>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.27 E-value=5.7e-09 Score=82.97 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=178.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C Q ss_conf 999999999999838881043010--29899998305102886579888753360067999999999999987188---6 Q gi|254780349|r 21 VFSLIGQESCRQNDEIQLIASENI--VSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNV---N 95 (433) Q Consensus 21 i~~~i~~e~~rq~~~l~LiASEN~--~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a---~ 95 (433) T Consensus 9 ~~~~~~~~~~~~~~vI~L~iG~Pd~p~p~~i~~a~~~a~~~---~~------Y~~~~G~~eLReaia~~~~~~~g~~~~~ 79 (357) T TIGR03539 9 LAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAADA---PG------YPQTWGTPELREAIVDWLERRRGVPGLD 79 (357) T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC---CC------CCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999988868999288879999999899999999971247---99------8998477999999999999971999799 Q ss_pred CEECCCHHHHHHHHHHH-HHH-HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 30100001679999999-983-1548748812334484111476654333332201366583235659899999998604 Q gi|254780349|r 96 FVNVQSHSGSQMNQGVF-LAL-MHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYN 173 (433) Q Consensus 96 ~anvqp~SG~~An~av~-~AL-l~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~k 173 (433) T Consensus 80 ~~~I~vt~G~~~al~~l~~~l~~~pGD~Vli~~P~y~~y~~---~~~~~g--~~~v~--~---------d~~~~-~~~~~ 142 (357) T TIGR03539 80 PTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEV---GALLAG--ATPVA--A---------DDPTE-LDPVG 142 (357) T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH---HHHHCC--CEEEE--C---------CCHHH-CCCCC T ss_conf 57599868879999999999707999989978887700899---999859--98982--3---------88666-79778 Q ss_pred CCEEEEECCCCC--C---CCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCC-------CCC-EEEECCCCCC-- Q ss_conf 667897055243--5---363799998864179789918620124432000123220-------023-5674045652-- Q gi|254780349|r 174 PKLIIVGGTAYS--R---VWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVP-------HCH-IVTTTTHKSL-- 238 (433) Q Consensus 174 PklIi~G~S~y~--~---~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~-------~AD-vvt~sTHKtl-- 238 (433) T Consensus 143 ~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~i~visDEiY-~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~~~~ 221 (357) T TIGR03539 143 PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECY-LELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNL 221 (357) T ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECHHHH-HHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCC T ss_conf 549998999896232082889999987320555899523324-7653589884302864537675767999615310045 Q ss_pred CCCCCEEEEECCCCHHHHCCHHH-CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC- Q ss_conf 25674489833620565016646-5432234455666899999999735648999999998889999998616852334- Q gi|254780349|r 239 RGPRGGLIMTNHADLAKKINSAI-FPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVS- 316 (433) Q Consensus 239 ~GPrgGiI~~~~~e~~~~i~~av-fPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~- 316 (433) T Consensus 222 ~G~RiG~~~~~~-~li~~l~~~~~~~~~-~~~~~~q~a~-~~al~~--~~~~~~~~~~~~~rr~~l~~~L~~~g~~~~~p 296 (357) T TIGR03539 222 AGYRAGFVAGDP-ALVAELLTVRKHAGL-MVPAPVQAAM-VAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDHS 296 (357) T ss_pred CCCEEEEEECCH-HHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC T ss_conf 561289996799-999999999985677-7889999999-999569--27899999999999999999998579776268 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC---CCCCC Q ss_conf 58889812631665567679999988856718803789989999888985---12246 Q gi|254780349|r 317 GGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSG---IRLGT 371 (433) Q Consensus 317 ggTd~H~vlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sG---iRlGT 371 (433) T Consensus 297 ~g~--~y~~~~~---~~~~~~~~~~l~e~gV~v~----PG~---~Fg~~g~~~vRis~ 342 (357) T TIGR03539 297 EAG--LYLWATR---GEDAWDTVDRLAELGILVA----PGD---FYGPAGSQHVRVAL 342 (357) T ss_pred CEE--EEEEEEC---CCCHHHHHHHHHHCCEEEE----CCC---CCCCCCCCEEEEEE T ss_conf 806--9998758---9999999999996998994----787---44789999799997

HHsearch alignment for GI: 254780349 and conserved domain: TIGR03539