RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] (433 letters) >gnl|CDD|178792 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed. Length = 416 Score = 764 bits (1976), Expect = 0.0 Identities = 253/420 (60%), Positives = 320/420 (76%), Gaps = 4/420 (0%) Query: 9 FFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSK 68 FF +L E DP++ I QE RQ + I+LIASEN VS AV+EAQGS+LTNKYAEGYP K Sbjct: 1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGK 60 Query: 69 RYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLD 128 RYYGGC+YVD +E +AI+RAK+LF + NVQ HSGSQ N V+ AL+ PGD+ +G+ L Sbjct: 61 RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120 Query: 129 SGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVW 188 GGHLTHGS VN SGK + + Y V +E GL+D E+E LA+E+ PKLII G +AYSR Sbjct: 121 HGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPI 180 Query: 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMT 248 D++RFR IAD +GAYLM D++HI+GLV G HPSPVPH +VTTTTHK+LRGPRGGLI+T Sbjct: 181 DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240 Query: 249 NHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQ 308 N +LAKKINSA+FPG+QGGP MH IAAKAVAF EAL EF++YA+Q+V N++ALA+ L Sbjct: 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA 300 Query: 309 FLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIR 368 GF +VSGGTDNHL+LVDLRSK +TGK AE+ L +IT NKN++PFDP SPF+TSGIR Sbjct: 301 ERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIR 360 Query: 369 LGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVHCFPIYDFS 428 +GTP+ TTRGFKE + + I ELIA +LD + ++ ++ V +V+E FP+Y + Sbjct: 361 IGTPAITTRGFKEAEMKEIAELIADVLD----NPDDEAVIEEVKEEVKELCKRFPLYKYL 416 >gnl|CDD|183853 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed. Length = 416 Score = 700 bits (1809), Expect = 0.0 Identities = 252/417 (60%), Positives = 317/417 (76%), Gaps = 4/417 (0%) Query: 9 FFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSK 68 FF SL E D +VF+ I +E RQ D ++LIASEN S AV+EAQGS+LTNKYAEGYP K Sbjct: 4 FFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGK 63 Query: 69 RYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLD 128 RYYGGC++VD++E +AIERAK+LF ++ NVQ HSGSQ N V+LAL+ PGD+ +G+SL Sbjct: 64 RYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLS 123 Query: 129 SGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVW 188 GGHLTHG+ V++SGKW+ A+ Y V + GL+D E+E LA E+ PKLII G +AY R Sbjct: 124 HGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPREL 183 Query: 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMT 248 D+ RFR IAD +GA LM D++HI+GLV G+HP+P PH H+VTTTTHK+LRGPRGG+I+T Sbjct: 184 DFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILT 243 Query: 249 NHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQ 308 N ++AKKINSA+FPGLQGGP MH IAAKAVAFGEAL EF+ YAKQ++ N+QALA+ L+ Sbjct: 244 NDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLK 303 Query: 309 FLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIR 368 G+D+VSGGTDNHL+LVDLR K ++GK AE L R IT NKN++P D ESPF+TSGIR Sbjct: 304 ERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIR 363 Query: 369 LGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVHCFPIY 425 +GTP+GTTRGF E +F I I +LD D N +LE V +V+ FPIY Sbjct: 364 IGTPAGTTRGFGEAEFREIANWILDVLD----DLGNAALEQRVRKEVKALCSRFPIY 416 >gnl|CDD|185441 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional. Length = 452 Score = 531 bits (1370), Expect = e-151 Identities = 210/420 (50%), Positives = 279/420 (66%), Gaps = 20/420 (4%) Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71 QSL E+DP+++ LI +E RQ + ++LIASEN SRAVLE GS TNKYAEG P RYY Sbjct: 13 QSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYY 72 Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127 GG + VD IEN+ +RA + F ++ VNVQ +SGS N V+ AL+ P D MGL L Sbjct: 73 GGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDL 132 Query: 128 DSGGHLTHG-----SSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGT 182 SGGHLTHG V+ + +F+++PY V E GL+D ++E LA + PKLII G + Sbjct: 133 PSGGHLTHGFYTAKKKVSATSIYFESLPYQV-NEKGLIDYDKLEELAKAFRPKLIIAGAS 191 Query: 183 AYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPR 242 AY R D++RFR I DS+GAYLMADI+H SGLV G PSP P+ +VTTTTHKSLRGPR Sbjct: 192 AYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPR 251 Query: 243 GGLIMTN---HADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLN 299 GLI D+ KIN A+FPGLQGGP H IAA AV E S E+++YAKQ++ N Sbjct: 252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKN 311 Query: 300 SQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPE 359 ++ALA L+ G+D+V+GGTDNHL+LVDLR +TG + E +L V+I+ NKN+IP D + Sbjct: 312 AKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGD-K 370 Query: 360 SPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFV 419 S SG+RLGTP+ TTRG KEKDF+++ + + + + + ++ K+ +F Sbjct: 371 SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQVG------KKLVDFK 424 >gnl|CDD|178765 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional. Length = 475 Score = 482 bits (1243), Expect = e-137 Identities = 201/461 (43%), Positives = 275/461 (59%), Gaps = 40/461 (8%) Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71 L E DP++ +I +E RQ ++LIASEN SRAV+EA GS LTNKY+EG P RYY Sbjct: 13 APLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYY 72 Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127 GG +Y+D IE + +RA + F ++ VNVQ SGS N V+ AL+ P D MGL L Sbjct: 73 GGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDL 132 Query: 128 DSGGHLTHG-----SSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGT 182 GGHL+HG ++ + +F+++PY + + GL+D ++E A+ + PKLII G + Sbjct: 133 PHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGAS 192 Query: 183 AYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPR 242 AY R WD+ R R IAD +GA LM D++HISGLV + SP +C +VTTTTHKSLRGPR Sbjct: 193 AYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPR 252 Query: 243 GGLIM-------------TNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289 GG+I D KIN A+FPGLQGGP H+IAA AVA +A++ EF Sbjct: 253 GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEF 312 Query: 290 RDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITC 349 + Y KQ+ N+ ALA +L G+ +V+GGTDNHL+L DLR +TG R E +L IT Sbjct: 313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITL 372 Query: 350 NKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELI---------------AQI 394 NKN++P D S + G+R+GTP+ T+RG EKDFE + E + ++ Sbjct: 373 NKNAVPGD-SSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQKEHGKKL 431 Query: 395 LDGSSSDEENHSL-ELTVL-HKVQEFVHCFPIYDFSASALK 433 D E N ++ L +V+EF FP+ F ++K Sbjct: 432 KDFKKGLESNDFSKDIEALRAEVEEFATSFPMPGFDKESMK 472 >gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional. Length = 493 Score = 418 bits (1077), Expect = e-117 Identities = 189/461 (40%), Positives = 259/461 (56%), Gaps = 50/461 (10%) Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71 ++ +P + I QE Q ++LIASEN S AV A G++LT+KYAEG P R+Y Sbjct: 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFY 87 Query: 72 GGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLAL---------------M 116 GCQ VD +E A E AK+LF VQ HSG+ N F A+ Sbjct: 88 AGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAK 147 Query: 117 HPGD----------------SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLL 160 D +G+SLDSGGHLTHG N+SGK F Y V + GLL Sbjct: 148 TVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLL 207 Query: 161 DMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQ- 219 D EI +LA E+ P +++ G +AY R ++ + R IAD +GA LM D++H +GLV G Sbjct: 208 DYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267 Query: 220 --HPSPVPHCHIVTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAK 277 PVPH IVTTTTHK+LRGPRGGL++ + A ++ P + GGP H +AAK Sbjct: 268 TGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK-EYADAVDKGC-PLVLGGPLPHVMAAK 325 Query: 278 AVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKR 337 AVA EA + EF+ YA+Q+V N++ALA+ G +V+GGTDNHL+L+D+ S +TG++ Sbjct: 326 AVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQ 385 Query: 338 AESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQIL-- 395 AES L I N+NSIP DP + TSGIRLGTP+ TT G + + + ELI ++L Sbjct: 386 AESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 Query: 396 -------DGSSSDEENHSLELTVL----HKVQEFVHCFPIY 425 +G+ S + + L+ V +V E + FP+Y Sbjct: 446 TTPGTTAEGAPS-KAKYELDEGVAQEVRARVAELLARFPLY 485 >gnl|CDD|177911 PLN02271, PLN02271, serine hydroxymethyltransferase. Length = 586 Score = 376 bits (966), Expect = e-105 Identities = 184/415 (44%), Positives = 250/415 (60%), Gaps = 33/415 (7%) Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71 Q L E+DPD+ L+ +E RQ I+LIASEN V RAV+EA GS LTNKY+EG P RYY Sbjct: 127 QPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYY 186 Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127 G QY+D IE + ERA F ++ VNVQ +S + N V+ L+ PGD MGL Sbjct: 187 TGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 246 Query: 128 DSGGHLTHG----SSVNMSGK--WFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG 181 SGGH++HG +SG +F+++PY V + G +D ++E A+++ PK++I GG Sbjct: 247 PSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGG 306 Query: 182 TAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGP 241 ++Y R WD+ RFR IAD GA LM D++HISGLV + +P +C IVT+TTHKSLRGP Sbjct: 307 SSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGP 366 Query: 242 RGGLIM-------------------TNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFG 282 RGG+I +H D +KIN A+FP LQGGP + IAA A+A Sbjct: 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALK 426 Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESIL 342 + + E++ Y +Q+ N+QALA L +V+GGTDNHL+L DL + +TGK E + Sbjct: 427 QVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVC 486 Query: 343 GRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELI---AQI 394 IT NK +I F G+R+GTP+ T+RG E DFE I + + AQI Sbjct: 487 EMCHITLNKTAI-FGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI 540 >gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. Length = 380 Score = 35.0 bits (81), Expect = 0.043 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%) Query: 153 VRKEDGLLDMHEIESL---AIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADIS 209 + + G +D +E A PK I+ A V D + ++A G ++ D S Sbjct: 98 IDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGKSV-DMQAIAALAKKHGLKIIEDAS 156 Query: 210 HISGLVVGGQHPSPVPHCHIVTTTT---H--KSLRGPRGGLIMTNHADLAKKI 257 H G GG+ PV +C T H K + GG + TN +LA+++ Sbjct: 157 HALGAEYGGK---PVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERM 206 >gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385 Score = 33.6 bits (77), Expect = 0.10 Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 32/227 (14%) Query: 102 HSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLD 161 SG NQGV AL+ GD + L H S ++ G + K + D Sbjct: 100 QSGFNTNQGVLSALLRKGDIVL------SDELNHASIID--GLRLTKATKKIYKHADMDD 151 Query: 162 MHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSI---ADSIGAYLMADISHISGLVVGG 218 + + Y KLI+ G +S D I A+ GA D +H SG V+G Sbjct: 152 