HHsearch alignment for GI: 254780349 and conserved domain: cd06452
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.86 E-value=1.8e-19 Score=156.08 Aligned_cols=317 Identities=17% Similarity=0.220 Sum_probs=211.7
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 301029899998305102886579888753360067999999----9999999871886301000016799999999831
Q gi|254780349|r 41 SENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIEN----IAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALM 116 (433)
Q Consensus 41 SEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~----la~~~a~~lF~a~~anvqp~SG~~An~av~~ALl 116 (433)
T Consensus 9 ~~g~l~~~a~~a~~~-----~gdgysvcd~c~~--~ld~~~~P~i~efe~~aAeflG~d~A~~-V~Ggt~Gnqa~i~t~c 80 (361)
T cd06452 9 RGGRLTPEARKALIE-----WGDGYSVCDFCRG--RLDEIEKPPIKDFHHDLAEFLGMDEARV-TPGAREGKFAVMHSLC 80 (361)
T ss_pred HCCCCCHHHHHHHHH-----HCCCCCHHHHCCC--CCCCCCCCCHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHH
T ss_conf 169689999999998-----6786471452056--5334769988999999998719966999-4685208999999984
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH------HCCCEEEEECCC--CCCCC
Q ss_conf 5487488123344841114766543333322013665832356598999999986------046678970552--43536
Q gi|254780349|r 117 HPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIE------YNPKLIIVGGTA--YSRVW 188 (433)
Q Consensus 117 ~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~------~kPklIi~G~S~--y~~~~ 188 (433)
T Consensus 81 ~~GD~VIv~~na---H~S~~~a~~laG~~~~~v~~~~~~-~~~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~ 156 (361)
T cd06452 81 EKGDWVVVDGLA---HYTSYVAAERAGLNVREVPNTGHP-EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH 156 (361)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 799889855751---288998888638469995677685-6651889999999999986189964999966787736631
Q ss_pred CHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCC-CCCCC-CCEEEECCCCCCCCC-CCEEEEECCCCHHHHCCHH--HCH
Q ss_conf 379999886417978991862012443200012-32200-235674045652256-7448983362056501664--654
Q gi|254780349|r 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHP-SPVPH-CHIVTTTTHKSLRGP-RGGLIMTNHADLAKKINSA--IFP 263 (433)
Q Consensus 189 d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~-~Pl~~-ADvvt~sTHKtl~GP-rgGiI~~~~~e~~~~i~~a--vfP 263 (433)
T Consensus 157 dl~~I~~iah~y~iPvlvD~A~~~g-----~lpv~a~~~gaD~v~~s~hK~~~a~~p~gvL~~~~-~~~~~v~R~~~~~~ 230 (361)
T cd06452 157 DAKKIAKVCHEYGVPLLLNGAYTVG-----RMPVSGKELGADFIVGSGHKSMAASAPIGVLATTE-EWADIVFRTSQMFK 230 (361)
T ss_pred CHHHHHHHHHHCCCCEEECCCCCCC-----CCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEECC-HHHHHHHHHCCCCH
T ss_conf 3799999999859968971542247-----57987545079689986565553457437885050-67888874110110
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCE--------EE
Q ss_conf ---------32234455666899999999735648999999998889999998616-8523345888981--------26
Q gi|254780349|r 264 ---------GLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL-GFDIVSGGTDNHL--------ML 325 (433)
Q Consensus 264 ---------g~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~-G~~vv~ggTd~H~--------vl 325 (433)
T Consensus 231 ~K~~~~Lg~t~~~~~~~~lmAS~~~~-~~~v~-~~~----eev~~ar~~~~el~kI~G~~~~ge~p~~~dl~~~dt~~~~ 304 (361)
T cd06452 231 IKEVELLGCTLRGAPLVTLMASFPHV-KERVK-RWD----EEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFD 304 (361)
T ss_pred HHHHHHHCCCCCCCHHHHHHCCCHHH-HHHHH-HHH----HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECCCCCE
T ss_conf 45778746786551799998072999-99998-777----8999999999998428453121557776774561478632
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3166556767999998885671880378998999988898512246667307999899999999999996
Q gi|254780349|r 326 VDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQIL 395 (433)
Q Consensus 326 vdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L 395 (433)
T Consensus 305 ~~~~~~~~~G~~L~~~L~~rgI~~~~---~g~t------~-----~~~~~tyG~t~e~i~~l~~a~keI~ 360 (361)
T cd06452 305 EIAKKHKRRGYFLYSELKKRGIHGIK---PGLT------R-----YFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EEEECCCCCCCHHHHHHHHCCCEEEC---CCCC------C-----EEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 44104786500699999876976871---6853------3-----7999995168889999999999975