RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780349|ref|YP_003064762.1| serine
hydroxymethyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(433 letters)
>gnl|CDD|178792 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 764 bits (1976), Expect = 0.0
Identities = 253/420 (60%), Positives = 320/420 (76%), Gaps = 4/420 (0%)
Query: 9 FFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSK 68
FF +L E DP++ I QE RQ + I+LIASEN VS AV+EAQGS+LTNKYAEGYP K
Sbjct: 1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGK 60
Query: 69 RYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLD 128
RYYGGC+YVD +E +AI+RAK+LF + NVQ HSGSQ N V+ AL+ PGD+ +G+ L
Sbjct: 61 RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120
Query: 129 SGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVW 188
GGHLTHGS VN SGK + + Y V +E GL+D E+E LA+E+ PKLII G +AYSR
Sbjct: 121 HGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPI 180
Query: 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMT 248
D++RFR IAD +GAYLM D++HI+GLV G HPSPVPH +VTTTTHK+LRGPRGGLI+T
Sbjct: 181 DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
Query: 249 NHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQ 308
N +LAKKINSA+FPG+QGGP MH IAAKAVAF EAL EF++YA+Q+V N++ALA+ L
Sbjct: 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA 300
Query: 309 FLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIR 368
GF +VSGGTDNHL+LVDLRSK +TGK AE+ L +IT NKN++PFDP SPF+TSGIR
Sbjct: 301 ERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIR 360
Query: 369 LGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVHCFPIYDFS 428
+GTP+ TTRGFKE + + I ELIA +LD + ++ ++ V +V+E FP+Y +
Sbjct: 361 IGTPAITTRGFKEAEMKEIAELIADVLD----NPDDEAVIEEVKEEVKELCKRFPLYKYL 416
>gnl|CDD|183853 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 700 bits (1809), Expect = 0.0
Identities = 252/417 (60%), Positives = 317/417 (76%), Gaps = 4/417 (0%)
Query: 9 FFQQSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSK 68
FF SL E D +VF+ I +E RQ D ++LIASEN S AV+EAQGS+LTNKYAEGYP K
Sbjct: 4 FFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGK 63
Query: 69 RYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLSLD 128
RYYGGC++VD++E +AIERAK+LF ++ NVQ HSGSQ N V+LAL+ PGD+ +G+SL
Sbjct: 64 RYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLS 123
Query: 129 SGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYSRVW 188
GGHLTHG+ V++SGKW+ A+ Y V + GL+D E+E LA E+ PKLII G +AY R
Sbjct: 124 HGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPREL 183
Query: 189 DWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPRGGLIMT 248
D+ RFR IAD +GA LM D++HI+GLV G+HP+P PH H+VTTTTHK+LRGPRGG+I+T
Sbjct: 184 DFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILT 243
Query: 249 NHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQ 308
N ++AKKINSA+FPGLQGGP MH IAAKAVAFGEAL EF+ YAKQ++ N+QALA+ L+
Sbjct: 244 NDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLK 303
Query: 309 FLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIR 368
G+D+VSGGTDNHL+LVDLR K ++GK AE L R IT NKN++P D ESPF+TSGIR
Sbjct: 304 ERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIR 363
Query: 369 LGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFVHCFPIY 425
+GTP+GTTRGF E +F I I +LD D N +LE V +V+ FPIY
Sbjct: 364 IGTPAGTTRGFGEAEFREIANWILDVLD----DLGNAALEQRVRKEVKALCSRFPIY 416
>gnl|CDD|185441 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 531 bits (1370), Expect = e-151
Identities = 210/420 (50%), Positives = 279/420 (66%), Gaps = 20/420 (4%)
Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71
QSL E+DP+++ LI +E RQ + ++LIASEN SRAVLE GS TNKYAEG P RYY
Sbjct: 13 QSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYY 72
Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127
GG + VD IEN+ +RA + F ++ VNVQ +SGS N V+ AL+ P D MGL L
Sbjct: 73 GGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDL 132
