HHSEARCH alignment of GI: 254780350 and SCOP domain: d1su3a1

Alignment

Probab=97.88  E-value=1.1e-05  Score=51.99  Aligned_cols=55  Identities=24%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             HHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
Q ss_conf             99999981986656787--76457899999999999808887870299999884489
Q gi|254780350|r  114 LRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP  168 (431)
Q Consensus       114 Lr~RL~~~Gdl~~~~~~--~~~yD~~l~~AVk~FQ~rhGL~~DGvig~~Tl~aLN~~  168 (431)
                      .++=|..-|||+.....  ....+..+.+||+.||+-+||++||.+|++|++.|+.|
T Consensus         3 ~~~YL~~fgyl~~~~~~~~~~~~~~~~~~Aik~fQ~f~~L~~TG~lD~~T~~~M~~P   59 (67)
T d1su3a1           3 VQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP   59 (67)
T ss_dssp             HHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf             999999818999886532244565899999999999829985466699999988778

SCOP domain information

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: MMP N-terminal domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]