HHsearch alignment for GI: 254780349 and conserved domain: pfam03841
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=98.97 E-value=3.3e-07 Score=70.72 Aligned_cols=276 Identities=19% Similarity=0.228 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHC
Q ss_conf 029899998305102886------57988875336006799999999999998718863010000167999999998315
Q gi|254780349|r 44 IVSRAVLEAQGSILTNKY------AEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMH 117 (433)
Q Consensus 44 ~~S~~v~~~l~S~l~nky------aeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~An~av~~ALl~ 117 (433)
T Consensus 17 ~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R-------~~~----~~~ll~~ltgaE~a~v-VNnnAaAv~L~l~~la~ 84 (367)
T pfam03841 17 LLSEEAVEAAKEAARHYSNLEYDLESGKRGSR-------DSH----LEELLCELTGAEDALV-VNNNAAAVLLVLNTLAQ 84 (367)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCH-------HHH----HHHHHHHHHCCCEEEE-ECCCHHHHHHHHHHHHC
T ss_conf 89999999999986177203666741776635-------789----9999998639865999-87838999999998754
Q ss_pred CCCEEEECCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE-EEECCCCC----
Q ss_conf 487488123344841114-766------543333322013665832356598999999986046678-97055243----
Q gi|254780349|r 118 PGDSFMGLSLDSGGHLTH-GSS------VNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLI-IVGGTAYS---- 185 (433)
Q Consensus 118 pGD~Il~~~l~~GGHlsh-g~~------~~~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklI-i~G~S~y~---- 185 (433)
T Consensus 85 g~evivS-----RGelVeiGgsfRiPdim~~sG--a~LvEVGtTNrT~l~DYe~A----I~e~Ta~llkVH~SN~~i~GF 153 (367)
T pfam03841 85 GKEVIIS-----RGELVEIGGSFRIPDIMKQSG--ARLVEVGTTNRTHLKDYEQA----INENTALLMKVHTSNYRIQGF 153 (367)
T ss_pred CCCEEEE-----CCEEECCCCCCCCHHHHHHCC--CEEEEECCCCCCCHHHHHHH----CCCCCEEEEEEECCCCEECCC
T ss_conf 8905775-----554512387544089999659--78998256688898999987----082461899994265122374
Q ss_pred -CCCCHHHHHHHHHHCCCEEEECCCCHHHHHH---HHCCCCC-----CCC-CCEEEECCCCCCCCCCCEEEEECCCCHHH
Q ss_conf -5363799998864179789918620124432---0001232-----200-23567404565225674489833620565
Q gi|254780349|r 186 -RVWDWERFRSIADSIGAYLMADISHISGLVV---GGQHPSP-----VPH-CHIVTTTTHKSLRGPRGGLIMTNHADLAK 255 (433)
Q Consensus 186 -~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa---~g~~~~P-----l~~-ADvvt~sTHKtl~GPrgGiI~~~~~e~~~ 255 (433)
T Consensus 154 t~~v~~~el~~la~~~~ip~i~DlGS-G~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQAGII~Gkk-~lI~ 231 (367)
T pfam03841 154 TKEVSLAELVALGKEHGLPVYYDLGS-GSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQAGIIVGKK-ELIE 231 (367)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCC-CCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEECH-HHHH
T ss_conf 67799999999998769967997586-631122001799999899999739988998676456898532476459-9999
Q ss_pred HCCHHH-CHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHHHHHHHHHC---CCCC------
Q ss_conf 016646-54322344556668999999997356489-----------99999998889999998616---8523------
Q gi|254780349|r 256 KINSAI-FPGLQGGPFMHSIAAKAVAFGEALSSEFR-----------DYAKQIVLNSQALAKKLQFL---GFDI------ 314 (433)
Q Consensus 256 ~i~~av-fPg~qg~~~~~~iaa~aval~Ea~~~~f~-----------~Ya~qvv~NA~~La~~L~~~---G~~v------ 314 (433)
T Consensus 232 ~ikknPL~RAlR--vDKltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~l~~~~~~~~~~~v~~~~ 309 (367)
T pfam03841 232 RLKKNPLKRALR--VDKLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARLGSGAEVSVEPSF 309 (367)
T ss_pred HHHHCCHHHHHC--CCHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 746474445444--588999999999999849000001165899863999999999999999976751688259999777
Q ss_pred --CCCCCCC----CEEEECCCCCCCCHHHHHHHHHHCC
Q ss_conf --3458889----8126316655676799999888567
Q gi|254780349|r 315 --VSGGTDN----HLMLVDLRSKRMTGKRAESILGRVS 346 (433)
Q Consensus 315 --v~ggTd~----H~vlvdl~~~~~~G~~a~~~Le~~g 346 (433)
T Consensus 310 s~vGgGslP~~~lpS~al~i~~~~~~~~~l~~~LR~~~ 347 (367)
T pfam03841 310 SQIGGGSLPVKELPSAAVTIRPENMALDALKLRLRLLD 347 (367)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 74378878777688779998579899999999973799