LDRVLRENPSYGKKLIVTDGV-FSMDGDVAPLPEIVELAERYGAVTYVDDAHGSG-VMGE 209 Query: 219 QHPSPVPH------CHIVTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMH 272 V H I T K++ G GG H +L + + + + PF+ Sbjct: 210 AGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYA-AGHKELIEYLKN------RARPFLF 261 Query: 273 SIA---AKAVAFGEALSSEFR--DYAKQIVLNSQALAKKLQFLGFDI 314 S A A A A+ R + +++ N++ L LG+D Sbjct: 262 STAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDT 308 >gnl|CDD|132615 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. Length = 346 Score = 33.6 bits (77), Expect = 0.12 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 177 IIVGGTAYSRVWDWERFRSIADSIGA----YLMADISHISGLVVGGQHPSPVPHCHIVTT 232 +I G T +V E + + + L+ D S + GQ P+ +V T Sbjct: 141 VITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVT 200 Query: 233 TTHKSLRGPRGGLIMTNHADLAKKINSAIFP-GLQGGPFMHSIAAKAVAFGEALSSEFRD 291 +T K + GPRGGL + +L KI S GL+ + +AA A E S RD Sbjct: 201 STDKLMDGPRGGL-LAGRKELVDKIKSVGEQFGLEAQAPL--LAAVVRALEEFELSRIRD 257 Query: 292 YAKQ 295 K+ Sbjct: 258 AFKR 261 >gnl|CDD|117579 pfam09013, YopH_N, YopH, N-terminal. The N-terminal domain of YopH is a compact structure composed of four alpha-helices and two beta-hairpins. Helices alpha-1 and alpha-3 are parallel to each other and antiparallel to helices alpha-2 and alpha-4. This domain targets YopH for secretion from the bacterium and translocation into eukaryotic cells, and has phosphotyrosyl peptide-binding activity, allowing for recognition of p130Cas and paxillin. Length = 109 Score = 32.1 bits (73), Expect = 0.28 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 10/94 (10%) Query: 250 HADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQF 309 + ++ + F GL +I + +A + E ++ K LN + +AK L Sbjct: 19 SGECIGRLRTT-FQGL-------TITSGIRESEKAFAQEVLEHVKNTALNREDVAKLLPR 70 Query: 310 LG-FDIVSGGTDNHLMLVDLRSKRMTGKRAESIL 342 L F++ G ++LV LRS++++ + A+ +L Sbjct: 71 LSNFELRQGKNGE-VILVGLRSEQLSLQDAKLLL 103 >gnl|CDD|140013 PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional. Length = 247 Score = 31.4 bits (71), Expect = 0.51 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 165 IESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS--IGAYLM--ADISH 210 +E +A P ++ VG + D ++FR + D+ IG Y M DI Sbjct: 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFMEKKDIRK 241 >gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional. Length = 397 Score = 30.2 bits (69), Expect = 1.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 196 IADSIGAYLMADISHISGLVVGGQHPSPVPHC------HIVTTTTHKSLRGPRGG 244 +AD A +M D SH G VG V H I+T T K+L G GG Sbjct: 199 LADKYDALVMVDDSHAVG-FVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGG 252 >gnl|CDD|161727 TIGR00131, gal_kin, galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity. Length = 386 Score = 29.8 bits (67), Expect = 1.2 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 273 SIAAKAVAFGEALSSEFRDY--AKQIVLNSQALAKKLQFLGFD-------IVSGGTDNHL 323 S AA A G L + +KQI+L Q F+G + G ++H Sbjct: 127 SSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAEN--HFVGVNCGIMDQAASVLGKEDHA 184 Query: 324 MLVDLRS 330 +LV+ RS Sbjct: 185 LLVECRS 191 >gnl|CDD|150270 pfam09537, DUF2383, Domain of unknown function (DUF2383). Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown. Length = 111 Score = 29.5 bits (67), Expect = 1.9 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGT---DNHLMLVDLRSKRMTGKRAE 339 L + F+ A + + L +++ LG + GG+ H +DL+S +TG E Sbjct: 30 PQLKALFQRRAAERRQAAAELQAEIRALGGEPEDGGSFAGTLHRAWMDLKSA-LTGDDDE 88 Query: 340 SILG 343 ++L Sbjct: 89 AVLE 92 >gnl|CDD|178870 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed. Length = 138 Score = 29.3 bits (67), Expect = 1.9 Identities = 8/28 (28%), Positives = 16/28 (57%) Query: 153 VRKEDGLLDMHEIESLAIEYNPKLIIVG 180 +++ +G D +E L E+ P ++VG Sbjct: 34 IKRNNGTPDWDRLEKLIKEWQPDGLVVG 61 >gnl|CDD|185128 PRK15206, PRK15206, long polar fimbrial protein LpfD; Provisional. Length = 359 Score = 29.2 bits (65), Expect = 1.9 Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 279 VAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSG 317 + FGE +++F+D Q+ N+ K+LQF +I G Sbjct: 227 IPFGEFKATDFKDRKGQVAKNATKFTKELQFKCTNISDG 265 >gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional. Length = 576 Score = 29.2 bits (65), Expect = 2.1 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 77 VDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLS-LDSGGHLTH 135 +D+I N K+L + NF N + G+ NQ + + S +G++ ++GG Sbjct: 123 LDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKATIGATQSSKIGVTRFETGGRSFT 182 Query: 136 GSSVNMSGKWFKAI 149 V ++ K + I Sbjct: 183 SGEVQLTIKNYNGI 196 >gnl|CDD|149791 pfam08844, DUF1815, Domain of unknown function (DUF1815). This presumed domain is about 100 amino acids in length and is functionally uncharacterized. Length = 106 Score = 29.0 bits (65), Expect = 2.4 Identities = 9/28 (32%), Positives = 18/28 (64%) Query: 285 LSSEFRDYAKQIVLNSQALAKKLQFLGF 312 L+ ++R + +V++ QALA L+ G+ Sbjct: 4 LAEQYRSVVQDLVMSLQALAIVLEKRGY 31 >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated. Length = 427 Score = 28.9 bits (65), Expect = 2.9 Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 23/120 (19%) Query: 111 VFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGL-LDMHE----- 164 VF L+ PGD F+ +G S+N G FK+ + VR D E Sbjct: 94 VFHTLLQPGDEFI------AARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITP 147 Query: 165 ------IESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGA--YLMADISHISGLVV 216 IES+A NP + A + V I D+ A YL+ I H + +VV Sbjct: 148 RTKAIFIESIA---NPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVV 204 >gnl|CDD|169431 PRK08411, PRK08411, flagellin; Reviewed. Length = 572 Score = 28.4 bits (63), Expect = 3.7 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 77 VDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLS-LDSGGHLTH 135 +D+I N K+L + NF N + G+ NQ V + S +G++ ++G +T Sbjct: 123 LDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKATIGATQSSKIGVTRFETGARITT 182 Query: 136 GSSVNMSGKWFKAI 149 V ++ K + I Sbjct: 183 SGVVQLTIKNYNGI 196 >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. Length = 376 Score = 27.7 bits (62), Expect = 5.3 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%) Query: 156 EDGLLDMHEIESLAIEYNPKLII------VGGTAYSRVWDWERFRSIADSIGAYLMADIS 209 +GL+ I+ AI+ N KLI+ V GT + E +A G + + D + Sbjct: 121 NEGLISPERIKR-AIKTNTKLIVVSHASNVTGT----ILPIEEIGELAQENGIFFILDAA 175 Query: 210 HISGLVVGGQHPSPVPHCHI--VTTTTHKSLRGPRG--GLI 246 +G++ P + I + T HK L GP+G GL Sbjct: 176 QTAGVI-----PIDMTELAIDMLAFTGHKGLLGPQGTGGLY 211 >gnl|CDD|128977 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p. Length = 106 Score = 27.0 bits (60), Expect = 8.9 Identities = 9/27 (33%), Positives = 12/27 (44%) Query: 203 YLMADISHISGLVVGGQHPSPVPHCHI 229 + + G V GG P+PVP I Sbjct: 74 TAIRGTPGVRGFVGGGGKPTPVPDDEI 100 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,045,256 Number of extensions: 458719 Number of successful extensions: 862 Number of sequences better than 10.0: 1 Number of HSP's gapped: 843 Number of HSP's successfully gapped: 27 Length of query: 433 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 337 Effective length of database: 3,920,105 Effective search space: 1321075385 Effective search space used: 1321075385 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.5 bits)