HHsearch alignment for GI: 254780349 and conserved domain: cd01494
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.82 E-value=2.8e-19 Score=154.74 Aligned_cols=161 Identities=25% Similarity=0.359 Sum_probs=124.2
Q ss_pred HHHHHHHHCCC--CCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 99999987188--630100001679999999983154874881233448411147665433333220136658323-565
Q gi|254780349|r 84 AIERAKKLFNV--NFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKED-GLL 160 (433)
Q Consensus 84 a~~~a~~lF~a--~~anvqp~SG~~An~av~~ALl~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~-~~I 160 (433)
T Consensus 5 ~e~~la~~~~~~~~~~i~~~-sgt~A~~~~~~~l~~~gd~vi~~~~~~~s~~~--~~~~~~g--~~~~~~~~~~~~~~~~ 79 (170)
T cd01494 5 LEEKLARLLQPGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYW--VAAELAG--AKPVPVPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHHCCCCCEEEEEC-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHHHCC--CEEEEECCCCCCCCCC
T ss_conf 99999998489989899956-69999999999972799999982684375689--9998659--8778723477875546
Q ss_pred CHHHHHHHHHHHCCCEEEEECCC--CCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCCCC
Q ss_conf 98999999986046678970552--4353637999988641797899186201244320001232200235674045652
Q gi|254780349|r 161 DMHEIESLAIEYNPKLIIVGGTA--YSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSL 238 (433)
Q Consensus 161 D~d~~~~~a~~~kPklIi~G~S~--y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~ADvvt~sTHKtl 238 (433)
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~I~~la~~~gi~livD~a~~~g~~~~~~~~~~~~~~D~~~~s~hK~l 159 (170)
T cd01494 80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNL 159 (170)
T ss_pred CHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 89999998559996368877401478732019999735620796999946843216066666777789859998986667
Q ss_pred CCCCCEEEEEC
Q ss_conf 25674489833
Q gi|254780349|r 239 RGPRGGLIMTN 249 (433)
Q Consensus 239 ~GPrgGiI~~~ 249 (433)
T Consensus 160 g~~g~g~l~~~ 170 (170)
T cd01494 160 GGEGGGVVIVK 170 (170)
T ss_pred CCCCEEEEEEC
T ss_conf 89857999989