~--Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPklIi~G~  181 (433)
T Consensus       101 ~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~---~~~~~~--g~~~~~v~~~~e~~~~~d~~~l~~~~~-~~tk~iil~s  174 (394)
T TIGR03538       101 REALFAFAQAVINPGQAPLVVMPNPFYQIYE---GAALLA--GAEPYFLNCTAENGFLPDFDAVPESVW-RRCQLLFVCS  174 (394)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCCH---HHHHHC--CCEEEECCCCCCCCCCCCHHHHHHHCC-CCCEEEEECC
T ss_conf             9999999999729998108994788664529---999975--998997586734588889999987452-3665999889


Q ss_pred             CCCC-----CCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCC--CCC-C--------C-EEEECCCCCC--CCCC
Q ss_conf             5243-----53637999988641797899186201244320001232--200-2--------3-5674045652--2567
Q gi|254780349|r  182 TAYS-----RVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSP--VPH-C--------H-IVTTTTHKSL--RGPR  242 (433)
Q Consensus       182 S~y~-----~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~P--l~~-A--------D-vvt~sTHKtl--~GPr  242 (433)
T Consensus       175 P~NPTG~v~s~~~l~~l~~~a~~~~i~iisDE~Y~-~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R  253 (394)
T TIGR03538       175 PGNPTGAVLSLETLKKLIELADQYGFIIASDECYS-ELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSNLPGLR  253 (394)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC-CEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCE
T ss_conf             99998977787999999999732676999806833-27857888973787777662544447679995565444546751


Q ss_pred             CEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf             44898336205650166465432234455666899999999735648999999998889999998616852334-58889
Q gi|254780349|r  243 GGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVS-GGTDN  321 (433)
Q Consensus       243 gGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~-ggTd~  321 (433)
T Consensus       254 iG~~~~~~-~~i~~~~~~~~~~~~~~~~~~q~a~~aa-~~~--~~~~~~~r~~~~~r~~~~~~~L~~-~~~~~~P~Gg--  326 (394)
T TIGR03538       254 SGFVAGDA-EILKAFLRYRTYHGCAMPPPTQLASIAA-WND--EQHVRENRALYREKFAAVLEILGP-VLDLELPDAG--  326 (394)
T ss_pred             EEEEECCH-HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCC--HHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEE--
T ss_conf             79995799-9999999852237426899999999998-489--899999999999999999998642-7962579854--


Q ss_pred             CEEEECCCCCCCCHHH-HHHHHHHCCEEEECCCCCCCCC--CC--CC--CCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             8126316655676799-9998885671880378998999--98--88--985122466673079998999999999999
Q gi|254780349|r  322 HLMLVDLRSKRMTGKR-AESILGRVSITCNKNSIPFDPE--SP--FI--TSGIRLGTPSGTTRGFKEKDFEYIGELIAQ  393 (433)
Q Consensus       322 H~vlvdl~~~~~~G~~-a~~~Le~~gI~~Nkn~iP~D~~--~~--~~--~sGiRlGT~aiTtrG~~e~em~~iA~li~~  393 (433)
T Consensus       327 ~y~w~~~~~---~~~~f~~~ll~e~gV~v~----PG~~F~~~~~~~~~G~g~iR~s~~------~~~e~l~ea~~Rl~~  392 (394)
T TIGR03538       327 FYLWPKVPG---DDEAFARALYEEENVTVL----PGRYLSREAEGVNPGAGRVRIALV------APLEECVEAAERIRR  392 (394)
T ss_pred             EEEEEECCC---CHHHHHHHHHHHCCEEEE----CCHHHCCCCCCCCCCCCEEEEEEC------CCHHHHHHHHHHHHH
T ss_conf             899996899---999999999986899998----773416554578889998999975------989999999999998