Query: 128 DSGGHLTHG-----SSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGT 182
SGGHLTHG V+ + +F+++PY V E GL+D ++E LA + PKLII G +
Sbjct: 133 PSGGHLTHGFYTAKKKVSATSIYFESLPYQV-NEKGLIDYDKLEELAKAFRPKLIIAGAS 191
Query: 183 AYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPR 242
AY R D++RFR I DS+GAYLMADI+H SGLV G PSP P+ +VTTTTHKSLRGPR
Sbjct: 192 AYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPR 251
Query: 243 GGLIMTN---HADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLN 299
GLI D+ KIN A+FPGLQGGP H IAA AV E S E+++YAKQ++ N
Sbjct: 252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKN 311
Query: 300 SQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITCNKNSIPFDPE 359
++ALA L+ G+D+V+GGTDNHL+LVDLR +TG + E +L V+I+ NKN+IP D +
Sbjct: 312 AKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGD-K 370
Query: 360 SPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEENHSLELTVLHKVQEFV 419
S SG+RLGTP+ TTRG KEKDF+++ + + + + + ++ K+ +F
Sbjct: 371 SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQVG------KKLVDFK 424
>gnl|CDD|178765 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 482 bits (1243), Expect = e-137
Identities = 201/461 (43%), Positives = 275/461 (59%), Gaps = 40/461 (8%)
Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71
L E DP++ +I +E RQ ++LIASEN SRAV+EA GS LTNKY+EG P RYY
Sbjct: 13 APLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYY 72
Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127
GG +Y+D IE + +RA + F ++ VNVQ SGS N V+ AL+ P D MGL L
Sbjct: 73 GGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDL 132
Query: 128 DSGGHLTHG-----SSVNMSGKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGGT 182
GGHL+HG ++ + +F+++PY + + GL+D ++E A+ + PKLII G +
Sbjct: 133 PHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGAS 192
Query: 183 AYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGPR 242
AY R WD+ R R IAD +GA LM D++HISGLV + SP +C +VTTTTHKSLRGPR
Sbjct: 193 AYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPR 252
Query: 243 GGLIM-------------TNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289
GG+I D KIN A+FPGLQGGP H+IAA AVA +A++ EF
Sbjct: 253 GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEF 312
Query: 290 RDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESILGRVSITC 349
+ Y KQ+ N+ ALA +L G+ +V+GGTDNHL+L DLR +TG R E +L IT
Sbjct: 313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITL 372
Query: 350 NKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELI---------------AQI 394
NKN++P D S + G+R+GTP+ T+RG EKDFE + E + ++
Sbjct: 373 NKNAVPGD-SSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQKEHGKKL 431
Query: 395 LDGSSSDEENHSL-ELTVL-HKVQEFVHCFPIYDFSASALK 433
D E N ++ L +V+EF FP+ F ++K
Sbjct: 432 KDFKKGLESNDFSKDIEALRAEVEEFATSFPMPGFDKESMK 472
>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional.
Length = 493
Score = 418 bits (1077), Expect = e-117
Identities = 189/461 (40%), Positives = 259/461 (56%), Gaps = 50/461 (10%)
Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71
++ +P + I QE Q ++LIASEN S AV A G++LT+KYAEG P R+Y
Sbjct: 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFY 87
Query: 72 GGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLAL---------------M 116
GCQ VD +E A E AK+LF VQ HSG+ N F A+
Sbjct: 88 AGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAK 147
Query: 117 HPGD----------------SFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLL 160
D +G+SLDSGGHLTHG N+SGK F Y V + GLL
Sbjct: 148 TVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLL 207
Query: 161 DMHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQ- 219
D EI +LA E+ P +++ G +AY R ++ + R IAD +GA LM D++H +GLV G
Sbjct: 208 DYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267
Query: 220 --HPSPVPHCHIVTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAK 277
