HHsearch alignment for GI: 254780349 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=97.77 E-value=0.0053 Score=41.43 Aligned_cols=312 Identities=15% Similarity=0.150 Sum_probs=190.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC---CEECCCHHHHHHHHHHHHHH--HCCCCEEEE-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 3600679999999999999871886---30100001679999999983--154874881-23344841114766543333
Q gi|254780349|r 71 YGGCQYVDDIENIAIERAKKLFNVN---FVNVQSHSGSQMNQGVFLAL--MHPGDSFMG-LSLDSGGHLTHGSSVNMSGK 144 (433)
Q Consensus 71 y~G~~~~d~iE~la~~~a~~lF~a~---~anvqp~SG~~An~av~~AL--l~pGD~Il~-~~l~~GGHlshg~~~~~~g~ 144 (433)
T Consensus 48 AaGsSll~kLTn~l~~d~lr~~G~~s~~~~~vvP~aTGMsl-~~~L~~~~~rp~a~yViw~RiDqK---Sc~Kai~~AGl 123 (389)
T pfam05889 48 ALGSSVLAKLTNELVKDFLKLLGLREVKNCFVVPLATGMSL-LCMLSWRRKRPKAKYVIWPRIDQK---SSIKAAERAGF 123 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH-HHHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHCCC
T ss_conf 62318999999999999999829743165789504104799-999999855889978998635552---26899997697
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE---CCCC-CCCC-CHHHHHHHHHHCCCEEEECCCCH------HH
Q ss_conf 322013665832356598999999986046678970---5524-3536-37999988641797899186201------24
Q gi|254780349|r 145 WFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG---GTAY-SRVW-DWERFRSIADSIGAYLMADISHI------SG 213 (433)
Q Consensus 145 ~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G---~S~y-~~~~-d~~~l~eIa~~~ga~l~~D~aH~------~G 213 (433)
T Consensus 124 ~p~vVe~~~~~d~l~Td~~~ie~~i~~~g~~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~ 203 (389)
T pfam05889 124 EPRLVETVLDGDYLITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIR 203 (389)
T ss_pred EEEEEEEEECCCEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHH
T ss_conf 14887525228824358999999999838776689984466569999667999999999749974784303661799999
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEE-EECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 432000123220023567404565225674489-8336205650166465432234455666899999999735648999
Q gi|254780349|r 214 LVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLI-MTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDY 292 (433)
Q Consensus 214 LIa~g~~~~Pl~~ADvvt~sTHKtl~GPrgGiI-~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Y 292 (433)
T Consensus 204 ~i~~a~---r~GRVDa~VQStDKNflVPVGGaIIas~d~~~i~~i-s~~YPGRAS~---sp~lDlfITLLslG~~gy~~L 276 (389)
T pfam05889 204 LIAAAH---ECGRVDAVVQSLDKNFIVPVGGAIIAAFDESFIQEI-SEEYPGRASA---RPSKDKLITLLSLGCKAYLAL 276 (389)
T ss_pred HHHHHH---HCCCCEEEEEECCCCEEEECCCEEEEECCHHHHHHH-HHCCCCCCCC---CHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998---638821899706866255348748970888999999-8418997777---407999999999748889999
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCCCCCCCCCCEEE-ECCCCC-CC---CHHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf 99999888999999861----6852334588898126-316655-67---679999988856718803789989999888
Q gi|254780349|r 293 AKQIVLNSQALAKKLQF----LGFDIVSGGTDNHLML-VDLRSK-RM---TGKRAESILGRVSITCNKNSIPFDPESPFI 363 (433)
Q Consensus 293 a~qvv~NA~~La~~L~~----~G~~vv~ggTd~H~vl-vdl~~~-~~---~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~ 363 (433)
T Consensus 277 l~eRke~~~~l~e~L~~~a~~~ge~lL~-t~~N~IS~aitl~~l~~~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~--~ 353 (389)
T pfam05889 277 MKEQKEMFPLLRELLKDLAEEVGEQLLD-VPHNPISSAMTLETLDEISKKGRTDLGSELFSRRVTGARVVRSSDPFG--T 353 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCC--E
T ss_conf 9999999999999999999982987513-899951688873455666755499999999756787651665688853--4
Q ss_pred CCCCCCCCHHHH---HCCCCHHHHHHHHHHHHHHHH
Q ss_conf 985122466673---079998999999999999960
Q gi|254780349|r 364 TSGIRLGTPSGT---TRGFKEKDFEYIGELIAQILD 396 (433)
Q Consensus 364 ~sGiRlGT~aiT---trG~~e~em~~iA~li~~~L~ 396 (433)
T Consensus 354 ~~~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 354 IEGCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred EECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 616768836789998708868999999999998529