HHsearch alignment for GI: 254780349 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.69 E-value=4e-14 Score=118.86 Aligned_cols=339 Identities=17% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHHCHHHHHHHH-HHHHHH---HHCCCCCCCCC--CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6469785899999999-999999---83888104301--02989999830510288657988875336006799999999
Q gi|254780349|r 11 QQSLIESDPDVFSLIG-QESCRQ---NDEIQLIASEN--IVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIA 84 (433)
Q Consensus 11 ~~~l~~~Dpei~~~i~-~e~~rq---~~~l~LiASEN--~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la 84 (433)
T Consensus 3 ~~r~~~~~~~~~~~i~~~a~~~~~~G~dvi~l~ig~pdf~~p~~i~~a~~~a~~~~~~~~------Y~~~~G~~~lreai 76 (383)
T TIGR03540 3 ADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHR------YPSYEGMLAYRQAV 76 (383)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC------CCCCCCCHHHHHHH
T ss_conf 458540899899999999999985699858888998999989999999999982888765------49987849999999
Q ss_pred HHHHHHHCCCCC--E-ECCCHHHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 999998718863--0-10000167-9999999983154874881233448411147665433333220136658323-56
Q gi|254780349|r 85 IERAKKLFNVNF--V-NVQSHSGS-QMNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKED-GL 159 (433)
Q Consensus 85 ~~~a~~lF~a~~--a-nvqp~SG~-~An~av~~ALl~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~-~~ 159 (433)
T Consensus 77 a~~~~~~~g~~~~p~~~vi~t~Ga~~al~~~~~~l~~pGD~Vli~~P~Y~~y~~---~--~~~~g~~~v~vpl~~~~~~~ 151 (383)
T TIGR03540 77 ADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRI---G--TLFAGGEPYEMPLKEENGFL 151 (383)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHH---H--HHHCCCEEEEEECCCCCCCC
T ss_conf 999999868989967669984782599999999966898989987898601699---9--99719858996133577985
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCC--C---CCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHC-CCCCCCC---CC--
Q ss_conf 59899999998604667897055243--5---363799998864179789918620124432000-1232200---23--
Q gi|254780349|r 160 LDMHEIESLAIEYNPKLIIVGGTAYS--R---VWDWERFRSIADSIGAYLMADISHISGLVVGGQ-HPSPVPH---CH-- 228 (433)
Q Consensus 160 ID~d~~~~~a~~~kPklIi~G~S~y~--~---~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~-~~~Pl~~---AD-- 228 (433)
T Consensus 152 ~d~e~l~~~~~-~~~k~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i~iIsDEiY~-~l~~~~~~~~s~~~~~~~~~~~ 229 (383)
T TIGR03540 152 PDFDAIPEDIA-KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYS-EITFDGYKAPSFLEVDGAKDVG 229 (383)
T ss_pred CCHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHH-HHCCCCCCCCCCEECCCCCCEE
T ss_conf 79999987452-377499989998970701210222201001245540576110255-5303899997711136655425
Q ss_pred EEEECCCCCC--CCCCCEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5674045652--25674489833620565016646543223445566689999999973564899999999888999999
Q gi|254780349|r 229 IVTTTTHKSL--RGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKK 306 (433)
Q Consensus 229 vvt~sTHKtl--~GPrgGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~ 306 (433)
T Consensus 230 i~~~S~SK~~~~~G~RiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~-~al~~-~~~~~~~~~~~~~~~r~~~~~~ 306 (383)
T TIGR03540 230 IEFHSLSKTYNMTGWRIGMAVGNA-DLIAGLGKVKTNVDSGVFQAIQYAAI-AALNG-PQDVVKEIRKIYQRRRDLLLEA 306 (383)
T ss_pred EEEEECCCCCCCCCCEEEEECCCH-HHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776302354478873489622899-99999999975513567659999999-99859-1999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCEEEECCCCCCCCHHHH-HHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86168523345888981263166556767999-998885671880378998999988898512246
Q gi|254780349|r 307 LQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRA-ESILGRVSITCNKNSIPFDPESPFITSGIRLGT 371 (433)
Q Consensus 307 L~~~G~~vv~ggTd~H~vlvdl~~~~~~G~~a-~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT 371 (433)
T Consensus 307 L~~~g~~~~~-p~g~~~~w~~~~~-~~~~~~~~~~ll~~~gV~v~----PG~~Fg~~g~~~iRl~~ 366 (383)
T TIGR03540 307 LKKIGIDVEK-PKATFYVWVPVPE-GYTSAEFAARLLEETGVVVT----PGVGFGEYGEGYIRISL 366 (383)
T ss_pred HHHCCCEEEC-CCCEEEEEEECCC-CCCHHHHHHHHHHHCCEEEE----CCHHHCCCCCCEEEEEE
T ss_conf 9876987735-7805799898999-98989999999983999998----88532889988699998