PVPH IVTTTTHK+LRGPRGGL++ + A ++ P + GGP H +AAK
Sbjct: 268 TGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK-EYADAVDKGC-PLVLGGPLPHVMAAK 325
Query: 278 AVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKR 337
AVA EA + EF+ YA+Q+V N++ALA+ G +V+GGTDNHL+L+D+ S +TG++
Sbjct: 326 AVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQ 385
Query: 338 AESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQIL-- 395
AES L I N+NSIP DP + TSGIRLGTP+ TT G + + + ELI ++L
Sbjct: 386 AESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445
Query: 396 -------DGSSSDEENHSLELTVL----HKVQEFVHCFPIY 425
+G+ S + + L+ V +V E + FP+Y
Sbjct: 446 TTPGTTAEGAPS-KAKYELDEGVAQEVRARVAELLARFPLY 485
>gnl|CDD|177911 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 376 bits (966), Expect = e-105
Identities = 184/415 (44%), Positives = 250/415 (60%), Gaps = 33/415 (7%)
Query: 12 QSLIESDPDVFSLIGQESCRQNDEIQLIASENIVSRAVLEAQGSILTNKYAEGYPSKRYY 71
Q L E+DPD+ L+ +E RQ I+LIASEN V RAV+EA GS LTNKY+EG P RYY
Sbjct: 127 QPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYY 186
Query: 72 GGCQYVDDIENIAIERAKKLFNVNF----VNVQSHSGSQMNQGVFLALMHPGDSFMGLSL 127
G QY+D IE + ERA F ++ VNVQ +S + N V+ L+ PGD MGL
Sbjct: 187 TGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 246
Query: 128 DSGGHLTHG----SSVNMSGK--WFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVGG 181
SGGH++HG +SG +F+++PY V + G +D ++E A+++ PK++I GG
Sbjct: 247 PSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGG 306
Query: 182 TAYSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPHCHIVTTTTHKSLRGP 241
++Y R WD+ RFR IAD GA LM D++HISGLV + +P +C IVT+TTHKSLRGP
Sbjct: 307 SSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGP 366
Query: 242 RGGLIM-------------------TNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFG 282
RGG+I +H D +KIN A+FP LQGGP + IAA A+A
Sbjct: 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALK 426
Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSKRMTGKRAESIL 342
+ + E++ Y +Q+ N+QALA L +V+GGTDNHL+L DL + +TGK E +
Sbjct: 427 QVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVC 486
Query: 343 GRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELI---AQI 394
IT NK +I F G+R+GTP+ T+RG E DFE I + + AQI
Sbjct: 487 EMCHITLNKTAI-FGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI 540
>gnl|CDD|163338 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 35.0 bits (81), Expect = 0.043
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 153 VRKEDGLLDMHEIESL---AIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGAYLMADIS 209
+ + G +D +E A PK I+ A V D + ++A G ++ D S
Sbjct: 98 IDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGKSV-DMQAIAALAKKHGLKIIEDAS 156
Query: 210 HISGLVVGGQHPSPVPHCHIVTTTT---H--KSLRGPRGGLIMTNHADLAKKI 257
H G GG+ PV +C T H K + GG + TN +LA+++
Sbjct: 157 HALGAEYGGK---PVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERM 206
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 33.6 bits (77), Expect = 0.10
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 32/227 (14%)
Query: 102 HSGSQMNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLD 161
SG NQGV AL+ GD + L H S ++ G + K + D
Sbjct: 100 QSGFNTNQGVLSALLRKGDIVL------SDELNHASIID--GLRLTKATKKIYKHADMDD 151
Query: 162 MHEIESLAIEYNPKLIIVGGTAYSRVWDWERFRSI---ADSIGAYLMADISHISGLVVGG 218
+ + Y KLI+ G +S D I A+ GA D +H SG V+G
Sbjct: 152 LDRVLRENPSYGKKLIVTDGV-FSMDGDVAPLPEIVELAERYGAVTYVDDAHGSG-VMGE 209
Query: 219 QHPSPVPH------CHIVTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMH 272
V H I T K++ G GG H +L + + + + PF+
Sbjct: 210 AGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYA-AGHKELIEYLKN------RARPFLF 261
Query: 273 SIA---AKAVAFGEALSSEFR--DYAKQIVLNSQALAKKLQFLGFDI 314
S A A A A+ R + +++ N++ L LG+D
Sbjct: 262 STAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDT 308
>gnl|CDD|132615 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog.
