HHsearch alignment for GI: 254780349 and conserved domain: TIGR03538
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.34 E-value=3.5e-09 Score=84.44 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=178.1
Q ss_pred HHCCCCCCCCC--CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC----E-ECCCHHHH
Q ss_conf 83888104301--02989999830510288657988875336006799999999999998718863----0-10000167
Q gi|254780349|r 33 NDEIQLIASEN--IVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNF----V-NVQSHSGS 105 (433)
Q Consensus 33 ~~~l~LiASEN--~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~----a-nvqp~SG~ 105 (433)
T Consensus 29 ~~iI~L~iG~Pd~~~P~~v~ea~~~al~~~~--~Y------~~~~G~~~LReAia~~~~~~~~~~~~~dp~~~I~vt~Ga 100 (394)
T TIGR03538 29 LPPIALSIGEPKHATPAFVLEALRENLHGLS--TY------PTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 100 (394)
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCCC--CC------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCH
T ss_conf 9878784888999977999999999843888--99------999886999999999999973988778967769989888
Q ss_pred -HHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf -9999999983154874--881233448411147665433333220136658323-565989999999860466789705
Q gi|254780349|r 106 -QMNQGVFLALMHPGDS--FMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKED-GLLDMHEIESLAIEYNPKLIIVGG 181 (433)
Q Consensus 106 -~An~av~~ALl~pGD~--Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPklIi~G~ 181 (433)
T Consensus 101 ~~al~~~~~~l~~pGd~~~V~~p~P~Y~~y~---~~~~~~--g~~~~~v~~~~e~~~~~d~~~l~~~~~-~~tk~iil~s 174 (394)
T TIGR03538 101 REALFAFAQAVINPGQAPLVVMPNPFYQIYE---GAALLA--GAEPYFLNCTAENGFLPDFDAVPESVW-RRCQLLFVCS 174 (394)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCH---HHHHHC--CCEEEECCCCCCCCCCCCHHHHHHHCC-CCCEEEEECC
T ss_conf 9999999999729998108994788664529---999975--998997586734588889999987452-3665999889
Q ss_pred CCCC-----CCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCC--CCC-C--------C-EEEECCCCCC--CCCC
Q ss_conf 5243-----53637999988641797899186201244320001232--200-2--------3-5674045652--2567
Q gi|254780349|r 182 TAYS-----RVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSP--VPH-C--------H-IVTTTTHKSL--RGPR 242 (433)
Q Consensus 182 S~y~-----~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~P--l~~-A--------D-vvt~sTHKtl--~GPr 242 (433)
T Consensus 175 P~NPTG~v~s~~~l~~l~~~a~~~~i~iisDE~Y~-~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 253 (394)
T TIGR03538 175 PGNPTGAVLSLETLKKLIELADQYGFIIASDECYS-ELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSKRSNLPGLR 253 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC-CEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 99998977787999999999732676999806833-27857888973787777662544447679995565444546751
Q ss_pred CEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 44898336205650166465432234455666899999999735648999999998889999998616852334-58889
Q gi|254780349|r 243 GGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVS-GGTDN 321 (433)
Q Consensus 243 gGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~-ggTd~ 321 (433)
T Consensus 254 iG~~~~~~-~~i~~~~~~~~~~~~~~~~~~q~a~~aa-~~~--~~~~~~~r~~~~~r~~~~~~~L~~-~~~~~~P~Gg-- 326 (394)
T TIGR03538 254 SGFVAGDA-EILKAFLRYRTYHGCAMPPPTQLASIAA-WND--EQHVRENRALYREKFAAVLEILGP-VLDLELPDAG-- 326 (394)
T ss_pred EEEEECCH-HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCC--HHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEE--
T ss_conf 79995799-9999999852237426899999999998-489--899999999999999999998642-7962579854--
Q ss_pred CEEEECCCCCCCCHHH-HHHHHHHCCEEEECCCCCCCCC--CC--CC--CCCCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8126316655676799-9998885671880378998999--98--88--985122466673079998999999999999
Q gi|254780349|r 322 HLMLVDLRSKRMTGKR-AESILGRVSITCNKNSIPFDPE--SP--FI--TSGIRLGTPSGTTRGFKEKDFEYIGELIAQ 393 (433)
Q Consensus 322 H~vlvdl~~~~~~G~~-a~~~Le~~gI~~Nkn~iP~D~~--~~--~~--~sGiRlGT~aiTtrG~~e~em~~iA~li~~ 393 (433)
T Consensus 327 ~y~w~~~~~---~~~~f~~~ll~e~gV~v~----PG~~F~~~~~~~~~G~g~iR~s~~------~~~e~l~ea~~Rl~~ 392 (394)
T TIGR03538 327 FYLWPKVPG---DDEAFARALYEEENVTVL----PGRYLSREAEGVNPGAGRVRIALV------APLEECVEAAERIRR 392 (394)
T ss_pred EEEEEECCC---CHHHHHHHHHHHCCEEEE----CCHHHCCCCCCCCCCCCEEEEEEC------CCHHHHHHHHHHHHH
T ss_conf 899996899---999999999986899998----773416554578889998999975------989999999999998