HHSEARCH alignment of GI: 254780350 and SCOP domain: d2bgxa1

Alignment
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.18  E-value=0.0083  Score=34.16  Aligned_cols=61  Identities=18%  Similarity=0.026  Sum_probs=48.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHC
Q ss_conf             14688882489999999981986656787764578999999999998088-878702999998844
Q gi|254780350|r  102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMN  166 (431)
Q Consensus       102 L~~G~~~~~V~~Lr~RL~~~Gdl~~~~~~~~~yD~~l~~AVk~FQ~rhGL-~~DGvig~~Tl~aLN  166 (431)
                      .+.+.+-.++..+++.|...||--.    .+.+|..+..+|++||.++-= ..||.+|.+|++-|.
T Consensus        12 ~~~~~~~~~~~~~~~~L~k~GY~i~----~~~~~~~~k~vi~AFQrhFRp~~i~G~~D~Et~~Il~   73 (81)
T d2bgxa1          12 GRAPHTPVDTASLLELLARYGYDVK----PDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAE   73 (81)
T ss_dssp             TCCTTCBCCHHHHHHHHHHHTCCCC----TTCCHHHHHHHHHHHHHHHCTTCCSSCCBHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             3477893559999999999099888----7877278899999999873611048857899999999


SCOP domain information

class: All alpha proteins
fold: PGBD-like
superfamily: PGBD-like
family: Peptidoglycan binding domain, PGBD
domain: Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain
species: Escherichia coli [TaxId: 562]