Length = 346
Score = 33.6 bits (77), Expect = 0.12
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 177 IIVGGTAYSRVWDWERFRSIADSIGA----YLMADISHISGLVVGGQHPSPVPHCHIVTT 232
+I G T +V E + + + L+ D S + GQ P+ +V T
Sbjct: 141 VITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVT 200
Query: 233 TTHKSLRGPRGGLIMTNHADLAKKINSAIFP-GLQGGPFMHSIAAKAVAFGEALSSEFRD 291
+T K + GPRGGL + +L KI S GL+ + +AA A E S RD
Sbjct: 201 STDKLMDGPRGGL-LAGRKELVDKIKSVGEQFGLEAQAPL--LAAVVRALEEFELSRIRD 257
Query: 292 YAKQ 295
K+
Sbjct: 258 AFKR 261
>gnl|CDD|117579 pfam09013, YopH_N, YopH, N-terminal. The N-terminal domain of YopH
is a compact structure composed of four alpha-helices
and two beta-hairpins. Helices alpha-1 and alpha-3 are
parallel to each other and antiparallel to helices
alpha-2 and alpha-4. This domain targets YopH for
secretion from the bacterium and translocation into
eukaryotic cells, and has phosphotyrosyl peptide-binding
activity, allowing for recognition of p130Cas and
paxillin.
Length = 109
Score = 32.1 bits (73), Expect = 0.28
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 250 HADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQF 309
+ ++ + F GL +I + +A + E ++ K LN + +AK L
Sbjct: 19 SGECIGRLRTT-FQGL-------TITSGIRESEKAFAQEVLEHVKNTALNREDVAKLLPR 70
Query: 310 LG-FDIVSGGTDNHLMLVDLRSKRMTGKRAESIL 342
L F++ G ++LV LRS++++ + A+ +L
Sbjct: 71 LSNFELRQGKNGE-VILVGLRSEQLSLQDAKLLL 103
>gnl|CDD|140013 PRK13957, PRK13957, indole-3-glycerol-phosphate synthase;
Provisional.
Length = 247
Score = 31.4 bits (71), Expect = 0.51
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 165 IESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADS--IGAYLM--ADISH 210
+E +A P ++ VG + D ++FR + D+ IG Y M DI
Sbjct: 192 VEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFMEKKDIRK 241
>gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 30.2 bits (69), Expect = 1.1
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 196 IADSIGAYLMADISHISGLVVGGQHPSPVPHC------HIVTTTTHKSLRGPRGG 244
+AD A +M D SH G VG V H I+T T K+L G GG
Sbjct: 199 LADKYDALVMVDDSHAVG-FVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGG 252
>gnl|CDD|161727 TIGR00131, gal_kin, galactokinase. The galactokinases found by
this model are divided into two sets. Prokaryotic forms
are generally shorter. The eukaryotic forms are longer
because of additional central regions and in some cases
are known to be bifunctional, with regulatory activities
that are independent of galactokinase activity.
Length = 386
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 273 SIAAKAVAFGEALSSEFRDY--AKQIVLNSQALAKKLQFLGFD-------IVSGGTDNHL 323
S AA A G L + +KQI+L Q F+G + G ++H
Sbjct: 127 SSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAEN--HFVGVNCGIMDQAASVLGKEDHA 184
Query: 324 MLVDLRS 330
+LV+ RS
Sbjct: 185 LLVECRS 191
>gnl|CDD|150270 pfam09537, DUF2383, Domain of unknown function (DUF2383). Members
of this protein family are found mostly in the
Proteobacteria, although one member is found in the the
marine planctomycete Pirellula sp. strain 1. The
function is unknown.
Length = 111
Score = 29.5 bits (67), Expect = 1.9
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 283 EALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGT---DNHLMLVDLRSKRMTGKRAE 339
L + F+ A + + L +++ LG + GG+ H +DL+S +TG E
Sbjct: 30 PQLKALFQRRAAERRQAAAELQAEIRALGGEPEDGGSFAGTLHRAWMDLKSA-LTGDDDE 88
Query: 340 SILG 343
++L
Sbjct: 89 AVLE 92
>gnl|CDD|178870 PRK00109, PRK00109, Holliday junction resolvase-like protein;
Reviewed.
Length = 138
Score = 29.3 bits (67), Expect = 1.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 153 VRKEDGLLDMHEIESLAIEYNPKLIIVG 180
+++ +G D +E L E+ P ++VG
Sbjct: 34 IKRNNGTPDWDRLEKLIKEWQPDGLVVG 61
>gnl|CDD|185128 PRK15206, PRK15206, long polar fimbrial protein LpfD; Provisional.
Length = 359
Score = 29.2 bits (65), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 279 VAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSG 317
+ FGE +++F+D Q+ N+ K+LQF +I G
Sbjct: 227 IPFGEFKATDFKDRKGQVAKNATKFTKELQFKCTNISDG 265
>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
Length = 576
Score = 29.2 bits (65), Expect = 2.1
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 77 VDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLS-LDSGGHLTH 135
+D+I N K+L + NF N + G+ NQ + + S +G++ ++GG
Sbjct: 123 LDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKATIGATQSSKIGVTRFETGGRSFT 182
Query: 136 GSSVNMSGKWFKAI 149
V ++ K + I
Sbjct: 183 SGEVQLTIKNYNGI 196
>gnl|CDD|149791 pfam08844, DUF1815, Domain of unknown function (DUF1815). This
presumed domain is about 100 amino acids in length and
is functionally uncharacterized.
Length = 106
Score = 29.0 bits (65), Expect = 2.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 285 LSSEFRDYAKQIVLNSQALAKKLQFLGF 312
L+ ++R + +V++ QALA L+ G+
Sbjct: 4 LAEQYRSVVQDLVMSLQALAIVLEKRGY 31
>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 427
Score = 28.9 bits (65), Expect = 2.9
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 111 VFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGL-LDMHE----- 164
VF L+ PGD F+ +G S+N G FK+ + VR D E
Sbjct: 94 VFHTLLQPGDEFI------AARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITP 147
Query: 165 ------IESLAIEYNPKLIIVGGTAYSRVWDWERFRSIADSIGA--YLMADISHISGLVV 216
IES+A NP + A + V I D+ A YL+ I H + +VV
Sbjct: 148 RTKAIFIESIA---NPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVV 204
>gnl|CDD|169431 PRK08411, PRK08411, flagellin; Reviewed.
Length = 572
Score = 28.4 bits (63), Expect = 3.7
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 77 VDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMGLS-LDSGGHLTH 135
+D+I N K+L + NF N + G+ NQ V + S +G++ ++G +T
Sbjct: 123 LDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKATIGATQSSKIGVTRFETGARITT 182
Query: 136 GSSVNMSGKWFKAI 149
V ++ K + I
Sbjct: 183 SGVVQLTIKNYNGI 196
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown.
Length = 376
Score = 27.7 bits (62), Expect = 5.3
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 156 EDGLLDMHEIESLAIEYNPKLII------VGGTAYSRVWDWERFRSIADSIGAYLMADIS 209
+GL+ I+ AI+ N KLI+ V GT + E +A G + + D +
Sbjct: 121 NEGLISPERIKR-AIKTNTKLIVVSHASNVTGT----ILPIEEIGELAQENGIFFILDAA 175
Query: 210 HISGLVVGGQHPSPVPHCHI--VTTTTHKSLRGPRG--GLI 246
+G++ P + I + T HK L GP+G GL
Sbjct: 176 QTAGVI-----PIDMTELAIDMLAFTGHKGLLGPQGTGGLY 211
>gnl|CDD|128977 smart00738, NGN, In Spt5p, this domain may confer affinity for
Spt4p. It possesses a RNP-like fold. In Spt5p, this
domain may confer affinity for Spt4p.Spt4p.
Length = 106
Score = 27.0 bits (60), Expect = 8.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 203 YLMADISHISGLVVGGQHPSPVPHCHI 229
+ + G V GG P+PVP I
Sbjct: 74 TAIRGTPGVRGFVGGGGKPTPVPDDEI 100
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,045,256
Number of extensions: 458719
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 27
Length of query: 433
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 337
Effective length of database: 3,920,105
Effective search space: 1321075385
Effective search space used: 1321075385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)